BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009212
(540 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297736840|emb|CBI26041.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 298/494 (60%), Positives = 351/494 (71%), Gaps = 56/494 (11%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNK-DPSQPTT 129
YSR ++T GA +LID++TGEK IVWGG DDD PPIP K +L +WN D + PT
Sbjct: 48 YSRRQMDTPGAYQLIDDETGEKFIVWGGIDDD----PPIPSKDVL---SWNPVDNNTPTP 100
Query: 130 S---------APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE 180
S A ++ + KGV SF RLKAQRVKA+
Sbjct: 101 SKDGHAGIEPAAAVKKDVFPKAQTKGVTGSFGRLKAQRVKAL------------------ 142
Query: 181 GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKID-------- 232
TT + + REL E+ + +D + S+ K +S KI
Sbjct: 143 -----TTKTSKAKRELNEYKIHSDKTVKRDIGKFSELQITPEKPHRSDNKIAGADVLVPR 197
Query: 233 ------RGWRSGGSIHNLQYEPTDCPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLK 284
+GW G ++ N ++E T+ PK+R K + AD DFFS KSF++LGCSDYMIESL+
Sbjct: 198 VSTANLQGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLR 257
Query: 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344
Q F+RPS IQAMAF V+EGKSCI+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G
Sbjct: 258 GQLFVRPSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAG 317
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
P+VVIL PTAELASQVLSNCRS+SK G PFRSM TGGFRQ+TQLENLQ+ +DVLIATP
Sbjct: 318 CPQVVILVPTAELASQVLSNCRSISKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATP 377
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
GRFMFLIKEG LQL NLRCA+LDEVDIL NDEDFE+ALQ+LI+SSPVT QYLFVTATLPV
Sbjct: 378 GRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQTLINSSPVTMQYLFVTATLPV 437
Query: 465 EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524
IYNKLVEVFPDC+V+MGPGMHRIS LEE LVDCSGD ++KTPE+AFLNKKSALLQL+
Sbjct: 438 GIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDDGTEKTPESAFLNKKSALLQLV 497
Query: 525 EKSPVSKTIVFCNK 538
E SPVS+TIVFCNK
Sbjct: 498 EGSPVSRTIVFCNK 511
>gi|225432238|ref|XP_002275635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Vitis
vinifera]
Length = 707
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 305/530 (57%), Positives = 364/530 (68%), Gaps = 69/530 (13%)
Query: 71 YSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNK-DPSQPTT 129
YSR ++T GA +LID++TGEK IVWGG DDD PPIP K +L +WN D + PT
Sbjct: 48 YSRRQMDTPGAYQLIDDETGEKFIVWGGIDDD----PPIPSKDVL---SWNPVDNNTPTP 100
Query: 130 S---------APVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTV----NA 176
S A ++ + KGV SF RLKAQRVKA+ K S ++ N
Sbjct: 101 SKDGHAGIEPAAAVKKDVFPKAQTKGVTGSFGRLKAQRVKALTTKTSKAKRELNECDDNE 160
Query: 177 LKQEG---RLSKTTPSLENF--------------------RELGE------HIVDNDVPA 207
L+ EG R S + S F RE+ + I D
Sbjct: 161 LEVEGAPSRRSIGSHSELEFMDEKKKLLIHGGNASRAFRRREIKDVIQTTGEIKDKIHSD 220
Query: 208 ESIDKNISDYNSRS---NKHEKSGTKID--------------RGWRSGGSIHNLQYEPTD 250
+++ ++I ++ K +S KI +GW G ++ N ++E T+
Sbjct: 221 KTVKRDIGKFSELQITPEKPHRSDNKIAGADVLVPRVSTANLQGWGYGETMRNFEFETTN 280
Query: 251 CPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308
PK+R K + AD DFFS KSF++LGCSDYMIESL+ Q F+RPS IQAMAF V+EGKSC
Sbjct: 281 IPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLRGQLFVRPSHIQAMAFATVMEGKSC 340
Query: 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368
I+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G P+VVIL PTAELASQVLSNCRS+
Sbjct: 341 IIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAGCPQVVILVPTAELASQVLSNCRSI 400
Query: 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428
SK G PFRSM TGGFRQ+TQLENLQ+ +DVLIATPGRFMFLIKEG LQL NLRCA+LDE
Sbjct: 401 SKFGAPFRSMAATGGFRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLRCAVLDE 460
Query: 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI 488
VDIL NDEDFE+ALQ+LI+SSPVT QYLFVTATLPV IYNKLVEVFPDC+V+MGPGMHRI
Sbjct: 461 VDILLNDEDFELALQTLINSSPVTMQYLFVTATLPVGIYNKLVEVFPDCEVIMGPGMHRI 520
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
S LEE LVDCSGD ++KTPE+AFLNKKSALLQL+E SPVS+TIVFCNK
Sbjct: 521 SSRLEEVLVDCSGDDGTEKTPESAFLNKKSALLQLVEGSPVSRTIVFCNK 570
>gi|449459868|ref|XP_004147668.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 648
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 270/495 (54%), Positives = 333/495 (67%), Gaps = 62/495 (12%)
Query: 69 GGYSRTPLETAGACELIDND----TGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDP 124
GY+R +++AG +L D D T + + + G + D D
Sbjct: 54 AGYARKSVDSAGVYQLTDEDDFTVTSSEELRYDGDETVDDED------------------ 95
Query: 125 SQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRL- 183
T +R K+ I SF RLK Q+VKA+V K G +T L+ + R
Sbjct: 96 ----TKTSGMR--------KRISIGSFGRLKTQKVKAIVTK----GSRTNEELRNDVRKP 139
Query: 184 --SKTTPSLENF-----RELGE--------HIVDNDVPAESIDKNISDYN----SRSNKH 224
+P + ++ + +GE ++ N P+E D+ SRS
Sbjct: 140 TPEDGSPHISDYPRSKVKTMGEKKRINALRNVEKNSRPSELQDRERHQTTAPNLSRSEPL 199
Query: 225 EKSGT-KIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESL 283
SG+ RGW S G + +YEPT+ +Q K S++ F+SRKSFKELGCS+YMIESL
Sbjct: 200 VSSGSGSYFRGWGSRGP-YGSEYEPTEHKQQ--KISSEKGFYSRKSFKELGCSEYMIESL 256
Query: 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343
+RQNF+RPSQIQA AF V++GKSCI++DQSGSGKTLAYL+P+IQRLRQEEL+G KS+S
Sbjct: 257 RRQNFVRPSQIQAKAFSSVIDGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGHQKSSS 316
Query: 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIAT 403
SP++VI+ PTAELASQVLSNCRS+SK GVPFRSMVVTGGFRQKTQL+NLQEGVDVLIAT
Sbjct: 317 KSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIAT 376
Query: 404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463
PGR M LI EG L L NLRCA++DEVDILFNDEDFEVAL+SL+ S+PV QYLFVTATLP
Sbjct: 377 PGRLMLLINEGFLLLSNLRCAVMDEVDILFNDEDFEVALRSLMKSAPVNTQYLFVTATLP 436
Query: 464 VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
V+IYN LVE FPDC+V+MGPG+HRISP LEE LVDCSG+ E KTP+ AF NKK ALLQ+
Sbjct: 437 VDIYNTLVENFPDCEVIMGPGVHRISPSLEEVLVDCSGEDEQHKTPDAAFSNKKDALLQI 496
Query: 524 IEKSPVSKTIVFCNK 538
E +PV KTIVFCNK
Sbjct: 497 AEGTPVLKTIVFCNK 511
>gi|147854298|emb|CAN83429.1| hypothetical protein VITISV_034872 [Vitis vinifera]
Length = 563
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/335 (71%), Positives = 271/335 (80%), Gaps = 29/335 (8%)
Query: 233 RGWRSGGSIHNLQYEPTDCPKQRHKYS--ADGDFFSRKSFKELGCSDYMIESLKRQNFLR 290
+GW G ++ N ++E T+ PK+R K + AD DFFS KSF++LGCSDYMIESL+ Q F+R
Sbjct: 92 QGWGYGETMRNFEFETTNIPKRRGKGNSLADSDFFSGKSFRDLGCSDYMIESLRGQLFVR 151
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
PS IQAMAF V+EGKSCI+ADQSGSGKTLAYLLPVIQRLR+EELQGL KS++G PRVVI
Sbjct: 152 PSHIQAMAFATVMEGKSCIIADQSGSGKTLAYLLPVIQRLREEELQGLGKSSAGCPRVVI 211
Query: 351 LAPTAELASQ---------------------------VLSNCRSLSKCGVPFRSMVVTGG 383
L PTAELASQ VLSNCRS+SK G PFRSM TGG
Sbjct: 212 LVPTAELASQMRFCYVCGSFNANNVVQEHKDKTIHTKVLSNCRSISKFGAPFRSMAATGG 271
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
FRQ+TQLENLQ+ +DVLIATPGRFMFLIKEG LQL NLRCA+LDEVDIL NDEDFE+ALQ
Sbjct: 272 FRQRTQLENLQQDLDVLIATPGRFMFLIKEGFLQLTNLRCAVLDEVDILLNDEDFELALQ 331
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+LI+SSPVT QYLFVTATLPV IYNKLVEVFPDC+V+MGPGMHRIS LEE LVDCSGD
Sbjct: 332 TLINSSPVTMQYLFVTATLPVGIYNKLVEVFPDCEVIMGPGMHRISSRLEEVLVDCSGDD 391
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
++KTPE+AFLNKKSALLQL+E SPVS+TIVFCNK
Sbjct: 392 GTEKTPESAFLNKKSALLQLVEGSPVSRTIVFCNK 426
>gi|297829242|ref|XP_002882503.1| hypothetical protein ARALYDRAFT_478019 [Arabidopsis lyrata subsp.
lyrata]
gi|297328343|gb|EFH58762.1| hypothetical protein ARALYDRAFT_478019 [Arabidopsis lyrata subsp.
lyrata]
Length = 782
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/325 (70%), Positives = 271/325 (83%), Gaps = 4/325 (1%)
Query: 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQY--EPTDCPKQRHKYSA--DGDFFSRKSFKEL 273
N R H D R G ++ Y + D + R+K +A + FFSRK+F E+
Sbjct: 321 NERGGSHSSYSKGSDTNSRGWGDRRSVVYARDMDDWRENRNKTNATRETGFFSRKTFAEI 380
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
GCS+ M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+P IQRLR+E
Sbjct: 381 GCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPAIQRLREE 440
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
ELQG SKS+SG PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL
Sbjct: 441 ELQGQSKSSSGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENL 500
Query: 394 QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA 453
++GVDVLIATPGRFM+L+ EGIL L NLRCAILDEVDILF D++FE ALQSLI+SSPVTA
Sbjct: 501 EQGVDVLIATPGRFMYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQSLINSSPVTA 560
Query: 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
QYLFVTATLP+EIYNKLVEVFPDC+VVMGP +HR+S LEEFLVDCSGD ++KTPETAF
Sbjct: 561 QYLFVTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAF 620
Query: 514 LNKKSALLQLIEKSPVSKTIVFCNK 538
NKK+ALLQ+IE++PVSKTI+FCNK
Sbjct: 621 QNKKTALLQIIEENPVSKTIIFCNK 645
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 21/113 (18%)
Query: 56 VVLVRASGGDGG---GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPK 112
+V + +GG GG G+ R PLET+ + D+ T E ++ D +++ PP P
Sbjct: 24 IVRLFRNGGSGGVVARAGFVRRPLETSSS---YDDSTDEGFVIISSVDKENEFSPP-PTP 79
Query: 113 HLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDK 165
LL S PS+ T RN S GV +SF RLKAQ+VKA+V K
Sbjct: 80 DLLSSI-----PSESTR-----RNGSRS----GGVTASFGRLKAQKVKALVGK 118
>gi|413957214|gb|AFW89863.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 649
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/513 (48%), Positives = 336/513 (65%), Gaps = 53/513 (10%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQG--------------------IGNFGRFKAQKIKSLVTRSAHRKR 128
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 129 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 188
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 189 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 245
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 246 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 305
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 306 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 365
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E FE L L
Sbjct: 366 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGFEQVLHQL 425
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
I+ +PVT QYLFVTATLP++IYNK+VE FPDC+V+MGPG+HR S LEE LVDCSGD
Sbjct: 426 ITVAPVTTQYLFVTATLPLDIYNKVVETFPDCEVIMGPGVHRTSSRLEEILVDCSGDDNE 485
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+K PETAF NKK+ALL++IE+SPV KTIVFCNK
Sbjct: 486 EKNPETAFSNKKTALLKIIEESPVRKTIVFCNK 518
>gi|224107012|ref|XP_002314343.1| predicted protein [Populus trichocarpa]
gi|222863383|gb|EEF00514.1| predicted protein [Populus trichocarpa]
Length = 425
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 219/278 (78%), Positives = 258/278 (92%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
+ DFFSRKSF++LGC+D+MIESLK Q F+RPS IQAMAF PV++GKSCI+ADQSGSGKT+
Sbjct: 10 ENDFFSRKSFRDLGCTDFMIESLKGQVFVRPSHIQAMAFAPVIDGKSCIIADQSGSGKTM 69
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
AYL+P+IQRLRQEELQGL +S+S SPRV+IL PTAELASQVL+NCRS+SK GVPFRSMVV
Sbjct: 70 AYLIPLIQRLRQEELQGLGQSSSQSPRVLILVPTAELASQVLNNCRSMSKHGVPFRSMVV 129
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
TGGFRQ+TQLENL++GVDVLIATPGRFMFLIKEG L+L NL+CA+LDE+DILFNDE+FE
Sbjct: 130 TGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGFLKLQNLKCAVLDEIDILFNDENFEA 189
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+LQ LI+SSPVT QYLFVTATLPV++ NKL+EVFPDC+V+MGPG+HR S LEE LVDCS
Sbjct: 190 SLQGLINSSPVTTQYLFVTATLPVDVCNKLIEVFPDCEVIMGPGVHRTSARLEEILVDCS 249
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
G+ E++KTPETAFLNKKSALLQL+E+SPVSKTI+FCNK
Sbjct: 250 GEIEAEKTPETAFLNKKSALLQLVEQSPVSKTIIFCNK 287
>gi|15231353|ref|NP_187354.1| DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana]
gi|108861898|sp|Q8GUG7.2|RH50_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 50
gi|6729005|gb|AAF27002.1|AC016827_13 putative DEAD/DEAH box helicase [Arabidopsis thaliana]
gi|15081735|gb|AAK82522.1| AT3g06980/F17A9_13 [Arabidopsis thaliana]
gi|16519315|emb|CAC82719.1| DEAD-box RNA Helicase [Arabidopsis thaliana]
gi|21360513|gb|AAM47372.1| AT3g06980/F17A9_13 [Arabidopsis thaliana]
gi|332640962|gb|AEE74483.1| DEAD-box ATP-dependent RNA helicase 50 [Arabidopsis thaliana]
Length = 781
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/321 (69%), Positives = 269/321 (83%), Gaps = 4/321 (1%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
DVLIATPGRF +L+ EGIL L NLRCAILDEVDILF D++FE ALQ+LI+SSPVTAQYLF
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563
Query: 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
VTATLP+EIYNKLVEVFPDC+VVMGP +HR+S LEEFLVDCSGD ++KTPETAF NKK
Sbjct: 564 VTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKK 623
Query: 518 SALLQLIEKSPVSKTIVFCNK 538
+ALLQ++E++PVSKTI+FCNK
Sbjct: 624 TALLQIMEENPVSKTIIFCNK 644
>gi|226502877|ref|NP_001146459.1| uncharacterized protein LOC100280046 [Zea mays]
gi|219887353|gb|ACL54051.1| unknown [Zea mays]
gi|413957213|gb|AFW89862.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 655
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/513 (48%), Positives = 336/513 (65%), Gaps = 47/513 (9%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ + +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQGVGGGTGI--------------GNFGRFKAQKIKSLVTRSAHRKR 134
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 135 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 194
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 195 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 251
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 252 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 311
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 312 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 371
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E FE L L
Sbjct: 372 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGFEQVLHQL 431
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
I+ +PVT QYLFVTATLP++IYNK+VE FPDC+V+MGPG+HR S LEE LVDCSGD
Sbjct: 432 ITVAPVTTQYLFVTATLPLDIYNKVVETFPDCEVIMGPGVHRTSSRLEEILVDCSGDDNE 491
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+K PETAF NKK+ALL++IE+SPV KTIVFCNK
Sbjct: 492 EKNPETAFSNKKTALLKIIEESPVRKTIVFCNK 524
>gi|255556636|ref|XP_002519352.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223541667|gb|EEF43216.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 594
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 235/409 (57%), Positives = 303/409 (74%), Gaps = 21/409 (5%)
Query: 148 ISSFSRLKAQRVKAVVDKRSAMGKKTVNAL----KQEGRLSKTTPSLENFRELGEHIVDN 203
+ +F +LKAQ++K ++ + +M +K + + + + S N +
Sbjct: 52 MGAFGKLKAQKLKVLMRRAESMKQKVTKNVHVPPRADPHFHDSVISDTNSNSTASVTQGS 111
Query: 204 DVPAESI----DKNISDYNS--RSNKHEKSGTKIDRGWRSGGSIHNLQYEP--------T 249
AE+I K+I ++S + +KH+ S R G + Y T
Sbjct: 112 ---AETIVTRAGKDIKSFSSSVKHDKHQMSDHVFRRSGAEGSAPATSSYFSGWANVGLTT 168
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCI 309
++HK+SA+ DFFSRKSF++LGCS++MIESLK Q FLRPS IQAM+F PV+EGKSC+
Sbjct: 169 KSIHRQHKFSAENDFFSRKSFRDLGCSEFMIESLKGQGFLRPSPIQAMSFTPVIEGKSCV 228
Query: 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
+ADQSGSGKTLAYL+P+IQRLR EELQGL +S SP+++I+ PTAELASQVL NCRS+S
Sbjct: 229 IADQSGSGKTLAYLVPIIQRLRLEELQGLGESFPQSPQILIMVPTAELASQVLYNCRSMS 288
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
K GVPFRSM VTGGF Q+TQLENL++GV+VLIATPGRFMFL+KEG L+L NL+CA+LDEV
Sbjct: 289 KFGVPFRSMAVTGGFSQRTQLENLEQGVNVLIATPGRFMFLVKEGFLKLSNLKCAVLDEV 348
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS 489
D+LFNDE+FEVAL+SL+++SPV +QYLFVTATLPV +YNKL+E+FPDC VVMGPGMHR S
Sbjct: 349 DVLFNDEEFEVALKSLMNASPVRSQYLFVTATLPVGVYNKLIEIFPDCGVVMGPGMHRTS 408
Query: 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
LEE LVDCSG+ +D+TPETAFLNKKSALLQ++E+ PV K+IVFCNK
Sbjct: 409 ARLEEVLVDCSGEIGADRTPETAFLNKKSALLQVVEQRPVLKSIVFCNK 457
>gi|27311829|gb|AAO00880.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
Length = 781
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/321 (69%), Positives = 268/321 (83%), Gaps = 4/321 (1%)
Query: 220 RSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKY--SADGDFFSRKSFKELGCSD 277
R H K RGW S+ + D ++R+K + + FFSRK+F E+GCS+
Sbjct: 326 RGGSHSKGSDTNSRGWGDRRSV--VYTRDMDDWRERNKTKDTRETGFFSRKTFAEIGCSE 383
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++LK QNF RP+ IQAMAF PV++GKSCI+ADQSGSGKTLAYL+PVIQRLR+EELQG
Sbjct: 384 DMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQG 443
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
SKS+ G PRV++L PTAELASQVL+NCRS+SK GVPFRSMVVTGGFRQ+TQLENL++GV
Sbjct: 444 HSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGV 503
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
DVLIATPGRF +L+ EGIL L NLR AILDEVDILF D++FE ALQ+LI+SSPVTAQYLF
Sbjct: 504 DVLIATPGRFTYLMNEGILGLSNLRFAILDEVDILFGDDEFEAALQNLINSSPVTAQYLF 563
Query: 458 VTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
VTATLP+EIYNKLVEVFPDC+VVMGP +HR+S LEEFLVDCSGD ++KTPETAF NKK
Sbjct: 564 VTATLPLEIYNKLVEVFPDCEVVMGPRVHRVSNALEEFLVDCSGDDNAEKTPETAFQNKK 623
Query: 518 SALLQLIEKSPVSKTIVFCNK 538
+ALLQ++E++PVSKTI+FCNK
Sbjct: 624 TALLQIMEENPVSKTIIFCNK 644
>gi|143456346|sp|Q0DVX2.2|RH50_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 50
gi|108705771|gb|ABF93566.1| DEAD/DEAH box helicase, putative, expressed [Oryza sativa Japonica
Group]
gi|215686822|dbj|BAG89672.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624050|gb|EEE58182.1| hypothetical protein OsJ_09113 [Oryza sativa Japonica Group]
Length = 641
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/478 (50%), Positives = 319/478 (66%), Gaps = 39/478 (8%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 58 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 107
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE--- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 108 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESDE 156
Query: 192 -----------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS 240
N R+ D A S++ + Y ++ + G++ G + G+
Sbjct: 157 DGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWGN 215
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 216 ISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYR 272
Query: 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELASQ
Sbjct: 273 PVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQ 332
Query: 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
VL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL N
Sbjct: 333 VLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNN 392
Query: 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
LRC +LDEVDIL+ +E FE L LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++
Sbjct: 393 LRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELI 452
Query: 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
MGPG+HR S LEE LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNK
Sbjct: 453 MGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNK 510
>gi|115450203|ref|NP_001048702.1| Os03g0108600 [Oryza sativa Japonica Group]
gi|113547173|dbj|BAF10616.1| Os03g0108600, partial [Oryza sativa Japonica Group]
Length = 653
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/478 (50%), Positives = 319/478 (66%), Gaps = 39/478 (8%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 70 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 119
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE--- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 120 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESDE 168
Query: 192 -----------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS 240
N R+ D A S++ + Y ++ + G++ G + G+
Sbjct: 169 DGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWGN 227
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 228 ISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYR 284
Query: 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELASQ
Sbjct: 285 PVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQ 344
Query: 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLIN 420
VL+NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL N
Sbjct: 345 VLNNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNN 404
Query: 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
LRC +LDEVDIL+ +E FE L LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++
Sbjct: 405 LRCVVLDEVDILYGEESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELI 464
Query: 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
MGPG+HR S LEE LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNK
Sbjct: 465 MGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNK 522
>gi|326514124|dbj|BAJ92212.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 654
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/499 (49%), Positives = 321/499 (64%), Gaps = 45/499 (9%)
Query: 64 GDGGGGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKD 123
G+ GG GY R ++T GA L+D TG+ VIVWGG DD D P +P +L ++
Sbjct: 46 GEDGGRGYERVAMDTPGAYRLVDRSTGKSVIVWGGVDDGED--PSVPSPAVLSRVTADRS 103
Query: 124 PSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRL 183
S+ + S GV SF RLKAQ+V+A + +++ LK+EG
Sbjct: 104 ASKGAANGG----------SSAGV-GSFGRLKAQKVQA-------LARRSAAQLKREGTS 145
Query: 184 SKTT-------PSLENFRELGEHIVDNDVP--AESIDKNISDYNSRSNKHEKSGTKIDRG 234
S+T+ PS ++ E VP A N ++R++ +S + R
Sbjct: 146 SRTSIAQRNEPPSADSDEEGNNSGRRKFVPDPARRAKPNGDSRDARTSA-VRSLNSVLRQ 204
Query: 235 WRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKELGCSDYM 279
++ EP PK ++ K D FFSR+SFKE+GC D +
Sbjct: 205 YKGDDDSDFSDEEPASGPKVWGKVADVTSYRREDRKQKVPLDSGFFSRRSFKEIGCGDEI 264
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+ +L F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P++Q LR+EE G+
Sbjct: 265 LGALTTFGFPQPSHIQAMAYAPVLEGRSCIIADQSGSGKTLAYLCPIVQNLRKEEAMGIH 324
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
K + +PRVVIL PTAEL+SQVL NCRS+SK GVPFRSMV TGGFRQKTQLE+L + +DV
Sbjct: 325 KPSPRNPRVVILTPTAELSSQVLQNCRSISKSGVPFRSMVATGGFRQKTQLESLDQELDV 384
Query: 400 LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
LIATPGRF++L++EG +QL NLRCA+ DEVDILF++E FE L LI+ +PVT QYLFVT
Sbjct: 385 LIATPGRFLYLLQEGFVQLNNLRCAVFDEVDILFSEEGFEQVLHQLITIAPVTTQYLFVT 444
Query: 460 ATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
ATLP++IYNK+VE FPDC+V+MGP +HR S LEE LVDCSG+ +K PETAF NK++A
Sbjct: 445 ATLPLDIYNKVVETFPDCEVLMGPSVHRTSARLEEILVDCSGNDNDEKNPETAFSNKRTA 504
Query: 520 LLQLIEKSPVSKTIVFCNK 538
LL++IE+SPV KTIVFCNK
Sbjct: 505 LLKIIEESPVRKTIVFCNK 523
>gi|218191936|gb|EEC74363.1| hypothetical protein OsI_09674 [Oryza sativa Indica Group]
Length = 620
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/464 (51%), Positives = 317/464 (68%), Gaps = 32/464 (6%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 58 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 107
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFR 194
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E+
Sbjct: 108 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDES-D 155
Query: 195 ELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQ 254
E G + + A + K + ++ G++ G + G+I ++ + + Q
Sbjct: 156 EDGAYFERDR--ARNTGKTVDLETTKPR-----GSEATSGSKRWGNISDVTFGRQN---Q 205
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
R K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+ PV+EGKSCI+ DQS
Sbjct: 206 RQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQS 265
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
GSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELASQVL+NCRS+SK GVP
Sbjct: 266 GSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQVLNNCRSISKSGVP 325
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434
FRSMV TGGFRQKTQLE+L + +DVLIATPGRF++L++EG +QL NLRC +LDEVDIL+
Sbjct: 326 FRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYG 385
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
+E FE L LI+ +P+T QYLFVTATLP++IYNK+VE FPDC+++MGPG+HR S LEE
Sbjct: 386 EESFEQVLHQLITVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEE 445
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNK
Sbjct: 446 ILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNK 489
>gi|356516407|ref|XP_003526886.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
max]
Length = 530
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/394 (59%), Positives = 280/394 (71%), Gaps = 43/394 (10%)
Query: 148 ISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLENFRELGEHIVDNDVPA 207
SSF RLKAQ+VK ++ R + S P H+ D+D
Sbjct: 44 FSSFGRLKAQKVKTLLVHRRGKDQ------------SHRRPV---------HLEDDD--- 79
Query: 208 ESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR 267
D + RS + G + D P P + K +D FFS
Sbjct: 80 ---DYVATPRPRRSQSRTRGGERWD-------------MIPNYTPPAQSKSVSDTKFFSL 123
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFKE+GCS+YMIESL++ F RPS +QAMAF PV+ GK+C++ADQSGSGKT AYL P+I
Sbjct: 124 KSFKEIGCSEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVIADQSGSGKTFAYLAPII 183
Query: 328 QRLRQEELQGL---SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
QRLRQ+EL+G+ S S + SPRV++LAPTAELASQVL NCRSLSK GVPF+SMVVTGGF
Sbjct: 184 QRLRQQELEGIISKSSSQAPSPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGF 243
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
RQKTQLENLQ+GVDVLIATPGRF+FLI +G L L NLRCA+LDEVDILF DEDFEVALQS
Sbjct: 244 RQKTQLENLQQGVDVLIATPGRFLFLINQGFLHLTNLRCAVLDEVDILFGDEDFEVALQS 303
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
LI+SSPV QYLFVTATLP +Y KLVEVFPDC+++MGPGMHRIS L+E +VDCSG+
Sbjct: 304 LINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDG 363
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+KTP+TAFLNKK+ALLQL+E+SPV +TIVFCNK
Sbjct: 364 QEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNK 397
>gi|356507351|ref|XP_003522431.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine
max]
Length = 528
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/283 (75%), Positives = 247/283 (87%), Gaps = 1/283 (0%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K + D FFS KSFKE+GCS+YMIESL++ RPS +QAMAF PV+ GK+C++ADQSGS
Sbjct: 113 KSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGS 172
Query: 317 GKTLAYLLPVIQRLRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
GKTLAYL P+IQ LR EEL+G S KS+S +PRV++LAPTAELASQVL NCRSLSK GVPF
Sbjct: 173 GKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPF 232
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
+SMVVTGGFRQKTQLENLQ+GVDVLIATPGRF+FLI EG LQL NLRCAILDEVDILF D
Sbjct: 233 KSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLRCAILDEVDILFGD 292
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
EDFEVALQSLI+SSPV QYLFVTATLP +Y KLVEVFPDC+++MGPGMHRIS L+E
Sbjct: 293 EDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEI 352
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+VDCSG+ +KTP+TAFLNKK+ALLQL+E++PV +TIVFCNK
Sbjct: 353 IVDCSGEDGQEKTPDTAFLNKKTALLQLVEENPVPRTIVFCNK 395
>gi|47077008|dbj|BAD18438.1| unnamed protein product [Homo sapiens]
Length = 528
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/283 (75%), Positives = 247/283 (87%), Gaps = 1/283 (0%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K + D FFS KSFKE+GCS+YMIESL++ RPS +QAMAF PV+ GK+C++ADQSGS
Sbjct: 113 KSATDTKFFSLKSFKEIGCSEYMIESLQKLLLSRPSHVQAMAFAPVISGKTCVIADQSGS 172
Query: 317 GKTLAYLLPVIQRLRQEELQGLS-KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
GKTLAYL P+IQ LR EEL+G S KS+S +PRV++LAPTAELASQVL NCRSLSK GVPF
Sbjct: 173 GKTLAYLAPIIQLLRLEELEGRSSKSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGVPF 232
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
+SMVVTGGFRQKTQLENLQ+GVDVLIATPGRF+FLI EG LQL NLRCAILDEVDILF D
Sbjct: 233 KSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLIHEGFLQLTNLRCAILDEVDILFGD 292
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
EDFEVALQSLI+SSPV QYLFVTATLP +Y KLVEVFPDC+++MGPGMHRIS L+E
Sbjct: 293 EDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEI 352
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+VDCSG+ +KTP+TAFLNKK+ALLQL+E++PV +TIVFCNK
Sbjct: 353 IVDCSGEDGQEKTPDTAFLNKKTALLQLVEENPVPRTIVFCNK 395
>gi|242042555|ref|XP_002468672.1| hypothetical protein SORBIDRAFT_01g050040 [Sorghum bicolor]
gi|241922526|gb|EER95670.1| hypothetical protein SORBIDRAFT_01g050040 [Sorghum bicolor]
Length = 656
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/502 (48%), Positives = 324/502 (64%), Gaps = 58/502 (11%)
Query: 70 GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTT 129
G+ + P++T GA L+D TG VIVWGGTDD + P P L + ++ SQ
Sbjct: 49 GFDKVPMDTPGAYRLVDRATGRSVIVWGGTDDGDEAAIP-SPAVLSRTRTTDRRSSQGVG 107
Query: 130 SAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQ-----EGRLS 184
+ +F RLKAQ++K++V RSA K+ ++ E
Sbjct: 108 GGTGI--------------GNFGRLKAQKIKSLV-TRSAHRKRESSSRSSTNRSGESSFD 152
Query: 185 KTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKI------------- 231
+ E++ E + + D++ A K SDY + + S T +
Sbjct: 153 GSGDEEESYFERRKPVSDSEHRA----KLSSDYRNGRTRGAHSLTSVLGQYRGADDTGFP 208
Query: 232 -------DRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFFSRKSFKELGCS 276
+GW G++ ++ Y EP + P++ K D FFSR++FKE+GCS
Sbjct: 209 ASEATSGSKGW---GNVADVTYGRQNQKQREPLNFPQR--KGPLDSGFFSRRTFKEIGCS 263
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
D ++ L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P+IQ LR EE+Q
Sbjct: 264 DEILVVLRNFDFPRPSHIQAMAYGPILEGRSCVIADQSGSGKTLAYLCPIIQNLRSEEVQ 323
Query: 337 GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG 396
GL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFRQKTQLE+L +
Sbjct: 324 GLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFRQKTQLESLNQE 383
Query: 397 VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYL 456
+DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E FE L LI+ +PVT QYL
Sbjct: 384 LDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEEGFEQVLHQLITVAPVTTQYL 443
Query: 457 FVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNK 516
FVTATLP++IYNK+VE FPDC+V+MGPG+HR S LEE LVDCSGD +K PETAF NK
Sbjct: 444 FVTATLPLDIYNKVVETFPDCEVIMGPGVHRTSSRLEEILVDCSGDDNEEKNPETAFSNK 503
Query: 517 KSALLQLIEKSPVSKTIVFCNK 538
KSALL++IE+SPV +TI+FCNK
Sbjct: 504 KSALLKIIEESPVRRTIIFCNK 525
>gi|357156184|ref|XP_003577369.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 2
[Brachypodium distachyon]
Length = 662
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 247/506 (48%), Positives = 316/506 (62%), Gaps = 58/506 (11%)
Query: 68 GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHD-HDPPIPPKHLLDSSNWNKDPSQ 126
G GY R ++T GA L+D TG+ VIVWGG DDD +P +P +L S+
Sbjct: 49 GEGYERVAMDTPGAYRLVDRRTGKSVIVWGGIDDDDGGEEPSVPSPAVL---------SR 99
Query: 127 PTTSAPVLRNNDCSIPSKKGV------ISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE 180
T S N D S SK + SF RLKAQ+V+ + ++++ LK+E
Sbjct: 100 STHSG----NTDSSSLSKGAANSGSSGVGSFGRLKAQKVQD-------LARRSLANLKRE 148
Query: 181 -----------GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHE--KS 227
S +E + G ++ PA N NSR K +S
Sbjct: 149 PTSSRTSTTRRNESSFVDKKVEGESDFGRRKYGSEYPARRAKPN---NNSRDEKTREVRS 205
Query: 228 GTKIDRGWRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKE 272
+ R +R G E T PK ++ K D FFSR+SFKE
Sbjct: 206 LDSVLRQYRGDGDSDFRSEEATSGPKVWGKVADATSYRREDRKQKVPLDSGFFSRRSFKE 265
Query: 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332
+GC D ++ +L+ F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P+IQ LR+
Sbjct: 266 IGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQNLRK 325
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
EE G+ KS+ +PRV+IL PTAEL+SQVL NCRS+SK G PFRSMV TGGFRQKTQLE+
Sbjct: 326 EEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQLES 385
Query: 393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
L++ +DVLIATPGRF++L++EG +QL NLRC + DEVDILF +E FE L LI+ +PVT
Sbjct: 386 LEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGFEQVLHQLITVAPVT 445
Query: 453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512
QYLFVTATLP++IYNK+VE FPDC+V+MGP +HR S LEE LVDCSGD +K PETA
Sbjct: 446 TQYLFVTATLPLDIYNKVVETFPDCEVIMGPSIHRTSARLEEILVDCSGDDNDEKNPETA 505
Query: 513 FLNKKSALLQLIEKSPVSKTIVFCNK 538
F NKK AL+++IE+SPV KTIVFCNK
Sbjct: 506 FSNKKLALVKIIEESPVRKTIVFCNK 531
>gi|357156181|ref|XP_003577368.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 1
[Brachypodium distachyon]
Length = 651
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/499 (48%), Positives = 311/499 (62%), Gaps = 55/499 (11%)
Query: 68 GGGYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQP 127
G GY R ++T GA L+D TG+ VIVWGG DDD + P P
Sbjct: 49 GEGYERVAMDTPGAYRLVDRRTGKSVIVWGGIDDDDGGEEPSVP---------------- 92
Query: 128 TTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQE------- 180
+ A + R+ + S + SF RLKAQ+V+ + ++++ LK+E
Sbjct: 93 -SPAVLSRSTHSAANSGSSGVGSFGRLKAQKVQD-------LARRSLANLKREPTSSRTS 144
Query: 181 ----GRLSKTTPSLENFRELGEHIVDNDVPAESIDKNISDYNSRSNKHE--KSGTKIDRG 234
S +E + G ++ PA N NSR K +S + R
Sbjct: 145 TTRRNESSFVDKKVEGESDFGRRKYGSEYPARRAKPN---NNSRDEKTREVRSLDSVLRQ 201
Query: 235 WRSGGSIHNLQYEPTDCPK---------------QRHKYSADGDFFSRKSFKELGCSDYM 279
+R G E T PK ++ K D FFSR+SFKE+GC D +
Sbjct: 202 YRGDGDSDFRSEEATSGPKVWGKVADATSYRREDRKQKVPLDSGFFSRRSFKEIGCGDEI 261
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+ +L+ F +PS IQAMA+ PV+EG+SCI+ADQSGSGKTLAYL P+IQ LR+EE G+
Sbjct: 262 LGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPIIQNLRKEEAMGVH 321
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
KS+ +PRV+IL PTAEL+SQVL NCRS+SK G PFRSMV TGGFRQKTQLE+L++ +DV
Sbjct: 322 KSSPRNPRVIILTPTAELSSQVLQNCRSISKSGAPFRSMVATGGFRQKTQLESLEQELDV 381
Query: 400 LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
LIATPGRF++L++EG +QL NLRC + DEVDILF +E FE L LI+ +PVT QYLFVT
Sbjct: 382 LIATPGRFLYLLQEGFVQLNNLRCVVFDEVDILFGEEGFEQVLHQLITVAPVTTQYLFVT 441
Query: 460 ATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
ATLP++IYNK+VE FPDC+V+MGP +HR S LEE LVDCSGD +K PETAF NKK A
Sbjct: 442 ATLPLDIYNKVVETFPDCEVIMGPSIHRTSARLEEILVDCSGDDNDEKNPETAFSNKKLA 501
Query: 520 LLQLIEKSPVSKTIVFCNK 538
L+++IE+SPV KTIVFCNK
Sbjct: 502 LVKIIEESPVRKTIVFCNK 520
>gi|24476045|gb|AAN62787.1| Putative DEAD/DEAH box RNA helicase protein [Oryza sativa Japonica
Group]
Length = 758
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 242/533 (45%), Positives = 319/533 (59%), Gaps = 94/533 (17%)
Query: 75 PLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPPKHLLDSSNWNKDPSQPTTSAPVL 134
P++T GA L+D TG VIVWGGTDD P + S + P +P +
Sbjct: 120 PMDTPGAYRLVDRATGRSVIVWGGTDDVSMPSPAV-------LSTTTRVPDRPKENG--- 169
Query: 135 RNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGKKTVNALKQEGRLSKTTPSLE--- 191
+ I +F RLKAQ+VK V+ +RSA K+ + R S++ PS E
Sbjct: 170 ---------RSTSIGNFGRLKAQKVK-VLARRSAHLKREDSGRISTSRFSES-PSDESDE 218
Query: 192 -----------NFRELGEHIVDNDVPAESIDKNISDYNSRSNKHEKSGTKIDRGWRSGGS 240
N R+ D A S++ + Y ++ + G++ G + G+
Sbjct: 219 DGTYFERDRARNTRQNSRSRDDKTRGAHSLNSVLRQYRG-ADDLDFPGSEATSGSKRWGN 277
Query: 241 IHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFP 300
I ++ + + QR K D FFSR+SFKE+GCSD ++ +L+ F RPS IQAMA+
Sbjct: 278 ISDVTFGRQN---QRQKGPLDSGFFSRRSFKEIGCSDEILGALRSFGFPRPSHIQAMAYR 334
Query: 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA-- 358
PV+EGKSCI+ DQSGSGKTLAYL PV+Q LR+EE++GL +S+ +PRVV+L PTAELA
Sbjct: 335 PVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPRVVVLTPTAELASQ 394
Query: 359 --------------------------------SQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
SQVL+NCRS+SK GVPFRSMV TGGFRQ
Sbjct: 395 VFYTLNVILPMFSDCFYAKLGKAGVLIGTFLISQVLNNCRSISKSGVPFRSMVATGGFRQ 454
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
KTQLE+L + +DVLIATPGRF++L++EG +QL NLRC +LDEVDIL+ +E FE L LI
Sbjct: 455 KTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDILYGEESFEQVLHQLI 514
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE------------ 494
+ +P+T QYLFVTATLP++IYNK+VE FPDC+++MGPG+HR S LEE
Sbjct: 515 TVAPLTTQYLFVTATLPLDIYNKVVETFPDCELIMGPGVHRTSSRLEEVGHFLLSSFLRK 574
Query: 495 ---------FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
LVDCSGD +K PETAF NKKSAL+++IE+SPV KTI+FCNK
Sbjct: 575 MFPGDTFWRILVDCSGDDNEEKNPETAFSNKKSALVKIIEESPVRKTIIFCNK 627
>gi|357467561|ref|XP_003604065.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355493113|gb|AES74316.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 568
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/281 (70%), Positives = 233/281 (82%), Gaps = 8/281 (2%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
S D +FFS KSFK +GC+D+MIESL + RPS IQAM+FPPV+ GKSCI+ADQSGSGK
Sbjct: 120 SEDTNFFSLKSFKGIGCADFMIESLHNLSLTRPSNIQAMSFPPVIAGKSCIIADQSGSGK 179
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRS 377
TLAYL+P+IQRLRQ+ELQGL KS+S SP ++ILAPTAELASQV NCRS+SK GV PF+S
Sbjct: 180 TLAYLVPIIQRLRQQELQGLHKSSSQSPTLLILAPTAELASQVFHNCRSISKSGVVPFKS 239
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
M+VTGGFRQKTQL+ L +GVDVLIATPGRF+FLI +G A+LDEVDILF DED
Sbjct: 240 MLVTGGFRQKTQLDTLNQGVDVLIATPGRFLFLINQGFF-------AVLDEVDILFGDED 292
Query: 438 FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497
FE ALQ LISSSPV QYLFVTATLP +Y+KLVEVFPDC++VMGP MHRI+ LEE +V
Sbjct: 293 FEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRINSRLEEIIV 352
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
DCSG+ +KT +TAFLNKK+ALLQL EK+ V +TIVFCNK
Sbjct: 353 DCSGEDGQEKTLDTAFLNKKAALLQLAEKNRVPRTIVFCNK 393
>gi|449498867|ref|XP_004160656.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Cucumis
sativus]
Length = 382
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/237 (77%), Positives = 210/237 (88%)
Query: 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361
V++GKSCI++DQSGSGKTLAYL+P+IQRLRQEEL+G KS+S SP++VI+ PTAELASQV
Sbjct: 9 VIDGKSCIISDQSGSGKTLAYLVPLIQRLRQEELEGHQKSSSKSPQIVIIVPTAELASQV 68
Query: 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL 421
LSNCRS+SK GVPFRSMVVTGGFRQKTQL+NLQEGVDVLIATPGR M LI EG L L NL
Sbjct: 69 LSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLINEGFLLLSNL 128
Query: 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481
RCA++DEVDILFNDEDFEVAL+SL+ S+PV QYLFVTATLPV+IYN LVE FPDC+V+M
Sbjct: 129 RCAVMDEVDILFNDEDFEVALRSLMKSAPVNTQYLFVTATLPVDIYNTLVENFPDCEVIM 188
Query: 482 GPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
GPG+HRISP LEE LVDCSG+ E KTP+ AF NKK ALLQ+ E +PV KTIVFCNK
Sbjct: 189 GPGVHRISPSLEEVLVDCSGEDEQHKTPDAAFSNKKDALLQIAEGTPVLKTIVFCNK 245
>gi|219888667|gb|ACL54708.1| unknown [Zea mays]
Length = 424
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/411 (43%), Positives = 252/411 (61%), Gaps = 53/411 (12%)
Query: 53 GARVVLVRASGGDGGGG-GYSRTPLETAGACELIDNDTGEKVIVWGGTDDDHDHDPPIPP 111
G+R V A+ +G G+ + P++T GA L+D DTG VIVWGGTDD + P P
Sbjct: 32 GSRRSWVAAATAEGDETRGFDKVPMDTPGAYRLVDRDTGRSVIVWGGTDDSDEASMPSPA 91
Query: 112 KHLLDSSNWNKDPSQPTTSAPVLRNNDCSIPSKKGVISSFSRLKAQRVKAVVDKRSAMGK 171
+ S ++ SQ I +F R KAQ++K++V + + +
Sbjct: 92 ---VLSRTTDRRHSQG--------------------IGNFGRFKAQKIKSLVTRSAHRKR 128
Query: 172 KTVN----ALKQEGRLSKTTPSLENFRELGEHIVDNDV--------------PAESIDKN 213
++ N A E + + E++ E +H+ D++ A S+
Sbjct: 129 ESSNRSSTAWSDESSFNGSDDEEESYFERRKHVSDSERHPKMSSGSRDGRTRSAHSLSSV 188
Query: 214 ISDYNSRSNKHEKSGTKIDRGWRSGGSIHNLQY--------EPTDCPKQRHKYSADGDFF 265
+S Y + + G++ G + G++ ++ Y EP + P++ K DG FF
Sbjct: 189 LSQYRG-DDDTDFPGSEATSGSKRWGNVADVTYGRQNQKQREPLNFPQR--KGPLDGGFF 245
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR+SFKE+GCSD M+ +L+ +F RPS IQAMA+ P++EG+SC++ADQSGSGKTLAYL P
Sbjct: 246 SRRSFKEIGCSDEMLGALRNFDFPRPSHIQAMAYGPILEGRSCVVADQSGSGKTLAYLCP 305
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ LR EE+QGL KS+ +PRV++L PTAELASQVL+NCR +SK GVPFRSMV TGGFR
Sbjct: 306 IIQNLRNEEVQGLHKSSPRNPRVIVLTPTAELASQVLNNCRLISKSGVPFRSMVATGGFR 365
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
QKTQLE+L + +DV+IATPGRF++L++EG +QL NLRC +LDEVDILF +E
Sbjct: 366 QKTQLESLDQELDVIIATPGRFLYLLQEGFVQLANLRCVVLDEVDILFGEE 416
>gi|302762591|ref|XP_002964717.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
gi|300166950|gb|EFJ33555.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
Length = 420
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 144/275 (52%), Positives = 198/275 (72%), Gaps = 2/275 (0%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F S K F+ LG S MI +L +RPS+IQA+++ V+ G SCI+ADQ+GSGKTLAYL
Sbjct: 15 FLSTKKFQALGASQEMIAALSSLEIVRPSEIQALSYKQVMRGNSCIIADQTGSGKTLAYL 74
Query: 324 LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
P++QRLR++E +G + ST+ +PRV++LAPT+ELA QVLS CR+LS P +SMV TGG
Sbjct: 75 APLVQRLREDEEKG-NFSTAKNPRVLVLAPTSELAMQVLSVCRALSTT-CPLKSMVATGG 132
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
F+ KTQ+ENL G D+++ATPGRF+ ++E +QL L+ +LDEVDILF +E+F A+Q
Sbjct: 133 FKWKTQVENLASGPDIVVATPGRFLHHLEEETIQLGKLQSVVLDEVDILFEEEEFVEAMQ 192
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ + QY+ VTATLP ++++K+ PD ++GP +H +PGL E LVDCSGD
Sbjct: 193 RVRKLASKDVQYIHVTATLPTDVHDKIFNKHPDSVPLLGPSLHLTAPGLNEILVDCSGDD 252
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+S+KTPE AF NKK LL L+ + V KTI+FCNK
Sbjct: 253 DSEKTPEAAFENKKKELLNLLGEKRVPKTIIFCNK 287
>gi|298710365|emb|CBJ31982.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 613
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 134/277 (48%), Positives = 187/277 (67%), Gaps = 6/277 (2%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
F+S KS ++G SD + +LK +RPS+IQA+++ ++ G C++ADQ+GSGKTLAYL
Sbjct: 209 FYSIKSLPDIGASDLAVSALKSLGVVRPSKIQAISYSAILTGDHCVVADQTGSGKTLAYL 268
Query: 324 LPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
P++QRLR EEL + ++ G PRV+ILAPTAELA QV + LS VPFRS TG
Sbjct: 269 APLVQRLRLEELAEVHGRARPGRPRVLILAPTAELAQQVYGVAQRLSGS-VPFRSCCFTG 327
Query: 383 GFRQ--KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
G + KTQ + L+EGVDVL+ATPGR L++ G+L L + R ILDEVD+LF DE F++
Sbjct: 328 GPGRTFKTQAKLLEEGVDVLVATPGRVATLLEAGVLNLEDCRAVILDEVDVLFMDETFQL 387
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
A + + +P Q++FVTATLP + + L E FP K ++GPG+HR++PG+EE L+DCS
Sbjct: 388 A--PIGTCAPEDTQFIFVTATLPQSVSDMLKEEFPGTKFLLGPGLHRVAPGVEEVLIDCS 445
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
G + ET K+ ALL +E+ +T+VFCN
Sbjct: 446 GPPGEPRNEETGLARKRDALLSQLERRMALRTLVFCN 482
>gi|302756457|ref|XP_002961652.1| hypothetical protein SELMODRAFT_403724 [Selaginella moellendorffii]
gi|300170311|gb|EFJ36912.1| hypothetical protein SELMODRAFT_403724 [Selaginella moellendorffii]
Length = 583
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 125/245 (51%), Positives = 176/245 (71%), Gaps = 6/245 (2%)
Query: 294 IQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353
++A+++ V+ G SCI+ADQ+GSGKTLAYL P++QRLR++E +G + ST+ +PRV++LAP
Sbjct: 218 VKALSYKQVMRGNSCIIADQTGSGKTLAYLAPLVQRLREDEEKG-NFSTAKNPRVLVLAP 276
Query: 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
T+ELA QVLS CR+LS P +SMV TGGF+ KTQ+ENL G D+++ATPGRF+ ++E
Sbjct: 277 TSELAMQVLSVCRALSTT-CPLKSMVATGGFKWKTQVENLASGPDIVVATPGRFLHHLEE 335
Query: 414 GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473
+QL L+ +LDEVDILF +E+F A+Q + + QY+ VTATLP ++++K+
Sbjct: 336 ETIQLGKLQSVVLDEVDILFEEEEFVEAMQRVRKLASKDVQYIHVTATLPTDVHDKIFNK 395
Query: 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTI 533
PD ++GP +H +PGL E LVDCSGD +S+KTPE AF NKK LL L+ + K I
Sbjct: 396 HPDSVPLLGPSLHLTAPGLNEILVDCSGDDDSEKTPEAAFENKKKELLNLLGE----KRI 451
Query: 534 VFCNK 538
C K
Sbjct: 452 ETCRK 456
>gi|307106205|gb|EFN54452.1| hypothetical protein CHLNCDRAFT_135879 [Chlorella variabilis]
Length = 565
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/294 (42%), Positives = 181/294 (61%), Gaps = 8/294 (2%)
Query: 250 DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE--GKS 307
D P R +A FFS + LG S ++ +L+ RPS IQA A+ + + +
Sbjct: 82 DIPVVRPGQAASATFFSSDRWDALGASAEVVAALQTLGITRPSHIQAAAYRALAQSGARH 141
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366
+LAD +GSGKTLAYLLP++Q LR+EE + G + + PR+V++ PTAEL +QV+ CR
Sbjct: 142 VVLADHAGSGKTLAYLLPLLQVLREEERVLGAAATQPHCPRLVVVVPTAELCAQVVRVCR 201
Query: 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426
+LS+ G+ FRS TGG +TQ E L+ GVDVL+ TPGR L+ EG LQL R A++
Sbjct: 202 ALSRAGLRFRSAAATGGRPLRTQKEMLEGGVDVLVGTPGRLAELLGEGCLQLTFCR-AVV 260
Query: 427 DEVDILFNDEDFEVALQ--SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
+ + EDF A Q L +++P T +++F TAT+P ++Y L E FP +GPG
Sbjct: 261 VDEVDVLLGEDFAFAEQVAPLRAAAPSTTRFVFATATIPEQVYLDLEEAFPGLAAALGPG 320
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+HR +PG+ E LVDCSG E + E+ F K +AL ++++ S++IVFCNK
Sbjct: 321 LHRTAPGITEQLVDCSGGDEV--SAESGFQRKAAALFAVLQEQRASRSIVFCNK 372
>gi|384248412|gb|EIE21896.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 394
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/264 (46%), Positives = 172/264 (65%), Gaps = 8/264 (3%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
M+++L+ RPS IQA A+ + G + +LAD +GSGKTLAYLLP++Q LR+EE Q
Sbjct: 1 MVKALRGIGIERPSYIQAAAYQVLTSGARHIVLADHAGSGKTLAYLLPLVQALREEE-QS 59
Query: 338 LSKSTS--GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE 395
L S + +PRV+ILAPT EL +QVL R L+K G PFRS+ +TGGF+ +TQ E L E
Sbjct: 60 LCDSLTMRNAPRVIILAPTTELCAQVLMVARGLAK-GAPFRSIALTGGFKWRTQKEALDE 118
Query: 396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE-DFEVALQSLISSSPVTAQ 454
GVDV++ATPGR IK G L+L R +LDEVD+L D F + L +++P +
Sbjct: 119 GVDVVVATPGRLGEHIKAGNLRLDQCRAVVLDEVDVLLGDTFAFAQQVAPLRAAAPEATR 178
Query: 455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
++ VTATL +Y +L + FP GPG+HR +PG+ E LVDCSG ++ +T F
Sbjct: 179 FVLVTATLAENVYLQLQQDFPGITPAFGPGLHRTAPGVLEQLVDCSGGDVINE--DTGFE 236
Query: 515 NKKSALLQLIEKSPVSKTIVFCNK 538
K +ALL+++ + ++TIVFCNK
Sbjct: 237 RKSAALLRVLREQDCTRTIVFCNK 260
>gi|302829735|ref|XP_002946434.1| hypothetical protein VOLCADRAFT_86719 [Volvox carteri f.
nagariensis]
gi|300268180|gb|EFJ52361.1| hypothetical protein VOLCADRAFT_86719 [Volvox carteri f.
nagariensis]
Length = 641
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 179/319 (56%), Gaps = 30/319 (9%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF-------- 299
P D P R G FF+ S++ +G + ++ +LK RPS IQA+AF
Sbjct: 154 PYDLPLVRPDDGDKGTFFAGSSWRHVGAMEEVVSALKTLGISRPSHIQALAFSALCGTGS 213
Query: 300 ----PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSPRVVILAPT 354
P +LADQ+GSGKTLAYL P++Q LRQEEL ++ T G PR +++APT
Sbjct: 214 GTKRAPAPPSAPIVLADQAGSGKTLAYLAPLMQILRQEELAAGTRVTRPGCPRGIVVAPT 273
Query: 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ--------KTQLENLQEGVDVLIATPGR 406
EL QVL R+LS G+ R+ TGG + +TQ L EGVD+L+ATPGR
Sbjct: 274 VELVQQVLRVARALSSAGLRCRTAAFTGGQKDEKARAVSFRTQKGVLGEGVDLLVATPGR 333
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDE-DFEVALQSLISSSPVTAQYLFVTATLPVE 465
++ G L+L + R +LDEVD+L D DF + L +++P + +++ VTATLP
Sbjct: 334 LQKHLQGGTLELTDCRMLVLDEVDVLMGDRADFSAQIVPLHAAAPPSLRFVLVTATLPQH 393
Query: 466 IYNKLVEVFP------DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519
++ +L +V+P + V GPG+HR + GL E LVDCSG E T E+ K A
Sbjct: 394 VFAELKDVWPRGEGEGGIRTVFGPGLHRTAAGLVEELVDCSGGDEV--TEESGRKRKLEA 451
Query: 520 LLQLIEKSPVSKTIVFCNK 538
L L+E+ +T+VFCNK
Sbjct: 452 LKTLLERHRAPRTLVFCNK 470
>gi|159464707|ref|XP_001690583.1| DEAD/DEAH box helicase-related protein [Chlamydomonas reinhardtii]
gi|158280083|gb|EDP05842.1| DEAD/DEAH box helicase-related protein [Chlamydomonas reinhardtii]
Length = 496
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 177/306 (57%), Gaps = 19/306 (6%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---VE 304
P D P R G FF+ +++ +G S+ ++ +LK RPS IQA AF +
Sbjct: 7 PYDLPIVRPYDGDKGTFFAGATWRGVGASEEVVAALKTLGIQRPSHIQAAAFTAFNTHSD 66
Query: 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS-GSPRVVILAPTAELASQVLS 363
+ +LADQ+GSGKT+AYLLP++Q LR +EL + T PR +++APT EL QVL
Sbjct: 67 RSALVLADQAGSGKTMAYLLPLLQALRADELAAGGRVTQPRCPRGIVVAPTVELVQQVLR 126
Query: 364 NCRSLSKCGVPFRSMVVTGG----------FRQKTQLENLQEGVDVLIATPGRFMFLIKE 413
R+LS G+ R+ TGG FR TQ + L EGVD+L+ATPGR + +
Sbjct: 127 VARALSGAGLRLRTAAFTGGQADDKARAASFR--TQRDLLAEGVDLLVATPGRLQQHLAD 184
Query: 414 GILQLINLRCAILDEVDILFNDED-FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472
G L+L + ++DEVD+L + F + L +++P T +++ TATLP I+ +L E
Sbjct: 185 GGLRLDTCKALVMDEVDVLLGERAAFLEQVAPLRAAAPSTMRFMLATATLPQHIFAQLRE 244
Query: 473 VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKT 532
V+PD V GPG+HR + GL E LVDCSG D + ET K AL ++++ ++T
Sbjct: 245 VWPDLMPVFGPGLHRTAAGLVEELVDCSGGD--DISEETGRKRKLEALQTVVDRHKAART 302
Query: 533 IVFCNK 538
IVFCNK
Sbjct: 303 IVFCNK 308
>gi|255079722|ref|XP_002503441.1| predicted protein [Micromonas sp. RCC299]
gi|226518708|gb|ACO64699.1| predicted protein [Micromonas sp. RCC299]
Length = 831
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 181/291 (62%), Gaps = 20/291 (6%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS---CILADQSGSGKT 319
+FFS F +LG SD + E+LK RPS IQ++++ + E S +LADQ+GSGKT
Sbjct: 413 NFFSGARFAQLGASDGVTEALKEMGIERPSHIQSLSYRALTEEDSNDHVLLADQAGSGKT 472
Query: 320 LAYLLPVIQRLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
LAYLLP++QRL + E +G +K T PR+++L PT+ELA QVL R+LS+ G+ RS+
Sbjct: 473 LAYLLPLLQRLAETERTEGRAKPTR--PRMLVLVPTSELAVQVLGVIRTLSRGGLRCRSL 530
Query: 379 VVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
VTGG + +TQ+E ++EG DV++ TPGR +L+++ L +L+ ++DE D+L D
Sbjct: 531 AVTGGDKNSRTQIETIREGCDVVVGTPGRVGWLVQQKKLDPGDLQAVVMDECDVLLGDS- 589
Query: 438 FEVALQ--SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC-KVVMGPGMHRISPGLEE 494
FE A Q L + P +++ VTAT+P ++ +L F +VV GPG+HR + GL E
Sbjct: 590 FEFAEQVAPLRDAVPNATRFVLVTATIPEDVLKQLRAFFDGALRVVQGPGLHRPAAGLLE 649
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLI----EKSPVSKT---IVFCNK 538
LVDCSG D ++ F K +AL QL+ EK ++ ++FCNK
Sbjct: 650 RLVDCSGGDVVDD--QSGFWRKFAALEQLLAAEKEKGTDGRSKRMLLFCNK 698
>gi|412992636|emb|CCO18616.1| predicted protein [Bathycoccus prasinos]
Length = 888
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 183/337 (54%), Gaps = 69/337 (20%)
Query: 264 FFSRKSFKELGCSDYMIESLK-RQNFLRPSQIQAMAFPPVVEGKS--------------- 307
F+S FK++G S+ ++ +L+ R N RPS IQA +F ++ S
Sbjct: 412 FYSGAKFKDIGASELIVNALESRMNISRPSHIQAQSFKILLHDHSDSYDEESSVANDDEG 471
Query: 308 ---CILADQSGSGKTLAYLLPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
+LADQ+GSGKTL+YLLP++QRL R E G+S S PR ++L PT+ELA QV
Sbjct: 472 ANHVLLADQAGSGKTLSYLLPLLQRLERLERDSGMS--VSKRPRALVLVPTSELARQVTE 529
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQK-------------------TQLENLQEGVDVLIATP 404
+ LSK GV RSM+ TGG + TQ + L+ GVD++I TP
Sbjct: 530 VVKELSKGGVRTRSMIATGGASDRTKINRAEQSTRDLTAKFTLTQTKTLKSGVDIVIGTP 589
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS-----SSPVTAQYLFVT 459
GR +L + G ++L +L ILDE D+L D FE A Q I ++P + +++ VT
Sbjct: 590 GRIRYLCETGRMELDDLDSIILDECDVLLGDA-FEFASQ--IKPIKDLANPTSTRFVLVT 646
Query: 460 ATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKK 517
AT+P ++ +L + F D +V+ GPG+HR S G E LVDCSG SD+ ++ F K
Sbjct: 647 ATIPDQVLRELKQFFYPQDIRVIQGPGLHRPSAGTLERLVDCSGGDVSDE--QSGFYRKY 704
Query: 518 SALLQLI----------------EKSPVSKTIVFCNK 538
+AL++++ +K S+T++FCNK
Sbjct: 705 AALMKILRDDILPSTAGTTAKTSKKKSASRTLLFCNK 741
>gi|145351717|ref|XP_001420214.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580447|gb|ABO98507.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 431
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 174/290 (60%), Gaps = 20/290 (6%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQ-NFLRPSQIQAMAFPPV---VEGKSC-------ILAD 312
FFS F +LG SD + +LK RPS IQA ++ + V G S +LAD
Sbjct: 15 FFSGARFNQLGASDEVRAALKESFKIDRPSHIQAQSYRVLSGDVAGASAPRYDGHVLLAD 74
Query: 313 QSGSGKTLAYLLPVIQRLRQEEL-QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371
Q+GSGKTLAYLLP++QR+++ E+ QG SKS PR+++L PT+ELA+QV + LS
Sbjct: 75 QAGSGKTLAYLLPLLQRVQKIEVEQGRSKSKK--PRLLVLTPTSELATQVRDVVKQLSFG 132
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
G+ RS++ + +TQ+E L +GVD+++ TPGR LI+EG + ++ +LDE D+
Sbjct: 133 GLRSRSLLANNVSKSRTQIEALVDGVDIVVGTPGRVARLIEEGKMFTDDVDAVVLDECDV 192
Query: 432 LFNDEDFEVALQSLISSSPVTA--QYLFVTATLPVEIYNKLVEVFP-DCKVVMGPGMHRI 488
L E FE A Q + V + Q++ VTAT+P E+ +L + F D +VV GPG+HR
Sbjct: 193 LLG-ESFEFAEQVAPIRNAVKSDTQFVLVTATIPDEVLKQLKKFFERDIRVVQGPGLHRP 251
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
S G+ E L+DCSG D ++ F K ALL L+E + ++FCNK
Sbjct: 252 SAGMLERLIDCSGGDVFDD--QSGFYRKFKALLDLLEVDKADRALLFCNK 299
>gi|387196760|gb|AFJ68778.1| hypothetical protein NGATSA_2008700, partial [Nannochloropsis
gaditana CCMP526]
Length = 339
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 136/193 (70%), Gaps = 3/193 (1%)
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
SPRVV+LAPTAELA+QV S R+L++ +P R VTGG +TQ E L++GVDVLI TP
Sbjct: 19 SPRVVVLAPTAELAAQVASVARALTR-HMPLRVCCVTGGKNPRTQGEMLKQGVDVLIGTP 77
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464
GR +L++E + L ++ +LDEVD++F D+ F++A+ + +++P Q+LFVTATLPV
Sbjct: 78 GRVQYLLEENKVLLGEMQALVLDEVDVMFLDDSFDLAV--IGAAAPAHTQFLFVTATLPV 135
Query: 465 EIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLI 524
+ +++ FP K + GPG+H+I+P +EE LVDCSG E ++ ET F+ K+ L+Q +
Sbjct: 136 PVADQIAREFPGVKKLWGPGLHKIAPQVEEVLVDCSGPWEEERNEETGFVRKRDMLVQNL 195
Query: 525 EKSPVSKTIVFCN 537
K P +++VFCN
Sbjct: 196 LKHPAPRSLVFCN 208
>gi|219122436|ref|XP_002181551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406827|gb|EEC46765.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 603
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 176/291 (60%), Gaps = 18/291 (6%)
Query: 264 FFSRKS-------FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
FFSRKS ++ G S+ + + RPS+IQ++A+P + +G I+ADQ+GS
Sbjct: 134 FFSRKSLQDPIFAYQTKGASETFAQLCQGAGIARPSKIQSLAWPILCKGSHTIVADQTGS 193
Query: 317 GKTLAYLLPVIQR-LRQEELQGLSKST-SGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
GKTLAYL+P++ R L Q + +GSPR+++LAPTAELA Q+ + C ++ V
Sbjct: 194 GKTLAYLIPLLTRALEDRNAQPAGTAVPNGSPRIIVLAPTAELADQIRAVCEQMT-ASVS 252
Query: 375 FRSMVVTGGFRQKT----QLENLQ-EGVDVLIATPGRFMFLIK--EGILQLINLRCAILD 427
F ++V+T + T Q+ LQ + VDVLI+TPGR +++ L L L+ +LD
Sbjct: 253 FSTLVITATGKYSTSIRDQIRMLQRQPVDVLISTPGRIATILRTRNSGLDLSALQSIVLD 312
Query: 428 EVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH 486
EVD+L D+ F L+++ +++P+ Q++FVTATLP + + + F +++ GPG+H
Sbjct: 313 EVDVLLVDDTFGPQLRTVGAAAPLDRTQFVFVTATLPDTVVETVEKEFRGVQLIKGPGLH 372
Query: 487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
R++P ++E LVD S ++++ + F K LL+ + ++ +T+VFCN
Sbjct: 373 RVAPTVQERLVDVSVPSQNNRDAKLCFDVKAKQLLKALRQTRCRRTLVFCN 423
>gi|224008030|ref|XP_002292974.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971100|gb|EED89435.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 661
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 162/292 (55%), Gaps = 42/292 (14%)
Query: 264 FFSRKSFKELGCS----DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
F+S+KS + S + + + RPS+IQ++A+PP++ G++CI+ADQ+GSGKT
Sbjct: 169 FYSQKSLTDPSFSIPNTSFFPQLCQSAKITRPSRIQSLAWPPLLRGENCIVADQTGSGKT 228
Query: 320 LAYLLPVIQRL----RQEEL-QGLS-----KSTSGSPRVVILAPTAELASQVLSNC---- 365
LAY+LP++Q+L R++E+ + L+ K +GSPR+V+L PTAELA Q+ S C
Sbjct: 229 LAYMLPLLQKLHLSDRKDEMDESLTITQRKKMRTGSPRIVVLTPTAELADQIHSVCTGLN 288
Query: 366 RSLSKCG----VPFRSMVVTGGFRQKT----QLENLQEG-VDVLIATPGRFMFLI--KEG 414
+LSK G F V T T Q+ LQ VDVLI+TPGR ++ K
Sbjct: 289 ENLSKQGGVDAWNFSPFVTTATGSHATNIRDQIRMLQSTPVDVLISTPGRLATILRTKNA 348
Query: 415 ILQLINLRCAILDEVDILFNDEDF-------EVALQS------LISSSPVTAQYLFVTAT 461
L L +++ +LDEVD L DE F VA+QS + Q++FVTAT
Sbjct: 349 GLDLGHVQSMVLDEVDFLLVDETFGPQLRTVGVAVQSGSADKADAADGDKQPQFIFVTAT 408
Query: 462 LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
LP ++ + FP + GPG+HRI+P + + LVD S S++ P F
Sbjct: 409 LPDDVLESIKSEFPSVTELRGPGLHRITPSVHQSLVDVSVPATSNRDPRACF 460
>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 134/226 (59%), Gaps = 10/226 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++E++K + P+++QA+ P V+ G++ ++A +GSGKTLAYLLP++Q
Sbjct: 183 FNDLGLSDEVMEAVKELGLMEPTEVQAIGIPTVLAGENVVMASHTGSGKTLAYLLPIVQA 242
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR++E + + PR V+L PT ELA QV +SL FR+ +V GG R KTQ
Sbjct: 243 LRRDEAASGKFTRARRPRAVVLCPTRELAEQVFRVAKSLCH-HARFRAAMVGGGSRMKTQ 301
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI--- 446
++L + +D+++ATPGR + I++G + +L+ +LDE D +F D+ F V ++ +
Sbjct: 302 EDSLNKAIDLIVATPGRLLMHIEQGNMAYGDLKYVVLDEADTMF-DKGFGVEVRKFLNPL 360
Query: 447 ---SSSPVTA--QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
S P Q + VTAT+ + + L E FP K + +H+
Sbjct: 361 RNRSRQPEGEPFQTVLVTATITKAVQSLLDEEFPGIKHIYTSTLHK 406
>gi|303275115|ref|XP_003056857.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461209|gb|EEH58502.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 533
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 143/276 (51%), Gaps = 20/276 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E G D + + P+ IQ++A P ++ G + ++A +GSGKTL YLLP+I
Sbjct: 95 SFRETGLDDELCAATDALGLETPTDIQSVAIPRILRGGNYMIASHTGSGKTLTYLLPIIH 154
Query: 329 RLRQEE--LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
R+R+EE G ++ PRV++++PT ELA QV +SLS F S +V GG +
Sbjct: 155 RIRREENATVGGGRARPKRPRVLVVSPTRELAEQVAGVAKSLSHHA-RFSSALVIGGDKF 213
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQ 443
TQ L +DV++ TPGR + +KEG + L + +LDE D LF +D V L
Sbjct: 214 ATQRTQLDRSLDVVVGTPGRLVKHVKEGNMYLGRVTHVVLDEADTLFEAGFGDDIRVLLG 273
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
L P + V+AT+ ++ + E P + + P +HR +P L+ VDC G
Sbjct: 274 PL-QKKPEGKSCVIVSATMSDKVVKTIEEDLPGIEKIDTPSLHRAAPNLKHKFVDCPGS- 331
Query: 504 ESDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCN 537
++K + + QLIE KT+VF N
Sbjct: 332 ----------IDKMAVVTQLIEGDFRAGKKTMVFAN 357
>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
gi|226516278|gb|ACO62273.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 403
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 148/275 (53%), Gaps = 18/275 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF +LG + ++ + RP+ IQA A P ++ G ++A +GSGKTL YLLPVI
Sbjct: 1 ESFADLGLEEALVAATDSMGLTRPTDIQASAIPKILSGGHFLVASHTGSGKTLTYLLPVI 60
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q+++ E + +++ PRV+I+ PT ELA QV S +++S F S ++ GG +
Sbjct: 61 QQMKDAERETGARAKPKRPRVLIVGPTRELAEQVRSVAKAVSH-HCKFSSELIIGGEKFA 119
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL-- 445
TQ + L +DV++ TPGR + +EG L L N+ ILDE D LF + F ++ L
Sbjct: 120 TQRQVLDRSLDVVVGTPGRIIKHCEEGNLFLSNVTHVILDEADTLF-EAGFGDEVRRLLR 178
Query: 446 -ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ +P Q + V+AT+ ++ + PD + + P +H+ +P L VDC G
Sbjct: 179 PLQKNPEGKQCIVVSATMAEKVAKMVSAELPDLQRIDTPSLHKSAPNLRHRFVDCPGS-- 236
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVS--KTIVFCN 537
++K + + Q++ S KT+VFCN
Sbjct: 237 ---------VDKMAIVEQIVSGDFRSGKKTMVFCN 262
>gi|30681173|ref|NP_849348.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
gi|108861892|sp|Q56X76.2|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
Length = 621
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 151/279 (54%), Gaps = 21/279 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVA 441
Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F+ F
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAP 290
Query: 442 L-QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
L Q + ++ Q + VTAT+ + + + E F + + +H+ + S
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
G + +K ALLQ++E S SK +VFCN
Sbjct: 351 GGE-----------DKLEALLQVLEPSLAKGSKVMVFCN 378
>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
Length = 620
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 150/279 (53%), Gaps = 21/279 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVA 441
Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F+ F
Sbjct: 231 PQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDITYLVLDEADTMFDRGFGPEIRKFLAP 290
Query: 442 L-QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
L Q + ++ Q + VTAT+ + + E F + + +H+ + S
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTTAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
G + +K ALLQ++E S SK +VFCN
Sbjct: 351 GGE-----------DKLEALLQVLEPSLAKGSKVMVFCN 378
>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
Length = 621
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 150/279 (53%), Gaps = 21/279 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q +R++E K+ PR V+L PT EL+ QV +S+S FRS++V+GG R +
Sbjct: 172 QLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHA-RFRSILVSGGSRIR 230
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVA 441
Q ++L +D++ TPGR + I+EG + ++ +LDE D +F+ F
Sbjct: 231 PQEDSLNNAIDMVAGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAP 290
Query: 442 L-QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
L Q + ++ Q + VTAT+ + + + E F + + +H+ + S
Sbjct: 291 LNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLS 350
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
G + +K ALLQ++E S SK +VFCN
Sbjct: 351 GGE-----------DKLEALLQVLEPSLAKGSKVMVFCN 378
>gi|88808729|ref|ZP_01124239.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
gi|88787717|gb|EAR18874.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. WH 7805]
Length = 429
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 115/197 (58%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++E+L+ + + PS IQA A P V++G+ + A Q+G+GKT + LPV++R
Sbjct: 21 FSDLGLGEPLLEALQDKGYTHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLER 80
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR + G G R ++L PT ELA+QVL N R+ S +P RS VV GG + Q
Sbjct: 81 LRHGKPAG-----RGQIRALVLTPTRELAAQVLENVRAYSSH-LPLRSDVVFGGVKANPQ 134
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ GVD+L+ATPGR + L ++G L L C +LDE D + D F ++ LI
Sbjct: 135 INRLRGGVDLLVATPGRLLDLHQQGALHFDQLECLVLDEADRML-DMGFIHDIRRLIRLM 193
Query: 450 PVTAQYLFVTATLPVEI 466
PV Q L +AT I
Sbjct: 194 PVKRQTLLFSATFSAPI 210
>gi|308804231|ref|XP_003079428.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116057883|emb|CAL54086.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 327
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 133/240 (55%), Gaps = 8/240 (3%)
Query: 269 SFKELGCSDY-MIESLKRQNFLRPSQIQAMAFPPV-VEGKSCILADQSGSGKTLAYLLPV 326
+F E G +D ++E+L+ P++IQ A + EG + +A +GSGKTLAYLLPV
Sbjct: 19 TFAEAGLADAALMEALRAMEITEPTEIQYKAIGVIGSEGGNAFIASHTGSGKTLAYLLPV 78
Query: 327 IQRLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
IQR++ E + G + P+VV+ PT ELA QV ++LS F S +V GG R
Sbjct: 79 IQRMKAAEAEAGERLAKPKRPKVVVTCPTRELAEQVAEVAKALSHVA-KFSSCLVVGGKR 137
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
TQ E L VDV+I TPGR + +++G L L ++ +LDE D LF + F ++ L
Sbjct: 138 LSTQKERLDSPVDVVIGTPGRLIKHVEQGNLFLGSVDAMVLDEADTLF-EAGFGDEVKRL 196
Query: 446 ---ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ + P + V+AT+P + + E P+ K + +HR +PGL+ +DC GD
Sbjct: 197 LRPLKARPEGKTCVLVSATMPDRLRKLVDEELPNLKYIKTDSLHRSAPGLKHRFIDCPGD 256
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++L + + P+ IQ A PPV+EG+ I Q+G+GKT A+ LP++ R
Sbjct: 12 FSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHR 71
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G K+ RV+IL+PT EL++Q+ + L + + RS VV GG + Q
Sbjct: 72 LAPGKPAGPKKA-----RVLILSPTRELSAQIAKTVKDLGRK-LSLRSAVVVGGVSIRPQ 125
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GVDVLIATPGR M LI++ + L + +LDE D + D F A++ +++ +
Sbjct: 126 IKTLASGVDVLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQML-DIGFMPAIKRILAMT 184
Query: 450 PVTAQYLFVTATLPVEI 466
P T Q L +AT+P EI
Sbjct: 185 PATRQTLLFSATMPKEI 201
>gi|145346658|ref|XP_001417802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578030|gb|ABO96095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 436
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 135/258 (52%), Gaps = 20/258 (7%)
Query: 287 NFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQ-GLSKSTSG 344
N + P++IQ A + G + +A +GSGKTLAYLLPVIQR++ E+ G +
Sbjct: 2 NIVEPTEIQTKAIDVIGRGAGNAFVASHTGSGKTLAYLLPVIQRMKAAEIAAGDRLAKPK 61
Query: 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATP 404
P+VV+ PT ELA QV ++LS F S +V GG R TQ E L +DV+I TP
Sbjct: 62 RPKVVVACPTRELAEQVAEVAKALSHVA-KFSSYLVVGGRRLGTQKERLDSAIDVVIGTP 120
Query: 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL---ISSSPVTAQYLFVTAT 461
GR + + +G L L ++ +LDE D LF + F ++ L + + P + V+AT
Sbjct: 121 GRLIKHVDQGNLFLGSVDAMVLDEADTLF-EAGFGDEVKRLLRPLKARPEGKTCVLVSAT 179
Query: 462 LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521
+P + + E P + + +HR +PGL+ VDC GD ++K + L
Sbjct: 180 MPDRLKKLVDEELPALQYIKTDSLHRSAPGLKHRFVDCPGD-----------VDKMTVLE 228
Query: 522 QLI--EKSPVSKTIVFCN 537
Q++ E K ++FCN
Sbjct: 229 QIVAPEHKQGKKLMIFCN 246
>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 479
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 140/270 (51%), Gaps = 18/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG + ++++L +Q F RP+ IQA A P ++EG+ I Q+G+GKT A+ LP++
Sbjct: 4 FRGLGLASSLLDTLAKQGFTRPTPIQAQAIPAILEGRDLIGIAQTGTGKTAAFALPILHA 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + G RV++L+PT ELASQ+ R+L + VV GG Q
Sbjct: 64 L----ITHPTPAPRGGARVLVLSPTRELASQIAETFRTLGQSHA-LSVAVVFGGVSPGAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQ G+D+L+ATPGR + I G+ L +LDEVD + D F ++ ++ +
Sbjct: 119 IKALQRGLDILVATPGRLVDHIDSGVAHLGKTEFFVLDEVDQML-DLGFVKPIRRIVGTL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI ++ D V ++P V + D+ +
Sbjct: 178 PAKRQSLFFSATMPGEIRKLATDLLKDPVTVS------VTP------VAKTADRVRQQVV 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L++L + +++TIVF K
Sbjct: 226 FVETHRKRDILIELFGDAMMTRTIVFTRTK 255
>gi|356499257|ref|XP_003518458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 636
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 154/281 (54%), Gaps = 27/281 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ +++ P++IQ++ P V+E KS +L +GSGKTLAYLLP+ Q
Sbjct: 130 SFEELGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQ 189
Query: 329 RLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ E+L G+ PR V+L PT EL+ QV +S+S FR +V+GG R +
Sbjct: 190 LLRRDEQLNGILLKPR-RPRAVVLCPTRELSEQVFRVAKSISHHA-RFRCTMVSGGGRLR 247
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +DV++ TPGR + I+EG + +++ +LDE D +F D F ++ I
Sbjct: 248 PQEDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFIG 306
Query: 447 -----SSSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVD 498
+S P + Q + VTAT+ + N + E F + +H +IS +F +
Sbjct: 307 PLKNRASKPDGLGFQTILVTATMTKAVQNLIDEEFLGIVHLRTSTLHKKISSARHDF-IK 365
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
+G + NK ALLQ++E S ++ +VFCN
Sbjct: 366 LAGSE-----------NKLEALLQVLEPSLAKGNRVMVFCN 395
>gi|330508037|ref|YP_004384465.1| ATP-dependent RNA helicase [Methanosaeta concilii GP6]
gi|328928845|gb|AEB68647.1| ATP-dependent RNA helicase, putative [Methanosaeta concilii GP6]
Length = 427
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 119/197 (60%), Gaps = 6/197 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L D ++ ++ + + P+ IQ +A PP++EGK + Q+G+GKT A++LP++Q
Sbjct: 2 SFGNLNIIDPLLRAIALEGYTTPTPIQMLAIPPLLEGKDLLGIAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ E S GSPRV++LAPT ELA+Q+ + + K + FR +V+ GG RQ
Sbjct: 62 RMSAER----RASRPGSPRVLVLAPTRELAAQIGQSFATYGKF-LRFRQLVIFGGVRQGP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVD+L+ATPGR + L+ +G ++L + +LDE+D + D F ++ ++S+
Sbjct: 117 QVNMLSRGVDILVATPGRLLDLMNQGYIELKGVEFFVLDEIDRML-DMGFIRDVKRIVSA 175
Query: 449 SPVTAQYLFVTATLPVE 465
P LF +ATL E
Sbjct: 176 LPEKHSSLFFSATLTRE 192
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 140/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL++ STS SP R +IL+PT ELA Q+ N + +K +P RS VV GG
Sbjct: 62 RLKK------FASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY-LPLRSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + + + +QL + +LDE D + D F ++
Sbjct: 115 MNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRML-DMGFINDIR 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ P T Q L +AT EI E D + V + + +E+ + +
Sbjct: 174 KILGMLPRTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQR 233
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L LI + + + IVFC K
Sbjct: 234 ------------KRYLLSHLIRERQMGQVIVFCKTK 257
>gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
Length = 635
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 145/278 (52%), Gaps = 21/278 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ +++ P++IQ + P V+EG+S +L +GSGKTLAY+LP++Q
Sbjct: 120 SFEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQ 179
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR++E PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 180 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRP 238
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVAL 442
Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F+ F L
Sbjct: 239 QEDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPL 298
Query: 443 QSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
++ S S Q + VTAT+ + + E F + +H+ + SG
Sbjct: 299 KNRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSG 358
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
+ NK ALLQ++E S +K +VFCN
Sbjct: 359 SE-----------NKLEALLQVLEPSLAKGNKVMVFCN 385
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 148/272 (54%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + ++ R F P+ +Q A P V+ G+ + A ++G+GKT A+ LP+I+
Sbjct: 4 TFEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVLAGRDVVAAAKTGTGKTAAFALPLIE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E +K GSPRV+++ PT ELA Q+ + C +++ G R + V GG K
Sbjct: 64 RLAGDE----AKRRPGSPRVLVVTPTRELAQQIDAACSDMTR-GSRVRVLSVVGGMPYKG 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +G+D+LIATPGR L++ G ++L + +LDE D + D F ++ ++++
Sbjct: 119 QIARLNKGIDILIATPGRLFDLMQRGDVKLDRVETLVLDEADRML-DMGFWPTMKKIVAA 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +AT+ ++ + + + D V + ++++++
Sbjct: 178 TPASRQTLLFSATIERKVMDSVSTILNDPAFVEIAHRGETADTVDQYVI----------- 226
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKK 539
P T KK ALL+ ++E + IVF +
Sbjct: 227 PVTQM--KKPALLRAVLEDKGADRVIVFVRTR 256
>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 601
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 150/280 (53%), Gaps = 25/280 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+EL SD ++ +++ P++IQ + P V++GKS +L +GSGKTLAY+LP++Q
Sbjct: 122 SFEELSLSDEVMGAVREMEIEVPTEIQCIGIPAVLDGKSVVLGSHTGSGKTLAYMLPLVQ 181
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR++E L GL PR ++L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LLRRDEALLGLLMKPR-RPRAIVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRMR 239
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +D+++ TPGR + I++G + +++ +LDE D +F D F ++ +
Sbjct: 240 PQEDSLNSPIDMIVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMF-DRGFGPDIRKFLG 298
Query: 447 -----SSSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
+S P + Q + VTAT+ + + E F + +H+ +
Sbjct: 299 PLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 358
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S ++ +VFCN
Sbjct: 359 SGSE-----------NKLEALLQVLEPSLAKGNRVMVFCN 387
>gi|358346247|ref|XP_003637181.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503116|gb|AES84319.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 684
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 153/281 (54%), Gaps = 27/281 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG D ++ +++ P++IQ + P V++GKS +L +GSGKTLAYLLP++Q
Sbjct: 110 SFEGLGLGDEVMGAVREMGIEVPTEIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQ 169
Query: 329 RLRQ-EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ E++ GL PR V+L PT EL+ QV +++S FR +V+GG R +
Sbjct: 170 LLRRDEQMNGLVLKPK-RPRAVVLCPTRELSEQVFRVAKAISHH-ARFRCTMVSGGGRLR 227
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q E+L +D+++ TPGR + I+EG + +++ +LDE D +F D F ++ +
Sbjct: 228 PQEESLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMF-DRGFGPDIKKFLA 286
Query: 447 -----SSSP--VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVD 498
+S P + Q + VTAT+ + N + E F + +H +IS +F +
Sbjct: 287 PLKHRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSSLHKKISNARHDF-IK 345
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK +LLQ++E S ++ +VFCN
Sbjct: 346 LSGTE-----------NKLDSLLQVLEPSLAKGNRVMVFCN 375
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 140/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT A++LP+++
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILE 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL++ STS SP R +IL+PT ELA Q+ N + +K +P RS VV GG
Sbjct: 62 RLKK------FASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY-LPLRSTVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + + + +QL + +LDE D + D F ++
Sbjct: 115 MNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRML-DMGFINDIR 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ P T Q L +AT EI E D + V + + +E+ + +
Sbjct: 174 KILGMLPRTRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQR 233
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L LI + + + IVFC K
Sbjct: 234 ------------KRYLLSHLIRERQMGQVIVFCKTK 257
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 133/240 (55%), Gaps = 18/240 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG SD +++++ +Q + +PS IQ A PPV+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 TFKQLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q E S R +IL PT ELA+QV N R S+ RS+V+ GG QK
Sbjct: 62 ILSQTE-----TSRQRPIRALILTPTRELAAQVHENVRQYSEF-TDLRSLVIFGGVNQKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVL+ATPGR + L +G + L + +LDE D + D F ++ +++
Sbjct: 116 QVAALNRGVDVLVATPGRLLDLQNQGAICLRKIEILVLDEADRML-DMGFLRDIERIMAL 174
Query: 449 SPVTAQYLFVTAT-------LPVEIYNK--LVEVFPDCKVV--MGPGMHRISPGLEEFLV 497
P Q L +AT L I NK LVE P+ V + ++R++ G + L+
Sbjct: 175 MPAKRQNLLFSATFSKDIKRLASGILNKPVLVEATPENSTVDAITQKVYRVAKGKKTGLI 234
>gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 27/280 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ ++ +++ PS+IQ + P V+EGKS IL +GSGKTLAYLLP++Q
Sbjct: 122 FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181
Query: 330 LRQ-EELQG-LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ EEL G L K PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LRRDEELFGRLMKPR--RPRAVVLCPTRELSEQVFRVSKSISHHA-RFRSTMVSGGGRLR 238
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +D+++ TPGR + I+ G + +++ +LDE D +F D F ++ I
Sbjct: 239 PQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMF-DHGFGPDIRKFIG 297
Query: 447 -------SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
S Q + VTAT+ + + E F + +H+ +
Sbjct: 298 PLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 357
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S ++ +VFCN
Sbjct: 358 SGSE-----------NKLEALLQVLEPSLAKGNRVMVFCN 386
>gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 27/280 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ ++ +++ PS+IQ + P V+EGKS IL +GSGKTLAYLLP++Q
Sbjct: 122 FEELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQL 181
Query: 330 LRQ-EELQG-LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR+ EEL G L K PR V+L PT EL+ QV +S+S FRS +V+GG R +
Sbjct: 182 LRRDEELFGRLMKPR--RPRAVVLCPTRELSEQVFRVSKSISHHA-RFRSTMVSGGGRLR 238
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI- 446
Q ++L +D+++ TPGR + I+ G + +++ +LDE D +F D F ++ I
Sbjct: 239 PQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMF-DHGFGPDIRKFIG 297
Query: 447 -------SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
S Q + VTAT+ + + E F + +H+ +
Sbjct: 298 PLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKL 357
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S ++ +VFCN
Sbjct: 358 SGSE-----------NKLEALLQVLEPSLAKGNRVMVFCN 386
>gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like
[Brachypodium distachyon]
Length = 625
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 147/280 (52%), Gaps = 25/280 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG + ++ +++ +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q
Sbjct: 92 SFEELGLEEEVMAAMREAGISKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQ 151
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR +E G+S PR V+L PT EL QV +S+S FRS +V+GG R +
Sbjct: 152 LLRHDEATLGMSLKPR-RPRAVVLCPTRELTEQVFRVAKSISHHA-RFRSTMVSGGTRLR 209
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQS 444
Q ++L VD+++ TPGR + IKEG + +++ +LDE D +F+ ED L
Sbjct: 210 PQEDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAP 269
Query: 445 LISSSPVTA----QYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDC 499
L + + Q + V+AT+ + + E F + RI+ +F +
Sbjct: 270 LKNRASKPGDQGFQTVLVSATMTKAVQKLIDEEFEGIVHLRTSTFQKRIATARHDF-IKL 328
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S +K +VFCN
Sbjct: 329 SGSE-----------NKLEALLQVLEPSLAKGNKVMVFCN 357
>gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays]
gi|194689078|gb|ACF78623.1| unknown [Zea mays]
gi|224029523|gb|ACN33837.1| unknown [Zea mays]
gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 613
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 150/282 (53%), Gaps = 27/282 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 95 ESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 154
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 155 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 212
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ +
Sbjct: 213 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFL 271
Query: 447 SSSPVTA--------QYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLV 497
+ A Q + VTAT+ + + E F + R+S +F +
Sbjct: 272 APLKNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDF-I 330
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S +K +VFCN
Sbjct: 331 KLSGAE-----------NKLEALLQVLEPSLAKGNKVMVFCN 361
>gi|365897083|ref|ZP_09435116.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
gi|365422196|emb|CCE07658.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3843]
Length = 503
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 142/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N+ P+ IQA P +EG+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADALQRALKDENYQTPTPIQAQTIPLALEGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL LQ +K + RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RL----LQNRTKPQPKTARVLVLSPTRELSGQILDSFHAYGRH-IRLSSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+VL+ATPGR + LI+ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRTIMPGVEVLVATPGRLLDLIQGNALKLTSVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +I + D +V + P V + ++ S +
Sbjct: 177 LPHKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTAERISQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L QL+++ PV + +VF K
Sbjct: 224 AIQVDHTAKSAMLTQLLKEEPVDRALVFTRTK 255
>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
Length = 612
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 150/282 (53%), Gaps = 27/282 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 94 ESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 153
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 154 QLLRRDEAMLGISMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 211
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ +
Sbjct: 212 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFL 270
Query: 447 SSSPVTA--------QYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLV 497
+ A Q + VTAT+ + + E F + R+S +F +
Sbjct: 271 APLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDF-I 329
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S +K +VFCN
Sbjct: 330 KLSGAE-----------NKLEALLQVLEPSLAKGNKVMVFCN 360
>gi|381188403|ref|ZP_09895965.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379650191|gb|EIA08764.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 428
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 118/199 (59%), Gaps = 9/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD +++++ ++ + PS IQ A PP++EGK + + Q+G+GKT + LP++Q
Sbjct: 2 SFNSLGLSDALLKAISKKGYTTPSPIQQKAIPPILEGKDVLASAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K S P R +IL PT ELA+Q+L+N + S+ + RS V+ GG QK
Sbjct: 62 ILAE------GKHLSHRPIRALILTPTRELAAQILANIKEYSEF-LDLRSTVIFGGVNQK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++G+D+L+ATPGR + L +G++ L + +LDE D + D F ++ ++
Sbjct: 115 PQVAQLRQGIDILVATPGRLIDLQNQGLITLSKVEILVLDEADRML-DMGFLRDIERIMK 173
Query: 448 SSPVTAQYLFVTATLPVEI 466
PV Q L +AT +I
Sbjct: 174 VLPVKRQNLMFSATFSKDI 192
>gi|257790938|ref|YP_003181544.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257474835|gb|ACV55155.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 414
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 147/273 (53%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + +++R F P+ +Q A P V+EG+ + A +G+GKT A+ LP+ +
Sbjct: 4 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ G +K GSPR ++++PT EL Q+ + C L+K R + V GG + K
Sbjct: 64 RI------GRAKR-PGSPRALVVSPTRELTQQIDAACTQLAKAS-NRRMLTVMGGTKYKG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G+DVL+ATPGR L++ G+++L ++ +LDE D + D F ++ ++++
Sbjct: 116 QIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRML-DMGFWPTMKKVVAA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +ATL ++ + + D V + +++F++
Sbjct: 175 TPSSRQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGP------- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSK-TIVFCNKKS 540
KK ALL+L+ + SK IVF + K+
Sbjct: 228 ------MKKPALLRLVLQQRGSKRVIVFADTKT 254
>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 443
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 147/273 (53%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + +++R F P+ +Q A P V+EG+ + A +G+GKT A+ LP+ +
Sbjct: 33 TFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPLFE 92
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ G +K GSPR ++++PT ELA Q+ + C L+K R + V GG + K
Sbjct: 93 RI------GRAKR-PGSPRALVVSPTRELAQQIDAACTQLAKAS-NRRMLTVMGGTKYKG 144
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G+DVL+ATPGR L++ G+++L ++ +LDE D + D F ++ ++++
Sbjct: 145 QIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVLDEADRML-DMGFWPTMKKVVAA 203
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +ATL ++ + + D V + +++F++
Sbjct: 204 TPSSRQTLLFSATLDRKVMQSVSSILKDPAFVEVSHKGETADTIDQFMIPVGP------- 256
Query: 509 PETAFLNKKSALLQLIEKSPVSK-TIVFCNKKS 540
KK LL+L+ + SK IVF + K+
Sbjct: 257 ------MKKPELLRLVLQQRGSKRVIVFTDTKT 283
>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
Length = 618
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 150/282 (53%), Gaps = 27/282 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 108 ESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 167
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 168 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVFRVAKSISHHA-RFRSTMVSGGSRI 225
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ +
Sbjct: 226 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFL 284
Query: 447 SSSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLV 497
+ A Q + VTAT+ + + E F + R++ +F +
Sbjct: 285 APLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDF-I 343
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S +K +VFCN
Sbjct: 344 KLSGSE-----------NKLEALLQVLEPSLAKGNKVMVFCN 374
>gi|442320812|ref|YP_007360833.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
gi|441488454|gb|AGC45149.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
Length = 497
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 140/271 (51%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++ ++K + + P+ IQA A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLHDTLLRAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K +P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGESFMTYGK-NLPLRHAVIFGGVGQGA 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++LQ GVDVL+ATPGR + L+ +G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQSLQRGVDVLVATPGRLLDLMDQGYVSLRSLEVFVLDEADRML-DMGFIHDVRKVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI + + D P ++P V + + + +
Sbjct: 176 LPSKRQTLFFSATMPPEIVDLSRNLLTD------PVRVEVTP------VSSTAETVAQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L L++ +S+ +VF K
Sbjct: 224 FFVEREQKRGLLTHLLKDGKISRALVFTRTK 254
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 141/271 (52%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++ ++K + + P+ IQ A P + G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + ++ K G+P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGDSFQTYGK-GLPLRHAVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L+++G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQALRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRML-DMGFIHDVRRVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP +I + + D P +SP + + S +
Sbjct: 176 LPPKRQTLFFSATLPPDIVDLARSILTD------PIRVEVSP------ASSTAETVSQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L L+++ +S+ +VF K
Sbjct: 224 YFVEREQKRGLLTHLLKEGNISRALVFTRTK 254
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 143/279 (51%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI D + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E DKT A++QLI + + + IVFCN K
Sbjct: 241 ---EGDKT---------GAVVQLIRERSLKQVIVFCNSK 267
>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
Length = 625
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 149/281 (53%), Gaps = 27/281 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q
Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 170
Query: 329 RLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R +
Sbjct: 171 LLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVFRVAKSISHHA-RFRSTMVSGGSRIR 228
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ ++
Sbjct: 229 PQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFLA 287
Query: 448 SSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVD 498
A Q + VTAT+ + + E F + R++ +F +
Sbjct: 288 PLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDF-IK 346
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
SG + NK ALLQ++E S +K +VFCN
Sbjct: 347 LSGSE-----------NKLEALLQVLEPSLAKGNKVMVFCN 376
>gi|317488296|ref|ZP_07946860.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316912603|gb|EFV34148.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 516
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 9/233 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F ELG SD +E++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP +
Sbjct: 12 KQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSL 71
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL G +K G P ++++ PT ELA Q+ C +++ R + V GG
Sbjct: 72 DRL------GHAKGGQG-PLMLVVTPTRELAQQIGEVCTAIA-ASTHHRILTVVGGLSYT 123
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+LIATPGR + L+++G ++L ++ +LDE D + D F A++ +I
Sbjct: 124 PQINKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRML-DMGFWPAMKKIIG 182
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++P + Q L +AT+ I N + ++ D V + +E+++V +
Sbjct: 183 ATPASRQTLLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVA 235
>gi|195998355|ref|XP_002109046.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
gi|190589822|gb|EDV29844.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
Length = 512
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 145/282 (51%), Gaps = 27/282 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF L D +I+SL N P+ IQ++A P + GK+ + A ++GSGKT+AYL P+I
Sbjct: 105 SFSRLFLRDDVIDSLANINITTPTAIQSLAIPKIAAGKNVLCASETGSGKTIAYLAPLIH 164
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQK 387
R+++EE + + PR I+ P+ ELA Q L +SL C V +R + V GG +QK
Sbjct: 165 RIKEEEEKCGLITRLNRPRACIVVPSRELAQQTLKVAKSL--CHVSKYRVVGVIGGKKQK 222
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL-- 445
+ L+ DV++ATPG + + + +L +LDE D LF++ +E +L+ L
Sbjct: 223 LLEKALETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTLFDESFYERSLEILEK 282
Query: 446 ----------ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495
+ + AQ V ATLP + L V P+ K V G H++ P ++
Sbjct: 283 IKIRGGKPMSLDTLQKDAQVTVVGATLPKRVEAILNPVIPNLKKVTTKGFHKLLPHIQ-- 340
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
Q+ K +T+ K LL+L+++ TI+FCN
Sbjct: 341 -------QDILKLKQTS---KAGTLLKLLKERRHGSTIIFCN 372
>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
Length = 506
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 151/276 (54%), Gaps = 27/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNQQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + L+ + + L ++ +LDE D + D F ++ +I+
Sbjct: 117 TQERALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRML-DMGFIHDVKRIIA 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI +LV+ + P I+P V + +++
Sbjct: 176 KMPSKKQTLFFSATMPAEI-TQLVQTL-----LHNPVKVEITP------VSST----AER 219
Query: 508 TPETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
++ +L NK+ L +L++ S + +VF K
Sbjct: 220 IEQSVYLLETGNKQQQLNELMKDSSIVSALVFTRTK 255
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 113/198 (57%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + PS IQ A P V++GK + + Q+G+GKT + LP+I
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG K R ++L PT ELA+Q+ N SK V +SMV+ GG Q
Sbjct: 62 RLINNPKQGRRK-----IRALVLTPTRELAAQIQENVLEYSKY-VDIKSMVIFGGVNQNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L +G+L L ++ +LDE D + D F ++ ++
Sbjct: 116 QVRTLRQGVDILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRML-DMGFIHDIKKVLKM 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 VPAKRQNLLFSATFNTDI 192
>gi|148239434|ref|YP_001224821.1| putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
gi|147847973|emb|CAK23524.1| Putative ATP-dependent RNA helicase [Synechococcus sp. WH 7803]
Length = 399
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 112/187 (59%), Gaps = 7/187 (3%)
Query: 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339
+E+L+ + + PS IQA A P V++G+ + A Q+G+GKT + LPV++RLR + G +
Sbjct: 1 MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRA 60
Query: 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDV 399
+ R ++L PT ELA+QVL N ++ S+ +P RS VV GG + Q++ L+ GVD+
Sbjct: 61 QI-----RALVLTPTRELAAQVLENVKAYSRH-LPLRSDVVFGGVKANPQIDRLRGGVDL 114
Query: 400 LIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459
L+ATPGR + L ++G L+ L C +LDE D + D F ++ LI P Q L +
Sbjct: 115 LVATPGRLLDLHQQGALRFDQLECLVLDEADRML-DMGFIHDIRRLIRLMPAKRQTLLFS 173
Query: 460 ATLPVEI 466
AT I
Sbjct: 174 ATFSAPI 180
>gi|257790993|ref|YP_003181599.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|325830863|ref|ZP_08164247.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|257474890|gb|ACV55210.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
gi|325487270|gb|EGC89713.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 506
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 9/233 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F ELG SD +E++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP +
Sbjct: 2 KQFNELGLSDQALEAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL G +K G P ++++ PT ELA Q+ C +++ R + V GG
Sbjct: 62 DRL------GHAKGGQG-PLMLVVTPTRELAQQIGEVCTAIA-ASTHHRILTVVGGLSYT 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+LIATPGR + L+++G ++L ++ +LDE D + D F A++ +I
Sbjct: 114 PQINKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRML-DMGFWPAMKKIIG 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++P + Q L +AT+ I N + ++ D V + +E+++V +
Sbjct: 173 ATPASRQTLLFSATIDASIKNSVGKLLHDPAFVEIAHKGETADTVEQYIVHVA 225
>gi|4538903|emb|CAB39640.1| putative protein [Arabidopsis thaliana]
gi|7267668|emb|CAB78096.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 145/277 (52%), Gaps = 24/277 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+ELG S+ ++ +L+ N P++IQ + P V+E KS +L +GSGKTLAYLLP++
Sbjct: 112 ENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIV 171
Query: 328 QRL----RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
Q L R++E K+ PR V+L PT EL+ QV C FRS++V+GG
Sbjct: 172 QVLSELMREDEANLGKKTKPRRPRTVVLCPTRELSEQV---CLHQDYHHARFRSILVSGG 228
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
R + Q ++L +D+++ TPGR + I+EG + ++ +LDE D +F D F ++
Sbjct: 229 SRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMF-DRGFGPEIR 287
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLV-EVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ +P+ V + + KLV E F + + +H+ + SG
Sbjct: 288 KFL--APLNQHIKVVNEIVSFQAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 345
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
+ +K ALLQ++E S SK +VFCN
Sbjct: 346 E-----------DKLEALLQVLEPSLAKGSKVMVFCN 371
>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 506
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 120/199 (60%), Gaps = 7/199 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 18 TFQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 77
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ + G+++ R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 78 LLNEQPPKPGMARRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 132
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + L+ + + L ++ +LDE D + D F ++ +IS
Sbjct: 133 TQERALQQGADILIATPGRLLDLMNQKRIDLQHVEILVLDEADRML-DMGFIHDVKRIIS 191
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 192 KMPSKKQTLFFSATMPAEI 210
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV+VLIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 263 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 289
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G S ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------TANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML-DMGFLPDLQ 189
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + +
Sbjct: 190 RILNLLPKECQTLLFSATFSAEIKKLASTYLRNPQTIEVARSNSTNANVRQIVYEV---H 246
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
ESDK+ A+ QLI + + + IVFCN K
Sbjct: 247 ESDKS---------GAVAQLIRERKLKQVIVFCNSK 273
>gi|316933048|ref|YP_004108030.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris DX-1]
gi|315600762|gb|ADU43297.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
DX-1]
Length = 473
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 145/272 (53%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N+L P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL LQ K TS + RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 69 RL----LQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRH-IHLTATLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GVDVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 183 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VSSTVERINQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L QL++ V++ +VF K
Sbjct: 230 VIQLDHSAKPAVLAQLLKDEKVNQALVFTRTK 261
>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 445
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 142/272 (52%), Gaps = 21/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S+ + ++ + + P+ +Q A P +EG+ + A +G+GKT A+ LPVI+
Sbjct: 36 TFQDLGLSETTLAAVAQMGYNAPTPVQEQAIPLALEGRDVVAAAVTGTGKTTAFALPVIE 95
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + + GSPR ++++PT ELA Q+ + C L+K G R + V GG K
Sbjct: 96 RIDRAK-------KPGSPRALVVSPTRELALQIDAACTQLAK-GSGLRVVTVVGGVPYKG 147
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L GVD+L+ATPGR L++ G ++L ++ +LDE D + D F ++ ++++
Sbjct: 148 QLSKLSRGVDILVATPGRLHDLMERGDVKLRDVEILVLDEADRML-DMGFWPTMKKIVAA 206
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P + Q L +ATL ++ + + D V S +E+F+V
Sbjct: 207 TPSSRQTLLFSATLDRKVMQSVSAILRDPAFVEVAHKGETSDTIEQFIVPVGS------- 259
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K S L L+ + + IVF + K+
Sbjct: 260 -----MQKASLLRLLLAERGSKRVIVFTDTKT 286
>gi|383455776|ref|YP_005369765.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
gi|380732540|gb|AFE08542.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
Length = 484
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 6/200 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL +D +++++K + + P+ IQA A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLTDSLLKAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELASQV + + K +P R VV GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELASQVSDSFATYGK-NLPLRHAVVFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + LI +G + L L +LDE D + D F ++ +I
Sbjct: 117 QVQALRQGVDILVATPGRLLDLIDQGFVTLRALEVFVLDEADRML-DMGFIHDVRRVIKV 175
Query: 449 SPVTAQYLFVTATLPVEIYN 468
P Q LF +ATLP +I +
Sbjct: 176 LPPVRQTLFFSATLPPDIMD 195
>gi|85713494|ref|ZP_01044484.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
gi|85699398|gb|EAQ37265.1| DEAD/DEAH box helicase [Nitrobacter sp. Nb-311A]
Length = 479
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 144/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N+L P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDIVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ KS RV++L+PT EL+ Q+L N + + + S + GG
Sbjct: 69 RLLQNRIKPQPKSC----RVLVLSPTRELSGQILDNFNAYGRH-LRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ GVDV++ATPGR + L++ L+L + +LDE D + D F ++ +I+
Sbjct: 124 QVRSVMHGVDVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRML-DMGFIHDIRKVIAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
PV Q L +AT+P +I ++ D +V + P V + D+ + +
Sbjct: 183 LPVKRQTLLFSATMPKDIAELANQMLRDPARVAVTP-------------VASTVDRIAQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ +K + L QL+++ PV++ ++F K
Sbjct: 230 IIQVDHASKPAHLAQLLKQEPVNRALIFTRTK 261
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 NFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + + IVFCN K
Sbjct: 263 EGD---------KQAAVVQLLRERGLKQVIVFCNSK 289
>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
Length = 432
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 143/271 (52%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L S ++++L+ + + PS IQ A P V+ GK + Q+G+GKT A+ LP+IQ
Sbjct: 2 TFKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + SK R +IL PT ELA Q+ N + P R V+ GG
Sbjct: 62 NLMRPSDKKHSKRVI---RSLILTPTRELALQIAENFKEYG-SHTPVRCAVIFGGVSAVP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ G+D+L+ATPGR LI +G + L ++ +LDE D + D F ++ +IS
Sbjct: 118 QIKELQRGIDILVATPGRLNDLIHQGEISLSHVEMFVLDEADRML-DMGFIHDVKKIISL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q L +AT+P EI L E K++ P + ++P +VD D
Sbjct: 177 LPVKKQTLLFSATMPPEI-QALTE-----KLLHNPAVVEVTP--VSSIVDLIEDSLYYVD 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E NK++ L+ L+++ ++ T+VF K
Sbjct: 229 KE----NKRALLVHLLKREAITSTLVFTRTK 255
>gi|379725028|ref|YP_005317159.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386727777|ref|YP_006194103.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|378573700|gb|AFC34010.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384094902|gb|AFH66338.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 422
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 119/198 (60%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +I++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFQQLQLIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ C R V+ GG Q+
Sbjct: 62 LLSTQQGRPNGKRVI---RSLILTPTRELAIQISDNAKAYG-CFTNLRYGVIVGGVSQRP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++G+D+LIATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 118 QEQLLEQGMDILIATPGRLIDLMNQGFVDLSHVQILVLDEADRML-DMGFIHDMKRIIAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
PV Q LF +AT+P EI
Sbjct: 177 LPVKRQTLFFSATMPPEI 194
>gi|337752121|ref|YP_004646283.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336303310|gb|AEI46413.1| DEAD/DEAH box helicase domain protein [Paenibacillus mucilaginosus
KNP414]
Length = 422
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 119/198 (60%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +I++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFQQLELIPPIIKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ C R V+ GG Q+
Sbjct: 62 LLSTQQGRPNGKRVI---RSLILTPTRELAIQISDNAKAYG-CFTNLRYGVIVGGVSQRP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++G+D+LIATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 118 QEQLLEQGMDILIATPGRLIDLMNQGFVDLSHVQILVLDEADRML-DMGFIHDMKRIIAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
PV Q LF +AT+P EI
Sbjct: 177 LPVKRQTLFFSATMPPEI 194
>gi|336172862|ref|YP_004580000.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334727434|gb|AEH01572.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 444
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 136/240 (56%), Gaps = 18/240 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK+LG S+ +++++ ++ + PS IQA A PPV++G + + Q+G+GKT + LP++
Sbjct: 2 SFKQLGLSEPLLKAISKKGYENPSPIQAKAIPPVLDGYDVLASAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K R ++L PT ELA+QV +N + S+ + RS+V+ GG QK
Sbjct: 62 ILSEN-----PKEKFRPIRALVLTPTRELAAQVYANVKEYSEF-LNLRSVVIFGGVNQKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ N+++GVDVL+ATPGR + L +G+L L + +LDE D + D F ++ ++
Sbjct: 116 QVANIRKGVDVLVATPGRLIDLNNQGLLSLKRVEIFVLDEADRML-DMGFLRDIERVMKL 174
Query: 449 SPVTAQYLFVTATLPVEI----YNKL-----VEVFPDCKVV--MGPGMHRISPGLEEFLV 497
P Q L +AT +I +N L VE P+ V + ++R++ GL+ LV
Sbjct: 175 MPDKRQNLMFSATFSKDIKKLAFNILKNPVQVEATPENTAVEAISQKVYRVAKGLKTGLV 234
>gi|238023960|ref|YP_002908192.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
gi|237878625|gb|ACR30957.1| DEAD/DEAH box helicase [Burkholderia glumae BGR1]
Length = 461
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 113/198 (57%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLRELNYAEPTPVQARAIPAVLGGKDVLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG + S S RV++L PT ELA QVL + CG+ R + GG
Sbjct: 62 RLVQ---QGPAVS-SNRARVLVLVPTRELAEQVLQSFADYG-CGLELRMLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q +R +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVRTLVLDEADRML-DLGFARELDAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT P EI
Sbjct: 176 LPTRRQTLLFSATFPDEI 193
>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 506
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 8/207 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L Q+ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNQQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + L+ + + L ++ +LDE D + D F ++ +I+
Sbjct: 117 TQERALQQGADILIATPGRLLDLMNQKHVDLQHVEILVLDEADRML-DMGFIHDVKRIIA 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF 474
P Q LF +AT+P EI +LV+
Sbjct: 176 KMPSKKQTLFFSATMPAEI-TQLVQTL 201
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 143/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G S ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL S +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------SANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML-DMGFLPDLQ 189
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + +
Sbjct: 190 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVRQIVYEV---H 246
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
ESDK+ A+ QLI + + + IVFCN K
Sbjct: 247 ESDKS---------GAVAQLIRERELKQVIVFCNSK 273
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 138/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + PS IQ A P V+EGK + + Q+G+GKT + LP++
Sbjct: 2 SFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L QG K R ++L PT ELA+Q+ N R SK V +S V+ GG Q
Sbjct: 62 NLIANPRQGRRKV-----RALVLTPTRELAAQIYDNVREYSKY-VDIKSTVIFGGVNQNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++GVD+L+ATPGR + L +G+L L ++ +LDE D + D F ++ ++
Sbjct: 116 QVRTIRQGVDILVATPGRLLDLENQGLLSLSDIEFLVLDEADRML-DMGFIHDIKKVLRL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +NK ++ ++ P + +P + + ++ KT
Sbjct: 175 VPAKRQNLLFSAT-----FNKDIKKLASS-ILTNPVLVEATPE------NTTAEKVDQKT 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K L++ I + + +VF K
Sbjct: 223 YRVDKSRKTEMLIKFINEGNWDQVLVFTRTK 253
>gi|148258225|ref|YP_001242810.1| ATP-dependent RNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410398|gb|ABQ38904.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. BTAi1]
Length = 469
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 141/272 (51%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRALMPGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERITQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K S L QL++ PV++ +VF K
Sbjct: 224 VIQVDHSAKPSLLAQLLKDEPVNRALVFTRTK 255
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N ++ +K RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + + +
Sbjct: 184 RILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E DKT A++QLI + + + IVFCN K
Sbjct: 241 EGDKT---------GAVVQLIRERSLKQVIVFCNSK 267
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI D + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A+++LI + + IVFCN K
Sbjct: 241 EGD---------KQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 263 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 289
>gi|27376558|ref|NP_768087.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
gi|27349699|dbj|BAC46712.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
110]
Length = 530
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 146/272 (53%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQDFGLAEPIARALSEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+T RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RLLEHRIKPQPKTT----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 132 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 191 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTAERINQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ F K + L +L++ P+++ +VF K
Sbjct: 238 ILQVDFSAKPAFLTKLLKDEPINRALVFTRTK 269
>gi|39936732|ref|NP_949008.1| ATP-dependent RNA helicase [Rhodopseudomonas palustris CGA009]
gi|192292558|ref|YP_001993163.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris TIE-1]
gi|39650588|emb|CAE29111.1| putative ATP-dependent RNA helicase [Rhodopseudomonas palustris
CGA009]
gi|192286307|gb|ACF02688.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
TIE-1]
Length = 474
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 145/272 (53%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+E G +D + +L+ +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 10 SFQEFGLADPIARALQEENYHTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ SK+ RV++L+PT EL+ Q+L + + + V + + GG
Sbjct: 70 RLLQNRIKPASKTC----RVLVLSPTRELSGQILDSFNAYGRH-VHLSAALAIGGVPMGR 124
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GVDVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 125 QVRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRML-DMGFINDIRKIVAK 183
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 184 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VSSTVERINQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K +AL Q+++ V++ +VF K
Sbjct: 231 VIQLDHSAKPAALAQILKDDKVNQALVFTRTK 262
>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 438
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 111/199 (55%), Gaps = 9/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD +++++ + + +PS IQ A P ++EGK + + Q+G+GKT + LPV+Q
Sbjct: 2 SFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K P R ++L PT ELA+QV N R SK V +S VV GG +
Sbjct: 62 YLSE------TKHPKYRPIRALVLTPTRELAAQVHDNVREYSKY-VNIKSAVVFGGVKAA 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q+ L+ GVD+L+ATPGR + L + + + ILDE D + D F + +IS
Sbjct: 115 SQIATLKRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRML-DMGFVRDINKIIS 173
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 YMPAKRQNLMFSATFSKEI 192
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 267
>gi|75674512|ref|YP_316933.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
gi|74419382|gb|ABA03581.1| DEAD/DEAH box helicase [Nitrobacter winogradskyi Nb-255]
Length = 476
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 142/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N+L P+ IQA P + G+ + Q+G+GKT A+ LP++
Sbjct: 9 SFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTAAFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ KS RV++L+PT EL+ Q+L N + + + S + GG
Sbjct: 69 RLLQNRIKPQPKSC----RVLVLSPTRELSGQILENFNAYGRH-LRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+V++ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRAVMHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRML-DMGFIHDIRKVVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +I ++ D +V + P V + D+ + +
Sbjct: 183 LPAKRQTLFFSATMPKDIAELANQMLRDPARVAVTP-------------VSSTVDRITQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L QL+++ PV++ ++F K
Sbjct: 230 IIQVDHAGKAAFLAQLLKQEPVNRALIFTRTK 261
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 146 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 257
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 258 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 314
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 315 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 341
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 267
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 267
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 267
>gi|255553981|ref|XP_002518031.1| hypothetical protein RCOM_1176990 [Ricinus communis]
gi|223543013|gb|EEF44549.1| hypothetical protein RCOM_1176990 [Ricinus communis]
Length = 105
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 73/93 (78%)
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+++SPV QYLFVTAT+PV +YNKL+E FPDC VVMGPGMH L+EF+VDCS + +
Sbjct: 1 MNASPVRTQYLFVTATIPVGVYNKLIENFPDCPVVMGPGMHGTRATLQEFIVDCSLEIGA 60
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
D+TPET FLN K ALLQ++E+ PV K I FCNK
Sbjct: 61 DRTPETTFLNTKFALLQVVEQRPVLKLIAFCNK 93
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 89 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 148
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 149 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 201
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 202 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 260
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 261 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 308
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 309 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 344
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 267
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++++++ + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 18 TFDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL S +TS SP R ++L PT ELA QV +N ++ SK P RS VV GG
Sbjct: 78 RLLP------SANTSASPARHPVRALMLTPTRELADQVAANVQTYSKH-TPLRSTVVFGG 130
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L+ GV++LIATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 131 VDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML-DMGFLPDLQ 189
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + +
Sbjct: 190 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVRQIVFEV---H 246
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
ESDK+ A+ QLI + + + IVFCN K
Sbjct: 247 ESDKS---------GAVAQLIRERELKQVIVFCNSK 273
>gi|323137351|ref|ZP_08072429.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322397338|gb|EFX99861.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 450
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 143/274 (52%), Gaps = 26/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +L R+ + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FSDLGLAEILLRALDREGYETPTSIQAQAIPYLMEGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + R ++LAPT ELA+Q+ + R+ + P ++V GG + Q
Sbjct: 64 LAADR----RRPAPFTARTLVLAPTRELAAQIADSFRAYGQFMRPSVGVIV-GGVSHRPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L G+DVL+ATPGR + I G L+L +LDE D + D F V ++ +++
Sbjct: 119 IDMLARGLDVLVATPGRLLDHIASGKLKLAATEVLVLDEADHML-DLGFIVPIRQIVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P EI ++ + +V + P R++ + FLVD
Sbjct: 178 PKKRQTLLFSATMPKEIAGLAEDMLQNPAQVSVTPVATTAERVAQHV--FLVDGGA---- 231
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L++L+ + VS+ IVF K
Sbjct: 232 ----------KRDMLIELMNDADVSRAIVFTRTK 255
>gi|410671946|ref|YP_006924317.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
gi|409171074|gb|AFV24949.1| DEAD/DEAH box helicase-like protein [Methanolobus psychrophilus
R15]
Length = 408
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 149/279 (53%), Gaps = 36/279 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L D + +L ++ ++ P+ IQ + P +++GK I Q+G+GKT A++LP++QR
Sbjct: 3 FKDLNLIDPLQRALTKEGYIEPTPIQVQSIPQLLKGKDLIGIAQTGTGKTAAFVLPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +T G PRV++LAPT ELA+Q+ + + + F+ VV GG Q Q
Sbjct: 63 MHEKH----KHTTPGFPRVLVLAPTRELAAQIGDSFAAYGHF-LHFKHTVVFGGVSQVPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+++ +GVD+L+ATPGR + L+ +GI++L + +LDE D + D F + ++S
Sbjct: 118 FKSITKGVDILVATPGRLLDLMDQGIVKLSGVEFFVLDEADRML-DMGFIKDVNRIVSML 176
Query: 450 PVTAQYLFVTATLP---VEIYNKL------VEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
P Q LF +AT+ E+ +L VEV P V RI + F V
Sbjct: 177 PHKRQSLFFSATMSPQISELTRRLLTDPVRVEVTPQATTV-----ERIEQKV--FFV--- 226
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DQE NK + LL L+++ ++ +VF K
Sbjct: 227 -DQE----------NKDALLLSLLQQDHLNCVLVFTRTK 254
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV+VLIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A+++LI + + IVFCN K
Sbjct: 241 EGD---------KQAAVVKLIRDRALKQVIVFCNSK 267
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI D + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNAAASTVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A+++LI + + IVFCN K
Sbjct: 241 EGD---------KQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|354584019|ref|ZP_09002916.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353197281|gb|EHB62774.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 490
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 119/199 (59%), Gaps = 7/199 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++++L ++N+ P+ IQA A P V+ G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFQDLNISPIILKALAKENYKTPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQ 61
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ + G+ + R ++L+PT ELA Q+ N ++ S+ RS + GG QK
Sbjct: 62 LLNEQPPKPGMGRRI----RALVLSPTRELALQISDNVKAYSQF-TKLRSTAIVGGVSQK 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ LQ+G D+LIATPGR + LI + + L ++ +LDE D + D F ++ +I+
Sbjct: 117 TQERALQQGADILIATPGRLIDLINQKHVDLQHVEILVLDEADRML-DMGFIHDVKRIIA 175
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 176 KMPSKKQTLFFSATMPSEI 194
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|399057862|ref|ZP_10744291.1| DNA/RNA helicase, superfamily II [Novosphingobium sp. AP12]
gi|398041610|gb|EJL34666.1| DNA/RNA helicase, superfamily II [Novosphingobium sp. AP12]
Length = 499
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++S++ + P+ IQA PPV+ K I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLQSVEAAGYTEPTPIQAQTIPPVLMMKDIIGIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G + + PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 61 -----DILGHGRRRALMPRSLILEPTRELAAQVAENFEKYGK-NHDLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L GVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QLKALSAGVDVLIATPGRLMDLFERGKIMLTGCELLVIDEADRML-DMGFIPDIETICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P + S + V G
Sbjct: 174 LPANRQTLLFSATMP-PVIKKLADRFLTNPKYIEVARPASNNTSIVQHKVAVSSRG---- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL Q+++ V+ IVF N+K+
Sbjct: 229 ----------KREALRQILKTDNVTTAIVFANRKT 253
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV+VLIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNATATN 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRALKQVIVFCNSK 267
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 145/278 (52%), Gaps = 21/278 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ELG S+ ++ ++K P++IQ + P +++ ++ +L +GSGKTLAY+LP++Q
Sbjct: 117 SFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLPLVQ 176
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR++E PR V+L PT EL+ QV +S+ FRS +V+GG R +
Sbjct: 177 LLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHA-RFRSTMVSGGGRMRP 235
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVAL 442
Q ++L +D+++ TPGR + I++G + +++ +LDE D +F+ F L
Sbjct: 236 QEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPL 295
Query: 443 QSLISSSPVTA-QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
++ S S Q + VTAT+ + + E F + + +H+ + SG
Sbjct: 296 KNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSG 355
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
+ NK ALLQ++E S ++ +VFCN
Sbjct: 356 SE-----------NKLEALLQVLEPSLAKGNRVMVFCN 382
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G + +++++ Q + +P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 43 SFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQ 102
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 103 RLLP------LASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 155
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 156 VDMNPQTAELRRGVEILIATPGRLLDHVQQKSTSLAQVQMLVLDEADRML-DMGFLPDLQ 214
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + V +E + +
Sbjct: 215 RILNLLPSQRQTLLFSATFSAEI-KKLASTYLRDPVT-----------IEVARSNSTASN 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E A +K++A++QLI + + + IVFCN K
Sbjct: 263 VRQIVFEVAEPDKQAAVVQLIRQRELKQVIVFCNSK 298
>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 653
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 139/267 (52%), Gaps = 25/267 (9%)
Query: 282 SLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ-GLSK 340
+++ +P++IQ + P V+ G S +L +GSGKTLAYLLP++Q LR +E G+S
Sbjct: 132 AMREAGITKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQLLRHDEATLGMSM 191
Query: 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVL 400
PR V+L PT EL QV +S+S FRS +V+GG R K Q ++L VD++
Sbjct: 192 KPR-RPRAVVLCPTRELTEQVFRVAKSISHHAR-FRSTMVSGGTRLKPQEDSLNMPVDMV 249
Query: 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISSSPVTA---- 453
+ TPGR + IKEG + +++ +LDE D +F+ ED L L + S
Sbjct: 250 VGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAPLKNRSSKPGDQGL 309
Query: 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQESDKTPETA 512
Q + V+AT+ + + E F + + RI+ +F + SG +
Sbjct: 310 QTILVSATMTKGVQKLIDEEFEGIEHLRTSTFQKRIATARHDF-IKLSGSE--------- 359
Query: 513 FLNKKSALLQLIEKSPV--SKTIVFCN 537
NK ALLQ++E S +K +VFCN
Sbjct: 360 --NKLEALLQVLEPSLAKGNKVMVFCN 384
>gi|146338133|ref|YP_001203181.1| ATP-dependent RNA helicase [Bradyrhizobium sp. ORS 278]
gi|146190939|emb|CAL74944.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 278]
Length = 473
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 142/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K S L QL++ PV++ +VF K
Sbjct: 224 VIQVDHSAKPSLLAQLLKNEPVNRALVFTRTK 255
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 141/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 102 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 161
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 162 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 214
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 215 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 273
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 274 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 321
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 322 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 357
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 140/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 146 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 257
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 258 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 314
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K SA++QL+ + + IVFCN K
Sbjct: 315 EGD---------KHSAVVQLLRDRGLKQVIVFCNSK 341
>gi|225420023|ref|ZP_03762326.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
DSM 15981]
gi|225041279|gb|EEG51525.1| hypothetical protein CLOSTASPAR_06366 [Clostridium asparagiforme
DSM 15981]
Length = 552
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 142/271 (52%), Gaps = 19/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L ++ +LK +N+ P+ IQ A P V+ G+ + Q+G+GKT A+ +P +Q
Sbjct: 3 FKDLNIMPEILRALKNENYKIPTPIQEEAIPVVLSGRDLLGCAQTGTGKTAAFAIPTLQM 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L EE K T + +++ PT ELA Q+ + + + +S VV GG QK Q
Sbjct: 63 LSGEETPRWEKRTI---KALVVTPTRELAIQIYDSFNTYGQF-TDLKSCVVYGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
ENL+ GVD+L+ATPGR + L+ + I+ + ++ +LDE D + D F ++ +I+ +
Sbjct: 119 EENLKRGVDILVATPGRLLDLMDQKIVNIEKIKILVLDEADRML-DMGFIHDVKKIIART 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDC-KVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P +I ++ + K+ + P + +E++L DK
Sbjct: 178 PAEKQTLFFSATMPPDIAKLAAKILKNPEKIEITPAATTVE-AIEQYLYFV------DKG 230
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NKK LL +++ + T+VF K
Sbjct: 231 ------NKKDLLLHILKTKDLDSTLVFTRTK 255
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 139/271 (51%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + ++ ++K + + P+ IQ A P + GK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDELQLQETLLRAVKAEGYTTPTPIQQKAIPHALAGKDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K +P R V+ GG Q
Sbjct: 62 RLSAKAPPGGARPV----RCLVLTPTRELAGQVGESFATYGK-NLPLRHTVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ GVDVL+ATPGR + L+++G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQALQRGVDVLVATPGRLLDLMEQGCVSLRSLEVFVLDEADRML-DMGFIHDVRRVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP +I + + D P ++P + + S +
Sbjct: 176 LPSKRQTLFFSATLPPDIVDLARSILTD------PVRVEVTPA------SSTAETVSQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L L+++ +S+ +VF K
Sbjct: 224 YFVEREQKRGLLTHLLKEGNISRALVFTRTK 254
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 119/198 (60%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++++L ++N+ +P+ IQ A PPV+ G+ Q+G+GKT A+LLP+IQ
Sbjct: 2 TFEQLKLIPPILKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + K R +IL PT ELA Q+ N ++ + + RS V+ GG QK
Sbjct: 62 LLSAQQRRPSGKRVI---RSLILTPTRELAIQISDNFKAYGRF-LNLRSAVIVGGVSQKA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++G+D+LIATPGR + L+ +G L +++ +LDE D + D F ++ +I+
Sbjct: 118 QEQALEQGMDILIATPGRLIDLMNQGFADLRHVQILVLDEADRML-DMGFIHDMRRIIAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 177 LPAKRQTLFFSATMPPEI 194
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 69 IIQRLLPH------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q + L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI + + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E DKT A++QLI + + + IVFCN K
Sbjct: 241 ---EGDKT---------GAVVQLIRERNLKQVIVFCNSK 267
>gi|386400169|ref|ZP_10084947.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740795|gb|EIG60991.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 518
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 145/272 (53%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+T RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RLLENRIKPQPKTT----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 183 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIQQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ F K + L +L++ PV++ +VF K
Sbjct: 230 IIQVDFSAKPALLAKLLKDEPVNRALVFTRTK 261
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 35 STATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 94
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL STS SP R +IL PT ELA QV +N +S +K RS VV
Sbjct: 95 IIQRLLPH------ASTSASPARHPVRALILTPTRELADQVAANVQSYAKH-TALRSAVV 147
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q + L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 148 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 206
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI + + + + + + + + + +
Sbjct: 207 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVA 266
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E DKT A++QLI + + + IVFCN K
Sbjct: 267 ---EGDKT---------GAVVQLIRERNLKQVIVFCNSK 293
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 141/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + ++ ++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|355621610|ref|ZP_09046211.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
gi|354823417|gb|EHF07748.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
Length = 477
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 145/276 (52%), Gaps = 27/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L S ++++L+ + ++ PS IQ A P V+ G+ + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
L + + SK R +IL PT ELA Q+ N + S+ V R V+ GG
Sbjct: 62 NLMKPSEKKYSKRVI---RSLILTPTRELALQIAENFKEYGSRTSV--RCAVIFGGVSAN 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+E L+ G+D+L+ATPGR L+ +G + L ++ +LDE D + D F ++ +IS
Sbjct: 117 PQIEELRRGIDILVATPGRLNDLVGQGFVDLAHVEIFVLDEADRML-DMGFIHDVRKIIS 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCS---GDQ 503
PV Q L +AT+P EI + D K++ P ++P ++D S D+
Sbjct: 176 LLPVRKQTLLFSATMPAEI-----QALTD-KLLHNPARVEVTPVSSTVDIIDASLYYVDK 229
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E NK+S L+ L+ ++ T+VF K
Sbjct: 230 E----------NKRSLLVYLLNHEDITSTLVFTRTK 255
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQAIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|393723703|ref|ZP_10343630.1| putative helicase [Sphingomonas sp. PAMC 26605]
Length = 552
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P ++ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRTLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P I+ ++++LV + ++
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLANPKTIEVARPATANIN--IKQWLVHVTAAKKR 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
DK L++L+ + V I+F N+K+
Sbjct: 231 DK------------LIELLRQEDVKTGIIFSNRKT 253
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI D + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E DKT A++QLI + + + IVFCN K
Sbjct: 241 ---EGDKT---------GAVVQLIRERGLKQVIVFCNSK 267
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 141/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP++Q
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPILQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYGKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRSRGLKQVIVFCNSK 267
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + +P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N S +K RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHSYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKARQTLLFSATFSPEIKKLAATYLTNPQTIEVARSNATATNVTQIVYDIA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A+++LI + + IVFCN K
Sbjct: 241 EGD---------KQAAVVKLIRDRALKQVIVFCNSK 267
>gi|108761880|ref|YP_632259.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
1622]
Length = 501
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 139/271 (51%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L D ++ ++K + + P+ IQ A P + G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G ++ R ++L PT ELA QV + + K G+P R V+ GG Q
Sbjct: 62 RLSAKAPAGGARPV----RCLVLTPTRELAGQVGDSFGTYGK-GLPLRHAVIFGGVGQNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L+++G + L +L +LDE D + D F ++ +I +
Sbjct: 117 QVQTLRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRML-DMGFIHDVRRVIKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP +I + + D P ++P + + S +
Sbjct: 176 LPPKRQTLFFSATLPPDIVDLARSILTD------PIRVEVTPA------SSTAETVSQQV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L L+++ + + +VF K
Sbjct: 224 YFVEREQKRGLLTHLLKEGNIHRALVFTRTK 254
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STSTFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI D + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVRQIVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E DKT A++QLI + + + IVFCN K
Sbjct: 241 ---EGDKT---------GAVVQLIRERGLKQVIVFCNSK 267
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 267
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 267
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 143/279 (51%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 31 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 91 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 143
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 144 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLP 202
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI KL + R +E + +
Sbjct: 203 DLQRILNLLPKERQTLLFSATFSGEI-KKLAATY-----------LRNPQTIEVARSNST 250
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ E A +K A+++LI + + + IVFCN K
Sbjct: 251 ATNVTQVVYEVAEGDKTGAVVKLIRERGLKQVIVFCNSK 289
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 140/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 86 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 145
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 146 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 198
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 199 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 257
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 258 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 314
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K SA++QL+ + + IVFCN K
Sbjct: 315 EGD---------KHSAVVQLLRDRGLKQVIVFCNSK 341
>gi|296533085|ref|ZP_06895723.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296266590|gb|EFH12577.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 389
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 139/271 (51%), Gaps = 20/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ +L ++ + P+ IQA A P V+ G+ + Q+G+GKT A+ LPV+
Sbjct: 4 FAALGLAEPLLRALTQEGYTTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPVLHH 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + G R +IL+PT ELASQ+ N R+ + + S V+ GG + Q
Sbjct: 64 LADRK----APAPRGGCRALILSPTRELASQIHDNIRAYGRF-LGLSSAVIFGGVGARPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ GVDVL+ATPGR ++ G +L + +LDE D + D F A++ L S
Sbjct: 119 VEALRRGVDVLVATPGRLQDHVQTGAAKLQGVEVLVLDEADQML-DRGFWPAVKRLSSVM 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q LF +AT+P EI E+ D KV + P + + +E+ L+ Q
Sbjct: 178 SKNRQTLFFSATMPAEIAKIAAEMLKDPAKVSVTP-VATTAERIEQKLIHIDASQ----- 231
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +++ + + + +VF K
Sbjct: 232 -------KRVLLSEMLRQPGIGRALVFARTK 255
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|367474852|ref|ZP_09474344.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
gi|365272847|emb|CCD86812.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 285]
Length = 469
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 143/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVDVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L QL+++ PV++ +VF K
Sbjct: 224 VIQVDHSAKPNLLAQLLKEEPVNRALVFTRTK 255
>gi|326793753|ref|YP_004311573.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544517|gb|ADZ89737.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 425
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++K Q + PS IQAMA P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFSSLGLSAPILDAIKSQGYSEPSPIQAMAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E K+ S + R ++L PT ELA+QV N + S+ +P R+ VV GG +
Sbjct: 62 LLSKGE-----KARSNNVRALVLTPTRELAAQVHENAAAYSQ-NLPLRAEVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L + + L +LDE D + D F ++ ++
Sbjct: 116 QMMKLRRGVDVLVATPGRLLDLFSQNAISFKQLEILVLDEADRML-DMGFIHDIKRILKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I V D V + + + L+ DK+
Sbjct: 175 LPKERQTLLFSATFSDDIRELAQNVVKDAVEVSVTPPNTTVEVIRQSLIPV------DKS 228
Query: 509 PETAFLNKKSALLQ-LIEKSPVSKTIVFCNKK 539
KKSA L+ LI+ +S+ +VF K
Sbjct: 229 -------KKSAALKFLIQSRDLSQVLVFSRTK 253
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 94 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 263 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 289
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|346311637|ref|ZP_08853640.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
gi|345900700|gb|EGX70520.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
Length = 679
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 25/291 (8%)
Query: 259 SADGDFFSRKS--------FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+AD F S+ + F +LG SD ++ +++ + + +QAMA P V+ G+ +
Sbjct: 15 AADASFSSKSADAADELARFADLGLSDEVLAAVEDLGYEHATPVQAMAIPQVLAGRDILA 74
Query: 311 ADQSGSGKTLAYLLPVIQRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369
A Q+G+GKT A+LLP + RL R + +G + S PR++I+ PT ELA Q+ C+ ++
Sbjct: 75 AAQTGTGKTAAFLLPTMSRLPRVKRARGRAMSVGCGPRMLIITPTRELAQQIDDVCKKVA 134
Query: 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429
++ V GG Q L+ G D+L+ATPGR + LI +G L ++ +LDE
Sbjct: 135 -ARTRHTAVTVVGGVSYNPQKSALKRGCDILVATPGRLVDLIDQGACMLDEVQVLVLDEA 193
Query: 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRI 488
D + D F A++ ++S +P Q L +ATL + ++ D +V + P
Sbjct: 194 DRML-DMGFLPAVRKIVSYTPADRQTLLFSATLDEAAVGSITDLVSDPARVEIAPATS-T 251
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ +E++L+ S K L L+ + IVF K
Sbjct: 252 AETVEQYLLPVS------------LEAKNGVLADLLLAQGTERVIVFTRTK 290
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 141/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 35 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 94
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 95 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TPLRSAVVFGG 147
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 148 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 206
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 207 RILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 263
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 264 EGD---------KQAAVVQLLRDRGLKQVIVFCNSK 290
>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
Length = 591
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 153/287 (53%), Gaps = 29/287 (10%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF ELG ++ + +++ + P+++Q MA P +++G++ ++A +GSGKTLAY+LP
Sbjct: 99 STQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLP 158
Query: 326 VIQR-----LRQEELQGLSKSTSGSPRVVILAPTAELASQVL--SNCRSLSK---C-GVP 374
++Q LR++E++ + PR ++L PT EL QVL RSL K C
Sbjct: 159 LVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSFCHHAR 218
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434
FRS +++GGFR + Q + L +D+++ TPGR + ++EG L +++ ++DE D +F
Sbjct: 219 FRSAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEADTMF- 277
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEI-YNKLVEV-FPDCKVVMGPGMHRISPGL 492
D F L+ +I P+ + L + + KL++ FP + + +H+
Sbjct: 278 DRGFGPELKKII--DPLRNRALRNGSDFQTILSVQKLLDTEFPGIRHIFTSTLHKKVDTS 335
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCN 537
F G+ +NK AL+Q++E + S+ +VFC
Sbjct: 336 RHFFQKVPGN-----------INKLEALVQVLEPALAKGSRCMVFCR 371
>gi|302766713|ref|XP_002966777.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
gi|300166197|gb|EFJ32804.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
Length = 464
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 152/284 (53%), Gaps = 27/284 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +SF ELG ++ + +++ + P+++Q MA P +++G++ ++A +GSGKTLAY+LP
Sbjct: 99 STQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTLAYMLP 158
Query: 326 VIQR-----LRQEELQGLSKSTSGSPRVVILAPTAELASQVL--SNCRSLSKCG--VPFR 376
++Q LR++E++ + PR ++L PT EL QVL RSL K FR
Sbjct: 159 LVQVYFIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVLIFFYSRSLQKHSHHARFR 218
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
S +++GGFR + Q + L +D+++ TPGR + ++EG L +++ ++DE D +F D
Sbjct: 219 SAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNLAFGDIKYVVIDEADTMF-DR 277
Query: 437 DFEVALQSLISSSPVTAQYLFVTATLPVEI-YNKLVEV-FPDCKVVMGPGMHRISPGLEE 494
F L+ +I P+ + L + + KL++ FP + + +H+
Sbjct: 278 GFGPELKKII--DPLRNRALRNGSDFQTILSVQKLLDTEFPGIRHIFTSTLHKKVDTSRH 335
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFC 536
F G+ +NK AL+Q++E + S+ +VFC
Sbjct: 336 FFQKVPGN-----------INKLEALVQVLEPALAKGSRCMVFC 368
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|365875010|ref|ZP_09414540.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis Ag1]
gi|442589346|ref|ZP_21008154.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis R26]
gi|365757122|gb|EHM99031.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis Ag1]
gi|442560956|gb|ELR78183.1| ATP-dependent RNA helicase RhlE [Elizabethkingia anophelis R26]
Length = 424
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 19/272 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L + + ++L+ + + P+ IQ A P ++ GK + Q+G+GKT A+ +P++Q
Sbjct: 2 NFNDLKLIEPISKALQEEGYKTPTSIQEQAIPKILAGKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + +K G + +IL PT ELA Q+ N + + +P ++MV+ GG +Q
Sbjct: 62 LLTE---RSENKHRKGVVKALILTPTRELAIQIEENFEAYGRH-LPLKTMVIFGGVKQGA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L+ GVD+L+ATPGR + I +GI+ L NL +LDE D + D F ++ ++
Sbjct: 118 QEEKLKRGVDILVATPGRLLDFIGQGIITLKNLDIFVLDEADRML-DMGFVHDVKRILKY 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF++AT+P EI E+ + KV + P +S E ++ DK
Sbjct: 177 LPEKRQNLFLSATMPKEIQKLASEILVNPVKVEVAP----VSSTAETIDQSVFFVEKEDK 232
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ L+ L++ +S IVF K
Sbjct: 233 I---------NLLIHLLQDQSLSPVIVFSRTK 255
>gi|103486540|ref|YP_616101.1| DEAD/DEAH box helicase [Sphingopyxis alaskensis RB2256]
gi|98976617|gb|ABF52768.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
RB2256]
Length = 458
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 139/274 (50%), Gaps = 26/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++ ++ + P+ IQA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSDELLRAIDESGYSEPTAIQAGAIPSVLMMRDMIGIAQTGTGKTASFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +IL PT ELA+QV N K ++++ GG + Q
Sbjct: 63 LAHGRARALM------PRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++++ +
Sbjct: 116 IKALEKGVDVLIATPGRLMDLFERGKILLTGCNLLVIDEADRML-DMGFIPDIENICTKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I KL + F P V P + +E+F+V
Sbjct: 175 PANRQTLLFSATMPPPI-KKLADKFLSNPKTIEVARPASR--NENIEQFVV--------- 222
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
KT E K+ L LIE +S IVFCN+K+
Sbjct: 223 KTSERG---KRDTLRGLIEAEDLSTAIVFCNRKT 253
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|383769279|ref|YP_005448342.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
gi|381357400|dbj|BAL74230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
Length = 526
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 144/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L + ++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQDFGLAEPLARALAEEKYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 132 QVRSLMQGVDVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRML-DMGFINDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 191 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIQQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ F K + L QL+++ PV++ +VF K
Sbjct: 238 IIQVDFSAKPAFLAQLLKQEPVNRALVFTRTK 269
>gi|320166666|gb|EFW43565.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 754
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 146/296 (49%), Gaps = 37/296 (12%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++K+F+ LG S +I +L Q P++IQ+ A P V+ G +A ++GSGKTL+YLLP
Sbjct: 351 NKKTFESLGLSPALIAALAEQEITTPTRIQSRALPQVLAGHDTGIAAETGSGKTLSYLLP 410
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+++ +++ + QG G PR +IL P LA QV + + L K V F + V GG R
Sbjct: 411 IVEGIKKSDAQG-DFVRPGRPRALILVPHRLLAMQVANVSKRLGKA-VKFSTFCVMGGDR 468
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE---DFEVAL 442
Q +++ +DV++ATP R + L++ + L +++ +LDE D LF ++ + L
Sbjct: 469 ISRQKSAMEKPLDVMVATPQRLLELLQNKYVSLADVKYLVLDEADALFEEQFLAEITTVL 528
Query: 443 QSLI-------SSSPVTA------------QYLFVTATLPVEIYNKLVEVFPDCKVVMG- 482
+ LI +S+ A Q +FV AT + + + FP +
Sbjct: 529 RPLIERRKAIVASAEAEAQGQAPQRTFTPLQVMFVCATKMQHLVQAIRQYFPFGHIAAAT 588
Query: 483 -PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
P +HR L +D G + K S L +L +K S T++FC+
Sbjct: 589 TPTLHRALANLNHRFIDVVGT-----------IGKLSELKELAKKGFKSPTLIFCD 633
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 142/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + +TS SP R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 72 RLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVHAYAK-HTPLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNAAAST 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|338973033|ref|ZP_08628403.1| ATP-dependent RNA helicase RhlE [Bradyrhizobiaceae bacterium SG-6C]
gi|338233786|gb|EGP08906.1| ATP-dependent RNA helicase RhlE [Bradyrhizobiaceae bacterium SG-6C]
Length = 489
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 146/272 (53%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALKEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-MRLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ +GV+V++ATPGR + +++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRSVMQGVEVMVATPGRLLDMVQGNALKLNQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + K
Sbjct: 177 LPIKRQTLFFSATMPKDIADLADQMLNDPARVAVTP-------------VSSTVERITQK 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L QL++ PV++ +VF K
Sbjct: 224 VLQVDHSAKPAILAQLLKNEPVNRALVFTRTK 255
>gi|402771172|ref|YP_006590709.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401773192|emb|CCJ06058.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 442
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 137/272 (50%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +L+R+ + P+ +QA + P +++G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFSDLGLNEILLRALEREGYTTPTPVQAQSIPALLQGRDLLGVAQTGTGKTAAFALPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L + + R +ILAPT ELA+Q+ + RS P ++V GG +
Sbjct: 62 RL----LADKRRPAPNTARALILAPTRELAAQIADSFRSYGHFFRPSVGVIV-GGVSHRP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L G+DVL+ATPGR + + G L+L +LDE D + D F V ++ +++
Sbjct: 117 QNEMLARGLDVLVATPGRLLDHLGSGRLRLATTEVLVLDEADHML-DLGFIVPIRQIVAK 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT+P EI ++ D KV + P + + G
Sbjct: 176 LPKQRQTLLFSATMPREISALADDMLRDPAKVSVTPAATTAERVAQHVYLVSGG------ 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L++L+ +S+ IVF K
Sbjct: 230 -------AKRDLLVELLNDREISRAIVFTRTK 254
>gi|357031470|ref|ZP_09093413.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414700|gb|EHH68344.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 398
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 121/212 (57%), Gaps = 10/212 (4%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S F LG ++ +L++ RPS IQ A P ++ G+ ++A Q+GSGKT A++LP
Sbjct: 23 SSPDFPALGLMPPLLAALEQAGHKRPSDIQTEAIPALLAGRDVLVASQTGSGKTAAFVLP 82
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++Q+L + E T+G PR +IL PT ELA+Q S CR+L + +P ++ V+ GG
Sbjct: 83 MLQKLAETE------RTNG-PRALILEPTRELAAQTASVCRTLGR-RLPLKTRVICGGIS 134
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
++ QL L +G D+L+AT GR + + + + L NL +LDE D L DEDF ++ +L
Sbjct: 135 REQQLRTLADGPDILVATHGRLLDFVTQADIVLENLTYLVLDEADRLL-DEDFSASMTAL 193
Query: 446 ISSSP-VTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q +F +ATLP + + V D
Sbjct: 194 APYFPDHPPQTVFCSATLPEPVMELALRVTRD 225
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 115/199 (57%), Gaps = 9/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG S+ +++++ ++ + PS IQ A PPV+EGK + + Q+G+GKT + LP++
Sbjct: 2 TFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ K+ P R +IL PT ELA+Q+ +N + S+ + RS V+ GG QK
Sbjct: 62 LLSEQ------KALRHRPVRALILTPTRELAAQIFANVKEYSEF-LDLRSAVIFGGVNQK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ NL+ G+DVL+ATPGR + L + L L + +LDE D + D F ++ ++
Sbjct: 115 PQIANLKRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADRML-DMGFLRDIERVMK 173
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 174 LIPAKRQNLMFSATFSKDI 192
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 140/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 94 RLLPH------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 263 EGD---------KQAAVVQLLRGRGLKQVIVFCNSK 289
>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
Length = 638
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAIRALILTPTRELALQIGESFDAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L++GVD+LIA PGR LI +G + L NL +LDE D + D F ++ +I+
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSNLEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT+P EI
Sbjct: 175 LPGERQNLMFSATMPTEI 192
>gi|260063256|ref|YP_003196336.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
HTCC2501]
gi|88783350|gb|EAR14522.1| DEAD/DEAH box helicase-like protein [Robiginitalea biformata
HTCC2501]
Length = 422
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 127/218 (58%), Gaps = 10/218 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++ ++ +LK++N+ RP+ IQA A P V+ + + + Q+G+GKT A+ +P++Q
Sbjct: 2 TFEQLELAEPILRALKKENYSRPTDIQAQAIPHVLNRRDVMGSAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
L ++ G G +I+ PT ELA Q+ SL+ G R+ V+ GG +Q
Sbjct: 62 HLERDRRYG---GKRGVVNALIVTPTRELAIQI---GESLTAYGHYTGIRNTVIFGGVKQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+E L+ GVD+L+ATPGR + L+ +GI+ L + +LDE D + D F ++ +I
Sbjct: 116 GKQVEALRRGVDILVATPGRLLDLMDQGIISLSKVEYFVLDEADRML-DMGFIHDIRKII 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP 483
+ P Q LF +AT+P +I + ++ D KV + P
Sbjct: 175 ARLPAERQSLFFSATMPDDIVSLSRKILSDPVKVAVSP 212
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 143/279 (51%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F + G + +++++K + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STETFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + +TS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ANTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q + L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI KL + R +E + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEI-KKLAATY-----------LRNPQTIEVARSNST 228
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ E A +K A++QLI + + + IVFCN K
Sbjct: 229 ATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVIVFCNSK 267
>gi|92116022|ref|YP_575751.1| DEAD/DEAH box helicase [Nitrobacter hamburgensis X14]
gi|91798916|gb|ABE61291.1| DEAD/DEAH box helicase-like protein [Nitrobacter hamburgensis X14]
Length = 477
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 144/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N+L P+ IQ P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPITRALAEENYLTPTPIQTQTIPLALAGRDIVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ KS RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RLLQNRIKPQPKSC----RVLVLSPTRELSGQILESFNAYGRH-LRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + +GV+V++ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRAVMQGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRML-DMGFIHDIRKVVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
PV Q LF +AT+P +I ++ D +V + P V + D+ + +
Sbjct: 183 LPVKRQTLFFSATMPKDIAELAEQMLRDPARVAVTP-------------VASTVDRIAQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ +K + L QL+++ PV++ ++F K
Sbjct: 230 IIQVDHASKPAFLAQLLKQEPVNRALIFTRTK 261
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 140/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPH------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K++A++QL+ + + IVFCN K
Sbjct: 241 EGD---------KQAAVVQLLRGRGLKQVIVFCNSK 267
>gi|404406153|ref|ZP_10997737.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 541
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 118/211 (55%), Gaps = 6/211 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG S+ ++ ++ + + P+ IQ A PPV+EG+ Q+G+GKT A+ LP++Q
Sbjct: 3 FQDLGLSEPLLRAIGEKGYTDPTPIQQQAIPPVLEGRDLQGCAQTGTGKTAAFTLPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + R +++ PT ELA Q+ CR ++ + R V+ GG Q+ Q
Sbjct: 63 LAAEPAARGRREI----RALVITPTRELAIQIDECCRDYARY-LSIRHCVIFGGVNQRPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQ GVD+L+ATPGR + LI +G + L +R +LDE D + D F ++ ++
Sbjct: 118 VDALQRGVDLLVATPGRLLDLIGQGYISLDKIRFFVLDEADRML-DMGFIHDIRRILPLL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
P Q LF +AT+P +I ++ D +V
Sbjct: 177 PAQRQTLFFSATMPPDIAQLAAKILHDPVLV 207
>gi|365880479|ref|ZP_09419846.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
gi|365291464|emb|CCD92377.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. ORS 375]
Length = 481
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 142/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVEVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K S L QL++ PV++ +VF K
Sbjct: 224 VIQVDHSAKPSLLAQLLKDEPVNRALVFTRTK 255
>gi|118475108|ref|YP_891966.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. fetus 82-40]
gi|118414334|gb|ABK82754.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. fetus 82-40]
Length = 624
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 115/197 (58%), Gaps = 6/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S ++E+LK N+ P+QIQ +A P +++GK + ++G+GKT A+ LP++++
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E T RV++L PT ELA+QV N +S +K +PF+++ V GG Q
Sbjct: 63 LSSKERNKKRPQT----RVLVLVPTRELANQVTQNIKSYAK-KLPFKTLPVFGGVSSYPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G+D+++ATPGR + L + L L ++ + DE D +F D F ++ ++
Sbjct: 118 IQALKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMF-DMGFIHDIKQIVKML 176
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT P E+
Sbjct: 177 PEKRQNLLFSATYPSEV 193
>gi|393770590|ref|ZP_10359069.1| DEAD/DEAH box helicase-like protein [Novosphingobium sp. Rr 2-17]
gi|392723937|gb|EIZ81323.1| DEAD/DEAH box helicase-like protein [Novosphingobium sp. Rr 2-17]
Length = 502
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 137/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 NFADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 62 VLAHGRRRAL------MPRSLILEPTRELAAQVAENFEKYGK-NHNLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ+GVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QVKALQDGVDVLIATPGRLMDLFERGKIMLSGCELLVIDEADRML-DMGFIPDIETICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P + +S + V
Sbjct: 174 LPTNRQTLLFSATMP-PVIKKLADRFLSNPKYIEVARPASNNLSIVQHKVAVSSR----- 227
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
NK+ AL ++ V+ IVF N+K+
Sbjct: 228 ---------NKREALRTILRTDNVTTAIVFANRKT 253
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 116/199 (58%), Gaps = 14/199 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++E++ + P+ IQA A P V++G+ + A Q+G+GKT A+ LP++ +
Sbjct: 3 FDQLGLAPSLLEAVAAAGYSEPTPIQAKAIPAVLDGQDVLAAAQTGTGKTAAFTLPLLHK 62
Query: 330 L--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L RQE+ PRV++LAPT ELA+QV + R+ K G RS V+ GG +
Sbjct: 63 LGDRQEK----------KPRVLVLAPTRELAAQVNESVRTYGKSGA-IRSTVIFGGVGYQ 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ ++GVD+++ATPGR + L++EG L N++ +LDE D + D F ++ ++
Sbjct: 112 PQIAQFKKGVDIVVATPGRLLDLLQEGHADLSNIQTLVLDEADRML-DMGFIHDIKRVLK 170
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 171 YVPEKRQTLLFSATFSKDI 189
>gi|58040739|ref|YP_192703.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58003153|gb|AAW62047.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 393
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 117/195 (60%), Gaps = 10/195 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ +L + RPS IQ A PP++EGK ++ Q+GSGKT A++LP++Q+
Sbjct: 22 FEELGLIAPLLATLAQAGHKRPSLIQTQAIPPLLEGKDVLVGSQTGSGKTAAFVLPMLQK 81
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 82 LTE-------AGPAPGPRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++++ +GVD+++AT GR + L+ + L L +L +LDE D L DEDF ++ +L
Sbjct: 134 VQSVSDGVDIIVATHGRLLDLVMQADLVLEHLTYLVLDEADRLL-DEDFSASMTALTPYF 192
Query: 450 P-VTAQYLFVTATLP 463
P Q +F +ATLP
Sbjct: 193 PDQPPQTVFCSATLP 207
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 145/273 (53%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG + +++++++Q + PS IQ A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFSELGLAAPLLQAIEKQGYTTPSPIQQQAIPIILEGKDILAAAQTGTGKTAGFSLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L G + S R +IL PT ELA+QV N +S S+ +P ++ VV GG
Sbjct: 62 RL----LDG-RPAASNCVRALILTPTRELAAQVEENVKSFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 116 QMKALRSGVDVLIATPGRLLDLYQQNAVKFSQLETLVLDEADRML-DMGFIHDIKRILKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDC--KVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI L + + KV P + +++ LV D
Sbjct: 175 LPTKRQTLLFSATFSSEI-TTLAQTITNNPEKVSTAPANTTVE-TVQQHLVPI------D 226
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ +TA AL+ LI+++ + +VF K
Sbjct: 227 KSKKTA------ALISLIKQNGWKQVLVFSRTK 253
>gi|339444742|ref|YP_004710746.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
gi|338904494|dbj|BAK44345.1| superfamily II DNA helicase [Eggerthella sp. YY7918]
Length = 504
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 142/271 (52%), Gaps = 21/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S+++++++ R + P+ +Q A P +EG+ I A ++G+GKT A+ LP + R
Sbjct: 4 FNELGLSEHVLQAVARLGYEAPTPVQEQAIPLALEGRDLIAAAKTGTGKTAAFSLPSLDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ G +K G P ++++ PT ELA Q+ C +++ R + V GG + Q
Sbjct: 64 V------GHAKGGQG-PLMLVVTPTRELAQQIGEVCSAIA-VSTHHRILTVVGGLSYEPQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ GVD+LIATPGR + L+++G ++L ++ +LDE D + D F A++ +I ++
Sbjct: 116 ISKLKHGVDILIATPGRLVDLMEQGAVRLGDVEVLVLDEADRML-DMGFWPAMKKIIGAT 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q L +AT+ I N + ++ + V + +E++++ + + D
Sbjct: 175 PSTRQTLLFSATIDASIKNSVGKLLHNPAFVEIAHKGETADTVEQYIIHTQQNLKPD--- 231
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
L L+ + + IVF +S
Sbjct: 232 ---------LLKALLAEKGSERVIVFARTRS 253
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 143/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + ++S SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPQ------ANSSASPARHPVRALILTPTRELADQVAANVHAYAKH-TALRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNSQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + + P +E + +
Sbjct: 184 RILNLLPKQRQTLLFSATFSPEI-KKLASTY-----LSNPQT------IEVARSNATATN 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ E A +K++A+++LI + + IVFCN K
Sbjct: 232 VTQVVYEIAEGDKQAAVVKLIRDRSLKQVIVFCNSK 267
>gi|373115679|ref|ZP_09529847.1| hypothetical protein HMPREF0995_00683 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670129|gb|EHO35216.1| hypothetical protein HMPREF0995_00683 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 579
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG ++ ++ +L Q + +PS IQA A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFQELGLNEPILRALADQGYEQPSPIQAKAIPPALTGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + QG R +IL PT ELA Q+ + + K +P RS V+ GG Q
Sbjct: 62 QLSGRKAQGRPI------RALILTPTRELALQIQESFEAYGKY-LPLRSTVIFGGVGQAP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L++GVD+L+ATPGR L + ++ L L +LDE D + D F ++ ++
Sbjct: 115 QVERLKKGVDILVATPGRLGDLYGQKLIDLSRLEIFVLDEADRML-DMGFIHDVRRILGW 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P E+
Sbjct: 174 LPAQKQTLFFSATMPPEV 191
>gi|383645365|ref|ZP_09957771.1| putative helicase [Sphingomonas elodea ATCC 31461]
Length = 478
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 143/277 (51%), Gaps = 28/277 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++ ++ + P+ IQ A P V+ GK I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLRAVTDAGYTEPTPIQRQAIPSVLMGKDLIGIAQTGTGKTAAFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR-SM-VVTGGFRQ 386
L G ++ + PR +IL PT ELA+QV N K G+ + SM ++ GG +
Sbjct: 62 VL------GEGRTRALMPRSLILEPTRELAAQVAEN---FEKYGLNHKLSMALLIGGVQM 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L++GVDVLIATPGR M L G + L ++DE D + D F ++ +
Sbjct: 113 GDQVKALEKGVDVLIATPGRLMDLYGRGKILLTGCSLLVIDEADRML-DMGFIPDIEEIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ P Q L +AT+P I KL + F P V P + + Q
Sbjct: 172 TKLPKNRQTLLFSATMPPPI-KKLADKFLTDPKTIEVARPAT-----------TNVNITQ 219
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ P TA + K+ L +L+++ VS I+FCN+K+
Sbjct: 220 RIVQVPATAHV-KRDVLRRLLQQDEVSTAIIFCNRKT 255
>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
M21/2]
gi|158446036|gb|EDP23039.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii M21/2]
Length = 641
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAVRALILTPTRELALQIGESFEAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L++GVD+LIA PGR LI +G + L L +LDE D + D F ++ +I+
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI + D P ++ P V + D+
Sbjct: 175 LPAQRQNLMFSATMPAEIEQLAAGILHD------PAFVKVDP------VSSTVDRIQQSL 222
Query: 509 PETAFLNKKSALLQLIE--KSPVSKTIVFCNKK 539
NKK L LI+ + PV +VF K
Sbjct: 223 YYVEKGNKKLLLPWLIKNLQPPVVNALVFSRTK 255
>gi|392399099|ref|YP_006435700.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390530177|gb|AFM05907.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 461
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 3/199 (1%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF +LG SD +++++K+ + PS IQ P V++ K + + Q+G+GKT + LP++
Sbjct: 12 KSFADLGLSDELLQAVKKVGYTSPSPIQEKVIPFVLDRKDVLASAQTGTGKTAGFTLPML 71
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q L Q +++ SK S R +IL PT ELA+QV N + S+ + RS V+ GG Q
Sbjct: 72 QLLTQ-DVKQRSKIRRRSLRCLILTPTRELAAQVFENVKEYSEF-LDIRSAVIFGGVNQN 129
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVDVL+ATPGR + L + L L ++ +LDE D + D F ++ +I
Sbjct: 130 PQIRTLKNGVDVLVATPGRLLDLEGQKALSLADVEILVLDEADRML-DMGFLHDIKRVIK 188
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 189 LVPTKRQNLLFSATFSKEI 207
>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
SL3/3]
Length = 641
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 135/273 (49%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL S ++ +++ + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RLTAN-----APRRKGAVRALILTPTRELALQIGESFEAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L++GVD+LIA PGR LI +G + L L +LDE D + D F ++ +I+
Sbjct: 116 QVEALKKGVDILIACPGRLNDLIGQGFIDLSALEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI + D P ++ P V + D+
Sbjct: 175 LPAQRQNLMFSATMPAEIEQLAAGILHD------PAFVKVDP------VSSTVDRIQQSL 222
Query: 509 PETAFLNKKSALLQLIE--KSPVSKTIVFCNKK 539
NKK L LI+ + PV +VF K
Sbjct: 223 YYVEKGNKKLLLPWLIKNLQPPVVNALVFSRTK 255
>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821, partial [Collinsella stercoris
DSM 13279]
gi|210160006|gb|EEA90977.1| DEAD/DEAH box helicase, partial [Collinsella stercoris DSM 13279]
Length = 595
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 142/274 (51%), Gaps = 19/274 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + P+ +QA + P ++G+ + A Q+G+GKT A+LLP +
Sbjct: 40 TFADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGTGKTAAFLLPTMN 99
Query: 329 RL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + + + P ++++ PT ELA Q+ CR+++KC S+ V GG
Sbjct: 100 NLPHVPRGRARGRVAAQGPLMLVVTPTRELAQQIEDVCRAIAKC-TGHTSVTVVGGVSYN 158
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + L+ G D+LIATPGR LI +G L ++ +LDE D + D F A++ ++
Sbjct: 159 PQRDKLKRGCDILIATPGRLQDLIDQGACSLDQVQVLVLDEADRML-DMGFLPAVRRIVG 217
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ Q L +ATL + + ++ D +V + P + + +E++++ S
Sbjct: 218 YTRDDRQTLLFSATLDEQAVGSITDLVHDPARVEIAP-VTSTADTVEQYVLPVS------ 270
Query: 507 KTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
L K+ALL ++++ S+ IVFC K
Sbjct: 271 -------LEAKNALLASVLKREGASRAIVFCRTK 297
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 142/279 (50%), Gaps = 25/279 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S +F + G + +++++K + P+ IQ A P V+ G+ + A Q+G+GKT ++ LP
Sbjct: 9 STATFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLP 68
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL + STS SP R +IL PT ELA QV +N ++ +K RS VV
Sbjct: 69 IIQRLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TALRSAVV 121
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q E L+ GV++LIATPGR + +++ L ++ +LDE D + D F
Sbjct: 122 FGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLP 180
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +++ P Q L +AT EI + + + + + + + + + +
Sbjct: 181 DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVA 240
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E DKT A++QLI + + + IVFCN K
Sbjct: 241 ---EGDKT---------GAVVQLIRERGLKQVIVFCNSK 267
>gi|365122316|ref|ZP_09339220.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642816|gb|EHL82156.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
Length = 421
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 141/270 (52%), Gaps = 18/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L ++ ++ +L+ + ++ P+ IQA A P V++GK + Q+G+GKT A+ +P+IQ
Sbjct: 3 FENLKLTEPVLRALQDEGYITPTPIQAKAIPCVLDGKDLLGCAQTGTGKTAAFSIPIIQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + S R +IL PT ELA+Q+ N + S+ + V+ GG QK+Q
Sbjct: 63 LLAEA----GGNGRRSVRALILTPTRELAAQIGDNINAYSR-HTRLKHTVIFGGVSQKSQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L++GVD+L+ATPGR + L+ + I+ L +R +LDE D + D F ++ ++
Sbjct: 118 VEALRKGVDILVATPGRLLDLVSQKIIDLQTIRFFVLDEADRML-DMGFIHDIKKILLLL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI KL +++ P M ++P + D
Sbjct: 177 PRKRQSLFFSATMPAEI-EKLSR-----QILNHPEMIEVTPA------SSTVDVIEQHVY 224
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K LL L++ + +VF K
Sbjct: 225 SVEKADKSKLLLHLLQDKNIESVLVFTRTK 254
>gi|365891188|ref|ZP_09429640.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
gi|365332881|emb|CCE02171.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Bradyrhizobium sp. STM 3809]
Length = 473
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 141/272 (51%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPLALQGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLDNRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRMSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGVEVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADSMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K S L QL++ PV++ +VF K
Sbjct: 224 VIQVDHSAKPSLLAQLLKNEPVNRALVFTRTK 255
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 139/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 72 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 184 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 240
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K A++QL+ + + +VFCN K
Sbjct: 241 EGD---------KHGAVVQLLRDRGLKQVLVFCNSK 267
>gi|402823501|ref|ZP_10872924.1| DEAD/DEAH box helicase [Sphingomonas sp. LH128]
gi|402262992|gb|EJU12932.1| DEAD/DEAH box helicase [Sphingomonas sp. LH128]
Length = 461
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++++++ + P+ IQA PPV+ K I Q+G+GKT A++LP+I
Sbjct: 2 SFADLGLSDELLQAVEAAGYTEPTPIQAQTIPPVLMMKDLIGIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G + + PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 61 -----DILGHGRRRALMPRSLILEPTRELAAQVAENFEKYGKNH-DLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L GVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QLKALSAGVDVLIATPGRLMDLFERGKIMLTGCELLVIDEADRML-DMGFIPDIETICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P ++ + +V
Sbjct: 174 LPANRQTLLFSATMP-PVIKKLADRFLTNPKYVEVARPASTNLNIVQHKVMVPAR----- 227
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL Q++ V+ IVF N+K+
Sbjct: 228 ---------KKREALRQILRSDNVTSAIVFANRKT 253
>gi|365844881|ref|ZP_09385691.1| putative ATP-dependent RNA helicase RhlE [Flavonifractor plautii
ATCC 29863]
gi|364562600|gb|EHM40436.1| putative ATP-dependent RNA helicase RhlE [Flavonifractor plautii
ATCC 29863]
Length = 579
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG ++ ++ +L Q + +PS IQA A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFQELGLNEPILRALADQGYEQPSPIQAKAIPPALTGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + QG R +IL PT ELA Q+ + + K +P RS V+ GG Q
Sbjct: 62 QLSGRKAQGRPI------RALILTPTRELALQIQESFEAYGKY-LPLRSTVIFGGVGQAP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVD+L+ATPGR L + ++ L L +LDE D + D F ++ ++
Sbjct: 115 QVERLKNGVDILVATPGRLGDLYGQKLIDLSRLEIFVLDEADRML-DMGFIHDVRRILGW 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P E+
Sbjct: 174 LPAQKQTLFFSATMPPEV 191
>gi|302383278|ref|YP_003819101.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302193906|gb|ADL01478.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 521
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 23/274 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I+R
Sbjct: 4 FSALGLSPTTLQAVIDTGYTTATPIQAQAIPVALAGRDVLGIAQTGTGKTAAFTLPLIER 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++LAPT ELA QV + +K G +++ GG Q
Sbjct: 64 LSK------GRARARMPRALVLAPTRELADQVAMSFEKYAK-GTKLSWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L + G + L + ++DE D + D F ++ + +
Sbjct: 117 VAALNKGVDVLIATPGRLLDLFERGKMMLNGVELMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+P EI +L + F P P M + + ++LV
Sbjct: 176 PPKRQTLFFSATMPPEI-TRLTQAFLKDPTRIEASRPAM--TAETITQYLV--------- 223
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ P + K++AL +L+ ++ V IVFCN+KS
Sbjct: 224 RIPSSDPKAKRAALRELMARADVRNGIVFCNRKS 257
>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 453
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 117/212 (55%), Gaps = 14/212 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQ A P V+EGK + A Q+G+GKT A+ LP+++
Sbjct: 2 SFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++ S R +IL PT ELA+QV C S+ +P RS VV GG +
Sbjct: 62 RLSKGD-----RARSNQARALILTPTRELAAQV-GECVSIYSSKLPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDV++ATPGR + L + ++ +L +LDE D + D F ++ ++
Sbjct: 116 QMMRLRRGVDVIVATPGRLLDLYNQNAVRFQDLEVLVLDEADRML-DMGFIHDIRKILDI 174
Query: 449 SPVTAQYLFVTAT-------LPVEIYNKLVEV 473
P Q L +AT L E+ N VE+
Sbjct: 175 LPKRRQNLMFSATFSNDIRKLAKELVNNPVEI 206
>gi|449017358|dbj|BAM80760.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 566
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 36/293 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +L P+ IQ A P ++ G S I+ +GSGKTLAYLLP++Q
Sbjct: 81 SFASLGVFPELVTALDAVGIQTPTAIQTRAVPAILGGASVIIGSATGSGKTLAYLLPIVQ 140
Query: 329 RLRQEELQGLSKSTS-----------------GSPRVVILAPTAELASQVLSNCRSLSKC 371
RL+ EE Q +S+ + G+PR +++ PT ELA QVL C+ LS
Sbjct: 141 RLKSEEQQVVSEMQTEEAAEMMRRGRHPLRRPGAPRALVITPTRELAEQVLGVCKHLSHY 200
Query: 372 GVPFRSMVVTGGFR-QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
+ R+ G R + QLE ++ VD+LI T GR + L+ E +++L +++ +LDEVD
Sbjct: 201 -IKIRAASGLGVRRIVRAQLE--EQPVDILITTSGRLLQLLDEQLIRLRSVQTVVLDEVD 257
Query: 431 ILFNDE-DFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS 489
L DE F ++ ++ + T Q++ V AT P E P K + +H+
Sbjct: 258 TLLLDEGGFHDDIRQIMGKARNTQQFIAVGATHPTAAQKLYREFCPGAKPIT-VDLHQTP 316
Query: 490 PGLEEFLVDCSGDQESDKTPETAFL-----NKKSALLQLIEKSPVSKTIVFCN 537
L + + SG + KT E L +KK+ LL + +VFCN
Sbjct: 317 SNLRQRFIRVSG--ANGKTDEILALLKEETHKKTRLLS------GGRVMVFCN 361
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 138/272 (50%), Gaps = 17/272 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 12 TFDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV +N +S +K RS VV GG
Sbjct: 72 RLL--PLANTSASPARHPVRALILTPTRELADQVAANVQSYAKH-TALRSAVVFGGVDMN 128
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ +++
Sbjct: 129 PQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRML-DMGFLPDLQRILN 187
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI KL + R +E + + +
Sbjct: 188 LLPTERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNSTATNVTQI 235
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E A +K A++QLI + + + IVFCN K
Sbjct: 236 VYEVAEGDKTGAVVQLIRERSLKQVIVFCNSK 267
>gi|385333348|ref|YP_005887299.1| DEAD/DEAH box helicase [Marinobacter adhaerens HP15]
gi|311696498|gb|ADP99371.1| DEAD/DEAH box helicase domain protein [Marinobacter adhaerens HP15]
Length = 440
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G + T PR +IL PT ELA+QV + SK +P ++ VV GG +
Sbjct: 62 RL------GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-IPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ ++S
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILSL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LPAKRQNLLFSATFSNEI 191
>gi|384222064|ref|YP_005613230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
gi|354960963|dbj|BAL13642.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium japonicum USDA
6]
Length = 522
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 143/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G+DVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRALMPGLDVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTAERINQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ F K + L +L++ PV++ +VF K
Sbjct: 224 IIQVDFSAKPAFLTKLLKDEPVNRALVFTRTK 255
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 139/276 (50%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G + +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT ++ LP+IQ
Sbjct: 34 TFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +IL PT ELA QV +N + +K RS VV GG
Sbjct: 94 RLLPQ------ASTSASPARHPVRALILTPTRELADQVAANVHAYAKH-TSLRSAVVFGG 146
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 147 VDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 205
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI + + + + + + + + D +
Sbjct: 206 RILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA--- 262
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D K A++QL+ + + +VFCN K
Sbjct: 263 EGD---------KHGAVVQLLRDRGLKQVLVFCNSK 289
>gi|435852049|ref|YP_007313635.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
gi|433662679|gb|AGB50105.1| DNA/RNA helicase, superfamily II [Methanomethylovorans hollandica
DSM 15978]
Length = 422
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 40/282 (14%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ L + +L+ + ++ P+ IQA A P ++E + I Q+G+GKT A++LP++Q
Sbjct: 2 SFENLKIKKTLQRALESEGYITPTPIQAQAIPHLLENRDLIGIAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQ 386
+L + S S +PRV++LAPT ELA+Q+ S S G + FR VV GG Q
Sbjct: 62 KLSETN----KPSKSRAPRVLVLAPTRELAAQI---GDSFSTYGQFIRFRYTVVFGGVGQ 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L GVDVLIATPGR + L+ +G ++L + +LDE D + D F + ++
Sbjct: 115 GPQVKALAHGVDVLIATPGRLLDLLDQGHVKLNEVEFFVLDEADRML-DMGFIKDVYRIV 173
Query: 447 SSSPVTAQYLFVTATLP---VEIYNKL------VEVFPDCKVVMGPGMHRISPGLEEFLV 497
PV Q LF +AT+ E+ KL VEV P V +++F+
Sbjct: 174 PLLPVKRQSLFFSATMSPQIAELARKLLTSPVHVEVSPQATTV---------EKIDQFVF 224
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DQE NK + LL L++ + + +VF K
Sbjct: 225 FV--DQE----------NKDNLLLGLLQHNHLRSVLVFTRTK 254
>gi|114569901|ref|YP_756581.1| DEAD/DEAH box helicase [Maricaulis maris MCS10]
gi|114340363|gb|ABI65643.1| DEAD/DEAH box helicase domain protein [Maricaulis maris MCS10]
Length = 452
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 141/270 (52%), Gaps = 18/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +L + + P+ IQ P ++EG+ + Q+G+GKT +++LP++ R
Sbjct: 4 FSDLGLAEPILRALNDEGYETPTPIQREVIPAMIEGRDIVGIAQTGTGKTASFVLPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E K+ R +IL+PT EL++Q+L N R S+ + S +V GG + Q
Sbjct: 64 LIEENRPTHPKTC----RALILSPTRELSAQILENVRGYSRH-MRVSSTLVVGGVKPGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVL+ATPGR + L++ G ++L + ILDE D + D F A++ ++S
Sbjct: 119 IRALSKGVDVLVATPGRLLDLMQSGAVKLSETKILILDEADQML-DLGFFPAIRKIVSFL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q ++AT+P I E+ D K V R +E+ +V +
Sbjct: 178 PNKRQTALLSATMPKPIRALAQEMLDDPKEVSVAPASRPIERIEQSVVLLPKE------- 230
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+KK LL+L+ V + IVF K
Sbjct: 231 -----SKKDLLLELMSDRAVERAIVFSRTK 255
>gi|414170096|ref|ZP_11425710.1| hypothetical protein HMPREF9696_03565 [Afipia clevelandensis ATCC
49720]
gi|410884768|gb|EKS32588.1| hypothetical protein HMPREF9696_03565 [Afipia clevelandensis ATCC
49720]
Length = 491
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 145/272 (53%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N++ P+ IQ P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALKEENYVTPTPIQTQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-MRLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ +GV+V++ATPGR + +++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRSVMQGVEVMVATPGRLLDMVQGNALKLNQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + K
Sbjct: 177 LPIKRQTLFFSATMPKDIADLADQMLNDPARVAVTP-------------VSSTVERITQK 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L QL++ PV++ +VF K
Sbjct: 224 VLQVDHSAKPAILAQLLKNEPVNRALVFTRTK 255
>gi|358449520|ref|ZP_09160004.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357226275|gb|EHJ04756.1| DEAD/DEAH box helicase domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 440
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATSDQGYETPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G + T PR +IL PT ELA+QV + SK VP ++ VV GG +
Sbjct: 62 RL------GENPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-VPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILAL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LPAKRQNLLFSATFSNEI 191
>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
Length = 442
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 140/274 (51%), Gaps = 25/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S ++ ++ R + +P+ IQA A P ++G+ +L+ Q+GSGKT A++LP++Q
Sbjct: 4 TFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPILQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L E + S PR +I+ PT ELA QV + S+ S+ + GG +
Sbjct: 64 QLAAEP------TKSKLPRALIVIPTRELAQQVQDSVFQYSREFKELYSITLVGGTAYQK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GV +++ATPGR + ++EG L L +R +LDE D + D F + ++I
Sbjct: 118 QIRALKKGVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADRML-DMGFSDDMHAIIKQ 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDC--KVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q + +AT + K+ F K+++ P I E + + DQ
Sbjct: 177 CPQNRQTIMSSATWDGNV-GKIAAGFTHNAEKIIIAPETSHI-----EEISYFTDDQA-- 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+K + L +L+ V++ IVF KS
Sbjct: 229 --------HKNAVLDRLLADEAVTQCIVFTATKS 254
>gi|283779149|ref|YP_003369904.1| DEAD/DEAH box helicase [Pirellula staleyi DSM 6068]
gi|283437602|gb|ADB16044.1| DEAD/DEAH box helicase domain protein [Pirellula staleyi DSM 6068]
Length = 598
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 4/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++LG ++ ++ +L N+ P+ IQ A PP + G+ Q+G+GKT A+ LP++
Sbjct: 2 SFEDLGLAEPLVRALNAANYTEPTAIQLQAIPPAIAGRDLQGCAQTGTGKTAAFALPLLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + QG K PR ++L+PT ELA Q+ + R + + S+ + GG Q
Sbjct: 62 RLIKNPRQG--KLRGRLPRALVLSPTRELAGQIHDSVRRYGRHAMQ-NSLTIYGGVSQVP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L G DVLIATPGR L+++G + L + +LDE D + D F ++ +I+
Sbjct: 119 QVKGLNAGQDVLIATPGRLCDLMQQGYINLSEIEVFVLDEADRML-DMGFMPDIRRIIAK 177
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT+P EI
Sbjct: 178 LPQQKQTLLFSATMPPEI 195
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 140/272 (51%), Gaps = 19/272 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++ ++ Q + +P+ IQ A P V+ G+ + A Q+G+GKT A++LP+++R
Sbjct: 3 FSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L++ S S + P R ++L+PT ELA Q+ N ++ +K +P R+ V GG
Sbjct: 63 LKK--FANTSVSPAMHPIRALVLSPTRELADQIGVNVQTYTKY-LPLRATTVFGGVNMDP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L+ GV++LIATPGR + I++ +QL + +LDE D + D F ++ ++
Sbjct: 120 QTQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRML-DMGFIQDIRKIMGM 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP-GLEEFLVDCSGDQESDK 507
P Q L +AT P+ K + MH +P +E + + DQ
Sbjct: 179 LPKERQTLLFSATFA-----------PEIKRLAADFMH--APQTVEVARQNATNDQVEQL 225
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K+ L LI +S+ IVFC K
Sbjct: 226 VFQVDNFKKRQLLAHLIRSREMSQVIVFCKTK 257
>gi|331696881|ref|YP_004333120.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326951570|gb|AEA25267.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 659
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 140/275 (50%), Gaps = 23/275 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + + +L + RPS IQA A P +++G+ I +G+GKT A+ LP++QR
Sbjct: 92 FADLGLAPELQRALDELGYERPSPIQAEAIPSLIDGRDLIGQAATGTGKTAAFALPMLQR 151
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L QE S +P ++LAPT ELA QV K G+ R + V GG Q
Sbjct: 152 LAQER----RGSRGTAPLGLVLAPTRELAMQVTEAIARYGK-GLRARVLAVYGGAPIGPQ 206
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L L+ GVDV++ATPGR + LI G L L L +LDE D + D F +++++ ++
Sbjct: 207 LGALKRGVDVVVATPGRAIDLINRGALSLDELEVVVLDEADEML-DMGFVEDIETILQAT 265
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q + +AT+P + +EV + P L + + E+ +
Sbjct: 266 PDTRQAVLFSATMP-----RRIEVLARTYLT--------DPVLVRIQREEVPEGEAPRVR 312
Query: 510 ETAFLNKKS----ALLQLIEKSPVSKTIVFCNKKS 540
+TA++ +S AL +++E + IVFC ++
Sbjct: 313 QTAYMVPRSHTTAALGRILELERPTAAIVFCRTRA 347
>gi|408374555|ref|ZP_11172240.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407765513|gb|EKF73965.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 452
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ + + +PS IQA A P V++GK + A Q+G+GKT + LP+++
Sbjct: 2 SFSNLGLSDALLSAVAEKGYTQPSPIQAQAIPAVLDGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K R ++L PT ELA+QV + + K +P RS VV GG +
Sbjct: 62 RLSHG-----PKVRHNQVRALVLTPTRELAAQVAESVETYGK-NLPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QMQRLRGGVDVLVATPGRLLDLYQQNAVRFDQLEILVLDEADRML-DMGFIHDIRKILAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPPKRQNLMFSATFSPEI 192
>gi|156357705|ref|XP_001624354.1| predicted protein [Nematostella vectensis]
gi|156211127|gb|EDO32254.1| predicted protein [Nematostella vectensis]
Length = 349
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 141/280 (50%), Gaps = 24/280 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++++L N +P+ IQ + P ++ I A Q+GSGKTLAYL P++
Sbjct: 3 SFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLVH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLR++E + + PR I+ P ELA+Q+L +SL FRS+ + GG +QK
Sbjct: 63 RLREDEERHGILARLKRPRACIVVPARELATQILKTAKSLCH-HARFRSVGLIGGRKQKW 121
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
++L+ VD+L+ATPG + ++ L +L ++DE D +F D F+ ++ +
Sbjct: 122 MRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADTMF-DASFKSLTMEILHT 180
Query: 449 SPVTAQYLFVTATLP--------VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
V+ L T+ +E K V+ C G+HR+ P + + +
Sbjct: 181 INVSQLQLIYNFTVYQSLQRLSCIEASEKTVKHLETC----SSGLHRVLPHVRHKFIKLN 236
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+++++ E LL+ KSP +TIVFCN S
Sbjct: 237 QHEKAERIVE---------LLKKDSKSP-GQTIVFCNSAS 266
>gi|413942754|gb|AFW75403.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 360
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 143/270 (52%), Gaps = 25/270 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+ELG + ++ +L +P++IQ + P V+ G S +L +GSGKTLAYLLP++
Sbjct: 95 ESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLV 154
Query: 328 QRLRQEE-LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q LR++E + G+S PR V+L PT EL QV +S+S FRS +V+GG R
Sbjct: 155 QLLRRDEAMLGMSMKPR-RPRAVVLCPTRELTEQVYRVAKSISHHAR-FRSTMVSGGTRL 212
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q ++L VD+++ TPGR + IK+G + +++ +LDE D +F D+ F ++ +
Sbjct: 213 RPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMF-DQGFGPDIRKFL 271
Query: 447 SSSPVTA--------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLV 497
+ A Q + VTAT+ + + E F + R+S +F +
Sbjct: 272 APLKNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDF-I 330
Query: 498 DCSGDQESDKTPETAFLNKKSALLQLIEKS 527
SG + NK ALLQ++E S
Sbjct: 331 KLSGAE-----------NKLEALLQVLEPS 349
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 111/199 (55%), Gaps = 9/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG S ++++++ + + +PS IQ A P ++EGK + + Q+G+GKT + LPV+Q
Sbjct: 2 TFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K P R ++L PT ELA+QV N R SK V +S VV GG K
Sbjct: 62 YLVE------TKHPKYRPLRALVLTPTRELAAQVHDNVREYSKY-VDIKSTVVFGGVNAK 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L + L + ILDE D + D F + +IS
Sbjct: 115 PQIATLRSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRML-DMGFVRDINKIIS 173
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 174 FMPAKRQNLMFSATFSNDI 192
>gi|407775962|ref|ZP_11123253.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
gi|407281034|gb|EKF06599.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira profundimaris WP0211]
Length = 605
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 146/275 (53%), Gaps = 28/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++ +L ++ + P+ IQA + P +++GK + Q+G+GKT A+ LP++ R
Sbjct: 4 FSELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPILDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + +++ G+ RV++LAPT ELA+Q+ + R+ + + R+ VV GG Q
Sbjct: 64 LSKSQ----TRTPKGACRVLVLAPTRELAAQIGESFRAYGRF-LNVRTAVVVGGVAPGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GV+VL+ATPGR + + G L L ++ +LDE D + D F ++ +I
Sbjct: 119 IKAITPGVEVLVATPGRLLDHVDSGKLSLKHVEVVVLDEADHML-DLGFLPPIKRIIKML 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P +I ++ D KV + P + QE +
Sbjct: 178 PRDRQNLFFSATMPTQIGQLAGDMLSDPVKVSVTP---------------VATTQE--RV 220
Query: 509 PETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
++ +L K+ L +L++ +T+VF K
Sbjct: 221 EQSVYLIERTRKRQLLAELLDNPAFKRTLVFTRTK 255
>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
Length = 458
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 145/280 (51%), Gaps = 27/280 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ +FK+L S ++++L+ + ++ PS IQ A P V+ G+ + Q+G+GKT A+ L
Sbjct: 10 YHYMNFKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFAL 69
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGG 383
P+IQ L + + SK R +IL PT +LA Q+ N + S+ V R V+ GG
Sbjct: 70 PIIQNLMKPSEKKYSKRVI---RSLILTPTRKLALQIAENFKEYGSRTSV--RCAVIFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+E L+ G+D+L+ATPGR L+ +G + L + +LDE D + D F ++
Sbjct: 125 VSANPQIEELRRGIDILVATPGRLNDLVGQGFVDLAYVEIFVLDEADRML-DMGFIHDVK 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCS-- 500
+IS PV Q L +AT+P EI + D K++ P ++P ++D S
Sbjct: 184 KIISLLPVRKQTLLFSATMPAEI-----QALTD-KLLHNPARVEVTPVSSTVDIIDASLY 237
Query: 501 -GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
D+E NK+S L+ L+ ++ T+VF K
Sbjct: 238 YVDKE----------NKRSLLVYLLNHEDITSTLVFTRTK 267
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 6/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +++++++ F P+ IQ A P + G+ + + +G+GKT A++LP +Q
Sbjct: 9 SFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLPSLQ 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + PRV++L PT ELASQVL + R+LSK G ++ + GG +
Sbjct: 69 RI----ATTARAEAAWGPRVLVLTPTRELASQVLESVRNLSKFGR-IQTGTILGGMPYRQ 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QLE L+ VD+++ATPGR M ++ G L L + +LDE D + D F A++ + ++
Sbjct: 124 QLEMLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRML-DMGFREAVEFIAAA 182
Query: 449 SPVTAQYLFVTATL 462
P Q L TATL
Sbjct: 183 CPAERQTLLFTATL 196
>gi|350571452|ref|ZP_08939778.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349792116|gb|EGZ45981.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 441
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 111/192 (57%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +LK + + P+ IQA A P +EG+ + Q+GSGKT A+LLP +QR
Sbjct: 5 FSDLLHDKNILSALKTEGYETPTPIQAQALPAALEGRDIMAGAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ + PR ++LAPT ELA+QV N ++ +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKSGKGPRALVLAPTRELAAQVEKNAQAYAKNMKWFRTVTIVGGSSFGQQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L + VD+++ATPGR M L+ G + L ILDE D + D F ++++++++
Sbjct: 120 IRALSKPVDLVVATPGRLMDLMDSGKVDFDRLEVLILDEADRML-DMGFIDDIETIVAAT 178
Query: 450 PVTAQYLFVTAT 461
P + Q L +AT
Sbjct: 179 PESRQTLLFSAT 190
>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 509
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 22/274 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +LG S+ + +++R + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 2 QNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K +PRV++++PT ELA Q+ C +++ + + V GG
Sbjct: 62 STLPR------GKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVF-GGTPYG 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ ++ G DVLIATPGR L+ +G++ L ++ +LDE D + D F A+ +++
Sbjct: 115 PQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRML-DMGFLPAVTTIVD 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q L +AT+ I L + D VV + +E+F++
Sbjct: 174 ATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMM---------- 223
Query: 508 TPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKKS 540
P F KK LLQ L+E+ + IVF K+
Sbjct: 224 -PIANF--KKPELLQALLEEKGSDRVIVFARTKN 254
>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 508
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 22/274 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +LG S+ + +++R + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 2 QNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K +PRV++++PT ELA Q+ C +++ + + V GG
Sbjct: 62 STLPR------GKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVF-GGTPYG 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ ++ G DVLIATPGR L+ +G++ L ++ +LDE D + D F A+ +++
Sbjct: 115 PQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRML-DMGFLPAVTTIVD 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q L +AT+ I L + D VV + +E+F++
Sbjct: 174 ATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMM---------- 223
Query: 508 TPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKKS 540
P F KK LLQ L+E+ + IVF K+
Sbjct: 224 -PIANF--KKPELLQALLEEKGSDRVIVFARTKN 254
>gi|393719361|ref|ZP_10339288.1| putative helicase [Sphingomonas echinoides ATCC 14820]
Length = 486
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 138/275 (50%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P V+ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSVLMGKDLVAIAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P ++ ++++LV+ S +
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLDNPKTIEVARPATANVN--IKQWLVNVSAAK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ L+ L+ V I+F N+K+
Sbjct: 229 ----------KRDTLISLLRSEDVQTGIIFSNRKT 253
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 134/271 (49%), Gaps = 22/271 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ +++++K + F+ PS IQ P V+EG+ + Q+G+GKT A+ LP+
Sbjct: 2 NFNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPI-- 59
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LQ LSK R +I+ PT ELA Q+ + K + V+ GG Q
Sbjct: 60 ------LQSLSKGEGSGVRALIITPTRELAIQIYESFECFGKY-TSLKQSVIYGGVGQSL 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ G+D+LIATPGR LI +G + L + +LDE D + D F ++ +I
Sbjct: 113 QVNSLKAGIDILIATPGRLNDLIGQGYITLDAIEMFVLDEADQML-DMGFLNDIKKVIKL 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q L +AT+P EI + + + P + +ISP V + D
Sbjct: 172 LPKTRQTLLFSATMPKEIESLATNLLNN------PEIIKISP------VTSTVDSIEQSV 219
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
LNK S L LI++ +S+ +VF K
Sbjct: 220 YFVDRLNKISLLTSLIKEHKMSRVLVFTKTK 250
>gi|149375720|ref|ZP_01893489.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
gi|149360122|gb|EDM48577.1| Superfamily II DNA and RNA helicase [Marinobacter algicola DG893]
Length = 441
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 113/198 (57%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQAKAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + T PRV+ILAPT ELA+QV + S+ +P +S VV GG +
Sbjct: 62 RLAE------NPRTGKGPRVLILAPTRELAAQVHDSVALYSRY-MPTKSAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILAL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LPAKRQNLLFSATFSNEI 191
>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
L2-6]
Length = 648
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 7/212 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L S +++++ + PS IQA A PPV+EG+ + Q+G+GKT A+ LP++
Sbjct: 2 TFNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RL-----SAAAPRRKGAVRALILTPTRELALQIGESFDAYGKY-LKLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E +++GVD+LIA PGR LI +G + L NL +LDE D + D F ++ +I+
Sbjct: 116 QVEAIRKGVDILIACPGRLNDLIGQGHIDLSNLEVFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
P Q L +AT+P EI + D V
Sbjct: 175 LPAKRQNLMFSATMPKEIEQLAAGILHDPAFV 206
>gi|399077018|ref|ZP_10752254.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398036112|gb|EJL29334.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 663
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I +
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPMIDK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR +++APT ELA QV S+ +K G ++ GG Q
Sbjct: 64 L------ASGRAKARMPRALVIAPTRELADQVASSFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 VKKLDRGVDVLIATPGRLLDHFERGGLLMTGVQIMVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + +V K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLRDPVRIEASRPATTNENITQLMV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K+ AL LIEK+ + IVFCN+K+
Sbjct: 227 SSDPKAKRLALRALIEKAQIETGIVFCNRKT 257
>gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 132/256 (51%), Gaps = 21/256 (8%)
Query: 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350
P++IQ + P V+EG+S +L +GSGKTLAY+LP++Q LR++E PR V+
Sbjct: 12 PTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQLLRRDEALSGVLMKPRRPRAVV 71
Query: 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL 410
L PT EL+ QV +S+S FRS +V+GG R + Q ++L +D+++ TPGR +
Sbjct: 72 LCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNIPIDMVVGTPGRVLQH 130
Query: 411 IKEGILQLINLRCAILDEVDILFND------EDFEVALQSLISSSPVTA-QYLFVTATLP 463
I+EG + ++ +LDE D +F+ F L++ S S Q + VTAT+
Sbjct: 131 IEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLKNRASKSDDQGFQTVLVTATMT 190
Query: 464 VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL 523
+ + E F + +H+ + SG + NK ALLQ+
Sbjct: 191 KAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSE-----------NKLEALLQV 239
Query: 524 IEKSPV--SKTIVFCN 537
+E S +K +VFCN
Sbjct: 240 LEPSLAKGNKVMVFCN 255
>gi|114797080|ref|YP_759424.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
15444]
gi|114737254|gb|ABI75379.1| putative ATP-dependent RNA helicase RhlE [Hyphomonas neptunium ATCC
15444]
Length = 536
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 138/276 (50%), Gaps = 19/276 (6%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ +F + G ++ +++++ + P+ IQ A P ++ G Q+G+GKT A++L
Sbjct: 1 MTETTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+IQRL ++ + PR +IL PT ELA+QV N K + ++ GG
Sbjct: 61 PMIQRL------STGRARARMPRCLILCPTRELAAQVAENFEKYGKY-LKLTMALLIGGV 113
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
K Q LQ GVDVLIATPGR M G L ++ + I+DE D + D F ++
Sbjct: 114 SFKEQETLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRML-DMGFIPDIEK 172
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ + P Q L +AT P +I +L + F D K + + + + +F+V
Sbjct: 173 ICAKLPANRQTLLFSATFPTDI-QRLAKTFQKDPKKIEVTRPAQTAETISQFVV------ 225
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K P +++AL ++IE + V IVFCN+K
Sbjct: 226 ---KLPTNDGKARRTALRRVIEATNVKNGIVFCNRK 258
>gi|86142428|ref|ZP_01060938.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
MED217]
gi|85831180|gb|EAQ49637.1| putative ATP-dependent RNA helicase [Leeuwenhoekiella blandensis
MED217]
Length = 442
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 119/200 (59%), Gaps = 5/200 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG D ++++L + + P+ IQ A P +++GK + + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKELGLIDPILKALADKGYTHPTPIQRQAIPILLKGKDLLGSAQTGTGKTAAFTIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + G K + +I+ PT ELA Q+ N + SK +S V+ GG +Q +
Sbjct: 62 QIYDKVGSGKGKR---KLKALIVTPTRELAIQIEDNVKEYSKY-TGIQSTVIFGGVKQAS 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ +++GVDVL ATPGR + L+K+G + L + +LDE D + D F ++ ++
Sbjct: 118 QVQAMRKGVDVLTATPGRLLDLVKQGFIDLGTIEYLVLDEADQML-DMGFIHDIKKILKL 176
Query: 449 SPVTAQYLFVTATLPVEIYN 468
P Q LF +AT+P EI +
Sbjct: 177 VPHKRQSLFFSATMPKEIID 196
>gi|383450999|ref|YP_005357720.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium
indicum GPTSA100-9]
gi|380502621|emb|CCG53663.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium indicum GPTSA100-9]
Length = 431
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 144/271 (53%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + E LK +N++ P+ IQ A P ++E + Q+G+GKT A+ +P++
Sbjct: 2 TFEDLKLHRNITEVLKEENYVAPTPIQQQAIPIILEEHDLVGCAQTGTGKTAAFAIPILN 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G SK+ R ++LAPT ELA Q+L + + + + ++MV+ GG Q
Sbjct: 62 YL--HPIVG-SKNKRKVIRTLVLAPTRELAHQILDSFDTYGRY-MNTKAMVIYGGVNQVP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++EGVD+LIATPGR + L K+G + L +L ++DE D + D F ++ +I
Sbjct: 118 QVNKIKEGVDILIATPGRLLDLHKQGFIDLNHLHHLVIDEADQML-DMGFINDVKKIIKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P Q L +AT+P I +L + F + P ++P V + ++ + K
Sbjct: 177 TPDNRQTLLFSATMPAAI-RELADQF-----LKKPKFVSVTP------VSSTAEKVNQKV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ L+ L+++ +S +VF K
Sbjct: 225 YMVQKEDKRKLLIHLLQEEKISNVLVFVRTK 255
>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 458
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 139/271 (51%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + S+K +L P+ IQA+ P V++GK + + Q+G+GKT A++LP+I+
Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR E+ K ++L PT ELA+QV ++ ++ +K + RS V GG +
Sbjct: 85 LLRAED-----KPKRYQVHSLVLTPTRELAAQVEASAKAYTKY-LALRSDAVFGGVSIRP 138
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ GVD+L+ATPGR + LI + +++ NL+ +LDE D + D F ++ +I
Sbjct: 139 QVKRLQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRML-DMGFIRDIKKVIEY 197
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT I + + D + ++ +P +E + C ++ D
Sbjct: 198 LPKNRQNMMFSATFSTPIKKLALGLLNDPVEIKASVQNQAAPTIEHLVHPCDMARKVD-- 255
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
L LI+ + + +VF K
Sbjct: 256 ----------LLCHLIKTNKWKQVLVFARTK 276
>gi|407782464|ref|ZP_11129676.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
gi|407205829|gb|EKE75795.1| DEAD/DEAH box helicase [Oceanibaculum indicum P24]
Length = 515
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 121/215 (56%), Gaps = 5/215 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S +++++ + + P+ IQA A PPV+ G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FTDLGLSAPILKAVTAEGYETPTPIQAQAIPPVLTGRDLMGIAQTGTGKTAAFALPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E K+ GS RV+IL+PT ELASQ+ + R K + V GG Q
Sbjct: 64 LTEEGNH--IKTPRGSCRVLILSPTRELASQIAESFRVYGKF-LNLSVATVFGGVSAGPQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ LQ GVD+++ATPGR + ++ +++L + +LDE D + D F ++ ++ +
Sbjct: 121 AKALQRGVDIVVATPGRLIDHLQNRVVRLDQVEIFVLDEADQML-DMGFIQPIRRIVKTL 179
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP 483
P Q LF +AT+P EI E+ D KV + P
Sbjct: 180 PAKRQNLFFSATMPREIETLAGELLHDPAKVAVTP 214
>gi|254491257|ref|ZP_05104438.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxidans
DMS010]
gi|224463770|gb|EEF80038.1| DEAD/DEAH box helicase domain protein [Methylophaga thiooxydans
DMS010]
Length = 442
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG +D +++++ Q + PS IQA A PP+++G + A Q+G+GKT + LP++
Sbjct: 2 TFSSLGLADPILQAISEQGYDTPSPIQAKAIPPIMQGHDVMAAAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + +++ R ++L PT ELA+QV + ++ K +P RS VV GG +
Sbjct: 62 RLASGK-----PASANQVRALVLTPTRELAAQVADSVQTYGKF-LPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G D+L+ATPGR + L ++ ++ +L ILDE D + D F ++ +IS
Sbjct: 116 QMMRLRRGADILVATPGRLLDLYQQNAVRFDHLEVLILDEADRML-DMGFIHDIRKIISF 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPKKRQNLMFSATFSTDI 192
>gi|154496153|ref|ZP_02034849.1| hypothetical protein BACCAP_00437 [Bacteroides capillosus ATCC
29799]
gi|150274708|gb|EDN01772.1| DEAD/DEAH box helicase [Pseudoflavonifractor capillosus ATCC 29799]
Length = 636
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 116/201 (57%), Gaps = 10/201 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG + ++++L + +PS IQ A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFRELGLTQSILKALAELGYEKPSPIQEKAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + +G P R +IL PT ELA Q+ + + K +P RS V+ GG Q+
Sbjct: 62 RLGGD-------IPAGRPIRSLILTPTRELALQIQESFEAYGKH-LPLRSAVIFGGVGQQ 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L++GVD+L+ATPGR + L +G + L L +LDE D + D F ++ ++
Sbjct: 114 PQVDKLKKGVDILVATPGRLLDLQGQGFVDLSRLEIFVLDEADRML-DMGFLHDVRRVLK 172
Query: 448 SSPVTAQYLFVTATLPVEIYN 468
P Q LF +AT+P E+ +
Sbjct: 173 LLPAVKQTLFFSATMPPEVMD 193
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 141/283 (49%), Gaps = 33/283 (11%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ F + G S +++ +L Q ++ P+ IQA A P +++G+ + A Q+G+GKT + LP
Sbjct: 63 SQVRFADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALP 122
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQ L STS SP R +IL PT ELA QV N ++ ++ P RS VV
Sbjct: 123 IIQMLLAH------ASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQH-TPLRSTVV 175
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG K Q L+ GV+++IATPGR + +++ + L ++ ++DE D + D F
Sbjct: 176 FGGMDMKGQTVILKAGVEIVIATPGRLLDHVEQKNISLGQVQMLVMDEADRML-DMGFLP 234
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
LQ +I+ P Q L +AT EI KL F V +
Sbjct: 235 DLQRIINLLPAKRQNLMFSATFSPEI-KKLANTFLTNPVTIEV---------------AR 278
Query: 501 GDQESDKTPETAFL---NKKSALL-QLIEKSPVSKTIVFCNKK 539
+Q +DK + + N+K AL L+ + + + I+F N K
Sbjct: 279 SNQTADKVTQVVYKVPENQKHALTAHLLRQRELKQVIIFSNTK 321
>gi|402217906|gb|EJT97985.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 606
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 144/279 (51%), Gaps = 18/279 (6%)
Query: 269 SFKELGC-SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+F+EL C + +L++ F P+ IQA +P V+ GK I Q+GSGKTL+Y+LP I
Sbjct: 138 TFEELECIPQELHNTLRKTGFPTPTPIQAQTWPIVLSGKDLIGVAQTGSGKTLSYILPAI 197
Query: 328 QRLRQEELQGLSKSTSG----SPRVVILAPTAELASQVLSNC-RSLSKCGVPFRSMVVTG 382
LR + +STS SP +ILAPT ELA+Q+ + + + C + + V G
Sbjct: 198 AHLRAQPSWRPGQSTSSGFGISPSALILAPTRELATQIAAEAGKYMLSCRMAV--VPVYG 255
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G ++ Q+ NL+ G DV++ATPGR LI+ IL L + ++DE D + D FE +
Sbjct: 256 GADKRMQMNNLRRGADVVVATPGRLNDLIQSNILNLSRISYLVMDEADRML-DMGFEPQI 314
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSG 501
+ ++ P Q L +AT P E+ L F + PG H ++ G E + +
Sbjct: 315 RQIVEHLPPNRQTLLWSATWPKEV-QSLARDF------INPGGHVHVTVGSHELEANKNV 367
Query: 502 DQESDKTPETAF-LNKKSALLQLIEKSPVSKTIVFCNKK 539
Q ++ + + ++ L++++ +K I+F K
Sbjct: 368 LQRTEHVESSGKPMALQNHLVRILTAQKQAKIIIFVGTK 406
>gi|90418358|ref|ZP_01226270.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
manganoxydans SI85-9A1]
gi|90338030|gb|EAS51681.1| putative RNA helicase, DEAD/DEAH box family [Aurantimonas
manganoxydans SI85-9A1]
Length = 455
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 6/199 (3%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ FK G +D ++ +L R + +P+ IQA A P V++G+ + Q+G+GKT A+ L
Sbjct: 1 MTHTDFKAFGLADTLLSALARLDITQPTPIQAQAIPAVMKGRDVLGIAQTGTGKTAAFSL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
PVI L + + +P+V++L PT ELASQ+ N +S + G V+ GG
Sbjct: 61 PVIDAL----IAKGGRPAPKTPKVLVLTPTRELASQIAGNVKSYT-AGTKLTHHVIFGGV 115
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+E ++ GVD++IATPGR + L+ + L L + +LDE D + D F +
Sbjct: 116 SIRPQIEAMRRGVDIVIATPGRLLDLLNQRALTLSEVHHVVLDEADRML-DMGFVKDVMR 174
Query: 445 LISSSPVTAQYLFVTATLP 463
++S P Q L +AT+P
Sbjct: 175 IVSQLPADRQSLLFSATMP 193
>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 560
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 22/274 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +LG S+ + +++R + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 54 QNFADLGLSEAALAAVERLGYENPTPVQLQAIPLVLEGRDLIAAASTGTGKTAAFLLPIL 113
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K +PRV++++PT ELA Q+ C +++ + + V GG
Sbjct: 114 STLPR------GKRGKRAPRVLVVSPTRELAQQISQTCMQITRKTGHYVTTVF-GGTPYG 166
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ ++ G DVLIATPGR L+ +G++ L ++ +LDE D + D F A+ +++
Sbjct: 167 PQINEIRRGTDVLIATPGRLNDLMNKGVVDLGGIKSLVLDEADRML-DMGFLPAVTTIVD 225
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
++P Q L +AT+ I L + D VV + +E+F++
Sbjct: 226 ATPADRQTLLFSATIDHSIQKNLGSLLNDPAVVEIARNGETAQTVEQFMM---------- 275
Query: 508 TPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKKS 540
P F KK LLQ L+E+ + IVF K+
Sbjct: 276 -PIANF--KKPELLQALLEEKGSDRVIVFARTKN 306
>gi|291230496|ref|XP_002735194.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28-like
[Saccoglossus kowalevskii]
Length = 543
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/343 (28%), Positives = 162/343 (47%), Gaps = 34/343 (9%)
Query: 215 SDYNSRSNKHE---KSGTKIDRGW---RSGG---SIHNLQYEPTDCPKQRHKYSADGDFF 265
++Y+ N+H K +GW RS G +I+N + P PK+ + S +
Sbjct: 72 TEYSHYVNQHFNKFKPTRLASQGWKHSRSCGDHFTINNTRGNPA-FPKKSDQGSEHNE-- 128
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF + + +I L +P+ +Q + P V+ G + + A ++GSGKTL+YLLP
Sbjct: 129 SVTSFSDFHLHESLINGLASMEIEQPTNVQILTIPQVMRGHNVLCAAETGSGKTLSYLLP 188
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ +++ E + KS G PR ++L P ELA QVL+ R LSK + +V GG R
Sbjct: 189 MLHQMKTETEKLGMKSAVGLPRALVLLPARELAEQVLAVARRLSKF-TELSANIVEGGRR 247
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
KT +D+++ATPG + + G + + N+R ++DE+D + D+ F +L
Sbjct: 248 HKTLHSTSDSPLDLMVATPGALLKCVTSGWIHMDNVRYVVIDEIDTML-DDSFRTMTLNL 306
Query: 446 ISSSPV--------TAQYLFVTATLPVEIYNKLVEVFPDCKVVM--GPGMHRISPGLEEF 495
+ + AQ + + AT+P L V D +V +H + P + +
Sbjct: 307 LKRISIRHSADNTENAQVIMIGATMPKNAEEMLDNVVEDGSLVTVKTTHLHHLMPHIPQK 366
Query: 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538
+ ++ KT E + K K PV +VFCNK
Sbjct: 367 FIRIHSKDKAGKTLELVKRDVKC-------KIPV---VVFCNK 399
>gi|386815861|ref|ZP_10103079.1| ATP-dependent RNA helicase CsdA [Thiothrix nivea DSM 5205]
gi|386420437|gb|EIJ34272.1| ATP-dependent RNA helicase CsdA [Thiothrix nivea DSM 5205]
Length = 638
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 138/279 (49%), Gaps = 36/279 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++++++ + PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 10 AFSELGLAAPVLQAVQELGYETPSAIQAETIPYLLEGRDVLGQAQTGTGKTAAFALPLLS 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ST+G P+++ILAPT ELA QV C+ + F M + GG +T
Sbjct: 70 RL--------DLSTTG-PQILILAPTRELAIQVAEACQKYAAHLPGFHVMPIYGGQDYRT 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+ GV V++ TPGR M ++ L+L NL+ +LDE D + F ++ ++
Sbjct: 121 QFRQLERGVHVVVGTPGRVMDHLRRETLKLDNLQALVLDEADEMLR-MGFIEDIEWIMEQ 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS------PGLEEFLVD-CSG 501
+PVT Q +AT+P P +HRI+ P + V +
Sbjct: 180 TPVTRQIALFSATMP-------------------PAIHRIAQSYLNNPAEVKIQVKTTTA 220
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
D + + L+K AL +++E P I+F K+
Sbjct: 221 DTIRQRYWLVSGLHKLDALTRILEAEPFDACIIFVRTKT 259
>gi|421598599|ref|ZP_16041987.1| dead-box ATP-dependent RNA helicase, partial [Bradyrhizobium sp.
CCGE-LA001]
gi|404269295|gb|EJZ33587.1| dead-box ATP-dependent RNA helicase, partial [Bradyrhizobium sp.
CCGE-LA001]
Length = 359
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 147/271 (54%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L+ +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLAEPIARALREENYVTPTPIQAQTVPLALTGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P+ Q LF +AT+P +I + D P ++P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRD------PARVAVTP------VSSTAERINQRI 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ F K S L +L+++ PV++ +VF K
Sbjct: 225 IQVDFSAKPSFLARLLKEEPVNRALVFTRTK 255
>gi|374572806|ref|ZP_09645902.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374421127|gb|EHR00660.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 505
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 144/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 183 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIQQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ F K + L QL+++ V++ +VF K
Sbjct: 230 IIQVDFSAKPAFLAQLLKQEQVNRALVFTRTK 261
>gi|257056836|ref|YP_003134668.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256586708|gb|ACU97841.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 570
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 139/278 (50%), Gaps = 25/278 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++++L + P+ IQ A PP+++G + +G+GKT A+ LPV+ R
Sbjct: 18 FSELGLRPELLQALAELGYEEPTPIQRAAIPPLLDGCDVVGQAATGTGKTAAFALPVLHR 77
Query: 330 LRQEEL--QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFR 385
+R E +G +P V+L PT ELA+QV C ++ + G + R + V GG
Sbjct: 78 IRDGERGERGARAQRGAAPSAVVLVPTRELAAQV---CEAMRRYGRRLGVRVLPVYGGQS 134
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
QL L+EGVDV++ATPGR + + G L L LR +LDE D + D F + ++
Sbjct: 135 MSRQLRALEEGVDVVVATPGRALDHLSRGSLDLSALRMVVLDEADEML-DMGFAEDIDTI 193
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q + +AT+P I + D + RI E L D ++
Sbjct: 194 LERTPDDRQTMLFSATMPPRIAGLVRRYLRDPR--------RIELSRAESL-----DGDA 240
Query: 506 DKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
+TA++ +K +AL ++++ T+VFC +
Sbjct: 241 ASITQTAYVVPRGHKPAALGRVLDIETPEATVVFCRTR 278
>gi|226330865|ref|ZP_03806383.1| hypothetical protein PROPEN_04786 [Proteus penneri ATCC 35198]
gi|225201660|gb|EEG84014.1| DEAD/DEAH box helicase [Proteus penneri ATCC 35198]
Length = 475
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPILEK 63
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q +K+ P + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 64 LSQSA----TKTKGRQPVKALILTPTRELAAQIAENVKAYSRY-IPIRSLVVFGGVSINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + + L + +LDE D + D F ++ +I+
Sbjct: 119 QMMKLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRML-DMGFIHDIRRVINK 177
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 178 LPKKRQNLLFSATFSKEI 195
>gi|357977206|ref|ZP_09141177.1| DEAD/DEAH box helicase [Sphingomonas sp. KC8]
Length = 465
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 132/272 (48%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + P+ IQ A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLRAIADSGYSEPTPIQEQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 62 ILAH------GRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGTNMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIAALEKGVDVLIATPGRLMDLFQRGKILLTGCSLLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + K + + + +E+FLV+CS
Sbjct: 174 LPAQRQTLLFSATMPAPIKKLADRFLTNPKQIEVARVGAANASIEQFLVECSSR------ 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ L L+ + I+F N+K+
Sbjct: 228 ------GKRDVLRDLLRAEDMHTAIIFSNRKT 253
>gi|312373567|gb|EFR21282.1| hypothetical protein AND_17289 [Anopheles darlingi]
Length = 744
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 152/336 (45%), Gaps = 42/336 (12%)
Query: 231 IDRGWRSGGSIHNLQYEPTDCPK------------------------QRHKYSADGDFFS 266
DR ++G ++ N+++EP D +H+ + G
Sbjct: 55 FDRQSQNGKNLRNIKWEPQDLTPFEKNFYQPSATLVGLSETEIEGYLNKHQITLKGREVP 114
Query: 267 RKS--FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
R S F++ G Y++E LKRQ F +P+ IQA P + G+ + Q+GSGKTLAY++
Sbjct: 115 RPSMDFEDGGLPSYIMEELKRQGFSKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVV 174
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P + ++ +E S P +ILAPT ELA Q+ V + V GG
Sbjct: 175 PSLVHIQHQE----SIRRGDGPIALILAPTRELAQQIQQVATDFGSR-VSANNTCVFGGA 229
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+ +L+ G +++IATPGR + ++ GI L +LDE D + D FE ++
Sbjct: 230 PKGPQIRDLERGAEIVIATPGRLIDFLERGITNLKRCTYLVLDEADRML-DMGFEPQIRK 288
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQ 503
++ Q L +AT P E+ +L E F + + G +S +VD D
Sbjct: 289 IMGQIRPDRQVLMWSATWPKEV-RQLAEEFLADYIQINIGSLNLSANHNILQIVDVCEDY 347
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D+ K LL I P +KTI+F K
Sbjct: 348 EKDQ--------KLMKLLTEISAEPDTKTIIFVETK 375
>gi|404252844|ref|ZP_10956812.1| putative helicase [Sphingomonas sp. PAMC 26621]
Length = 492
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 139/275 (50%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P ++ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P ++ ++++LV
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLDNPKTIEVARPATANVN--IKQWLV-------- 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
P TA K+ L++L+ V I+F N+K+
Sbjct: 223 ---PVTA-AKKRDTLMKLLRSEDVQTGIIFSNRKT 253
>gi|254417807|ref|ZP_05031531.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196183984|gb|EDX78960.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 510
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ +G + ++++L + + +P+ IQ A P V++GK + Q+G+GKT A+ LP++
Sbjct: 17 TFESMGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++T RV++L+PT ELA+Q+ + ++ + FR V+ GG +
Sbjct: 77 RLAENRIAPKPRTT----RVLVLSPTRELATQIGDSFKAYG-AHLGFRVAVIFGGVKYGA 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q LQ+G+D+L+A PGR + I++ L L + +LDE D + D F ++ ++S
Sbjct: 132 QERALQQGLDILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQML-DLGFIKPIRQIVSR 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP 483
P Q LF +AT+P EI E+ D KV + P
Sbjct: 191 IPAKRQNLFFSATMPTEIGKLAGELLKDPVKVQVTP 226
>gi|340776541|ref|ZP_08696484.1| ATP-dependent RNA helicase [Acetobacter aceti NBRC 14818]
Length = 431
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 148/277 (53%), Gaps = 27/277 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L S ++ +L + +++P+ IQA + P ++EG+ + Q+G+GKT +++LP++
Sbjct: 4 TFEDLALSPALLRALGEEGYVKPTPIQAQSIPLLLEGRDLLGMAQTGTGKTASFVLPLLH 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G RV++LAPT EL SQ+ S + + FR + GG Q
Sbjct: 64 RLAETP----RPAPKGGARVLVLAPTRELVSQIADGFESFGRH-LDFRVTTIFGGVSQFH 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+EGVDV++A PGR + LI++G+ L L +LDE D + D F ++ ++++
Sbjct: 119 QVNALKEGVDVIVAAPGRLLDLIEQGLCDLSELEAVVLDEADQML-DMGFAKPIERIVAT 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQE 504
P + +AT+P I + + D KV + P + RI + +D +
Sbjct: 178 LPKDRHTVLFSATMPKSIAALVDSLLNDPAKVEIAPPSTTVDRIEQSV--MFMDAA---- 231
Query: 505 SDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKKS 540
+KK+ALL ++++P + + +VF +K+
Sbjct: 232 ----------HKKTALLAQLQQTPDMGQAVVFTLQKN 258
>gi|254421014|ref|ZP_05034738.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
gi|196187191|gb|EDX82167.1| DEAD/DEAH box helicase domain protein [Brevundimonas sp. BAL3]
Length = 545
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 134/271 (49%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQ A P + G+ + Q+G+GKT A+ LP+++R
Sbjct: 4 FSQLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPLVER 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR ++LAPT ELA QV + +K G +++ GG Q
Sbjct: 64 L------ASGRARARMPRAIVLAPTRELADQVAESFAKYAK-GTKLTWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L + G + L + ++DE D + D F ++ + +
Sbjct: 117 VAALNKGVDVLIATPGRLLDLFERGKMLLTGVEIMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI D + + + +++V + P
Sbjct: 176 PPRRQTLFFSATMPPEITRLTAAFLKDPTRIEASRPAMTADTITQYIV---------RIP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K++AL L+ ++ V IVFCN+KS
Sbjct: 227 TSDPKAKRAALRALMSRTDVRNGIVFCNRKS 257
>gi|167646708|ref|YP_001684371.1| DEAD/DEAH box helicase [Caulobacter sp. K31]
gi|167349138|gb|ABZ71873.1| DEAD/DEAH box helicase domain protein [Caulobacter sp. K31]
Length = 678
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 135/271 (49%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I +
Sbjct: 4 FSELGLSPTTLQAVADTGYTTATPIQAAAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G +K+ PR +++APT ELA QV S+ +K G ++ GG Q
Sbjct: 64 L----MNGRAKAR--MPRALVIAPTRELADQVASSFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + +V K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLKDPVRIEASRPATTNENITQLMV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K+ AL LIEK+ + IVFCN+K+
Sbjct: 227 SSDPKAKRLALRALIEKAQIETGIVFCNRKT 257
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 138/275 (50%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L S S SP R +IL PT ELA QV N ++ S+ P RS VV GG
Sbjct: 78 LLAH------ASHSASPARHPVRALILTPTRELADQVAENVKAYSRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V + + R + E +E
Sbjct: 190 IINLLPKQRQNLLFSATFSPEI-KKLAASFQNNPVTI--EVARSNATAENVSQTIYKVEE 246
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K +F+ ++ L Q+ IVF N K
Sbjct: 247 AAKADAVSFIIRQRELKQV---------IVFSNTK 272
>gi|417948797|ref|ZP_12591939.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809160|gb|EGU44284.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 423
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 112/206 (54%), Gaps = 14/206 (6%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG SD+++ +L+ NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSDHLLATLEELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL L+ + P R ++L PT ELA QV N S +K G + +V
Sbjct: 64 IIQRL-------LATKDNVIPNPKLVRALVLVPTRELAQQVFDNVSSYAK-GTDLKVVVA 115
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG K Q +NL++G D+L+ATPGR + + + L +LDE D + D F
Sbjct: 116 YGGVSMKVQTDNLRQGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRML-DMGFMP 174
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEI 466
++ ++S Q LF +AT +I
Sbjct: 175 DIKRILSRMNDVRQTLFFSATFDNKI 200
>gi|366991885|ref|XP_003675708.1| hypothetical protein NCAS_0C03530 [Naumovozyma castellii CBS 4309]
gi|342301573|emb|CCC69343.1| hypothetical protein NCAS_0C03530 [Naumovozyma castellii CBS 4309]
Length = 977
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 133/261 (50%), Gaps = 18/261 (6%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + T+ K +HK + SF G S ++I ++ R+ F +P+ IQ P +
Sbjct: 109 NAYFSTTNLDKSKHK---------KGSFPSFGLSKFIISNITRKGFRQPTPIQRKTIPLI 159
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP+I++L+ + S R VIL+P+ ELA Q
Sbjct: 160 LQNRDIVGMARTGSGKTAAFILPMIEKLK-------THSGKIGARAVILSPSRELAMQTH 212
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + SK G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 213 NVFKDFSK-GTQLRSVLLTGGDSLEDQFGMMMNNPDVIIATPGRFLHLKVEMNLDLKSIE 271
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
A+ DE D LF + F+ L L++S P + Q L +ATLP + + + +V
Sbjct: 272 YAVFDEADRLF-EMGFQEQLNELLASLPSSRQTLLFSATLPSSLVDFAKAGLTNPVLVRL 330
Query: 483 PGMHRISPGLEEFLVDCSGDQ 503
+IS LE + D+
Sbjct: 331 DAETKISENLEMLFLSTKNDE 351
>gi|395492457|ref|ZP_10424036.1| putative helicase [Sphingomonas sp. PAMC 26617]
Length = 492
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 139/275 (50%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD + ++ + P+ IQA A P ++ GK + Q+G+GKT A++LP+I
Sbjct: 2 TFADLGLSDELQRAVNESGYTEPTPIQASAIPSILMGKDLVAVAQTGTGKTAAFVLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ G +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 61 -----DILGEGRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVSMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QTAALEKGVDVLIATPGRLMDLFGRGKILLTGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q L +AT+P I KL + F P V P ++ ++++LV
Sbjct: 174 LPKTRQTLLFSATMPPPI-KKLADKFLDNPKTIEVARPATANVN--IKQWLV-------- 222
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
P TA K+ L++L+ V I+F N+K+
Sbjct: 223 ---PVTA-AKKRDTLMKLLRSEDVQTGIIFSNRKT 253
>gi|456358119|dbj|BAM92564.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain,
RhlE protein [Agromonas oligotrophica S58]
Length = 471
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 143/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ +D + +LK +N+ P+ IQA P ++G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFNLADALTRALKEENYTTPTPIQAQTIPIALQGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTA----RVLVLSPTRELSGQILDSFNTYGRH-IRLSSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + G++VL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QVRAVMPGLEVLVATPGRLLDLVQGNALKLSHVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTVERIAQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L QL+++ PV++ +VF K
Sbjct: 224 VIQVDHSAKPNLLAQLLKQEPVNRALVFTRTK 255
>gi|429330588|ref|ZP_19211374.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
gi|428764698|gb|EKX86827.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida CSV86]
Length = 441
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 117/198 (59%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L N+ P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAKLGLIEPLLRALDGLNYNTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G ++ + S R ++L PT ELA QV +N R ++ +P R+ V GG
Sbjct: 62 RL---TLEG-AQVAANSVRALVLVPTRELAEQVHANIREYAEH-LPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+D+L+ATPGR + L ++ ++ L+ +LDE D + D F L+S+ ++
Sbjct: 117 QMMKLRKGIDLLVATPGRLLDLFRQNAVKFNQLQALVLDEADRML-DLGFAEELRSIYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
PV Q L +AT EI
Sbjct: 176 LPVKRQTLLFSATFSDEI 193
>gi|410462897|ref|ZP_11316448.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983996|gb|EKO40334.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 501
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 25/273 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF D +I ++KR + P+ IQA A P V+EG+ + Q+G+GKT A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGRDLMGLAQTGTGKTAAFLLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + SPR +ILAPT ELA Q+ + + G R+ V+ GG
Sbjct: 62 RLL------TTPARTRSPRTLILAPTRELAEQIFRSTLDFMR-GTRLRATVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDV++A PGR + + +G ++ L +LDE D +F D F ++ ++++
Sbjct: 115 QVRALRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMF-DMGFLPDIKRILAA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQESD 506
P Q L +AT+P I E D V + ++P +E + S +Q
Sbjct: 174 LPAKRQTLLFSATMPPAISGLAGETLTDPVTVR---IGHLAPLSTVEHAIYPVSHNQ--- 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K LL L+ ++ IVF K
Sbjct: 228 ---------KAPLLLHLLGEAGKESVIVFTRTK 251
>gi|389722095|ref|ZP_10188778.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
gi|388443987|gb|EIM00117.1| ATP-dependent RNA helicase [Rhodanobacter sp. 115]
Length = 437
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG ++ +L Q + P+ IQA A P V+ G + A Q+G+GKT A+ LP++Q
Sbjct: 2 SFESLGLVPTLLRALAEQGYAEPTPIQAAAIPEVLAGHDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +T PRV+IL PT ELA+Q+ N R+ +K + RS V+ GG
Sbjct: 62 RLIDA-----PAATPRRPRVLILTPTRELAAQIDDNLRAYAKY-LHVRSAVIFGGVGMGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDV+IATPGR + +++ ++L + +LDE D + D F AL+ ++++
Sbjct: 116 QINALRRGVDVVIATPGRLIDHMQQRNIELSGVDVLVLDEADRML-DMGFLPALKRILTA 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT I
Sbjct: 175 VPKQRQTLLFSATFAAPI 192
>gi|89890308|ref|ZP_01201818.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
gi|89517223|gb|EAS19880.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
Length = 425
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 141/273 (51%), Gaps = 22/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKELG + ++ +L+ Q + P+ IQA + P +++GK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKELGLVEPILRALQDQGYENPTPIQAQSIPVLLKGKDLLGVAQTGTGKTAAFSIPILQ 61
Query: 329 RLRQEELQGLSKSTSG--SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L S G S + +++ PT ELA Q+ N ++ +K R+ V+ GG +Q
Sbjct: 62 HLYN------SAPPKGRRSIKALVVTPTRELAIQIDENFKAYAKY-TDIRNTVIYGGVKQ 114
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ G+DVL+ATPGR + LI +G + L ++ +LDE D + D F ++ L+
Sbjct: 115 AQQVNRLKSGIDVLVATPGRLLDLINQGFITLKHIEYFVLDEADQML-DMGFIHDIKKLL 173
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+P I ++ D + V I+P + ++
Sbjct: 174 KLLPHERQSLFFSATMPKTIVELSRQILGDFERVT------IAPE------KTTAEKVEQ 221
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ NK L++L+E + T+VF K
Sbjct: 222 QIYHVNKKNKTKLLIELLETKLLDSTLVFSRTK 254
>gi|302384214|ref|YP_003820037.1| DEAD/DEAH box helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302194842|gb|ADL02414.1| DEAD/DEAH box helicase domain protein [Brevundimonas subvibrioides
ATCC 15264]
Length = 528
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ G + ++++L + + P+ IQA A P V+ GK + Q+G+GKT A+ LP++
Sbjct: 16 TFESFGLNKALLQALTTEGYTVPTPIQAQAIPSVMLGKDLLGIAQTGTGKTAAFALPILH 75
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + L ++T R +IL+PT ELASQ+ + ++ + + F+ VV GG +
Sbjct: 76 RLAENRVAPLPRTT----RCLILSPTRELASQIADSFKAYGRH-LGFKVAVVFGGVKYGP 130
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +Q G+DVL+ATPGR + +++ L L + +LDE D + D F ++ ++S
Sbjct: 131 QERAIQAGLDVLVATPGRLLDHMQQKTLDLSSTEIFVLDEADQML-DLGFVKPIRQIVSR 189
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 190 IPAKRQNLFFSATMPTEI 207
>gi|332652507|ref|ZP_08418252.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
D16]
gi|332517653|gb|EGJ47256.1| putative ATP-dependent RNA helicase RhlE [Ruminococcaceae bacterium
D16]
Length = 628
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 10/199 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG ++ +LK + + +PS IQ A PP + G+ + Q+G+GKT A+ P++Q
Sbjct: 2 TFEDLGLCPQILAALKEEGYEKPSPIQEQAIPPALAGRDVLGCAQTGTGKTCAFAAPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL +K SG P R +IL PT ELA Q+ + + + R V+ GG Q
Sbjct: 62 RLS-------NKPASGHPIRALILTPTRELAIQIGESFEHYGR-HLALRCAVIFGGVGQA 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+E L +GVD+L+ATPGR L ++G + L +L +LDE D + D F ++ ++
Sbjct: 114 PQVEKLGKGVDILVATPGRLGDLYQQGFIHLNDLEIFVLDEADRML-DMGFIHDVKKILK 172
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 173 WLPEKKQTLFFSATMPKEI 191
>gi|299132277|ref|ZP_07025472.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
gi|298592414|gb|EFI52614.1| DEAD/DEAH box helicase domain protein [Afipia sp. 1NLS2]
Length = 509
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 143/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L+ +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALREENYVTPTPIQAQTIPIAITGRDVVGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 63 RLLENRVRPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-LRLSAALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + +GV+VL+ATPGR + L++ ++L + +LDE D + D F ++ +++
Sbjct: 118 QVRAMMQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
PV Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 177 LPVKRQTLFFSATMPKDIAELAEHMLRDPARVAVTP-------------VSSTAERITQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L +L++ PV++ +VF K
Sbjct: 224 IIQLDHSAKPATLSELLKSEPVNRALVFTRTK 255
>gi|373955865|ref|ZP_09615825.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
gi|373892465|gb|EHQ28362.1| DEAD/DEAH box helicase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 428
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 144/271 (53%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ L + ++++LK + + P+ IQ + P ++E K + Q+G+GKT A+ +P++Q
Sbjct: 2 SFENLKLIEPILKALKHEGYTNPTPIQEQSIPIILERKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L QE++Q ++ G + +IL PT ELA Q+ + + K + +V+ GG Q
Sbjct: 62 ILYQEKVQ--NRDHKGI-KTLILTPTRELAIQIDESFAAYGKH-TGLKHLVIFGGVSQHH 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVD+L+ATPGR + L+++ + L +L+ +LDE D + D F ++ +I+
Sbjct: 118 QVEALKRGVDILVATPGRLLDLVQQKFVHLESLKILVLDEADRML-DMGFVNDVKKIIAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
PV Q LF +AT+P EI + D ++ P ++P V + D
Sbjct: 177 IPVKRQTLFFSATMPKEI-----QTLADT-ILNKPEKVEVTP------VSSTADTIQQGI 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+KKS L+ +++ + +VF K
Sbjct: 225 YFVDKNDKKSLLIHILKDKKIETALVFTRTK 255
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 134/271 (49%), Gaps = 15/271 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ + P+ IQA A P V+ G+ + A Q+G+GKT A+ LP+I
Sbjct: 3 TFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPIIA 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLR +S + R +IL PT ELA Q+ ++ +S +K +P R V GG
Sbjct: 63 RLRHYATHSVSPAMHPV-RCLILTPTRELADQIAASVQSYTKY-LPLRHTCVFGGVNMDP 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L G+D+++ATPGR + +++ +QL + +LDE D + D F + ++ +++
Sbjct: 121 QKADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADRML-DMGFILDIRRILAQ 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q L +AT EI E D + + + +E+ + Q
Sbjct: 180 LPKTRQTLLFSATFSPEIKKLAAEFQRDPVTIEVARQNTTAATVEQAVYAVDAGQ----- 234
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +LI + +S+ IVFC K
Sbjct: 235 -------KRRLLARLINERAMSQVIVFCRTK 258
>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 471
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 144/278 (51%), Gaps = 33/278 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L +I++L+++++L P+ IQ A P ++ G+ + Q+G+GKT A+ +P IQ
Sbjct: 3 FKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR+E+ S + R +I+ PT ELA Q+ + + K + VV GG QK Q
Sbjct: 63 LREEK---ESHGAKQNIRALIVTPTRELALQIYESFNTYGKF-TDLKCCVVFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L++ VD+L+ATPGR + LI + I+ + +++ ILDE D + D F ++ +I+ +
Sbjct: 119 EEKLKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRML-DMGFIHDVKKIIART 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--------GLEEFLVDCSG 501
P+ Q L +AT+P +I KL ++ P I+P G + VD S
Sbjct: 178 PLKKQTLLFSATMPPDI-AKLAGT-----ILKAPAKIEITPVSSTVDTIGQYVYFVDKS- 230
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NKK LL +++ + + +VF K
Sbjct: 231 -------------NKKDLLLHVLKDNNIVSALVFTRTK 255
>gi|410943326|ref|ZP_11375067.1| ATP-dependent RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 386
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 117/195 (60%), Gaps = 10/195 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 15 FAAFGLIPPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 74
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E ++ PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 75 LSKGE-------SAHGPRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 126
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ +GVD+++AT GR + L+ +G L L L +LDE D L DEDF ++ +L
Sbjct: 127 VRSIVDGVDIVVATHGRLLDLVMQGDLVLEYLSYLVLDEADRLL-DEDFSESMTALTPYF 185
Query: 450 P-VTAQYLFVTATLP 463
P V Q +F +ATLP
Sbjct: 186 PDVPPQTVFCSATLP 200
>gi|289724644|gb|ADD18300.1| ATP-dependent RNA helicase [Glossina morsitans morsitans]
Length = 652
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 18/272 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F E G DY++ +K+ F +P+ IQA +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 120 FNEGGFPDYVMTGIKKLGFAKPTAIQAQGWPIALSGRDMVGVAQTGSGKTLAYVLPAVVH 179
Query: 330 L-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ Q L+ S P +ILAPT ELA Q+ + R+ + GG ++
Sbjct: 180 INNQPRLE-----HSDGPIALILAPTRELAQQIQQVANEFG-SQIQVRNTCIFGGAPKQP 233
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L+ GV+++IATPGR + ++ G+ L +LDE D + D FE ++ +I
Sbjct: 234 QSRDLERGVEIVIATPGRLIDFLERGVTNLRRCTYLVLDEADRML-DMGFEPQIRKIIKQ 292
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F D + + G +S +VD +E++K
Sbjct: 293 IRPDRQVLMWSATWPKEVRN-LAEEFLDNYIQINIGSLTLSANHNILQIVDVC--EEAEK 349
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T NK + LL I +KTI+F K
Sbjct: 350 T------NKLNKLLGEISSEKDTKTIIFVETK 375
>gi|398820506|ref|ZP_10579026.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
gi|398228828|gb|EJN14930.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
Length = 524
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 143/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQDFGLAEPIARALAEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RLLENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVL+ATPGR + L++ L+L ++ +LDE D + D F ++ +++
Sbjct: 132 QVRALMPGVDVLVATPGRLLDLVQSNGLKLGSVEFLVLDEADRML-DMGFINDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + D +V + P V + ++ + +
Sbjct: 191 LPIRRQTLFFSATMPKDIAELADAMLRDPARVAVTP-------------VSSTAERINQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ F K + L +L+++ V++ +VF K
Sbjct: 238 IIQVDFSAKPAFLAKLLKQEQVNRALVFTRTK 269
>gi|83310484|ref|YP_420748.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945325|dbj|BAE50189.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 583
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 140/280 (50%), Gaps = 20/280 (7%)
Query: 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
+DG + +F++LG ++++L + P+ IQA A P V+ G+ + Q+G+GKT
Sbjct: 30 SDGPETATTTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKT 89
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
++ LP+I E+ ++ + PR +ILAPT ELA+QV N K P + +
Sbjct: 90 ASFTLPMI------EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYH-PLKKAL 142
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
+ GG Q+ L GVDVLIATPGR + + + G + L +++ ++DE D + D F
Sbjct: 143 IIGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRML-DMGFI 201
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
++ ++ P Q LF +AT+ EI +L + F +M P ++S G
Sbjct: 202 PDVEKIVGLLPKIRQTLFFSATMGPEI-RRLADAF-----LMNPKEVKVSTGASAATTVV 255
Query: 500 SGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++ ++K+ L LI V +FCN+K
Sbjct: 256 QALAVVEE------IDKRETLRHLIRIEEVKNAFIFCNRK 289
>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
Length = 410
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 141/272 (51%), Gaps = 21/272 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL ++++L+++N+ P+ IQ A PP++ G+ + Q+G+GKT A+ +P +Q
Sbjct: 3 FKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ G ++ + R +++ PT ELA Q+ N + K +P + V+ GG QK Q
Sbjct: 63 LHKD---GAPRAGRRNIRALVITPTRELALQIYENFCAYGKY-LPLKCAVIFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
LQ+GVD+L+ATPGR L+++ ++ L N+ ILDE D + D F ++ +I+ +
Sbjct: 119 EAALQKGVDILVATPGRLNDLMQQKLIDLKNVELLILDEADRML-DMGFIHDVKKIIAKT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRI-SPGLEEFLVDCSGDQESDK 507
P Q L +AT+P I + + KV + P + + G + VD
Sbjct: 178 PSQRQTLLFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKG------- 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ L+ L++ + IVF K
Sbjct: 231 -------NKRDLLIHLLKDPSIESAIVFTRTK 255
>gi|399546760|ref|YP_006560068.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
gi|399162092|gb|AFP32655.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
Length = 444
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT ++LP++Q
Sbjct: 2 SFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + T PRV+IL PT ELA+QV + S+ VP R+ VV GG +
Sbjct: 62 MLEQ------NPRTGKGPRVLILTPTRELAAQVHDSVNLYSRY-VPTRAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDEADRML-DMGFIRDIRKILAM 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LPAKRQSLLFSATFSNEI 191
>gi|348681955|gb|EGZ21771.1| hypothetical protein PHYSODRAFT_350808 [Phytophthora sojae]
Length = 491
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 141/293 (48%), Gaps = 30/293 (10%)
Query: 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323
FF+ +SF++LG ++ L+ P+ IQ+ + P ++E + A Q+G+GKTLAYL
Sbjct: 30 FFAAQSFQDLGVDARIVAGLREMKITTPTGIQSKSIPAILERHDVLCAAQTGTGKTLAYL 89
Query: 324 LPVIQRLRQEE-----------LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG 372
+PV+++L ++E L G ++ G PR ++L P+ ELA QV S + LS
Sbjct: 90 VPVVEQLLRKEAAMQKEHEAKGLTGPAEVVLGRPRALVLLPSRELALQVASVAKQLSHSA 149
Query: 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432
F S +T G R+ Q N +D++I TPGR I +G + + ++DE D L
Sbjct: 150 -KFASCTITSGERKSIQQRNTARRLDLIIGTPGRVAKCISKGDFFVSRIDTVVVDEADTL 208
Query: 433 FNDE-DFEVALQSLISSSPVTA-------QYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
F+ + F L +++ +A Q + AT+ I L + F + +VV
Sbjct: 209 FDAKMGFRKELDAVLGPIQASAAKRNQPLQMVLAAATIRSPIDQVLKKKFGELRVVSDDK 268
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
+H+ + E V + + E L+K+ A +KT+VFC
Sbjct: 269 IHKTPTTIREEFVRVVPESKHSALREALHLHKRRA----------AKTMVFCR 311
>gi|348618050|ref|ZP_08884583.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816755|emb|CCD29246.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 427
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 138/279 (49%), Gaps = 19/279 (6%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D FS F G D +++S+ Q + P+ IQ A P + G+ + A Q+G+GKT +
Sbjct: 3 DIFSH--FSHFGLHDDLLKSIAEQGYAVPTPIQVHAIPAALAGRDVMGAAQTGTGKTAGF 60
Query: 323 LLPVIQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
LP++QRL L S S + P R +IL PT ELA QV +N R+ ++ + RS+ V
Sbjct: 61 SLPILQRLL--PLANASVSPARHPVRALILTPTRELADQVAANIRAYAQYTL-LRSLAVF 117
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG K Q L+ GV++L+ATPGR + +++ LQL +LDE D + D F
Sbjct: 118 GGVDMKAQAGELRRGVEILVATPGRLLDHLEQKNLQLGQTGILVLDEADRML-DMGFLPD 176
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
LQ ++++ P Q L +AT EI N D + + + + + + +
Sbjct: 177 LQKILAALPRERQTLLFSATFSDEIRNLAAYYLNDPVSIEIETRNATAVNVRQLVYEID- 235
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
E+DK A +LI + + I+FCN KS
Sbjct: 236 --ENDKADAAA---------RLIRLRGLKQVIIFCNSKS 263
>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
Length = 444
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT ++LP++Q
Sbjct: 2 SFSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + T PRV+IL PT ELA+QV + S+ VP R+ VV GG +
Sbjct: 62 MLEQ------NPRTGKGPRVLILTPTRELAAQVHDSVNLYSRY-VPTRAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEFLVLDEADRML-DMGFIRDIRKILAM 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LPAKRQSLLFSATFSNEI 191
>gi|334142403|ref|YP_004535611.1| DEAD/DEAH box helicase [Novosphingobium sp. PP1Y]
gi|359401233|ref|ZP_09194203.1| DEAD/DEAH box helicase-like protein [Novosphingobium
pentaromativorans US6-1]
gi|333940435|emb|CCA93793.1| DEAD/DEAH box helicase-like [Novosphingobium sp. PP1Y]
gi|357597304|gb|EHJ59052.1| DEAD/DEAH box helicase-like protein [Novosphingobium
pentaromativorans US6-1]
Length = 462
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 134/275 (48%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S+ ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 NFADLGLSEELLQAVEAAGYTEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K + ++ GG +
Sbjct: 62 ILAHGRRRAL------MPRSLILEPTRELAAQVAENFEKYGKNH-DLKMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L EGVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 115 QVKALTEGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRML-DMGFIPDIENICSK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q + +AT+P I KL + F P V P I+ + V
Sbjct: 174 LPTNRQTMLFSATMPPPI-KKLSDRFLSNPKYIEVARPATANINIVQHKVAVTAR----- 227
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ L L+ VS IVFCN+K+
Sbjct: 228 ---------KKREVLRHLLRTDNVSTAIVFCNRKT 253
>gi|319938171|ref|ZP_08012569.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
gi|319806692|gb|EFW03341.1| ATP-dependent RNA helicase RhlE [Coprobacillus sp. 29_1]
Length = 437
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 147/274 (53%), Gaps = 25/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + + ++++ N+ + IQ A P ++EG+ + ++G+GKT A+ LP++Q+
Sbjct: 3 FKELKLIEPLQMAIEKLNYTEATPIQEQAIPLLLEGRDLLGCAKTGTGKTAAFALPILQK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ S+ + + +ILAPT ELA Q+ +S++ V +S V+ GG RQ +Q
Sbjct: 63 LY---LRDESEKYPRTIKALILAPTRELAMQIDETFQSMNSF-VNLKSTVIFGGVRQGSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ G+DVLIATPGR L K+G+L L ++ +LDE D + D F ++ ++
Sbjct: 119 VTKIERGIDVLIATPGRLSDLYKQGLLDLSHIEYFVLDEADRML-DMGFINDIRRIMKYI 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPG---MHRISPGLEEFLVDCSGDQES 505
P Q + +ATLP EI + + E+ + KV++ G + RI L + VD +
Sbjct: 178 PKQRQTMLFSATLPKEIQHLIDEILNNPEKVMVSSGQMTVERIQQSL--YYVDKA----- 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK L++L+E + IVF K
Sbjct: 231 ---------NKAKLLIKLLENPQIYNAIVFVRTK 255
>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
Length = 496
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 25/273 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF D +I ++KR + P+ IQA A P V+EG + Q+G+GKT A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + SPR +ILAPT ELA Q+ + + G R+ V+ GG
Sbjct: 62 RLI------TNPARTRSPRTLILAPTRELAEQIFRSTLDFMR-GTRLRATVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDV++A PGR + + +G ++ L +LDE D +F D F ++ ++++
Sbjct: 115 QVRALRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMF-DMGFLPDIKRILAA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQESD 506
P Q L +AT+P I E D V + ++P +E + S +Q
Sbjct: 174 LPAKRQTLLFSATMPPAISGLAAETLTDPVTVR---IGHLAPLSTVEHAIYPVSHNQ--- 227
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K LL L+ ++ IVF K
Sbjct: 228 ---------KAPLLLHLLGEAGKESVIVFTRTK 251
>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 466
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 5/197 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + + PS IQA A P V+ G+ + A Q+G+GKT + LP++QR
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + +K +S + R +IL PT ELA+Q+ + K + SMVV GG + Q
Sbjct: 68 LSSSK---GNKVSSNNVRALILTPTRELAAQISESIEVYGKY-LNLHSMVVFGGVKINPQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++GVDVL+ATPGR + L + ++ L ILDE D + D F ++ L+++
Sbjct: 124 IARLRQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRML-DMGFIRDIKKLMTAL 182
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 183 PKDRQNLLFSATFSPEI 199
>gi|163786067|ref|ZP_02180515.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
gi|159877927|gb|EDP71983.1| putative ATP-dependent RNA helicase RhlE [Flavobacteriales
bacterium ALC-1]
Length = 436
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 114/198 (57%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S+ ++ ++ ++ + PS IQA A PPV+E K + + Q+G+GKT + LP++
Sbjct: 2 SFKSLGLSEPLLRAISKKGYETPSPIQAKAIPPVLEEKDVLASAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q +Q R +IL PT ELA+QV +N + S+ + +S V+ GG QK
Sbjct: 62 LLSQRPVQ-----KHRPIRALILTPTRELAAQVHTNVKEYSEF-LNIKSTVIFGGVNQKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++GVDVL+ATPGR + L +G+L L + +LDE D + D F ++ ++
Sbjct: 116 QVATIRKGVDVLVATPGRLIDLESQGLLSLKRVEIFVLDEADRML-DMGFLRDIERVMKL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 MPDKRQNLMFSATFSKDI 192
>gi|420155719|ref|ZP_14662575.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
gi|394758696|gb|EJF41558.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
Length = 595
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 145/275 (52%), Gaps = 24/275 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL ++++L+ + + PS IQ A PP + G+ + Q+G+GKT A+ +P++Q
Sbjct: 2 NFQELNLIAPILKALQEEQYEAPSPIQEKAIPPALLGRDVLGCAQTGTGKTAAFAVPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K + R +IL PT ELA Q+ + R+ + +P RS V+ GG Q
Sbjct: 62 TLNAQP--PVPKGQKRAIRSLILTPTRELAIQIGESLRAYGRY-LPLRSEVIFGGVSQVP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L GVD+L+ATPGR LI++G + L ++ +LDE D + D F ++ +I+
Sbjct: 119 QVNSLNRGVDILVATPGRLNDLIQQGFIDLGAVQIFVLDEADRML-DMGFIHDVKRVITR 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEE--FLVDCSGDQE 504
P Q LF +AT+P EI +LV+ + KV + P + + +E+ + VD
Sbjct: 178 LPKQKQTLFFSATMPPEI-TELVDSLLVEPIKVAVAP-VSSTADAIEQSVYFVDKG---- 231
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK L+ L++ S + +VF K
Sbjct: 232 ----------NKPKLLIDLLKHSEIESALVFTRTK 256
>gi|453331172|dbj|GAC86751.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 417
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 117/195 (60%), Gaps = 10/195 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 46 FAAFGLISPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E S G PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 106 LSKGE------SVHG-PRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 157
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ +GVD+++AT GR + L+ +G L L L +LDE D L DEDF ++ +L
Sbjct: 158 VRSIVDGVDIVVATHGRLLDLVTQGELVLEYLTYLVLDEADRLL-DEDFSESMTALTPYF 216
Query: 450 P-VTAQYLFVTATLP 463
P V Q +F +ATLP
Sbjct: 217 PDVPPQTVFCSATLP 231
>gi|412989029|emb|CCO15620.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 150/286 (52%), Gaps = 30/286 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPV 326
SF +L + E+L+ N P++IQ++A P + + G CI A +GSGKTLAYLLP+
Sbjct: 79 SFDDLSAD--VREALENLNLQSPTEIQSLAIPSIRDKGGNVCI-ASHTGSGKTLAYLLPI 135
Query: 327 IQRLRQEELQ--GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+ L++EE++ G + S PR +I++PT ELA Q+ + +SLS S ++ GG
Sbjct: 136 LDALKREEIEADGDRLAKSRRPRALIVSPTRELAEQIFAVTKSLSHYA-KVSSRLILGGR 194
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVA 441
Q +NL+ VDV++ TPGR + +E L L + + +LDE D LF ED E
Sbjct: 195 PFALQKDNLEAPVDVVVGTPGRLVKHCEEKSLFLGSCKFVVLDEADTLFEAGFGEDVERL 254
Query: 442 LQSLIS----------SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG 491
L+ + + S + + V+AT+P + + PD + V +H+ +PG
Sbjct: 255 LRPVKNRNRGGDDGDESKKKSTTIVLVSATMPDRLKKLIDTSLPDVQYVKTQSLHKSAPG 314
Query: 492 LEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
L+ V+ G ++ K FL + ++ + E+ + +VFCN
Sbjct: 315 LKHNFVNVPGSEDKMK-----FL--EDIVVPMHERG--KRVMVFCN 351
>gi|313682085|ref|YP_004059823.1| dead/deah box helicase domain-containing protein [Sulfuricurvum
kujiense DSM 16994]
gi|313154945|gb|ADR33623.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
16994]
Length = 458
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 109/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++E+L + + P+ IQA P V+ G+ + A Q+G+GKT A+ LP+IQ
Sbjct: 2 SFTTLGLSAHLLETLSAKGYSEPTPIQAQVIPLVLRGRDILGAAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S+S S R +I+ PT ELASQV RS ++ G+ + + GG
Sbjct: 62 KLNAS-----SESGQASARALIIVPTRELASQVAEAIRSYAE-GLELNCIALYGGANMAR 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L EGVD+++ATPGR + L K+G + L + + DE D +F D F + +I
Sbjct: 116 QAKELSEGVDIIVATPGRLIELNKQGHVPLSRIEYLVFDEADTIF-DMGFIREVGQIIDL 174
Query: 449 SPVTAQYLFVTATL 462
P+ Q + +AT+
Sbjct: 175 LPLNRQNMLFSATM 188
>gi|441504874|ref|ZP_20986866.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
gi|441427456|gb|ELR64926.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
Length = 498
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++E++ Q + +PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLCTPILEAVANQGYEKPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + S R +IL PT ELA+QV N + SK +P S VV GG +
Sbjct: 62 RLSKGPI-----VRSNQVRALILTPTRELAAQVGENVATYSKR-LPLSSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++G DVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QMMRMRKGADVLVATPGRLLDLYNQNAVKFNQLEVLVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKQRQNLLFSATFSDEI 192
>gi|452966944|gb|EME71951.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 572
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 20/279 (7%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
DG + +F++LG ++++L + P+ IQA A P V+ G+ + Q+G+GKT
Sbjct: 11 DGPETATTTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTA 70
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
++ LP+I E+ ++ + PR +ILAPT ELA+QV N K P + ++
Sbjct: 71 SFTLPMI------EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYH-PLKKALI 123
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q+ L GVDVLIATPGR + + + G + L +++ ++DE D + D F
Sbjct: 124 IGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRML-DMGFIP 182
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++ ++ P Q LF +AT+ EI +L + F +M P ++S G
Sbjct: 183 DVEKIVGLLPKIRQTLFFSATMGPEI-RRLADAF-----LMNPKEVKVSTGASAATTVVQ 236
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++ ++K+ L LI V +FCN+K
Sbjct: 237 AMAVVEE------IDKRETLRHLIRIEEVKNAFIFCNRK 269
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L+++ +++ L +LDE D + D F ++ +++
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAKRQNLMFSATFSDEI 192
>gi|381188780|ref|ZP_09896340.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
gi|379649418|gb|EIA07993.1| ATP-dependent RNA helicase RhlE [Flavobacterium frigoris PS1]
Length = 419
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 138/270 (51%), Gaps = 17/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL S + ++ Q + P+ IQ + P V+ GK I Q+G+GKT A+ +P+I +
Sbjct: 3 FEELSLSKSIQRAVYEQGYTNPTPIQEQSIPLVLAGKDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G SK + R +++ PT ELA Q+ + + K + + GG Q Q
Sbjct: 63 LHR--IVGSSKK-AKQIRALVVTPTRELAVQIGQSFDTYGKY-TNLTQLTIFGGVSQNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVD+LIATPGR + L K+G + L +L C +LDE D + D F ++ ++ +
Sbjct: 119 VDALKNGVDILIATPGRLLDLHKQGFIDLDHLHCLVLDEADQML-DMGFVNDVKKIVKLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P+ I +L E+F + P +SP V + + +
Sbjct: 178 PKNRQTLFFSATMPIAI-RELAEMF-----LTKPETVTVSP------VSSTAENVEQRVY 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K++ L LI+ ++ +VF K
Sbjct: 226 FVEKTEKRNLLYNLIKNENLTDVLVFSRTK 255
>gi|90425187|ref|YP_533557.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris
BisB18]
gi|90107201|gb|ABD89238.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB18]
Length = 481
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 145/272 (53%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +LK +N+L P+ IQA P + G+ + Q+G+GKT ++ LP+I
Sbjct: 9 SFQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTASFALPIIH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + V S + GG
Sbjct: 69 RLLENRIKPQPKTC----RVLVLSPTRELSGQILESFNAYGRH-VRLTSALAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G+DVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSIMPGLDVLVATPGRLLDLVQTNALKLNQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 183 LPIKRQTLFFSATMPKDIADLADQMLRDPARVAVTP-------------VASTVERITQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L Q++++ V++ ++F K
Sbjct: 230 IIQVDHSAKPTLLAQILKQENVNRALIFTRTK 261
>gi|365858292|ref|ZP_09398238.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
gi|363714432|gb|EHL97942.1| putative ATP-dependent RNA helicase RhlE [Acetobacteraceae
bacterium AT-5844]
Length = 457
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 135/271 (49%), Gaps = 20/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ +L ++ + P+ IQA A P V+ G+ + Q+G+GKT A+ LP++
Sbjct: 4 FAALGLAEPILRALAQEGYSTPTPIQAQAIPHVLAGRDLLGIAQTGTGKTAAFALPLLHH 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G R +IL+PT ELASQ+ N R + + S V+ GG + Q
Sbjct: 64 LADRR----APAPRGGCRALILSPTRELASQIHDNIRGYGRF-LGLTSAVIFGGVGARPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ GVD+L+ATPGR ++ G +L + +LDE D + D F A++ L S
Sbjct: 119 VEALRRGVDILVATPGRLQDHVQTGAAKLQGVEVLVLDEADQML-DRGFWPAVKRLSSVM 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q LF +AT+P EI E+ D KV + P V + ++ +
Sbjct: 178 SKNRQTLFFSATMPAEIAKIAGEMLKDPAKVSVTP-------------VSSTAERVEQRL 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K++ L +L+ + + + +VF K
Sbjct: 225 IHIDASLKRNLLSELLREPGIGRALVFARTK 255
>gi|427407716|ref|ZP_18897918.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
gi|425713679|gb|EKU76691.1| hypothetical protein HMPREF9718_00392 [Sphingobium yanoikuyae ATCC
51230]
Length = 463
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 137/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLDNPKSIEVARPAT--ASTNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL ++E V ++FCN+K+
Sbjct: 229 ----------KREALRAMLEAEEVQSAVIFCNRKT 253
>gi|149910882|ref|ZP_01899514.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
gi|149806036|gb|EDM66019.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
Length = 397
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 140/273 (51%), Gaps = 24/273 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKE + +I+ + + + +P+ IQ P ++ G + Q+G+GKT A+ LP+I
Sbjct: 4 FKEFSLLESIIDRVSLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINN 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +KST R +IL PT ELASQ++ N + G+ ++ VV GG ++ Q
Sbjct: 64 FGRNKIDINAKST----RSLILTPTRELASQIMQNIDDYAD-GLGLKTKVVYGGVGRQNQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++++ G+D+L+ATPGR + LIK + L +LDE D + D F +Q +IS
Sbjct: 119 VDSIALGLDILVATPGRLLDLIKTDDINFKALEVFVLDEADTML-DMGFFKDVQRIISKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP---GLEEFLVDCSGDQESD 506
P Q L +AT+P EI E+ D ++ P +I+ +E ++S+
Sbjct: 178 PKNRQTLLFSATMPAEI-----EILADA-ILTDPTKIQITAETVTIERINQSVYHLEKSN 231
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K P LL ++EKS K ++FC K
Sbjct: 232 KVP---------LLLNILEKSHYKKVLIFCKTK 255
>gi|381201506|ref|ZP_09908631.1| DEAD/DEAH box helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 463
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 137/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLDNPKSIEVARPAT--ASTNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL ++E V ++FCN+K+
Sbjct: 229 ----------KREALRAMLEAEEVQSAVIFCNRKT 253
>gi|409099575|ref|ZP_11219599.1| DEAD/DEAH box helicase [Pedobacter agri PB92]
Length = 433
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 146/272 (53%), Gaps = 21/272 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + ++++L+++ + +P+ IQ + P +++GK + Q+G+GKT A+ +P++Q
Sbjct: 3 FKELNLIEPILKALEKEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + +K+T + + ++L PT ELA Q+ + ++ + R +V+ GG Q +Q
Sbjct: 63 LHEKHIN--TKATK-NIKALVLTPTRELAIQIEESFKAYG-SNLNLRHLVIFGGVNQHSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L++GVD+L+ATPGR + L+ +G + L + +LDE D + D F ++ +++
Sbjct: 119 VEALRKGVDILVATPGRLLDLMNQGFITLNTIELFVLDEADRML-DMGFIHDVKRVVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI KL KV + P IS E + + D
Sbjct: 178 PAKRQTLFFSATMPDEI-QKLANTILSSPTKVEVTP----ISSTAETIVQSVYFVDKPD- 231
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK L+ L+E + +VF K
Sbjct: 232 --------KKKLLIHLLEDKNIQTALVFTRTK 255
>gi|54302911|ref|YP_132904.1| ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9]
gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
SS9]
Length = 471
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 21/205 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++E++ +Q + PS IQA A P V+EGK + A Q+G+GKT A+ LPV++
Sbjct: 8 SFASLGLSAPILEAVTKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAAFTLPVLE 67
Query: 329 RLRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
RL S PRV ++L PT ELA+QV + +L +P S VV
Sbjct: 68 RL------------SNGPRVKPNQVRALVLTPTRELAAQVAESV-ALYAKNLPLSSAVVF 114
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG + Q+ L++G DVL+ATPGR + L + ++ + +LDE D + D F
Sbjct: 115 GGVKINPQMMRLRQGADVLVATPGRLLDLYNQRAVRFDQIEVLVLDEADRML-DMGFIRD 173
Query: 442 LQSLISSSPVTAQYLFVTATLPVEI 466
++ L+++ P Q L +AT EI
Sbjct: 174 IRKLLAAMPKQRQNLLFSATFSDEI 198
>gi|414343639|ref|YP_006985160.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028973|gb|AFW02228.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 417
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 117/195 (60%), Gaps = 10/195 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F G ++ +L++ RPS IQ A PP+++G+ ++A Q+GSGKT A++LP++Q
Sbjct: 46 FAAFGLISPLLATLEQVGHKRPSTIQVQAIPPLLKGRDVLVASQTGSGKTAAFVLPMLQI 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E S G PR +IL PT ELA+Q + CR L + + ++ V+ GG ++ Q
Sbjct: 106 LSKGE------SVHG-PRALILEPTRELAAQTAAVCRQLGR-RLSLKTRVICGGTSREQQ 157
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ ++ +GVD+++AT GR + L+ +G L L L +LDE D L DEDF ++ +L
Sbjct: 158 VRSIVDGVDIVVATHGRLLDLVMQGELVLEYLTYLVLDEADRLL-DEDFSESMTALTPYF 216
Query: 450 P-VTAQYLFVTATLP 463
P V Q +F +ATLP
Sbjct: 217 PDVPPQTVFCSATLP 231
>gi|120556730|ref|YP_961081.1| DEAD/DEAH box helicase [Marinobacter aquaeolei VT8]
gi|120326579|gb|ABM20894.1| DEAD/DEAH box helicase domain protein [Marinobacter aquaeolei VT8]
Length = 443
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + T PR +IL PT ELA+QV + SK VP ++ VV GG +
Sbjct: 62 RLAE------NPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-VPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILAL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LPAKRQNLLFSATFSNEI 191
>gi|114329100|ref|YP_746256.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114317274|gb|ABI63334.1| ATP-dependent RNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 402
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 144/271 (53%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ ++++L+ +F +P+ IQA A PP++EG+ + Q+G+GKT A+ LP++Q
Sbjct: 5 TFDSFGLAEPILQALQAASFHKPTPIQAGAIPPLLEGRDLLGIAQTGTGKTAAFSLPLLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+ + + S R +ILAPT ELA Q+ N R L +P R +++ GG +K
Sbjct: 65 HLMQKR----ERPRAFSTRALILAPTRELAVQIDDNLRMLG-GELPIRRVLILGGVGRKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ +Q G D++I TPGR L+ L L + +LDE D + D F ++ +++S
Sbjct: 120 QVQRMQRGADIVIGTPGRICDLMSTNELLLDQVSHFVLDEADRML-DLGFMRDIRKVLAS 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI +L E ++ P RI+ +EE + D+ +
Sbjct: 179 LPEKRQSLLFSATMPGEI-GRLAE-----GLLRNPARVRIA--VEE----PTPDRIAQHV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +L+ + K IVF K
Sbjct: 227 HFIESTGKRVLLTRLLADRALEKVIVFTRTK 257
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 134/271 (49%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S ++++L ++ +++PS IQ A P V+ G+ + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K R +IL PT ELA Q+ N G P S V+ GG K
Sbjct: 62 NLMERPKNRQKKKPV---RALILTPTRELALQIHENIEEYG-AGTPINSAVIFGGVSAKP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++L+ G+D+L+ATPGR + LI + + L + +LDE D + D F ++ +I+
Sbjct: 118 QIQSLRRGIDILVATPGRLLDLIGQHEIDLSFVEIFVLDEADRML-DMGFIHDVKRVITL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P EI K++ P ++P V + D
Sbjct: 177 LPKKRQTLLFSATMPDEIQALA------AKLLHNPVKVEVTP------VSSTVDLIETSL 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK L+ L+E VS T+VF K
Sbjct: 225 YYVDKANKWPLLVHLLEHEDVSSTLVFTRTK 255
>gi|302840989|ref|XP_002952040.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
nagariensis]
gi|300262626|gb|EFJ46831.1| hypothetical protein VOLCADRAFT_81727 [Volvox carteri f.
nagariensis]
Length = 622
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 25/331 (7%)
Query: 216 DYNSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKEL 273
DY S +N + + T + +G + + +++H S GD ++F+ +
Sbjct: 68 DYGSGANGNGYTSTSYQKTGMNGQPVSTEGFVSPSEYRRQHDISVQGDHVPDPLQTFESV 127
Query: 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333
G +++ ++R F P+ IQA A+P + G+ + ++GSGKT +LLP + ++Q
Sbjct: 128 GFPPDILDEIRRAGFKYPTPIQAQAWPIALSGRDLVAIAKTGSGKTCGFLLPGMLHIQQT 187
Query: 334 ELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL 393
K P +++LAPT ELA Q+ + + R+ V GG + QL ++
Sbjct: 188 R-----KDPRSGPTLLVLAPTRELAVQIKTEADKFGRSS-GIRNTCVYGGAPKGPQLRDI 241
Query: 394 QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA 453
Q GV ++IATPGR ++ G ++L + +LDE D + D FE +Q ++ + P
Sbjct: 242 QHGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEADRML-DMGFEPQIQRIVRTLPRQR 300
Query: 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
Q LF +AT P E+ + + V+ +H G+EE LV T
Sbjct: 301 QTLFFSATWPREVKHIA------AQFVVNQTVHVFIGGVEEKLV-----ANKSITQHVLV 349
Query: 514 LN----KKSALLQLIEKSPV-SKTIVFCNKK 539
LN K L ++I P ++ I+FC K
Sbjct: 350 LNSSHEKFGELSRIIRSKPAGTRIIIFCTTK 380
>gi|116074911|ref|ZP_01472172.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
gi|116068133|gb|EAU73886.1| ATP-dependent RNA helicase RhlE [Synechococcus sp. RS9916]
Length = 449
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 116/204 (56%), Gaps = 7/204 (3%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
SA ++ +F +LG S ++++L+ + + PS IQ A P V+ G+ + A Q+G+GK
Sbjct: 6 SASSALTAKATFDDLGLSAPLLQALREKGYSTPSPIQEQAIPAVLSGRDLMAAAQTGTGK 65
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
T + LP++ E L ++ G R ++L PT ELA+QVL N R S+ + RS
Sbjct: 66 TAGFTLPML-----ETLSHGARPGRGQIRALVLTPTRELAAQVLDNARDYSRH-LRLRSE 119
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
VV GG + Q++ LQ+GVD+L+ATPGR + L ++G ++ + +LDE D + D F
Sbjct: 120 VVFGGVKINPQIQRLQQGVDLLVATPGRLLDLHQQGAVRFERVEFLVLDEADRML-DMGF 178
Query: 439 EVALQSLISSSPVTAQYLFVTATL 462
++ ++S P Q L +AT
Sbjct: 179 IHDIRRVLSRLPERRQNLLFSATF 202
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++ +++ + + PS IQA A P V+EGK + A Q+G+GKT ++LP+++R
Sbjct: 3 FTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S++ R +IL PT ELA+Q+ N S+ + RS VV GG + Q
Sbjct: 63 LSEG-----SRTRPNHIRALILTPTRELAAQIHENAVVYSRH-LRLRSSVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ NL++G D+L+ATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 117 MMNLRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFFRDIKKILDLL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKNRQNLLFSATFSDEI 192
>gi|24375277|ref|NP_719320.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
gi|24350080|gb|AAN56764.1| ATP-dependent RNA helicase RhlE [Shewanella oneidensis MR-1]
Length = 535
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + K+ SG R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLAKGH-----KAKSGQTRALVLTPTRELAAQVGESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L+++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAKRQNLMFSATFSDEI 192
>gi|398385616|ref|ZP_10543635.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
gi|397720142|gb|EJK80702.1| DNA/RNA helicase, superfamily II [Sphingobium sp. AP49]
Length = 469
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 137/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVNEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QIKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPTQRQTLLFSATMP-PVIKKLADRFLDNPKSIEVARPAT--ASTNITQHLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL ++ V+ ++FCN+K+
Sbjct: 229 ----------KREALRAMLAAEDVTSAVIFCNRKT 253
>gi|339492846|ref|YP_004713139.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800218|gb|AEJ04050.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 441
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L +L S+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRML-DLGFAEELDALFSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKKRQTLLFSATFSEAIRQMARELLRD 203
>gi|167769379|ref|ZP_02441432.1| hypothetical protein ANACOL_00705 [Anaerotruncus colihominis DSM
17241]
gi|167668347|gb|EDS12477.1| DEAD/DEAH box helicase [Anaerotruncus colihominis DSM 17241]
Length = 439
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 141/273 (51%), Gaps = 23/273 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG ++ +++ + ++ PS IQ A PP + G + Q+G+GKT A+ +P++QR
Sbjct: 21 FEELGLIQPILRAVRDEGYVEPSAIQQQAIPPALAGHDVLGCAQTGTGKTAAFAIPILQR 80
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + Q S T R ++L PT ELA Q+ + +S + + RS VV GG Q Q
Sbjct: 81 L---DTQCASIKTPCVIRALVLTPTRELAIQIKDSFQSYGRY-MRLRSTVVFGGVPQTPQ 136
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVD+L+ATPGR LI +GI+ L ++ +LDE D + D F ++ +I+
Sbjct: 137 VDELRRGVDILVATPGRLNDLIGQGIIDLSSVSVFVLDEADRML-DMGFIHDVERVINHL 195
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEE--FLVDCSGDQESD 506
P Q LF +AT+P I + + D KV + P + +E+ + VD
Sbjct: 196 PNKRQTLFFSATMPKAIMHLCDRILTDPVKVAVTPVSSPVE-AIEQRLYFVDKP------ 248
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ L+ L+E + +VF K
Sbjct: 249 --------NKRRLLIYLLEDVSIVSALVFTFTK 273
>gi|298207628|ref|YP_003715807.1| ATP-dependent RNA helicase [Croceibacter atlanticus HTCC2559]
gi|83850264|gb|EAP88132.1| putative ATP-dependent RNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 424
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 144/273 (52%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L +++SL Q + +P+ IQA + P +++G+ + + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFEDLNIISPILKSLDEQGYEKPTSIQARSIPLILKGEDVLGSAQTGTGKTGAFAIPIIQ 61
Query: 329 RLRQ--EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L E +G K S +I+ PT ELA Q+ N + K +S V+ GG Q
Sbjct: 62 HLANDLENAKGKRKILS-----LIVTPTRELAIQIGENFSAYGKY-TSLKSTVIFGGVPQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ GVDVLIATPGR + L+ +G + L +++ +LDE D + D F ++ L+
Sbjct: 116 RAQTNKLKSGVDVLIATPGRLLDLMDQGYISLKDVKYFVLDEADRML-DMGFIHDIKKLL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ P Q LF +AT+P I ++ + K V + + ++++L ++
Sbjct: 175 TKLPKNRQSLFFSATMPKNILTLSNQILKNPKKVEVNPVSSTAETIQQYLY------TTN 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT NK LL ++E + + +VF K
Sbjct: 229 KT------NKGDLLLHILEDPKIDQVLVFSKTK 255
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKQRQNLMFSATFSDEI 192
>gi|409422582|ref|ZP_11259673.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
HYS]
Length = 443
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 119/208 (57%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L+R ++ P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAKLGLIEPLLRALERLSYNTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G +K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---TLEG-AKVASNSVRALVLVPTRELAEQVHANIREYAEH-LPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+D+L+ATPGR + L ++ ++ L+ +LDE D + D F L+++ ++
Sbjct: 117 QMMKLRKGIDLLVATPGRLLDLFRQNAVKFNQLQALVLDEADRML-DLGFAEELRAVYAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT EI + D
Sbjct: 176 LPARRQTLLFSATFSDEIRQLAAQTLND 203
>gi|87199313|ref|YP_496570.1| DEAD/DEAH box helicase-like protein [Novosphingobium
aromaticivorans DSM 12444]
gi|87134994|gb|ABD25736.1| DEAD/DEAH box helicase-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 464
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 134/274 (48%), Gaps = 26/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++S+ + P+ IQA A P V+ K I Q+G+GKT ++LP+I
Sbjct: 3 FADLGLSDELLKSVLDAGYDEPTPIQAQAIPAVLMMKDIIGIAQTGTGKTAGFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +IL PT ELA+QV N K + ++ GG + Q
Sbjct: 63 LAHGRRRALM------PRSLILEPTRELAAQVAENFEKYGK-NHDLKMALLIGGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQEGVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 116 VKALQEGVDVLIATPGRLMDLFERGKILLTGCEMLVIDEADRML-DMGFIPDIENICSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q L +AT+P I KL + F P V P + + +F V + Q
Sbjct: 175 PTTRQTLLFSATMPPPI-KKLADKFLSNPKSIEVARPAA--TNTNIAQFKVRSTTRQ--- 228
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ L L+ VS I+F N+K+
Sbjct: 229 ---------KREVLRHLLRTDNVSTAIIFANRKT 253
>gi|23013512|ref|ZP_00053398.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 311
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 139/279 (49%), Gaps = 20/279 (7%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
DG + +F++LG ++++L + P+ IQA A P V+ G+ + Q+G+GKT
Sbjct: 11 DGPETTETTFEDLGLGPEILKALAESGYTHPTPIQAQAIPVVLMGRDVLGCAQTGTGKTA 70
Query: 321 AYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
++ LP+I E+ ++ + PR +ILAPT ELA+QV N K P + ++
Sbjct: 71 SFTLPMI------EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYH-PLKKALI 123
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG Q+ L GVDVLIATPGR + + + G + L +++ ++DE D + D F
Sbjct: 124 IGGESMSDQVALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRML-DMGFIP 182
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++ ++ P Q LF +AT+ EI +L + F +M P ++S G
Sbjct: 183 DVEKIVGLLPKIRQTLFFSATMGPEI-RRLADAF-----LMNPKEVKVSTGASAATTVVQ 236
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++ ++K+ L LI V +FCN+K
Sbjct: 237 AMAVVEE------IDKRETLRHLIRVEEVKNAFIFCNRK 269
>gi|347760077|ref|YP_004867638.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579047|dbj|BAK83268.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 445
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 141/271 (52%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + +P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYTQPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ + K R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREKGRAHPKGA----RALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ ++++
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEADRML-DMGFVRDIRKIVAA 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + D P +++P + D+
Sbjct: 177 LPTDRQTLLFSATMPKSISDLAHGLLRD------PATVQVTPP------SSTVDRIRQAV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ AL L++ V + +VF K
Sbjct: 225 MFVDTANKREALKLLVDSPKVERAVVFTLMK 255
>gi|350426043|ref|XP_003494315.1| PREDICTED: ATP-dependent RNA helicase rhlE-like [Bombus impatiens]
Length = 415
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 143/275 (52%), Gaps = 18/275 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++++Q+F+ P+ IQ A P ++ G + + Q+G+GKT +++LP++Q
Sbjct: 2 SFDTLGLTTEILSAIQQQHFVSPTPIQQQAIPLILAGHDVMASAQTGTGKTASFVLPILQ 61
Query: 329 RLR--QEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+L + +L G R+ VILAPT ELA+Q+ N R S+ +P RS+VV GG
Sbjct: 62 QLSLIKAKLDKNKVIQKGKRRLYSVILAPTRELAAQIGENIRDYSR-DLPIRSLVVFGGV 120
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q+ L+ GVD+L+ATPGR + L+++ + L ++ +LDE D + D F ++
Sbjct: 121 SINPQMMKLRGGVDILVATPGRLLDLVQKNAIDLSTVKTLVLDEADRML-DMGFIHDIRR 179
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI + KV+ + S + +F+
Sbjct: 180 IINKLPTKRQNLLFSATFSPEIKTLSQTILRQPKVIAVSKENSTSTQVSQFV------HR 233
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK K+ L LI K+ + ++F K
Sbjct: 234 VDKR------RKRELLSYLIGKNQWQQVLIFTRTK 262
>gi|340777398|ref|ZP_08697341.1| DNA/RNA helicase [Acetobacter aceti NBRC 14818]
Length = 736
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 139/277 (50%), Gaps = 26/277 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ +F +LG S+ ++ ++ ++ P+ IQA A P V+ G+ + Q+G+GKT ++ LP
Sbjct: 234 SQITFADLGLSEPILRAVTEMGYVHPTPIQAQAIPAVLHGQDVLGVAQTGTGKTASFTLP 293
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ E+ S++ + PR +IL PT ELA QV N + K + ++ GG
Sbjct: 294 ML------EILSGSRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGES 346
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q E L +GVDVLIATPGR + L + G L L R ++DE D + D F ++ +
Sbjct: 347 MADQKEVLNKGVDVLIATPGRLLDLFERGGLLLTQTRILVIDEADRML-DMGFIPDIEKI 405
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGD 502
+ P Q LF +AT+ EI +L + F P V P ++ +E L+ D
Sbjct: 406 VGLLPANRQTLFFSATMAPEI-RRLADAFLHSPKQITVSRPST--VATTIETGLIVVDED 462
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ L +L+ + IVFCN+K
Sbjct: 463 ------------DKRKVLRKLLRAENLQNAIVFCNRK 487
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 142/277 (51%), Gaps = 31/277 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ +++++ + PS IQA A P V+ GK + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVVTGG 383
R L+ S P R +IL PT ELA+QV +S+S G+ P +S VV GG
Sbjct: 62 R--------LNASAPIKPHRIRALILTPTRELAAQV---AQSVSTYGLHTPLKSAVVFGG 110
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ +Q+ L+ GVD+LIATPGR + L +G + L +LDE D + D F ++
Sbjct: 111 VKINSQIAQLRRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRML-DMGFIHDIR 169
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
++ P Q L +AT EI + D V + + +E+++
Sbjct: 170 RILKLLPAERQNLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPV---- 225
Query: 504 ESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
DK +K ALL +L+E+ ++ +VF K
Sbjct: 226 --DK-------KRKGALLRELVEEKCWTQVLVFSRTK 253
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 73 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 186 LPKQRQNLMFSATFSDEI 203
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 72
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 73 LLSKGQ-----KAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 186 LPKQRQNLMFSATFSDEI 203
>gi|158423990|ref|YP_001525282.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158330879|dbj|BAF88364.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 540
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 10/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG ++ ++ +L + + P+ IQA A P ++ GK I Q+G+GKT A+ LP++
Sbjct: 3 SFSELGLAEPIVRALTEEKHVTPTPIQAQAIPAILSGKDLIGIAQTGTGKTAAFGLPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFRQ 386
L + + +S RV+IL+PT EL+ Q+L N L K G R + + GG
Sbjct: 63 HLSRNPRRIEPRSC----RVLILSPTRELSGQILDN---LDKFGRHIRLSTTLAIGGVPM 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ LQ GVDVL+ATPGR M L++ L+L + +LDE D + D F A+++++
Sbjct: 116 GRQIRALQRGVDVLVATPGRLMDLVENNALKLDTVEVFVLDEADQML-DMGFVHAIKAIV 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
P LF +AT+P I +
Sbjct: 175 RRLPHKRHSLFFSATMPSAIAD 196
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 137/271 (50%), Gaps = 21/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK LG S+ +++++ Q + P+ IQ + P V+EGK + + Q+G+GKT + LP++Q
Sbjct: 3 FKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQL 62
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + P R +IL PT ELA+QV + + K V RS V+ GG QK+
Sbjct: 63 LSQ------TPPLRNRPVRALILTPTRELAAQVHQSVKDYGKF-VDLRSTVIFGGVNQKS 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L +G+L L + +LDE D + D F ++ ++
Sbjct: 116 QVSTLRNGVDVLVATPGRLIDLNNQGLLSLAKVEILVLDEADRML-DMGFLRDIKKIMKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + E + V + +E+ + + ++++D
Sbjct: 175 IPKQRQTLLFSATFSREIRSLASEFLKNPVSVESTPENTTVEAIEQQVYRVAKEKKTD-- 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
L++LI + + +VF K
Sbjct: 233 ----------LLIKLISEGNWEQVLVFSRTK 253
>gi|334343993|ref|YP_004552545.1| DEAD/DEAH box helicase [Sphingobium chlorophenolicum L-1]
gi|334100615|gb|AEG48039.1| DEAD/DEAH box helicase domain protein [Sphingobium chlorophenolicum
L-1]
Length = 454
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 135/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYH-KLNMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QLKALEKGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLSNPKSIEVARPAT--ASTNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL ++E V ++FCN+K+
Sbjct: 229 ----------KREALRAMLEAEDVLSAVIFCNRKT 253
>gi|390168903|ref|ZP_10220852.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
gi|389588492|gb|EIM66538.1| DEAD/DEAH box helicase [Sphingobium indicum B90A]
Length = 445
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 135/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD +++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLKAVSEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYH-KLNMALLIGGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QLKALEKGVDVLIATPGRLMDLFQRGKILLNGCSMLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P I KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMPAPI-KKLADRFLSNPKSIEVARPATA--STNITQRLVKVDSRK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL ++E V ++FCN+K+
Sbjct: 229 ----------KREALRAMLEAEDVLSAVIFCNRKT 253
>gi|37912838|gb|AAR05178.1| putative ATP-dependent RNA helicase [uncultured marine
proteobacterium ANT8C10]
Length = 635
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 122/211 (57%), Gaps = 8/211 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFKELG S+ +++SL+ +PS+IQ A P ++ GK+ + A Q+G+GKT +++LP+++
Sbjct: 2 SFKELGLSEPILKSLEDLEHTKPSEIQQQAIPVILAGKNIMAAAQTGTGKTGSFVLPMLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ +K S + ++L PT ELA+QV + S K S V GG +
Sbjct: 62 MLHEQ-----AKPYSKNVHALVLTPTRELAAQVRESVHSYGKL-TNITSTAVFGGAKIFP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+L+ATPGR + L+ + ++L ++ +LDE D + D F ++ +I+
Sbjct: 116 QKAKLKKGVDILVATPGRLLDLVNQKAVKLDQVQILVLDEADHML-DMGFIHDIKKIIAM 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKV 479
+P T Q L +AT EI KL + D V
Sbjct: 175 TPPTRQNLLFSATFSPEI-KKLAQSLGDGLV 204
>gi|386019450|ref|YP_005937474.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
gi|327479422|gb|AEA82732.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 441
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L +L S+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRML-DLGFAEELDALFSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKKRQTLLFSATFSEPIRQMARELLRD 203
>gi|326387193|ref|ZP_08208803.1| DEAD/DEAH box helicase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208374|gb|EGD59181.1| DEAD/DEAH box helicase-like protein [Novosphingobium
nitrogenifigens DSM 19370]
Length = 481
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 135/274 (49%), Gaps = 26/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++S+ + P+ IQA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 24 FADLGLSDELLKSVYDAGYDEPTPIQAQAIPSVLMMRDLIGIAQTGTGKTASFVLPMIDV 83
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +IL PT ELA+QV N K R ++ GG + Q
Sbjct: 84 LAHGRRRALM------PRSLILEPTRELAAQVAENFEKYGK-NHDLRMALLIGGVQMGDQ 136
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L +GVDVLIATPGR M L + G + L ++DE D + D F ++S+ S
Sbjct: 137 VKALSDGVDVLIATPGRLMDLFERGKILLTGCELLVIDEADRML-DMGFIPDIESICSKL 195
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q L +AT+P I KL + F P V P I+ + + V C
Sbjct: 196 PTTRQTLLFSATMPPPI-KKLADRFLSNPKYIEVARPASANIN--IVQHKVAC------- 245
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
A +K+ L L+ VS IVF N+K+
Sbjct: 246 -----ASRDKRKVLRHLLRTDNVSTAIVFANRKT 274
>gi|399017820|ref|ZP_10720009.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398102587|gb|EJL92767.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 504
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 18 FEDFGLSPDILKALSAQGYIHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L STS SP R +IL PT ELA QV N ++ S+ P RS VV GG
Sbjct: 78 LLAH------ASTSMSPARHPVRALILTPTRELADQVADNVKAYSRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMAPQTATLRGGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V +E + + ++
Sbjct: 190 IINLLPKQRQNLMFSATFSPEI-KKLAASFQNNPVT-----------IEVARSNATAERV 237
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + K A+ +I + + + IVF N K
Sbjct: 238 TQTIYKVDEDAKSDAVAHIIRERKLKQVIVFSNTK 272
>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
Length = 462
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q +L P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+Q+ N R S+ + RS+VV GG
Sbjct: 62 RLVQNEPHAKGRRPV---RALILTPTRELAAQIGENVREYSRY-LDIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRSGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPAKRQNLLFSATFSDEI 194
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 17/272 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT + LP+IQ
Sbjct: 12 TFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV +N ++ +K RS VV GG
Sbjct: 72 RLL--PLASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TSLRSAVVFGGVDMN 128
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ +++
Sbjct: 129 PQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQRILN 187
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI KL + R +E + + +
Sbjct: 188 LLPAERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNSTATNVTQI 235
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E A +K A+++LI + + IVFCN K
Sbjct: 236 VYEVAEGDKTGAVVKLIRDRGLKQVIVFCNSK 267
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 114/198 (57%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S +++++ +Q + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 TFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G +++ R +IL PT ELA+QV + + K + +S VV GG +
Sbjct: 62 RLSKGKPAGPNQA-----RALILTPTRELAAQVSDSVETYGKQ-LSLKSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L + ++ L +LDE D + D F ++ ++ +
Sbjct: 116 QMMRLRKGVDILVATPGRLLDLFNQNAIKFDQLEILVLDEADRML-DMGFIHDIKRILKA 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKNRQNLLFSATFSNEI 192
>gi|396925106|gb|AFN89211.1| vasa [Solea senegalensis]
Length = 648
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 29/281 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + +++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 212 TFEEAALCESLNKNISKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPMLQ 271
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G S P +I+APT EL +Q+ R + G R +VV GG
Sbjct: 272 RLMADGVAGSRFSELQEPEAIIVAPTRELINQIYLEARKFA-YGTCVRPVVVYGGVSTGH 330
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G +VL TPGR M +I G + L LR +LDE D + D FE ++ L+ S
Sbjct: 331 QIRDVLRGCNVLCGTPGRLMDMIGRGKVGLSKLRYLVLDEADRML-DMGFEPEMRRLVGS 389
Query: 449 SPVTA----QYLFVTATLPVEI------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
+ A Q L +AT P +I + K+ +F VV G
Sbjct: 390 PGMPAKENRQTLMFSATFPEDIQRLAADFLKVDYLFLAVGVVGGA--------------- 434
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
CS Q++ E NK+ LL +++ + + +TIVF KK
Sbjct: 435 CSDVQQT--FIEVGKFNKREQLLDILKTTGMDRTIVFVEKK 473
>gi|71279965|ref|YP_269372.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145705|gb|AAZ26178.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 399
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 142/272 (52%), Gaps = 22/272 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK + +I+ + + + +P+ IQ P ++ G + Q+G+GKT A+ LP+I +
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ ++ +KST R +IL PT ELASQ++ N S G+ ++ VV GG ++ Q
Sbjct: 64 FGRNKIDIKAKST----RSLILTPTRELASQIMQNIDDYSD-GLGLKTKVVYGGVGRQAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+++++ G+D+L+ATPGR + LI+ G + L +LDE D + D F +QS+IS
Sbjct: 119 VDSIELGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTML-DMGFFKDVQSIISKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ--ESDK 507
P + Q L +AT+P EI E+ + ++ P +I+ E +D DK
Sbjct: 178 PKSRQTLLFSATMPAEI-----EILAEA-ILTDPTKIQITA--ETVTIDLVNQSVYHLDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ NK L ++ K+ K ++FC K
Sbjct: 230 S------NKVPLLFNILTKADYEKVLIFCKTK 255
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 136/275 (49%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++ +L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 18 FEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L STS SP R +IL PT ELA QV N ++ S+ P RS VV GG
Sbjct: 78 LLAH------ASTSASPARHPVRALILTPTRELADQVADNVKAYSRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V + + R + E E
Sbjct: 190 IINLLPKKRQNLMFSATFSPEI-KKLAGSFQNNPVTI--EVARSNATAERVTQTIYRVDE 246
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
S K +F+ ++ L Q+ IVF N K
Sbjct: 247 SAKADAVSFIIRERNLKQV---------IVFSNTK 272
>gi|258541735|ref|YP_003187168.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041656|ref|YP_005480400.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384050171|ref|YP_005477234.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384053281|ref|YP_005486375.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384056513|ref|YP_005489180.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384059154|ref|YP_005498282.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384062448|ref|YP_005483090.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384118524|ref|YP_005501148.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421848381|ref|ZP_16281369.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|421852361|ref|ZP_16285050.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|256632813|dbj|BAH98788.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635870|dbj|BAI01839.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638925|dbj|BAI04887.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641979|dbj|BAI07934.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256645034|dbj|BAI10982.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256648089|dbj|BAI14030.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256651142|dbj|BAI17076.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654133|dbj|BAI20060.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|371460742|dbj|GAB26572.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371479441|dbj|GAB30253.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 445
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 144/274 (52%), Gaps = 25/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++L Q + P+ IQ + P +++G+ + Q+G+GKT ++ LP+++
Sbjct: 4 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +T PRV++LAPT EL +Q+ + ++ ++ + F VV GG Q Q
Sbjct: 64 L----IKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARH-MKFTQAVVFGGVGQGRQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E ++ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ +++
Sbjct: 119 VEAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRML-DMGFVRDIRRIMTFV 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P I + + D +V + P + RI + V+ +GD
Sbjct: 178 PEQRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAV--MFVNGAGD--- 232
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ ALL ++E VS+ +VF K
Sbjct: 233 ----------KRDALLNMVESPKVSRAVVFTLMK 256
>gi|418292806|ref|ZP_12904736.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064219|gb|EHY76962.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 441
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +Q A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQTEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K TS S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVTSNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L +L S+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRML-DLGFAEELDALFSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKKRQTLLFSATFSEPIRQMARELLRD 203
>gi|197105174|ref|YP_002130551.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
gi|196478594|gb|ACG78122.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Phenylobacterium
zucineum HLK1]
Length = 513
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 136/271 (50%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQA A P ++G+ + Q+G+GKT A+ LP+I R
Sbjct: 4 FSDLGLSPATLKAVAETGYTTATPIQAEAIPMALQGRDVLGIAQTGTGKTAAFTLPMIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR +++APT ELA QV ++ + G ++ GG K Q
Sbjct: 64 L------AAGRAKARMPRALVIAPTRELADQVSASFEKYA-MGQKLTWALLIGGVSFKDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F L+ + +
Sbjct: 117 EQKLDRGVDVLIATPGRLLDHFERGKLLMTGVQIMVVDEADRML-DMGFIPDLERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + ++LV + P
Sbjct: 176 PAKKQTLFFSATMPPEITRLTKQFLNDPVRIEASRPATTAETITQYLV---------RIP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K++AL +LI ++ ++ IVFCN+K+
Sbjct: 227 SADPKAKRTALRELIGRAEINNGIVFCNRKT 257
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 120/211 (56%), Gaps = 8/211 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ + +++R + +P+ +Q A P V+EG+ I A +G+GKT A+LLPV+
Sbjct: 4 FADLGLSEAALAAVERLGYDQPTPVQEQAIPHVLEGRDLIAAASTGTGKTAAFLLPVLSM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + +PRV++++PT ELA Q+ C +S+ F + V GG Q
Sbjct: 64 LPR------ARGRNRAPRVLVVSPTRELAQQIARTCMQISRKTGHF-TTTVFGGTPYGPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G DVLIATPGR L+K G++ L +++ +LDE D + D F + +++ ++
Sbjct: 117 IKELRGGTDVLIATPGRLKDLMKRGVVDLSSVQTLVLDEADRML-DMGFLPDVTTIVDAT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
P Q L +AT+ I L + + +V
Sbjct: 176 PECRQTLLFSATIDHSIQKNLGSLLTNPAIV 206
>gi|229529522|ref|ZP_04418912.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|384424520|ref|YP_005633878.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
gi|229333296|gb|EEN98782.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|327484073|gb|AEA78480.1| ATP-dependent RNA helicase VC1407 [Vibrio cholerae LMA3984-4]
Length = 397
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLFGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|345863070|ref|ZP_08815283.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125953|gb|EGW55820.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 456
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 110/199 (55%), Gaps = 7/199 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++E++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++R
Sbjct: 3 FASLGLSAPLLEAVAEQGYKTPSPIQAQAIPAVIKGRDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ ++ + R +IL PT ELA QV + + K +P RS VV GG + Q
Sbjct: 63 LSKD-----GRAQANQVRSLILTPTRELAVQVGESVATYGKH-LPLRSTVVYGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ GVDVL+ATPGR + L ++ L +LDE D + D F ++ ++S
Sbjct: 117 MMKLRRGVDVLVATPGRLLDLYNRNAVKFKQLEVLVLDEADRML-DMGFIHDIRKILSVL 175
Query: 450 PVTAQYLFVTATLPVEIYN 468
P Q L +AT EI +
Sbjct: 176 PKQRQNLMFSATFSDEIRH 194
>gi|262193653|ref|YP_003264862.1| DEAD/DEAH box helicase [Haliangium ochraceum DSM 14365]
gi|262077000|gb|ACY12969.1| DEAD/DEAH box helicase domain protein [Haliangium ochraceum DSM
14365]
Length = 497
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 147/280 (52%), Gaps = 32/280 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG S+ ++ ++ + + IQ A PP ++G+ + Q+G+GKT A+ LP++QR
Sbjct: 3 FQQLGLSEPLVRAVHDAGYTNATPIQTQAIPPALDGRDLLGCAQTGTGKTAAFSLPILQR 62
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E G ++ G+ R +I+ PT ELA+Q+ + + + +P R+ V+ GG Q
Sbjct: 63 L-AETGDGNARPRRGARPIRALIVTPTRELAAQIGDSMTTYGR-HLPLRNTVIFGGVNQN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ G+D+L+ATPGR + L+ +G + L L +LDE D + D F ++ +++
Sbjct: 121 RQVDALRRGIDILVATPGRLLDLMDQGYIHLDRLEVFVLDEADRML-DMGFIHDIRKIVA 179
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES-- 505
+ P Q L +AT+P EI + ++ GL + V S ES
Sbjct: 180 AVPSERQTLLFSATMPGEIQS-------------------LAAGLLQEPVKVSVTPESTA 220
Query: 506 -DKTPETAFL----NKKSALLQLIEKSP-VSKTIVFCNKK 539
+ + +L +K+S L +L+ P ++K +VF K
Sbjct: 221 AETVEQCVYLVSREDKQSLLTELLRDDPEMAKVLVFSRTK 260
>gi|115525740|ref|YP_782651.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris BisA53]
gi|115519687|gb|ABJ07671.1| DEAD/DEAH box helicase domain protein [Rhodopseudomonas palustris
BisA53]
Length = 490
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 143/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ G ++ + +L +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 17 SFQVFGLAEPLTRALAEENYTTPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 76
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ L K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 77 RMLENRIKPLPKTC----RVLVLSPTRELSGQILESFNAYGRH-IRLASALAIGGVPMGR 131
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G+DVL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 132 QVRSIMPGLDVLVATPGRLLDLVQTNALKLTQVEFLVLDEADRML-DMGFIHDIRKIVAK 190
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + D+ + +
Sbjct: 191 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VASTVDRITQR 237
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L Q++++ V++ +VF K
Sbjct: 238 VIQLDHSAKPTVLAQILKQDDVNRALVFTRTK 269
>gi|418407317|ref|ZP_12980635.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
gi|358006461|gb|EHJ98785.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens 5A]
Length = 492
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 143/273 (52%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQADRPANRTT----RTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G DVL+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS + ++P ++IVF K
Sbjct: 233 KTD----LLKKS-----LNENPDGRSIVFLRTK 256
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 7/212 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S ++ ++ + + PS IQA A PPV+ G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G+ R +IL PT ELA Q+ + + K + RS V+ GG Q
Sbjct: 62 RL-----TASAPRKKGAIRALILTPTRELALQIGESFEAYGKY-LTLRSTVIFGGVGQAP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+LIA PGR L+ +G+L L N+ +LDE D + D F ++ +I+
Sbjct: 116 QVAALKKGVDILIACPGRLNDLVGQGLLDLSNIEIFVLDEADRML-DMGFVHDVKKVIAK 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
P Q L +AT+P EI + D V
Sbjct: 175 LPRQRQNLMFSATMPKEIEQLAAGILHDPAFV 206
>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|359440332|ref|ZP_09230253.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
gi|392533028|ref|ZP_10280165.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|358037869|dbj|GAA66502.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
Length = 434
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + EL ST+ +P ++LAPT ELA Q+ +N R +K + + + GG
Sbjct: 62 KLVESEL-----STTNAPHALVLAPTRELAEQIANNFRDFAKH-TSLKVVSLFGGVSTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+EGVD+++ATPGR I+ G L L +++ +LDE D + D F +Q++I S
Sbjct: 116 QANALKEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRML-DMGFIEDMQNVIKS 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT P I +V ++V + + +E + +
Sbjct: 175 CAEERQILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERR----- 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +LI K + +VF N K
Sbjct: 230 -------KQELLSELIGKKNWQQVLVFVNMK 253
>gi|421614245|ref|ZP_16055309.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
gi|408494963|gb|EKJ99557.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SH28]
Length = 449
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 133/276 (48%), Gaps = 31/276 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 42 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 101
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L++ GVP V++GG
Sbjct: 102 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAR-GVPTEIAVLSGGKNMNR 153
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 154 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 212
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 213 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 255
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
E + +K L L+++ + I+FC K
Sbjct: 256 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCRTK 291
>gi|359454797|ref|ZP_09244066.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
gi|358048174|dbj|GAA80315.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
Length = 434
Score = 122 bits (305), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + EL ST+ +P ++LAPT ELA Q+ +N R +K + + + GG
Sbjct: 62 KLVESEL-----STTNAPHALVLAPTRELAEQIANNFRDFAKH-TSLKVVSLFGGVSTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+EGVD+++ATPGR I+ G L L +++ +LDE D + D F +Q++I S
Sbjct: 116 QANALKEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRML-DMGFIEDMQNVIKS 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT P I +V ++V + + +E + +
Sbjct: 175 CAEERQILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERR----- 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +LI K + +VF N K
Sbjct: 230 -------KQELLSELIGKKNWQQVLVFVNMK 253
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L Q S S SP R +IL PT ELA QV N + + P RS VV GG
Sbjct: 78 LLQH------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V + + R + E +E
Sbjct: 190 IINLLPKQRQNLLFSATFSPEI-KKLAASFQNNPVTI--EVARSNATAENVTQTIYKVEE 246
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K +F+ ++ L Q+ IVF N K
Sbjct: 247 AAKADAVSFIIRQRELKQV---------IVFSNTK 272
>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 467
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 136/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + S++ +L P+ IQ + P V++GK + + Q+G+GKT A++LP+I+
Sbjct: 34 TFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 93
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
LR E+ K +IL PT ELA+QV +N + +K + RS V GG +
Sbjct: 94 LLRVED-----KPKRLQVHSLILTPTRELAAQVEANAKGYTKY-LGIRSDAVFGGVSIRP 147
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ LQ GVD+L+ATPGR + LI + ++ NL+ +LDE D + D F ++ +I
Sbjct: 148 QVKRLQGGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRML-DMGFIRDIKKVIEF 206
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q + +AT I + + D + ++ +P +E + C ++ D
Sbjct: 207 LPKKRQNMMFSATFSAPIKKLALGLLNDPVEIKASVQNKAAPTIEHLVHPCDMARKVD-- 264
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
L LI+ + + +VF K
Sbjct: 265 ----------LLCHLIKTNEWKQVLVFARTK 285
>gi|396925108|gb|AFN89212.1| vasa [Solea senegalensis]
Length = 639
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 139/281 (49%), Gaps = 29/281 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + +++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 203 TFEEAALCESLNKNISKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPMLQ 262
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G S P +I+APT EL +Q+ R + G R +VV GG
Sbjct: 263 RLMADGVAGSRFSELQEPEAIIVAPTRELINQIYLEARKFAY-GTCVRPVVVYGGVSTGH 321
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G +VL TPGR M +I G + L LR +LDE D + D FE ++ L+ S
Sbjct: 322 QIRDVLRGCNVLCGTPGRLMDMIGRGKVGLSKLRYLVLDEADRML-DMGFEPEMRRLVGS 380
Query: 449 SPVTA----QYLFVTATLPVEI------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
+ A Q L +AT P +I + K+ +F VV G
Sbjct: 381 PGMPAKENRQTLMFSATFPEDIQRLAADFLKVDYLFLAVGVVGGA--------------- 425
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
CS Q++ E NK+ LL +++ + + +TIVF KK
Sbjct: 426 CSDVQQT--FIEVGKFNKREQLLDILKTTGMDRTIVFVEKK 464
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKQRQNLMFSATFSDEI 192
>gi|452751177|ref|ZP_21950923.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
gi|451961327|gb|EMD83737.1| ATP-dependent RNA helicase RhlE [alpha proteobacterium JLT2015]
Length = 591
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 138/274 (50%), Gaps = 26/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S + E++ + + P+ IQA A P + G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FNDFNLSPKIAEAVASEGYETPTPIQAQAIPIGLSGRDLLGIAQTGTGKTAAFALPILNR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E K T +PRV++LAPT ELA+Q+ + R+ + + V GG + Q
Sbjct: 64 LAEEPY----KLTPKAPRVLVLAPTRELATQIAESFRTYGRK-LRLNIETVFGGVKDGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L GVD+L+ATPGR + LI + L L ++ +LDE D + D F AL+ ++
Sbjct: 119 KRRLAAGVDILVATPGRLLDLIDQRALSLHEVQVLVLDEADQML-DLGFIHALRKIVPMV 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P T Q LF +AT+P +I + + KV + P S E C+
Sbjct: 178 PKTRQTLFFSATMPKQISELAGKYLTNPAKVEVQP----ESTTAERVEQRCT-------- 225
Query: 509 PETAFLN--KKSALLQL-IEKSPVSKTIVFCNKK 539
F+N +K ALL L +E++ + +VF K
Sbjct: 226 ----FVNAKEKQALLTLTLERTEFDRVLVFTRTK 255
>gi|329889383|ref|ZP_08267726.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328844684|gb|EGF94248.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 490
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 130/271 (47%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQ A P + G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR V+LAPT ELA QV + +K G +++ GG Q
Sbjct: 64 LAS------GRARARMPRAVVLAPTRELADQVAESFAKYAK-GTRLNWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L G + L + ++DE D + D F ++ + +
Sbjct: 117 IAALNKGVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D RI D Q + P
Sbjct: 176 PPRRQTLFFSATMPPEITRLTQQFLKDPT--------RIEVARPATTADTIT-QHITRLP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K++AL L+E+ V IVFCN+KS
Sbjct: 227 SSDPKAKRTALRALVERGDVQNGIVFCNRKS 257
>gi|365960392|ref|YP_004941959.1| DEAD-box ATP dependent DNA helicase [Flavobacterium columnare ATCC
49512]
gi|365737073|gb|AEW86166.1| DEAD-box ATP dependent DNA helicase [Flavobacterium columnare ATCC
49512]
Length = 421
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 139/273 (50%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ ++ES+K N+ +P++IQ P V+EG+ + Q+G+GKT A+ +P++
Sbjct: 2 TFEPFRFHRNIVESIKEANYTKPTEIQEKTIPIVLEGEDLVGCAQTGTGKTAAFAIPILN 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S R V+LAPT ELA Q+ + K ++ + GG Q T
Sbjct: 62 YLI--PIVG-SVKKKKYIRTVVLAPTRELALQIEESFNKYGKY-TNCTTLTIYGGVPQAT 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+EG+D+LIATPGRF+ L K+G++ + +L ++DE D++ D F ++ +
Sbjct: 118 QVEKLKEGIDILIATPGRFLDLNKQGVIDINHLHHLVIDEADLML-DMGFINDVRKITKI 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE--FLVDCSGDQESD 506
+P Q L +AT+P+EI E K V S + + + V+ S
Sbjct: 177 APQNRQTLLFSATMPIEIREIAEEFLKKPKYVEVKSTFNNSQNIIQSVYFVEKS------ 230
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK LL++I++ + TI+F K
Sbjct: 231 --------EKKQLLLRVIKQEKLGNTIIFVRTK 255
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 186 LPKQRQNLMFSATFSDEI 203
>gi|171685013|ref|XP_001907448.1| hypothetical protein [Podospora anserina S mat+]
gi|170942467|emb|CAP68119.1| unnamed protein product [Podospora anserina S mat+]
Length = 604
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 141/295 (47%), Gaps = 40/295 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ G M+ ++K + P+ IQ P + G + Q+GSGKT AYL+P++
Sbjct: 139 SFETAGLHPAMLNNVKLAGYETPTPIQRYCLPAIKMGYDVVAVAQTGSGKTAAYLIPILN 198
Query: 329 RL--RQEEL-----------QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375
+L + ++L +G+ ++ P VVI+ P+ ELA QV + R +
Sbjct: 199 QLMGKAKKLAATRPNPAAFREGVDQAVRAEPLVVIVCPSRELAVQVFTEARKFCYRTM-L 257
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILFN 434
R V+ GG Q LQ+G DVLIA+PGR + F+ +L L +R +LDE D + +
Sbjct: 258 RPCVIYGGGPSSEQRAQLQKGCDVLIASPGRLIDFMDDTRLLTLRRVRYMVLDEADEMLH 317
Query: 435 DE---DFEVALQSLISSSPV---TAQYLFVTATLPVEIY----NKLVEVFPDCKVVMGPG 484
D+ DF+ + P+ +Y+ +AT P + N L E +V
Sbjct: 318 DDWKGDFDTIMSGGGELLPIQRGNVRYMLFSATFPKQFRDLAKNHLAETHVRLRVGRAGS 377
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
HR +++ + ETA NKKSAL+ L+E P ++TI+F N K
Sbjct: 378 THR---NIKQVVY------------ETAPFNKKSALIDLLESLPPTRTIIFVNSK 417
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 186 LPKQRQNLMFSATFSDEI 203
>gi|229521507|ref|ZP_04410926.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|417824458|ref|ZP_12471049.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|419829955|ref|ZP_14353441.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419832928|ref|ZP_14356390.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|421354161|ref|ZP_15804493.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|422307246|ref|ZP_16394411.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|422917142|ref|ZP_16951470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|423819816|ref|ZP_17716074.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423853148|ref|ZP_17719866.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423880572|ref|ZP_17723468.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423997559|ref|ZP_17740818.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|424016266|ref|ZP_17756107.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|424019207|ref|ZP_17759003.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|424624749|ref|ZP_18063221.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|424629251|ref|ZP_18067548.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|424633282|ref|ZP_18071392.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|424636373|ref|ZP_18074388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|424640310|ref|ZP_18078200.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|424648344|ref|ZP_18086014.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|443527168|ref|ZP_21093233.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
gi|229341605|gb|EEO06608.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|340048143|gb|EGR09066.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE48]
gi|341638535|gb|EGS63182.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02A1]
gi|395953286|gb|EJH63899.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-45]
gi|408014062|gb|EKG51743.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A1]
gi|408019673|gb|EKG57065.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-52A1]
gi|408024809|gb|EKG61897.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A1]
gi|408025337|gb|EKG62396.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55A1]
gi|408034628|gb|EKG71119.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A1]
gi|408057083|gb|EKG91949.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-51A1]
gi|408621540|gb|EKK94543.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408622563|gb|EKK95545.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408635749|gb|EKL07935.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408642909|gb|EKL14653.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408643117|gb|EKL14856.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408651572|gb|EKL22828.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408853491|gb|EKL93284.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02C1]
gi|408861066|gb|EKM00665.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55B2]
gi|408868702|gb|EKM08022.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59B1]
gi|443454574|gb|ELT18376.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-78A1]
Length = 397
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKQRQNLMFSATFSDEI 192
>gi|387816135|ref|YP_005431630.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381341160|emb|CCG97207.1| RNA helicase [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 443
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ ++ + Q + PS IQ A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFSSLGLSEQLVRATADQGYETPSPIQQQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + T PR +IL PT ELA+QV + SK VP ++ VV GG +
Sbjct: 62 RLAE------NPRTGKGPRALILTPTRELAAQVHDSVNLYSKY-VPTKAAVVFGGVKINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR M L ++ ++ + +LDE D + D F ++ +++
Sbjct: 115 QMMKLRKGLDVLVATPGRLMDLYQQNAVRFNEVEILVLDEADRML-DMGFIRDIRKILAL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LPAKRQNLLFSATFCNEI 191
>gi|398845416|ref|ZP_10602451.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398253579|gb|EJN38701.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 439
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSEQI 193
>gi|294084931|ref|YP_003551691.1| DEAD/DEAH box helicase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664506|gb|ADE39607.1| putative DEAD box ATP-dependent RNA helicase protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 651
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 115/214 (53%), Gaps = 6/214 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + + M+ +L R+ + P+ IQ M+ P ++ G I Q+G+GKT A+LLP++ +
Sbjct: 19 FADFDLPENMLGTLAREGLVVPTPIQQMSIPLLLLGHDLIGLAQTGTGKTAAFLLPLMTQ 78
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S + P+ +ILAPT ELA+Q+ +N LS + R + V GG R + Q
Sbjct: 79 LSYSP----SVRSGQPPKALILAPTRELANQISANLSRLS-ADMNIRHICVFGGARYEGQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ GVD+++ATPGR M L++ G + ILDE D + D F A++ + +S
Sbjct: 134 IRGLKRGVDIVVATPGRLMDLMERGSFDPSGITHWILDEADHML-DLGFYPAMKHISASL 192
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483
P Q + +AT+P EI E D + V P
Sbjct: 193 PADRQTMLFSATMPPEIEKLGNEFLTDPERVKAP 226
>gi|414070080|ref|ZP_11406069.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
gi|410807592|gb|EKS13569.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
Length = 434
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 135/271 (49%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + EL ST+ +P ++LAPT ELA Q+ +N R +K + + + GG
Sbjct: 62 KLVESEL-----STTNAPHALVLAPTRELAEQIANNFRDFAKH-TSLKVVSLFGGVSTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+EGVD+++ATPGR I+ G L L +++ +LDE D + D F +Q++I S
Sbjct: 116 QANALKEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRML-DMGFIEDMQNVIKS 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT P I +V ++V + + +E + +
Sbjct: 175 CAEERQILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERR----- 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +LI K + +VF N K
Sbjct: 230 -------KQELLSELIGKKNWQQVLVFVNMK 253
>gi|58038579|ref|YP_190543.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58000993|gb|AAW59887.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 793
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 137/274 (50%), Gaps = 22/274 (8%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R F +LG S+ ++ +++ + P+ IQA A P V++G + Q+G+GKT ++ LP+
Sbjct: 290 RPRFADLGLSEPIMRAIEELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPM 349
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+Q+L S++ + PR +IL PT ELA QV N + K + ++ GG
Sbjct: 350 LQKL------AGSRARARMPRSLILEPTRELALQVAENFKLYGKY-LRLTHALLIGGESM 402
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L GVDVLIATPGR + L G L L ++DE D + D F ++ ++
Sbjct: 403 AEQRDVLNRGVDVLIATPGRLLDLFGRGGLLLTQTSTLVIDEADRML-DMGFIPDIEKIV 461
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q LF +AT+ EI +L + F V + ++ +EE LV D+
Sbjct: 462 ALLPAHRQTLFFSATMAPEI-RRLADAFLRHPVEITVSRQSSVATTIEEALVIVPEDE-- 518
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +L+ + V IVFCN+K
Sbjct: 519 ----------KRRTLKKLLRRENVQSAIVFCNRK 542
>gi|325293690|ref|YP_004279554.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
gi|325061543|gb|ADY65234.1| dead-box ATP-dependent RNA helicase [Agrobacterium sp. H13-3]
Length = 500
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 143/273 (52%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 11 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 71 MLMKQADRPANRTT----RTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 125
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G DVL+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 126 QQLQLEKGTDVLVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 184
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 185 VPAKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 240
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS + ++P ++IVF K
Sbjct: 241 KTD----LLKKS-----LNENPDGRSIVFLRTK 264
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKQRQNLMFSATFSDEI 192
>gi|451971488|ref|ZP_21924707.1| ATP-dependent RNA helicase [Vibrio alginolyticus E0666]
gi|451932641|gb|EMD80316.1| ATP-dependent RNA helicase [Vibrio alginolyticus E0666]
Length = 522
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 110/197 (55%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S+ + R +IL PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----SRVRANQVRALILTPTRELAAQVQENVFMYSRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRML-DMGFIRDIRKILALL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKQRQNLLFSATFSDEI 192
>gi|32474767|ref|NP_867761.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
gi|32445306|emb|CAD75308.1| ATP-dependent RNA helicase [Rhodopirellula baltica SH 1]
Length = 452
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 133/276 (48%), Gaps = 31/276 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P++
Sbjct: 45 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPIL- 103
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E+L L P+ +++ PT ELA QV + L++ GVP V++GG
Sbjct: 104 ----EQLDSLEDCR--DPQAIVIVPTRELADQVAAEAERLAR-GVPTEIAVLSGGKNMNR 156
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 157 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 215
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 216 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 258
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
E + +K L L+++ + I+FC K
Sbjct: 259 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCRTK 294
>gi|254286146|ref|ZP_04961106.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
gi|150423815|gb|EDN15756.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae AM-19226]
Length = 397
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|452877593|ref|ZP_21954868.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
gi|452185681|gb|EME12699.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa VRFPA01]
Length = 447
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLAGELLRD 203
>gi|423196519|ref|ZP_17183102.1| hypothetical protein HMPREF1171_01134 [Aeromonas hydrophila SSU]
gi|404632256|gb|EKB28883.1| hypothetical protein HMPREF1171_01134 [Aeromonas hydrophila SSU]
Length = 459
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ G+D+L+ATPGR + L+ +G L L L +LDE D + D F V ++ ++ +
Sbjct: 116 NLDAIKLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRML-DMGFIVDIRRIMKA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI ++ D P + + P + + +Q + +
Sbjct: 175 LPAERQTLLFSATFSSEIKALADDLLSD------PTLIEVDPS------NTAAEQVTQRI 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 223 IQVDRERRRELLSHMIGRGNWQRVLVFVRTK 253
>gi|152986565|ref|YP_001346544.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
gi|150961723|gb|ABR83748.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PA7]
Length = 447
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGLHTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAAFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNAVQFARLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLAGELLRD 203
>gi|402821009|ref|ZP_10870569.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
gi|402510241|gb|EJW20510.1| hypothetical protein IMCC14465_18030 [alpha proteobacterium
IMCC14465]
Length = 481
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 139/276 (50%), Gaps = 32/276 (11%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG + ++ ++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP+I R
Sbjct: 3 FDELGLAPEIMTAINEAGYTTPTPIQAEAIPHVIAGRDVLGIAQTGTGKTASFTLPMIHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++G +K+ PR +IL PT ELA+QV N K +++++ GG Q
Sbjct: 63 L----MKGRAKAR--MPRTLILEPTRELAAQVADNFDVYGKNTKLTKALLI-GGVSFGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + G DVLIATPGR + ++ G + L + ++DE D + D F ++ ++
Sbjct: 116 EKAIMRGADVLIATPGRLLDHVERGGVLLRGVEVLVIDEADRML-DMGFIPDIERIVKLL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP------GLEEFLVDCSGDQ 503
P T Q LF +AT+P EI +L E F + P ++P + + LV S Q
Sbjct: 175 PFTRQTLFFSATMPPEI-TRLTEQF-----LSAPARVEVAPPSSTNKNVSQLLVSVSKAQ 228
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K L +L ++ V+ I+FCN+K
Sbjct: 229 ------------KLKTLKKLFDEEDVTNGIIFCNRK 252
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 13 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 71
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 72 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 126
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 127 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 185
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 186 LPKQRQNLMFSATFSDEI 203
>gi|417820813|ref|ZP_12467427.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|423952578|ref|ZP_17734292.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423982229|ref|ZP_17738074.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340038444|gb|EGQ99418.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE39]
gi|408660005|gb|EKL31036.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408665229|gb|EKL36048.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 397
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++GK + A Q+G+GKT + LP++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +++ +G R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 61 ----ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKQRQNLMFSATFSDEI 192
>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 605
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 112/198 (56%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG + +G R ++L PT ELA+QV N R+ +K + +S V+ GG
Sbjct: 62 RL----TQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKH-LDVKSTVIFGGVGMNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ ++ GVD+L+ATPGR + L ++G L L + +LDE D + D F ++ +++
Sbjct: 117 QIDRIKRGVDILVATPGRLLDLQQQGFLDLSKVEILVLDEADRML-DMGFIHDVKKVLAL 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 VPRDKQSLLFSATFSDEI 193
>gi|153212702|ref|ZP_01948359.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
gi|124116352|gb|EAY35172.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 1587]
Length = 397
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 136/276 (49%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++++ Q + P+ IQA A P V+ G+ + A Q+G+GKT + LP+IQ
Sbjct: 12 TFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPIIQ 71
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL STS SP R +IL PT ELA QV +N ++ +K RS VV GG
Sbjct: 72 RLLP------LASTSASPARHPVRALILTPTRELADQVAANVQAYAKH-TSLRSAVVFGG 124
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q L+ GV++LIATPGR + +++ L ++ +LDE D + D F LQ
Sbjct: 125 VDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRML-DMGFLPDLQ 183
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT EI KL + R +E + +
Sbjct: 184 RILNLLPAERQTLLFSATFSPEI-KKLASTY-----------LRNPQTIEVARSNSTATN 231
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ E A +K A+++LI + + IVFCN K
Sbjct: 232 VTQIVYEVAEGDKTGAVVKLIRDRGLKQVIVFCNSK 267
>gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
Length = 395
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 37/280 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ +I+S+ + P+ IQ A P +++G+ I A Q+G+GKT ++LP++
Sbjct: 2 SFTQLGLNEALIKSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPILD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + Q + R +IL PT ELA QV N + ++ S+ + GG ++
Sbjct: 62 RLMQGQTQRKKR-----IRALILVPTRELAIQVADNVKQYAQY-TELTSLAMYGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR + + + + + +LDE D + D F A+ +I
Sbjct: 116 QKQQLIDGVDVLVATPGRLLDMYAQRAVHFDEIEVVVLDEADRML-DMGFIEAINKIIQR 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS--------PGLEEFLVDCS 500
P AQ+L +ATL NK+ E+ K +G H IS + ++L+
Sbjct: 175 LPTEAQFLLFSATLS----NKVREL---AKTAVGEA-HEISIAAHQASKSNITQWLITVD 226
Query: 501 GDQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
DQ KSALL LI + + ++F K
Sbjct: 227 KDQ-------------KSALLSHLIHEYQWDQALIFIETK 253
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 136/275 (49%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++++L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQR
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L Q S S SP R +IL PT ELA QV N + + P RS VV GG
Sbjct: 78 LLQH------ASHSASPARHPVRALILTPTRELADQVADNVAAYCRF-TPLRSTVVFGGV 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 131 DMSPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F + V + + R + E E
Sbjct: 190 IINLLPKQRQNLLFSATFSPEI-KKLAASFQNNPVTI--EVARSNATAENVTQTIYKVDE 246
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K +F+ ++ L Q+ IVF N K
Sbjct: 247 AAKADAVSFIIRQRELKQV---------IVFSNTK 272
>gi|15641418|ref|NP_231050.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121591273|ref|ZP_01678569.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121727543|ref|ZP_01680655.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|147674915|ref|YP_001216964.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|153817750|ref|ZP_01970417.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|153821347|ref|ZP_01974014.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|227081578|ref|YP_002810129.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227117872|ref|YP_002819768.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229505017|ref|ZP_04394527.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229511313|ref|ZP_04400792.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229518431|ref|ZP_04407875.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229608021|ref|YP_002878669.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254848525|ref|ZP_05237875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255745787|ref|ZP_05419735.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262158933|ref|ZP_06030045.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|262169296|ref|ZP_06036988.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|298498514|ref|ZP_07008321.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|360035301|ref|YP_004937064.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|379741202|ref|YP_005333171.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|417813420|ref|ZP_12460077.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|417816285|ref|ZP_12462917.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|418332432|ref|ZP_12943366.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|418337176|ref|ZP_12946074.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|418343691|ref|ZP_12950475.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|418348844|ref|ZP_12953578.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|418354675|ref|ZP_12957396.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|419825886|ref|ZP_14349390.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421316168|ref|ZP_15766739.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|421321010|ref|ZP_15771567.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|421325005|ref|ZP_15775531.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|421328665|ref|ZP_15779179.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|421331689|ref|ZP_15782169.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|421335261|ref|ZP_15785728.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|421339154|ref|ZP_15789589.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|421347136|ref|ZP_15797518.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|421351170|ref|ZP_15801535.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|422891511|ref|ZP_16933888.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|422902722|ref|ZP_16937717.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|422906599|ref|ZP_16941429.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|422913183|ref|ZP_16947702.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|422925663|ref|ZP_16958688.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|423144985|ref|ZP_17132594.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|423149664|ref|ZP_17136992.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|423153477|ref|ZP_17140671.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|423156291|ref|ZP_17143395.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|423160116|ref|ZP_17147084.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|423164838|ref|ZP_17151592.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|423730969|ref|ZP_17704283.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423756947|ref|ZP_17712305.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423892657|ref|ZP_17726340.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423927434|ref|ZP_17730956.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424001983|ref|ZP_17745069.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|424006141|ref|ZP_17749121.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|424024159|ref|ZP_17763819.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|424027008|ref|ZP_17766621.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|424586282|ref|ZP_18025871.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|424590898|ref|ZP_18030333.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|424594984|ref|ZP_18034317.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|424598849|ref|ZP_18038042.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|424601586|ref|ZP_18040738.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|424606581|ref|ZP_18045540.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|424610409|ref|ZP_18049263.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|424613216|ref|ZP_18052019.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|424617030|ref|ZP_18055717.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|424621981|ref|ZP_18060504.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|424644955|ref|ZP_18082703.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|424652635|ref|ZP_18090111.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|424656538|ref|ZP_18093836.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|440709660|ref|ZP_20890317.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443503491|ref|ZP_21070470.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443507392|ref|ZP_21074176.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443511519|ref|ZP_21078174.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443515074|ref|ZP_21081601.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443518872|ref|ZP_21085282.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443523762|ref|ZP_21089989.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443531373|ref|ZP_21097388.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443535149|ref|ZP_21101042.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443538716|ref|ZP_21104571.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|449056110|ref|ZP_21734778.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
gi|9655903|gb|AAF94564.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546878|gb|EAX57035.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121630127|gb|EAX62530.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V52]
gi|126511688|gb|EAZ74282.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC 8457]
gi|126521165|gb|EAZ78388.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae B33]
gi|146316798|gb|ABQ21337.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|227009466|gb|ACP05678.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae M66-2]
gi|227013322|gb|ACP09532.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O395]
gi|229345146|gb|EEO10120.1| ATP-dependent RNA helicase [Vibrio cholerae RC9]
gi|229351278|gb|EEO16219.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229357240|gb|EEO22157.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229370676|gb|ACQ61099.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254844230|gb|EET22644.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MO10]
gi|255736862|gb|EET92259.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262022109|gb|EEY40818.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|262029118|gb|EEY47770.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|297542847|gb|EFH78897.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MAK 757]
gi|340042011|gb|EGR02977.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HCUF01]
gi|340042724|gb|EGR03689.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-49A2]
gi|341623276|gb|EGS48838.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48A1]
gi|341623497|gb|EGS49030.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-70A1]
gi|341624424|gb|EGS49921.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-40A1]
gi|341639620|gb|EGS64237.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HFU-02]
gi|341647245|gb|EGS71331.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-38A1]
gi|356419243|gb|EHH72801.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-06A1]
gi|356419329|gb|EHH72877.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-21A1]
gi|356424728|gb|EHH78127.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-19A1]
gi|356431693|gb|EHH84897.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-22A1]
gi|356432754|gb|EHH85951.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-23A1]
gi|356436105|gb|EHH89232.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-28A1]
gi|356441965|gb|EHH94841.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-32A1]
gi|356447583|gb|EHI00374.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43A1]
gi|356448499|gb|EHI01266.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-33A2]
gi|356453077|gb|EHI05740.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A1]
gi|356454277|gb|EHI06926.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-48B2]
gi|356646455|gb|AET26510.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794712|gb|AFC58183.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae IEC224]
gi|395920675|gb|EJH31497.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1041(14)]
gi|395921125|gb|EJH31945.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1032(5)]
gi|395923992|gb|EJH34803.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1038(11)]
gi|395930171|gb|EJH40920.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1042(15)]
gi|395932953|gb|EJH43696.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1046(19)]
gi|395937122|gb|EJH47845.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1048(21)]
gi|395944102|gb|EJH54776.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-20A2]
gi|395946196|gb|EJH56860.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46A1]
gi|395951615|gb|EJH62229.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-25]
gi|395960173|gb|EJH70554.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-56A2]
gi|395961352|gb|EJH71682.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-57A2]
gi|395964650|gb|EJH74853.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-42A1]
gi|395972076|gb|EJH81692.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-47A1]
gi|395975568|gb|EJH85055.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1030(3)]
gi|395977266|gb|EJH86681.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1047(20)]
gi|408008183|gb|EKG46193.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-39A1]
gi|408014375|gb|EKG52018.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41A1]
gi|408033764|gb|EKG70289.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1037(10)]
gi|408034000|gb|EKG70511.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1040(13)]
gi|408043335|gb|EKG79334.1| DEAD/DEAH box helicase family protein [Vibrio Cholerae CP1044(17)]
gi|408044633|gb|EKG80531.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1050(23)]
gi|408055276|gb|EKG90211.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A2]
gi|408609967|gb|EKK83343.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408625357|gb|EKK98270.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408638092|gb|EKL10073.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408656293|gb|EKL27390.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408657569|gb|EKL28648.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408846890|gb|EKL86969.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-37A1]
gi|408848066|gb|EKL88121.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A2]
gi|408871524|gb|EKM10761.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62B1]
gi|408879899|gb|EKM18842.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-69A1]
gi|439975249|gb|ELP51385.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443432223|gb|ELS74754.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-64A1]
gi|443436425|gb|ELS82548.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-65A1]
gi|443439694|gb|ELS89392.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-67A1]
gi|443443716|gb|ELS97002.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-68A1]
gi|443447921|gb|ELT04563.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-71A1]
gi|443450313|gb|ELT10590.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-72A2]
gi|443458456|gb|ELT25852.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-7A1]
gi|443461764|gb|ELT32822.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-80A1]
gi|443466305|gb|ELT40964.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-81A1]
gi|448263933|gb|EMB01172.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
Length = 397
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 3/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 2 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 62 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + +LDE D + D F ++ ++
Sbjct: 120 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML-DMGFLPDIRRILKL 178
Query: 449 SPVTAQYLFVTATLPVEI 466
P + Q L +AT EI
Sbjct: 179 LPESRQNLLFSATFSKEI 196
>gi|334366430|ref|ZP_08515362.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
Length = 473
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 114/199 (57%), Gaps = 8/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + ++ ++ + ++ P+ IQ A PP +EG+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ P + ++L PT ELA Q+ CR ++ R V+ GG Q+
Sbjct: 62 LL-----SARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARY-TDLRHCVIFGGVNQR 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ LQ GVD+L+ATPGR + LI +G + L ++R +LDE D + D F ++ ++
Sbjct: 116 PQVDALQRGVDLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRML-DMGFIHDIKRILP 174
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P +I
Sbjct: 175 LLPKERQTLFFSATMPSDI 193
>gi|254225316|ref|ZP_04918928.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
gi|125622157|gb|EAZ50479.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae V51]
Length = 397
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|170719840|ref|YP_001747528.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169757843|gb|ACA71159.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 439
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|372271032|ref|ZP_09507080.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 433
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD +++++ Q + PS IQ A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSDAILKAISDQGYDTPSPIQQQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + E ++ + RV+IL PT ELA+QV + + K + +S VV GG +
Sbjct: 62 RLSKGE-----RAKANQARVLILTPTRELAAQVADSVATYGKH-LQLKSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G D+LIATPGR + L + ++ NL +LDE D + D F ++ ++
Sbjct: 116 QMMALRKGADILIATPGRLLDLHSQNAVRFDNLEALVLDEADRML-DMGFIHDIKRILRL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPSKRQNLLFSATFSKDI 192
>gi|262191718|ref|ZP_06049893.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
gi|262032413|gb|EEY50976.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
Length = 397
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|183179390|ref|ZP_02957601.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|183012801|gb|EDT88101.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
Length = 397
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 5/201 (2%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ +F LG ++ ++ ++ + P+ IQA A P V+EG + A Q+G+GKT + LP
Sbjct: 3 SQITFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL Q G PR +ILAPT ELA+QV + R S+ RSMV+ GG
Sbjct: 63 ILHRLLNNPQQ---NRKPGRPRALILAPTRELAAQVEESVRLYSQH-TRLRSMVMFGGVN 118
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q L++ +D+L+ATPGR + +++ + L + +LDE D + D F ++ +
Sbjct: 119 INPQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRML-DMGFIRDIRKI 177
Query: 446 ISSSPVTAQYLFVTATLPVEI 466
IS PV Q L +AT EI
Sbjct: 178 ISLMPVERQTLLFSATFSDEI 198
>gi|153826995|ref|ZP_01979662.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
gi|149739156|gb|EDM53442.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-2]
Length = 397
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|357031714|ref|ZP_09093657.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
gi|356414944|gb|EHH68588.1| ATP-dependent RNA helicase [Gluconobacter morbifer G707]
Length = 573
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 136/273 (49%), Gaps = 26/273 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S +++++K + P+ IQA A P +++G + Q+G+GKT ++ LP++++
Sbjct: 64 FSELGLSAPIMQAIKELGYEHPTPIQAQAIPEILKGHDVLGVAQTGTGKTASFTLPMLEK 123
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 124 LSG------SRARARMPRSLILEPTRELALQVAENFKLYGKH-LRLTHALLIGGESMTDQ 176
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L G DVLIATPGR + L G L L ++DE D + D F ++ ++S
Sbjct: 177 REVLNRGADVLIATPGRLLDLFGRGGLLLTQTSLLVIDEADRML-DMGFIPDIEKIVSLL 235
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ +EE +V D+
Sbjct: 236 PPYRQTLFFSATMAPEI-RRLADAFLKHPVEITVSRPS--SVATTIEERVVIVPADE--- 289
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ AL +L+ V IVFCN+K
Sbjct: 290 ---------KRRALKKLLRHEDVQNAIVFCNRK 313
>gi|340616136|ref|YP_004734589.1| RNA helicase RhlE [Zobellia galactanivorans]
gi|339730933|emb|CAZ94197.1| RNA helicase RhlE [Zobellia galactanivorans]
Length = 433
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 142/279 (50%), Gaps = 33/279 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG + ++++++ Q + P+ IQ A P ++ K + Q+G+GKT A+ +P+I
Sbjct: 2 TFKDLGIALPILKAIEEQGYTNPTPIQEQAIPILLNKKDLLGVAQTGTGKTAAFSIPIIH 61
Query: 329 RLRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L Q T G R+ +I+ PT ELA Q+ N + SK ++ V+ GG +Q
Sbjct: 62 HLHNNPEQ-----TKGKRRIRTLIVTPTRELAIQIADNFTAYSKY-THVKNTVIFGGVKQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q+ L+ GVD LIATPGR + L+ + I+ L ++ +LDE D + D F ++ +I
Sbjct: 116 QRQVNALRNGVDALIATPGRLLDLMNQNIISLRDIEFVVLDEADQML-DMGFIHDIKKII 174
Query: 447 SSSPVTAQYLFVTATLP---VEIYNKLVEVFPDCKVVMGPGM---HRISPGLEEFLVDCS 500
+ P Q LF +AT+P VE+ L+ F +V + P ++ GL F V
Sbjct: 175 AKLPKQRQSLFFSATMPTSIVELSKTLLGAFE--RVTIKPQQATAEKVDQGL--FFV--- 227
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ LNK L+ LI + P +VF K
Sbjct: 228 -----------SKLNKPKLLVHLINERPSDSVLVFSRTK 255
>gi|255534886|ref|YP_003095257.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
gi|255341082|gb|ACU07195.1| ATP-dependent RNA helicase RhlE [Flavobacteriaceae bacterium
3519-10]
Length = 417
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 116/198 (58%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L D + ++L+ + + +P+ IQA A P +++G+ + Q+G+GKT A+ +P++Q
Sbjct: 2 NFTDLQLIDPIAKALQEEGYTQPTPIQAKAIPSILQGRDLLGTAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ ++ + + +IL PT ELA Q+ + + + + R++VV GG +Q
Sbjct: 62 NLTEKNIR------NNQIKALILTPTRELAIQIEESFNAYGRH-LRLRNLVVFGGVKQSG 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+L+ATPGR + I +GI+ L NL +LDE D + D F ++ +I
Sbjct: 115 QEAALKKGVDILVATPGRLLDFISQGIISLKNLEIFVLDEADRML-DMGFVHDVKRIIKL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT P EI
Sbjct: 174 LPPKRQTLFFSATFPDEI 191
>gi|417857754|ref|ZP_12502811.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
gi|338823758|gb|EGP57725.1| ATP-dependent RNA helicase [Agrobacterium tumefaciens F2]
Length = 491
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 143/273 (52%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISRM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLSHSYLTDPVKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS + ++P + IVF K
Sbjct: 233 KTD----LLKKS-----LNENPDGRAIVFLRTK 256
>gi|333909234|ref|YP_004482820.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333479240|gb|AEF55901.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 457
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 113/200 (56%), Gaps = 7/200 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ Q + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTKLGLSAPILKAIEEQGYTEPSPIQAQAIPAVLEGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L L + S R ++L PT ELA+QV + ++ + +P +S VV GG +
Sbjct: 62 KLSAGPL-----AKSNQVRALVLTPTRELAAQVAESVKNYGQH-LPLKSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G DVLIATPGR + L + L+ L ILDE D + D F ++ +++
Sbjct: 116 QMMALRRGADVLIATPGRLLDLYNQNALKFDQLEVLILDEADRML-DMGFIHDIKKVLAI 174
Query: 449 SPVTAQYLFVTATLPVEIYN 468
P Q L +AT EI +
Sbjct: 175 LPKKRQNLLFSATFSPEIRD 194
>gi|359448696|ref|ZP_09238216.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20480]
gi|358045506|dbj|GAA74465.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20480]
Length = 433
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LPVIQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKGVLASAQTGTGKTAAFALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + +L ST+ +P ++LAPT ELA Q+ +NC+ +K + + + GG
Sbjct: 62 KLIESDL-----STTNAPTALVLAPTRELAEQIANNCKEYAKH-TSLKVVSLFGGVNTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+ GVD+++ATPGR + I+ G L L N++ +LDE D + D F +Q++I S
Sbjct: 116 QENALKAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRML-DMGFITDMQTVIKS 174
Query: 449 SPVTAQYLFVTATLPVEI 466
Q L +AT P I
Sbjct: 175 CADDRQILLFSATFPAAI 192
>gi|297578974|ref|ZP_06940902.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
gi|297536568|gb|EFH75401.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae RC385]
Length = 398
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|9955400|dbj|BAB12216.1| vasa homolog [Ciona savignyi]
Length = 688
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 6/202 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ G + ++ ++KR N+ RP+ +Q + P + + + Q+GSGKT A+LLPV+
Sbjct: 232 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 291
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L LQ S +PR +++ PT EL Q+ R S+ G R +V GG
Sbjct: 292 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSR-GTVVRPVVAYGGTSMNH 350
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +LQ G +LIATPGR M I G++ L ++ ILDE D + D FE ++ L SS
Sbjct: 351 QIRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRML-DMGFETEIRKLASS 409
Query: 449 ----SPVTAQYLFVTATLPVEI 466
S L +AT P EI
Sbjct: 410 PGMPSKSDRHTLMFSATFPDEI 431
>gi|431804583|ref|YP_007231486.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
gi|430795348|gb|AGA75543.1| DEAD/DEAH box helicase [Pseudomonas putida HB3267]
Length = 443
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSEQI 193
>gi|119468751|ref|ZP_01611803.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family [Alteromonadales bacterium TW-7]
gi|119447807|gb|EAW29073.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family [Alteromonadales bacterium TW-7]
Length = 433
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LPVIQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + +L ST+ +P ++LAPT ELA Q+ +NC+ +K + + + GG
Sbjct: 62 KLIESDL-----STTNAPTALVLAPTRELAEQIANNCKEYAK-HTSLKVVSLFGGVNTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+ GVD+++ATPGR + I+ G L L N++ +LDE D + D F +Q++I S
Sbjct: 116 QENALKAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRML-DMGFITDMQTVIKS 174
Query: 449 SPVTAQYLFVTATLPVEI 466
Q L +AT P I
Sbjct: 175 CADDRQILLFSATFPAAI 192
>gi|117619321|ref|YP_856922.1| ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560728|gb|ABK37676.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 461
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ G+D+L+ATPGR + L+ +G L L L +LDE D + D F V ++ ++ +
Sbjct: 116 NLDAIKLGIDILVATPGRLLDLLTQGALTLSELEVLVLDEADRML-DMGFIVDIRRIMKA 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAERQTLLFSATFSSEI 192
>gi|300023857|ref|YP_003756468.1| DEAD/DEAH box helicase [Hyphomicrobium denitrificans ATCC 51888]
gi|299525678|gb|ADJ24147.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 540
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 137/277 (49%), Gaps = 27/277 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F +LG S + ++ ++ P+ IQA A P + G+ + Q+G+GKT +++LP+I
Sbjct: 4 KTFADLGLSPKVQAAVMAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMI 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFR 385
RL ++ + PR +ILAPT ELA+QV +S K G + V + GG
Sbjct: 64 TRLE------TGRARARMPRSLILAPTRELAAQV---AQSFEKYGTNHKLSVALLIGGVS 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q++ L GVDVLIATPGR + G + L+ + ++DE D + D F ++ +
Sbjct: 115 MDDQVKKLDRGVDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRML-DMGFIPDIEKI 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGD 502
P Q LF +AT+P EI +LV+ F P V P + + + V C
Sbjct: 174 CKLLPPRRQTLFFSATMPPEI-TRLVDQFLKDPTRIEVAKPAT--TAKTITQRFVYCQNG 230
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++ K+ L +LI V I+FCN+K
Sbjct: 231 ED---------WAKREMLRELIRDGNVKNAIIFCNRK 258
>gi|422922704|ref|ZP_16955883.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
gi|341645192|gb|EGS69342.1| DEAD/DEAH box helicase family protein [Vibrio cholerae BJG-01]
Length = 398
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAVQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 599
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 112/198 (56%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QG + +G R ++L PT ELA+QV N R+ +K + +S V+ GG
Sbjct: 62 RL----TQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKH-LDVKSTVIFGGVGMNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ ++ GVD+L+ATPGR + L ++G L L + +LDE D + D F ++ +++
Sbjct: 117 QIDRIKRGVDILVATPGRLLDLQQQGFLDLSRVEILVLDEADRML-DMGFIHDVKKVLAL 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 VPRDKQSLLFSATFSDEI 193
>gi|343509249|ref|ZP_08746533.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342805016|gb|EGU40296.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
Length = 399
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 142/275 (51%), Gaps = 29/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++L + + +P+ IQ A P +++G+ + A Q+G+GKT ++LP++++
Sbjct: 3 FSKLGLSQPITDALTKLGYNKPTSIQIKAIPEILKGQDLLAAAQTGTGKTAGFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E Q + R +IL PT ELA QV R + +P S+ + GG +K+Q
Sbjct: 63 LSKGETQRKKRI-----RALILTPTRELACQVEEKVRDYGQ-NLPLTSLAMYGGVDEKSQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR + L + + + +LDE D + D F + ++
Sbjct: 117 KQALIEGVDVLVATPGRLLDLYGQHAVHFDEVEVLVLDEADRML-DMGFIEDINKILDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q+L +ATL NK+ E+ V P F + + +Q S K+
Sbjct: 176 PTDIQHLLFSATLS----NKVRELAKTA--VYNP-----------FEISIAANQASKKSI 218
Query: 510 ETAFL----NKKSALL-QLIEKSPVSKTIVFCNKK 539
E + +KKSALL LI+++ +T++F K
Sbjct: 219 EQWLISVDKDKKSALLSHLIKENDWDQTLIFIETK 253
>gi|427431569|ref|ZP_18920912.1| ATP-dependent RNA helicase [Caenispirillum salinarum AK4]
gi|425877717|gb|EKV26448.1| ATP-dependent RNA helicase [Caenispirillum salinarum AK4]
Length = 832
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 143/277 (51%), Gaps = 32/277 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + + +++ + P+ IQ A P V+ + + Q+G+GKT ++ LP+I
Sbjct: 2 TFSDLGLTPETLRAIEDVGYNEPTPIQEQAIPYVLMCRDVLGIAQTGTGKTASFTLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q ++ + PR +ILAPT ELASQV N + K ++++ GG K
Sbjct: 62 ILAQ------GRAKARMPRSLILAPTRELASQVAENFKLYGKYHKLAMALLI-GGESFKE 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L +GVDVLIATPGR M L G + L +++ ++DE D + D F ++ ++S
Sbjct: 115 QEAALDKGVDVLIATPGRLMDLFDRGRILLQDVKILVIDEADRML-DMGFIPDVERIVSF 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG------LEEFLVDCSGD 502
P Q LF +AT+ +I KL + F +M P R+SP +++ LV D
Sbjct: 174 LPKIRQTLFFSATMDAQI-RKLADAF-----LMNPKEIRVSPKTSTAATVKQALVIV--D 225
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
Q +K+ AL +L++K V +FCN+K
Sbjct: 226 QH----------DKRRALRELLDKEDVRNAFIFCNRK 252
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 113/197 (57%), Gaps = 6/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG S ++ +++ Q + + IQ A P V++GK + Q+G+GKT + LPV+QR
Sbjct: 3 FKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ +G + PRV++L PT ELA+QV + R + +PFRS V+ GG Q
Sbjct: 63 LQSSHAEGQKR----HPRVLVLTPTRELAAQVHESVRDYGRF-LPFRSAVIFGGVSINPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDV++ATPGR + +++ + L + +LDE D + D F ++ ++++
Sbjct: 118 KQKLIKGVDVVVATPGRLLDHLQQRSIDLSKVEVLVLDEADRML-DMGFIRDIRKVLNAI 176
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 PKKRQTLLFSATFSKEI 193
>gi|83594050|ref|YP_427802.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|386350803|ref|YP_006049051.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
gi|83576964|gb|ABC23515.1| DEAD/DEAH box helicase [Rhodospirillum rubrum ATCC 11170]
gi|346719239|gb|AEO49254.1| DEAD/DEAH box helicase [Rhodospirillum rubrum F11]
Length = 799
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 140/276 (50%), Gaps = 30/276 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S + +++ + P+ IQ A P V G+ + Q+G+GKT ++ LP+I
Sbjct: 2 TFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ K+ + PR +ILAPT ELA+QV N K ++++ GG
Sbjct: 61 -----DILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLI-GGESMNE 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L GVDVLIATPGR + L + G + L +++ ++DE D + D F ++ +++
Sbjct: 115 QQKVLDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRML-DMGFIPDVERIVAL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+ EI +L + F +M P RI P Q+ +T
Sbjct: 174 LPKIRQTLFFSATMDKEI-RRLADAF-----LMNPKEVRIEP-----------TQKVAET 216
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
E A + K+ AL QL+ + V+ +FCN+K
Sbjct: 217 VEQALIMVKASEKREALRQLLRRETVTNAFIFCNRK 252
>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
Length = 464
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 21/205 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++E++ +Q + PS IQA A P V+EGK + A Q+G+GKT + LPV++
Sbjct: 2 SFASLGLSAPILEAVAKQGYETPSPIQAQAIPAVIEGKDVMAAAQTGTGKTAGFTLPVLE 61
Query: 329 RLRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381
RL S PRV ++L PT ELA+QV + +L +P S VV
Sbjct: 62 RL------------SNGPRVKPNQVRALVLTPTRELAAQVAESV-ALYAKNLPLSSAVVF 108
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG + Q+ L++G DVL+ATPGR + L + ++ L +LDE D + D F
Sbjct: 109 GGVKINPQMMRLRQGADVLVATPGRLLDLYNQRAVRFDQLEVLVLDEADRML-DMGFIRD 167
Query: 442 LQSLISSSPVTAQYLFVTATLPVEI 466
++ L++ P Q L +AT EI
Sbjct: 168 IRKLLAVMPKQRQNLLFSATFSDEI 192
>gi|167035770|ref|YP_001671001.1| DEAD/DEAH box helicase [Pseudomonas putida GB-1]
gi|166862258|gb|ABZ00666.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida GB-1]
Length = 443
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|163759551|ref|ZP_02166636.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
gi|162283148|gb|EDQ33434.1| ATP dependent RNA helicase protein [Hoeflea phototrophica DFL-43]
Length = 509
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 139/280 (49%), Gaps = 35/280 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ ++ + P+ IQA A PP +E + + Q+G+GKT +++LP++
Sbjct: 3 TFADLGLSQKVLSAVTDAGYTTPTPIQAGAIPPALERRDILGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--TGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G R +V GG
Sbjct: 63 MLER------GRARARMPRTLILEPTRELAAQVHEN---FEKYGKNHRLNIVLLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L + + ++DE D + D F ++ ++
Sbjct: 114 EEQYRKLERGADVLIATPGRLLDHTERGKLLMTGVELLVIDEADRML-DMGFIPDIERIV 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP------GLEEFLVDCS 500
P T Q LF +AT+P EI KL + F + P ++P + + LV CS
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-QKLADKF-----LQNPARIEVAPPSSTAATVTQKLVACS 226
Query: 501 GDQESDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKK 539
G K+ L LI ++ ++ I+FCN+K
Sbjct: 227 GKD----------FEKRERLRDLIRSQTDLTNAIIFCNRK 256
>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
Length = 414
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 134/270 (49%), Gaps = 18/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D++ ++L + + P+ IQ A P ++EG + Q+G+GKT A+ LPV+QR
Sbjct: 3 FSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + G + R ++L PT ELA Q+ + + + + V+ GG Q Q
Sbjct: 63 LHQSRMHGEKRKI----RCLVLTPTRELAIQIGESFTAYGR-HTGLINTVIFGGVNQNPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L GVD+L+ATPGR + LI +G L L ++ +LDE D + D F ++ +++
Sbjct: 118 TARLVRGVDILVATPGRLLDLIGQGHLHLRDIEYFVLDEADRML-DMGFIHDIRRVLAVL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + + K VM ++P V + + + +
Sbjct: 177 PKKRQSLFFSATMPPEIIKLSAAILHNPKEVM------VTP------VSSTVEIINQQIL 224
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK S L L+++ + +VF K
Sbjct: 225 FVDRENKNSLLAHLLKERNIESALVFTRTK 254
>gi|148549843|ref|YP_001269945.1| DEAD/DEAH box helicase [Pseudomonas putida F1]
gi|148513901|gb|ABQ80761.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida F1]
Length = 443
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|429887177|ref|ZP_19368702.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
gi|429225829|gb|EKY32027.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
Length = 398
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKR-----IRALILVPTRELAVQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|395445596|ref|YP_006385849.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
gi|421523851|ref|ZP_15970480.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|388559593|gb|AFK68734.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
gi|402752837|gb|EJX13342.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 443
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 423
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 113/204 (55%), Gaps = 10/204 (4%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S++++ +L NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+IQRL + + + +P++V +L PT ELA QV N S +K G + +V G
Sbjct: 64 IIQRLIETK-----DNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAK-GTDIKVVVAYG 117
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G K Q ENL+ G D+L+ATPGR + + + L + +LDE D + D F +
Sbjct: 118 GVSMKVQTENLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRML-DMGFMPDI 176
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ ++S Q LF +AT +I
Sbjct: 177 KRILSRMNEVRQTLFFSATFDNKI 200
>gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 427
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + +P+ +QA A P +++G + A Q+G+GKT + LP+++
Sbjct: 2 SFDSLGLSAVLLRAVAEQGYSKPTPVQAQAIPAILQGGDVMAAAQTGTGKTAGFTLPMLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +G + R +IL PT ELA+QV + ++ +P ++ V+ GG
Sbjct: 62 RLSQNRPEGGRRRV----RALILTPTRELAAQVRDSVKTYG-GKLPLKTAVIFGGVGMNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVD+++ATPGR + + +G + L + +LDE D + D F ++ +I++
Sbjct: 117 QIQTLRRGVDIVVATPGRLLDHMGQGTVDLSGVEMLVLDEADRML-DMGFIRDIRRVIAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + GM R +E + + + + +
Sbjct: 176 VPKQRQTLMFSATFSKEIRQ------------LAEGMLRNPTQIEVAARNTAAENVNQRV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K++ L LI+ + +VF K
Sbjct: 224 HPVSRGEKRALLSNLIQDGDWRQVLVFTRTK 254
>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
gi|215919015|ref|NP_819700.2| ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493]
gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
Length = 420
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 3/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ +++ Q ++ P+ +Q A P +++ + ++ Q+G+GKT + LP++Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L +S R +IL PT ELA QV R+ K +P ++ VV GG K
Sbjct: 71 RLFVSR-PPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKY-LPLKATVVHGGVSIKP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ GVD+L+ATPGR + L+ +G+L L + +LDE D + D F ++ ++
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML-DMGFLPDIRRILKL 187
Query: 449 SPVTAQYLFVTATLPVEI 466
P + Q L +AT EI
Sbjct: 188 LPESRQNLLFSATFSKEI 205
>gi|218295270|ref|ZP_03496106.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
gi|218244473|gb|EED10998.1| DEAD/DEAH box helicase domain protein [Thermus aquaticus Y51MC23]
Length = 513
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 119/214 (55%), Gaps = 13/214 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
FK+ D + E+L + P+ IQA A P +EGK I ++G+GKTLA+ LP+ Q
Sbjct: 2 EFKDFPLKDEIKEALYGRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV-VTGGFRQK 387
RL S+ PR ++L PT ELA QV S +L+ P +V V GG
Sbjct: 62 RLEA------SRQRGRKPRALVLTPTRELALQVASEVAALA----PHLKVVPVYGGTGYG 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q E LQ+G DV++ATPGR + +++G+L L + A+LDE D + + FE ++++++
Sbjct: 112 KQKEELQKGADVVVATPGRALDYLRQGVLDLSEVEIAVLDEADEMLS-MGFEEEVEAILA 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481
++P + Q L +ATLP +L E + VV+
Sbjct: 171 ATPPSRQTLLFSATLPT-WARRLAERYMKSPVVI 203
>gi|407685080|ref|YP_006800254.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
gi|407246691|gb|AFT75877.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'English Channel 673']
Length = 483
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 117/199 (58%), Gaps = 9/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG+ R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLK 173
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 174 LLPQERQSLLFSATFSDEI 192
>gi|390945687|ref|YP_006409447.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390422256|gb|AFL76762.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 473
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 114/199 (57%), Gaps = 8/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + ++ ++ + ++ P+ IQ A PP +EG+ + Q+G+GKT A+ LP++Q
Sbjct: 2 TFKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++ P + ++L PT ELA Q+ CR ++ R V+ GG Q+
Sbjct: 62 LL-----SARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARY-TDLRHCVIFGGVNQR 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ LQ G+D+L+ATPGR + LI +G + L ++R +LDE D + D F ++ ++
Sbjct: 116 PQVDALQRGIDLLVATPGRLLDLIGQGYVSLSDIRFFVLDEADRML-DMGFIHDIKRILP 174
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P +I
Sbjct: 175 LLPKERQTLFFSATMPSDI 193
>gi|329115283|ref|ZP_08244038.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
gi|326695726|gb|EGE47412.1| ATP-dependent RNA helicase RhlE [Acetobacter pomorum DM001]
Length = 488
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 144/274 (52%), Gaps = 25/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++L Q + P+ IQ + P +++G+ + Q+G+GKT ++ LP+++
Sbjct: 52 FSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPILEH 111
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ +T PRV++LAPT EL +Q+ + ++ ++ + F VV GG Q Q
Sbjct: 112 L----IKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYAR-HMKFTQAVVFGGVGQGRQ 166
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E ++ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ +++
Sbjct: 167 VEAMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRML-DMGFVRDIRRIMTFV 225
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P I + + D +V + P + RI + V+ +GD
Sbjct: 226 PEQRQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAV--MFVNGAGD--- 280
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ ALL ++E VS+ +VF K
Sbjct: 281 ----------KRDALLNMVESPKVSRAVVFTLMK 304
>gi|386014015|ref|YP_005932292.1| DEAD/DEAH box helicase [Pseudomonas putida BIRD-1]
gi|397697647|ref|YP_006535530.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
gi|313500721|gb|ADR62087.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida BIRD-1]
gi|397334377|gb|AFO50736.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
Length = 443
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
Length = 745
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 136/274 (49%), Gaps = 16/274 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G D ++++K+ N+ RP+ +Q + P V+ G+ + Q+GSGKT A+LLPV+
Sbjct: 299 NFDDAGLYDTFLKNVKKSNYDRPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLPVLT 358
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L G S S P+ +++APT ELA Q+ ++ + + G R +V+ GG
Sbjct: 359 GMMNNGLTGSSFSVVQEPQALVVAPTRELAVQIFTDAKRFTH-GTMLRPVVLYGGTSLGH 417
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSL 445
QL N+++G +++ TPGR + +I +G + L L+ ILDE D + + + + + L
Sbjct: 418 QLRNVEQGAHIVVGTPGRLIDVIGKGKVSLEKLKYLILDEADRMLDMGFGPEIKKIVHEL 477
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ Q L +AT P EI E D + + + +++ + DQ
Sbjct: 478 GAPPKEQRQTLMFSATFPEEIQRLAAEFLNDYLFLTVGRVGGACTDVAQYVHEVPRDQ-- 535
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L ++ +S KT+VF +K
Sbjct: 536 ----------KRQKLCDILSESGTDKTLVFVEQK 559
>gi|296283706|ref|ZP_06861704.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 461
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 112/200 (56%), Gaps = 8/200 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++L + + P+ IQA A PPV+EG+ + Q+G+GKT A++LP I R
Sbjct: 4 FTDLGLSQPVLQALDMKGYSEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
LR+ E Q KS R+++LAPT ELA Q+ + + G+ +S+V GG
Sbjct: 64 LREAENQTPFKSC----RMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIV--GGTSVNK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L G D+L+ATPGR + LI + L + +LDE D + D F AL+ +
Sbjct: 118 DRNKLHRGTDILVATPGRLLDLIDQRAFTLDKVEILVLDEADQML-DLGFIHALRKINEL 176
Query: 449 SPVTAQYLFVTATLPVEIYN 468
+P T Q LF +AT+P I +
Sbjct: 177 TPKTRQTLFFSATMPKAIKD 196
>gi|170690407|ref|ZP_02881574.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170144842|gb|EDT13003.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 481
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 112/198 (56%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNMRDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG + S S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLGQ---QGPAVS-SNRARVLVLVPTRELAEQVLQSFIDYGK-GLDLRFLAAYGGVSVNP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELNAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPAERQTLLFSATFTDDI 193
>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
Length = 770
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 107/202 (52%), Gaps = 6/202 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ G + ++ ++KR N+ RP+ +Q + P + + + Q+GSGKT A+LLPV+
Sbjct: 314 TFEVAGLPETVLANVKRANYERPTPVQKYSIPIINADRDLMACAQTGSGKTAAFLLPVLT 373
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L LQ S +PR +++ PT EL Q+ R S+ G R +V GG
Sbjct: 374 KLITNGLQSSQFSEKQTPRAIVVGPTRELIYQIFLEARKFSR-GTVVRPVVAYGGTSMNH 432
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +LQ G +LIATPGR M I G++ L ++ ILDE D + D FE ++ L SS
Sbjct: 433 QIRDLQRGCHILIATPGRLMDFINRGLVGLDHVEFVILDEADRML-DMGFETEIRKLASS 491
Query: 449 ----SPVTAQYLFVTATLPVEI 466
S L +AT P EI
Sbjct: 492 PGMPSKSDRHTLMFSATFPDEI 513
>gi|193666978|ref|XP_001948493.1| PREDICTED: probable ATP-dependent RNA helicase DDX5-like
[Acyrthosiphon pisum]
Length = 666
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 134/272 (49%), Gaps = 16/272 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+ DY+ +K+Q F P+ IQA+++P + G++ + Q+GSGKTLAY+LP I
Sbjct: 123 NFNEVILPDYVFNEVKKQGFNNPTPIQAVSWPIALSGRNMVGIAQTGSGKTLAYMLPAIL 182
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + P V++LAPT ELA Q+ S R+ V GG +
Sbjct: 183 HINHQP----RLLRYDGPIVLVLAPTRELAQQIQQVAVSFGTSTF-VRNTCVFGGAPKGP 237
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++L+ GV+++IATPGR + ++ L +LDE D + D FE ++ +I
Sbjct: 238 QVDDLERGVEIVIATPGRLIDFLERNTTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 296
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE-EFLVDCSGDQESDK 507
Q L +AT P E+ N L E F D + + G +S +VD D E ++
Sbjct: 297 IRPDRQVLMWSATWPPEVKN-LAEEFLDDYIQVNVGSLNLSANHNISQVVDVCDDYEKEQ 355
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K ALL I P +KTI+F K
Sbjct: 356 --------KLYALLTDIFSQPDNKTIIFVETK 379
>gi|254249566|ref|ZP_04942886.1| Helicase [Burkholderia cenocepacia PC184]
gi|124876067|gb|EAY66057.1| Helicase [Burkholderia cenocepacia PC184]
Length = 505
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+R N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 24 SFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 83
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 84 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 138
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 139 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELDAVFAA 197
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 198 LPAKRQTLLFSATFSDEI 215
>gi|339489487|ref|YP_004704015.1| DEAD/DEAH box helicase [Pseudomonas putida S16]
gi|338840330|gb|AEJ15135.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida S16]
Length = 443
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|349685730|ref|ZP_08896872.1| RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 446
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYATPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ + K R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREKGRAHPKGA----RALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ ++++
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEADRML-DMGFVRDIRKIVAA 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + D P +++P + D+
Sbjct: 177 LPTDRQTLLFSATMPKTISDLAHGLLRD------PATVQVTPP------SSTVDRIRQAV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ AL L++ V + +VF K
Sbjct: 225 MFVDTGNKREALKLLVDSPKVERAVVFTLMK 255
>gi|158294546|ref|XP_315671.4| AGAP005652-PA [Anopheles gambiae str. PEST]
gi|157015613|gb|EAA11703.5| AGAP005652-PA [Anopheles gambiae str. PEST]
Length = 728
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/336 (29%), Positives = 155/336 (46%), Gaps = 42/336 (12%)
Query: 231 IDRGWRSGGSIHNLQYEPTD-CPKQRHKYS----------ADGDFFSRK----------- 268
DR ++G ++ N+++EP D P +++ Y +D D + K
Sbjct: 48 FDRQSQNGKNLRNVKWEPEDLTPFEKNFYQPSAGLMGLSVSDIDSYLDKHQITLKGRDVP 107
Query: 269 ----SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F++ G Y++E LKRQ F +P+ IQA P + G+ + Q+GSGKTLAY++
Sbjct: 108 RPSMEFEDGGLPVYIMEELKRQGFAKPTAIQAQGMPIALSGRDMVGIAQTGSGKTLAYVV 167
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P + ++ Q + G P +ILAPT ELA Q+ V + V GG
Sbjct: 168 PSLVHIQH---QATIRRGDG-PIALILAPTRELAQQIQQVATDFGSR-VSANNTCVFGGA 222
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+ +L+ G +++IATPGR + ++ GI L +LDE D + D FE ++
Sbjct: 223 PKGPQIRDLERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRML-DMGFEPQIRK 281
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQ 503
++ Q L +AT P E+ N L E F + + G +S +VD D
Sbjct: 282 IMGQIRPDRQVLMWSATWPKEVRN-LAEEFLADYIQINIGSLNLSANHNILQIVDVCEDY 340
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E D+ K LL I P +KTI+F K
Sbjct: 341 EKDQ--------KLMKLLTEISAEPDTKTIIFVETK 368
>gi|170736938|ref|YP_001778198.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169819126|gb|ACA93708.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 483
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+R N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLQRLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELDAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 LPAKRQTLLFSATFSDEI 193
>gi|254284072|ref|ZP_04959040.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
gi|219680275|gb|EED36624.1| cold-shock deAd-box protein a [gamma proteobacterium NOR51-B]
Length = 598
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 10/197 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D+++++L + PS IQ+M PP+++G + Q+G+GKT A+ LPV+ R
Sbjct: 10 FDELRLPDFLLKALADVGYESPSAIQSMTIPPLLDGHDLVGQAQTGTGKTAAFALPVLAR 69
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + +G P+ ++L PT ELA QV + ++ F+ + + GG +TQ
Sbjct: 70 L---------DTKAGGPQALVLTPTRELAIQVAEAFQKYARYSKGFKVVPIYGGSDYRTQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L LQ GV +++ TPGR M ++ G L L +L+ +LDE D + F ++ ++ +
Sbjct: 121 LRQLQRGVHIIVGTPGRVMDHMRRGSLDLSSLKTLVLDEADEMLR-MGFIDDVEWILEQT 179
Query: 450 PVTAQYLFVTATLPVEI 466
P T Q +AT+P I
Sbjct: 180 PATRQIALFSATMPDAI 196
>gi|218132094|ref|ZP_03460898.1| hypothetical protein BACEGG_03721 [Bacteroides eggerthii DSM 20697]
gi|217985744|gb|EEC52085.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 392
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 117/195 (60%), Gaps = 8/195 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L ++ ++++++ + ++ P+ IQA A P ++ GK + Q+G+GKT A+ +P+IQ
Sbjct: 22 TFKDLNITESILKAIEEKGYVNPTPIQAKAIPALLVGKDILGCAQTGTGKTAAFAIPIIQ 81
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ + KS + S + +IL PT ELA Q+ S C R V+ GG Q+T
Sbjct: 82 QLQAD------KSLNNSIKALILTPTRELALQI-SECIDDYAKYTQVRHGVIFGGVNQRT 134
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L+ +G ++L N++ +LDE D + D F ++ L+
Sbjct: 135 QVNMLHKGVDILVATPGRLLDLMNQGYVRLNNIQHFVLDEADRML-DMGFIHDIKRLLPK 193
Query: 449 SPVTAQYLFVTATLP 463
P Q L +AT+P
Sbjct: 194 LPKEKQTLLFSATMP 208
>gi|393722521|ref|ZP_10342448.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26605]
Length = 426
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 138/273 (50%), Gaps = 18/273 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +L + ++ +L Q + P+ IQA + P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 QTFADLALAPRLLRALDEQGYTTPTPIQAQSIPLLLEGRDMLGMAQTGTGKTAAFALPLL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + RV++LAPT EL SQ+ + S + +P R + GG Q
Sbjct: 63 HRLAANP----RPAPKHGARVLVLAPTRELVSQIAAGFESFGR-HMPLRVATIFGGVSQF 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L GVD+++A PGR + LI++G+ L L +LDE D + D F ++ L++
Sbjct: 118 HQVNALDAGVDIIVAAPGRLLDLIEQGLCDLSALEALVLDEADQML-DMGFAKPIERLVA 176
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ P L +AT+P I L E ++ P I+P + D+ +
Sbjct: 177 TLPKDRHTLLFSATMPKAI-TALAE-----SLLRDPAHVEIAPP------STTVDRIAQS 224
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+KK+ALL+L+ + + +VF +K+
Sbjct: 225 VMFLDAAHKKAALLELLRTPEIGQAVVFTLQKN 257
>gi|339017995|ref|ZP_08644139.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752884|dbj|GAA07443.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 436
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++++L + + P+ IQA + P ++ G+ + Q+G+GKT A+ LP++
Sbjct: 3 TFSDLKLAEPLLKALAEEGYENPTPIQAQSIPHLLAGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L+ + RV+ILAPT EL SQ+ + ++ ++ + F VV GG Q
Sbjct: 63 HL----LKNPKPAGPKKARVLILAPTRELVSQISESFKAYARH-MKFTQAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E ++ GVDVL+A PGR + LI +G + L L +LDE D + D F ++ +++
Sbjct: 118 QVEAMRRGVDVLVAAPGRLLDLIGQGYIDLSALEVLVLDEADRML-DMGFVRDIRRIMTF 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP---GMHRISPGLEEFLVDCSGDQE 504
P Q L +AT+P I + + D KV + P + RI + VD S
Sbjct: 177 LPAKRQTLLFSATMPRSIADLASSLLHDPAKVEVTPPSSTVDRIQQAV--MFVDGS---- 230
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ ALL L+E V + +VF K
Sbjct: 231 ----------NKRDALLTLVESPKVVRAVVFTLMK 255
>gi|26991447|ref|NP_746872.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|24986522|gb|AAN70336.1|AE016675_6 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
Length = 443
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 115/198 (58%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L++ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K S S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVASNSIRALVLVPTRELAEQVHNNVREYAE-NLPLTTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQS+ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRML-DLGFAEELQSVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 120/214 (56%), Gaps = 12/214 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++ +L+R+ + +P+ +QA A P +++G + Q+G+GKT A+ LP++Q
Sbjct: 4 FSDLGLSPTLLMTLEREGYEKPTPVQAQAIPYLLKGHDLLGIAQTGTGKTAAFALPILQH 63
Query: 330 LRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L LS SP++V IL+PT ELASQ+ + ++ SK G+ + + GG +
Sbjct: 64 L-------LSNRKMPSPKMVRALILSPTRELASQIAESFKTYSK-GMGLQIATIYGGVKY 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L G+DVL+ TPGR + I++ + L + C +LDE D + D F ++ +
Sbjct: 116 GPQYKALLGGLDVLVCTPGRLIDHIEQKTVDLSQVECFVLDEADQML-DLGFVKPIRQVA 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
S P Q LF +AT+P EI E+ D K V
Sbjct: 175 SRLPKKRQNLFFSATMPKEIGVLASELLTDPKRV 208
>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 485
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 141/272 (51%), Gaps = 20/272 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL D ++++L + + P+ IQ A P ++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L +E SKST G R+ +IL PT ELA Q+ + + + + R+ V+ GG Q
Sbjct: 63 LSEER----SKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRH-LNIRNTVIFGGVSQH 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q+ L+ GVDVLIATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 118 SQVNTLKAGVDVLIATPGRLLDLMNQGFISLRDVQFFVLDEADRML-DMGFIHDVKKVIT 176
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P ++ KL + ++ P ++P V + D
Sbjct: 177 KLPTHRQSLFFSATMPPDVA-KLADT-----ILNNPAKVEVTP------VSSTADTIEQA 224
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ L+ +++ + +VF K
Sbjct: 225 MYFVGKEDKRKLLVHILDDKNIKSALVFARTK 256
>gi|145219726|ref|YP_001130435.1| DEAD/DEAH box helicase [Chlorobium phaeovibrioides DSM 265]
gi|145205890|gb|ABP36933.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeovibrioides
DSM 265]
Length = 412
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 114/199 (57%), Gaps = 10/199 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F L D ++++L+ + + P+ IQA A P V++G + Q+G+GKT A+ +P++QR
Sbjct: 3 FSSLHIIDPILQALQEEGYSHPTPIQAEAIPVVLKGGDILGCAQTGTGKTAAFAIPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L + +QG K R +I+ PT ELA Q+ S S G P + V+ GG Q
Sbjct: 63 LGESRVQGRIKKI----RSLIVTPTRELAIQI---GESFSAYGRHTPLTNTVIFGGVNQN 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L+ +G + L ++ +LDE D + D F ++ +++
Sbjct: 116 PQISRLKNGVDILVATPGRLLDLMNQGFINLHDVEILVLDEADRML-DMGFIHDIRKVLA 174
Query: 448 SSPVTAQYLFVTATLPVEI 466
+ P Q LF +AT+P +I
Sbjct: 175 ALPKEKQSLFFSATMPPDI 193
>gi|407688996|ref|YP_006804169.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292376|gb|AFT96688.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 483
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 146/274 (53%), Gaps = 25/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG+ R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLK 173
Query: 448 SSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT EI K + P + P + +++ LV
Sbjct: 174 LLPQERQSLLFSATFSDEITALAKTITRNP-VSISTAPANTTVE-AVQQHLVTI------ 225
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK+ +T +AL+ LI++ + +VF K
Sbjct: 226 DKSKKT------TALICLIKQQKWEQVLVFSRTK 253
>gi|406596808|ref|YP_006747938.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406598056|ref|YP_006749186.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406374129|gb|AFS37384.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
gi|406375377|gb|AFS38632.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii ATCC 27126]
Length = 483
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 146/274 (53%), Gaps = 25/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + + SG+ R +IL PT ELA+QV + R+ S+ +P ++ VV GG
Sbjct: 62 RLME------GQPVSGNNVRALILTPTRELAAQVEESIRAFSEF-LPLKTAVVFGGVGIN 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 115 PQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIRRVLK 173
Query: 448 SSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT EI K + P + P + +++ LV
Sbjct: 174 LLPQERQSLLFSATFSDEITALAKTITRNP-VSISTAPANTTVE-AVQQHLVTI------ 225
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK+ +T +AL+ LI++ + +VF K
Sbjct: 226 DKSKKT------TALICLIKQQKWEQVLVFSRTK 253
>gi|145299222|ref|YP_001142063.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357421|ref|ZP_12960119.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142851994|gb|ABO90315.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689382|gb|EHI53922.1| ATP-dependent RNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 463
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 139/271 (51%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P V+ G+ + Q+G+GKT + LP++
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAVLAGQDVLGGAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLMANHGRGGRRQV----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
LE ++ GVD+L+ATPGR + L+ + L L L +LDE D + D F ++ ++ +
Sbjct: 117 NLEAIKLGVDILVATPGRLLDLLTQRALTLTELEVLVLDEADRML-DMGFITDIRRIMKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT N++ E+ D ++ P + +SP + + +Q + +
Sbjct: 176 LPEERQTLLFSATF----SNEIKELADD--LLKSPTLIEVSPS------NSTAEQVNQRI 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K+ L +I ++ + +VF K
Sbjct: 224 IKVDRERKRELLSHMIGRNNWQRVLVFVRTK 254
>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 423
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++ +L RQ + P+ IQA A P V+ G + A Q+G+GKT + LP++
Sbjct: 2 TFSELGLCPEILNALTRQGYTEPTPIQAQAIPAVMAGNDVMAAAQTGTGKTAGFTLPIL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L+G ++ + + RV+IL PT ELA+QV + + K +P VV GG +
Sbjct: 61 ----EMLKGNERAKANTARVLILTPTRELAAQVGESVANYGK-DLPLSYAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L +LDE D + D F ++ +I
Sbjct: 116 QMMKLRKGVDILVATPGRLLDLYQQNAIRFPQLETLVLDEADRML-DMGFIHDIKKIIKL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAKRQNLMFSATFSDEI 192
>gi|256424779|ref|YP_003125432.1| DEAD/DEAH box helicase [Chitinophaga pinensis DSM 2588]
gi|256039687|gb|ACU63231.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
2588]
Length = 492
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 117/198 (59%), Gaps = 3/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++LG + ++++L + + P+ IQ A P V++ + + Q+G+GKT A+ +P++Q
Sbjct: 28 SFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPHVLDTRDLLGCAQTGTGKTAAFAIPLLQ 87
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ Q++ Q + + + +IL PT ELA Q+ + + K + +S+V+ GG Q
Sbjct: 88 LMHQDQ-QAQQRKGLRNIKALILTPTRELAIQIQESFTAYGKF-LDLKSLVIFGGVSQHP 145
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L++GVD+LIATPGR + LI + + L +++ +LDE D + D F +Q +I
Sbjct: 146 QTEALKKGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRML-DMGFVHDVQRVIVK 204
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 205 LPEQRQSLFFSATMPPEI 222
>gi|148553067|ref|YP_001260649.1| DEAD/DEAH box helicase [Sphingomonas wittichii RW1]
gi|148498257|gb|ABQ66511.1| DEAD/DEAH box helicase domain protein [Sphingomonas wittichii RW1]
Length = 448
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 134/273 (49%), Gaps = 22/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD ++ ++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 2 SFADLGLSDELLRAVSEAGYSEPTPIQAQAIPPVLMMKDLIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +S + PR +IL PT ELA+QV N K ++++ GG
Sbjct: 62 ILAH------GRSRARMPRSLILEPTRELAAQVAENFEKYGKYHKLTMALLI-GGVNMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR M L G + L ++DE D + D F ++ + +
Sbjct: 115 QVAALEKGVDVLIATPGRLMDLFGRGKILLTGCSLLVIDEADRML-DMGFIPDIEEICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDK 507
P Q L +AT+P I KL + F + P +S P +D S
Sbjct: 174 LPAQRQTLLFSATMPAPI-KKLADKF-----LSNPKQIEVSRPASTNLAIDQS------- 220
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
ET+ K+ L L+ VS I+F N+K+
Sbjct: 221 LVETSSRAKRETLRGLLNGGDVSTAIIFSNRKT 253
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 10/198 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + +++++ RQ + P+ IQ A P +++ + I Q+G+GKT A+ LP++Q
Sbjct: 2 TFKELNLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFALPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E +G+ + +IL PT ELA Q+ N +P R V+ GG Q
Sbjct: 62 NLASERRKGI--------KALILTPTRELAIQIQENFEHYG-THLPLRCTVIFGGVSQVP 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVD+LIATPGR LI +G + + + +LDE D + D F ++ ++++
Sbjct: 113 QVERLRRGVDILIATPGRLCDLINQGYVDISQIEVFVLDEADRML-DMGFIRDVKKVLNA 171
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT+P EI
Sbjct: 172 LPKKRQTLLFSATMPKEI 189
>gi|345566179|gb|EGX49125.1| hypothetical protein AOL_s00079g79 [Arthrobotrys oligospora ATCC
24927]
Length = 606
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 43/314 (13%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299
S +N+ E D PK F+R F+E+G ++E+L+ ++ P+ IQ
Sbjct: 130 SWYNVNREVWDPPK-----------FNR--FEEMGLHPVIMENLQLSHYTVPTPIQRACI 176
Query: 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS--------GSPRVVIL 351
P +V+G I Q+GSGKT A+L P+I +L +++ L+ S P V+I+
Sbjct: 177 PTIVKGFDLIACAQTGSGKTAAFLAPIISKL-MGKIKTLAAPRSNRGGYGRKAEPLVLIV 235
Query: 352 APTAELASQVLSNCRSLSKCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFL 410
APT ELA+Q+ CR C F R +V GG + Q L++G D+++ TPGR
Sbjct: 236 APTRELATQIFLECRKF--CYRSFMRPCLVYGGADIRPQRTELEKGCDLVVGTPGRLQDF 293
Query: 411 IKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA----QYLFVTATLPVEI 466
I G + L +R ++DE D + D FE L+ L+ S Q + +AT P +
Sbjct: 294 IDRGNISLGRVRYTVIDEADEML-DMGFEPQLRKLLHSGDHNEDENLQIMMFSATFPASV 352
Query: 467 YNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE 525
E D V + G + ++P + + ++ + D+ K+ A+ L+
Sbjct: 353 RKLAKEFLADDYVRINVGRIGSVNPNVVQRIIYANFDK------------KRQAIFDLLA 400
Query: 526 KSPVSKTIVFCNKK 539
SP ++T++F N K
Sbjct: 401 SSPAARTLIFVNSK 414
>gi|345493220|ref|XP_001605420.2| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 1
[Nasonia vitripennis]
Length = 777
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 139/279 (49%), Gaps = 22/279 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++E +++Q FL P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 110 FPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYIL 169
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P + + LS+ P V++LAPT ELA Q+ S R S C R+ + G
Sbjct: 170 PATVHINNQPR--LSRGD--GPIVLVLAPTRELAQQIQSVARDFGSSSC---IRNTCIFG 222
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE +
Sbjct: 223 GSPKGPQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQI 281
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCS 500
+ +I Q L +AT P E+ L E F + + G ++ + + + C
Sbjct: 282 RKIIEQIRPDRQVLMWSATWPKEV-QALAEDFLTDYIQINIGSLNLAANHNIRQIIEIC- 339
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
QE +K NK + LL+ I +KTI+F K
Sbjct: 340 --QEHEKE------NKLAVLLREIGCERGNKTIIFVETK 370
>gi|449116380|ref|ZP_21752831.1| hypothetical protein HMPREF9726_00816 [Treponema denticola H-22]
gi|448954267|gb|EMB35050.1| hypothetical protein HMPREF9726_00816 [Treponema denticola H-22]
Length = 570
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIIVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|229515773|ref|ZP_04405232.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|229347542|gb|EEO12502.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
Length = 397
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVDQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|449104683|ref|ZP_21741421.1| hypothetical protein HMPREF9730_02318 [Treponema denticola AL-2]
gi|448962819|gb|EMB43505.1| hypothetical protein HMPREF9730_02318 [Treponema denticola AL-2]
Length = 570
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|345493222|ref|XP_003427025.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like isoform 2
[Nasonia vitripennis]
Length = 710
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 22/279 (7%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++E +++Q FL P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 43 FPIQAFEESNFPDYVMEEIRKQGFLEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYIL 102
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P + + S P V++LAPT ELA Q+ S R S C R+ + G
Sbjct: 103 PATVHINNQP----RLSRGDGPIVLVLAPTRELAQQIQSVARDFGSSSC---IRNTCIFG 155
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE +
Sbjct: 156 GSPKGPQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQI 214
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCS 500
+ +I Q L +AT P E+ L E F + + G ++ + + + C
Sbjct: 215 RKIIEQIRPDRQVLMWSATWPKEV-QALAEDFLTDYIQINIGSLNLAANHNIRQIIEIC- 272
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
QE +K NK + LL+ I +KTI+F K
Sbjct: 273 --QEHEKE------NKLAVLLREIGCERGNKTIIFVETK 303
>gi|449105282|ref|ZP_21741987.1| hypothetical protein HMPREF9729_00252 [Treponema denticola ASLM]
gi|451969588|ref|ZP_21922817.1| hypothetical protein HMPREF9728_02019 [Treponema denticola US-Trep]
gi|448967269|gb|EMB47910.1| hypothetical protein HMPREF9729_00252 [Treponema denticola ASLM]
gi|451701685|gb|EMD56146.1| hypothetical protein HMPREF9728_02019 [Treponema denticola US-Trep]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIIVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|349699158|ref|ZP_08900787.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 445
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 140/271 (51%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA A P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALDEEGYATPTPIQAGAIPYLLEGRDLLGLAQTGTGKTAAFALPILD 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E+ + K R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 RLFREKGRAHPKGA----RALVLAPTRELASQIGESFASYARH-MRFSHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ ++++
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLSGLEVLVLDEADRML-DMGFVRDIRKIVAA 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + D P +++P + D+
Sbjct: 177 LPTDRQTLLFSATMPKTISDLAHGLLRD------PATVQVTPP------SSTVDRIRQAV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ AL L++ V + +VF K
Sbjct: 225 MFVDTGNKREALKLLVDSPKVERAVVFTLMK 255
>gi|424820640|ref|ZP_18245678.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. venerealis NCTC 10354]
gi|342327419|gb|EGU23903.1| putative ATP-dependent RNA helicase RhlE [Campylobacter fetus
subsp. venerealis NCTC 10354]
Length = 298
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 116/199 (58%), Gaps = 6/199 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + S ++E+LK N+ P+QIQ +A P +++GK + ++G+GKT A+ LP++++
Sbjct: 3 FSDFDLSSAILEALKELNYDAPTQIQQVAIPAIMQGKDILAGARTGTGKTAAFALPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E T RV++L PT ELA+QV N +S +K +PF+++ V GG Q
Sbjct: 63 LSSKERNKKRPQT----RVLVLVPTRELANQVTQNIKSYAK-KLPFKTLPVFGGVSSYPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G+D+++ATPGR + L + L L ++ + DE D +F D F ++ ++
Sbjct: 118 IQALKSGIDIVVATPGRLLDLALQNALSLEHIDTLVFDEADRMF-DMGFIHDIKQIVKML 176
Query: 450 PVTAQYLFVTATLPVEIYN 468
P Q L +AT P E+ +
Sbjct: 177 PEKRQNLLFSATYPSEVMS 195
>gi|298291343|ref|YP_003693282.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296927854|gb|ADH88663.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 499
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 19/272 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG SD ++ ++ + P+ IQA A P V+ + + Q+G+GKT A+ LP++
Sbjct: 3 FNELGLSDKVLSAVADAGYTEPTPIQAQAIPHVLARRDVLGLAQTGTGKTAAFTLPMLTM 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q ++ + PR +IL PT ELA+QV N K ++ GG Q
Sbjct: 63 LEQ------GRARARMPRTLILEPTRELAAQVEENFTKYGKNH-KLNVALLIGGVSFGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L GVDVLIATPGR + ++ G L L + ++DE D + D F ++ +
Sbjct: 116 DAKLLRGVDVLIATPGRLLDHVERGRLLLSGIEILVIDEADRML-DMGFIPDIERVCKLV 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+P EI + + + V + + +FLV C +
Sbjct: 175 PFTRQTLFFSATMPPEIQRLVAQFLSNPVQVEASRPSSTAANITQFLVACGKED------ 228
Query: 510 ETAFLNKKSALLQLIEKSP-VSKTIVFCNKKS 540
K+ L +LI + + I+FCN+KS
Sbjct: 229 ----FAKRETLRELINSADNLQNGIIFCNRKS 256
>gi|449137404|ref|ZP_21772730.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
gi|448883856|gb|EMB14363.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
europaea 6C]
Length = 410
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 133/276 (48%), Gaps = 31/276 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 3 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L++ GVP V++GG
Sbjct: 63 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAR-GVPTEIAVLSGGKNMNR 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 115 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 174 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 216
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
E + +K L L+++ + I+FC K
Sbjct: 217 IEQRYFTIAQDDKVKLLESLLKREKPEQAIIFCRTK 252
>gi|157108214|ref|XP_001650127.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|65306807|gb|AAY41941.1| vasa-like protein [Aedes aegypti]
gi|108879362|gb|EAT43587.1| AAEL004978-PA [Aedes aegypti]
Length = 638
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 140/276 (50%), Gaps = 22/276 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + G DY+++++++ ++ +P+ IQ A P +++ + + Q+GSGKT A+LLP+I
Sbjct: 215 KSFGDSGLRDYLLQNIRKSHYTKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPMI 274
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L L + G+P VVI+APT ELA Q+ + R + G + V GG +
Sbjct: 275 NTL----LNDNADMVPGNPFVVIIAPTRELALQIFNEARKFA-LGTVLKVCVAYGGTATR 329
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++N+Q G +L+ATPGR + + + + ++ +LDE D + D F +++ +++
Sbjct: 330 HQMDNIQNGCHILVATPGRLLDFVDKQAVTFERVKFVVLDEADRML-DMGFMPSVEKMMN 388
Query: 448 SSPV----TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ Q L +AT P EI +L F + + + G+ + S D
Sbjct: 389 HETMRPKEERQTLMFSATFPAEI-QELAGQFLNNYIFVAVGI----------VGGASTDV 437
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E + + K+ L +L+E + T+VF K
Sbjct: 438 EQ-TIHQVSKFQKRKKLEELLEADDPTGTLVFVETK 472
>gi|42527612|ref|NP_972710.1| DEAD/DEAH box helicase [Treponema denticola ATCC 35405]
gi|41818440|gb|AAS12629.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Treponema
denticola ATCC 35405]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|449129185|ref|ZP_21765416.1| hypothetical protein HMPREF9724_00081 [Treponema denticola SP37]
gi|448946027|gb|EMB26892.1| hypothetical protein HMPREF9724_00081 [Treponema denticola SP37]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
Length = 641
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 139/275 (50%), Gaps = 22/275 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E G DY++ ++++ +L+P+ IQ A P +++ + + Q+GSGKT A+LLP+I
Sbjct: 218 SFNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPIIN 277
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L T G+P VV++APT ELA Q+ R ++ G + +V GG +
Sbjct: 278 TL----LNDNDDMTPGNPFVVVVAPTRELALQISEEARKFAR-GTILKVVVAYGGTATRH 332
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++N+ G +L+ATPGR + + + ++ +LDE D + D F A++ +++
Sbjct: 333 QIDNVNNGCHILVATPGRLLDFVDRQAVTFDRVKFVVLDEADRML-DMGFMPAVEKMMNH 391
Query: 449 SPVTA----QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ + Q L +AT P +I +L F + + + G+ + S D E
Sbjct: 392 ETMKSKEERQTLMFSATFPGQI-QELAGQFLNNYIFVAVGI----------VGGASSDVE 440
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ T F K+ L +++E + T+VF K
Sbjct: 441 QNIYEVTKF-QKRKKLEEILESNDPKGTLVFVETK 474
>gi|88707113|ref|ZP_01104807.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
gi|88698625|gb|EAQ95750.1| ATP-dependent RNA helicase [Congregibacter litoralis KT71]
Length = 423
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 136/276 (49%), Gaps = 29/276 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S ++++ + + +P+ IQ A P V++G+ + A Q+G+GKT A++LP++Q
Sbjct: 2 TFDALGLSPNLVKAANDRGYSQPTPIQTKAVPLVLDGQDVLAAAQTGTGKTAAFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + R ++L PT ELASQV + + + + RS VV GG R +
Sbjct: 62 RL-----AFVGGARGRQVRTLVLTPTRELASQVHDSVLTYGRY-LDLRSAVVFGGVRAEP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+ATPGR + L ++G + L +LDE D + D F ++ +I
Sbjct: 116 QIEALEPGVDVLVATPGRLLDLAQQGYVDFSALEVLVLDEADRML-DMGFIHDMRRIIEM 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS-GDQESDK 507
P+ Q L +AT EI + +E VD + + ++
Sbjct: 175 LPINRQTLMFSATFSQEIRSLAARYL-----------------VEPVSVDVAPANSTTEL 217
Query: 508 TPETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
+ A+ +K L+ L + + +VFC K
Sbjct: 218 VEQKAYAVDPEHKSDLLMHLFREGEWGQALVFCRTK 253
>gi|396925112|gb|AFN89214.1| vasa [Solea senegalensis]
Length = 558
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 138/281 (49%), Gaps = 29/281 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + +++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 203 TFEEAALCESLNKNISKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPMLQ 262
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + G S P +I+APT EL +Q+ R + G R +VV GG
Sbjct: 263 RLMADGVAGSRFSELQEPEAIIVAPTRELINQIYLEARKFAY-GTCVRPVVVYGGVSTGH 321
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G +VL TPGR M +I G + L LR +LDE D + D FE ++ L+ S
Sbjct: 322 QIRDVLRGCNVLCGTPGRLMDMIGRGKVGLSKLRYLVLDEADRML-DMGFEPEMRRLVGS 380
Query: 449 ----SPVTAQYLFVTATLPVEI------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
+ Q L +AT P +I + K+ +F VV G
Sbjct: 381 PGMPTKENRQTLMFSATFPEDIQRLAADFLKVDYLFLAVGVVGGA--------------- 425
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
CS Q++ E NK+ LL +++ + + +TIVF KK
Sbjct: 426 CSDVQQT--FIEVGKFNKREQLLDILKTTGMDRTIVFVEKK 464
>gi|449124175|ref|ZP_21760494.1| hypothetical protein HMPREF9723_00538 [Treponema denticola OTK]
gi|448942506|gb|EMB23400.1| hypothetical protein HMPREF9723_00538 [Treponema denticola OTK]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|392537500|ref|ZP_10284637.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 433
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I +L N+ + IQ A P V +GK + + Q+G+GKT A+ LPVIQ
Sbjct: 2 NFKSFSFAPEIIRALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + +L ST+ +P ++LAPT ELA Q+ +NC+ +K + + + GG
Sbjct: 62 KLIESDL-----STTNAPTALVLAPTRELAEQIANNCKEYAK-HTSLKVVSLFGGVNTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+ GVD+++ATPGR + I+ G L L N++ +LDE D + D F +Q++I S
Sbjct: 116 QENALKAGVDIVVATPGRLLDHIRLGNLSLANVKHLVLDEADRML-DMGFITDMQTVIKS 174
Query: 449 SPVTAQYLFVTATLPVEI 466
Q L +AT P I
Sbjct: 175 CADDRQILLFSATFPAAI 192
>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 504
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 139/272 (51%), Gaps = 22/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + +++++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP+I
Sbjct: 2 TFDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + ++ + PR +IL PT ELA+QV N + K ++++ GG
Sbjct: 62 KLSR------GRARARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLI-GGVSFGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L GVDVLIATPGR + G + L ++ ++DE D + D F ++ +
Sbjct: 115 QEKKLDRGVDVLIATPGRLLDHCNRGKVLLTGVQILVIDEADRML-DMGFIPDIEEICKK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF-PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P T Q LF +AT+P EI +L + F + + + S +++ L+ + D
Sbjct: 174 LPFTRQTLFFSATMPPEI-QRLTDTFLHNPERIEVARASSTSANIKQVLLKTTRD----- 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L ++IE+ V I+FCN+K
Sbjct: 228 -------GKRDVLQRMIEEDNVKNAIIFCNRK 252
>gi|422341598|ref|ZP_16422539.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
denticola F0402]
gi|325474437|gb|EGC77624.1| DEAD/DEAH box family ATP-dependent RNA helicase [Treponema
denticola F0402]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|50121729|ref|YP_050896.1| ATP-dependent RNA helicase RhlE [Pectobacterium atrosepticum
SCRI1043]
gi|49612255|emb|CAG75705.1| putative ATP-dependent RNA helicase [Pectobacterium atrosepticum
SCRI1043]
Length = 483
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 119/216 (55%), Gaps = 8/216 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q +K P R +IL PT ELA+Q+ N ++ SK +P RS+VV GG
Sbjct: 62 LLTSREAQ--NKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LPLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRML-DMGFIHDIRRVLA 177
Query: 448 SSPVTAQYLFVTATLPVEI---YNKLVEVFPDCKVV 480
P Q L +AT EI NKL+ +VV
Sbjct: 178 KLPAKRQNLLFSATFSDEIKALANKLLTNPASVEVV 213
>gi|401626375|gb|EJS44323.1| dbp10p [Saccharomyces arboricola H-6]
Length = 1001
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 136/265 (51%), Gaps = 19/265 (7%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + T+ K +HK + SF G S ++ ++KR+ F +P+ IQ P +
Sbjct: 127 NEYFSTTNLEKTKHK---------KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 177
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP++++L+ S R VIL+P+ ELA Q
Sbjct: 178 LQSRDIVGMARTGSGKTAAFILPMVEKLK-------GHSGKIGARAVILSPSRELAMQTF 230
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + +K G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 231 NVFKDFAK-GTELRSVLLTGGDSLEEQFSMMMSNPDVIIATPGRFLHLKVEMNLDLKSVE 289
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
+ DE D LF + F+ L L++S P T Q L +ATLP + + + + +V
Sbjct: 290 YVVFDEADRLF-EMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRL 348
Query: 483 PGMHRISPGLEE-FLVDCSGDQESD 506
+IS LE F + D+E++
Sbjct: 349 DAETKISENLEMLFFSTKNADREAN 373
>gi|338737945|ref|YP_004674907.1| RNA helicase [Hyphomicrobium sp. MC1]
gi|337758508|emb|CCB64333.1| RNA helicase [Hyphomicrobium sp. MC1]
Length = 542
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 136/277 (49%), Gaps = 27/277 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F +LG S + ++ ++ P+ IQA A P V G+ + Q+G+GKT ++ LP+I
Sbjct: 4 KTFADLGLSPKVQAAIAAAGYVAPTPIQAAAIPVAVTGRDVLGIAQTGTGKTASFTLPMI 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFR 385
RL ++ + PR +ILAPT ELA+QV +S K GV + ++ GG
Sbjct: 64 TRLE------TGRARARMPRSLILAPTRELAAQV---AQSFEKYGVNHKLSLALLIGGVS 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q++ L GVDVLIATPGR + G + L+ + ++DE D + D F ++ +
Sbjct: 115 MDDQVKKLDRGVDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRML-DMGFIPDIEKI 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGD 502
P Q LF +AT+P EI +LV F P+ V P + + + V C
Sbjct: 174 CKLLPPRRQTLFFSATMPPEI-TRLVNQFLNNPERIEVAKPAT--TAKTITQRFVYCQNG 230
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++ K+ L +I V I+FCN+K
Sbjct: 231 ED---------WAKREVLRDMIRDGNVKNAIIFCNRK 258
>gi|10039335|dbj|BAB13310.1| Vasa-related protein PoVAS1 [Ephydatia fluviatilis]
Length = 546
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 141/275 (51%), Gaps = 18/275 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E+ + ++ + + RP+ +Q A P ++ G+ + Q+GSGKT A+LLP I
Sbjct: 94 TFEEVEFFESTKATIGKCGYKRPTPVQKYAIPIILAGRDLMACAQTGSGKTAAFLLPAIT 153
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +E++ G S++ + SP+V+I++PT EL Q+ + R + G +R +V GG
Sbjct: 154 KLIKEQVPGGSQAETQSPQVLIISPTRELTLQIYNEARKFTH-GTMYRPVVAYGGTAVGY 212
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS- 447
QL+ L+ G ++L+ TPGR + + G +QL + ILDE D + D FE ++ ++S
Sbjct: 213 QLKQLEGGCNILVGTPGRLLDFLNRGQVQLDQISVLILDEADRML-DMGFEPEIRKIVSN 271
Query: 448 -SSPVTA--QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
S P T Q L +AT P EI ++ F + + G V +
Sbjct: 272 YSMPETGKRQTLMFSATFPEEI-QRIANEFLSNYLFLTVGR-----------VGGATSDI 319
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + E K+ L +++ + V +T+VF K
Sbjct: 320 TQRIIEVDEFGKREKLSEILSATGVDRTLVFVETK 354
>gi|255533359|ref|YP_003093731.1| DEAD/DEAH box helicase [Pedobacter heparinus DSM 2366]
gi|255346343|gb|ACU05669.1| DEAD/DEAH box helicase domain protein [Pedobacter heparinus DSM
2366]
Length = 437
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 132/253 (52%), Gaps = 13/253 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FKEL + ++ +L+ + + +P+ IQ A P +++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FKELNLIEPILNALQTEGYTQPTPIQEQAIPSILQNRDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + ++L PT ELA Q+ + ++ K +P R +V+ GG QK Q
Sbjct: 63 LSKPHT---NTKIHKVIKALVLTPTRELAIQIEESFKAYGK-NLPIRHLVIFGGVGQKAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVD+L+ATPGR + L+ +G + L ++ +LDE D + D F ++ +I+
Sbjct: 119 TDALHRGVDILVATPGRLLDLMNQGFINLRDIEIFVLDEADRML-DMGFIHDVKKVIAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE---- 504
P Q LF +AT+P EI + + KV + P +E GD++
Sbjct: 178 PAKRQTLFFSATMPKEIQGLADTILTNPVKVEVTPVSSTAEKIRQEIFYVEKGDKKGLLM 237
Query: 505 ---SDKTPETAFL 514
DKT ETA +
Sbjct: 238 HILQDKTIETALV 250
>gi|15889610|ref|NP_355291.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
gi|15157502|gb|AAK88076.1| ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Length = 502
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 143/273 (52%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 15 SFNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 75 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISRM 188
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 189 VPPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 244
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS + ++P ++IVF K
Sbjct: 245 KTD----LLKKS-----LNENPDGRSIVFLRTK 268
>gi|340347760|ref|ZP_08670864.1| ATP-dependent RNA helicase [Prevotella dentalis DSM 3688]
gi|433652636|ref|YP_007296490.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
gi|339608706|gb|EGQ13594.1| ATP-dependent RNA helicase [Prevotella dentalis DSM 3688]
gi|433303169|gb|AGB28984.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
Length = 440
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 22/224 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL S ++ +L +N+ +P+ IQ A P ++G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFQELNISAPILRALTDKNYEQPTPIQQQAIPYALDGEDVLGLAQTGTGKTAAFAIPIIQ 61
Query: 329 RLRQEEL---QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L Q +L +G+ + +IL PT ELA Q+ C + RS V+ GG
Sbjct: 62 HLDQPDLLRQRGI--------KALILTPTRELAIQI-QECVTDYSHYTRVRSCVIFGGVG 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q++ LQ GVD+LIATPGR + LI +GI+ L +R +LDE D + D F ++ +
Sbjct: 113 QAPQVQQLQRGVDILIATPGRLLDLIGQGIISLSTIRHFVLDEADRML-DMGFIHDIRRI 171
Query: 446 ISSSPVTAQYLFVTATLPVEIYN---------KLVEVFPDCKVV 480
I P Q LF +AT+P I + VEV P VV
Sbjct: 172 IPLLPKRRQTLFFSATMPQSIATLSKSILHNPQRVEVAPVSSVV 215
>gi|419836253|ref|ZP_14359696.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|421342720|ref|ZP_15793125.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|423735152|ref|ZP_17708360.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|424009084|ref|ZP_17752030.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
gi|395943237|gb|EJH53912.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-43B1]
gi|408630321|gb|EKL02932.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408858118|gb|EKL97797.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-46B1]
gi|408864734|gb|EKM04152.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-44C1]
Length = 397
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M + + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDVYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 423
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 14/206 (6%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S++++ +L NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380
+IQRL L+ + P R ++L PT ELA QV N S +K G + +V
Sbjct: 64 IIQRL-------LATKDNVIPNPKLVRALVLVPTRELAQQVFDNVTSYAK-GTDLKVVVA 115
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG K Q +NL+ G D+L+ATPGR + + + L +LDE D + D F
Sbjct: 116 YGGVSMKVQTDNLRAGADILVATPGRLIDHMFTKNIMLSQTEVLVLDEADRML-DMGFMP 174
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEI 466
++ ++S Q LF +AT +I
Sbjct: 175 DIKRILSRMNEVRQTLFFSATFDNKI 200
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 136/275 (49%), Gaps = 19/275 (6%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K FKE G ++E++ +L + IQA++FPP++EG+ + A Q+G+GKT A+ LP+
Sbjct: 3 KKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPL 62
Query: 327 IQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ R+ + S S + P R+++L PT ELA Q+ N + + G+P R+ ++ GG
Sbjct: 63 LNRMIPK--ASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAYAD-GLPLRTSLIYGGVD 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q L G D++IATPGR + +++ + L + ILDE D + D F + L +
Sbjct: 120 FNAQKHELMRGADIVIATPGRLLDHVEQRTINLNQVEFLILDEADRML-DMGFMLDLLKI 178
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ P Q L +AT I + + D ++ + S +E +
Sbjct: 179 LAQLPSRRQSLLYSATFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAE-- 236
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +ALL L+ + I+F N+K
Sbjct: 237 -----------KNAALLYLLASRNFNNVIIFSNRK 260
>gi|449111386|ref|ZP_21747983.1| hypothetical protein HMPREF9735_01032 [Treponema denticola ATCC
33521]
gi|449113799|ref|ZP_21750282.1| hypothetical protein HMPREF9721_00800 [Treponema denticola ATCC
35404]
gi|448957882|gb|EMB38621.1| hypothetical protein HMPREF9721_00800 [Treponema denticola ATCC
35404]
gi|448958413|gb|EMB39144.1| hypothetical protein HMPREF9735_01032 [Treponema denticola ATCC
33521]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPGARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|449108862|ref|ZP_21745503.1| hypothetical protein HMPREF9722_01199 [Treponema denticola ATCC
33520]
gi|449119551|ref|ZP_21755947.1| hypothetical protein HMPREF9725_01412 [Treponema denticola H1-T]
gi|449121942|ref|ZP_21758288.1| hypothetical protein HMPREF9727_01048 [Treponema denticola MYR-T]
gi|448949383|gb|EMB30208.1| hypothetical protein HMPREF9727_01048 [Treponema denticola MYR-T]
gi|448950541|gb|EMB31363.1| hypothetical protein HMPREF9725_01412 [Treponema denticola H1-T]
gi|448961137|gb|EMB41845.1| hypothetical protein HMPREF9722_01199 [Treponema denticola ATCC
33520]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGKVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|449127864|ref|ZP_21764134.1| hypothetical protein HMPREF9733_01537 [Treponema denticola SP33]
gi|448943196|gb|EMB24088.1| hypothetical protein HMPREF9733_01537 [Treponema denticola SP33]
Length = 570
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 143/272 (52%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
+FKELG D ++++++ + F P+ IQ +A P ++ G++ ++A ++G+GKT A+ LP++
Sbjct: 4 TFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGLPLV 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR S +G R +IL PT ELA QV S P R V GG
Sbjct: 64 QELR---------SNTGRVRALILVPTRELAVQVAGELESFRIEEYP-RIATVYGGAAIG 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL +L+ GV++++ TPGR M ++ G L++ ++ ILDE D + N F ++++ S
Sbjct: 114 PQLRSLKTGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLN-MGFIEDIENIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P +I + + D ++V + E+F +E DK
Sbjct: 173 KANPEARVLMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVV---REGDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T AL++LI+ SP +VFC K
Sbjct: 230 T---------EALVRLIDTSPNFYGLVFCQTK 252
>gi|335034320|ref|ZP_08527671.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
gi|333794285|gb|EGL65631.1| ATP-dependent RNA helicase [Agrobacterium sp. ATCC 31749]
Length = 502
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 143/273 (52%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 15 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + +++T R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 75 MLMKQADRPANRTT----RTLILAPTRELVNQIGDNLRSFVKK-TPLRINQVVGGASINK 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 130 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISRM 188
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I D KV V PG + + +E+++ +G ++D
Sbjct: 189 VPPKRQTLLFSATMPKAISELASNFLTDPIKVEVTPPG--KAADKVEQYVHFVAG--KND 244
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS + ++P ++IVF K
Sbjct: 245 KTD----LLKKS-----LNENPDGRSIVFLRTK 268
>gi|429768994|ref|ZP_19301122.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429188345|gb|EKY29233.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 496
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 130/271 (47%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQ A P + G+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FSKLGLSPTTLQAVADTGYTTATPIQEQAIPVALAGRDVLGIAQTGTGKTAAFTLPMVDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR V+LAPT ELA QV + ++ G +++ GG Q
Sbjct: 64 LAS------GRARARMPRAVVLAPTRELADQVAESFAKYAR-GTRLNWVLLIGGVSMGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVLIATPGR + L G + L + ++DE D + D F ++ + +
Sbjct: 117 VAALNKGVDVLIATPGRLLDLFDRGKMLLTGVELMVVDEADRML-DMGFIPDIERIFKLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D RI D Q + P
Sbjct: 176 PPRRQTLFFSATMPPEITRLTQQFLKDPT--------RIEVARPATTADTI-TQHITRLP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K++AL L+E+ V IVFCN+KS
Sbjct: 227 TSDPKAKRTALRALVERGEVQNGIVFCNRKS 257
>gi|261822185|ref|YP_003260291.1| ATP-dependent RNA helicase RhlE [Pectobacterium wasabiae WPP163]
gi|261606198|gb|ACX88684.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385872484|gb|AFI91004.1| Putative ATP-dependent RNA helicase RhlE [Pectobacterium sp.
SCC3193]
Length = 476
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 118/216 (54%), Gaps = 8/216 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q K P R +IL PT ELA+Q+ N ++ SK +P RS+VV GG
Sbjct: 62 LLTSREAQ--HKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LPLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRML-DMGFIHDIRRVLA 177
Query: 448 SSPVTAQYLFVTATLPVEI---YNKLVEVFPDCKVV 480
P Q L +AT EI NKL+ +VV
Sbjct: 178 KLPAKRQNLLFSATFSDEIKALANKLLTNPASVEVV 213
>gi|171319485|ref|ZP_02908588.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171095294|gb|EDT40280.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 481
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 111/198 (56%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +Q A P V+ GK + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG S +S RV++L PT ELA QVL + + K G+ R + GG
Sbjct: 62 RLVQ---QG-SAVSSNRARVLVLVPTRELAEQVLQSFVAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q + +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRML-DLGFARELNAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
PV Q L +AT +I
Sbjct: 176 LPVQRQTLLFSATFTDDI 193
>gi|419954669|ref|ZP_14470805.1| ATP-dependent RNA helicase [Pseudomonas stutzeri TS44]
gi|387968533|gb|EIK52822.1| ATP-dependent RNA helicase [Pseudomonas stutzeri TS44]
Length = 439
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFSQLQALVLDEADRML-DLGFADELDQLFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSEAIRQMARELLRD 203
>gi|115375824|ref|ZP_01463075.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|310820250|ref|YP_003952608.1| ATP-dependent RNA helicase rhle [Stigmatella aurantiaca DW4/3-1]
gi|115367134|gb|EAU66118.1| ATP-dependent RNA helicase DeaD [Stigmatella aurantiaca DW4/3-1]
gi|309393322|gb|ADO70781.1| ATP-dependent RNA helicase RhlE [Stigmatella aurantiaca DW4/3-1]
Length = 496
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 116/201 (57%), Gaps = 10/201 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S+ ++ ++K + + P+ IQ A PP + G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFDELKLSEPLLRAVKAEGYTTPTPIQQRAIPPALTGQDVLGCAQTGTGKTAAFALPILH 61
Query: 329 RLRQEELQGLS-KSTSGSP-RVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFR 385
RL G S G P RV++L PT ELASQ+ + ++ + G+ + V+ GG
Sbjct: 62 RLS----AGRSPPPAQGRPIRVLVLTPTRELASQIADSFQAYGRFTGLSW--AVIFGGVG 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q + L+ GVDVLIATPGR + L+ +G++ L +LDE D + D F ++ +
Sbjct: 116 QHAQEQTLRRGVDVLIATPGRLLDLMGQGLVSYKALEVFVLDEADRML-DMGFIHDVKRI 174
Query: 446 ISSSPVTAQYLFVTATLPVEI 466
IS+ P Q LF +AT+P EI
Sbjct: 175 ISALPPKRQTLFFSATMPPEI 195
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 112/198 (56%), Gaps = 4/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++ ++ + + P+ IQ A P ++ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFSDLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q Q ++S PR ++L PT ELA+QV + + + +P R++ + GG
Sbjct: 62 RLSQSGQQASARSP--QPRALVLTPTRELAAQVGESVSAYGQY-LPLRALQIFGGVGMGP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + + +G L L ++ +LDE D + D F A++ ++
Sbjct: 119 QITALRRGVDILVATPGRLLDHVGQGNLDLGHVELLVLDEADRML-DMGFMPAIRRVLKL 177
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 178 LPARRQNLLFSATYSRDI 195
>gi|417305545|ref|ZP_12092505.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
gi|327538177|gb|EGF24861.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica WH47]
Length = 449
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 132/276 (47%), Gaps = 31/276 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 42 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 101
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L+ GVP V++GG
Sbjct: 102 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAS-GVPTEIAVLSGGKNMNR 153
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 154 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 212
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 213 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 255
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
E + +K L L+++ + I+FC K
Sbjct: 256 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCRTK 291
>gi|418054509|ref|ZP_12692565.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
gi|353212134|gb|EHB77534.1| DEAD/DEAH box helicase domain protein [Hyphomicrobium denitrificans
1NES1]
Length = 532
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 27/277 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F +LG S + ++ ++ P+ IQA A P + G+ + Q+G+GKT +++LP+I
Sbjct: 4 KTFADLGLSPKVQAAVTAAGYVNPTPIQAAAIPVALTGRDVLGIAQTGTGKTASFVLPMI 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFR 385
RL ++ + PR +ILAPT ELA+QV +S K G + ++ GG
Sbjct: 64 TRLEA------GRARARMPRSLILAPTRELAAQV---AQSFEKYGTNHKLSLALLIGGVS 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q++ L GVDVLIATPGR + G + L+ + ++DE D + D F ++ +
Sbjct: 115 MDDQVKKLDRGVDVLIATPGRLLDHFGRGRVMLMGVEILVIDEADRML-DMGFIPDIEKI 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGD 502
P Q LF +AT+P EI +LV+ F P V P + + + V C
Sbjct: 174 CKLLPPRRQTLFFSATMPPEI-TRLVDQFLKDPMRIEVAKPAT--TAKTITQRFVYCQNG 230
Query: 503 QESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++ K+ L +LI V I+FCN+K
Sbjct: 231 ED---------WAKREMLRELIRDGNVKNAIIFCNRK 258
>gi|197284517|ref|YP_002150389.1| ATP-dependent RNA helicase [Proteus mirabilis HI4320]
gi|194682004|emb|CAR41470.1| putative ATP-dependent RNA helicase [Proteus mirabilis HI4320]
Length = 465
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 9/199 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPIL-- 61
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
E+L ++ T G + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 62 ---EKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRY-LPIRSLVVFGGVSIN 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVDVLIATPGR + L + + L + +LDE D + D F ++ +I+
Sbjct: 118 PQMMKLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRML-DMGFIHDIRRVIN 176
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 KLPKKRQNLLFSATFSKEI 195
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + K R +IL PT ELA+QV + S +P S VV GG + Q
Sbjct: 63 LSKGQ-----KLKFNQVRALILTPTRELAAQVHESVEKYS-VNLPLTSDVVFGGVKANPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILNKL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKNRQNLLFSATFSDEI 192
>gi|344923278|ref|ZP_08776739.1| superfamily II DNA/RNA helicase [Candidatus Odyssella
thessalonicensis L13]
Length = 413
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 140/281 (49%), Gaps = 39/281 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E+G + + E++ + + P+ IQ A P ++GK + Q+G+GKT A+LLP I+
Sbjct: 2 SFSEIGLTSELAETVAKLGYDCPTPIQNTAIPLALQGKDILACAQTGTGKTAAFLLPTIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ S+S P VILAPT ELA+QV N S + G +++ V GG
Sbjct: 62 IIKH------SRSRHRLPSAVILAPTRELATQVYDNFLSYT-AGTNLKAISVVGGEIISI 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+LIATPGR + L + G L L N++ ++DE D + D F + + S
Sbjct: 115 QERILKKGVDILIATPGRLIDLFERGKLILTNVKVVVIDEADRML-DMGFMPEVDKIFSF 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD-QESDK 507
P Q L +AT+ P + RIS + ++ C S K
Sbjct: 174 LPRLRQTLMFSATI-------------------SPEIKRISQSYQ--ILPCEIKISRSAK 212
Query: 508 TPET----AF----LNKKSALLQLIEKSP-VSKTIVFCNKK 539
T ET F + K+ AL +++ P V T++FCNKK
Sbjct: 213 TAETIEQSVFYVEEMQKRVALRKVLRSHPSVEPTVIFCNKK 253
>gi|399023038|ref|ZP_10725105.1| DNA/RNA helicase, superfamily II [Chryseobacterium sp. CF314]
gi|398083597|gb|EJL74302.1| DNA/RNA helicase, superfamily II [Chryseobacterium sp. CF314]
Length = 420
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 114/197 (57%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++++L+++ + +P+ IQ A P ++E K + Q+G+GKT A+ +P++Q
Sbjct: 3 FTDLKIIKPILDALQKEGYEKPTPIQQKAIPSILERKDVLGTAQTGTGKTAAFAIPILQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L + + +IL PT ELA Q+ + + + +P + +V+ GG +Q +Q
Sbjct: 63 LTERPL-----PKNNYIKALILTPTRELAIQIEESFNAYGR-NLPLKKLVIFGGVKQGSQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L++GVD+L+ATPGR + I +GI+ L NL +LDE D + D F ++ +I
Sbjct: 117 EAALRKGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRML-DMGFVHDVKRIIKLL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 176 PPRRQTLFFSATMPTEI 192
>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 493
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 142/273 (52%), Gaps = 23/273 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G ++E L+ + F P+ IQA +P + G+ + Q+GSGKTL+++LP +
Sbjct: 89 FEEAGFPSRIVEELEGKGFSGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSFILPGL-- 146
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKT 388
+ ++ Q L + P ++LAPT EL Q+ CG+ RS V GG +
Sbjct: 147 VHAKDQQPLRRGD--GPIALVLAPTRELVMQIKKVADEF--CGMFGLRSTAVYGGASSQP 202
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L EGV+++IATPGR + L ++G L + +LDE D + D FE L+ +I
Sbjct: 203 QIKALHEGVEIVIATPGRLIDLHEQGHAPLSRVTFLVLDEADRML-DMGFEPQLRKIIPK 261
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ Q L +AT P E+ L E + + +VV+G + + +++ + CSG ++ D
Sbjct: 262 TNGNRQTLMWSATWPREV-RGLAESYMNDYIQVVVGNEELKTNSKIKQVIEVCSGREKED 320
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K LL +++K K IVFCN K
Sbjct: 321 K------------LLGVLDKFKGDKVIVFCNMK 341
>gi|427785439|gb|JAA58171.1| Putative atp-dependent rna helicase ddx54 [Rhipicephalus
pulchellus]
Length = 816
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 110/194 (56%), Gaps = 9/194 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S +++ + ++ + +P+ IQ A P V+EG+ + ++GSGKT A+L+P+++R
Sbjct: 58 FQAMGLSHAILKGILKRGYKQPTPIQRKAIPVVLEGRDVVAMARTGSGKTAAFLVPILER 117
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +S PR +IL+PT ELA Q + L K RS V+ GG + Q
Sbjct: 118 LG-------GRSPHTGPRALILSPTRELALQTHKFAKELGKF-TDLRSTVILGGDSMEDQ 169
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E + E D+LIATPGRF+ ++ E L+L +++ + DE D LF + F+ L ++
Sbjct: 170 FEAIHENPDLLIATPGRFLHVVMEMNLRLNSVKYVVFDEADRLF-EMGFQEQLTEVLHRL 228
Query: 450 PVTAQYLFVTATLP 463
P Q L +ATLP
Sbjct: 229 PEGRQTLLFSATLP 242
>gi|425073153|ref|ZP_18476259.1| hypothetical protein HMPREF1310_02594 [Proteus mirabilis WGLW4]
gi|404595790|gb|EKA96324.1| hypothetical protein HMPREF1310_02594 [Proteus mirabilis WGLW4]
Length = 465
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 9/199 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPIL-- 61
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
E+L ++ T G + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 62 ---EKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRY-LPIRSLVVFGGVSIN 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVDVLIATPGR + L + + L + +LDE D + D F ++ +I+
Sbjct: 118 PQMMKLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRML-DMGFIHDIRRVIN 176
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 KLPKKRQNLLFSATFSKEI 195
>gi|410862930|ref|YP_006978164.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
gi|410820192|gb|AFV86809.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii AltDE1]
Length = 480
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 144/271 (53%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V+EGK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G K ++ + R +IL PT ELA+QV + + S+ +P ++ VV GG
Sbjct: 62 RL----MSG-PKVSANNVRALILTPTRELAAQVEESICAFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 116 QMIKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + + + +E+ LV DK+
Sbjct: 175 LPEDRQSLLFSATFSDEITTLAKTITRNPVSISTAPANTTVDAVEQHLVTI------DKS 228
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+T +AL+ LI++ + +VF K
Sbjct: 229 KKT------TALICLIKQQKWEQVLVFSRTK 253
>gi|343515196|ref|ZP_08752255.1| DNA and RNA helicase [Vibrio sp. N418]
gi|342798728|gb|EGU34326.1| DNA and RNA helicase [Vibrio sp. N418]
Length = 399
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 141/275 (51%), Gaps = 29/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++L + + +P+ IQ A P +++G+ + A Q+G+GKT ++LP++++
Sbjct: 3 FSKLGLSQPITDALTKLGYNKPTSIQIKAIPEILKGQDLLAAAQTGTGKTAGFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E Q + R +IL PT ELA QV R + +P S+ + GG +K Q
Sbjct: 63 LSKGETQRKKRI-----RALILTPTRELACQVEEKVRDYGQ-NLPLTSLAMYGGVDEKLQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR + L + + + +LDE D + D F + ++
Sbjct: 117 KQALIEGVDVLVATPGRLLDLYGQHAVHFDEVEVLVLDEADRML-DMGFIEDINKILDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q+L +ATL NK+ E+ V P F + + +Q S K+
Sbjct: 176 PTDIQHLLFSATLS----NKVRELAKTA--VYNP-----------FEISIAANQASKKSI 218
Query: 510 ETAFL----NKKSALL-QLIEKSPVSKTIVFCNKK 539
E + +KKSALL LI+++ +T++F K
Sbjct: 219 EQWLIAVDKDKKSALLSHLIKENDWDQTLIFIETK 253
>gi|421081610|ref|ZP_15542520.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
gi|401703699|gb|EJS93912.1| ATP-dependent RNA helicase RhlE-like protein [Pectobacterium
wasabiae CFBP 3304]
Length = 480
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 118/216 (54%), Gaps = 8/216 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ +++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIEEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q K P R +IL PT ELA+Q+ N ++ SK +P RS+VV GG
Sbjct: 62 LLTSREAQ--HKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LPLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDLEHQRAVDLSQIEILVLDEADRML-DMGFIHDIRRVLA 177
Query: 448 SSPVTAQYLFVTATLPVEI---YNKLVEVFPDCKVV 480
P Q L +AT EI NKL+ +VV
Sbjct: 178 KLPAKRQNLLFSATFSDEIKALANKLLANPASVEVV 213
>gi|332186551|ref|ZP_08388295.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
gi|332013534|gb|EGI55595.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
Length = 469
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 144/277 (51%), Gaps = 28/277 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + P+ IQA A P V+ + I Q+G+GKT +++LP+I
Sbjct: 2 SFADLGLSDELLKTVTDAGYTEPTPIQASAIPSVLMMRDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR-SM-VVTGGFRQ 386
L +S + PR +IL PT ELA+QV N K G + SM ++ GG
Sbjct: 62 ILAH------GRSRARMPRSLILEPTRELAAQVAEN---FEKYGANHKLSMALLIGGVSM 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ +
Sbjct: 113 GDQIKALEKGVDVLIATPGRLMDLFQRGNILLTGCSMLVIDEADRML-DMGFIPDIEEIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+ P Q L +AT+P I KL + F P V P I+ + +F+V +
Sbjct: 172 TKLPKQRQTLLFSATMPPPI-KKLADKFLENPKMIEVARPASTNIN--ITQFVVPVA--- 225
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
P++ K+ L QL+++ V I+FCN+K+
Sbjct: 226 -----PQS--FEKRKRLRQLLKQDEVRTAIIFCNRKT 255
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 111/198 (56%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG +D ++ +L + P+ IQA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 14 SFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPILQ 73
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +Q G PR +IL PT EL +QV + ++ +K RS+++ GG
Sbjct: 74 RLLDNPMQ---TRKPGRPRCLILTPTRELTAQVEESVKAYAKY-TRIRSVLIFGGVSINP 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++ VD+L+ATPGR + +++G + L + +LDE D + D F ++ +I+
Sbjct: 130 QIQALRQPVDILVATPGRLLDHVQQGTVDLSGVEIFVLDEADRML-DMGFIHDIRRVIAK 188
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 189 LPAKRQNLLFSATFSPEI 206
>gi|325106943|ref|YP_004268011.1| DEAD/DEAH box helicase [Planctomyces brasiliensis DSM 5305]
gi|324967211|gb|ADY57989.1| DEAD/DEAH box helicase domain protein [Planctomyces brasiliensis
DSM 5305]
Length = 399
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 141/275 (51%), Gaps = 25/275 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++ +F +LG S +E LK + PS IQ PP ++G C+ Q+G+GKT A+++P
Sbjct: 15 TKVTFADLGLSPETVEHLKSVGYEHPSPIQRDFIPPALKGVDCLGQSQTGTGKTAAFMMP 74
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V++ L++++ + P+ ++L PT EL+ QV + +S+ VV GG
Sbjct: 75 VLELLKEQQEE---------PQALVLCPTRELSEQVAVEAQKISRFS-KLEIAVVVGGRP 124
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
K Q++ ++ GVDV++ TPGR + L K L L N+R A+LDE D + D F ++ +
Sbjct: 125 LKAQMQKIERGVDVVVGTPGRVIDLFKRKSLSLKNIRLAVLDEADRML-DIGFRPDMEFI 183
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ P Q L ++ATLP E+ D ++ + P + + +E+F C+ D+
Sbjct: 184 LKQCPKERQTLLLSATLPSEVERLANRFMKDPVRIDIEP-QNVTADRVEQFY--CTVDEH 240
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K L++L+ + + IVFC K
Sbjct: 241 ----------RKLQLLIKLLVQEKPKQAIVFCRTK 265
>gi|225011497|ref|ZP_03701935.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
MS024-2A]
gi|225004000|gb|EEG41972.1| DEAD/DEAH box helicase domain protein [Flavobacteria bacterium
MS024-2A]
Length = 415
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 144/278 (51%), Gaps = 31/278 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L ++++L++Q + +P+ IQ A P +++G + Q+G+GKT A+ +P++
Sbjct: 2 TFKDLKLELPILKALEKQGYTQPTPIQEQAIPILLKGHDLLGVAQTGTGKTAAFGIPILN 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +E G K + +++ PT ELA Q+ N S+ R+ V+ GG +Q
Sbjct: 62 HLLKENNSGQGKR---KIKALVVTPTRELAIQIAENFTDYSQF-THLRNTVIFGGVKQSK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +LQ+GVD+L+ATPGR + L+ +G + +L+ +LDE D + D F ++ +I+
Sbjct: 118 QVASLQQGVDILVATPGRLLDLMNQGYITFRDLKYVVLDEADQML-DMGFIHDVKKIIAK 176
Query: 449 SPVTAQYLFVTATLP---VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q LF +AT+P VE+ K++ F +V + P +
Sbjct: 177 LPPNRQSLFFSATMPKTIVELSQKMLGDFE--RVTIKP-----------------EQATA 217
Query: 506 DKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
+K + + NK + L+ L+++ P +VF K
Sbjct: 218 EKVKQGVYFVSKNNKPNLLIHLLDQRPQDSVLVFSRTK 255
>gi|227356697|ref|ZP_03841083.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|425067413|ref|ZP_18470529.1| hypothetical protein HMPREF1311_00567 [Proteus mirabilis WGLW6]
gi|227163205|gb|EEI48136.1| ATP-dependent RNA helicase [Proteus mirabilis ATCC 29906]
gi|404601244|gb|EKB01657.1| hypothetical protein HMPREF1311_00567 [Proteus mirabilis WGLW6]
Length = 465
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 9/199 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ ++ Q + P+ IQ A P++ GK + + Q+G+GKT A+ LP++
Sbjct: 4 FTSLGLSEALLRAIDEQGYKTPTPIQQQAIEPILAGKDVLASAQTGTGKTAAFTLPIL-- 61
Query: 330 LRQEELQGLSKSTSGSP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
E+L ++ T G + +IL PT ELA+Q+ N ++ S+ +P RS+VV GG
Sbjct: 62 ---EKLATSAEKTKGRKPVKALILTPTRELAAQIADNVKAYSRY-LPIRSLVVFGGVSIN 117
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVDVLIATPGR + L + + L + +LDE D + D F ++ +I+
Sbjct: 118 PQMMKLRGGVDVLIATPGRLLDLEHQNAVDLSRVEVLVLDEADRML-DMGFIHDIRRVIN 176
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 KLPKKRQNLLFSATFSKEI 195
>gi|365538577|ref|ZP_09363752.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 412
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 21/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG SD +++++ + P+ IQ A P ++ GK+ I A Q+G+GKT +++LP++Q
Sbjct: 3 FSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKTASFVLPILQM 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q Q + R +ILAPT ELA QV N +K +P S+ + GG + Q
Sbjct: 63 LSQGTTQRAKRV-----RALILAPTRELALQVEENITQYAKY-LPLTSLAMYGGVDSQKQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVD+LIATPGR + + + + L ++DE D + D F + ++
Sbjct: 117 KQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRML-DMGFIEDINKIVDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P+ Q L +ATL + D + G +R +E++++ DQ
Sbjct: 176 PLNRQNLLFSATLSRPVRELAKSAINDPIEIDVAGYNRTPNQIEQWIITVDKDQ------ 229
Query: 510 ETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
KSALL LI ++ + ++F K
Sbjct: 230 -------KSALLSHLITENQWQQAMIFIETK 253
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILDAVAEQGYETPSPIQAKAIPAVLEGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +++ R +IL PT ELA+Q+ +N + K +P RS VV GG +
Sbjct: 62 RLAAG-----TRAPGKQVRALILTPTRELAAQIGANIEAYGKH-LPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L +LDE D + D F ++ ++ +
Sbjct: 116 QIAKLRGGVDILVATPGRLLDLHGQKAVNFDALDVLVLDEADRML-DMGFIHDIRRILKT 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPSKRQNLLFSATFSQEI 192
>gi|398388657|ref|XP_003847790.1| hypothetical protein MYCGRDRAFT_97328 [Zymoseptoria tritici IPO323]
gi|339467663|gb|EGP82766.1| hypothetical protein MYCGRDRAFT_97328 [Zymoseptoria tritici IPO323]
Length = 544
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 146/295 (49%), Gaps = 43/295 (14%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++E++K + RP+ IQ A P + G I Q+GSGKTLAYL+PV+
Sbjct: 104 SFEDAGMHPVILENIKLAGYERPTPIQCYAIPAALMGHDVIAISQTGSGKTLAYLIPVLS 163
Query: 329 RL--RQEELQG----LS------KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
L + ++L+G LS + P V+I+ PT ELA Q+ +CR L +R
Sbjct: 164 PLMGKGKKLRGPRPDLSLGYNPRNAVRAEPLVIIVVPTRELAIQIFDDCRRLC-----YR 218
Query: 377 SM----VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI-KEGILQLINLRCAILDEVDI 431
SM V GG+ K+Q+E+L +G D+LIATPGR + L+ K +L + ++ I+DE D
Sbjct: 219 SMLRPCVAYGGYPMKSQIEDLGKGCDILIATPGRLVALMGKPEVLTMSRVKYTIIDEADE 278
Query: 432 LFN---DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI 488
+ + DE+ ++ + S+ Y+ +AT +NK K M RI
Sbjct: 279 MLDNDWDEEMKIIMTGGDSNEDADHIYMMFSAT-----FNKAARSI--AKEYMAEDSVRI 331
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLN---KKSALLQ-LIEKSPVSKTIVFCNKK 539
G G + + F++ K+ A L L+ +T++FCN K
Sbjct: 332 RVGR-------PGQSHKNISQHVVFVDGGKKRDACLDFLMNIEEKGRTLIFCNSK 379
>gi|91179150|gb|ABE27759.1| vasa [Azumapecten farreri]
Length = 801
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 141/280 (50%), Gaps = 22/280 (7%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF+E G D + +L + +F +P+ +Q + P V+ G+ + Q+GSGKT A+LLP
Sbjct: 350 SIKSFEEAGIYDGFMTNLVKAHFEKPTPVQKYSIPIVMSGRDLMACAQTGSGKTAAFLLP 409
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V+ + + L G + S P+ +++APT ELA Q+ ++ R S G R +V+ GG
Sbjct: 410 VLTGMMKNGLTGSAFSDVQEPQALVVAPTRELALQIFNDARKFSH-GTMLRPVVLYGGTS 468
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVAL 442
QL+ ++ G +++ TPGR + +I +G + L L+ ILDE D + + D + +
Sbjct: 469 VGYQLKQVENGAHIVVGTPGRLIDVINKGKISLAKLKYLILDEADRMLDMGFGPDIKKIV 528
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502
L + Q L +AT P EI KL F + + + G R+ G
Sbjct: 529 HELGTPEKTERQTLMFSATFPEEI-QKLAGDFLNDYLFLTVG--RV------------GG 573
Query: 503 QESDKTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKK 539
SD T ++ K+ L ++ +S KT+VF +K
Sbjct: 574 ACSDVTQHFFQVDRQQKRQKLCDILSESGADKTLVFVEQK 613
>gi|254228105|ref|ZP_04921535.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262395917|ref|YP_003287770.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
gi|151939601|gb|EDN58429.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262339511|gb|ACY53305.1| ATP-dependent RNA helicase RhlE [Vibrio sp. Ex25]
Length = 522
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S+ + R +IL PT ELA+QV N + +P S VV GG + Q
Sbjct: 63 LSNG-----SRVRANQVRALILTPTRELAAQVQENVFMYGRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRML-DMGFIRDIRKILALL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKQRQNLLFSATFSDEI 192
>gi|359433282|ref|ZP_09223619.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20652]
gi|357920080|dbj|GAA59868.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20652]
Length = 434
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + +I++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + +L ST+ +P ++LAPT ELA Q+ +N R +K + + + GG
Sbjct: 62 KLVESKL-----STTNAPHALVLAPTRELAEQIANNFRDFAKH-TSLKVVSLFGGVSTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+EGVD+++ATPGR I+ G L L +++ +LDE D + D F +Q++I S
Sbjct: 116 QANALKEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRML-DMGFIEDMQNVIKS 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT P I +V ++V + + +E + +
Sbjct: 175 CAEERQILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERR----- 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +LI K + +VF N K
Sbjct: 230 -------KQELLSELIGKKNWQQVLVFVNMK 253
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 135/272 (49%), Gaps = 19/272 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++ R
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHR 79
Query: 330 LRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 80 LM--PLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIGP 136
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L+ G +VL+ATPGR + +++ + L + +LDE D + D F L+ +I
Sbjct: 137 QKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML-DMGFLPDLERIIRL 195
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG-LEEFLVDCSGDQESDK 507
P Q L +AT EI KL + + V + + + + SGDQ
Sbjct: 196 LPAQRQGLLFSATFSNEI-RKLGRSYLNHPVEIEVAARNATANTITQIAYKMSGDQ---- 250
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K++A++ L++ + + IVF N K
Sbjct: 251 --------KRAAVVHLVKSRGLKQVIVFSNTK 274
>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 578
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRML-DMGFIRDIKKILAM 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAKRQNLMFSATFSDEI 192
>gi|357634253|ref|ZP_09132131.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
gi|357582807|gb|EHJ48140.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
Length = 492
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 129/271 (47%), Gaps = 21/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF + E++KR + P+ IQA A P V EG+ + Q+G+GKT A+LLP+I
Sbjct: 2 SFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +KS R +ILAPT ELA Q+ L + G R+ V+ GG
Sbjct: 62 RLM------TTKSEKRGVRALILAPTRELAEQIYRAGLDLGR-GTRLRAAVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+++A PGR + + +G ++ L +LDE D +F D F ++ ++S+
Sbjct: 115 QTRALRQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMF-DMGFLPDIKRILSA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I E D V M +S +E + S Q
Sbjct: 174 LPSERQTLLFSATMPPAISGLAHETLTDPVTVRIGHMAPLST-VEHAIYPISHTQ----- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K LL L+E++ IVF K
Sbjct: 228 -------KAPLLLHLLEEAGKQSVIVFTRTK 251
>gi|332142673|ref|YP_004428411.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552695|gb|AEA99413.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Deep
ecotype']
Length = 480
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 146/273 (53%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V+EGK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLEGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G K ++ + R +IL PT ELA+QV + + S+ +P ++ VV GG
Sbjct: 62 RL----MSG-PKVSANNVRALILTPTRELAAQVEESICAFSEF-LPLKTAVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 116 QMIKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDIKRVLKL 174
Query: 449 SPVTAQYLFVTATLPVEIYN--KLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI K + P + P + +E+ LV D
Sbjct: 175 LPEDRQSLLFSATFSDEITTLAKTITRNP-VSISTAPANTTVD-AVEQHLVTI------D 226
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ +T +AL+ LI++ + +VF K
Sbjct: 227 KSKKT------TALICLIKQQKWEQVLVFSRTK 253
>gi|392954107|ref|ZP_10319659.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
gi|391858006|gb|EIT68536.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
Length = 605
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 116/205 (56%), Gaps = 4/205 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG + ++ ++ + + +P+ IQA A P +++G + A Q+G+GKT A+ LP++ R
Sbjct: 3 FTDLGLDEGLLRAVAAEGYTQPTPIQAQAIPVILQGGDLLAAAQTGTGKTAAFTLPLLHR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q QG+S + P ++L PT ELA+QV + R+ +P ++ V+ GG Q
Sbjct: 63 LIQRRAQGVSGAPK-KPLALVLTPTRELAAQVAQSVRTYGGH-LPLKTTVIFGGVSINPQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVD+L+ATPGR + + + + L + ILDE D + D F ++ +I++
Sbjct: 121 IDVLRHGVDILVATPGRLLDHVGQRTIDLSAVEMLILDEADRML-DMGFIHDIKRVIATL 179
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF 474
P Q L +AT +I KL F
Sbjct: 180 PKQRQNLMFSATFSDDI-RKLAHGF 203
>gi|385209581|ref|ZP_10036449.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385181919|gb|EIF31195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 511
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 32 SFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLLQ 91
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 92 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIDYGK-GLDLRFLAAYGGVSINP 146
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 147 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELNAVFAA 205
Query: 449 SPVTAQYLFVTATLPVEI 466
PV Q L +AT +I
Sbjct: 206 LPVQRQTLLFSATFTDDI 223
>gi|374329697|ref|YP_005079881.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359342485|gb|AEV35859.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 483
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 146/276 (52%), Gaps = 26/276 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E G ++ ++ ++K + + P+ IQ P + EG+ + Q+G+GKT A++LP++
Sbjct: 2 KNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL ++ K+ + R +ILAPT ELASQ+ + R+ + P + V+ GG +
Sbjct: 62 TRLAEDR----KKAAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVA-VIFGGVKPG 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L +G+D++IATPGR + G ++L +LDE D + D F A++ ++
Sbjct: 117 PQLRALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQML-DLGFAPAIRRILG 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q + ++AT+P++I N E + ++ + P +S +E+ DQ
Sbjct: 176 KLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAP----VSRPIEKI------DQ--- 222
Query: 507 KTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKK 539
FLN K++ALL ++ + + + IVF K
Sbjct: 223 ---SVRFLNSSSKRAALLDILSEDDIERAIVFTRTK 255
>gi|300779365|ref|ZP_07089223.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
gi|300504875|gb|EFK36015.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
Length = 434
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L + + ++++ Q + P+ IQ + P +++G+ + Q+G+GKT A+ +P++Q
Sbjct: 2 NFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPDILDGRDFLGCAQTGTGKTAAFSIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +K + + +IL PT ELA Q+ N + K +P + +V+ GG +Q
Sbjct: 62 NLSK------NKIPNKHIKALILTPTRELAIQIEENINAYGKY-LPLKQLVIFGGVKQGN 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+L+ATPGR + I +GI+ L NL +LDE D + D F ++ +I
Sbjct: 115 QEAALKKGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRML-DMGFVHDVKRVIKL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 174 LPQRRQTLFFSATMPGEI 191
>gi|414343394|ref|YP_006984915.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
gi|411028729|gb|AFW01984.1| ATP-dependent RNA helicase [Gluconobacter oxydans H24]
Length = 572
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 137/273 (50%), Gaps = 26/273 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +++ + P+ IQA A P V++G + Q+G+GKT ++ LP++++
Sbjct: 66 FADLGLAEPIMRAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLEK 125
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 126 LSG------SRARARMPRSLILEPTRELALQVADNFKLYGKY-LRLTHALLIGGESMAEQ 178
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L G + L ++DE D + D F ++ ++S
Sbjct: 179 REVLNRGVDVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRML-DMGFIPDIEKIVSLL 237
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ +EE L+ D+
Sbjct: 238 PRNRQTLFFSATMAPEI-RRLADAFLSNPVQITVSRPS--SVATTIEEGLIVVEEDE--- 291
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ AL +L+ V IVFCN+K
Sbjct: 292 ---------KRRALRKLLRSQDVQSAIVFCNRK 315
>gi|298711833|emb|CBJ32858.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 488
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 143/291 (49%), Gaps = 28/291 (9%)
Query: 261 DGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTL 320
+ D F LG D ++++++ F PS+IQ A P ++ G + + A +GSGKTL
Sbjct: 11 EADVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGKTL 70
Query: 321 AYLLPVIQRLR----QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR 376
AYL+P+IQ+L+ Q E G S + PR ++L PT ELA QVL + LS+ F
Sbjct: 71 AYLMPLIQQLKVEEAQAEEGGESIRQTKRPRAIVLVPTRELAMQVLEVAKRLSRS-CKFS 129
Query: 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436
S V GG Q + L VD+++ TPGR + + G + ++DEVD + +
Sbjct: 130 SCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANYVVVDEVDTMLT-Q 188
Query: 437 DFEVALQSL---ISSSPV---TAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRI 488
F ++ L + ++P AQ++FVTATL + L E + + V +H
Sbjct: 189 GFAADIEKLNRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHT 248
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCN 537
P L ++D G +K SAL+ + ++ +T+VFCN
Sbjct: 249 LPSLRHVMIDIKGR------------DKMSALIDIAQQHLKDFKRTLVFCN 287
>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
Length = 436
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 7/199 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S ++ +++ + + PS IQ A P V+EGK + A Q+G+GKT ++LP+++R
Sbjct: 3 FTELGLSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ R +IL PT ELA+Q+ N S+ +P RS VV GG + Q
Sbjct: 63 LSNG-----GRTRPNHVRALILTPTRELAAQIHENAVVYSRH-LPLRSSVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G D+L+ATPGR + L ++ ++ L +LDE D + D F ++ ++
Sbjct: 117 MMALRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFFRDIKKILDLL 175
Query: 450 PVTAQYLFVTATLPVEIYN 468
P Q L +AT EI N
Sbjct: 176 PKNRQSLLFSATFSDEIRN 194
>gi|407926601|gb|EKG19568.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 913
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 136/264 (51%), Gaps = 20/264 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G + +++++ R+ F P+ IQ P V++G+ + ++GSGKT A+++P+I+R
Sbjct: 91 FQAMGLNANVLKAITRKGFSVPTPIQRKTIPLVLDGQDVVGMARTGSGKTAAFVIPMIER 150
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ + S R +I++P+ ELA Q L + L + G R++++ GG + Q
Sbjct: 151 LK-------AHSAKVGARAIIMSPSRELALQTLKVVKELGR-GTDLRTVLLVGGDSLEDQ 202
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ D++IATPGRF+ L E L L +R + DE D LF + F L ++ +
Sbjct: 203 FADMNSNPDIIIATPGRFLHLKVEMELDLSTVRYVVFDEADRLF-EMGFAAQLTEILHAL 261
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE-FLVDCSGDQESDKT 508
P Q L +ATLP + + K+V ++SP LE F S D+E
Sbjct: 262 PPNRQTLLFSATLPKSLVEFARAGLQEPKLVRLDAESKVSPDLESAFFTVKSADKEG--- 318
Query: 509 PETAFLNKKSALLQLIEKSPVSKT 532
A L+ +LQ I K PV +T
Sbjct: 319 ---ALLH----ILQDIIKMPVGET 335
>gi|422562735|ref|ZP_16638412.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|315101547|gb|EFT73523.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
Length = 560
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 139/274 (50%), Gaps = 17/274 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + + ++L+ + P QIQAM+ P VEG I ++G+GKTLA+ + ++Q
Sbjct: 50 SFADLGVREDICQALEGVGIVSPFQIQAMSIPIAVEGTDLIGQARTGTGKTLAFGITILQ 109
Query: 329 RLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R+ +G + +T G P+ +++ PT ELA QV + S + R + V GG +
Sbjct: 110 RITLPGDEGWEELTTKGKPQALVMCPTRELALQVSKDI-STAASVRGTRVLTVYGGVGYE 168
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L+ GVDV++ TPGR + L + L L ++R +LDE D + D F +++LI
Sbjct: 169 SQIDALKAGVDVVVGTPGRLLDLSQRKDLDLSHVRIVVLDEADEML-DLGFLPDVENLIG 227
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+P + Q + +AT+P I P G P ++F+
Sbjct: 228 RTPASRQTMLFSATMPAPIMALARSQLRRPVHVRAEGADTQTTVPDTQQFVY-------- 279
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ L+K + ++++ + V K I+FC K
Sbjct: 280 ----QAHPLDKIEIIGRILQANDVEKVIIFCRTK 309
>gi|313679216|ref|YP_004056955.1| ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
gi|313151931|gb|ADR35782.1| ATP-dependent RNA helicase DbpA [Oceanithermus profundus DSM 14977]
Length = 528
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 10/194 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ELG S+ + +L+ + P+ IQ A P + G + ++G+GKTLA+ LP+ +R
Sbjct: 11 FRELGLSEQALAALEEKGIATPTPIQNEALPAALAGGDVLGLARTGTGKTLAFALPIAER 70
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ PR ++LAPT ELA QV L R + V GG +Q
Sbjct: 71 LEP------SRTPGRPPRALVLAPTRELALQVAGE---LEWVAPHLRIVTVYGGTGYGSQ 121
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ G DV++ATPGR + + G+L L +R A+LDE D + + FE A+++L+ ++
Sbjct: 122 AAALKRGADVVVATPGRAIDYLNRGVLDLAQVRIAVLDEADEMLS-MGFEEAVETLLGAT 180
Query: 450 PVTAQYLFVTATLP 463
P Q L +ATLP
Sbjct: 181 PAERQTLMFSATLP 194
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + ++ +G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 62 LLSKGQ-----RAQAGQVRTLVLTPTRELAAQVAESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QIAKLRHGVDVLVATPGRLMDLYNQKAVKFNQLEILVLDEADRML-DMGFIRDIRKILAI 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKQRQNLMFSATFSDEI 192
>gi|144901078|emb|CAM77942.1| ATP-dependent RNA helicase [Magnetospirillum gryphiswaldense MSR-1]
Length = 570
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 134/271 (49%), Gaps = 20/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ + P+ IQ A P V+ G+ + Q+G+GKT ++ LP+I
Sbjct: 9 SFADLGLSPELLQAVEESGYTTPTPIQQQAIPVVLMGRDVLGCAQTGTGKTASFTLPMI- 67
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E+ ++ + PR +ILAPT ELA+QV N K +++++ GG
Sbjct: 68 -----EILAAGRAKARMPRSLILAPTRELAAQVAENFDKYGKYHKLNKALII-GGESMSD 121
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVDVLIATPGR + + G + L +++ ++DE D + D F +Q ++S
Sbjct: 122 QIAILDRGVDVLIATPGRLLDMFDRGRILLNDVKVLVIDEADRML-DMGFIPDVQRIVSM 180
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATL EI E + K + + +E+FL
Sbjct: 181 LPKMRQTLFFSATLGPEIRKLADEFLMNPKEISVSAQSSTAVTVEQFLAVVD-------- 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++K+ L +I + +FCN+K
Sbjct: 233 ----HIDKRETLRHIIRIENLKNAFIFCNRK 259
>gi|453331363|dbj|GAC86942.1| ATP-dependent RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 572
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 137/273 (50%), Gaps = 26/273 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +++ + P+ IQA A P V++G + Q+G+GKT ++ LP++++
Sbjct: 66 FADLGLAEPIMRAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPMLEK 125
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 126 LSG------SRARARMPRSLILEPTRELALQVADNFKLYGKY-LRLTHALLIGGESMAEQ 178
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L G + L ++DE D + D F ++ ++S
Sbjct: 179 REVLNRGVDVLIATPGRLLDLFGRGGILLTQTSTLVIDEADRML-DMGFIPDIEKIVSLL 237
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ +EE L+ D+
Sbjct: 238 PRNRQTLFFSATMAPEI-RRLADAFLSNPVQITVSRPS--SVATTIEEGLIVVEEDE--- 291
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ AL +L+ V IVFCN+K
Sbjct: 292 ---------KRRALRKLLRSQDVQSAIVFCNRK 315
>gi|379711222|ref|YP_005266427.1| putative ATP-dependent RNA helicase [Nocardia cyriacigeorgica
GUH-2]
gi|374848721|emb|CCF65797.1| Putative ATP-dependent RNA helicase [Nocardia cyriacigeorgica
GUH-2]
Length = 590
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 116/206 (56%), Gaps = 11/206 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F E G +I++++ IQA P + G+ + ++GSGKTLA+ +P+++R
Sbjct: 18 FTEFGVRAELIDAMRAAGITGAFPIQAATLPDTMAGRDVLARGKTGSGKTLAFSIPMVER 77
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
L + S SG P +ILAPT ELA+Q+ + L++ CG R + + GG
Sbjct: 78 L------AGATSKSGQPSGLILAPTRELATQIAATVEMLARPCG--LRVVTIFGGVPVNR 129
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L+ G D+++A PGR L+++G++ L +R +ILDE D + D F A+ ++++
Sbjct: 130 QTRDLRAGADIVVACPGRLEDLMRQGVVSLDAVRISILDEADHMA-DLGFLPAVTRILTA 188
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF 474
+P Q L +ATL E+ ++LV+ F
Sbjct: 189 TPANGQRLLFSATLDNEV-DRLVKRF 213
>gi|269967184|ref|ZP_06181249.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
gi|269828174|gb|EEZ82443.1| ATP-dependent RNA helicase [Vibrio alginolyticus 40B]
Length = 522
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + R +IL PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRANQVRALILTPTRELAAQVQENVFMYSRH-LPLNSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRML-DMGFIRDIRKILALL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKQRQNLLFSATFSDEI 192
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLVQNEPHAKGRRPI---RALILTPTRELAAQVGENVREYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + L+L ++ +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNALKLDSVEVLVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPAKRQNLLFSATFSDDI 194
>gi|372270358|ref|ZP_09506406.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 576
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 10/200 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++ +L + PS IQA + PP++EG+ + Q+G+GKT A+ LP++Q
Sbjct: 10 NFGDLGLSTPILNALADVGYETPSPIQARSIPPLLEGQDLLGMAQTGTGKTAAFALPLLQ 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ +T+ P++++LAPT ELA QV + C SK R++ + GG +
Sbjct: 70 RI---------DTTATHPQLLVLAPTRELALQVATACEKYSKHLPGLRTLSIYGGQGYDS 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G V+I TPGR M I+ G LQL L+ +LDE D + F ++ ++
Sbjct: 121 QIRGLRRGAQVIIGTPGRVMDHIRRGTLQLDRLQSLVLDEADEMLR-MGFIDDVEWILQH 179
Query: 449 SPVTAQYLFVTATLPVEIYN 468
+P Q +AT+P I +
Sbjct: 180 TPAQRQIALFSATMPQAIRH 199
>gi|357620337|gb|EHJ72567.1| hypothetical protein KGM_14750 [Danaus plexippus]
Length = 516
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 131/265 (49%), Gaps = 19/265 (7%)
Query: 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ 336
DY+ L+ Q F +P+ IQ+ +P + GK+ + Q+G+GKTLAYLLP + +L++
Sbjct: 96 DYIKNFLQEQGFTKPTLIQSQGWPIAMAGKNFVGIAQTGTGKTLAYLLPAVIQLKE---- 151
Query: 337 GLSKSTSGS-PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE 395
+K G PR ++LAPT ELA Q+ + + + R + + GG + Q + LQ
Sbjct: 152 --NKGRRGKGPRALVLAPTRELARQIEEVAKDFERL-LNIRCLCIYGGVSRSNQAQQLQR 208
Query: 396 GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQY 455
GVD+LIATPGR + + L +LDE D + D FE ++ + P Q
Sbjct: 209 GVDILIATPGRLNDFLNSRVTTLSRCTYVVLDEADRML-DMGFEPQIRQALEDVPYERQI 267
Query: 456 LFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514
L +AT P E+ + + + +V +G + +++ + C DQ+ DK
Sbjct: 268 LMFSATWPKEVQHLAKDYLGEFVQVNVGSTELTANHNIKQCIYVCEQDQKMDKF------ 321
Query: 515 NKKSALLQLIEKSPVSKTIVFCNKK 539
+++ I + K +VF N K
Sbjct: 322 ---KSIMHEISGNGFGKVLVFTNTK 343
>gi|440715013|ref|ZP_20895574.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
gi|436440072|gb|ELP33446.1| DEAD/DEAH box helicase domain-containing protein [Rhodopirellula
baltica SWK14]
Length = 416
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 132/276 (47%), Gaps = 31/276 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF EL S M ++K F PS IQA P + GK I ++G+GKT A+ +P+++
Sbjct: 9 SFDELDLSPIMRRAVKDAGFTTPSPIQAALIPHALNGKDVIGQARTGTGKTAAFSIPILE 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L S P+ +++ PT ELA QV + L+ GVP V++GG
Sbjct: 69 QLD-------SLEDCRDPQAIVIVPTRELADQVAAEAERLAS-GVPTEIAVLSGGKNMNR 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR ++ G L+ N+ C +LDE D + D F ++ ++
Sbjct: 121 QLRQLENGTQLVVGTPGRVHDHLQRGTLRTNNVWCVVLDEADRML-DIGFRPQIERIMRK 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L ++ATLP + +L E + MH E ++DC D+ + T
Sbjct: 180 CPRNRQTLLLSATLP-PVVRRLAESY----------MH------EPVVIDCCRDEMAVDT 222
Query: 509 PETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
E + +K L L+++ + I+FC K
Sbjct: 223 IEQRYFTIAQDDKVRLLESLLKREKPEQAIIFCRTK 258
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 112/198 (56%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG +I ++ ++ + P+ IQA + P ++EG+ + Q+G+GKT ++ LPV+Q
Sbjct: 2 SFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G +K +G R ++L PT ELA+QV + R + +P S V+ GG
Sbjct: 62 RLMES---GDAKPKAGKVRALVLTPTRELAAQVAESVRDYGQH-LPLSSFVIFGGVNINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++GVD+L+ATPGR + + + + L ++ +LDE D + D F ++ +++
Sbjct: 118 QKQKLRKGVDILVATPGRLLDHVSQNTVDLSSVEILVLDEADRML-DMGFIRDIRKVLAL 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPQQKQTLLFSATFSNEI 194
>gi|399027814|ref|ZP_10729231.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
gi|398074604|gb|EJL65744.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
Length = 418
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 139/270 (51%), Gaps = 17/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L S + +++ + +L P+ IQ + P V+ GK I Q+G+GKT A+ +P+I +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPIVLSGKDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G +K + R +I+ PT ELA Q+ N + K + + GG Q Q
Sbjct: 63 LHR--IVGSTKK-AKQIRALIVTPTRELAVQIGQNFETYGKY-TNLTQLTIFGGVSQNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L++GVD+L+ATPGR + L K+G L L +L +LDE D + D F ++ ++ +
Sbjct: 119 VDALKKGVDILVATPGRLLDLQKQGFLDLDHLHTLVLDEADQML-DMGFVNDVKKIVKLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P+ I +L E+F + P +SP V + + +
Sbjct: 178 PKNRQTLLFSATMPIAI-RELAEMF-----LTDPETVTVSP------VSSTAENVEQRVY 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K++ L LI+ +S +VF K
Sbjct: 226 FVDKTEKRNLLYHLIKTEELSNILVFSRTK 255
>gi|59713334|ref|YP_206109.1| RNA helicase [Vibrio fischeri ES114]
gi|59481582|gb|AAW87221.1| RNA helicase [Vibrio fischeri ES114]
Length = 500
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILAKL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKNRQNLLFSATFSDEI 192
>gi|393777345|ref|ZP_10365637.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
gi|392715686|gb|EIZ03268.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
Length = 516
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 112/201 (55%), Gaps = 10/201 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ + P+ IQ A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVTELGYTVPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
R L G + + +G+ PR ++L PT ELA+QV + R K +P RSMV+ GG
Sbjct: 62 R-----LSGTAAAQAGNRRLPRALVLTPTRELAAQVEESVRDYGKY-LPLRSMVMFGGVG 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q++ L++GVD+++ATPGR + + + L N+ +LDE D + D F ++ +
Sbjct: 116 INPQVDLLRKGVDIVVATPGRLLDHAGQRTIDLSNIEILVLDEADRML-DMGFIHDIRKV 174
Query: 446 ISSSPVTAQYLFVTATLPVEI 466
++ P Q L +AT EI
Sbjct: 175 LALLPQKRQNLLFSATFSDEI 195
>gi|296446324|ref|ZP_06888270.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
gi|296256225|gb|EFH03306.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
Length = 419
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S ++ +++ + +P+ IQ A PP ++G+ + Q+G+GKT A++LP++
Sbjct: 2 TFDELGLSQKVLAAVETSGYTQPTPIQEQAIPPALQGRDILGIAQTGTGKTAAFVLPMLC 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL Q ++ + PR +IL PT ELA+QV + S +K G + V + GG
Sbjct: 62 RLEQ------GRARARMPRTLILEPTRELAAQVEA---SFAKYGANHKLNVALLIGGMAF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + G DVLIATPGR + G L L N+ ++DE D + D F ++ +
Sbjct: 113 GDQEAKIMRGADVLIATPGRLLDFFDRGKLLLTNIEILVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI +L E F V + + + + LV G E
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-TRLTEAFLHNPVRIEVARASSTAATIRQALVATHGHAE- 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSK-TIVFCNKK 539
K+ L +L+ + K I+FCN+K
Sbjct: 230 ----------KRETLRRLLRGAENFKNAIIFCNRK 254
>gi|407770302|ref|ZP_11117672.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
gi|407286580|gb|EKF12066.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Thalassospira xiamenensis M-5 = DSM 17429]
Length = 609
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 147/275 (53%), Gaps = 28/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +LK + + P+ IQA A P ++EGK + Q+G+GKT A+ LP++ R
Sbjct: 4 FSDLGLAEPVLRALKHEGYDAPTPIQAQAIPSLLEGKDLLGIAQTGTGKTAAFALPILDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E + +KS RV++LAPT ELA+Q+ + R+ + + VV GG Q
Sbjct: 64 LSKNETRTPAKSC----RVLVLAPTRELAAQIGDSFRAYGRF-MNTTVAVVVGGVAHGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVDVL+ATPGR + I G L+L N+ +LDE D + D F ++ +I
Sbjct: 119 IKAITPGVDVLVATPGRLLDHIDAGKLKLNNVDVVVLDEADHML-DLGFLPPIKRIIKML 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P + Q LF +AT+P +I ++ D KV + P + QE +
Sbjct: 178 PRSRQNLFFSATMPSQIGQLAGDMLSDPVKVSVTP---------------VATTQE--RV 220
Query: 509 PETAFL---NKKSALL-QLIEKSPVSKTIVFCNKK 539
++ ++ N+K LL +L++ +T+VF K
Sbjct: 221 EQSVYMIEKNRKRQLLAELLDNPLFKRTLVFTRTK 255
>gi|295689524|ref|YP_003593217.1| DEAD/DEAH box helicase [Caulobacter segnis ATCC 21756]
gi|295431427|gb|ADG10599.1| DEAD/DEAH box helicase domain protein [Caulobacter segnis ATCC
21756]
Length = 524
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I +
Sbjct: 4 FSDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDK 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ ++ + PR +++APT ELA QV S+ +K G ++ GG Q
Sbjct: 64 LQS------GRAKARMPRALVIAPTRELADQVASSFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + LV K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K+ AL LIEK+ + IVFCN+K+
Sbjct: 227 SSDPKAKRLALRALIEKAQIETGIVFCNRKT 257
>gi|421615849|ref|ZP_16056868.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
gi|409782031|gb|EKN61598.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
Length = 441
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 116/208 (55%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G ++ S S R ++L PT ELA QV + R+ + +P R+ V GG
Sbjct: 62 RL---TLEG-ARVASNSVRALVLVPTRELAEQVHESFRAYGQ-DLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L L S+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRML-DLGFADELDQLFSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKKRQTLLFSATFSEPIRQMARELLRD 203
>gi|452978780|gb|EME78543.1| hypothetical protein MYCFIDRAFT_10719, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 855
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 9/225 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK +G + ++++++ R+ F P+ IQ P +++G+ + ++GSGKT A+++P+I+
Sbjct: 30 AFKSMGLNAHLLKAITRKGFTVPTPIQRKTIPLIMDGQDVVGMARTGSGKTAAFVIPMIE 89
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ S S R V+L+P+ ELA Q L + + + G R+ ++ GG +
Sbjct: 90 KLK-------SHSAKVGARAVVLSPSRELALQTLKVVKEMGR-GTDLRTTLLVGGDSLED 141
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q ++ D++IATPGRF L E L+L +++ + DE D LF + F L ++ S
Sbjct: 142 QFGSMASNPDIIIATPGRFEHLKVEMGLELSSVKYVVFDEADRLF-EMGFAAQLHEIMYS 200
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
P Q L +ATLP + D K+V +I+PGL+
Sbjct: 201 LPSNRQTLLFSATLPKSLVEFARAGLQDPKLVRLDAESKIAPGLQ 245
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 117/212 (55%), Gaps = 6/212 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG + ++ +++ Q + P+ IQA A P V+EGK + + Q+G+GKT + LP++
Sbjct: 2 SFETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +G + PR ++L PT ELA+QV + + K VP R+ VV GG + +
Sbjct: 62 KLASAG-RGQGRR---PPRALVLTPTRELAAQVAESIATYGKY-VPLRTAVVFGGVKIQP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ LQ GVDVL+ATPGR + + + + L + +LDE D + D F ++ L++
Sbjct: 117 QIHKLQRGVDVLVATPGRLLDHVGQRTVDLSQVEVLVLDEADRML-DMGFIHDIRRLLNE 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480
P Q L +AT EI ++ D +V
Sbjct: 176 LPAERQTLMFSATFSNEIKKLADDILRDPVLV 207
>gi|428183253|gb|EKX52111.1| hypothetical protein GUITHDRAFT_65410, partial [Guillardia theta
CCMP2712]
Length = 442
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 144/304 (47%), Gaps = 32/304 (10%)
Query: 249 TDCPKQ------RHKYSADGD----FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA 298
+ CPK+ H+ + G FF+ F+EL + + L R F PS IQA
Sbjct: 38 SSCPKEVVEWRKSHEITVAGGCPDPFFT---FRELPVPQVLQDQLLRAGFSGPSVIQAQT 94
Query: 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358
+P ++G+ I ++GSGKTL +L+P + + L K+ P +++LAPT ELA
Sbjct: 95 WPAALKGRDVIGVAKTGSGKTLGFLVPGFMHIMNDGL----KNPRMGPLILVLAPTRELA 150
Query: 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQL 418
+Q+ C C + RS V GG + QL L+ G ++IATPGR +++G++ L
Sbjct: 151 TQIQEECIKFGSC-IHIRSCCVYGGAPKGPQLRELRSGAHIVIATPGRLNDFLEQGMINL 209
Query: 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-- 476
+ + DE D + D FE ++ ++ P Q LF TAT P E+ +L F D
Sbjct: 210 QQVSYLVFDEADRML-DMGFEPQIRKILDRIPGKRQTLFYTATWPKEV-RRLASDFLDKP 267
Query: 477 CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVF 535
C V +G + LV + K + F K L +I V S+ I+F
Sbjct: 268 CIVYIGD---------TDTLVANKDVTQVIKVIDDRFGEKDMILQDIIRGEGVGSRIIIF 318
Query: 536 CNKK 539
C+ K
Sbjct: 319 CSTK 322
>gi|58039465|ref|YP_191429.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
gi|58001879|gb|AAW60773.1| ATP-dependent RNA helicase [Gluconobacter oxydans 621H]
Length = 432
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 143/279 (51%), Gaps = 26/279 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S ++F +L + ++ +L +++P+ IQA + P ++EG+ + Q+G+GKT ++ LP
Sbjct: 5 SAQAFADLALAPTLLRALDEAGYVKPTPIQAQSIPLLLEGRDLLGLAQTGTGKTASFALP 64
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL + RV++LAPT EL SQ+ S S+ P R + GG
Sbjct: 65 LLHRLAATP----RPAPKNGARVLVLAPTRELVSQIADGFESFSRHQ-PVRVTTIFGGVS 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q++ L+EGVD+++A PGR + LI++G+ L L +LDE D + D F ++ +
Sbjct: 120 QVHQVKALEEGVDIIVAAPGRLLDLIEQGLCDLSQLETLVLDEADQML-DMGFAKPIERI 178
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+++ P + +AT+P I LVE ++ P I+P
Sbjct: 179 VATLPEDRHTVLFSATMPKSIA-ALVE-----SLLRNPAKVEIAP----------PSSTV 222
Query: 506 DKTPETA-FLN---KKSALLQLIEKSPVSKTIVFCNKKS 540
D+ ++ FLN KK+ALL + + + +VF +K+
Sbjct: 223 DRIAQSVMFLNASDKKAALLAQLRTPGIGQAVVFTLQKN 261
>gi|421497715|ref|ZP_15944866.1| putative ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407183271|gb|EKE57177.1| putative ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 464
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 136/271 (50%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGGRRQV----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ GVD+L+ATPGR + L+ +G L L L +LDE D + D F ++ ++++
Sbjct: 117 NLDAIKLGVDILVATPGRLLDLLTQGALTLSALEVLVLDEADRML-DMGFITDIRRIMNA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I ++ D P + + P + + DQ + +
Sbjct: 176 LPEERQTLLFSATFSNDIKALADDLLND------PTLIEVDPS------NTAADQVTQRV 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 224 IQVDRERRREMLSHMIGRGNWQRVLVFVRTK 254
>gi|332186948|ref|ZP_08388689.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
gi|332012958|gb|EGI55022.1| DEAD/DEAH box helicase family protein [Sphingomonas sp. S17]
Length = 459
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 117/208 (56%), Gaps = 7/208 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG ++ ++ +L+ + + P+ IQ + P ++EG+ + Q+G+GKT A++LP IQ
Sbjct: 2 SFSELGLAEPLVRALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + L R+++LAPT ELASQ+ N + +K V GG
Sbjct: 62 RLVEANKRVLPTHC----RMLVLAPTRELASQIADNAKGYAKFS-KLAVATVFGGTSINK 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
++L GVD+L+ATPGR + L+++G L L + +LDE D + D F AL+ ++
Sbjct: 117 NRQDLSRGVDILVATPGRLIDLVEQGFLNLSMIEILVLDEADQML-DLGFIHALRRIVKM 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q LF +AT+P I + L + F D
Sbjct: 176 IPRKRQTLFFSATMPAAIRD-LADKFLD 202
>gi|330009971|ref|ZP_08306668.1| ATP-dependent RNA helicase RhlE, partial [Klebsiella sp. MS 92-3]
gi|328534645|gb|EGF61216.1| ATP-dependent RNA helicase RhlE [Klebsiella sp. MS 92-3]
Length = 509
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 5/209 (2%)
Query: 258 YSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
++ G F SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+G
Sbjct: 49 FTGPGRFGVVMSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTG 108
Query: 318 KTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
KT + LP++QRL Q E + R +IL PT ELA+QV N R SK + RS
Sbjct: 109 KTAGFTLPLLQRLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRS 164
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
+VV GG Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D
Sbjct: 165 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMG 223
Query: 438 FEVALQSLISSSPVTAQYLFVTATLPVEI 466
F ++ +++ P Q L +AT EI
Sbjct: 224 FIHDIRRVLAKLPARRQNLLFSATFSDEI 252
>gi|262041112|ref|ZP_06014330.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041562|gb|EEW42615.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 519
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 5/209 (2%)
Query: 258 YSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSG 317
++ G F SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+G
Sbjct: 59 FTGPGRFGVVMSFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTG 118
Query: 318 KTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377
KT + LP++QRL Q E + R +IL PT ELA+QV N R SK + RS
Sbjct: 119 KTAGFTLPLLQRLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRS 174
Query: 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED 437
+VV GG Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D
Sbjct: 175 LVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMG 233
Query: 438 FEVALQSLISSSPVTAQYLFVTATLPVEI 466
F ++ +++ P Q L +AT EI
Sbjct: 234 FIHDIRRVLAKLPARRQNLLFSATFSDEI 262
>gi|153830178|ref|ZP_01982845.1| ATP-dependent RNA helicase RhlE, partial [Vibrio cholerae 623-39]
gi|148874357|gb|EDL72492.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae 623-39]
Length = 230
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 110/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LRQ + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLRQGQTQRKKRV-----RALILVPTRELAMQVAEKVDQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|398392503|ref|XP_003849711.1| hypothetical protein MYCGRDRAFT_75563 [Zymoseptoria tritici IPO323]
gi|339469588|gb|EGP84687.1| hypothetical protein MYCGRDRAFT_75563 [Zymoseptoria tritici IPO323]
Length = 833
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 18/262 (6%)
Query: 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332
+G + ++++++ R+ F P+ IQ P +++G+ + ++GSGKT A+++P+I++L+
Sbjct: 1 MGLNTHLLKAITRKGFSVPTPIQRKTIPLILDGQDVVGMARTGSGKTAAFVIPMIEKLK- 59
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
S S R ++L+P+ ELA Q L + +S+ G R+ ++ GG + Q +
Sbjct: 60 ------SHSAKVGARAIVLSPSRELALQTLKVVKEMSR-GTDLRTTLLVGGDSLEEQFSS 112
Query: 393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
+ D++IATPGRF L E L+L +++ + DE D LF + F L ++ S P
Sbjct: 113 MASNPDIIIATPGRFEHLKVEMSLELSSVKYVVFDEADRLF-EMGFAAQLLEIMHSLPSN 171
Query: 453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512
Q L +ATLP + D K+V +I+PGL+ ++ E A
Sbjct: 172 RQTLLFSATLPKSLVEFARAGLQDPKLVRLDAESKIAPGLQSAFFTVKRAEK-----EGA 226
Query: 513 FLNKKSALLQLIEKSPVSKTIV 534
LN +LQ I K P +T+
Sbjct: 227 LLN----ILQDIIKMPTGETVA 244
>gi|148261622|ref|YP_001235749.1| DEAD/DEAH box helicase [Acidiphilium cryptum JF-5]
gi|146403303|gb|ABQ31830.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
Length = 525
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 150/317 (47%), Gaps = 31/317 (9%)
Query: 235 WRS---GGSIH-------NLQYEPT--DCPKQRHKYSADGDFFSRKSFKELGCSDYMIES 282
WR G+ H L YE + C H+ S D + F LG ++ ++ +
Sbjct: 13 WRRHPPAGAFHAGRAPSGRLVYEASCHPCAAPSHRRSRD-ESAVLTDFTTLGLAEPLLRA 71
Query: 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342
+ Q++ P+ IQA + P ++EG + Q+G+GKT A++LP++ R+ + ++
Sbjct: 72 ISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHRIAANRARPAPRAC 131
Query: 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIA 402
R ++LAPT ELA+Q+ R+ K P ++V+ GG + Q ++ GVD+L+A
Sbjct: 132 ----RALVLAPTRELATQIADAARTYGKFTRPSVAVVI-GGAKPGPQARRMESGVDLLVA 186
Query: 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462
TPGR + + G+++L + +LDE D + D F A++ +++ P Q + +AT+
Sbjct: 187 TPGRLLDHVAAGVIRLDAVETVVLDEADQML-DLGFIPAIRQIMAKLPRQRQAVMFSATM 245
Query: 463 PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQ 522
P I E D + ++ +E VD Q PE KK L
Sbjct: 246 PKPIRALAGEFLRDPR--------EVAVSVESKPVDRIDQQVLLLAPE----EKKDKLAW 293
Query: 523 LIEKSPVSKTIVFCNKK 539
L+ V + IVF K
Sbjct: 294 LLADVAVERAIVFTRTK 310
>gi|401827392|ref|XP_003887788.1| ATP-dependent RNA helicase [Encephalitozoon hellem ATCC 50504]
gi|392998795|gb|AFM98807.1| ATP-dependent RNA helicase [Encephalitozoon hellem ATCC 50504]
Length = 493
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 138/274 (50%), Gaps = 21/274 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F++ G ++E L + F P+ IQA +P + G+ + Q+GSGKTL+++LP +
Sbjct: 87 QKFEDAGFPSRVVEDLAAKGFEGPTPIQAQGWPMALSGRDMVGIAQTGSGKTLSFILPAL 146
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQ 386
+ ++ Q L + P V++LAPT EL Q+ CG+ RS V GG
Sbjct: 147 --VHAKDQQPLRRGD--GPIVLVLAPTRELVMQIKKVADEF--CGMFNLRSTAVYGGASS 200
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q+ L EG +V+IATPGR + L +G L + +LDE D + D FE L+ +I
Sbjct: 201 QPQIRALHEGAEVVIATPGRLIDLHDQGHAPLGRVTFLVLDEADRML-DMGFEPQLRKII 259
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ + Q L +AT P E+ D +VV+G + + +++ + CSG ++
Sbjct: 260 PKTNGSRQTLMWSATWPREVRGLAESYMSDYIQVVIGNEELKTNSKIKQVIEVCSGREKE 319
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK LL +++K K IVFCN K
Sbjct: 320 DK------------LLGVLDKFKGDKVIVFCNMK 341
>gi|1279685|emb|CAA96458.1| unknown [Saccharomyces cerevisiae]
gi|1431010|emb|CAA98590.1| DBP10 [Saccharomyces cerevisiae]
Length = 995
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + + K +HK + SF G S ++ ++KR+ F +P+ IQ P +
Sbjct: 121 NEYFSTNNLEKTKHK---------KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 171
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP++++L+ S S R VIL+P+ ELA Q
Sbjct: 172 LQSRDIVGMARTGSGKTAAFILPMVEKLK-------SHSGKIGARAVILSPSRELAMQTF 224
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + ++ G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 225 NVFKDFAR-GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVE 283
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
+ DE D LF + F+ L L++S P T Q L +ATLP + + + + +V
Sbjct: 284 YVVFDEADRLF-EMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRL 342
Query: 483 PGMHRISPGLEE-FLVDCSGDQESD 506
++S LE FL + D+E++
Sbjct: 343 DAETKVSENLEMLFLSSKNADREAN 367
>gi|407701321|ref|YP_006826108.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
gi|407250468|gb|AFT79653.1| ATP-dependent RNA helicase RhlE [Alteromonas macleodii str. 'Black
Sea 11']
Length = 483
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 143/279 (51%), Gaps = 35/279 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++++++++ F PS IQ A P V++GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFTQLGLAEPLLKAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSP------RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
RL SG P R +IL PT ELA+QV + + S+ +P ++ VV G
Sbjct: 62 RL-----------MSGQPVSGNNVRALILTPTRELAAQVEESISAFSEF-LPLKTAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G Q+ L++GVDVLIATPGR + L ++ ++ L +LDE D + D F +
Sbjct: 110 GVGINPQMMKLRKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRML-DMGFIHDI 168
Query: 443 QSLISSSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
+ ++ P Q L +AT EI K + P + P + +E+ LV
Sbjct: 169 KRVLKLLPQERQSLLFSATFSDEITALAKTITRNP-VSISTAPANTTVE-AVEQHLVTI- 225
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK+ +T +AL+ LI++ + +VF K
Sbjct: 226 -----DKSKKT------TALICLIKQQKWEQVLVFSRTK 253
>gi|386391490|ref|ZP_10076271.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
gi|385732368|gb|EIG52566.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
Length = 493
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 129/271 (47%), Gaps = 21/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF + E++KR + P+ IQA A P V EG+ + Q+G+GKT A+LLP+I
Sbjct: 2 SFDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +KS R +ILAPT ELA Q+ L + G R+ V+ GG
Sbjct: 62 RLM------TTKSEKRGVRALILAPTRELAEQIYRAGLDLGR-GTRLRAAVIYGGVGMFP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD+++A PGR + + +G ++ L +LDE D +F D F ++ ++S+
Sbjct: 115 QTRALRQGVDIIVACPGRLLDHMNQGNVRFDALETLVLDEADHMF-DMGFLPDIKRILSA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I E D V M +S +E + S Q
Sbjct: 174 LPSERQTLLFSATMPPAISGLAHETLTDPITVRIGHMAPLST-VEHAIYPISHTQ----- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K LL L+E++ IVF K
Sbjct: 228 -------KAPLLLHLLEEAGKQSVIVFTRTK 251
>gi|348030411|ref|YP_004873097.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
gi|347947754|gb|AEP31104.1| ATP-dependent RNA helicase [Glaciecola nitratireducens FR1064]
Length = 414
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++++L+ Q + PS IQA A P V+ + Q+G+GKT A+ LP+IQ
Sbjct: 2 SFSSLGLCDELLKTLQEQGYESPSPIQAKAIPVVLNHHDVMAVAQTGTGKTAAFTLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L G S + SPR +++ PT ELA+QV N ++ S+ + RS V GG R +
Sbjct: 62 L-----LAGGENSQAQSPRALVIVPTRELAAQVGENVQNYSRH-MNIRSAAVFGGVRIEP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ LQ GVD+L+ATPGR + L +G L L +LDE D + D F ++ +
Sbjct: 116 QIFQLQNGVDLLVATPGRLIDLFNQGALNFERLDILVLDEADRML-DLGFIDDIRRIQML 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P+ Q L +AT +I
Sbjct: 175 LPIKRQTLMFSATFSKQI 192
>gi|104779961|ref|YP_606459.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95108948|emb|CAK13644.1| putative ATP-dependent RNA helicase, DEAD box family (RhlE)
[Pseudomonas entomophila L48]
Length = 443
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 114/198 (57%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L+ ++ P+ +QA A P V+ G+ + A Q+G+GKT + LPV+Q
Sbjct: 2 NFAKLGLIEPLVRTLQALDYTTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L+G K + S R ++L PT ELA QV +N R ++ +P + V GG
Sbjct: 62 RL---ALEG-EKVAANSVRALVLVPTRELAEQVHANVREYAE-NLPLSTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L ++ ++ ++ +LDE D + D F LQ++ ++
Sbjct: 117 QMMRLRRGVDLLVATPGRLLDLFRQNAIKFGQVQTLVLDEADRML-DLGFAEELQAVYAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPRKRQTLLFSATFSDQI 193
>gi|414176153|ref|ZP_11430382.1| hypothetical protein HMPREF9695_04028 [Afipia broomeae ATCC 49717]
gi|410886306|gb|EKS34118.1| hypothetical protein HMPREF9695_04028 [Afipia broomeae ATCC 49717]
Length = 482
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 144/271 (53%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +LK +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALKEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 63 RLLENRIKPQPKTC----RVLVLSPTRELSGQILESFNAYGRH-IKLTSALAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G+DV++ATPGR + +++ L+L + +LDE D + D F ++ +++
Sbjct: 118 QVRSVMPGIDVMVATPGRLLDMVQGNALKLGQVEFLVLDEADRML-DMGFINDIRKIVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P +I + D +++ P ++P V + ++ + K
Sbjct: 177 LPTKRQTLFFSATMPKDIAD-----LAD-QMLNNPARVAVTP------VSSTVERITQKV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K + L Q+++ V++ +VF K
Sbjct: 225 LQVDHSAKPAILAQILKTEQVNRALVFTRTK 255
>gi|389876606|ref|YP_006370171.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388527390|gb|AFK52587.1| DEAD/DEAH box helicase domain-containing protein [Tistrella mobilis
KA081020-065]
Length = 528
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 139/272 (51%), Gaps = 19/272 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S+ ++ +L + ++ P+ IQ A P +V G+ + Q+G+GKT A+ LP++
Sbjct: 3 NFSELGLSETLLRALDQAGYVTPTPIQEQAIPHLVAGRDLLGIAQTGTGKTAAFALPILN 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + + + G R +ILAPT ELA+Q+ N ++ ++ + VV GG
Sbjct: 63 RIAADRNRA---NMPGRTRCLILAPTRELAAQIADNIKTYARH-MRVHVAVVVGGVSAGP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + G+D+L+ATPGR + + G+L+L +LDE D + D F + ++ +++
Sbjct: 119 QIRAIARGLDILVATPGRLVDHLDSGVLKLDRTEVVVLDEADHML-DLGFIIPIRRILAK 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI E+ D +V + P V + ++ +
Sbjct: 178 LPTRRQSLFFSATMPKEIGALAGEMLRDPIEVSVTP-------------VATTAERVEQR 224
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L++L+E V + +VF K
Sbjct: 225 VVRIEPARKRGVLIELLESEGVHRALVFTRTK 256
>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 545
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 134/272 (49%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG +++++K + + P+ IQA A P ++ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L GL++ PR +IL PT ELA QV + ++ ++ V R V GG R +
Sbjct: 62 IL------GLTRGNGHHPRALILTPTRELALQVGESIKAYARK-VSLRCTVAFGGVRIEP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G+D+L+ATPGR + L + L L ++ + DE D + D F + +++
Sbjct: 115 QIARLERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRML-DLGFSGEINAILDL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P + + +AT Y ++ K++ P I+P + + K
Sbjct: 174 LPTVRRTMLFSAT-----YTPQIKALA-AKMLDKPEYIEITPDT------AAAEAVQQKV 221
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
NK LL LIEK + +VF ++
Sbjct: 222 HHVNKDNKLPLLLHLIEKQKQDRILVFARTRT 253
>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 568
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 138/271 (50%), Gaps = 15/271 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + S+ R ++L PT ELA+QV + R+ K + +S V+ GG
Sbjct: 62 RLAQGQAP-TSRFGGRGVRALVLTPTRELAAQVEESVRAYGKH-LDIKSTVIFGGVGMNP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E ++ GVDVL+ATPGR + L ++G + L + +LDE D + D F ++ +++
Sbjct: 120 QIERIKRGVDVLVATPGRLLDLQQQGFMDLSQVEILVLDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D + + +++P + + + S
Sbjct: 179 LPKAKQSLLFSATFSDEIRELAAGLLNDPQSI------QVTP------RNTTVQRISQVI 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK LL +I++ S+ +VF K
Sbjct: 227 HPVGRGKKKQVLLHIIQQHDWSQVLVFTRTK 257
>gi|323342110|ref|ZP_08082343.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464535|gb|EFY09728.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 475
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 110/197 (55%), Gaps = 5/197 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG ++ ++++L Q + +P+ IQ A P +++ I Q+G+GKT A+ +P +Q
Sbjct: 3 FKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ + ++ R ++L PT ELA Q+ N K + RS VV GG Q+ Q
Sbjct: 63 LKE---KAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKY-MDLRSTVVFGGVAQRYQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVD LIATPGR L+ +G + L + ILDE D + D F ++ +I
Sbjct: 119 VKALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDEADRML-DMGFINDVKRIIKKL 177
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT+P EI
Sbjct: 178 PKKKQTLLFSATMPSEI 194
>gi|441477759|dbj|BAM75192.1| vasa-like gene-1, partial [Pinctada fucata]
Length = 476
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 114/203 (56%), Gaps = 6/203 (2%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F+E G +D + ++K+ NF +P+ +Q + P ++ G+ + Q+GSGKT A+LLPV+
Sbjct: 27 KNFEEAGLADSFLTNVKKANFEKPTPVQKYSIPIIMAGRDLMACAQTGSGKTAAFLLPVL 86
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + L S S P+ +++APT ELA Q+ + R + G R +V+ GG
Sbjct: 87 TGMTKSGLNSSSFSQVQEPQALVIAPTRELAVQIYMDARKFAH-GTMLRPVVLYGGTSVG 145
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ +++G ++L+ TPGR M +I +G + L ++ ILDE D + D F ++ +++
Sbjct: 146 YQIRQVEQGTNILVGTPGRLMDIIGKGKISLEKIKYLILDEADRML-DMGFGPEIKKIVT 204
Query: 448 S----SPVTAQYLFVTATLPVEI 466
S Q L +AT P E+
Sbjct: 205 EMGMPSKTDRQTLMFSATFPKEV 227
>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 598
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 116/200 (58%), Gaps = 3/200 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + +++++ + + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ +K R ++L PT ELA+QV + RS +K + S V+ GG K
Sbjct: 62 RLSQGQVP-RNKFGGKGIRALVLTPTRELAAQVEESVRSYAKY-LDINSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ +++GVD+L+ATPGR + L ++G + L + +LDE D + D F ++ +++
Sbjct: 120 QIDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEIYN 468
P Q L +AT EI +
Sbjct: 179 VPKDKQSLLFSATFSDEIRD 198
>gi|115361005|ref|YP_778142.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115286333|gb|ABI91808.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 511
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 9/223 (4%)
Query: 244 LQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
L +P P R A + SF LG D ++ +L+ N+ P+ +Q A P V+
Sbjct: 14 LNRKPVSAPTARIAVLARN---TSMSFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVL 70
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
GK + Q+G+GKT + LP++QRL Q QG + S S RV++L PT ELA QVL
Sbjct: 71 GGKDVMAGAQTGTGKTAGFALPLLQRLVQ---QGPAVS-SNRARVLVLVPTRELAEQVLQ 126
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
+ + K G+ R + GG Q+ L++GVDVL+ATPGR + L ++ +Q +
Sbjct: 127 SFVAYGK-GLDLRFLAAYGGVSINPQMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVET 185
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
+LDE D + D F L ++ ++ PV Q L +AT +I
Sbjct: 186 LVLDEADRML-DLGFARELNAVFAALPVQRQTLLFSATFTDDI 227
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 8/199 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S ++++L + + P+ IQA A PPV+EG+ + Q+G+GKT A++LP I
Sbjct: 5 TFDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSID 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
RLR+ + Q KS R+++LAPT ELA Q+ + + + G+ S+V GG
Sbjct: 65 RLREADNQTPFKSC----RMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIV--GGTSVG 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
L G D+L+ATPGR + LI + +L + +LDE D + D F AL+ +
Sbjct: 119 KDRNKLHRGTDILVATPGRLLDLIDQKAFKLNAVEILVLDEADQML-DLGFIHALRQIND 177
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P +I
Sbjct: 178 LVPAERQTLFFSATMPKQI 196
>gi|197337698|ref|YP_002157744.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197314950|gb|ACH64399.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 496
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILAKL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKNRQNLLFSATFSDEI 192
>gi|423687487|ref|ZP_17662290.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
gi|371493270|gb|EHN68873.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri SR5]
Length = 500
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ Q + PS IQ A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAVEEQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ R ++L PT ELA+QV + SK +P S VV GG + Q
Sbjct: 63 LSNGPKRKFNQV-----RALVLTPTRELAAQVHESVEKYSK-NLPLTSDVVFGGVKVNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 117 MQRLRRGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML-DMGFIHDIKKILAKL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKNRQNLLFSATFSDEI 192
>gi|116626579|ref|YP_828735.1| DEAD/DEAH box helicase [Candidatus Solibacter usitatus Ellin6076]
gi|116229741|gb|ABJ88450.1| DEAD/DEAH box helicase domain protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 422
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 114/205 (55%), Gaps = 12/205 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL S + +L + NF P+ IQ++A P + GK + Q+G+GKTLA+LLP IQ
Sbjct: 3 NFSELPLSAQLKSNLAKNNFTEPTPIQSLAIEPALAGKDIVATAQTGTGKTLAFLLPTIQ 62
Query: 329 RLRQEELQ-GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q G+ R +IL PT ELA Q+ +++ G R+ V GG ++
Sbjct: 63 LLSTEPRQPGV--------RALILTPTRELALQINEALLQIAR-GTGIRAAVAVGGLNER 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL +++ G ++++ATPGR + G++ L +R ILDE D + D F ++ +I+
Sbjct: 114 SQLRDIRGGANIVVATPGRLYDFMSRGLINLTTVRMLILDESDRML-DMGFLPTIKRIIA 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVE 472
+ P Q L +ATL + +LVE
Sbjct: 173 AMPAERQTLLFSATLESSV-KQLVE 196
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 136/273 (49%), Gaps = 19/273 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANASASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q E L+ G +VL+ATPGR + +++ + L + +LDE D + D F L+ +I
Sbjct: 135 PQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML-DMGFLPDLERIIR 193
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT EI KL + + V + + + + + SGD
Sbjct: 194 LLPTQRQGLLFSATFSNEI-RKLGRSYLNHPVEIEVAARNATATTITQIAYKMSGDA--- 249
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K++A++ L++ + + IVF N K
Sbjct: 250 ---------KRAAVVHLVKSRGLKQVIVFSNTK 273
>gi|336066223|ref|YP_004561081.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296169|dbj|BAK32040.1| ATP-dependent RNA helicase RhlE [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 475
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 110/197 (55%), Gaps = 5/197 (2%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG ++ ++++L Q + +P+ IQ A P +++ I Q+G+GKT A+ +P +Q
Sbjct: 3 FKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ + ++ R ++L PT ELA Q+ N K + RS VV GG Q+ Q
Sbjct: 63 LKE---KAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKY-MDLRSTVVFGGVAQRYQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVD LIATPGR L+ +G + L + ILDE D + D F ++ +I
Sbjct: 119 VKALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDEADRML-DMGFINDVKRIIKKL 177
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT+P EI
Sbjct: 178 PKKKQTLLFSATMPSEI 194
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 144/289 (49%), Gaps = 28/289 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++ + P+ IQ A P V+ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R +ILAPT ELA QV + ++ SK VP RS + GG
Sbjct: 62 RLARH------ASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKY-VPLRSTCIYGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
K Q+++L+ G+++++ATPGR + +++ +QL + +LDE D + D F ++
Sbjct: 115 VDMKPQIQDLRNGIEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRML-DMGFIPDIR 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYN---------KLVEVFPDCKV--VMGPGMHRISPGL 492
++ P Q L +AT EI +L+EV V + +H +S GL
Sbjct: 174 RILDLLPAARQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGL 233
Query: 493 EEFLVDCSGDQESDKTPETAFLNKK---SALLQLIEKSPVSKTIVFCNK 538
+ L+ E D T F+ K S L +E+ ++ + +K
Sbjct: 234 KRNLLAHLLRHEPD-TQALVFVATKLACSRLAHFLERHGIAADAIHGDK 281
>gi|259145212|emb|CAY78476.1| Dbp10p [Saccharomyces cerevisiae EC1118]
gi|349577043|dbj|GAA22212.1| K7_Dbp10p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 995
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + + K +HK + SF G S ++ ++KR+ F +P+ IQ P +
Sbjct: 121 NEYFSTNNLEKTKHK---------KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 171
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP++++L+ S S R VIL+P+ ELA Q
Sbjct: 172 LQSRDIVGMARTGSGKTAAFILPMVEKLK-------SHSGKIGARAVILSPSRELAMQTF 224
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + ++ G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 225 NVFKDFAR-GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVE 283
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
+ DE D LF + F+ L L++S P T Q L +ATLP + + + + +V
Sbjct: 284 YVVFDEADRLF-EMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRL 342
Query: 483 PGMHRISPGLEE-FLVDCSGDQESD 506
++S LE FL + D+E++
Sbjct: 343 DAETKVSENLEMLFLSSKNADREAN 367
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 136/275 (49%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G + ++ +L Q ++ P+ IQA A P V++G + A Q+G+GKT + LP+IQ
Sbjct: 38 FEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGKTAGFSLPIIQL 97
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L ++S SP R +IL PT ELA QV N ++ S+ P RS+VV GG
Sbjct: 98 LMAH------ANSSASPARHPVRALILTPTRELADQVADNVKAYSRH-TPLRSVVVFGGV 150
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + I++ L L + ++DE D + D F LQ
Sbjct: 151 DMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRML-DMGFLPDLQR 209
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F V + + R + E +E
Sbjct: 210 IINLLPKQRQNLMFSATFSPEI-KKLAATFLKDPVTI--EVARSNATAENVTQIVYKVEE 266
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK +++ ++ L Q+ IVF N K
Sbjct: 267 GDKGDAVSYIIRERGLKQV---------IVFSNTK 292
>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
[Encephalitozoon cuniculi GB-M1]
gi|74664187|sp|Q8SRB2.1|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
[Encephalitozoon cuniculi GB-M1]
gi|449328762|gb|AGE95038.1| p68-like protein [Encephalitozoon cuniculi]
Length = 495
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 139/275 (50%), Gaps = 23/275 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E G S ++ SL + F P+ IQ +P + G+ + Q+GSGKTL+++LP +
Sbjct: 87 QKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPAL 146
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQ 386
+ ++ Q L + P V++LAPT EL Q+ CG+ RS V GG
Sbjct: 147 --VHAKDQQPLRRGD--GPIVLVLAPTRELVMQIKKVVDEF--CGMFNLRSTAVYGGASS 200
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q+ L EG +V+IATPGR + L +G L + +LDE D + D FE L+ +I
Sbjct: 201 QPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRML-DMGFEPQLRKII 259
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+ Q L +AT P E+ L E + + +VV+G + + +++ + CSG ++
Sbjct: 260 PKTNANRQTLMWSATWPREV-RGLAESYMNEYIQVVVGNEELKTNSKIKQIVEVCSGREK 318
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK L+ +++ K IVFCN K
Sbjct: 319 EDK------------LIGVLDNFKGDKVIVFCNMK 341
>gi|330443505|ref|NP_010253.2| Dbp10p [Saccharomyces cerevisiae S288c]
gi|341940422|sp|Q12389.2|DBP10_YEAST RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
box protein 10
gi|329138871|tpg|DAA11821.2| TPA: Dbp10p [Saccharomyces cerevisiae S288c]
gi|392300086|gb|EIW11177.1| Dbp10p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 995
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + + K +HK + SF G S ++ ++KR+ F +P+ IQ P +
Sbjct: 121 NEYFSTNNLEKTKHK---------KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 171
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP++++L+ S S R VIL+P+ ELA Q
Sbjct: 172 LQSRDIVGMARTGSGKTAAFILPMVEKLK-------SHSGKIGARAVILSPSRELAMQTF 224
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + ++ G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 225 NVFKDFAR-GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVE 283
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
+ DE D LF + F+ L L++S P T Q L +ATLP + + + + +V
Sbjct: 284 YVVFDEADRLF-EMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRL 342
Query: 483 PGMHRISPGLEE-FLVDCSGDQESD 506
++S LE FL + D+E++
Sbjct: 343 DAETKVSENLEMLFLSSKNADREAN 367
>gi|392545351|ref|ZP_10292488.1| ATP-dependent RNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 432
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 9/214 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK D ++++L NF + IQ A P V G + Q+G+GKT A+ LPVI
Sbjct: 2 NFKSFSFPDALLQALDELNFHTLTPIQQAAIPVVRRGHDVLATAQTGTGKTAAFALPVIH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L + S R +ILAPT ELA Q+ +NC++ + P V GG +
Sbjct: 62 RL-------LEGESLDSARALILAPTRELAEQIANNCQAFCQY-TPLTVQAVYGGVNIEG 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVD+L+ATPGR + LI+ G + L ++ +LDE D + D F +Q +I
Sbjct: 114 QTQRLSQGVDILVATPGRLLDLIRLGAVSLAQVKYLVLDEADRML-DMGFVTDMQKVIDM 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
Q L +AT P + +V + K+V
Sbjct: 173 VSEERQLLLFSATFPTAVKQFAKQVLREPKLVQA 206
>gi|300772766|ref|ZP_07082636.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
gi|300761069|gb|EFK57895.1| ATP-dependent RNA helicase RhlE [Sphingobacterium spiritivorum ATCC
33861]
Length = 435
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 137/279 (49%), Gaps = 26/279 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F+ FK+L ++++L + P+ IQ A P + + K + Q+G+GKT A+ +
Sbjct: 15 FNNLQFKDLKLIAPILKALDASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAI 74
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++Q L + K+ R ++L PT ELA Q+ N + SK +P R++V+ GG
Sbjct: 75 PILQMLTYSK----EKTAQKRIRTLVLTPTRELAIQIKENFDAYSK-ELPIRNLVIYGGV 129
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q+ Q + L++G+D+LIATPGR + L +G + L L +LDE D + D F ++
Sbjct: 130 GQQPQRDALRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRML-DMGFIHDVKK 188
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+IS P Q L +AT+P EI + D P ++P
Sbjct: 189 VISIIPKKRQTLLFSATMPAEIQKLASHILED------PSKVEVTP----------ESTT 232
Query: 505 SDKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
++K ++ + +K+ L L++ + T+VF K
Sbjct: 233 AEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVFSRTK 271
>gi|160380606|sp|A6ZXU0.1|DBP10_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
box protein 10
gi|151941964|gb|EDN60320.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
gi|190405046|gb|EDV08313.1| hypothetical protein SCRG_00534 [Saccharomyces cerevisiae RM11-1a]
gi|256269702|gb|EEU04973.1| Dbp10p [Saccharomyces cerevisiae JAY291]
Length = 995
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + + K +HK + SF G S ++ ++KR+ F +P+ IQ P +
Sbjct: 121 NEYFSTNNLEKTKHK---------KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 171
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP++++L+ S S R VIL+P+ ELA Q
Sbjct: 172 LQSRDIVGMARTGSGKTAAFILPMVEKLK-------SHSGKIGARAVILSPSRELAMQTF 224
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + ++ G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 225 NVFKDFAR-GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVE 283
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
+ DE D LF + F+ L L++S P T Q L +ATLP + + + + +V
Sbjct: 284 YVVFDEADRLF-EMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRL 342
Query: 483 PGMHRISPGLEE-FLVDCSGDQESD 506
++S LE FL + D+E++
Sbjct: 343 DAETKVSENLEMLFLSSKNADREAN 367
>gi|83858471|ref|ZP_00951993.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83853294|gb|EAP91146.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 480
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 142/274 (51%), Gaps = 23/274 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG S ++ ++ + +P+ IQ A P + G+ + Q+G+GKT ++ LP+I+
Sbjct: 2 TFEDLGLSPALLSAIADAGYEKPTPIQEGAIPVALTGRDVLGIAQTGTGKTASFTLPMIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + ++ + PR ++LAPT ELA+QV N + +K ++ GG +
Sbjct: 62 RLSR------GRARARMPRSLVLAPTRELAAQVADNVKLYAKNH-KLNMALLIGGVSFEP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +G D+LIATPGR + + G L L + ++DE D + D F ++ ++
Sbjct: 115 QKKILDQGADILIATPGRLLDHFERGGLLLTGVEILVIDEADRML-DMGFIPDIERILKL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q LF +AT+P EI + LV+ F P+ V P + + + +F++ S +Q
Sbjct: 174 LPPRRQTLFFSATMPGEIKH-LVDTFLRDPERVEVTRPA--QTADTITQFILRVSDNQAR 230
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ AL I + V I+FCN+K
Sbjct: 231 ---------TKREALRAAINRDGVKNGIIFCNRK 255
>gi|163751726|ref|ZP_02158944.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
gi|161328378|gb|EDP99537.1| ATP-dependent RNA helicase [Shewanella benthica KT99]
Length = 453
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 138/277 (49%), Gaps = 25/277 (9%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++ SF LG SD ++ SL + P+ IQA A P ++GK+ I A Q+GSGKT ++LP
Sbjct: 4 AKMSFSNLGLSDPILTSLAELGYSSPTPIQAEAIPLALKGKNLIAAAQTGSGKTATFVLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGG 383
+++ L + E Q + R +IL PT ELA QV C S+ G + +++ V GG
Sbjct: 64 MLEMLARGETQRKKRV-----RALILTPTRELAVQV---CNSIEAYGKYLNLKALAVYGG 115
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q + L EG+D+++ATPGR L + + + +LDE D + D F +
Sbjct: 116 VDYEPQKQALIEGIDIVVATPGRLRDLYTQRSIHFDEIEMLVLDEADRML-DMGFIEDIT 174
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+I + PV Q L +ATL ++ E P+ + P ++++LV D
Sbjct: 175 KIIDTLPVDRQNLLFSATLSRQVRELAKETIPNAIQLSVTKKSEGKPNIDQWLVTVDKD- 233
Query: 504 ESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
KKSALL LI+++ + ++F K
Sbjct: 234 ------------KKSALLSHLIKENRWQQALIFIETK 258
>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 429
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D +++++K Q + PS IQA A P ++EGK + A Q+G+GKT + LP++
Sbjct: 2 SFDLLGLPDSLLKAVKEQGYTEPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPLLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ R ++L PT ELA+QV ++ + K +P RS VV GG +
Sbjct: 62 LLEKG-----NRPKPNQVRALVLTPTRELAAQVHASVATYGK-NMPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVL+ATPGR + L + + L ILDE D + D F ++ +++
Sbjct: 116 QMQILRQGVDVLVATPGRLIDLYNQNAVSFKQLEVLILDEADRML-DMGFIHDIKRILAV 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPKQRQNLLFSATFSPDI 192
>gi|381169049|ref|ZP_09878224.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380681838|emb|CCG43046.1| Putative ATP-dependent RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 536
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 138/271 (50%), Gaps = 20/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++LG ++++L + P+ IQA A P V+ G+ + Q+G+GKT ++ LP+I
Sbjct: 2 TFEDLGLGPELLKALAEVGYTSPTPIQAQAIPVVLMGRDVLGCAQTGTGKTASFTLPMI- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E+ ++ + PR +ILAPT ELA+Q N + K +++++ GG
Sbjct: 61 -----EILAAGRAKARMPRSLILAPTRELAAQAAENFDNYGKYHRLTKALII-GGESMSD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L GVDVLIATPGR + + + G + L +++ ++DE D + D F ++ ++
Sbjct: 115 QSALLDRGVDVLIATPGRLLDMFERGRILLNDVKVLVIDEADRML-DMGFIPDVERIVGL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATL EI +L + F +M P +SPG + +Q
Sbjct: 174 LPKIRQTLFFSATLGPEI-RRLADAF-----LMNPKEITVSPGTS---TAATVEQHLAVV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E ++K+ L LI V +FCN+K
Sbjct: 225 EE---IDKRETLRHLIRTENVKNAFIFCNRK 252
>gi|379731981|ref|YP_005324177.1| ATP-dependent RNA helicase RhlE [Saprospira grandis str. Lewin]
gi|378577592|gb|AFC26593.1| ATP-dependent RNA helicase RhlE [Saprospira grandis str. Lewin]
Length = 414
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 115/202 (56%), Gaps = 11/202 (5%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
FSR F+++ + E L F RP+ IQ A P+++G+ + Q+G+GKT A+ +
Sbjct: 3 FSRYPFEQI-----LKERLAALEFKRPTDIQYKAIEPILKGQDVLAVAQTGTGKTAAFAI 57
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+ Q+L L G +S SP+VV++ PT ELA Q+ S +L++ G ++ + GG
Sbjct: 58 PLAQQL----LAGKDQSKGRSPKVVVMVPTHELAQQIESFIHNLTR-GSWIETLAIYGGS 112
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+Q QL L+ GVD+L+ATPGR L +G L+L ++ +LDE D + +E +Q
Sbjct: 113 KQDKQLAKLETGVDILVATPGRLFDLQAQGALRLQAVKTLVLDEADRMLQFGFYE-DIQD 171
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
L+ P Q LF +AT+ +I
Sbjct: 172 LLQRLPQKRQTLFFSATIDQKI 193
>gi|409399588|ref|ZP_11249862.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131306|gb|EKN01017.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 549
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 136/273 (49%), Gaps = 26/273 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++ +L + ++ + IQA A P V+ G+ + Q+G+GKT + LP++
Sbjct: 36 FASLGLSEPILNALAEKGYVHATPIQAQAIPVVLMGRDVLGVAQTGTGKTAGFTLPML-- 93
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E+ S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 94 ----EILAGSRARARMPRSLILEPTRELALQVAENFVQYGK-NLKLNHALLIGGESMADQ 148
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L +GVDVLIATPGR + L + G L L ++R ++DE D + D F ++ +++
Sbjct: 149 KAVLTKGVDVLIATPGRLIDLFERGGLLLRDVRVLVIDEADRML-DMGFIPDIERIVAML 207
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI +L + F + P +E V + T
Sbjct: 208 PTTRQTLFFSATMAPEI-RRLADAF-----LSNP---------KEITVSRQASVATTITT 252
Query: 510 ETAF---LNKKSALLQLIEKSPVSKTIVFCNKK 539
A ++K+ AL +L+ V IVFCN+K
Sbjct: 253 GLALVSEIDKREALRRLLRAEDVQNAIVFCNRK 285
>gi|119775819|ref|YP_928559.1| DEAD/DEAH box helicase [Shewanella amazonensis SB2B]
gi|119768319|gb|ABM00890.1| ATP-dependent RNA helicase, DEAD box family [Shewanella amazonensis
SB2B]
Length = 533
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 21/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++++L + + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + G + R +IL PT ELA+Q+ N + SK +P +S VV GG
Sbjct: 62 LLSQTQKAGPKQV-----RALILTPTRELAAQIADNITAYSKY-LPLKSTVVFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G+D+L+ATPGR + L ++ + L +LDE D + D F ++ ++
Sbjct: 116 QITTLRRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRML-DMGFIHDIKRILKL 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + + V + + +++++V DK
Sbjct: 175 LPAKRQNLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPV------DK- 227
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
N+K ALL +L + +VFC K
Sbjct: 228 ------NQKPALLAELTRFYRWQQVLVFCRTK 253
>gi|187921780|ref|YP_001890812.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187720218|gb|ACD21441.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 479
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +Q A P V+ G + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQTPTPVQVKAIPAVLSGNDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + +S RV++L PT ELA QVL + + K G+ R + GG
Sbjct: 62 RLVQHG----PEVSSNRARVLVLVPTRELAEQVLQSFVAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D FE L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFERELNAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPAQRQTLLFSATFTDDI 193
>gi|16126090|ref|NP_420654.1| DEAD/DEAH box helicase [Caulobacter crescentus CB15]
gi|221234860|ref|YP_002517296.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
gi|13423288|gb|AAK23822.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Caulobacter
crescentus CB15]
gi|220964032|gb|ACL95388.1| ATP-dependent RNA helicase [Caulobacter crescentus NA1000]
Length = 517
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 17/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++ + + IQA A P + G+ + Q+G+GKT A+ LP+I R
Sbjct: 4 FTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ ++ + PR +++APT ELA QV ++ +K G ++ GG Q
Sbjct: 64 LQS------GRAKARMPRALVIAPTRELADQVAASFEKYAK-GTKLSWALLIGGVSFGDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + G L + ++ ++DE D + D F ++ + +
Sbjct: 117 EKKLDRGVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRML-DMGFIPDIERIFKMT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P EI + D + + + + LV K P
Sbjct: 176 PPKKQTLFFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLV---------KVP 226
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ K+ AL LIEK+ + IVFCN+K+
Sbjct: 227 SSDPKAKRLALRALIEKAGIETGIVFCNRKT 257
>gi|410943162|ref|ZP_11374903.1| ATP-dependent RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 841
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 20/270 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S+ ++++++ + P+ IQA A P V++G + Q+G+GKT ++ LP++
Sbjct: 336 FADLGLSEPIMQAIQELGYEHPTPIQAQAIPEVLKGHDVLGVAQTGTGKTASFTLPML-- 393
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E+L G S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 394 ---EKLSG-SRARARMPRSLILEPTRELALQVADNFKLYGKH-LRLTHALLIGGESMAEQ 448
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + L G L L ++DE D + D F ++ ++
Sbjct: 449 RDVLNRGVDVLIATPGRLLDLFSRGGLLLTQTSTLVIDEADRML-DMGFIPDIEKIVGLL 507
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+ EI E + + ++ +EE L+ D+
Sbjct: 508 PRNRQTLFFSATMAPEIRRLADEFLRNPVEITVSRPSSVATTIEEGLIIVDEDE------ 561
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ AL +L+ V IVFCN+K
Sbjct: 562 ------KRRALRKLLRSQDVQSAIVFCNRK 585
>gi|395804393|ref|ZP_10483633.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
gi|395433492|gb|EJF99445.1| DEAD/DEAH box helicase [Flavobacterium sp. F52]
Length = 415
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 140/270 (51%), Gaps = 17/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L S + +++ + +L P+ IQ + P V+ G+ I Q+G+GKT A+ +P+I +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPVVLSGRDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G SK + R +++ PT ELA Q+ + + K + + GG Q Q
Sbjct: 63 LHR--IVGSSKK-AKQIRALVVTPTRELAVQIGESFDTYGKY-TNLTQLTIFGGVSQNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L++GVD+LIATPGR + L K+G L L +L +LDE D + D F ++ ++ +
Sbjct: 119 VETLKKGVDILIATPGRLLDLHKQGFLDLNHLHTLVLDEADQML-DMGFINDVKKIVKLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P+ I +L E+F + P +SP V + + +
Sbjct: 178 PKNRQTLLFSATMPIAI-RELAEMF-----LQDPAKVEVSP------VSSTAENVEQRVY 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K++ L LI++ +S +VF K
Sbjct: 226 FVDKTEKRNLLYSLIKEENLSNVLVFSRTK 255
>gi|375011758|ref|YP_004988746.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347682|gb|AEV32101.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 422
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 146/272 (53%), Gaps = 21/272 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L + +I++LK +N+ +P+ IQA + P +++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FEDLNIIEPIIKALKEENYEQPTPIQAKSIPLLLDRNDMLASAQTGTGKTAAFAIPILQH 62
Query: 330 LRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + K ++ RV +IL PT ELA Q+ + + K R+ V+ GG Q+
Sbjct: 63 LFNDR-----KESNHQHRVNALILTPTRELAIQIGESFTTYGKH-TGLRNTVIFGGVNQR 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q++ L++G+DVL+ATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 117 SQVDALRKGMDVLVATPGRLLDLMDQGYVNLKDIKYFVLDEADRML-DMGFIHDIRKVIA 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P I ++ + K V + + ++++L + D
Sbjct: 176 KLPAKRQSLFFSATMPKNIVELSRKILTNPKKVEVSPVSSTAETIQQYLYYTNKDL---- 231
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK L +++ + + ++F K
Sbjct: 232 --------KKDLLFHILKDQSMDQVLIFAKTK 255
>gi|329891295|ref|ZP_08269638.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
gi|328846596|gb|EGF96160.1| putative ATP-dependent RNA helicase rhlE [Brevundimonas diminuta
ATCC 11568]
Length = 589
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 7/220 (3%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S +F+ +G + ++ +L + +P+ IQA A P V++GK + Q+G+GKT A+ L
Sbjct: 1 MSEITFESMGLNKALLTALAATGYEKPTPIQAKAIPDVMKGKDLLGIAQTGTGKTAAFAL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++ RL + + ++T R +IL+PT ELA+Q+ + + + FR V+ GG
Sbjct: 61 PILHRLAENRVAPRPRTT----RALILSPTRELATQIGDSFKQYG-AHLGFRVAVIFGGV 115
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q LQ+G+DVL+A PGR + I++ L L +LDE D + D F ++
Sbjct: 116 KYGAQERALQQGLDVLVAAPGRLLDHIQQKTLDLSTCEIFVLDEADQML-DLGFIKPIRQ 174
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP 483
++S P Q LF +AT+P EI E+ D KV + P
Sbjct: 175 IVSRIPAKRQNLFFSATMPSEIGKLAGELLKDPVKVQVTP 214
>gi|162451805|ref|YP_001614172.1| hypothetical protein sce3532 [Sorangium cellulosum So ce56]
gi|161162387|emb|CAN93692.1| deaD2 [Sorangium cellulosum So ce56]
Length = 478
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++ +++ + + P+ IQ A PP++EG + Q+G+GKT A+ LP++QR
Sbjct: 3 FADLKLIEPLLRAIEAEGYSAPTPIQQQAIPPILEGNDLLGCAQTGTGKTAAFALPILQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q G RV++L PT ELA+QV + + K + R+ VV GG Q+ Q
Sbjct: 63 LAQS-----GGPRQGGLRVLVLTPTRELAAQVAESFTTYGK-NLGLRTAVVFGGVGQRPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ GVDVL+ATPGR + L +GI L +LDE D + D F ++ +++
Sbjct: 117 MEALRRGVDVLVATPGRLLDLCSQGIAPFGRLDTLVLDEADRML-DMGFIHDIRRVLAML 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT+P +I
Sbjct: 176 PERRQTLLFSATMPPDI 192
>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
Length = 432
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 23/272 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I++L++Q P+ IQ A P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + + + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELVKQISDEAKEIGSI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F +++LIS
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIENLIS 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++ +
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNTEEKTQR 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
L+++IE+ IVFCNK+
Sbjct: 231 ------------LIKMIEEDNPFLAIVFCNKR 250
>gi|346317243|ref|ZP_08858729.1| hypothetical protein HMPREF9022_04386 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345900333|gb|EGX70155.1| hypothetical protein HMPREF9022_04386 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 437
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 114/197 (57%), Gaps = 10/197 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L ++ +++++K Q ++ P+ IQ A P ++G+ + Q+G+GKT A+ +P IQ
Sbjct: 3 FQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ Q + R +I+ PT ELA Q+ N + ++ RS V+ GG QK Q
Sbjct: 63 LKKHYKQSI--------RSLIVTPTRELAIQIQENITAYAQYTT-IRSAVIFGGVPQKPQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ GVD+L+ATPGR LI++GI+ + ++ ILDE D + D F ++ +I+
Sbjct: 114 ERILKAGVDILVATPGRLNDLIQQGIIDISHIEIFILDEADRML-DMGFLPDVKRIIAKL 172
Query: 450 PVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 173 PKRKQTLFFSATMPSEI 189
>gi|383458360|ref|YP_005372349.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380732541|gb|AFE08543.1| DEAD-box ATP dependent DNA helicase [Corallococcus coralloides DSM
2259]
Length = 805
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 25/295 (8%)
Query: 247 EPT-DCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG 305
EPT P + ++ + SF E+ S+ + +L + + P+ +QA AF P + G
Sbjct: 6 EPTPGAPAPDEASTRPAEYIADVSFDEMNLSEPLRRALAERGYTSPTPVQAKAFGPAMAG 65
Query: 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365
K I+ ++G+GKT A+ LP+++++ +E + R +IL PT ELA QV
Sbjct: 66 KDLIVRSKTGTGKTAAFGLPLLEKIPADEKR---------VRALILCPTRELALQVAEEL 116
Query: 366 RSLSKC-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424
+L+K GV + + GG K Q + L+EG +++ TPGR I G L+L A
Sbjct: 117 TTLAKYKGV--KVAAIYGGASMKQQEDALEEGTPIIVGTPGRVFDHINRGNLKLDGCDHA 174
Query: 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
+LDE D + N + F + ++ P T Q L +AT+P +I N + + + ++ G
Sbjct: 175 VLDEADEMLN-QGFYEEVTRILDRLPKTRQVLLFSATVPTDIQNLIARYTTNAETLLLSG 233
Query: 485 MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ D SD+ P K L+ ++EK S I+FCN +
Sbjct: 234 DVFTVEHIHHIRYDV-----SDQFP------KPRNLIYILEKEEPSNAIIFCNTR 277
>gi|159463464|ref|XP_001689962.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283950|gb|EDP09700.1| predicted protein [Chlamydomonas reinhardtii]
Length = 567
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+++H S GD ++F+ +G +++ ++R F P+ IQA A+P + G+ +
Sbjct: 108 RRQHDISVQGDHVPEPLQTFESVGFPPDILDEIRRAGFKSPTPIQAQAWPIALSGRDLVA 167
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKT +LLP + +Q K P +++LAPT ELA Q+ + +
Sbjct: 168 IAKTGSGKTCGFLLPGML-----HIQATRKDARVGPTLLVLAPTRELAVQIKTEADKFGR 222
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
R+ V GG + QL +LQ GV ++IATPGR ++ G ++L + +LDE D
Sbjct: 223 SS-GIRNTCVYGGAPKGPQLRDLQYGVQIVIATPGRLNDFLEAGQVRLQQVSYLVLDEAD 281
Query: 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP 490
+ D FE +Q ++ + P Q LF +AT P E+ + + V+ +H
Sbjct: 282 RML-DMGFEPQIQRIVRTLPRQRQTLFFSATWPREVKHIA------SQFVVNQTVHVFIG 334
Query: 491 GLEEFLVDCSGDQESDKTPETAFLN----KKSALLQLIE-KSPVSKTIVFCNKK 539
G+EE LV T + +N K + L ++I K P ++ I+FC K
Sbjct: 335 GVEEKLV-----ANKSITQYVSVVNGMHEKFAELAKIIRAKPPGTRIIIFCTTK 383
>gi|359407402|ref|ZP_09199879.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677441|gb|EHI49785.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 471
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 144/281 (51%), Gaps = 26/281 (9%)
Query: 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321
G F SF +LG S+ ++ ++ + +P+ IQ+ + P V+ G+ + + Q+G+GKT +
Sbjct: 19 GFFAISSSFIDLGLSNELVNAVTLLGYEQPTPIQSASIPSVLMGRDILGSAQTGTGKTAS 78
Query: 322 YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR-SM-V 379
+ LP+I ++ ++ + PR +ILAPT ELA+QV S K V + SM +
Sbjct: 79 FTLPMI------DILAAGRAKARMPRSLILAPTRELAAQV---AESFEKFSVNHKMSMAL 129
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
+ GG Q L +GVDVLIATPGR + + G + L +++ ++DE D + D F
Sbjct: 130 LIGGVSFSDQDAALSKGVDVLIATPGRLLDHFERGKVLLQDVKILVIDEADRML-DMGFI 188
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVD 498
++ ++S PV Q LF +ATL EI+ K VM P + ++ P
Sbjct: 189 PDVERIVSYLPVMRQTLFFSATLSEEIHT------IGRKFVMNPKLIEVAKPA------- 235
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ D + T K+ AL +L+ + ++FCN+K
Sbjct: 236 TTADTITQHLLRTTGKQKRGALRELLRAEEIQNAVIFCNRK 276
>gi|312130956|ref|YP_003998296.1| dead/deah box helicase domain-containing protein [Leadbetterella
byssophila DSM 17132]
gi|311907502|gb|ADQ17943.1| DEAD/DEAH box helicase domain protein [Leadbetterella byssophila
DSM 17132]
Length = 428
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 21/273 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+FK+L + +I +++ + P++IQ A P + G + Q+G+GKT AYLLPV+
Sbjct: 3 KTFKDLDLNKQLIMAVEELGYTEPTEIQEKAIPIIQAGHDVLGIAQTGTGKTAAYLLPVL 62
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+++ + Q + R ++LAPT EL Q+ L+K R + + GG K
Sbjct: 63 MKVKYAQGQNM--------RALVLAPTRELVMQIHEAAVGLAKY-TDLRMVALYGGLGPK 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ+ENL++GVD++IATPGRFM L + G + + +L+ ILDE D + D F ++ ++
Sbjct: 114 TQMENLKKGVDIIIATPGRFMDLYRMGEIPVKSLQYLILDEADKMM-DMGFMPQIRQILE 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P + L +AT + +L E F + P ++P + +Q +
Sbjct: 173 VIPRKRKNLLFSATFQPRV-ERLSEEFLEA-----PYKIEVTPSAT---AASTVEQHIYR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
P F K + L L E + + + I+FC K+
Sbjct: 224 LPN--FKTKINLLGYLFENTEIPRAIIFCRTKA 254
>gi|296447148|ref|ZP_06889079.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
gi|296255313|gb|EFH02409.1| DEAD/DEAH box helicase domain protein [Methylosinus trichosporium
OB3b]
Length = 447
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 6/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG ++ ++ +L ++ ++ P+ IQA A P ++EG+ + Q+G+GKT A+ LP++ R
Sbjct: 4 FADLGLAEVILRALAQEGYVAPTPIQAQAIPSLLEGRDLLGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + + R ++LAPT ELA+Q+ + RS + V+ GG Q
Sbjct: 64 LLDER----RRPAPQTARALVLAPTRELAAQIADSFRSYGRFAR-MSVGVIVGGVGHGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GVDVL+ATPGR + I G L+L R +LDE D + D F ++ ++S
Sbjct: 119 IKMLASGVDVLVATPGRLLDHIASGALRLDTTRTIVLDEADHML-DLGFLAPIRKIVSRL 177
Query: 450 PVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 178 PKQRQSLFFSATMPKEI 194
>gi|229523508|ref|ZP_04412913.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
gi|229337089|gb|EEO02106.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
Length = 396
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 9/194 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+LR QG K R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLR----QGQRKK---RIRALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 114 QKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 172
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 173 LPSEVQFLLFSATL 186
>gi|320536466|ref|ZP_08036500.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
gi|320146675|gb|EFW38257.1| DEAD/DEAH box helicase [Treponema phagedenis F0421]
Length = 618
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 139/272 (51%), Gaps = 24/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILAD-QSGSGKTLAYLLPVI 327
SFK++G D ++++++ + F P+ IQ +A P ++ G++ I+A ++G+GKT A+ LP+I
Sbjct: 4 SFKDIGLEDIVLQAIEAKGFETPTPIQILAIPRLLSGETNIIAKARTGTGKTGAFGLPLI 63
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
Q LR + G PR ++L PT ELA QV + S P R VV GG
Sbjct: 64 QELR---------ADLGHPRALVLVPTRELAMQVAAEIESFRIETYP-RIAVVYGGSSMS 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L++G ++++ TPGR + I+ G L L + ILDE D + N F ++++ S
Sbjct: 114 EQLRALKKGAEIIVGTPGRIIDHIERGSLDLTQIEYFILDEADEMLN-MGFISDIETIFS 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ A+ L +AT+P I + + D ++V E+F +E DK
Sbjct: 173 KANSNARILMFSATMPKPILSIASDFMGDYEIVAEELSEEPVSLTEQFYWFV---REEDK 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
AL++LI+ +P +VFC K
Sbjct: 230 I---------EALIRLIDITPDFYGLVFCQTK 252
>gi|365766492|gb|EHN07988.1| Dbp10p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 899
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + + K +HK + SF G S ++ ++KR+ F +P+ IQ P +
Sbjct: 25 NEYFSTNNLEKTKHK---------KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 75
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP++++L+ S S R VIL+P+ ELA Q
Sbjct: 76 LQSRDIVGMARTGSGKTAAFILPMVEKLK-------SHSGKIGARAVILSPSRELAMQTF 128
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + ++ G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 129 NVFKDFAR-GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVE 187
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
+ DE D LF + F+ L L++S P T Q L +ATLP + + + + +V
Sbjct: 188 YVVFDEADRLF-EMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRL 246
Query: 483 PGMHRISPGLEE-FLVDCSGDQESD 506
++S LE FL + D+E++
Sbjct: 247 DAETKVSENLEMLFLSSKNADREAN 271
>gi|423201820|ref|ZP_17188399.1| hypothetical protein HMPREF1167_01982 [Aeromonas veronii AER39]
gi|404615767|gb|EKB12726.1| hypothetical protein HMPREF1167_01982 [Aeromonas veronii AER39]
Length = 467
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ GVD+L+ATPGR + L+ +G L L L +LDE D + D F V ++ ++ +
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQLEVLVLDEADRML-DMGFIVDIRRIMKA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I ++ D P + + P + + +Q + +
Sbjct: 175 LPAERQTLLFSATFSNDIKALADDLLND------PTLIEVDPS------NTAAEQVTQRI 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 223 IQVDRERRRELLSHMIGRGNWQRVLVFVRTK 253
>gi|313900312|ref|ZP_07833806.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
gi|312954861|gb|EFR36535.1| ATP-dependent RNA helicase RhlE [Clostridium sp. HGF2]
Length = 437
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 114/197 (57%), Gaps = 10/197 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L ++ +++++K Q ++ P+ IQ A P ++G+ + Q+G+GKT A+ +P IQ
Sbjct: 3 FQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ Q + R +I+ PT ELA Q+ N + ++ RS V+ GG QK Q
Sbjct: 63 LKKHYKQSI--------RSLIVTPTRELAIQIQENITAYAQYTT-IRSAVIFGGVPQKPQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ GVD+L+ATPGR LI++GI+ + ++ ILDE D + D F ++ +I+
Sbjct: 114 ERILKAGVDILVATPGRLNDLIQQGIIDISHIEIFILDEADRML-DMGFLPDVKRIIAKL 172
Query: 450 PVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 173 PKRKQTLFFSATMPSEI 189
>gi|449146212|ref|ZP_21777003.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus CAIM 602]
gi|449078150|gb|EMB49093.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus CAIM 602]
Length = 398
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 3 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K +S+ V GG ++ Q
Sbjct: 63 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQAQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDCL 175
Query: 450 PVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 176 PSEVQFLLFSATL 188
>gi|330829948|ref|YP_004392900.1| putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|423209349|ref|ZP_17195903.1| hypothetical protein HMPREF1169_01421 [Aeromonas veronii AER397]
gi|328805084|gb|AEB50283.1| Putative ATP-dependent RNA helicase RhlE [Aeromonas veronii B565]
gi|404617207|gb|EKB14143.1| hypothetical protein HMPREF1169_01421 [Aeromonas veronii AER397]
Length = 462
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ GVD+L+ATPGR + L+ +G L L L +LDE D + D F V ++ ++ +
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQLEVLVLDEADRML-DMGFIVDIRRIMKA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I ++ D P + + P + + +Q + +
Sbjct: 175 LPAERQTLLFSATFSNDIKALADDLLND------PTLIEVDPS------NTAAEQVTQRI 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 223 IQVDRERRRELLSHMIGRGNWQRVLVFVRTK 253
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 137/272 (50%), Gaps = 17/272 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G +++S+ + P+ IQA A P VVEG+ + A Q+G+GKT A+ LP++
Sbjct: 18 TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILH 77
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L S S + P R +IL PT ELA QV + + SK P RS VV GG
Sbjct: 78 RLM--PLANTSASPARHPVRALILTPTRELADQVYESVKRYSKQ-TPLRSAVVFGGVDIG 134
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q E L+ G +VL+ATPGR + +++ + L + +LDE D + D F L+ +I
Sbjct: 135 PQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML-DMGFLPDLERIIR 193
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT EI KL + + V + + + Q + K
Sbjct: 194 LLPAQRQGLLFSATFSNEI-RKLGRSYLNHPVEIEVAARNATAN--------TITQIAYK 244
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
P A K++A++ L++ +++ IVF N K
Sbjct: 245 MPSDA---KRAAVVHLVKSRGLNQVIVFSNTK 273
>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
Length = 483
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 145/276 (52%), Gaps = 26/276 (9%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K+F E G ++ ++ ++K + + P+ IQ P + EG+ + Q+G+GKT A++LP++
Sbjct: 2 KNFDEAGLAEPILRAVKEEGYEAPTPIQREVIPLMKEGEDILGIAQTGTGKTAAFVLPLL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL ++ K + R +ILAPT ELASQ+ + R+ + P + V+ GG +
Sbjct: 62 TRLAEDR----KKPAPHTCRALILAPTRELASQIAESVRTYGQFIGPSVA-VIFGGVKPG 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL L +G+D++IATPGR + G ++L +LDE D + D F A++ ++
Sbjct: 117 PQLRALSKGLDIVIATPGRLEDHMSTGGIKLDATTTVVLDEADQML-DLGFAPAIRRILG 175
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q + ++AT+P++I N E + ++ + P +S +E+ DQ
Sbjct: 176 KLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAP----VSRPIEKI------DQ--- 222
Query: 507 KTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKK 539
FLN K++ALL ++ + + + IVF K
Sbjct: 223 ---SVRFLNSSSKRAALLDILSEDDIERAIVFTRTK 255
>gi|385785555|ref|YP_005816664.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
Length = 442
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 128/271 (47%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E E DV++AT GR + IKE + ILDE D + D F ++++ +
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRML-DMGFAQDIETISAE 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+ Q L +ATL E E +++ P P E +D
Sbjct: 178 TRWRKQTLLFSATLEGEAIQDFAE-----RILNEPVEIEADPARRERKKIQQWYYRADDI 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K + LL L+++ V++ +VF K+
Sbjct: 233 K-----HKTALLLHLLKQPEVTRAVVFVRKR 258
>gi|148259867|ref|YP_001233994.1| DEAD/DEAH box helicase [Acidiphilium cryptum JF-5]
gi|146401548|gb|ABQ30075.1| DEAD/DEAH box helicase domain protein [Acidiphilium cryptum JF-5]
Length = 503
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 140/275 (50%), Gaps = 30/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++++L+ + +L P+ IQ A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 21 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPML-- 78
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ L G S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 79 ---DILSG-SRARARMPRSLILEPTRELALQVAENFVQYGKH-LKLNHALLIGGESMGEQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + + G L L ++R ++DE D + D F ++ ++S
Sbjct: 134 RDVLTRGVDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRML-DMGFIPDIERIVSLL 192
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGM--HRISPGLEEFLVDCSGDQE 504
P Q LF +AT+ EI +L + F P V P I+ GL LV
Sbjct: 193 PTMRQTLFFSATMAPEI-RRLADAFLSNPKQITVSRPATVATTITEGLS--LV------- 242
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
A +K+ AL +LI V +VFCN+K
Sbjct: 243 -------ATHDKREALRRLIRTEDVQNALVFCNRK 270
>gi|40891625|gb|AAR37337.1| vasa-like protein [Crassostrea gigas]
Length = 758
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 4/204 (1%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S K+F E G + +E++++ + +P+ +Q + P V+ G+ + Q+GSGKT A+LLP
Sbjct: 308 SIKNFDEAGLYEKFLENVRKAQYEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLP 367
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V+ + + + G S S P+ +++APT ELA Q+ + R + G R++V+ GG
Sbjct: 368 VLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAH-GTMLRAVVLYGGTS 426
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVAL 442
QL +++G +L+ TPGR + +I +G + L L+ ILDE D + + D +
Sbjct: 427 VGYQLRQVEQGTHILVGTPGRLIDIIGKGKISLSKLKYLILDEADRMLDMGFGPDIRKLV 486
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ L + Q L +AT P EI
Sbjct: 487 EELGTPPKTERQTLMFSATFPEEI 510
>gi|395491184|ref|ZP_10422763.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26617]
Length = 427
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 135/272 (49%), Gaps = 18/272 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L S ++++L + + P+ IQA + P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 4 TFPDLALSPLILKALAEEGYATPTPIQAQSIPLLLEGRDMLGMAQTGTGKTAAFALPLLH 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G R+++LAPT EL SQ+ + S + + + + GG Q
Sbjct: 64 RLAANP----RPAPKGGARILVLAPTRELVSQIAAGFESFGR-HLSLKVTTIFGGVSQFH 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L GVD+L+A PGR + L+ +G+ L L +LDE D + D F ++ L+++
Sbjct: 119 QVAALDAGVDILVAAPGRLLDLVDQGLCDLSALEALVLDEADQML-DMGFAKPIERLVAT 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P L +AT+P I + D P I+P + D+ +
Sbjct: 178 LPKDRHTLLFSATMPKAIAALAESLLTD------PASVEIAPP------STTVDRIAQSV 225
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
NKK+ALL+L+ + + +VF +K+
Sbjct: 226 MFLDAANKKTALLELLRTPEIGQAVVFTLQKN 257
>gi|340717724|ref|XP_003397328.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
terrestris]
Length = 713
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 137/276 (49%), Gaps = 22/276 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 107 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 166
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + + P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 167 VHINNQPRLNRGE----GPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 219
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 220 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 278
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 279 IEQIRPDRQVLMWSATWPKEV-QALAEDFLSDYIQINIGSLTLAANHNIRQIIEIC---Q 334
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E +K ET K S LL+ I K SK I+F K
Sbjct: 335 EHEK--ET----KLSGLLREIGKDRGSKMIIFVETK 364
>gi|452964578|gb|EME69615.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 480
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 115/197 (58%), Gaps = 6/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P ++EG+ + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTSPTPIQEQSIPHLIEGRDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + KS RV++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDTFKKRAMPKSC----RVLVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVDVL+ATPGR + LI +G ++L ++ +LDE D + D F ++ +++
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIDQGAIRLDSVEALVLDEADRML-DMGFIQPIRKIVAMV 178
Query: 450 PVTAQYLFVTATLPVEI 466
P Q + +AT+P I
Sbjct: 179 PKQRQTVLFSATMPDSI 195
>gi|395215483|ref|ZP_10400949.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394455827|gb|EJF10233.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 476
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL D ++++L+ + + +P+ IQ A P ++ G + Q+G+GKT A+ +PV+Q
Sbjct: 2 TFSELNLIDPILKALQAEGYTQPTPIQEQAIPHLLAGTDVLGCAQTGTGKTAAFAIPVLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQK 387
L ++ S + + +IL PT ELA Q+ + + K GV R V+ GG Q
Sbjct: 62 MLHNQK-----NRASNTIKTLILTPTRELAIQINESFAAYGKNTGV--RHTVIFGGVSQH 114
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ GVDVLIATPGR + LI +G + L ++ +LDE D + D F ++ +I
Sbjct: 115 AQVQTLKRGVDVLIATPGRLLDLIGQGFISLKHVEFFVLDEADRML-DMGFIHDVKRIIP 173
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +++ D +++ P ++P V + ++
Sbjct: 174 MLPKQRQSLFFSATMP-----PVIQDLADT-ILINPVKVEVTP------VSSTAEKVGQA 221
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ L L+ +S + + +VF K
Sbjct: 222 VYFVEKNDKRELLRHLLSESEIDRVLVFTRTK 253
>gi|94497443|ref|ZP_01304013.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
gi|94423074|gb|EAT08105.1| DEAD/DEAH box helicase-like protein [Sphingomonas sp. SKA58]
Length = 443
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 135/275 (49%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG SD ++ ++ + P+ IQA A P V+ K I Q+G+GKT +++LP+I
Sbjct: 2 TFADLGLSDELLRAVTESGYDTPTPIQAQAIPSVLMMKDIIGIAQTGTGKTASFVLPMID 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L PR +IL PT ELA+QV N K ++++ GG +
Sbjct: 62 ILAHGRARAL------MPRSLILEPTRELAAQVAENFEKYGKYHKLSMALLI-GGVQMGD 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVDVLIATPGR M L + G + L ++DE D + D F ++ + +
Sbjct: 115 QVKALEKGVDVLIATPGRLMDLFERGKILLNGCNMLVIDEADRML-DMGFIPDIEHICTK 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P Q L +AT+P + KL + F P V P S + + LV +
Sbjct: 174 LPAQRQTLLFSATMP-PVIKKLADRFLSNPKSIEVARPAT--ASTNIAQHLVKVDARK-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K+ AL L++ V ++FCN+K+
Sbjct: 229 ----------KREALRALLDGQQVQSAVIFCNRKT 253
>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 549
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S + +++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP++
Sbjct: 2 SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
E L +K+ G R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 61 ----ELLSKGNKAKVGQIRALVLTPTRELAAQVSESVETYGKY-LPLRSAVVFGGVPINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QIQKLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRML-DMGFIRDIKKILAM 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAKRQNLMFSATFSDEI 192
>gi|109898753|ref|YP_662008.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109701034|gb|ABG40954.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
T6c]
Length = 458
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 135/274 (49%), Gaps = 25/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG D +I ++ Q + + IQ A P V+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFEALGLRDELIHAIATQGYSVATDIQREAIPLVLAQHDLLAVAQTGTGKTAAFTLPLLQ 61
Query: 329 RLRQEE---LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
RL ++ +QG+ R +I+ PT ELA+QV + S + RS V GG R
Sbjct: 62 RLAAKQSTKVQGV--------RSLIVTPTRELAAQVAISVEIYS-TQLNIRSFAVYGGVR 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ LQEGVDVLIATPGR + L ++ L NL + DE D + D F ++ +
Sbjct: 113 IEPQIAQLQEGVDVLIATPGRLLDLYEQRALHFENLEILVFDEADRML-DLGFIDDVKRI 171
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
S PV Q L +AT +I + E+ K + E V+ + D +
Sbjct: 172 QSLLPVKRQTLLFSATFSKQIKHFAREMLNAPKTI------------EVSAVNSTVDLVA 219
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +AL+QLI++ S+T+VF K
Sbjct: 220 QTFHPIEQARKSAALIQLIQQHRWSQTLVFIRTK 253
>gi|409398007|ref|ZP_11248859.1| ATP-dependent RNA helicase [Pseudomonas sp. Chol1]
gi|409117513|gb|EKM93941.1| ATP-dependent RNA helicase [Pseudomonas sp. Chol1]
Length = 441
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQAEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L L +
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRML-DLGFADELDQLFCA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKRRQTLLFSATFSEAIRQMARELLRD 203
>gi|258627528|ref|ZP_05722305.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
gi|258580110|gb|EEW05082.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM603]
Length = 398
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 3 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K +S+ V GG ++ Q
Sbjct: 63 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQAQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 117 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDCL 175
Query: 450 PVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 176 PSEVQFLLFSATL 188
>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
gi|387870433|ref|YP_005801803.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
Length = 442
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 128/271 (47%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E E DV++AT GR + IKE + ILDE D + D F ++++ +
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRML-DMGFAQDIETISAE 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+ Q L +ATL E E +++ P P E +D
Sbjct: 178 TRWRKQTLLFSATLEGEAIKDFAE-----RILNEPVEIEADPARRERKKIQQWYYRADDI 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K + LL L+++ V++ +VF K+
Sbjct: 233 K-----HKTALLLHLLKQPEVTRAVVFVRKR 258
>gi|217976993|ref|YP_002361140.1| DEAD/DEAH box helicase [Methylocella silvestris BL2]
gi|217502369|gb|ACK49778.1| DEAD/DEAH box helicase domain protein [Methylocella silvestris BL2]
Length = 448
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 126/253 (49%), Gaps = 18/253 (7%)
Query: 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
+ +P+ IQA A P V+ G+ + Q+G+GKT A+ LP++ +L Q G
Sbjct: 21 GYTKPTPIQAQAIPHVLTGRDLVGIAQTGTGKTAAFALPILHQLAANPQQ----PPRGGA 76
Query: 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
RV++L+PT ELASQ+ + RSL + VV GG Q+ LQ G+DVL+ATPGR
Sbjct: 77 RVLVLSPTRELASQIAESFRSLG-SEMQLSVAVVFGGVPHGAQIRALQRGLDVLVATPGR 135
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466
+ + G+ L +LDEVD + D F A+ ++ + P Q LF +AT+P EI
Sbjct: 136 LVDHLDSGVAHLGKTEFFVLDEVDQML-DLGFVKAIHRIVKTLPQRRQNLFFSATMPTEI 194
Query: 467 YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK 526
++ + P ++P V + D+ + K+ L+ L+
Sbjct: 195 AKLAADLLKN------PAQVSVTP------VAKTADRVEQQVLFVETHRKRDILVDLLAD 242
Query: 527 SPVSKTIVFCNKK 539
+ +++TI+F K
Sbjct: 243 AKMARTIIFTRTK 255
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ ++ + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + + ++ + R ++L PT ELA+QV + + K +P RS V+ GG
Sbjct: 62 LLSRGK-----RAPAKQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVIFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L +G + L +LDE D + D F ++ ++
Sbjct: 116 QISKLGKGVDILVATPGRLLDLYNQGAVSFKQLEVLVLDEADRML-DMGFIHDIKKILKI 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I N + + + + + +E+++ Q
Sbjct: 175 LPAKRQNLMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQ----- 229
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +AL+ L++++ + +VF K
Sbjct: 230 -------KTAALIHLVKQNEWKQVLVFSRTK 253
>gi|431928590|ref|YP_007241624.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431826877|gb|AGA87994.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 441
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +Q A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L L S+
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRML-DLGFADELDQLFSA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKKRQTLLFSATFSEAIRQMARELLRD 203
>gi|326403205|ref|YP_004283286.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
gi|325050066|dbj|BAJ80404.1| ATP-dependent RNA helicase [Acidiphilium multivorum AIU301]
Length = 510
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 140/275 (50%), Gaps = 30/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++++L+ + +L P+ IQ A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 28 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPML-- 85
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ L G S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 86 ---DILSG-SRARARMPRSLILEPTRELALQVAENFVQYGKH-LKLNHALLIGGESMGEQ 140
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + + G L L ++R ++DE D + D F ++ ++S
Sbjct: 141 RDVLTRGVDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRML-DMGFIPDIERIVSLL 199
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGM--HRISPGLEEFLVDCSGDQE 504
P Q LF +AT+ EI +L + F P V P I+ GL LV
Sbjct: 200 PTMRQTLFFSATMAPEI-RRLADAFLSNPKQITVSRPATVATTITEGLS--LV------- 249
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
A +K+ AL +LI V +VFCN+K
Sbjct: 250 -------ATHDKREALRRLIRTEDVQNALVFCNRK 277
>gi|350418218|ref|XP_003491789.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 712
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 20/275 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 105 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 164
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + + P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 165 VHINNQPRLNRGE----GPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 217
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 218 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 276
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
I Q L +AT P E+ + D ++ +G + + + + C QE
Sbjct: 277 IEQIRPDRQVLMWSATWPKEVQALAEDFLSDYIQINIGSLTLAANHNIRQIIEIC---QE 333
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K ET K S LL+ I K SK I+F K
Sbjct: 334 HEK--ET----KLSGLLREIGKDRGSKMIIFVETK 362
>gi|395490699|ref|ZP_10422278.1| DEAD/DEAH box helicase [Sphingomonas sp. PAMC 26617]
Length = 485
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 30/281 (10%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
++ SF LG ++ ++ +L+ + + P+ IQA + P ++EG+ + Q+G+GKT A++L
Sbjct: 3 YTFMSFAHLGLAEPLVRALEAKGYTSPTPIQAQSIPMLLEGRDLLGIAQTGTGKTAAFVL 62
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT--- 381
P IQRL + + L R+++LAPT ELASQ+ + R +K F M V
Sbjct: 63 PSIQRLVAADKRVLPTHC----RMLVLAPTRELASQIADSARDYAK----FSKMTVATVF 114
Query: 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441
GG +++ GVD+L+ATPGR + LI++ ++ L L +LDE D + D F A
Sbjct: 115 GGTSINKNRQDMSRGVDILVATPGRLLDLIEQRMVSLAMLEILVLDEADQML-DLGFIHA 173
Query: 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
L+ ++ P Q LF +AT+P I + D V + + +E+++
Sbjct: 174 LRKIVKMLPRVRQTLFFSATMPNAIRELADQFLNDPATVKVAPVSSTAERVEQYVY---- 229
Query: 502 DQESDKTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKK 539
F+N K++ L L+ + + +VF K
Sbjct: 230 -----------FVNQGEKQALLTMLLADGAIERCLVFTRTK 259
>gi|395761621|ref|ZP_10442290.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 456
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 4/200 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ + P+ IQ+ A P V+ G + Q+G+GKT + LPV+
Sbjct: 2 SFSSLGLSDAIVRAVTEHGYTVPTPIQSQAIPAVLAGGDLLAGAQTGTGKTAGFTLPVLH 61
Query: 329 RLRQE-ELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
RL + ++ +TS P R +ILAPT ELA+QV + R+ SK S V+ GG
Sbjct: 62 RLSTDANGASITSTTSTRPIRALILAPTRELAAQVEESVRAYSKY-TKLNSTVIFGGVGI 120
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L+ GVD+L+ATPGR + + +G + L + ILDE D + D F ++ ++
Sbjct: 121 NPQIKQLKHGVDILVATPGRLLDHMGQGTVDLSKVEILILDEADRML-DMGFIRDIKKVL 179
Query: 447 SSSPVTAQYLFVTATLPVEI 466
+ P Q L +AT EI
Sbjct: 180 AVLPPKRQNLLFSATFSEEI 199
>gi|336124562|ref|YP_004566610.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335342285|gb|AEH33568.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 430
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 136/281 (48%), Gaps = 24/281 (8%)
Query: 263 DFFS---RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKT 319
DF + R F LG SD +++++ + P+ IQ A P ++ GK+ I A Q+G+GKT
Sbjct: 11 DFLTLRARMPFSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKT 70
Query: 320 LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
+++LP++Q L Q Q + R +ILAPT ELA QV N +K +P +
Sbjct: 71 ASFVLPILQMLSQGTTQRAKRV-----RALILAPTRELALQVEENVTQYAKY-LPLTCLA 124
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
+ GG + Q + L EGVD+LIATPGR + + + + L ++DE D + D F
Sbjct: 125 MYGGVDSQKQKQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRML-DMGFI 183
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDC 499
+ ++ P+ Q L +ATL + D + G +R +E++++
Sbjct: 184 EDINKIVDRLPLNRQNLLFSATLSRPVRELAKSAINDPIEIDVAGYNRTPNQIEQWIITV 243
Query: 500 SGDQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
DQ KSALL LI ++ + ++F K
Sbjct: 244 DKDQ-------------KSALLSHLITENQWQQAMIFIETK 271
>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
Length = 564
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 138/271 (50%), Gaps = 15/271 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q + S+ R ++L PT ELA+QV + R+ K + +S V+ GG
Sbjct: 62 RLAQGQAP-TSRFGGRGVRALVLTPTRELAAQVEESVRTYGKH-LDIKSTVIFGGVGMNP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E ++ GVDVL+ATPGR + L ++G + L + +LDE D + D F ++ +++
Sbjct: 120 QIERIKRGVDVLVATPGRLLDLQQQGFIDLSQVEILVLDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D + + +++P + + + S
Sbjct: 179 LPKAKQSLLFSATFSDEIRELAAGLLNDPQSI------QVTP------RNTTVQRISQVI 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK LL +I++ S+ +VF K
Sbjct: 227 HPVGRGKKKQVLLHIIQEHDWSQVLVFTRTK 257
>gi|305667396|ref|YP_003863683.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
gi|88709444|gb|EAR01677.1| DEAD/DEAH box helicase-like protein [Maribacter sp. HTCC2170]
Length = 432
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 140/273 (51%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG + ++++L ++ + P+ IQ A P +++GK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFKNLGIIEPILKALGQEGYSSPTPIQEQAVPILLKGKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ + S + +++ PT ELA Q+ + + K R+ V+ GG +Q
Sbjct: 62 QIHNDRQ---SNDRHRKIKALVVTPTRELAIQIGESFTAYGKF-TGIRNTVIFGGVKQGK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L+ GVD+LIATPGR + L+ +G + L ++ A+LDE D + D F ++ +I+
Sbjct: 118 QTQALKNGVDILIATPGRLLDLMNQGFISLRDIEYAVLDEADQML-DMGFIHDIRKIIAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE--FLVDCSGDQESD 506
P Q LF +AT+P +I + D + V + +E+ + V+ S
Sbjct: 177 LPPKRQSLFFSATMPKDIVALSRTILGDFERVTIKPEQATAEKVEQLVYFVNKS------ 230
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK L+ L+E P S +VF K
Sbjct: 231 --------NKVKLLVHLLENRPNSSVLVFSRTK 255
>gi|365539790|ref|ZP_09364965.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 465
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V+EGK + A Q+G+GKT + LP++
Sbjct: 2 SFASLGLSHAILKAVASQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILD 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++G K R +IL PT ELA+QV N + + +P RS V+ GG +
Sbjct: 62 LL----VKG-PKVGPNQVRALILTPTRELAAQVADNVATYGQ-NLPLRSEVIFGGVKVNP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ GVD+L+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QMMKMRRGVDILVATPGRLLDLYNQNAIKFNQLEILVLDEADRML-DMGFIRDIKKILAL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPAKRQNLLFSATFSDEI 192
>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 520
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 4/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ Q + P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ R +ILAPT ELA+QV + R K +P S + GG
Sbjct: 62 RLSAMPRQKINGHV--PIRALILAPTRELAAQVEESVRQYGKY-LPLTSACIFGGVGINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + +++G + L +++ +LDE D + D F ++ ++++
Sbjct: 119 QITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRML-DMGFIRDIRKVLAA 177
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 178 LPPKRQNLLFSATFADEI 195
>gi|220926974|ref|YP_002502276.1| DEAD/DEAH box helicase [Methylobacterium nodulans ORS 2060]
gi|219951581|gb|ACL61973.1| DEAD/DEAH box helicase domain protein [Methylobacterium nodulans
ORS 2060]
Length = 506
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 133/271 (49%), Gaps = 18/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G + ++++L ++ P+ IQA A PP + G+ Q+G+GKT A+ LP++ R
Sbjct: 4 FVDFGLAAPIMKALAETGYVTPTPIQAQAVPPAMTGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E ++ RV++L+PT ELASQ+ + R K +PF + VV GG Q
Sbjct: 64 LASETPA--KRAPRRGCRVLVLSPTRELASQIADSFRDYGKF-LPFSTTVVFGGVTIGRQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L G+DVL+ATPGR + L+ L L ++ +LDE D + D F AL+ +++
Sbjct: 121 ERALANGIDVLVATPGRLLDLVDRRSLSLDSVEYLVLDEADQML-DLGFIHALKRIVTLL 179
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P I + D +V + P V + ++ +
Sbjct: 180 PKARQSLFFSATMPKNIATLAAQYLRDPVQVAVTP-------------VATTAERVEQRV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K++ L ++ + + +VF K
Sbjct: 227 IHVSTGAKQALLGTILRDESIDRVLVFTRTK 257
>gi|383862185|ref|XP_003706564.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
[Megachile rotundata]
Length = 713
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 136/276 (49%), Gaps = 22/276 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 106 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 165
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + S P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 166 VHINNQP----RLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 218
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 219 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 277
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 278 IEQIRPDRQVLMWSATWPKEV-QALAEDFLSDYIQINIGSLTLAANHNIRQIIEIC---Q 333
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E +K ET K S LL+ I K K I+F K
Sbjct: 334 EHEK--ET----KLSGLLREIGKDRGGKMIIFVETK 363
>gi|340362171|ref|ZP_08684568.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
gi|339887772|gb|EGQ77294.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
Length = 457
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PTDRQTLLFSAT 190
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 140/273 (51%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ ++ + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 24 SFTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 83
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P RS VV GG
Sbjct: 84 LLTRG-----NRAQAKQVRALVLTPTRELAAQVAESVETYGK-NLPLRSAVVFGGVGIGP 137
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L + L L ILDE D + D F ++ ++
Sbjct: 138 QISKLGKGVDILVATPGRLLDLFNQRALNFNQLEVLILDEADRML-DMGFIHDIKKILKV 196
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT +I KL + V ++ + P + + +E+++ Q
Sbjct: 197 LPAKRQNLMFSATFSDDI-RKLAKGLVNNPVEISVTP-RNATAKTVEQYIYQVDQKQ--- 251
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +AL+ LI+++ + +VF K
Sbjct: 252 ---------KTAALIHLIKQNDWKQVLVFSRTK 275
>gi|423206363|ref|ZP_17192919.1| hypothetical protein HMPREF1168_02554 [Aeromonas veronii AMC34]
gi|404621915|gb|EKB18780.1| hypothetical protein HMPREF1168_02554 [Aeromonas veronii AMC34]
Length = 467
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ GVD+L+ATPGR + L+ +G L L L +LDE D + D F V ++ ++ +
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQLEVLVLDEADRML-DMGFIVDIRRIMKA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I ++ D P + + P + + +Q + +
Sbjct: 175 LPAERQTLLFSATFSNDIKALADDLLND------PTLIEVDPS------NTAAEQVTQRI 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 223 IQVDRERRRELLSHMIGRGNWQRVLVFVRTK 253
>gi|392307103|ref|ZP_10269637.1| ATP-dependent RNA helicase [Pseudoalteromonas citrea NCIMB 1889]
Length = 465
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++S+ + + P+ IQ P V+ G+ + A Q+G+GKT A+ LP+I+
Sbjct: 2 TFSDLGLSPSIVQSITDKGYTTPTAIQEKGIPAVLSGQDVMAAAQTGTGKTAAFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L +E+ + S ++LAPT ELA Q+ N + S+ G RS VV GG +
Sbjct: 62 QLLKED-----RPRSNQALALVLAPTRELALQIAENVEAYSQ-GTRLRSAVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+LIATPGR + L + ++ LR +LDE D + D F ++ +I
Sbjct: 116 QMIQLRKGVDILIATPGRLLDLYSQNAVKFNQLRTLVLDEADRML-DMGFIHDIKRIIKV 174
Query: 449 SPVTAQYLFVTATL--PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT P+ K + V P ++ + P + S + +F D
Sbjct: 175 LPKERQNLLFSATFSDPIRDLAKGLIVSP-IEISVTP-KNAASKTVTQFAYAV------D 226
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +T L+ LI + +VFC K
Sbjct: 227 KPQKTKLLS------HLIRTKKWQQVLVFCRTK 253
>gi|408675131|ref|YP_006874879.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856755|gb|AFK04852.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 435
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 140/274 (51%), Gaps = 24/274 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L + + +L + + P+ IQ A P V+ GK I Q+G+GKT A+ +P+IQ+
Sbjct: 3 FESLNLIEPIRLALAAEGYTTPTPIQQQAIPIVLAGKDLIGVAQTGTGKTAAFSIPIIQQ 62
Query: 330 LRQEELQGLSKSTSGSPRV--VILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFR 385
L Q+ + + G ++ +I+ PT ELA Q+ SL+ G + V+ GG +
Sbjct: 63 LYQK----VDTNRKGKRKIKALIVTPTRELAIQI---GESLAAYGANTDLKYSVIFGGVK 115
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q E LQ+GVD+L+ATPGR + LI +GI+ L ++ +LDE D + D F ++ L
Sbjct: 116 QGKQTEELQQGVDILVATPGRLLDLIGQGIINLSSIEIFVLDEADRML-DMGFVHDVKRL 174
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
I P Q LF +AT+P EI + + V + + +++FL
Sbjct: 175 IKLLPTKRQSLFFSATMPDEIVKLSATILNNPSSVSVTPVSSTADTIKQFLYHV------ 228
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK +K + LL++++ S + +VF K
Sbjct: 229 DKK------DKNALLLEILKDSNIETVLVFTRTK 256
>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
bacterium]
Length = 434
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 112/197 (56%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD +++++K+Q + +PS IQ + P V++GK + A Q+G+GKT + LP++Q
Sbjct: 3 FSKLGLSDSILKAVKQQGYDKPSPIQEKSIPIVLDGKDLMAAAQTGTGKTAGFTLPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + + S R +IL PT ELA+QV + + K +P +S VV GG + Q
Sbjct: 63 LSKGK-----PTNSNQVRTLILTPTRELAAQVQDSVATYGKH-LPLKSTVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVD+L+ATPGR + L + ++ L + DE D + D F ++ ++
Sbjct: 117 MKKLRGGVDILVATPGRLLDLYSQNAVKFDQLEIIVFDEADRML-DMGFIHDIKRILKVL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PPKRQTLMFSATFSDEI 192
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 146/280 (52%), Gaps = 40/280 (14%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ +G SD ++ L+ F +P++IQ+ A P ++EG+ + Q+G+GKT AY LP ++
Sbjct: 4 SFQTIGLSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLPFLE 63
Query: 329 R--LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT--GGF 384
+ L Q+ +QGL IL PT ELA QV +SL + V R V+T GG
Sbjct: 64 KIDLEQKTVQGL-----------ILTPTRELAVQV---TQSLKEFAVDRRLWVLTVCGGQ 109
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q+ +LQ+GV +++ TPGR + L++ G L LR A+LDE D + + F ++
Sbjct: 110 SMERQIRSLQKGVHIVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLS-MGFIDDVKK 168
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ SP T Q + +AT+P I + LVE F + + + +++P
Sbjct: 169 ILRQSPKTRQTVCFSATMPPAIRD-LVENFLNDPINITIKQPQVTP-------------- 213
Query: 505 SDKTPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
D+ + ++ +K ALL ++E + I+F K
Sbjct: 214 -DRIAQEVYMIPRGWSKTKALLPILEMANPESAIIFVRTK 252
>gi|227538144|ref|ZP_03968193.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241987|gb|EEI92002.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 435
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 26/279 (9%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F+ FK+L ++++L+ + P+ IQ A P + + K + Q+G+GKT A+ +
Sbjct: 15 FNNLQFKDLKLIAPILKALEASGYQNPTPIQEQAIPIIFQRKDLLACAQTGTGKTAAFAI 74
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++Q L + K+ R ++L PT ELA Q+ N + SK +P R++V+ GG
Sbjct: 75 PILQMLTYSK----EKTAQKRIRTLVLTPTRELAIQIKENFDAYSK-ELPIRNLVIYGGV 129
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q+ Q + L++G+D+LIATPGR + L +G + L L +LDE D + D F ++
Sbjct: 130 GQQPQRDALRKGIDILIATPGRLLDLYNQGFIDLKQLEYFVLDEADRML-DMGFIHDVKK 188
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+IS P Q L +AT+P EI KL ++ P ++P
Sbjct: 189 VISIIPKKRQTLLFSATMPAEI-QKLA-----SHILEEPSKVEVTP----------ESTT 232
Query: 505 SDKTPETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
++K ++ + +K+ L L++ + T+VF K
Sbjct: 233 AEKIQQSVYFVSKSDKRHLLTHLLKSENIEHTLVFSRTK 271
>gi|406676813|ref|ZP_11083998.1| hypothetical protein HMPREF1170_02206 [Aeromonas veronii AMC35]
gi|404625127|gb|EKB21944.1| hypothetical protein HMPREF1170_02206 [Aeromonas veronii AMC35]
Length = 462
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PF++++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFKTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ GVD+L+ATPGR + L+ +G L L L +LDE D + D F V ++ ++ +
Sbjct: 116 NLDAIKLGVDILVATPGRLLDLLTQGALTLSQLEVLVLDEADRML-DMGFIVDIRRIMKA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I ++ D P + + P + + +Q + +
Sbjct: 175 LPAERQTLLFSATFSNDIKALADDLLND------PTLIEVDPS------NTAAEQVTQRI 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 223 IQVDRERRRELLSHMIGRGNWQRVLVFVRTK 253
>gi|420241874|ref|ZP_14745969.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
gi|398069204|gb|EJL60573.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF080]
Length = 579
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 145/273 (53%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ +L + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 NFHELGLTKQLVATLFALGYETPTPIQAQAIPQLLEGRDMIGLAQTGTGKTAAFGLPLIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +E+ + +++T R +ILAPT EL +Q+ ++ + + P + V GG
Sbjct: 63 MLLKEQKRPDNRTT----RTLILAPTRELVNQIAASLKGYVRN-TPLKINAVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L +R +LDE D + D F L+ +
Sbjct: 118 QQMQLEKGTDILVATPGRLLDLISRRAIGLTTVRYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + + D +V V PG + + +E+F+ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLASDFLKDPVQVSVTPPG--KAADKVEQFVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS +E++P + +VF K
Sbjct: 233 KTD----LLKKS-----LEENPDGRAMVFLRTK 256
>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 434
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 130/267 (48%), Gaps = 24/267 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + +++SL F P+++Q A PP +EG+ I+ ++GSGKT A+L+P+I
Sbjct: 2 FDSMNIKKEIVDSLNAMGFKEPTEVQKQAIPPGLEGRDVIVKSKTGSGKTAAFLIPIINN 61
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ S P +++ PT ELA QV + + + R+ V GG Q
Sbjct: 62 LKK----------SHYPSAMVIVPTRELAMQVTDVAKQIGH-NIGIRTFTVYGGASINIQ 110
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E ++ GV++++ TPGR + LIK G L ++ +LDE DI+ D F ++ ++S
Sbjct: 111 IEAIRAGVNIIVGTPGRVIDLIKRGELPTDQIKFLVLDEFDIML-DMGFIDDVKYILSKI 169
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q +F +AT+P EI + + ++ I+ +E VD S
Sbjct: 170 PQEKQTMFFSATIPSEI-RAVTNKYTKNPII-------INIDSKEVTVDTIEHYYSIARV 221
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFC 536
FL LL I+ K+IVFC
Sbjct: 222 ADKFL----TLLAYIDTKKPKKSIVFC 244
>gi|322796814|gb|EFZ19232.1| hypothetical protein SINV_01003 [Solenopsis invicta]
Length = 1201
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 14/270 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 707 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 766
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + S + P +ILAPT ELA Q+ R+ + GG + Q
Sbjct: 767 INHQP----RLSRNDGPIALILAPTRELAQQIQQVASDFGMSS-QVRNTCIFGGAPKGPQ 821
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 822 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVEQI 880
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 881 RPDRQTLMWSATWPKEVRNLAEEFLTDYI--------QINIGSLQLAANHNILQIVDVCE 932
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E +K LL+ I P +KTI+F K
Sbjct: 933 EYEKESKLMKLLEEISNEPENKTIIFVETK 962
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 16/273 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E Y++E++ R+ +LRP+ IQA +P + G+ + Q+GSGKTL Y+LP I
Sbjct: 112 QYFEEGNFPPYVMENIHREGYLRPTPIQAQGWPIALSGRDLVAIAQTGSGKTLGYILPAI 171
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ + S+ P V+ILAPT ELA Q+ S + R+ + GG +
Sbjct: 172 VHI----IHQPRISSGDGPIVLILAPTRELAQQIQEVANSFGEMAA-VRNTCIFGGAPKG 226
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L++G+++ IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 227 PQAHDLEKGIEICIATPGRLIDFLEKGTTNLYRCTYLVLDEADRML-DMGFEPQIRKIIE 285
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE-EFLVDCSGDQESD 506
Q L +AT P E+ L E F + + G +S ++D + E D
Sbjct: 286 QIRPDRQVLMWSATWPKEV-RALAEDFLTDYIHLNIGSLTLSANHNITQIIDVCQEYEKD 344
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K LLQ I +KTI+F K
Sbjct: 345 L--------KLYRLLQEIGTEKENKTIIFVETK 369
>gi|262171576|ref|ZP_06039254.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
gi|261892652|gb|EEY38638.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
Length = 412
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 17 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K +S+ V GG ++ Q
Sbjct: 77 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQAQ 130
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 131 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDCL 189
Query: 450 PVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 190 PSEVQFLLFSATL 202
>gi|294658755|ref|XP_461087.2| DEHA2F16720p [Debaryomyces hansenii CBS767]
gi|218512019|sp|Q6BL34.2|DBP10_DEBHA RecName: Full=ATP-dependent RNA helicase DBP10
gi|202953360|emb|CAG89469.2| DEHA2F16720p [Debaryomyces hansenii CBS767]
Length = 932
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 17/199 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G S +++ ++ ++ F +P+ IQ P ++E + + ++GSGKT A+ LP+++
Sbjct: 98 SFPSFGFSKFLLTNISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVE 157
Query: 329 RLRQEELQGLSKSTSGSPRV----VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+L+ S SPRV +IL+P+ ELASQ + SK G RS+V+ GG
Sbjct: 158 KLK-----------SHSPRVGVRAIILSPSRELASQTFKQVKEFSK-GTDLRSIVLIGGD 205
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ Q ++ DV++ATPGRF+ L E L+L + + DE D LF + F L
Sbjct: 206 SLEEQFSSMMTNPDVIVATPGRFLHLKVEMELELKTVEYIVFDEADRLF-EMGFAEQLNE 264
Query: 445 LISSSPVTAQYLFVTATLP 463
LI++ P + Q L +ATLP
Sbjct: 265 LIAALPSSRQSLLFSATLP 283
>gi|443712578|gb|ELU05832.1| hypothetical protein CAPTEDRAFT_148777 [Capitella teleta]
Length = 902
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 131/272 (48%), Gaps = 24/272 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ +G S ++ + R+ + P+ IQ P +++GK + ++GSGKT A+L+P+ ++
Sbjct: 151 FQSMGLSHHVFTGIMRRGYKVPTPIQRKTIPLILDGKDVVAMARTGSGKTAAFLIPMFEK 210
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ G R +ILAPT ELA Q L + L K + V+ GG + Q
Sbjct: 211 LKGHLPTG--------ARALILAPTRELALQTLKFTKELGKF-TGLKPAVILGGDSMENQ 261
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ E D+LIATPGRFM ++ E ++L ++ + DE D LF + F L ++
Sbjct: 262 FAAIHENPDILIATPGRFMHILVEMEMKLSEVQYVVYDEADRLF-EMGFSEQLHEILRRL 320
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q L +ATLP + + D ++ +ISP L+ + C D
Sbjct: 321 PETRQTLLFSATLPKLLVDFAKAGLHDPSLIRLDVDSKISPHLQLQFLQCRSD------- 373
Query: 510 ETAFLNKKSALLQLIEK--SPVSKTIVFCNKK 539
+K + LL L+ P +T+VF K
Sbjct: 374 -----DKVALLLHLLRNVIKPSEQTVVFLATK 400
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 141/278 (50%), Gaps = 33/278 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG S ++++++ + + +PS IQ P V+EGK + A Q+G+GKT A+ LP++
Sbjct: 2 SFKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPILS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + + + + + +IL PT ELA+Q+ N RS K + ++ VV GG
Sbjct: 62 M-----FENTTPAAANNVKALILTPTRELAAQIDENIRSYGKH-LNLKTQVVFGGVGINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR M L ++ ++ L +LDE D + D F ++ +++
Sbjct: 116 QMIKLRRGVDILVATPGRLMDLYQQRAVKFSQLEILVLDEADRML-DMGFIHDIKKIMAI 174
Query: 449 SPVTAQYLFVTAT-------LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501
P Q L +AT L I N VE+ + K + + +E+ ++
Sbjct: 175 LPKKRQNLLFSATFSDDIRKLAKTIVNNPVEISVNTK-------NSTATAVEQVIIPV-- 225
Query: 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DKT NK + L LI ++ + +VFC K
Sbjct: 226 ----DKT------NKNTLLSHLIIENNWHQVLVFCRTK 253
>gi|347760106|ref|YP_004867667.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347579076|dbj|BAK83297.1| DNA/RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 568
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 137/273 (50%), Gaps = 26/273 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S+ + ++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 97 FSELGLSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPML-- 154
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E LQG S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 155 ---EILQG-SRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGESMAEQ 209
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L + G L L + ++DE D + D F ++ ++S
Sbjct: 210 KEVLNRGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRML-DMGFIPDIEKIVSML 268
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q LF +AT+ EI +L + F P V P ++ +E L G
Sbjct: 269 SPLRQTLFFSATMAPEI-RRLADAFLRNPKEITVSRPS--SVASTIETGLAIVDGK---- 321
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ AL +L+ +S + IVFCN+K
Sbjct: 322 --------DKRRALRKLLRESDMQNAIVFCNRK 346
>gi|309776780|ref|ZP_07671754.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
3_1_53]
gi|308915528|gb|EFP61294.1| ATP-dependent RNA helicase RhlE [Erysipelotrichaceae bacterium
3_1_53]
Length = 438
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 112/198 (56%), Gaps = 12/198 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L ++ +++++ Q +L P+ IQ A P ++G+ + Q+G+GKT A+ +P IQ
Sbjct: 3 FQTLNITEPILKAINEQGYLTPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN-CRSLSKCGVPFRSMVVTGGFRQKT 388
L + E + + R +I+ PT ELA Q+ N C G+ RS V+ GG QK
Sbjct: 63 LNRHEKRYI--------RSLIVTPTRELAIQIQENICAYAKHTGI--RSAVIFGGVPQKP 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+ GVD+L+ATPGR LI++GI+ + + ILDE D + D F ++ LI+
Sbjct: 113 QERILKAGVDILVATPGRLNDLIQQGIVDIGRIEIFILDEADRML-DMGFLPDVKRLIAK 171
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 172 LPKKKQTLFFSATMPKEI 189
>gi|407789880|ref|ZP_11136978.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
gi|407205702|gb|EKE75670.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
Length = 462
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++++ Q + PS IQA A P V+EG+ + A Q+G+GKT + LP++
Sbjct: 5 TFADLGLSKALLDAVAEQGYEHPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPLLH 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L G SK R ++L PT ELA+QV + + K +P R VV GG +
Sbjct: 65 L-----LSGGSKVQGNQVRALVLTPTRELAAQVAESVNTYGKH-LPLRCQVVFGGVKINP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G DVL+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 119 QMMALRRGTDVLVATPGRLLDLYQQNAVRFNQLEVLVLDEADRML-DMGFIHDIKKILAV 177
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 178 LPPKRQNLLFSATFSDEI 195
>gi|418300341|ref|ZP_12912167.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355533754|gb|EHH03074.1| dead-box ATP-dependent RNA helicase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 490
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 141/273 (51%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + + + R +ILAPT EL +Q+ N RS K P R V GG
Sbjct: 63 MLMKQA----DRPANRTCRTLILAPTRELVNQIGENLRSFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLSHNYLTDPVKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS + ++P + IVF K
Sbjct: 233 KTD----LLKKS-----LNENPDGRAIVFLRTK 256
>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
Length = 432
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 136/272 (50%), Gaps = 23/272 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I++L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKTLGVCDELIQALQKQGIKEPTPIQEQSIPVVFKGNDVIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + + + + + GG +
Sbjct: 62 QRVHTDVHQ---------EQVLIIAPTRELIKQIADEAKEIGAI-LNVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QL+ L V++ TPGR + K G L L +R +LDE D + + F ++SLIS
Sbjct: 112 AQLQQLGRRPQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLH-MGFLPDIESLIS 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + ++++++
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMSKPVSVTAEGKHVTLESIDQRVYMMNPEEKTER 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
L+++IE+ IVFCNK+
Sbjct: 231 ------------LIKMIEEDNPFLAIVFCNKR 250
>gi|295106692|emb|CBL04235.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 530
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 20/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++++ + P+ +Q A P V+EG+ I A +G+GKT A+LLP++
Sbjct: 4 FADLGLSKDALAAVEKLGYENPTPVQEQAIPLVLEGRDLIAAASTGTGKTAAFLLPILST 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + K + +PRV++++PT ELA Q+ C +S+ F + V GG Q
Sbjct: 64 LPR------VKGRNRAPRVLVVSPTRELAQQIARTCMQISRQTRHF-TTTVFGGTPYGPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ G DVLIATPGR L+K G++ L ++ +LDE D + D F + +++ ++
Sbjct: 117 IKELRGGTDVLIATPGRLKDLMKRGVVNLSSVEVLVLDEADRML-DMGFLPDVTTIVDAT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+ I L + D +V + +E+F++
Sbjct: 176 PECRQTLLFSATIDQSIQKNLGSLLNDPAMVEIARNGETAKTVEQFMMPIKN-------- 227
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
NK L ++ + + IVF K+
Sbjct: 228 ----FNKPELLEAVLREKGSERIIVFARTKN 254
>gi|113954719|ref|YP_730508.1| DNA and RNA helicase [Synechococcus sp. CC9311]
gi|113882070|gb|ABI47028.1| DNA and RNA helicase [Synechococcus sp. CC9311]
Length = 426
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L+ + + PS IQ A P V+ G+ + A Q+G+GKT + LP+++R
Sbjct: 17 FDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLER 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G + R ++L PT ELA+QVL++ R SK + S VV GG + Q
Sbjct: 77 LNHGARPGRLQI-----RALVLTPTRELAAQVLASVREYSKY-LQLTSDVVFGGVKINPQ 130
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ LQ+GVDVL+ATPGR + L+++G ++ + +LDE D + D F ++ +IS
Sbjct: 131 IQRLQKGVDVLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRML-DMGFIHDIRRVISRL 189
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT I
Sbjct: 190 PDRRQTLMFSATFSAPI 206
>gi|401679589|ref|ZP_10811516.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219523|gb|EJO50391.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 432
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 23/272 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRIHTDVHQ---------EQVLIIAPTRELIKQISDEAKVLGAV-LDVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL+ L V++ TPGR + K G L L ++R +LDE D + + F +++LI
Sbjct: 112 SQLQQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + + DK
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE---DK 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
TP L+++I++ IVFCNK+
Sbjct: 228 TPR---------LIKMIQEDNPYLAIVFCNKR 250
>gi|383758280|ref|YP_005437265.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381378949|dbj|BAL95766.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 466
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 141/271 (52%), Gaps = 15/271 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +++ Q + P+ IQA A P V++G + Q+G+GKT + LP++Q
Sbjct: 2 NFTDLGLAEPLLRAVRDQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + S+ + R ++L PT ELA+QV + R+ K +P SMV+ GG +
Sbjct: 62 RLSASKPVRDSRGRI-AVRALVLTPTRELAAQVEESVRAYGKY-LPLTSMVMFGGVGMQP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + +G L L N++ +LDE D + D F ++ +++
Sbjct: 120 QIDRLKKGVDILVATPGRLLDHHGQGTLDLSNVQILVLDEADRML-DMGFIHDIKKVLAV 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D +++ P + +E + + D + K
Sbjct: 179 LPQKKQSLLFSATFSDEI-----KALAD-RLLNQPAL------IEVARRNATADTIAQKV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK L LI + + +VF K
Sbjct: 227 YPVGREKKKELLAHLIRQGDWHQVLVFTRMK 257
>gi|237806840|ref|YP_002891280.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237499101|gb|ACQ91694.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 489
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ ++K + + PS IQ A P V+ G+ + A Q+G+GKT + LP++
Sbjct: 2 SFTELGLSEPLLRAVKDKGYDTPSPIQLQAIPAVLAGQDVMAAAQTGTGKTAGFTLPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + + S + R ++L PT ELA+QV + + K +P +S+VV GG
Sbjct: 62 RLSRG-----NPARSNAVRALVLTPTRELAAQVAESVTTYGKY-LPLKSVVVFGGVNINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++G DVL+ATPGR + L+ + L L ILDE D + D F ++ +I+
Sbjct: 116 QMLAMRKGADVLVATPGRLLDLVSQNALHFRQLEVLILDEADRML-DMGFIRDIRKIINM 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKDRQTLMFSATFSDEI 192
>gi|188533127|ref|YP_001906924.1| ATP-dependent RNA helicase SrmB [Erwinia tasmaniensis Et1/99]
gi|188028169|emb|CAO96027.1| ATP-dependent RNA helicase [Erwinia tasmaniensis Et1/99]
Length = 442
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 128/271 (47%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTHLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E E DV++AT GR + IKE + ILDE D + D F ++++ +
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRML-DMGFAQDIETISAE 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+ Q L +ATL E E +++ P P E +D
Sbjct: 178 TRWRKQTLLFSATLEGEAIKDFAE-----RILNEPVEIEADPARRERKKIQQWYYRADDI 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K + LL L+++ V++ +VF K+
Sbjct: 233 K-----HKTALLLHLLKQPEVTRAVVFVRKR 258
>gi|91977976|ref|YP_570635.1| DEAD/DEAH box helicase-like protein [Rhodopseudomonas palustris
BisB5]
gi|91684432|gb|ABE40734.1| DEAD/DEAH box helicase-like [Rhodopseudomonas palustris BisB5]
Length = 482
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 144/272 (52%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L+ +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALQEENYTIPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ K+ RV++L+PT EL+ Q+L + + + + S + GG
Sbjct: 69 RILADRIKPQPKNC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSSTLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P+ Q LF +AT+P +I + ++ D +V + P V + ++ + +
Sbjct: 183 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP-------------VASTVERINQR 229
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K + L Q++++ V++ +VF K
Sbjct: 230 VIHLDHSAKPAMLAQILQQDGVNQALVFTRTK 261
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 109/201 (54%), Gaps = 5/201 (2%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S+ +F L ++ ++ ++ + P+ IQA A P V+EG + A Q+G+GKT + LP
Sbjct: 3 SQITFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLP 62
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL Q G PR +ILAPT ELA+QV + R S+ RSMV+ GG
Sbjct: 63 ILHRLLNNPQQ---NRKPGRPRALILAPTRELAAQVEESVRLYSQH-TRLRSMVMFGGVN 118
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q L++ +D+L+ATPGR + +++ + L + +LDE D + D F ++ +
Sbjct: 119 INPQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRML-DMGFIRDIRKI 177
Query: 446 ISSSPVTAQYLFVTATLPVEI 466
IS PV Q L +AT EI
Sbjct: 178 ISLMPVDRQTLLFSATFSDEI 198
>gi|405965019|gb|EKC30448.1| Putative ATP-dependent RNA helicase DDX4 [Crassostrea gigas]
Length = 779
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 112/204 (54%), Gaps = 4/204 (1%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S K+F E G + +E++++ + +P+ +Q + P V+ G+ + Q+GSGKT A+LLP
Sbjct: 329 SIKNFDEAGLYEKFLENVRKAQYEKPTPVQKYSIPIVMAGRDLMACAQTGSGKTAAFLLP 388
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
V+ + + + G S S P+ +++APT ELA Q+ + R + G R++V+ GG
Sbjct: 389 VLTGMMKNGISGSSFSEVQEPQALVVAPTRELAVQIFMDARKFAH-GTMLRAVVLYGGTS 447
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVAL 442
QL +++G +L+ TPGR + +I +G + L L+ ILDE D + + D +
Sbjct: 448 VGYQLRQVEQGTHILVGTPGRLIDIIGKGKISLSKLKYLILDEADRMLDMGFGPDIRKLV 507
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ L + Q L +AT P EI
Sbjct: 508 EELGTPPKTERQTLMFSATFPEEI 531
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 111/200 (55%), Gaps = 13/200 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++E++ ++ + +PS IQ A P V++GK + A Q+G+GKT + LP+
Sbjct: 3 FSKLGLSDSILEAVTKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPI--- 59
Query: 330 LRQEELQGLSKST---SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
LQ LSK T S R +IL PT ELA+QV ++ K +P +S VV GG +
Sbjct: 60 -----LQILSKGTPAKSNQVRTLILTPTRELAAQVNASVIDYGKQ-LPLKSTVVFGGVKI 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q++ L+ GVD+L+ATPGR + L + ++ L + DE D + D F ++ ++
Sbjct: 114 NPQMQKLRGGVDILVATPGRLLDLYSQNAVKFDQLEILVFDEADRML-DMGFIHDIKRIL 172
Query: 447 SSSPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 173 KILPKNRQTLMFSATFSEEI 192
>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429760012|ref|ZP_19292504.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429178724|gb|EKY19996.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
Length = 432
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 23/272 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRIHTDVHQ---------EQVLIIAPTRELIKQISDEAKVLGAV-LDVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL+ L V++ TPGR + K G L L ++R +LDE D + + F +++LI
Sbjct: 112 SQLQQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + + DK
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE---DK 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
TP L+++I++ IVFCNK+
Sbjct: 228 TPR---------LIKMIQEDNPYLAIVFCNKR 250
>gi|409405536|ref|ZP_11253998.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386434085|gb|EIJ46910.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 513
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 4/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG SD ++ ++ Q + P+ IQA A P V+ G + Q+G+GKT + LP++Q
Sbjct: 2 SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ R +ILAPT ELA+QV + R K +P S + GG
Sbjct: 62 RLSAMPRQKINGHL--PIRALILAPTRELAAQVEESVRQYGKY-LPLTSACIFGGVGIHP 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + +++G + L +++ +LDE D + D F ++ ++++
Sbjct: 119 QIALLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRML-DMGFIRDIRKVLAA 177
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 178 LPPKRQNLLFSATFADEI 195
>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
Length = 432
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 23/272 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSFK LG D +I +L++Q P+ IQ + P V +G I Q+G+GKTLA+LLP++
Sbjct: 2 KSFKSLGVCDELISTLQKQGIKEPTPIQEQSIPIVFKGNDIIAKAQTGTGKTLAFLLPIL 61
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
QR+ + Q +V+I+APT EL Q+ + L + + + GG +
Sbjct: 62 QRIHTDVHQ---------EQVLIIAPTRELIKQISDEAKVLGAV-LDVDILPLIGGKTIE 111
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+QL+ L V++ TPGR + K G L L ++R +LDE D + + F +++LI
Sbjct: 112 SQLQQLGRRPHVILGTPGRLLDHAKRGSLHLDSIRRVVLDEADQMLH-MGFLPDIENLIG 170
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ Q L +AT+P +I N V G H +++ + + + DK
Sbjct: 171 QTDANRQLLLFSATIPDKIRNLAKAYMTKPVSVTAEGKHITLDSIDQRVYMMNPE---DK 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
TP L+++I++ IVFCNK+
Sbjct: 228 TPR---------LIKMIQEDNPYLAIVFCNKR 250
>gi|300722435|ref|YP_003711723.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
gi|297628940|emb|CBJ89523.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus nematophila ATCC 19061]
Length = 498
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 109/200 (54%), Gaps = 5/200 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ LG ++ +++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 NFESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + Q + R +IL PT ELA+QV N + SK + RS VV GG
Sbjct: 62 RLSESPTQVKGRRPV---RALILTPTRELAAQVGENVHNYSKY-LKLRSFVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L ++ ILDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRML-DMGFIHDIRRILNK 176
Query: 449 SPVTAQYLFVTATLPVEIYN 468
P Q L +AT EI N
Sbjct: 177 LPAKRQNLLFSATFSDEIKN 196
>gi|193606171|ref|XP_001946134.1| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
[Acyrthosiphon pisum]
Length = 641
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 6/202 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFKE G + ++ +L N+ P+ IQ A P ++ GK I + Q+GSGKT A++LP++
Sbjct: 223 SFKESGLCEVLLSNLTECNYGNPTPIQKYAIPIIMNGKDMIASAQTGSGKTAAFVLPILN 282
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E + + P+ +IL+PT ELASQ+ S LS G R + GG
Sbjct: 283 SLISEPSELVFDYNHCEPQCLILSPTRELASQISSFAFKLSN-GTSIRCRALYGGTAVYH 341
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E + GV +++ATPGR + + G++ +LR +LDE D + D F A+Q + S
Sbjct: 342 QREKILSGVHIIVATPGRLIDFVNRGLITFSSLRFIVLDEADRML-DMGFTPAIQCIFSD 400
Query: 449 SPVTA----QYLFVTATLPVEI 466
+ + + L +ATLP+++
Sbjct: 401 NTMVSSAERSTLMFSATLPIDV 422
>gi|206564651|ref|YP_002235414.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
J2315]
gi|444357064|ref|ZP_21158648.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444373030|ref|ZP_21172445.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198040691|emb|CAR56677.1| putative ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia
J2315]
gi|443592438|gb|ELT61240.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|443606699|gb|ELT74462.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
Length = 484
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLHNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELDAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 LPAKRQTLLFSATFSDEI 193
>gi|115374548|ref|ZP_01461828.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
gi|310823766|ref|YP_003956124.1| ATP-dependent helicase, dead/deah-box family [Stigmatella
aurantiaca DW4/3-1]
gi|115368418|gb|EAU67373.1| DbpA RNA binding domain family [Stigmatella aurantiaca DW4/3-1]
gi|309396838|gb|ADO74297.1| ATP-dependent helicase, DEAD/DEAH-box family [Stigmatella
aurantiaca DW4/3-1]
Length = 812
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 30/292 (10%)
Query: 249 TDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSC 308
T+ P + +Y AD SF++L S+ + ++ + + P+ +QA AF P +EG+
Sbjct: 16 TETPSRPAEYVAD------VSFEDLHLSEPLRRAIAERGYTHPTPVQAKAFQPAMEGRDL 69
Query: 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368
I+ ++G+GKT A+ LP+++++ +E + R +IL PT ELA QV R+L
Sbjct: 70 IVRSKTGTGKTAAFGLPLLEKIPADERR---------VRALILCPTRELALQVADELRAL 120
Query: 369 SKC-GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
K GV + + GG K Q + L+EG +++ TPGR I G L+L A+LD
Sbjct: 121 GKYKGV--KVAAIYGGASMKQQEDALEEGTPIIVGTPGRVFDHIGRGNLKLDACDHAVLD 178
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D + N + F + ++ P Q L +AT+P +I N + + + ++ G
Sbjct: 179 EADEMLN-QGFYEEVTRILDRLPKNRQVLLFSATVPTDIQNLIARYTTNAETLLLSGDVF 237
Query: 488 ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ D SD P K L+ ++EK+ I+FCN +
Sbjct: 238 TVEHIHHIRYDV-----SDAFP------KPRNLIYVLEKAEPPNAIIFCNTR 278
>gi|444305942|ref|ZP_21141717.1| DNA/RNA helicase [Arthrobacter sp. SJCon]
gi|443481746|gb|ELT44666.1| DNA/RNA helicase [Arthrobacter sp. SJCon]
Length = 557
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 115/200 (57%), Gaps = 3/200 (1%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ KSF + + ++ESL P IQAM P + G I ++G+GKTL + +
Sbjct: 34 IAEKSFADYNVREDIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGI 93
Query: 325 PVIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
P +QR+ ++ G +K + G+P+ +++ PT ELA QV ++ ++ S+ R + GG
Sbjct: 94 PALQRVIGQDDPGYAKLAVPGAPQALVIVPTRELAVQVANDLQTASRK-RNARIATIYGG 152
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q+E L++GV+V++ TPGR + L K+ L L N++ +LDE D + D F ++
Sbjct: 153 RAYEPQVEALKQGVEVVVGTPGRLIDLYKQKHLSLKNVKIVVLDEADEML-DLGFLPDVE 211
Query: 444 SLISSSPVTAQYLFVTATLP 463
+LI+++P Q L +AT+P
Sbjct: 212 TLIAATPAVRQTLLFSATMP 231
>gi|443672982|ref|ZP_21138058.1| DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443414467|emb|CCQ16396.1| DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 583
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 113/208 (54%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++ +L R + PS IQ A P + GK+ + Q+GSGKTLA+ LP++Q
Sbjct: 30 TFADLGLPEAVVAALARNSITVPSPIQEKALPDAIAGKNVLGRAQTGSGKTLAFGLPILQ 89
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + +K PR ++L PT ELA QV+ + + R M GG
Sbjct: 90 RLSLHTDRPAAK----RPRSLVLVPTRELAFQVVESLAPYANA-QGLRVMPAVGGTPFNK 144
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+ATPGR +++G L ++ LDE D + D F ++++++
Sbjct: 145 QVEQLRRGVDVLVATPGRLADHLRQGTCILDSIEITALDEADQMA-DMGFLPEVRAVLAD 203
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
+P Q + +ATL E+ + + + PD
Sbjct: 204 TPADGQRMLFSATLDREVQSLVRQFLPD 231
>gi|374815172|ref|ZP_09718909.1| dead/deah box helicase domain-containing protein [Treponema
primitia ZAS-1]
Length = 649
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 141/279 (50%), Gaps = 38/279 (13%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQ 328
F G SD ++E+L R+ F PS IQ++A P ++ + I+ ++G+GKT A+ +P+++
Sbjct: 9 FSSFGLSDDILEALTRKGFTAPSSIQSIALPRLLADQGHLIVKARTGTGKTAAFGIPLVE 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RLRQ + +PR +IL PT ELA QV SL+ +P R V GG +T
Sbjct: 69 RLRQ---------SGHAPRALILTPTRELALQVAKEIASLASSAIP-RITAVYGGASIRT 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSL 445
Q+ +L+ G ++++ TPGR M L+ +L L + ILDE D + + ED E L+S+
Sbjct: 119 QILDLKRGTEIVVGTPGRVMDLMDRKVLDLSAVDWFILDEADEMLDMGFLEDVEHILKSV 178
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
S V LF +AT+P P K+V R G + L D + D E
Sbjct: 179 KSDRRVA---LF-SATMP----------DPILKIV------REHIGAVDILEDTTPDDEK 218
Query: 506 DKTPETAFLNKK----SALLQLIEKSPVSKTIVFCNKKS 540
+ + KK AL +LI+ + ++FC K+
Sbjct: 219 PLVDQYYLVLKKEDRLEALRRLIDSAESFYGLIFCATKA 257
>gi|380014980|ref|XP_003691490.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 728
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 137/276 (49%), Gaps = 22/276 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 108 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 167
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + LS+ P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 168 VHINHQPR--LSRGD--GPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 220
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 221 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 279
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 280 IEQIRPDRQVLMWSATWPKEV-QALAEDFLSDYIQINIGSLTLAANHNIRQIVEIC---Q 335
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E +K K S LL+ I K SK I+F K
Sbjct: 336 EHEKEM------KLSNLLREIGKDRGSKMIIFVETK 365
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 13/203 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++L+ATPGR + +++ + L +R +LDE D + D F LQ
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRML-DMGFLPDLQ 187
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 188 RIINLLPAHRQTLLFSATFSPEI 210
>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase [Dinoroseobacter shibae DFL 12]
gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
12]
Length = 493
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 143/277 (51%), Gaps = 23/277 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LR+ ++ + PR ++LAPT ELA+QV N +K +++++ GG K Q
Sbjct: 64 LRK------GRARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLI-GGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + +
Sbjct: 117 DLLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRML-DMGFIPDIEKIFQLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMG---PGMHRISPGLEEFLVDCSGDQE 504
P T Q LF +AT+ EI ++ F +V + I+ GL +F +
Sbjct: 176 PFTRQTLFFSATMAPEI-ERITNTFLSNPARVEVARQSTTSETITQGLVQF-------KP 227
Query: 505 SDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKK 539
S + TAF K+ L LIE+ I+FCN+K
Sbjct: 228 SRRDRATAFKEKREMLRALIEREGDGCRNAIIFCNRK 264
>gi|89096443|ref|ZP_01169336.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89089297|gb|EAR68405.1| ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 543
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 10/200 (5%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
R +FK LG SD +I L Q P+ +Q A P V+EG+ I Q+G+GKTLA++LP+
Sbjct: 21 RLNFKHLGISDPLIHKLAAQGIDEPTAVQEKAIPIVLEGRDIIAQAQTGTGKTLAFILPI 80
Query: 327 IQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
++++ ++GS + +I+ PT ELA Q+ S + L + + V GG
Sbjct: 81 LEKI---------DPSNGSTQALIVTPTRELALQITSEVKKLIEDMPDLNVLAVYGGQDV 131
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL LQ +++ATPGR + ++ G +QL + +LDE D + + F ++ +I
Sbjct: 132 EKQLHKLQRQTQIVVATPGRLLDHLRRGTVQLDEVSFLVLDEADQMLHI-GFLNEMELII 190
Query: 447 SSSPVTAQYLFVTATLPVEI 466
S +P + Q + +AT+P +I
Sbjct: 191 SQTPASRQTMLFSATMPDDI 210
>gi|414165169|ref|ZP_11421416.1| hypothetical protein HMPREF9697_03317 [Afipia felis ATCC 53690]
gi|410882949|gb|EKS30789.1| hypothetical protein HMPREF9697_03317 [Afipia felis ATCC 53690]
Length = 500
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 139/272 (51%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLADPISRALTEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ K+ RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 63 RILENRVRPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSATLAIGGVPMGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ + +GV+VL+ATPGR + L++ ++L + +LDE D + D F ++ +++
Sbjct: 118 QVRAMMQGVEVLVATPGRLLDLVQGNAVRLNQVEFLVLDEADRML-DMGFINDIRKVVAK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P +I + D +V + P V + ++ +
Sbjct: 177 LPARRQTLFFSATMPKDIAELAEHMLRDPARVAVTP-------------VASTAERIVQR 223
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K L +LI+ PV++ +VF K
Sbjct: 224 IIQVDHSAKPGILSELIKSEPVNRALVFTRTK 255
>gi|373124645|ref|ZP_09538486.1| hypothetical protein HMPREF0982_03415 [Erysipelotrichaceae
bacterium 21_3]
gi|422328761|ref|ZP_16409787.1| hypothetical protein HMPREF0981_03107 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371659039|gb|EHO24308.1| hypothetical protein HMPREF0981_03107 [Erysipelotrichaceae
bacterium 6_1_45]
gi|371659613|gb|EHO24878.1| hypothetical protein HMPREF0982_03415 [Erysipelotrichaceae
bacterium 21_3]
Length = 437
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 114/197 (57%), Gaps = 10/197 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L ++ +++++K Q ++ P+ IQ A P ++G+ + Q+G+GKT A+ +P IQ
Sbjct: 3 FQTLHITEPILKAVKEQGYVDPTPIQEQAIPYALQGRDILGCAQTGTGKTAAFSIPTIQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L++ Q + R +I+ PT ELA Q+ N + ++ RS V+ GG QK Q
Sbjct: 63 LKKHYKQSI--------RSLIVTPTRELAIQIQENITAYAQYTT-IRSAVIFGGVPQKPQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ GVD+L+ATPGR LI++GI+ + ++ ILDE D + D F ++ +I+
Sbjct: 114 ERILKAGVDILVATPGRLNDLIQQGIIDISHIEIFILDEADRML-DMGFLPDVKRIIAKL 172
Query: 450 PVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 173 PKRKQTLFFSATMPSEI 189
>gi|421863783|ref|ZP_16295476.1| ATP-dependent RNA helicase PA3950 [Burkholderia cenocepacia H111]
gi|358076109|emb|CCE46354.1| ATP-dependent RNA helicase PA3950 [Burkholderia cenocepacia H111]
Length = 484
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELDAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 LPAKRQTLLFSATFSDEI 193
>gi|328780921|ref|XP_394723.3| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
mellifera]
Length = 726
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 135/276 (48%), Gaps = 22/276 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 106 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 165
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + S P V+ILAPT ELA Q+ S R S C R+ + GG
Sbjct: 166 VHINHQP----RLSRGDGPIVLILAPTRELAQQIQSVARDFGSSSC---IRNTCIFGGSP 218
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 219 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 277
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 278 IEQIRPDRQVLMWSATWPKEV-QALAEDFLSDYIQINIGSLTLAANHNIRQIVEIC---Q 333
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E +K K S LL+ I K SK I+F K
Sbjct: 334 EHEKEM------KLSNLLREIGKDRGSKMIIFVETK 363
>gi|255572963|ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 505
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 150/291 (51%), Gaps = 22/291 (7%)
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+QR + + +G + KSF+++G DY++E + R F+ P+ IQA +P ++G+ I
Sbjct: 82 RQRREITVEGRDVPKPVKSFRDVGFPDYVLEEVTRAGFVEPTPIQAQGWPMALKGRDLIG 141
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKTLAYLLP I + + + + P V++LAPT ELA Q+ +K
Sbjct: 142 IAETGSGKTLAYLLPAIVHVNAQPIL----APGDGPIVLVLAPTRELAVQIQQEA---TK 194
Query: 371 CGVPFR--SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428
G R + + GG + Q+ +LQ+GV+++IATPGR + +++ L + +LDE
Sbjct: 195 FGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHHTNLRRVTYLVLDE 254
Query: 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRI 488
D + D F+ ++ ++S Q L+ +AT P E+ +L F + P +++
Sbjct: 255 ADRML-DMGFDPQIRKIVSQIRPDRQTLYWSATWPKEV-EQLARQF-----LYNP--YKV 305
Query: 489 SPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
G + + + Q D E NK LL+ I S+ ++F + K
Sbjct: 306 VIGSADLKANHAIRQHVDIVSENQKYNKLVKLLEDIMDG--SRILIFMDTK 354
>gi|218188023|gb|EEC70450.1| hypothetical protein OsI_01481 [Oryza sativa Indica Group]
Length = 512
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 12/230 (5%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K SAD + SF +++ K F RPS IQA A+P +++G+ I +GS
Sbjct: 83 KGSADAKYAPLSSFAATALPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGS 140
Query: 317 GKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN-CRSLSKCGVPF 375
GKT+A+ +P + +R++ G + G PRV++L+PT ELA Q+ C + + CG+
Sbjct: 141 GKTIAFGVPALMHVRRK--MGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGIS- 197
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
S+ + GG + Q+ L+ GVD++I TPGR LI+ GI +L ++ +LDE D + D
Sbjct: 198 -SVCLYGGTSKGPQISALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRML-D 255
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD---CKVVMG 482
FE +++++S + Q + +AT P ++ +L + F D KVV+G
Sbjct: 256 MGFEPEVRAILSQTASVRQMVMFSATWPPAVH-QLAQEFMDPNPIKVVIG 304
>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
Length = 502
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 141/272 (51%), Gaps = 15/272 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + ++++++ + P+ IQA A P +EGK + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPMITS 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K V ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYAKY-VKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + S +
Sbjct: 117 EQLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + + + S +E+ V G ++ +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSNPERIEVARQATASETIEQGAVFFKGSRKDREGS 235
Query: 510 ETAFLNKKSALLQLIEK--SPVSKTIVFCNKK 539
E K++ L QLI++ + IVFCN+K
Sbjct: 236 E-----KRTVLRQLIDREGEKCTNAIVFCNRK 262
>gi|413950350|gb|AFW82999.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 778
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 148/301 (49%), Gaps = 28/301 (9%)
Query: 246 YEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV 303
Y T+ ++RH+ + GD SF+ G +++ ++R F P+ IQA ++P +
Sbjct: 121 YPSTEAYRRRHEITVTGDNVPAPITSFEAGGFPSEILKEIQRAGFASPTPIQAQSWPIAM 180
Query: 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363
+ + + ++GSGKTL YLLP +++ L ST P V++LAPT ELA+Q+L
Sbjct: 181 QNQDVVAIAKTGSGKTLGYLLPGFMHIKR-----LQNSTRNGPTVLVLAPTRELATQILD 235
Query: 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423
+ + GG + QL +L GVDV++ATPGR +++ + L +
Sbjct: 236 EAMKFGRSSR-ISCTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRVSLKQVSY 294
Query: 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE---VFPDCKVV 480
+LDE D + D FE ++ ++ P Q L TAT P E+ ++ + V P +V
Sbjct: 295 LVLDEADRML-DMGFEPQIRKIVKEIPHRRQTLMYTATWPKEV-RRIADDLLVHP-LQVT 351
Query: 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV--SKTIVFCNK 538
+G ++E + + + Q E ++K L+ I +S V SK ++FC
Sbjct: 352 IG--------NVDELVANSAITQHI----EVITPSEKQRRLEQILRSQVSGSKILIFCTT 399
Query: 539 K 539
K
Sbjct: 400 K 400
>gi|410666269|ref|YP_006918640.1| DEAD/DEAH box helicase [Simiduia agarivorans SA1 = DSM 21679]
gi|409028626|gb|AFV00911.1| DEAD/DEAH box helicase [Simiduia agarivorans SA1 = DSM 21679]
Length = 434
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP+++
Sbjct: 4 TFDQLGLCAPILKAVAEQGYTTPSPIQAQAIPAVLKGQDVMAAAQTGTGKTAGFTLPILE 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R LQ + ++ S +V++L PT ELA+Q+ N + L +P RS VV GG
Sbjct: 64 R-----LQSMQRAASNHVKVLVLTPTRELAAQIEDNVK-LYSAHLPVRSTVVFGGVGINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GV++L+ATPGR + L + ++ L +LDE D + D F ++ ++
Sbjct: 118 QMMRLRKGVEILVATPGRLLDLHSQNAVKFNQLEILVLDEADRML-DMGFIHDIKRILKL 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPDRRQNLLFSATFSDEI 194
>gi|427403839|ref|ZP_18894721.1| hypothetical protein HMPREF9710_04317 [Massilia timonae CCUG 45783]
gi|425717457|gb|EKU80416.1| hypothetical protein HMPREF9710_04317 [Massilia timonae CCUG 45783]
Length = 414
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L + P+ +Q A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDQIVRTLDALAYHTPTAVQEQAIPAVLAGRDVMAAAQTGTGKTAGFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + G S + R +IL PT ELA QV + R+ ++ G+P R+MV GG
Sbjct: 62 RLAKSGTVG-----SNAVRALILVPTRELAEQVHESVRTYAE-GLPLRTMVAYGGVSINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDV++ATPGR + L ++ ++ ++ +LDE D + D F L L+
Sbjct: 116 QMMALRKGVDVMVATPGRLLDLQRQNAVRFNEVKTLVLDEADRML-DLGFARELDGLMKL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPKKRQTLLFSATFSDQI 192
>gi|78060377|ref|YP_366952.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77964927|gb|ABB06308.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 481
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +QA A P V+ GK + Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNLQDLNYQAPTPVQAKAIPAVLGGKDVMAGAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIAYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELNAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPAQRQTLLFSATFSDDI 193
>gi|296282684|ref|ZP_06860682.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
Length = 472
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 135/271 (49%), Gaps = 20/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD ++++++ + P+ IQA A PPV+ K I Q+G+GKT +++LP+I
Sbjct: 3 FADLGLSDKLLQAVEAAGYTEPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMIDI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L PR +ILAPT ELA+QV N K + ++ GG + Q
Sbjct: 63 LASGRRRAL------MPRSLILAPTRELAAQVAENFEKYGKQH-DLQLALLIGGVQMGDQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L EGVDVLIATPGR M L + G + L ++DE D + D F ++++ S
Sbjct: 116 VKALNEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRML-DMGFIPDIETICSKL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P I KL + F + P +S + + + K P
Sbjct: 175 PEPRQTLLFSATMPPPI-EKLAQKF-----LTNPKRIEVSRA-----ASTNENITAFKIP 223
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
A K+ L L+ V I+F N+K+
Sbjct: 224 VKA-REKRETLRWLLANDHVETAIIFANRKT 253
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 13/203 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTA-LRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++L+ATPGR + +++ + L +R +LDE D + D F LQ
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRML-DMGFLPDLQ 187
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 188 RIINLLPAHRQTLLFSATFSPEI 210
>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
Length = 539
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 140/277 (50%), Gaps = 26/277 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + + +++ Q + +P+ IQA A P V+ G + A Q+G+GKT + LP++
Sbjct: 21 TFADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILN 80
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL L + S + P R +IL PT ELA QV +N + +K P RS VV GG
Sbjct: 81 RLM--PLATENTSPARHPVRALILTPTRELADQVAANVHTYAKF-TPLRSTVVYGGVDIN 137
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ GV+++IATPGR + +++ + L ++ +LDE D + D F LQ +I+
Sbjct: 138 PQIQTLRRGVELVIATPGRLLDHVQQKSINLGQVQVLVLDEADRML-DMGFLPDLQRIIN 196
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P T Q L +AT EI KL + F +SP L E + S+
Sbjct: 197 LLPKTRQNLLFSATFSPEI-QKLAKSF------------MVSPTLIEV---ARRNATSEN 240
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
+ F +K+ A+ LI+ +S+ IVF N K
Sbjct: 241 IKQVIFALDSEEDKRMAVCHLIQSKALSQVIVFSNTK 277
>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
Length = 438
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 110/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG SD ++ ++ ++ + PS IQA A P V+E K + + Q+G+GKT + LP++Q
Sbjct: 2 SFKSLGLSDALLRAISKKGYTTPSPIQAKAIPLVLERKDVLASAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+ L K R +IL PT ELA+QV +N + S + RS V+ GG +
Sbjct: 62 LLSQQP--PLRKRPI---RALILTPTRELAAQVYANVKEYSTF-LDIRSTVIFGGVNARP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + L L + +LDE D + D F ++ +I
Sbjct: 116 QIATLRNGVDILVATPGRLLDLHSQKALSLAKVEMLVLDEADRML-DMGFLRDIKRVIEL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 VPKRRQNLLFSATFSKDI 192
>gi|404251857|ref|ZP_10955825.1| ATP-dependent RNA helicase [Sphingomonas sp. PAMC 26621]
Length = 431
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 134/271 (49%), Gaps = 18/271 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L S ++++L + + P+ IQA + P ++EG+ + Q+G+GKT A+ LP++ R
Sbjct: 9 FPDLALSPLILKALAEEGYATPTPIQAQSIPLLLEGRDMLGMAQTGTGKTAAFALPLLHR 68
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + G R+++LAPT EL SQ+ + S + + + + GG Q Q
Sbjct: 69 LAANP----RPAPKGGARILVLAPTRELVSQIAAGFESFGR-HLSLKVTTIFGGVSQFHQ 123
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVD+L+A PGR + L+ +G+ L L +LDE D + D F ++ L+++
Sbjct: 124 VAALDAGVDILVAAPGRLLDLVDQGLCDLSALEALVLDEADQML-DMGFAKPIERLVATL 182
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P L +AT+P I + D P I+P + D+ +
Sbjct: 183 PKDRHTLLFSATMPKAIAALAESLLTD------PASVEIAPP------STTVDRIAQSVM 230
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
NKK+ALL+L+ + + +VF +K+
Sbjct: 231 FLDAANKKTALLELLRTPEIGQAVVFTLQKN 261
>gi|386002133|ref|YP_005920432.1| ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210189|gb|AET64809.1| ATP-dependent RNA helicase, putative [Methanosaeta harundinacea
6Ac]
Length = 418
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 115/197 (58%), Gaps = 6/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L ++ + +L ++ + P+ IQA A P ++ G+ + Q+G+GKT A++LPV+QR
Sbjct: 3 FEDLDIAEPLQRALTKEGYANPTPIQAEAIPHLLRGEDLLGIAQTGTGKTAAFVLPVLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ +E ++ G+PR ++LAPT ELA+Q+ + + + + F V GG Q+ Q
Sbjct: 63 ISEER----RRTVPGAPRALVLAPTRELAAQIDESFGTYGQF-LQFSHAAVFGGVSQEPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L GV+ L+ATPGR + L+++G + L + +LDE D + D F + ++S+
Sbjct: 118 VKALSRGVEALVATPGRLLDLMEQGHIDLKGIEFFVLDEADRML-DMGFAKDVHRIVSAL 176
Query: 450 PVTAQYLFVTATLPVEI 466
P LF AT+ EI
Sbjct: 177 PKKRHSLFFAATMSREI 193
>gi|336124129|ref|YP_004566177.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335341852|gb|AEH33135.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 485
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ Q + PS IQA A P V+EGK + A Q+G+GKT + LP++
Sbjct: 23 SFASLGLSHAILKAVASQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILD 82
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++G K R +IL PT ELA+QV N + + +P RS V+ GG +
Sbjct: 83 LL----VKG-PKVGPNQVRALILTPTRELAAQVADNVATYGQ-NLPLRSEVIFGGVKVNP 136
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ GVD+L+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 137 QMMKMRRGVDILVATPGRLLDLYNQNAIKFNQLEILVLDEADRML-DMGFIRDIKKILAL 195
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 196 LPAKRQNLLFSATFSDEI 213
>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428786062|ref|ZP_19003545.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
gi|426275457|gb|EKV53192.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
Length = 442
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 128/271 (47%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL + +++SL+ + F RP+ IQA A PP +EG+ + + +G+GKT AYLLP +Q
Sbjct: 5 TFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + SG PR++IL PT ELA QV R L+K +TGG
Sbjct: 65 -----HLLDFPRKKSGPPRILILTPTRELAMQVADQARELAK-HTRLDIATITGGVAFMN 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
E E DV++AT GR + IKE + ILDE D + D F ++++ +
Sbjct: 119 HAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRML-DMGFAQDIETISAE 177
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+ Q L +ATL E E +++ P P E +D
Sbjct: 178 TRWRKQTLLFSATLEGEAIKDFAE-----RILNEPVEIEADPARRERKKIQQWYYRADDI 232
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K + LL L+++ V++ +VF K+
Sbjct: 233 K-----HKTALLLHLLKQPEVTRAVVFVRKR 258
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 13/203 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKY-TALRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++L+ATPGR + +++ + L +R +LDE D + D F LQ
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRML-DMGFLPDLQ 187
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 188 RIINLLPAHRQTLLFSATFSPEI 210
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 13/203 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKY-TALRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++L+ATPGR + +++ + L +R +LDE D + D F LQ
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRML-DMGFLPDLQ 187
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 188 RIINLLPAHRQTLLFSATFSPEI 210
>gi|162148995|ref|YP_001603456.1| cold-shock DEAD box protein A [Gluconacetobacter diazotrophicus PAl
5]
gi|209545253|ref|YP_002277482.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|161787572|emb|CAP57168.1| putative cold-shock DEAD box protein A [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532930|gb|ACI52867.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 423
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 139/275 (50%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA A P ++ G+ + Q+G+GKT A+ LP++Q
Sbjct: 3 TFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPILQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL L ++ RV++LAPT ELASQ+ + +S ++ + V+ GG Q
Sbjct: 63 RL----LTHHRRANPKGARVLVLAPTRELASQIDESFKSYARH-MRLSHTVIFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E ++ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ +++
Sbjct: 118 QVEAMRRGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRML-DMGFVRDIRRIVAE 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + D P +++P D+
Sbjct: 177 LPRDRQTLLFSATMPKSIADLAHGLLRD------PATVQVTP----------PSSTVDRI 220
Query: 509 PETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
+ NK++AL L++ V + +VF K
Sbjct: 221 RQAVMFVDTDNKRAALQLLVDSPKVERAVVFTLMK 255
>gi|410730255|ref|XP_003671307.2| hypothetical protein NDAI_0G02870 [Naumovozyma dairenensis CBS 421]
gi|401780125|emb|CCD26064.2| hypothetical protein NDAI_0G02870 [Naumovozyma dairenensis CBS 421]
Length = 991
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 18/258 (6%)
Query: 246 YEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG 305
+ T+ K +HK + SF G S ++ ++ ++ F +P+ IQ P +++
Sbjct: 117 FSTTNLEKSKHK---------KGSFPSFGLSKIIVTNITKRGFRQPTPIQRKTIPLILQN 167
Query: 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365
+ + ++GSGKT A++LP+I++++ + S+ R VIL+P+ ELA Q +
Sbjct: 168 RDIVGMARTGSGKTAAFILPMIRKIK-------THSSKIGARAVILSPSRELAMQTHNVF 220
Query: 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425
+ SK G RS+++TGG + Q + DV+IATPGRF+ L E L L ++ A+
Sbjct: 221 KEFSK-GTQLRSVLLTGGDSLEDQFGMMMNNPDVIIATPGRFLHLKVEMSLDLKSIEYAV 279
Query: 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM 485
DE D LF + F+ L L++S P Q L +ATLP + + + +V
Sbjct: 280 FDEADRLF-EMGFQDQLNELLASLPSNRQTLLFSATLPSSLVDFAKAGLTNPVLVRLDAE 338
Query: 486 HRISPGLEEFLVDCSGDQ 503
+IS LE + D+
Sbjct: 339 SKISENLEMLFLSTKNDE 356
>gi|134292532|ref|YP_001116268.1| DEAD/DEAH box helicase [Burkholderia vietnamiensis G4]
gi|134135689|gb|ABO56803.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 483
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q + +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRML-DLGFARELNAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPARRQTLLFSATFTDDI 193
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTANEPQKGRRPV----RALILTPTRELAAQVGENVREYSKY-LDIRSLVVFGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 117 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEVLVLDEADRML-DMGFIHDIRRVLAK 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPPKRQNLLFSATFSDDI 193
>gi|396925110|gb|AFN89213.1| vasa [Solea senegalensis]
Length = 567
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 29/281 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E + + +++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 212 TFEEAALCESLNKNISKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPMLQ 271
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + S P +I+APT EL +Q+ R + G R +VV GG
Sbjct: 272 RLMADGVASSRFSELQEPEAIIVAPTRELINQIYLEARKFAY-GTCVRPVVVYGGVSTGH 330
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ ++ G +VL TPGR M +I G + L LR +LDE D + D FE ++ L+ S
Sbjct: 331 QIRDVLRGCNVLCGTPGRLMDMIGRGKVGLSKLRYLVLDEADRML-DMGFEPEMRRLVGS 389
Query: 449 ----SPVTAQYLFVTATLPVEI------YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
+ Q L +AT P +I + K+ +F VV G
Sbjct: 390 PGMPTKENRQTLMFSATFPEDIQRLAADFLKVDYLFLAVGVVGGA--------------- 434
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
CS Q++ E NK+ LL +++ + + +TIVF KK
Sbjct: 435 CSDVQQT--FIEVGKFNKREQLLDILKTTGMDRTIVFVEKK 473
>gi|408788051|ref|ZP_11199774.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
gi|424911054|ref|ZP_18334431.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847085|gb|EJA99607.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|408486129|gb|EKJ94460.1| ATP-dependent RNA helicase [Rhizobium lupini HPC(L)]
Length = 490
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 141/273 (51%), Gaps = 21/273 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S+ ++ S+ + + P+ IQA A P ++EG+ I Q+G+GKT A+ LP+I+
Sbjct: 3 SFSELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIE 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ + + + R +ILAPT EL +Q+ N R+ K P R V GG
Sbjct: 63 MLMKQA----DRPANRTCRTLILAPTRELVNQIGENLRAFVKK-TPLRINQVVGGASINK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++G D+L+ATPGR + LI + L + +LDE D + D F L+ +
Sbjct: 118 QQLQLEKGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQML-DLGFIHDLRKISKM 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT+P I + D KV V PG + + +E+++ +G ++D
Sbjct: 177 VPAKRQTLLFSATMPKAIADLAHSYLTDPLKVEVTPPG--KAADKVEQYVHFVAG--KND 232
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KT L KKS + ++P + IVF K
Sbjct: 233 KTE----LLKKS-----LNENPDGRAIVFLRTK 256
>gi|343505019|ref|ZP_08742670.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
gi|342809229|gb|EGU44351.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
Length = 398
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 142/275 (51%), Gaps = 29/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S + ++L + + +P+ IQ A P +++G+ + A Q+G+GKT +++LP++++
Sbjct: 3 FSKLGLSQPITDALNQLGYNKPTSIQNKAIPEILKGQDLLAAAQTGTGKTASFVLPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E Q + R +IL PT ELA QV R + +P S+ + GG +K Q
Sbjct: 63 LSKGETQRKKRI-----RALILTPTRELACQVEEKVRDYGQH-LPLTSLAMYGGVDEKPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVD+L+ATPGR + L + + + +LDE D + D F + ++
Sbjct: 117 KQALIEGVDILVATPGRLLDLYGKHAVHFDEVEMLVLDEADRML-DMGFIEDINKILDRL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q+L +ATL NK+ E+ V P F + + +Q S K+
Sbjct: 176 PTDIQHLLFSATLS----NKVRELAKTA--VYNP-----------FEISIAANQASKKSI 218
Query: 510 ETAFL----NKKSALL-QLIEKSPVSKTIVFCNKK 539
E + +KKSALL LI+++ +T++F K
Sbjct: 219 EQWLIAVDKDKKSALLSHLIKENDWDQTLIFIETK 253
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 34/280 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G S ++ +L Q + P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 18 FEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L + S S SP R +IL PT ELA QV N ++ + P RS VV GG
Sbjct: 78 LLA------NASNSASPARHPVRALILTPTRELADQVAENVKAYCRH-TPLRSTVVFGGM 130
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ L L + ++DE D + D F LQ
Sbjct: 131 DMAPQTAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRML-DMGFLPDLQR 189
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F D V + +Q
Sbjct: 190 IINLLPKKRQNLMFSATFSGEI-KKLASSFLDNPVTIEV---------------ARSNQT 233
Query: 505 SDKTPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
+D+ + + K+ + LI + + +VF N K
Sbjct: 234 ADRVTQVVYKVDSDDAKRDIVAHLIRGRQLKQVLVFSNTK 273
>gi|182413406|ref|YP_001818472.1| DEAD/DEAH box helicase [Opitutus terrae PB90-1]
gi|177840620|gb|ACB74872.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 403
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 34/276 (12%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG D + ++++ +++ P+ IQA A P V++G I + Q+G+GKT A+ LP+IQ
Sbjct: 4 AFSKLGLQDALAYAVQKMDYVEPTPIQAQAIPIVLKGGDVIGSAQTGTGKTAAFALPIIQ 63
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ST G R +IL PT ELA QV +K R +V GG
Sbjct: 64 RL----------STHGRLRCLILEPTRELALQVEEAFHKFAKF-TDLRVTIVYGGVGYGK 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L+ G+D+L ATPGR + + +G L ++ +LDEVD + D F ++ ++
Sbjct: 113 QTSDLKRGMDILAATPGRLLDHLGQGNCSLEDVEILVLDEVDRML-DMGFLPDVRKIVQR 171
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP P+ + + G +H + V+ + +T
Sbjct: 172 CPKARQTLFFSATLP-----------PELEQLAGWALHNPTK------VEIGRVRSPAET 214
Query: 509 PETAFL----NKKSALLQ-LIEKSPVSKTIVFCNKK 539
F ++K LLQ L+E++ ++FC +
Sbjct: 215 VSHGFYPVVASQKFDLLQLLLERTEFKSVLIFCRTR 250
>gi|298293432|ref|YP_003695371.1| DEAD/DEAH box helicase [Starkeya novella DSM 506]
gi|296929943|gb|ADH90752.1| DEAD/DEAH box helicase domain protein [Starkeya novella DSM 506]
Length = 557
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 140/272 (51%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG ++ ++++L N P+ IQA A P V+ G+ + Q+G+GKT A+ LP++
Sbjct: 8 TFPELGLAEPILKALAEANHSTPTPIQAQAVPQVLAGRDLVGIAQTGTGKTAAFALPILH 67
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + L+ +S R ++L+PT EL+ Q+L + R K P ++ + GG
Sbjct: 68 HLVTKRLRPERRSA----RALVLSPTRELSGQILESFRLYGKHVRPSTALAI-GGVPIGR 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GVDVL+ATPGR + L++ ++L + +LDE D + D F A++S+++
Sbjct: 123 QARSLAGGVDVLVATPGRLVDLLENNAVRLDMVEVFVLDEADQML-DMGFIHAIRSIVAR 181
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P + LF +AT+P EI + D +V + P V + D+ K
Sbjct: 182 LPHKRRNLFFSATMPREIEKLADTLLSDPVRVAVTP-------------VAKTADKIEQK 228
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T K + L++++ + + + +VF K
Sbjct: 229 VFFTDRAGKPNLLVEVLGEPTLDRALVFSRTK 260
>gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 401
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 144/277 (51%), Gaps = 30/277 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL ++ +++ Q++ +P+ IQA A P ++ K + +G+GKT A++LP +Q
Sbjct: 2 TFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTGKTAAFVLPALQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQK 387
L + S PRV+ILAPT ELA Q+ + L + C PF S VVTGGF
Sbjct: 62 FLLDD------PRPSRKPRVLILAPTRELAFQIHKVVKQLGAHC--PFESNVVTGGFASD 113
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
QLE LQ +D+L+ATPGR + ++ + + L ++ I+DE D + + L +LI
Sbjct: 114 KQLEILQSKIDILVATPGRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVL-ALIE 172
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+ P Q +ATL K E +V+ P + +++ + +++S++
Sbjct: 173 AIPGDFQAACFSATLAGSGITKFAE-----EVLDSPEIIQVN----------APNEKSEQ 217
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
+ +L +KK+ L ++E IVFCNKK
Sbjct: 218 IQQWVYLANDKAHKKALLKAILEDETCQSAIVFCNKK 254
>gi|115471651|ref|NP_001059424.1| Os07g0301200 [Oryza sativa Japonica Group]
gi|75325214|sp|Q6YS30.1|RH5_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 5
gi|34394349|dbj|BAC84904.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|113610960|dbj|BAF21338.1| Os07g0301200 [Oryza sativa Japonica Group]
Length = 512
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 12/230 (5%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K SAD + SF +++ K F RPS IQA A+P +++G+ I +GS
Sbjct: 83 KGSADAKYAPLSSFAATALPPQVLDCCK--GFERPSPIQAYAWPYLLDGRDFIGIAATGS 140
Query: 317 GKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN-CRSLSKCGVPF 375
GKT+A+ +P + +R++ G + G PRV++L+PT ELA Q+ C + + CG+
Sbjct: 141 GKTIAFGVPALMHVRRK--MGEKSAKKGVPRVLVLSPTRELAQQIADVLCEAGAPCGIS- 197
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
S+ + GG + Q+ L+ GVD++I TPGR LI+ GI +L ++ +LDE D + D
Sbjct: 198 -SVCLYGGTSKGPQISALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRML-D 255
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD---CKVVMG 482
FE +++++S + Q + +AT P ++ +L + F D KVV+G
Sbjct: 256 MGFEPEVRAILSQTASVRQTVMFSATWPPAVH-QLAQEFMDPNPIKVVIG 304
>gi|323338349|gb|EGA79576.1| Dbp10p [Saccharomyces cerevisiae Vin13]
Length = 581
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 137/265 (51%), Gaps = 19/265 (7%)
Query: 243 NLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV 302
N + + K +HK + SF G S ++ ++KR+ F +P+ IQ P +
Sbjct: 25 NEYFSTNNLEKTKHK---------KGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLI 75
Query: 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362
++ + + ++GSGKT A++LP++++L+ S S R VIL+P+ ELA Q
Sbjct: 76 LQSRDIVGMARTGSGKTAAFILPMVEKLK-------SHSGKIGARAVILSPSRELAMQTF 128
Query: 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422
+ + ++ G RS+++TGG + Q + DV+IATPGRF+ L E L L ++
Sbjct: 129 NVFKDFAR-GTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHLKVEMNLDLKSVE 187
Query: 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
+ DE D LF + F+ L L++S P T Q L +ATLP + + + + +V
Sbjct: 188 YVVFDEADRLF-EMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRL 246
Query: 483 PGMHRISPGLEE-FLVDCSGDQESD 506
++S LE FL + D+E++
Sbjct: 247 DAETKVSENLEMLFLSSKNADREAN 271
>gi|402569948|ref|YP_006619292.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402251145|gb|AFQ51598.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
Length = 481
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIEPLLRNLQDLNYQVPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELDAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
PV Q L +AT +I
Sbjct: 176 LPVQRQTLLFSATFTDDI 193
>gi|167754851|ref|ZP_02426978.1| hypothetical protein CLORAM_00355 [Clostridium ramosum DSM 1402]
gi|365829799|ref|ZP_09371390.1| hypothetical protein HMPREF1021_00154 [Coprobacillus sp. 3_3_56FAA]
gi|374626591|ref|ZP_09699003.1| hypothetical protein HMPREF0978_02323 [Coprobacillus sp.
8_2_54BFAA]
gi|167704901|gb|EDS19480.1| DEAD/DEAH box helicase [Clostridium ramosum DSM 1402]
gi|365264380|gb|EHM94189.1| hypothetical protein HMPREF1021_00154 [Coprobacillus sp. 3_3_56FAA]
gi|373914119|gb|EHQ45952.1| hypothetical protein HMPREF0978_02323 [Coprobacillus sp.
8_2_54BFAA]
Length = 436
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 25/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + ++ ++K + PS IQ A P ++ G+ ++G+GKT A+ LP++Q+
Sbjct: 3 FSELELIEPLLNAVKEMKYDIPSPIQEQAIPAIISGRDIFGCAKTGTGKTAAFALPILQK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ S+ + + +ILAPT ELA Q+ +++ V +S V+ GG RQ +Q
Sbjct: 63 LY---LRDESEKYPRTIKALILAPTRELAIQINETFEAMNP-QVNLKSAVIFGGVRQGSQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + G+DVLIATPGR + L +G++ L ++ +LDE D + D F ++ ++
Sbjct: 119 VTKINRGIDVLIATPGRLIDLYNQGLVDLKHVEYLVLDEADRML-DMGFIKDIRKILRFI 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPG---MHRISPGLEEFLVDCSGDQES 505
P Q + +ATLP EI + + ++ D K+++ G + +I+ L + VD
Sbjct: 178 PRRHQTMLFSATLPDEIKHLVSDLLNDPLKIMISSGNVTVEKINQSL--YFVDK------ 229
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+NK L++L+E + IVF K
Sbjct: 230 --------VNKAKLLIKLLENPQIYNAIVFVRTK 255
>gi|389576917|ref|ZP_10166945.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
gi|389312402|gb|EIM57335.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
Length = 524
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 22/270 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL + ++ + + + IQ P ++EG+ I Q+G+GKT A+ LP++++
Sbjct: 3 FQELDLKQELQNAVVKAGYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPILEK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E++ L R ++L PT ELA Q+ N + + +P R++ + GG +QK Q
Sbjct: 63 LDNGEVRKL--------RSLVLTPTRELAVQIFENFKKYGRY-LPLRAVCIYGGAKQKPQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ G D+L+AT GR M + G++ L + +LDE D + D F ++ + S
Sbjct: 114 MEALRRGCDILVATLGRLMDYMNLGLVSLKGIEIFVLDEADRML-DMGFINDVRKIAGSM 172
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT+P EI E+ D P R++P + D K
Sbjct: 173 NTDRQTLMFSATMPKEIEQLGRELLRD------PADVRVAP------QSTAADTVDQKIC 220
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K L +++++ V++TI+F K
Sbjct: 221 FVGHSDKLKVLAEILKQEEVTRTIIFTRTK 250
>gi|124026185|ref|YP_001015301.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. NATL1A]
gi|123961253|gb|ABM76036.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
NATL1A]
Length = 589
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 16/204 (7%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S F E S+ +I+++ + + P+ IQ A P ++ G+ + Q+G+GKT A+ LP
Sbjct: 34 SENGFSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALP 93
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+++RL K G P+V++LAPT ELA QV + R+ S F+ + + GG
Sbjct: 94 ILERL---------KKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSD 144
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVAL 442
+ Q+ L+ GVDV++ TPGR M +++ L +L C +LDE D + +D E L
Sbjct: 145 FRNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWIL 204
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ L P Q + +AT+P EI
Sbjct: 205 EQL----PEERQLVLFSATMPSEI 224
>gi|443725222|gb|ELU12902.1| hypothetical protein CAPTEDRAFT_112901 [Capitella teleta]
Length = 515
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 22/256 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++E L + +P+ +Q A P ++ G + I A ++GSGKTLA+LLP++
Sbjct: 110 SFSDLGIHPELVEQLTKFKINQPTNVQQKAIPEILSGYNVICAAETGSGKTLAFLLPMLH 169
Query: 329 R-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
R L ++ + S++ +P +IL P+ ELA Q+ R L G+ +VTGG +
Sbjct: 170 RILELKKTKFFSETPPNTPHGLILTPSRELADQIHGVTRDLCHEGINIHPHLVTGGRGTQ 229
Query: 388 TQLE-NLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
L+ Q +DVLI TPG L+ G++ L+ +LDE D L D+ F + SLI
Sbjct: 230 NILKWKPQSAMDVLITTPGICTKLLTNGLVNPSLLQTLVLDEADTLL-DDSFSTLVLSLI 288
Query: 447 ----------------SSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRI 488
SSS V Q V+AT+P ++ L ++ P K+V +HRI
Sbjct: 289 KRLRISSEKPLNPSAESSSVVGTQVALVSATMPRDLQKILADIVPFDSMKLVQTNHLHRI 348
Query: 489 SPGL-EEFLVDCSGDQ 503
P + ++F+ +GD+
Sbjct: 349 MPHVSQKFMRLKAGDK 364
>gi|359778425|ref|ZP_09281694.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359304342|dbj|GAB15523.1| putative ATP-dependent RNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 559
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 3/200 (1%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
+ KSF + ++ESL P IQAM P + G I ++G+GKTL + +
Sbjct: 34 IAEKSFADFDVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGI 93
Query: 325 PVIQRLRQEELQGLSKSTS-GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
PV+QR+ + G K S G+P+ +++ PT ELA QV ++ ++ S+ R + GG
Sbjct: 94 PVLQRVVGRDDAGFDKLPSPGAPQAMVIVPTRELAVQVANDLQTASRK-RNVRIATIYGG 152
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q++ LQ+GV+V++ TPGR + L K+ L L N++ +LDE D + D F ++
Sbjct: 153 RAYEPQIDALQKGVEVVVGTPGRLIDLYKQKHLVLKNVKIVVLDEADEML-DLGFLPDVE 211
Query: 444 SLISSSPVTAQYLFVTATLP 463
+LI+ +P Q L +AT+P
Sbjct: 212 TLIAGTPAVRQTLLFSATMP 231
>gi|256821642|ref|YP_003145605.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256795181|gb|ACV25837.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 598
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 11/206 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++S+K+ + +PS IQ+ + P ++ GK I Q+G+GKT A+ LP++
Sbjct: 9 SFDELGLSPAVLKSIKQVGYEQPSPIQSASIPVLMAGKDIIGQAQTGTGKTAAFALPMLS 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + + ++++LAPT ELA QV C+S +K + + GG +
Sbjct: 69 RL---------DAKDNNTQLLVLAPTRELAIQVAEACQSYAKNMPGLNVLPIYGGQKYDI 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G +++ TPGR M I+ G L+L NL+ +LDE D + F ++ ++
Sbjct: 120 QLRQLKRGAQIVVGTPGRVMDHIRRGTLKLDNLKALVLDEADEMLR-MGFIDDVEWVLGH 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVF 474
+P T Q +AT+P EI K+ E +
Sbjct: 179 TPKTRQIALFSATMPKEI-KKVAEKY 203
>gi|387904228|ref|YP_006334566.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387579120|gb|AFJ87835.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 483
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRTLQDLNYQTPTPVQANAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 62 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q + +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVETLVLDEADRML-DLGFARELNAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPARRQTLLFSATFTDDI 193
>gi|72382486|ref|YP_291841.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Prochlorococcus marinus str. NATL2A]
gi|72002336|gb|AAZ58138.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str.
NATL2A]
Length = 589
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 16/204 (7%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S F E S+ +I+++ + + P+ IQ A P ++ G+ + Q+G+GKT A+ LP
Sbjct: 34 SENGFSEFNFSEELIQTISDKGYSSPTPIQKAAIPELLLGRDLVGQAQTGTGKTAAFALP 93
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+++RL K G P+V++LAPT ELA QV + R+ S F+ + + GG
Sbjct: 94 ILERL---------KKNVGHPQVLVLAPTRELAMQVAESFRTYSAGHPHFKVLAIYGGSD 144
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVAL 442
+ Q+ L+ GVDV++ TPGR M +++ L +L C +LDE D + +D E L
Sbjct: 145 FRNQINTLRRGVDVVVGTPGRVMDHMRQKTLNTSHLSCLVLDEADEMLRMGFIDDVEWIL 204
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ L P Q + +AT+P EI
Sbjct: 205 EQL----PEERQLVLFSATMPSEI 224
>gi|326491859|dbj|BAJ98154.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 786
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 141/265 (53%), Gaps = 18/265 (6%)
Query: 225 EKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLK 284
+K TK+ + S +QY + + + +F + FKE +
Sbjct: 325 KKEETKVKTSSSATASAETVQYREQNNVTYEDIHRGE-EFAPVRDFKEASTIFPSVIMKV 383
Query: 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSK--ST 342
+ F +P+ IQA ++P G+ I ++GSGKTL++ LP++ ++ LSK ST
Sbjct: 384 TEKFTKPTPIQAQSWPIARSGRDIIAIAETGSGKTLSFGLPILAQI-------LSKQNST 436
Query: 343 SG---SPRVVILAPTAELASQVLSNCRSL-SKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
SG +P +++LAPT ELA Q C + + CG +++ V GG ++ ++ L+ GVD
Sbjct: 437 SGGKRTPLMLVLAPTRELAMQTADVCEAAGATCG--LKTLCVYGGSPREGNVKALKAGVD 494
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
+LIATPGR + L++EG+ L ++ +LDE D + D FE A++ +I++ P T Q L
Sbjct: 495 LLIATPGRLIDLLQEGVAVLDKVQHLVLDEADRML-DMGFEPAIRQIIAAVPKTRQTLMF 553
Query: 459 TATLPVEIYNKLVEVFPD-CKVVMG 482
+AT P+ I + E + KV +G
Sbjct: 554 SATWPLSIQSLANEFLREPAKVTIG 578
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 136/275 (49%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F L ++ ++ +L + IQA A P V+ G+ + A Q+G+GKT A+ LP++Q+
Sbjct: 21 FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQK 80
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+ + E S+S SP R ++LAPT ELA QV +N ++ SK R+ VV GG
Sbjct: 81 MLKHE------SSSTSPARHPVRALVLAPTRELADQVANNVKTYSKH-TQLRATVVFGGI 133
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
K Q L+ GV+VLIATPGR + I+ L + +LDE D + D F LQ
Sbjct: 134 DMKPQTAELKRGVEVLIATPGRLLDHIEAKNCSLSQVEYVVLDEADRML-DIGFLPDLQR 192
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++S P + Q L +AT EI D +V + + +E+ D
Sbjct: 193 ILSYLPKSRQTLLFSATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFYRVEDD-- 250
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K++A+ QL+ ++++IVF N K
Sbjct: 251 ----------DKRNAVKQLLRTRAITQSIVFVNSK 275
>gi|411009458|ref|ZP_11385787.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 459
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 19/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++Q
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGRRQV-----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ G+D+L+ATPGR + L+ +G L L L +LDE D + D F ++ ++ +
Sbjct: 116 NLDAIKLGIDILVATPGRLLDLLTQGALTLTELEVLVLDEADRML-DMGFIHDIRRIMKA 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I ++ D P + + P + + +Q + +
Sbjct: 175 LPTERQTLLFSATFSDDIKALADDLLSD------PTLIEVDPS------NTAAEQVTQRI 222
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 223 IQVDRERRRELLSHMIGRGNWQRVLVFVRTK 253
>gi|349609420|ref|ZP_08888815.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
gi|348611981|gb|EGY61609.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
Length = 457
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PTDRQTLLFSAT 190
>gi|440227497|ref|YP_007334588.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
gi|440039008|gb|AGB72042.1| ATP-dependent RNA helicase protein [Rhizobium tropici CIAT 899]
Length = 548
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 135/272 (49%), Gaps = 21/272 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L + NF P+ IQA A P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 4 FHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E + + + R +ILAPT EL +Q+ N R + ++VV G K Q
Sbjct: 64 LLKEA----KRPDNRTVRTLILAPTRELVNQIADNLRLFMRKTQLRINLVVGGASINKQQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ L+ G D+L+ATPGR + LI L L ++ +LDE D + D F L+ +
Sbjct: 120 LQ-LERGTDILVATPGRLLDLINRRALSLGHVTHLVLDEADQML-DLGFIHDLRKIAKMV 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + + + KV + P PG + D+
Sbjct: 178 PAKRQTLLFSATMPKAIGDLASDYLTNPVKVEVSP------PG-------KAADKVEQYV 224
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
A N K+ +L + I +P + IVF K
Sbjct: 225 HFVAGQNHKTEILKETISANPDGRAIVFLRTK 256
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 13/203 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 2 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N K RS VV GG
Sbjct: 62 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYGKY-TALRSAVVFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++L+ATPGR + +++ + L +R +LDE D + D F LQ
Sbjct: 115 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRML-DMGFLPDLQ 173
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 174 RIINLLPAHRQTLLFSATFSPEI 196
>gi|320451062|ref|YP_004203158.1| DEAD/DEAH box helicase [Thermus scotoductus SA-01]
gi|320151231|gb|ADW22609.1| DEAD-box ATP-dependent RNA helicase [Thermus scotoductus SA-01]
Length = 521
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 11/212 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+ D + E+L R+ P+ IQA A P +EGK I ++G+GKTLA+ LP+ Q
Sbjct: 3 FKDFPLKDEIKEALLRRGITAPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAQG 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L SK PR ++L PT ELA QV ++++ + + V GG Q
Sbjct: 63 LEA------SKERGRLPRALVLTPTRELALQVSGELQAVAPH---LKVVTVYGGTGYGKQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L G DV++ATPGR + +++G L L +R A+LDE D + + FE +++++S++
Sbjct: 114 KEELTRGCDVVVATPGRALDYLRQGALDLSQVRIAVLDEADEMLS-MGFEEEVEAILSAT 172
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481
P Q L +ATLP KL E + VV+
Sbjct: 173 PKERQTLLFSATLP-SWARKLAERYMKSPVVI 203
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 105/203 (51%), Gaps = 13/203 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 16 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N K RS VV GG
Sbjct: 76 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYGKY-TALRSAVVFGG 128
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++L+ATPGR + +++ + L +R +LDE D + D F LQ
Sbjct: 129 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRML-DMGFLPDLQ 187
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 188 RIINLLPAHRQTLLFSATFSPEI 210
>gi|402773718|ref|YP_006593255.1| DEAD/DEAH box helicase [Methylocystis sp. SC2]
gi|401775738|emb|CCJ08604.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. SC2]
Length = 514
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 134/278 (48%), Gaps = 32/278 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ELG S ++ +++ + P+ IQA A PP ++G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFEELGLSQKVLAAVQTSGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPMLS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL ++ + PR +IL PT ELA+QV + S +K G R V + GG
Sbjct: 62 RLES------GRARARMPRTLILEPTRELAAQVEA---SFAKYGKNHRLNVALLIGGVAF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + G DVLIATPGR + G L L + ++DE D + D F ++ +
Sbjct: 113 GEQETKIMRGADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADRML-DMGFIPDIERVC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD----CKVVMGPGMHRISPGLEEFLVDCSGD 502
P T Q LF +AT+P EI +L E F C+V + + + LV G
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-TRLTEAFLHNPIRCEVSRAA---TTATTIRQALVASRGH 227
Query: 503 QESDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKK 539
+K+ L LI E I+FCN+K
Sbjct: 228 A-----------DKRETLRTLIREAENFKNAIIFCNRK 254
>gi|307202009|gb|EFN81574.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
Length = 724
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 20/275 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +++Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 108 QAFEESNFPDYVMEEIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 167
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + LS+ P V+ILAPT ELA Q+ + R S C R+ + GG
Sbjct: 168 VHINHQPR--LSRGD--GPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFGGSP 220
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 221 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 279
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
I Q L +AT P E+ + D ++ +G + + + + C QE
Sbjct: 280 IEQIRPDRQVLMWSATWPKEVQALAEDFLTDYIQINIGSLTLAANHNIRQIVEIC---QE 336
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K ET K S LL+ I SK I+F K
Sbjct: 337 HEK--ET----KLSQLLREIGTERGSKMIIFVETK 365
>gi|453074823|ref|ZP_21977613.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
gi|452763772|gb|EME22047.1| ATP-dependent RNA helicase [Rhodococcus triatomae BKS 15-14]
Length = 433
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 114/210 (54%), Gaps = 9/210 (4%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
S SF ELG + +SL+R+N P IQ + P ++ G+ + +GSGKTLA+ L
Sbjct: 1 MSTPSFTELGLPATLAQSLRRENVTAPFPIQVLVVPDILAGRDVLGRGPTGSGKTLAFGL 60
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P++ RL + S G PR ++LAPT ELA+Q+ S + R TGG
Sbjct: 61 PMLVRLTGK------FSAPGRPRGLVLAPTRELATQI-ERALDESALALGLRLASATGGV 113
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
KTQ + L GVDVL+ATPGR LI +G L L ++ +DE D + F + +
Sbjct: 114 PTKTQAQRLARGVDVLVATPGRAADLIAQGALDLGDVAVTAVDEADHMAQ-IGFLPQVTA 172
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVF 474
++ ++P +AQ L +ATL E+ ++LV +
Sbjct: 173 ILDATPESAQRLLFSATLDGEV-DELVRRY 201
>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
Length = 457
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PTDRQTLLFSAT 190
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 13/203 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G ++ +L + RP+ IQA A P VV G+ + A Q+G+GKT + LP+IQ
Sbjct: 87 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 146
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L E +TS SP R +IL PT ELA QV N +K RS VV GG
Sbjct: 147 NLLPE------ANTSASPARHPVRALILTPTRELADQVYDNVAKYAKY-TALRSAVVFGG 199
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q E L+ GV++L+ATPGR + +++ + L +R +LDE D + D F LQ
Sbjct: 200 VDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADRML-DMGFLPDLQ 258
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 259 RIINLLPAHRQTLLFSATFSPEI 281
>gi|23011993|ref|ZP_00052190.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 551
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 10/199 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G ++ ++ +L ++ P+ IQ A PP +EG+ Q+G+GKT A+ LP++ R
Sbjct: 42 FTDFGLAEPILRALGEAGYVSPTPIQTQALPPAMEGRDLCGIAQTGTGKTAAFALPILHR 101
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L E + + RV++L+PT ELASQ+ S S G +P+ S VV GG
Sbjct: 102 LSLENRRAPRRGC----RVLVLSPTRELASQI---AESFSDYGRHLPYTSTVVFGGVNIS 154
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + GVD+L+ATPGR + L+ L L + +LDE D + D F AL+ ++
Sbjct: 155 RQERAIAPGVDILVATPGRLIDLVDRRALTLEGVEILVLDEADQML-DLGFIHALKRIVK 213
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P I
Sbjct: 214 MLPARRQSLFFSATMPKNI 232
>gi|261210866|ref|ZP_05925156.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
gi|260839841|gb|EEX66441.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
Length = 435
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 7/193 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + ++ + + P+QIQ A P +++G+ I A Q+G+GKT +++LP++++
Sbjct: 40 FSQLGLSDVLTHTVAQLGYQTPTQIQTQAIPVILQGRDVIAAAQTGTGKTASFVLPILEK 99
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV K + + V GG ++ Q
Sbjct: 100 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGKA-TGLKGLAVFGGVDEQAQ 153
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L EGVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 154 KQRLIEGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDCL 212
Query: 450 PVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 213 PNEVQFLLFSATL 225
>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
Length = 457
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PTDRQTLLFSAT 190
>gi|444352450|ref|YP_007388594.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
gi|443903280|emb|CCG31054.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes EA1509E]
Length = 446
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QE+ + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTQEQPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPPRRQNLLFSATFSDEI 194
>gi|156977695|ref|YP_001448601.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
gi|156529289|gb|ABU74374.1| hypothetical protein VIBHAR_06483 [Vibrio harveyi ATCC BAA-1116]
Length = 527
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRML-DMGFIRDIRKILELL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKQRQNLLFSATFSNEI 192
>gi|444426590|ref|ZP_21222002.1| hypothetical protein B878_11633 [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444240160|gb|ELU51707.1| hypothetical protein B878_11633 [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 521
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRML-DMGFIRDIRKILELL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKQRQNLLFSATFSNEI 192
>gi|418530871|ref|ZP_13096791.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
gi|371451950|gb|EHN64982.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
Length = 609
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N RS +K + S V+ GG K
Sbjct: 62 RLANGTAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRSYAKY-LDITSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++GVDVL+ATPGR + L +G + L + ILDE D + D F ++ +++
Sbjct: 120 QIARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 179 VPKDKQSLLFSATFSDEI 196
>gi|449052728|ref|ZP_21732359.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
gi|448875863|gb|EMB10868.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae hvKP1]
Length = 451
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPARRQNLLFSATFSDEI 194
>gi|152969387|ref|YP_001334496.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|365139153|ref|ZP_09345663.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|378977819|ref|YP_005225960.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033962|ref|YP_005953875.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|419974710|ref|ZP_14490127.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977806|ref|ZP_14493104.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987058|ref|ZP_14502183.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991473|ref|ZP_14506438.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997938|ref|ZP_14512730.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003806|ref|ZP_14518449.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006904|ref|ZP_14521400.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012540|ref|ZP_14526853.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020791|ref|ZP_14534976.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024066|ref|ZP_14538080.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031055|ref|ZP_14544878.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420038792|ref|ZP_14552435.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041896|ref|ZP_14555391.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046990|ref|ZP_14560308.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056136|ref|ZP_14569296.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061472|ref|ZP_14574460.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064158|ref|ZP_14576968.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069526|ref|ZP_14582181.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078157|ref|ZP_14590617.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420084520|ref|ZP_14596776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|424829756|ref|ZP_18254484.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424934331|ref|ZP_18352703.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077527|ref|ZP_18480630.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425088160|ref|ZP_18491253.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090700|ref|ZP_18493785.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428940153|ref|ZP_19013245.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
gi|150954236|gb|ABR76266.1| putative ATP-dependent RNA helicase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339761090|gb|AEJ97310.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae KCTC 2242]
gi|363654512|gb|EHL93410.1| ATP-dependent RNA helicase rhlE [Klebsiella sp. 4_1_44FAA]
gi|364517230|gb|AEW60358.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345127|gb|EJJ38254.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397345977|gb|EJJ39096.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397353346|gb|EJJ46420.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397361555|gb|EJJ54216.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363734|gb|EJJ56371.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397368249|gb|EJJ60856.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381416|gb|EJJ73587.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385751|gb|EJJ77846.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387462|gb|EJJ79487.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399449|gb|EJJ91101.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400795|gb|EJJ92433.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403895|gb|EJJ95434.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417455|gb|EJK08620.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417749|gb|EJK08912.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397420966|gb|EJK12007.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397430627|gb|EJK21316.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433767|gb|EJK24410.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397442774|gb|EJK33116.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397445167|gb|EJK35418.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450132|gb|EJK40246.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|405593236|gb|EKB66688.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405602292|gb|EKB75434.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405613678|gb|EKB86407.1| ATP-dependent RNA helicase rhlE [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808518|gb|EKF79769.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|414707181|emb|CCN28885.1| putative ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426302754|gb|EKV64945.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae VA360]
Length = 451
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPARRQNLLFSATFSDEI 194
>gi|357620336|gb|EHJ72566.1| DEAD box polypeptide 5 [Danaus plexippus]
Length = 592
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 135/275 (49%), Gaps = 18/275 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+ F+E DY+++S+ + P+ IQA +P + GK+ + Q+GSGKTLAY+LP I
Sbjct: 155 QHFEEGNFPDYVMKSISSMGYNEPTPIQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAI 214
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
+ ++ P ++LAPT ELA Q+ R+ V GG ++
Sbjct: 215 VHINNQQ----PVRRGDGPVALVLAPTRELAQQIQQVATDFGNAAY-VRNTCVFGGAPKR 269
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV+++IATPGR + +++G L +LDE D + D FE ++ +I
Sbjct: 270 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRML-DMGFEPQIRKIIE 328
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESD 506
Q L +AT P E+ KL E + V + G ++S +VD + E +
Sbjct: 329 QIRPDRQTLMWSATWPKEV-RKLAEDYLGDYVQINIGSMQLSANHNILQIVDVCQEHEKE 387
Query: 507 KTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKK 539
NK + LLQ I +S P SKTI+F K
Sbjct: 388 --------NKLNTLLQEIGQSQDPGSKTIIFVETK 414
>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
Length = 552
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 138/273 (50%), Gaps = 15/273 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP++
Sbjct: 4 FSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMLS- 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ + PR ++L PT ELA+QV N + SK + ++ GG K Q
Sbjct: 63 -----LLARGRARARMPRSLVLCPTRELAAQVAENFDTYSKH-LKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + + G L L +++ ++DE D + D F ++ + +
Sbjct: 117 EQIIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRML-DMGFIPDIERIFGLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + V S +E+ +V G + +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASETIEQGVVMFKGSRRDREAS 235
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKKS 540
E K++ L +LI E + I+FCN+K+
Sbjct: 236 E-----KRNVLRKLIDAEGDKCTNAIIFCNRKT 263
>gi|373110078|ref|ZP_09524350.1| hypothetical protein HMPREF9712_01943 [Myroides odoratimimus CCUG
10230]
gi|371643613|gb|EHO09162.1| hypothetical protein HMPREF9712_01943 [Myroides odoratimimus CCUG
10230]
Length = 449
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 26/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + + EGVD+L+ TPGR M L +G+L+ NL+ ++DE D + N F L S+++
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQKLVIDEFDEILN-LGFRTQLTSILTM 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q + +AT+ E+ L E FP+ +V + P LE DQ+
Sbjct: 173 MKGKRQNILFSATMTEEVDEVLDEYFDFPE-EVSLAPS----GTPLENI------DQQIY 221
Query: 507 KTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKK 539
P F K + L+ L+ K ++ ++F N K
Sbjct: 222 NVPN--FNTKLNLLMHLLSNKEEFNRVLIFINSK 253
>gi|423131726|ref|ZP_17119401.1| hypothetical protein HMPREF9714_02801 [Myroides odoratimimus CCUG
12901]
gi|371641365|gb|EHO06950.1| hypothetical protein HMPREF9714_02801 [Myroides odoratimimus CCUG
12901]
Length = 448
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 26/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + + EGVD+L+ TPGR M L +G+L+ NL+ ++DE D + N F L S+++
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQKLVIDEFDEILN-LGFRTQLTSILTM 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q + +AT+ E+ L E FP+ +V + P LE DQ+
Sbjct: 173 MKGKRQNILFSATMTEEVDEVLDEYFDFPE-EVSLAPS----GTPLENI------DQQIY 221
Query: 507 KTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKK 539
P F K + L+ L+ K ++ ++F N K
Sbjct: 222 NVPN--FNTKLNLLMHLLSNKEEFNRVLIFINSK 253
>gi|254462976|ref|ZP_05076392.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2083]
gi|206679565|gb|EDZ44052.1| ATP-dependent RNA helicase RhlE [Rhodobacteraceae bacterium
HTCC2083]
Length = 495
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 135/272 (49%), Gaps = 14/272 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L +++++ + P+ IQ A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FSDLNLDPKVLKAIDDAGYESPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++L PT ELA+QV N + +K ++ GG K Q
Sbjct: 64 L------GKGRARARMPRSLVLCPTRELAAQVAENFDTYTKYHKKLSKALLIGGVSFKEQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +GVDVLIATPGR + ++ G L L ++ ++DE D + D F ++ + +
Sbjct: 118 DRLIDKGVDVLIATPGRLLDHVERGKLLLTGVQVMVVDEADRML-DMGFIPDIERIFGLT 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + V S +E+ ++ G ++ +
Sbjct: 177 PFTRQTLFFSATMAPEIERITNTFLSNPARVEVARQATASENIEQVVMMFKGSRKDREGT 236
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
E K+ AL +LI E + I+FCN+K
Sbjct: 237 E-----KRKALRKLIDAEGDACTNAIIFCNRK 263
>gi|345872285|ref|ZP_08824222.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343919163|gb|EGV29916.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 446
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S ++ ++ Q + P+ IQ A P V+ G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFAELGLSAELLRAVDAQGYTHPTPIQLQAIPAVLLGRDVLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G + PR ++L PT ELA+QV + R L +P RS+ + GG
Sbjct: 62 LLNAAQSNGRQR----RPRALVLTPTRELAAQVGESVR-LYGQNLPLRSLQIFGGVGMGP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVD+L+ATPGR + +G + L + +LDE D + D F ++ ++ S
Sbjct: 117 QVDKLRRGVDILVATPGRLLDHQGQGNVDLGGIEILVLDEADRML-DMGFIHDIRRILKS 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 LPKQRQNLLFSATYSREI 193
>gi|146302300|ref|YP_001196891.1| DEAD/DEAH box helicase [Flavobacterium johnsoniae UW101]
gi|146156718|gb|ABQ07572.1| DEAD/DEAH box helicase domain protein [Flavobacterium johnsoniae
UW101]
Length = 415
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 141/270 (52%), Gaps = 17/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++L S + +++ + +L P+ IQ + P V+ G+ I Q+G+GKT A+ +P+I +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEKSIPIVLAGRDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + + G SK + R +I+ PT ELA Q+ + + SK + + GG Q Q
Sbjct: 63 LHR--IVGSSKK-AKQIRALIVTPTRELAVQIGQSFDTYSKY-TNLTQLTIFGGVSQNPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ L+ GVDVL+ATPGR + L K+G L L +L +LDE D + D F ++ ++ +
Sbjct: 119 VDALKNGVDVLVATPGRLLDLHKQGFLDLNHLHTLVLDEADQML-DMGFINDVKKIVKLT 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q L +AT+P+ I +L E+F + P +SP V + + +
Sbjct: 178 PKNRQTLLFSATMPLAI-RELAEMF-----LQDPEKVEVSP------VSSTAENVEQRVY 225
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K++ L +LI++ +S +VF K
Sbjct: 226 FVDKTEKRNLLYRLIKEENLSNVLVFSRTK 255
>gi|255555929|ref|XP_002519000.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223541987|gb|EEF43533.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 534
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 133/230 (57%), Gaps = 12/230 (5%)
Query: 257 KYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGS 316
K + + + + KSF E D +++ Q+F PS IQA A+P +++G+ I ++GS
Sbjct: 105 KDAKEAKYAALKSFSESNLPDNVLKCC--QSFKNPSPIQAHAWPFLLDGRDFIGIAKTGS 162
Query: 317 GKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPF 375
GKTLAY +P + + + +G S + S +P ++LAPT ELA Q+ R + CGV
Sbjct: 163 GKTLAYGIPAVMHVLSKR-KGAS-ANSVNPLCLVLAPTRELADQISVVLRDAGEPCGV-- 218
Query: 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435
RS+ + GG + Q+ +L+ GVD++IATPGR LI+ I L+ + +LDE D + D
Sbjct: 219 RSVCLYGGTSKGPQISSLKSGVDIVIATPGRLKDLIEMNICHLMEVSFLVLDEADRML-D 277
Query: 436 EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD---CKVVMG 482
F ++S++S + Q + +AT P++++N L E + D KVV+G
Sbjct: 278 MGFRQEVRSILSKTCSARQMIMFSATWPLDVHN-LAEEYMDRNPIKVVVG 326
>gi|149180848|ref|ZP_01859350.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
gi|148851367|gb|EDL65515.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein [Bacillus
sp. SG-1]
Length = 496
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 108/200 (54%), Gaps = 14/200 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG S+ +IE L+++N P+ IQ A P V++GK I Q+G+GKTLA++LP+I+
Sbjct: 3 NFKSLGISEAVIERLQKENVTTPTPIQEKAIPAVIKGKDVIAQAQTGTGKTLAFILPIIE 62
Query: 329 R--LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q+ +Q L I+ PT ELA Q+ R L + + V GG
Sbjct: 63 NFDFNQQSIQAL-----------IVTPTRELALQITEEVRKLIRHIEGISVLPVYGGQDV 111
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ QL L++ V +++ TPGR + I G + L L +LDE D + + F ++ +I
Sbjct: 112 EKQLNKLRKNVGIVVGTPGRILDHIGRGTIDLSELNSLVLDEADQMLHI-GFLKEVEMII 170
Query: 447 SSSPVTAQYLFVTATLPVEI 466
+P T Q L +AT+P EI
Sbjct: 171 RETPKTRQTLLFSATIPDEI 190
>gi|406900287|gb|EKD43303.1| hypothetical protein ACD_72C00354G0001, partial [uncultured
bacterium]
Length = 345
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 113/197 (57%), Gaps = 13/197 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG + ++E+L+ F P+ IQ + P +EGK + Q+G+GKTLA+ +P++QR
Sbjct: 17 FQSLGIAPRILETLEHLKFTTPTPIQHQSIPAALEGKDVVGIAQTGTGKTLAFGIPMVQR 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + QGL IL PT ELA QV S+++ ++ V+ GG Q
Sbjct: 77 LSNGQGQGL-----------ILLPTRELALQVAETLTSITRNN-GLKTAVLIGGASMFMQ 124
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+++L+ +++ATPGR + IK+G L+L N+R A+LDE D +F D F ++ ++S
Sbjct: 125 VQSLRRNPSIIVATPGRLVDHIKQGNLRLNNIRIAVLDEADRMF-DIGFAPQIKQVLSLI 183
Query: 450 PVTAQYLFVTATLPVEI 466
P Q + +AT+P EI
Sbjct: 184 PKQRQIMLFSATMPPEI 200
>gi|423328147|ref|ZP_17305955.1| hypothetical protein HMPREF9711_01529 [Myroides odoratimimus CCUG
3837]
gi|404605297|gb|EKB04899.1| hypothetical protein HMPREF9711_01529 [Myroides odoratimimus CCUG
3837]
Length = 448
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 26/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + + EGVD+L+ TPGR M L +G+L+ NL+ ++DE D + N F L S+++
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQKLVIDEFDEILN-LGFRTQLTSILTM 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q + +AT+ E+ L E FP+ +V + P LE DQ+
Sbjct: 173 MKGKRQNILFSATMTEEVDEVLDEYFDFPE-EVSLAPS----GTPLENI------DQQIY 221
Query: 507 KTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKK 539
P F K + L+ L+ K ++ ++F N K
Sbjct: 222 NVPN--FNTKLNLLMHLLSNKEEFNRVLIFINSK 253
>gi|251780900|ref|ZP_04823820.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243085215|gb|EES51105.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 432
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L + + ++L + P+ IQ + P ++EGK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + + S + + +ILAPT ELA Q+ N SK ++ V+ GG QK Q
Sbjct: 63 IAKNQNKS---DKSRTIKALILAPTRELAIQIEENFTLYSKH-TNIKNTVIFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L EGVD+LIATPGR + LI + + L N++ +LDE D +F D ++ +++
Sbjct: 119 TRILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMF-DMGMVRDVKKIVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P E+ + + + D KV + P V + D +
Sbjct: 178 PKVRQNLLFSATMPSEVKSLVNSILKDPVKVEVAP-------------VSSTIDTITQGV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+KKS L+ L++ + +VF K
Sbjct: 225 YFVTKKDKKSLLVHLLKDESIKSLLVFSRTK 255
>gi|375130530|ref|YP_004992630.1| hypothetical protein [Vibrio furnissii NCTC 11218]
gi|315179704|gb|ADT86618.1| hypothetical protein vfu_A01441 [Vibrio furnissii NCTC 11218]
Length = 536
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S +++++K + + PS IQA A P V++GK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G + + R +IL PT ELA+QV + S+ +P S VV GG + Q
Sbjct: 63 -----LTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRML-DMGFIRDIRKILELL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKNRQNLLFSATFSDEI 192
>gi|296116253|ref|ZP_06834870.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295977187|gb|EFG83948.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 431
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 136/271 (50%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA A P +++G+ + Q+G+GKT A+ LP++
Sbjct: 3 TFADLHLAEPLLRALNEEGYTTPTPIQAGAIPYLLQGRDLLGLAQTGTGKTAAFALPILN 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L L ++ R ++LAPT ELASQ+ + S ++ + F VV GG Q
Sbjct: 63 HL----LTSKGRAHPKGARALVLAPTRELASQIADSFASYARH-MKFTHAVVFGGVGQGR 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+E L+ GVDVL+A PGR + L+ +G + L L +LDE D + D F ++ ++++
Sbjct: 118 QIEALRRGVDVLVAAPGRLLDLMGQGHVDLAGLEILVLDEADRML-DMGFVRDIRKIVAT 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + D P +++P + D+
Sbjct: 177 LPTDRQTLLFSATMPKSISELAHGLLRD------PATVQVTPP------SSTVDRIRQAV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ AL L++ V + +VF K
Sbjct: 225 MYVDTGNKREALKLLVDSPKVERAVVFTLMK 255
>gi|258621511|ref|ZP_05716544.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
gi|424810184|ref|ZP_18235547.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus SX-4]
gi|258586129|gb|EEW10845.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus VM573]
gi|342322555|gb|EGU18344.1| ATP-dependent RNA helicase RhlE [Vibrio mimicus SX-4]
Length = 412
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 7/193 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG SD + +++ R + P+ IQ A P +++G+ I A Q+G+GKT +++LPV+++
Sbjct: 17 FSQLGLSDVLTQTVARLGYQTPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPVLEK 76
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
LRQ + Q + R +IL PT ELA QV + +S+ V GG ++ Q
Sbjct: 77 LRQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGQ-DTGLKSLAVFGGVDEQAQ 130
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVDVL+ATPGR M L + + + +LDE D + D F ++ +I
Sbjct: 131 KQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDCL 189
Query: 450 PVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 190 PSEVQFLLFSATL 202
>gi|423135502|ref|ZP_17123148.1| hypothetical protein HMPREF9715_02923 [Myroides odoratimimus CIP
101113]
gi|371641511|gb|EHO07094.1| hypothetical protein HMPREF9715_02923 [Myroides odoratimimus CIP
101113]
Length = 449
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 26/274 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++ + ++L N + P+ IQA +FP ++ G+ + Q+G+GKT AYLLP+++
Sbjct: 3 TFEQFNLPKALEKALNELNIISPTPIQAKSFPVILSGRDMMGIAQTGTGKTFAYLLPILK 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S + SPRVVIL PT EL QV+ L+ + R++ V GG T
Sbjct: 63 QWKF--------SHAESPRVVILVPTRELVVQVVDEVEKLT-AYMSVRTLGVYGGTNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + + EGVD+L+ TPGR M L +G+L+ NL+ ++DE D + N F L S+++
Sbjct: 114 QRKAVYEGVDILVGTPGRMMDLALDGVLRFDNLQKLVIDEFDEILN-LGFRTQLTSILTM 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q + +AT+ E+ L E FP+ +V + P LE DQ+
Sbjct: 173 MKGKRQNILFSATMTEEVDEVLDEYFDFPE-EVSLAPS----GTPLENI------DQQIY 221
Query: 507 KTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKK 539
P F K + L+ L+ K ++ ++F N K
Sbjct: 222 NVPN--FNTKLNLLMHLLSNKEEFNRVLIFINSK 253
>gi|107103467|ref|ZP_01367385.1| hypothetical protein PaerPA_01004537 [Pseudomonas aeruginosa PACS2]
Length = 449
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|83310527|ref|YP_420791.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82945368|dbj|BAE50232.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 476
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 116/197 (58%), Gaps = 6/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++++L+ + + P+ IQ + P +++G + Q+G+GKT ++ LP++QR
Sbjct: 5 FSELGLAEPLLKALEAEGYTTPTPIQEQSIPHLLQGSDVLGLAQTGTGKTASFALPLLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + + + KS R+++L PT ELA QV + ++ C R +V GG Q
Sbjct: 65 LDQFKKRAMPKSC----RILVLTPTRELAVQVGQSFKTYG-CHYRLRHALVFGGVGMVPQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ + GVDVL+ATPGR + LI++G ++L ++ +LDE D + D F ++ +++
Sbjct: 120 IKTMAGGVDVLVATPGRLLDLIEQGAIRLDSVEALVLDEADRML-DMGFIQPIRKIVALV 178
Query: 450 PVTAQYLFVTATLPVEI 466
P Q + +AT+P I
Sbjct: 179 PKQRQTVLFSATMPDSI 195
>gi|170058665|ref|XP_001865019.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
gi|167877695|gb|EDS41078.1| DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus]
Length = 686
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + G DY++E +Q F +P+ IQA P + G+ + Q+GSGKTLAY+ P +
Sbjct: 117 TFGDCGLPDYILEETVKQGFTKPTAIQAQGMPIAMTGRDMVGIAQTGSGKTLAYVAPALV 176
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ +E + P +ILAPT ELA Q+ + + V GG +
Sbjct: 177 HIQHQE----TVHRGDGPIALILAPTRELAQQIQQVANDFGQR-TNTNNTCVFGGAPKGP 231
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L+ G +++IATPGR + ++ GI L +LDE D + D FE ++ ++
Sbjct: 232 QIRDLERGAEIVIATPGRLIDFLERGITNLRRCTYLVLDEADRML-DMGFEPQIRKIMGQ 290
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + + + G +S +VD D E D+
Sbjct: 291 IRPDRQVLMWSATWPKEVRN-LAEEFLNDYIQINIGSLNLSANHNILQIVDVCEDYEKDQ 349
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K LL I +KTIVF K
Sbjct: 350 --------KLMKLLTEISAEAETKTIVFVETK 373
>gi|406868490|gb|EKD21527.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 939
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 136/292 (46%), Gaps = 36/292 (12%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + G M+ ++K + P+ IQ P V+EG + Q+GSGKT A+L+P++
Sbjct: 204 KSFADAGLHPAMLTNVKLAGYDVPTPIQQFTIPCVIEGHDLVACAQTGSGKTAAFLIPIL 263
Query: 328 QRLRQEELQ-------------GLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
+L + + G++ P V+I+AP+ ELA+Q+ R +
Sbjct: 264 SKLMGKAKKIAAPRPNPVTFQPGITAPVRAEPLVLIVAPSRELATQIFDEARRFCYRTM- 322
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGILQLINLRCAILDEVDILF 433
R VV GG Q++ L G DVLI TPGR F+ + +L L LR ++DE D +
Sbjct: 323 LRPCVVYGGGPLGEQIQQLARGCDVLIGTPGRLCDFINRPNVLTLKRLRYMVIDEADEML 382
Query: 434 NDEDFEVALQSLISSSPV---TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP 490
N D+E+ L+ ++S +YL +AT P K+ + +S
Sbjct: 383 NT-DWELELKQIMSGGDQEEGNIKYLMFSATFP--------------KIAHELALQHLSH 427
Query: 491 GLEEFLVDCSGDQESDKTPETAFLN---KKSALLQLIEKSPVSKTIVFCNKK 539
V +G + + F++ K+ AL L+ +P ++TI+F N K
Sbjct: 428 DHVHIRVGRAGSSHVNIKQDIVFVDAHAKRKALFDLLMSAPPARTIIFVNSK 479
>gi|254443370|ref|ZP_05056846.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
gi|198257678|gb|EDY81986.1| DEAD/DEAH box helicase domain protein [Verrucomicrobiae bacterium
DG1235]
Length = 469
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 132/270 (48%), Gaps = 20/270 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ + + PS IQA A P ++EG+ + Q+G+GKT A+ LP++QR
Sbjct: 3 FATLGLRPEIVSAVTAKGYTEPSPIQAKAIPAILEGRDVLGGAQTGTGKTAAFSLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + E + + PR +ILAPT ELA+QV + K GV S GG Q
Sbjct: 63 LSESEFK------NKRPRALILAPTRELAAQVHQSILDYGK-GVDLHSACFFGGVNINPQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L+ G+D+++ATPGR + L + L + +LDE D + D F ++ ++
Sbjct: 116 ISKLRRGLDIIVATPGRLLDLCQRREANLGAIETLVLDEADRML-DMGFIHDIRKILKLL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT Y K V+ D ++ P ++P + + DQ + +
Sbjct: 175 PHDRQNLFFSAT-----YAKDVKKLADS-ILRNPVEVEVAP------RNSTADQIAQEAY 222
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK+ AL LI+ + +VF K
Sbjct: 223 SIGQKNKREALSNLIKDGDWKQVLVFTRTK 252
>gi|352093852|ref|ZP_08955023.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
gi|351680192|gb|EHA63324.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. WH 8016]
Length = 401
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
M+++L+ + + PS IQ A P V+ G+ + A Q+G+GKT + LP+++RL G
Sbjct: 1 MLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQTGTGKTAGFTLPMLERLNHGARPGR 60
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
++ R ++L PT ELA+QVL++ R SK +P S VV GG + Q++ LQ+GVD
Sbjct: 61 AQI-----RALVLTPTRELAAQVLASVRDYSKH-LPLTSDVVFGGVKINPQIQRLQKGVD 114
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
VL+ATPGR + L+++G ++ + +LDE D + D F ++ +IS P Q L
Sbjct: 115 VLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRML-DMGFIHDIRRVISRLPDRRQTLMF 173
Query: 459 TATLPVEI 466
+AT I
Sbjct: 174 SATFSAPI 181
>gi|334705092|ref|ZP_08520958.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 462
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 135/271 (49%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG S +++ ++K + +P+ IQ A P ++ G+ + Q+G+GKT + LP++
Sbjct: 2 SFNELGLSPHILRAVKELGYEQPTPIQQQAIPAILAGQDVLGGAQTGTGKTAGFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +G + R ++L PT ELA+QV + + +PFR+++ GG K
Sbjct: 62 RLLANHGRGGRRQV----RALVLTPTRELAAQVGESIIKYAHH-LPFRTLIAYGGVSIKP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L+ ++ GVD+L+ATPGR + L+ +G L L L +LDE D + D F ++ ++ +
Sbjct: 117 NLDAIKLGVDILVATPGRLLDLLTQGALTLSALEVLVLDEADRML-DMGFITDIRRIMKA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT +I ++ D P + + P + + +Q S +
Sbjct: 176 LPEERQTLLFSATFSNDIKALADDLLKD------PTLIEVDPS------NTAAEQVSQRI 223
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ ++ L +I + + +VF K
Sbjct: 224 IQVDRERRREMLSHMIGRGNWQRVLVFVRTK 254
>gi|333915443|ref|YP_004489175.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333745643|gb|AEF90820.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 598
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 115/200 (57%), Gaps = 3/200 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + +++++ + + P+ IQA A P V+ G + Q+G+GKT A+ LP++
Sbjct: 2 TFEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q ++ +K R ++L PT ELA+QV + RS +K + S V+ GG K
Sbjct: 62 RLSQGQVP-RNKFGGKGIRALVLTPTRELAAQVEESVRSYAKY-LDINSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ +++GVD+L+ATPGR + L ++G + L + +LDE D + D F ++ +++
Sbjct: 120 QIDRIKKGVDILVATPGRLLDLQQQGFMDLSTVEVLVLDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEIYN 468
P Q L +AT EI +
Sbjct: 179 VPKDKQSLLFSATFSDEIRD 198
>gi|116693760|ref|YP_839293.1| DEAD/DEAH box helicase [Burkholderia cenocepacia HI2424]
gi|116651760|gb|ABK12400.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 507
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 25 SFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 84
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 85 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 139
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 140 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELDAVFAA 198
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 199 LPAKRQTLLFSATFSDEI 216
>gi|326798202|ref|YP_004316021.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
gi|326548966|gb|ADZ77351.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
Length = 419
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFKEL D +++++ ++ + P+ IQ+ A P V+ G+ + Q+G+GK+ A++LP++Q
Sbjct: 2 SFKELKLIDPLLKAIHKEGYETPTPIQSQAIPVVLSGRDLLGCAQTGTGKSAAFILPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L L K+ + ++LAPT ELA Q+ + + + +P + VV GG T
Sbjct: 62 QL--NSLPNKEKAV----KALVLAPTRELAIQINESIATYGQL-LPLKHQVVYGGVNINT 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+D+L+ATPGR + L+ + +L L + +LDE D + D F ++ +++
Sbjct: 115 QISGLKKGIDILVATPGRLLDLVGQRVLTLRAVSHFVLDEADRML-DMGFIHDIKKVVAL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P+ Q LF +AT+P EI
Sbjct: 174 LPIKRQTLFFSATMPPEI 191
>gi|149186749|ref|ZP_01865060.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
gi|148829657|gb|EDL48097.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
Length = 455
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++L + + P+ IQA A PPV+EG+ + Q+G+GKT A++LP I R
Sbjct: 4 FTDLGLSQPVLQALDIKGYTTPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLPSIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
LR + Q KS R++ILAPT ELA Q+ + + G+ S+V GG
Sbjct: 64 LRDADKQSPFKSC----RMLILAPTRELAGQIADSAKDYGALAGLKVHSIV--GGTSVNK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L G D+L+ATPGR + LI + L + ILDE D + D F AL+ +
Sbjct: 118 DRNKLHRGTDILVATPGRLLDLIDQKAFTLDKVEILILDEADQML-DLGFIHALRKISEL 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P +I
Sbjct: 177 VPDDRQTLFFSATMPKQI 194
>gi|402850227|ref|ZP_10898436.1| ATP-dependent RNA helicase [Rhodovulum sp. PH10]
gi|402499526|gb|EJW11229.1| ATP-dependent RNA helicase [Rhodovulum sp. PH10]
Length = 489
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 137/277 (49%), Gaps = 29/277 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ ++ ++K + P+ IQ A P V+ + + Q+G+GKT A++LP++
Sbjct: 2 SFDQLGLSEKVLAAVKSAGYTSPTPIQEQAIPHVLARRDVLGIAQTGTGKTAAFVLPMLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL Q ++ + PR +IL PT ELA+QV S + GV + V + GG
Sbjct: 62 RLEQ------GRARARMPRTLILEPTRELAAQVEE---SFQQLGVNHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L GVDVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 113 GNQDMKLTRGVDVLIATPGRLLDHTERGGLLLTGVELLVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
P T Q LF TAT+P EI ++ E F P V P + + LV C G +
Sbjct: 172 KLVPFTRQTLFFTATMPAEI-RRITEQFLHNPVKVEVARPAT--TVDAITQSLVKC-GRE 227
Query: 504 ESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKK 539
D K+ L +LI + + IVFCN+K
Sbjct: 228 AHD---------KREVLRKLIRSAEGLKNAIVFCNRK 255
>gi|163789736|ref|ZP_02184173.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
gi|159874958|gb|EDP69025.1| hypothetical protein CAT7_05876 [Carnobacterium sp. AT7]
Length = 423
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 112/197 (56%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F EL + +++ +LK + + + IQ A P ++ K + Q+G+GKT A+ LP++Q
Sbjct: 3 FNELELNQHLLHALKEAGYTKATPIQEDAIPHLLNNKDLLGCAQTGTGKTAAFALPILQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ +E+ G G+ + +ILAPT ELA Q+ + ++ +K +P V+ GG Q Q
Sbjct: 63 IMEEKTVG-----KGAIKALILAPTRELAIQIGESFQTYAKY-LPLNIQVIFGGVSQNPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ G D+LIATPGR + LI++G ++L + +LDE D++ D ++ +I
Sbjct: 117 TATLKRGTDILIATPGRLLDLIRQGFVKLNQVEFFVLDEADMML-DMGMLRDVRHIIREL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q +F +AT+P EI
Sbjct: 176 PKKRQSMFFSATMPTEI 192
>gi|386361220|ref|YP_006059465.1| DNA/RNA helicase [Thermus thermophilus JL-18]
gi|383510247|gb|AFH39679.1| DNA/RNA helicase, superfamily II [Thermus thermophilus JL-18]
Length = 510
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 10/194 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+ ++E+L + P+ IQA A P +EGK I ++G+GKTLA+ LP+ +R
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L S+ PR ++LAPT ELA QV S L+ + + V GG Q
Sbjct: 63 L------APSQERGRKPRALVLAPTRELALQVASE---LASVATHLKVVAVYGGTGYGKQ 113
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L G D ++ATPGR + +++G+L L + A+LDE D + + FE +++L+S++
Sbjct: 114 KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS-MGFEEEVEALLSAT 172
Query: 450 PVTAQYLFVTATLP 463
P + Q L +ATLP
Sbjct: 173 PPSRQTLLFSATLP 186
>gi|341615128|ref|ZP_08701997.1| DNA and RNA helicase [Citromicrobium sp. JLT1363]
Length = 460
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 110/198 (55%), Gaps = 8/198 (4%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S ++++L Q + P+ IQA A PPV+EG+ + Q+G+GKT A++LP I R
Sbjct: 4 FSDLGLSQPVLQALDLQGYKEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQKT 388
LR + Q KS R+++LAPT ELA Q+ + + G+ +S+V GG
Sbjct: 64 LRDADNQTPFKSC----RMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIV--GGTSVNK 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
L G D+L+ATPGR + LI + L + +LDE D + D F AL+ +
Sbjct: 118 DRNKLHRGTDILVATPGRLLDLIDQRAFTLDAVEILVLDEADQML-DLGFIHALRKINEL 176
Query: 449 SPVTAQYLFVTATLPVEI 466
+P Q LF +AT+P +I
Sbjct: 177 TPKDRQTLFFSATMPKQI 194
>gi|167761792|ref|ZP_02433919.1| hypothetical protein BACSTE_00133 [Bacteroides stercoris ATCC
43183]
gi|167700298|gb|EDS16877.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 372
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 111/195 (56%), Gaps = 8/195 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+L ++ ++++++ + + P+ IQ A P + GK + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L+ + K+ S + +IL PT ELA Q+ S C R V+ GG Q+
Sbjct: 62 HLQ------VLKNRDKSIKALILTPTRELALQI-SECIDDYAKYTQVRHGVIFGGVNQRA 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L+ +G + L N+R +LDE D + D F ++ L+
Sbjct: 115 QVNMLHKGVDILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRML-DMGFIHDIKRLLPK 173
Query: 449 SPVTAQYLFVTATLP 463
P Q LF +AT+P
Sbjct: 174 LPKEKQTLFFSATMP 188
>gi|313109386|ref|ZP_07795348.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|386068049|ref|YP_005983353.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
gi|310881850|gb|EFQ40444.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 39016]
gi|348036608|dbj|BAK91968.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa NCGM2.S1]
Length = 449
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|421178877|ref|ZP_15636479.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
gi|404547823|gb|EKA56806.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa E2]
Length = 449
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|340777917|ref|ZP_08697860.1| DEAD/DEAH box helicase domain-containing protein [Acetobacter aceti
NBRC 14818]
Length = 432
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L ++ ++ +L + + P+ IQA + P ++ G+ + Q+G+GKT A+ LP++Q
Sbjct: 3 TFADLQLAEPLLRALTEEGYSEPTPIQAQSIPYLLAGRDLLGLAQTGTGKTAAFALPILQ 62
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L L+ + P RV++LAPT ELASQ+ + +S ++ + V+ GG
Sbjct: 63 HL-------LTHRHAAPPKGARVLVLAPTRELASQIDDSFKSYARH-MKLTHTVIFGGVG 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q+E ++ GVDVL+A PGR + L+ +G + L +L +LDE D + D F ++ +
Sbjct: 115 QGRQVEAMRRGVDVLVAAPGRLLDLMGQGFIDLRDLEILVLDEADRML-DMGFVRDIKRI 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+++ P Q L +AT+P I + D KV + P + + + ++ DQ
Sbjct: 174 VAALPRDRQTLLFSATMPNSITELAGSLLRDPAKVEVTPPSSTVD-RIRQVVMFVDPDQ- 231
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK ALL L+E V + +VF K
Sbjct: 232 -----------KKDALLLLLESPKVVRAVVFTLMK 255
>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
PW2]
gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
PW2]
Length = 618
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 141/272 (51%), Gaps = 16/272 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++LG D ++++++ ++ P+ +QA + P V+ + + A Q+G+GKT A+LLP +
Sbjct: 59 FEDLGLPDIILKAVRGLHYTTPTPVQAASIPSVLAKRDILAAAQTGTGKTAAFLLPAMSN 118
Query: 330 LRQEELQGLSKSTSG--SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L QG S+ ++ P+++I+ PT ELA Q+ S C ++ ++ V GG
Sbjct: 119 LGHVVHQGRSRRSAEGRGPKMLIITPTRELAQQIDSVCTQIA-TRTKHIAVTVVGGVGYN 177
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q L+ G D+L+ATPGR + LI +G+ L + ++DE D + D F +++ +++
Sbjct: 178 PQKSALRRGCDILVATPGRLIDLIDQGVCNLSEVEILVIDEADRML-DMGFLPSVKQIVA 236
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
+P Q L +ATL + + ++ D V + +++F++ S
Sbjct: 237 LTPPERQTLLFSATLDEKTLGSIRDLVRDPVRVEIAAATSTADTVDQFVLPVS------- 289
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
F +K L++++++ S+ IVF K
Sbjct: 290 -----FDSKNDVLVEVLKREGASRVIVFMRTK 316
>gi|15599145|ref|NP_252639.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218889767|ref|YP_002438631.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|418587191|ref|ZP_13151225.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418592075|ref|ZP_13155953.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|421152185|ref|ZP_15611773.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
gi|421518498|ref|ZP_15965172.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|9950138|gb|AAG07337.1|AE004813_4 probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
gi|218769990|emb|CAW25752.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa LESB58]
gi|375042196|gb|EHS34856.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049103|gb|EHS41612.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
MPAO1/P2]
gi|404347980|gb|EJZ74329.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO579]
gi|404525815|gb|EKA36064.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa ATCC 14886]
Length = 449
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|107027528|ref|YP_625039.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|105896902|gb|ABF80066.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
Length = 507
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ +L+ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 25 SFASLGLIEPLLRNLQGLNYQTPTPVQAKAIPVVLGGKDVMAAAQTGTGKTAGFALPLLQ 84
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 85 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFVEYGK-GLDLRFLAAYGGVSINP 139
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 140 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELDAVFAA 198
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 199 LPAKRQTLLFSATFSDEI 216
>gi|422910505|ref|ZP_16945144.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|424660172|ref|ZP_18097419.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
gi|341633423|gb|EGS58231.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-09]
gi|408050933|gb|EKG86058.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-16]
Length = 397
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 109/194 (56%), Gaps = 7/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG SD +++++ + + +P+ IQ A P +++G+ I A Q+G+GKT +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L Q + Q + R +IL PT ELA QV K +S+ V GG ++
Sbjct: 62 KLSQGQTQRKKRV-----RALILVPTRELAMQVAEKVEQYGK-DTGLKSLAVFGGVDEQA 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L +GVDVL+ATPGR M + + + + +LDE D + D F ++ +I
Sbjct: 116 QKQRLIDGVDVLVATPGRLMDVYGQRAVYFEEIEMVVLDEADRML-DMGFIESINKIIDC 174
Query: 449 SPVTAQYLFVTATL 462
P Q+L +ATL
Sbjct: 175 LPSEVQFLLFSATL 188
>gi|119471733|ref|ZP_01614093.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
gi|119445356|gb|EAW26644.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Alteromonadales bacterium TW-7]
Length = 465
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +ILAPT ELA QV N +K S VV GG +
Sbjct: 62 RLSTG-----PKAKSNHVRALILAPTRELALQVSENVEEYAKHS-NVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 MPAKRQNLMFSATFSDDI 192
>gi|3986287|dbj|BAA34994.1| DjVLGB [Dugesia japonica]
Length = 781
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 7/221 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F EL + ++ ++ RP+ IQ A P ++E + + Q+GSGKT A+L+P+I
Sbjct: 184 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPII 243
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L ++L S + P+ +ILAPT ELA Q+LS + S P RS VV GG
Sbjct: 244 NHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS-LNTPLRSCVVYGGADTH 302
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
+Q+ +Q G +L+ATPGR + I++ + L + +LDE D + D FE ++ +I
Sbjct: 303 SQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML-DMGFEPQIRKIIE 361
Query: 448 SSP----VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484
S + Q L +AT P EI KL F + M G
Sbjct: 362 ESNMPSGINRQTLMFSATFPKEI-QKLAADFLYNYIFMTVG 401
>gi|407068274|ref|ZP_11099112.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 423
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 112/204 (54%), Gaps = 10/204 (4%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S KSF +LG S++++ +L NF P+ +Q A P V+EGK + Q+G+GKT A+ LP
Sbjct: 4 STKSFNQLGLSEHLLATLAELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFGLP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
+IQRL + + + +P++V +L PT ELA QV N +K G + +V G
Sbjct: 64 IIQRLIETK-----DNIIPNPKLVRALVLVPTRELAQQVFDNVTEYAK-GTDIKVVVAYG 117
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G K Q +NL+ G D+L+ATPGR + + + L + +LDE D + D F +
Sbjct: 118 GVSMKVQTDNLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDEADRML-DMGFMPDI 176
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ ++S Q LF +AT +I
Sbjct: 177 KRILSRMNEVRQTLFFSATFDNKI 200
>gi|288959329|ref|YP_003449670.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
gi|288911637|dbj|BAI73126.1| DEAD-box ATP-dependent RNA helicase [Azospirillum sp. B510]
Length = 512
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 36/283 (12%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S F LG + ++ ++ + + + IQA A P ++ G+ + Q+G+GKT A+ LP
Sbjct: 7 SMTEFSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLP 66
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++QRL Q + + SPRV+IL PT ELA Q+ + + + +P R V+ GG
Sbjct: 67 ILQRL----FQNKKRVAAKSPRVLILTPTRELALQIGDSFTTYGRH-LPIRRTVIHGGVG 121
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q Q+ + GV+VLIATPGR + L+ + + L + +LDE D + D F ++ +
Sbjct: 122 QSPQVAAIARGVEVLIATPGRLLDLMAQNHVNLGAIEVFVLDEADRML-DMGFIRDVRKV 180
Query: 446 ISSSPVTAQYLFVTATLP---VEIYNKL------VEVFPDCKVVMGPGMHRISPGLEEFL 496
++ P Q L +AT+P V++ N + +EV P V RI+ + L
Sbjct: 181 VAVLPKERQTLLFSATMPDAVVDLANSILTDAERIEVTPQSTTV-----ERIN---QRVL 232
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
GD K+ L L+E +++TIVF K
Sbjct: 233 FVERGD-------------KRRLLADLLEDEAMARTIVFARTK 262
>gi|116051990|ref|YP_789167.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
gi|355639459|ref|ZP_09051174.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|392982323|ref|YP_006480910.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|419756955|ref|ZP_14283300.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|421172786|ref|ZP_15630547.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
gi|115587211|gb|ABJ13226.1| probable ATP-dependent RNA helicase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|354831879|gb|EHF15883.1| hypothetical protein HMPREF1030_00260 [Pseudomonas sp. 2_1_26]
gi|384396710|gb|EIE43128.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa PADK2_CF510]
gi|392317828|gb|AFM63208.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa DK2]
gi|404537189|gb|EKA46803.1| ATP-dependent RNA helicase [Pseudomonas aeruginosa CI27]
Length = 449
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|332020302|gb|EGI60733.1| Putative ATP-dependent RNA helicase DDX5 [Acromyrmex echinatior]
Length = 570
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 14/270 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + S + P +ILAPT ELA Q+ R+ + GG + Q
Sbjct: 176 INHQP----RLSRNDGPIALILAPTRELAQQIQQVASDFGMSS-QVRNTCIFGGAPKGPQ 230
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 231 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVEQI 289
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 290 RPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDVCE 341
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E +K LL+ I P +KTI+F K
Sbjct: 342 EYEKESKLMKLLEEISNEPENKTIIFVETK 371
>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
Length = 473
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ ++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PADRQTLLFSAT 190
>gi|188587881|ref|YP_001922673.1| putative ATP-dependent RNA helicase RhlE [Clostridium botulinum E3
str. Alaska E43]
gi|188498162|gb|ACD51298.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum E3 str.
Alaska E43]
Length = 432
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 19/271 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L + + ++L + P+ IQ + P ++EGK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FKDLNIIEPIQKALTEAGYTNPTPIQEQSIPSLLEGKDFLGCAQTGTGKTAAFAIPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + + S + + +ILAPT ELA Q+ N SK ++ V+ GG QK Q
Sbjct: 63 IAKNQNKS---DKSRTIKALILAPTRELAIQIEENFTLYSKH-TNIKNTVIFGGVSQKPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L EGVD+LIATPGR + LI + + L N++ +LDE D +F D ++ +++
Sbjct: 119 TRILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMF-DMGMVRDVKKIVAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P E+ + + + D KV + P V + D +
Sbjct: 178 PKVRQNLLFSATMPSEVKSLVNSILKDPVKVEVAP-------------VSSTIDTITQGV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+KKS L+ L++ + +VF K
Sbjct: 225 YFVTKKDKKSLLVHLLKDESIKSLLVFSRTK 255
>gi|451987161|ref|ZP_21935321.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
gi|451755216|emb|CCQ87844.1| ATP-dependent RNA helicase PA3950 [Pseudomonas aeruginosa 18A]
Length = 449
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|429211643|ref|ZP_19202808.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
gi|428156125|gb|EKX02673.1| putative ATP-dependent RNA helicase [Pseudomonas sp. M1]
Length = 443
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 6/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ +L + P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFAALGLIEPLLRALDGLGYQNPTPVQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L QE Q + S R ++L PT ELA QV + R+ + VP R+ V GG
Sbjct: 62 KLLQEGPQ----VAANSVRALVLVPTRELAEQVHDSFRAYGQH-VPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ L+ L+ +LDE D + D F L+ + ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLYRQNALKFTQLQVLVLDEADRML-DLGFARELEEVFAA 175
Query: 449 SPVTAQYLFVTATL 462
P Q L +AT
Sbjct: 176 LPKRHQTLLFSATF 189
>gi|254236843|ref|ZP_04930166.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
gi|126168774|gb|EAZ54285.1| hypothetical protein PACG_02863 [Pseudomonas aeruginosa C3719]
Length = 449
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|338213906|ref|YP_004657963.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336307729|gb|AEI50831.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 431
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 23/275 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F L + ++ S+K + + P+ IQ A P V+EGK + Q+G+GKT A+ +P++Q
Sbjct: 2 TFDSLHLIEPILRSIKTEGYTTPTPIQEQAIPIVLEGKDLLGCAQTGTGKTAAFAIPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + S+ + + +IL PT ELA Q+ + + + + V+ GG +Q
Sbjct: 62 LLVQGQTHA-SRREKRTIKALILTPTRELAIQIGESFAAYGRH-TRLKHTVIFGGVKQLR 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q ++LQ GVD+LIATPGR + L+ + + L +L +LDE D + D F ++ +I+
Sbjct: 120 QTDSLQNGVDILIATPGRLIDLMAQRFVSLKHLEIFVLDEADRML-DMGFVHDVRRIIAV 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI KL + +++ P ++P D
Sbjct: 179 IPPKRQSLFFSATMPPEIV-KLADT-----ILVKPEKVEVTP----------VSSTVDII 222
Query: 509 PETAFL----NKKSALLQLIEKSPVSKTIVFCNKK 539
++ F NK + LL ++E + +VF K
Sbjct: 223 QQSVFFVDKDNKNALLLHILEDKSIETALVFTRTK 257
>gi|226366440|ref|YP_002784223.1| ATP-dependent RNA helicase [Rhodococcus opacus B4]
gi|226244930|dbj|BAH55278.1| putative ATP-dependent RNA helicase [Rhodococcus opacus B4]
Length = 645
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 117/209 (55%), Gaps = 8/209 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E+G ++++L R + PS IQA++ P + G + + Q+GSGKTLA+ LP++
Sbjct: 33 TFAEIGLPAPLVQALARNSITVPSPIQALSVPDALAGTNVLGRAQTGSGKTLAFGLPMLA 92
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQK 387
RL + E + +K PR ++L PT ELA QV+ + S + G+ R V GG
Sbjct: 93 RLARHEDRPAAK----RPRALVLVPTRELAFQVVDSLNSYAGAMGLTVRPAV--GGTPFT 146
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ GVD+L+ATPGR +++G L ++ LDE D + D F ++S++
Sbjct: 147 KQVDQLRRGVDILVATPGRLGDHLRQGTCILDSVEITALDEADQM-ADMGFLPEVRSILG 205
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
+P Q L +ATL E+ + + + PD
Sbjct: 206 ETPADGQRLLFSATLDREVQSLVRQFLPD 234
>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 431
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG S +++++ Q + PS IQA A P V+ GK + A Q+G+GKT + LP+++
Sbjct: 2 TFASLGLSAPILDAVADQGYDTPSPIQAQAIPAVIGGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L +L + + RV+IL PT ELA+QV + + K +P RS VV GG +
Sbjct: 62 LLIPGKL-----AQANQARVLILTPTRELAAQVGESVATYGK-NLPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L + ++ +L +LDE D + D F ++ +++
Sbjct: 116 QMMKLRQGVDVLVATPGRLLDLYNQRAVKFDHLEVLVLDEADRML-DMGFIHDIKKILAV 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPKKRQNLLFSATFSNDI 192
>gi|313676359|ref|YP_004054355.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
4126]
gi|312943057|gb|ADR22247.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
4126]
Length = 413
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 140/270 (51%), Gaps = 20/270 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL ++ +LK +N+ P+ IQ A P +++ + + Q+G+GKT A+ +P++Q
Sbjct: 3 FEELNIIAPILRALKEENYSEPTSIQEQAIPLLLQKNDIMASAQTGTGKTAAFAIPILQH 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L ++ S S + +IL PT ELA Q+ + + K R+ V+ GG Q Q
Sbjct: 63 LEKDN------SNSKKIKSLILTPTRELAIQIGESFTTYGKY-TSIRNTVIFGGVNQNKQ 115
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ GVDVLIATPGR + L+ +G + L +++ +LDE D + D F ++ +I+
Sbjct: 116 TAAIRNGVDVLIATPGRLLDLMNQGFISLKDIQYFVLDEADRML-DMGFIHDIKKVIAVL 174
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P + +VE+ K+++ P ++P V + +
Sbjct: 175 PSKRQSLFFSATMP----DTIVEL--SRKILINPKKIAVTP------VSSTAETIQQYLY 222
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T KK LL +++ S + + ++F K
Sbjct: 223 YTNKSTKKDLLLHILKDSKMDQVLLFDRTK 252
>gi|409202975|ref|ZP_11231178.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 473
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + + +++ Q + RP+ IQ A P ++EG+ + A Q+G+GKT + LP++Q
Sbjct: 2 SFSHLGLAPEINQAVVEQGYDRPTPIQEQAIPAILEGRDVMAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + G +K + + R +IL PT ELA QV + SK +P S VV GG +
Sbjct: 62 KL----IAG-TKPRANNVRALILTPTRELADQVWQSVALYSKH-LPISSEVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ ++ +L +LDE D + D F ++ +I
Sbjct: 116 QMMKLRKGIDVLVATPGRLLDLYQQNAVKFDDLEVLVLDEADRML-DMGFIHDIKRIIKV 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPSRRQNLMFSATFSEEI 192
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 25/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G S ++ +L Q ++ P+ IQA A P V++G+ + A Q+G+GKT + LP+IQ
Sbjct: 30 FADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 89
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L +TS SP R +IL PT ELA QV N ++ + P RS VV GG
Sbjct: 90 LLAH------ANTSASPARHPVRALILTPTRELADQVAENVKAYCRH-TPLRSTVVFGGV 142
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ G++++IATPGR + +++ L L + ++DE D + D F LQ
Sbjct: 143 DIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRML-DMGFLPDLQR 201
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+I+ P Q L +AT EI KL F V +E + + D
Sbjct: 202 IINLLPKERQNLMFSATFSGEI-KKLAATFLKNPVT-----------IEVARSNATADNV 249
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K A+ +I + + + IVF N K
Sbjct: 250 TQTMYHVNEQTKAEAVSYIIRERNLKQVIVFSNTK 284
>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 418
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 126/237 (53%), Gaps = 6/237 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG +I+ + + P+ IQ A P V+ K + Q+G+GKT A+ LP++
Sbjct: 2 SFASLGLHQDIIQQVTELGYTTPTPIQLAAIPAVLAKKDLMAGAQTGTGKTAAFALPLLH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
++ LQ +T+ +V++L PT ELA QV ++ S +P +S+V GG
Sbjct: 62 QI----LQAKDSNTTKGIQVLVLTPTRELAQQVHASFLKYS-AKLPIQSVVAYGGASINM 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL+ L++G DVL+ATPGR + LI + ++ L L+ +LDE D + D F + +Q ++
Sbjct: 117 QLDALRQGCDVLVATPGRLLELIMKNLIDLSKLQTLVLDEADRML-DMGFIIDIQRILKK 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
P + Q LF +AT EI+ + D +++ + + +E+ + D++S
Sbjct: 176 LPKSRQTLFFSATFNDEIFALSKTLLKDPQLIEVNSRNTTATQVEQTIYAVDQDRKS 232
>gi|449295671|gb|EMC91692.1| hypothetical protein BAUCODRAFT_301346 [Baudoinia compniacensis
UAMH 10762]
Length = 909
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 9/225 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ +G + +++++ R+ F P+ IQ P +++G+ + ++GSGKT A+++P+I+
Sbjct: 78 AFQRMGLNANLLKAITRKGFTVPTPIQRKTVPLILDGQDVVGMARTGSGKTAAFVIPMIE 137
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ S S R ++L+P+ ELA Q L + + G R+ ++ GG +
Sbjct: 138 KLK-------SHSAKVGARAIVLSPSRELALQTLKVVKDFGR-GTDLRATLLVGGDSLED 189
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q ++ D++IATPGRF L E L+L +++ + DE D LF + F L ++ S
Sbjct: 190 QFGSIASNPDIIIATPGRFEHLKVEMGLELSSVKYVVFDEADRLF-EMGFAAQLHEIMHS 248
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
P + Q L +ATLP + D K+V +I+PGLE
Sbjct: 249 LPASRQTLLFSATLPKGLVEFARAGLQDPKLVRLDAESKIAPGLE 293
>gi|386057057|ref|YP_005973579.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
gi|347303363|gb|AEO73477.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa M18]
Length = 449
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV ++ R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHASIRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRKRQTLLFSATFSDAIRTLARELLRD 203
>gi|156720285|dbj|BAF76795.1| vasa-related protein [Enchytraeus japonensis]
Length = 516
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 132/274 (48%), Gaps = 16/274 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF E D E++++ N+ +P+ IQ A P ++ + + Q+GSGKT A+LLPV+
Sbjct: 78 SFLEADVEDCFKENVRKANYDKPTPIQKWAIPIILAKRDLMACAQTGSGKTAAFLLPVLS 137
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + ++G S S P+ +I+ PT EL SQ+ + R S + R +VV GG +
Sbjct: 138 TMLRNGIEGSSYSEVQEPQAIIVGPTRELVSQIFNEARKFSYNTI-VRPVVVYGGVQTSY 196
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSL 445
QL +++G +++ TPGR + I G + L ++ ILDE D + + +D + + L
Sbjct: 197 QLREIEKGAHMIVGTPGRLLDFIGRGKISLKKVKFLILDEADRMLDLGFKDDIKKLMNEL 256
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
Q L +AT P E+ + E+ D V + + +E+ + +
Sbjct: 257 GMPPKQERQTLMFSATFPEEVQSLARELLNDYLFVTVGRVGGANTDIEQMVYNVGQ---- 312
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ L+ L+ P + +VF +K
Sbjct: 313 --------FDKRQKLIDLLNACPNERVLVFVEQK 338
>gi|373487181|ref|ZP_09577850.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
gi|372010063|gb|EHP10676.1| DEAD/DEAH box helicase domain protein [Holophaga foetida DSM 6591]
Length = 438
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 13/213 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +++ Q + P+ IQA A P V++G+ + Q+G+GKT A+ LP++Q
Sbjct: 2 SFDTLGLLPELLRAVREQGYETPTPIQAQAIPVVLQGRDLMGGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
RL + STS SP R ++L PT ELA QV + R+ K +P RS + GG
Sbjct: 62 RLAPQ------ASTSTSPAKHPIRALVLTPTRELAMQVEESIRTYGKH-IPLRSTTIFGG 114
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q+ L++GV++L+ATPGR + ++G L+ L +LDE D + D F ++
Sbjct: 115 VNINPQIAALRKGVEILVATPGRLLDHHQQGTLRFDQLEILVLDEADRML-DMGFIRDIK 173
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD 476
+++ P Q L +AT EI + D
Sbjct: 174 KILALLPAKRQSLLFSATFSGEIRELAASLLKD 206
>gi|260768003|ref|ZP_05876937.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
gi|260616033|gb|EEX41218.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii CIP 102972]
Length = 540
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 108/197 (54%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S +++++K + + PS IQA A P V++GK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILQAIKEKGYETPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G + + R +IL PT ELA+QV + S+ +P S VV GG + Q
Sbjct: 63 -----LTGGPRVRANQVRALILTPTRELAAQVQECVFTYSRH-LPLSSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRML-DMGFIRDIRKILELL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKNRQNLLFSATFSDEI 192
>gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family [Pseudoalteromonas haloplanktis
TAC125]
Length = 433
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 137/278 (49%), Gaps = 33/278 (11%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK + ++++L N+ + IQ A P V +GK + + Q+G+GKT A+ LP+IQ
Sbjct: 2 NFKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + E+ ST+ +P ++LAPT ELA Q+ +N + +K + + + GG
Sbjct: 62 KLFESEV-----STTNAPHALVLAPTRELAEQIANNFKDFAKH-TSLKVVSLFGGVNTAG 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L+EGVD+++ATPGR + I+ G L L +++ +LDE D + D F +Q +I S
Sbjct: 116 QANALKEGVDIVVATPGRLLDHIRLGNLSLASVKHLVLDEADRML-DMGFIEEMQGVIKS 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
Q L +AT P I F KV+ P + R+ DQ +
Sbjct: 175 CADDRQILLFSATFPAAIKQ-----FA-SKVLKQPEIVRV-------------DQTNSTA 215
Query: 509 PETAFL-------NKKSALLQLIEKSPVSKTIVFCNKK 539
A + K+ L +LI K + +VF N K
Sbjct: 216 STVAHVVYPVEERRKQELLSELIGKKNWQQVLVFVNMK 253
>gi|383863318|ref|XP_003707128.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
[Megachile rotundata]
Length = 566
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHTS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK S LL+ I +KTIVF K
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVFIETK 364
>gi|419797020|ref|ZP_14322524.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
gi|385698868|gb|EIG29205.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
Length = 457
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PTDRQTLLFSAT 190
>gi|143361556|sp|Q5QMN3.2|RH20_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 20
Length = 494
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 152/304 (50%), Gaps = 22/304 (7%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAM 297
S+ + E + ++R + + +G + + F+++G +Y+++ + + F+ P+ IQ+
Sbjct: 61 SVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQ 120
Query: 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
+P + G+ I ++GSGKTLAYLLP I + + + + P V++LAPT EL
Sbjct: 121 GWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL----APGDGPIVLVLAPTREL 176
Query: 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
A Q+ +S + GG + Q+ +LQ+GV+++IATPGR + +I+
Sbjct: 177 AVQIQQEATKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTN 235
Query: 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE--VFP 475
L + +LDE D + D FE ++ ++S Q L+ +AT P E+ +L +F
Sbjct: 236 LRRVTYLVLDEADRML-DMGFEPQIKKIVSQIRPDRQTLYWSATWPKEV-EQLARNFLFD 293
Query: 476 DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVF 535
KV++G EE + + Q + E+ NK LL+ I S+ ++F
Sbjct: 294 PYKVIIGS---------EELKANHAISQHVEILSESQKYNKLVNLLEDIMDG--SRILIF 342
Query: 536 CNKK 539
+ K
Sbjct: 343 MDTK 346
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 137/271 (50%), Gaps = 20/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F G S ++ +++ + + P+ IQA A P VV G+ + A Q+G+GKT A+ LP++Q
Sbjct: 2 TFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + +PR ++L PT ELA+QV + RS + +P RS V GG
Sbjct: 62 RL------SAVPTRHRAPRALVLTPTRELAAQVRESVRSYGRH-LPLRSTAVFGGVGINP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDV++ATPGR + +++ ++L + +LDE D + D F ++ ++++
Sbjct: 115 QISALRSGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDEADRML-DMGFIRDIRKVMAA 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI KL + +++ P +P + + + K
Sbjct: 174 LPQKRQNLLFSATFSGEI-RKLAD-----QILHDPASVDTAPR------NSVAELITHKV 221
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
A K++ L LI S+ +VF K
Sbjct: 222 HPVAQSRKRALLAHLIGNGKWSQVLVFTRTK 252
>gi|357454677|ref|XP_003597619.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|358344685|ref|XP_003636418.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|124360402|gb|ABN08415.1| Helicase, C-terminal [Medicago truncatula]
gi|355486667|gb|AES67870.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355502353|gb|AES83556.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 499
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 141/274 (51%), Gaps = 20/274 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF + DY++E +K+ F+ P+ IQ+ +P ++G+ I ++GSGKTLAYLLP I
Sbjct: 95 KSFSDAAFPDYVLEEVKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 154
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFR 385
+ + + P V++LAPT ELA Q+ +K G R S + GG
Sbjct: 155 VHVNAQPIL----DPGDGPIVLVLAPTRELAVQIQQEA---TKFGASSRIKSTCIYGGVP 207
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ +LQ+GV+++IATPGR + +++ L + +LDE D + D F+ ++ +
Sbjct: 208 KGPQVRDLQKGVEIIIATPGRLIDMLESNHTNLRRVTYLVLDEADRML-DMGFDPQIRKI 266
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+S Q L+ +AT P E+ +L F + P +++ G E+ + + Q
Sbjct: 267 VSQIRPDRQTLYWSATWPKEV-EQLARQF-----LYNP--YKVIIGSEDLKANHAIKQYV 318
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
D PE +K LL+ I S+ ++F + K
Sbjct: 319 DIVPEKQKYDKLVKLLEDIMDG--SRILIFMDTK 350
>gi|196231991|ref|ZP_03130847.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196224113|gb|EDY18627.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 405
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 24/271 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G D ++ ++ ++ P+ IQ AFP ++ G+ + + Q+G+GKT A+ LP++
Sbjct: 2 SFQDFGLLDEVVHGVQSMGYIDPTPIQLRAFPIILSGRDMMGSAQTGTGKTAAFALPLLT 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ + G R +IL PT ELA+QV + R S+ + + +V GG +
Sbjct: 62 KLK----------SHGDLRALILEPTRELAAQVETAFRDYSRF-MDVQVGLVHGGVGFGS 110
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q LQ+G DVL+ATPGR + +++G L N++ +LDEVD + D F ++ ++
Sbjct: 111 QRSMLQKGADVLVATPGRLLDFLEDGTANLKNIQYLVLDEVDRML-DMGFLPQVRRIVDR 169
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +ATLP E+ + D + V + + L + DQ+ D
Sbjct: 170 VPKERQTLFFSATLPPELETMTKWLLKDPEQVEIGARRSPAETVTHALYPVAKDQKFD-- 227
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
L+ L+E++ I+F + K
Sbjct: 228 ----------LLIALLERTKFDSAIIFTSTK 248
>gi|226506900|ref|NP_001142117.1| uncharacterized protein LOC100274281 [Zea mays]
gi|194704910|gb|ACF86539.1| unknown [Zea mays]
gi|194707190|gb|ACF87679.1| unknown [Zea mays]
gi|414875847|tpg|DAA52978.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 494
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 153/302 (50%), Gaps = 18/302 (5%)
Query: 240 SIHNLQYEPTDCPKQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAM 297
++ + E + ++R + + DG + + F+++G +Y+++ + + F+ P+ IQ+
Sbjct: 61 AVAGMTEEEVEAYRRRREITVDGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQ 120
Query: 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357
+P + G+ I ++GSGKTLAYLLP I + + + S P V++LAPT EL
Sbjct: 121 GWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPIL----SPGDGPIVLVLAPTREL 176
Query: 358 ASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417
A Q+ +S + GG + Q+ +LQ+GV+++IATPGR + +I+
Sbjct: 177 AVQIQQEATKFGASS-KIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTN 235
Query: 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477
L + +LDE D + D FE ++ ++S Q L+ +AT P E+ +L F
Sbjct: 236 LRRVTYLVLDEADRML-DMGFEPQIKKIVSQIRPDRQTLYWSATWPKEV-EQLARNF--- 290
Query: 478 KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
+ P ++++ G E+ + + Q + E+ NK LL+ I S+ ++F +
Sbjct: 291 --LFDP--YKVTIGSEDLKANHAIVQHVEILSESQKYNKLVNLLEDIMDG--SRILIFMD 344
Query: 538 KK 539
K
Sbjct: 345 TK 346
>gi|449708114|gb|EMD47635.1| ethylene-responsive RNA helicase, putative [Entamoeba histolytica
KU27]
Length = 541
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E +++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 160 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 219
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q +
Sbjct: 220 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTAIKTVRCFGGVPQSS 274
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++ Q G D+ +ATPGR + IK G+ L ILDE D + + FEV +Q +I
Sbjct: 275 QMKDFQSGCDICVATPGRLIDFIKRGVTSLSRCTFLILDEADRML-EMGFEVQVQDIIGQ 333
Query: 449 SPVTAQYLFVTATLPVEI 466
Q + TAT P I
Sbjct: 334 IRPDRQTVMWTATWPQAI 351
>gi|403057992|ref|YP_006646209.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402805318|gb|AFR02956.1| ATP-dependent RNA helicase RhlE [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 470
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 114/207 (55%), Gaps = 8/207 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q K P R +IL PT ELA+Q+ N ++ SK + RS+VV GG
Sbjct: 62 LLTSREAQ--HKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LSLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDLEHQRAVDLSQVEILVLDEADRML-DMGFIHDIRRVLA 177
Query: 448 SSPVTAQYLFVTATLPVEI---YNKLV 471
PV Q L +AT EI NKL+
Sbjct: 178 KLPVKRQNLLFSATFSDEIKALANKLL 204
>gi|67483276|ref|XP_656915.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56474154|gb|EAL51537.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 535
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E +++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 154 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 213
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q +
Sbjct: 214 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTAIKTVRCFGGVPQSS 268
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++ Q G D+ +ATPGR + IK G+ L ILDE D + + FEV +Q +I
Sbjct: 269 QMKDFQSGCDICVATPGRLIDFIKRGVTSLSRCTFLILDEADRML-EMGFEVQVQDIIGQ 327
Query: 449 SPVTAQYLFVTATLPVEI 466
Q + TAT P I
Sbjct: 328 IRPDRQTVMWTATWPQAI 345
>gi|424843870|ref|ZP_18268495.1| DNA/RNA helicase, superfamily II [Saprospira grandis DSM 2844]
gi|395322068|gb|EJF54989.1| DNA/RNA helicase, superfamily II [Saprospira grandis DSM 2844]
Length = 414
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 11/202 (5%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
FSR F+++ + E L F RP+ IQ A P+++G+ + Q+G+GKT A+ +
Sbjct: 3 FSRYPFEQI-----LKERLAVLEFKRPTDIQYKAIEPILKGQDVLAVAQTGTGKTAAFAI 57
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
P+ Q+L L KS +P+VV++ PT ELA Q+ S +L++ G ++ + GG
Sbjct: 58 PLAQKL----LASRDKSKGRAPKVVVMVPTHELAQQIESFIHNLTR-GSWIETLAIYGGS 112
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+Q QL L+ GVD+L+ATPGR L +G L+L ++ +LDE D + +E +Q
Sbjct: 113 KQDKQLAKLETGVDILVATPGRLFDLQAQGALRLQEVQTLVLDEADRMLQFGFYE-DIQD 171
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
L+ P Q LF +AT+ +I
Sbjct: 172 LLQRLPQKRQTLFFSATIDQKI 193
>gi|209886522|ref|YP_002290379.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|337739955|ref|YP_004631683.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
gi|386028973|ref|YP_005949748.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM4]
gi|209874718|gb|ACI94514.1| putative ATP-dependent RNA helicase RhlE [Oligotropha
carboxidovorans OM5]
gi|336094041|gb|AEI01867.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM4]
gi|336097619|gb|AEI05442.1| ATP-dependent RNA helicase RhlE [Oligotropha carboxidovorans OM5]
Length = 512
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 143/273 (52%), Gaps = 22/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G ++ + +L +N++ P+ IQA P + G+ I Q+G+GKT ++ LP++
Sbjct: 3 SFQDFGLAETITRALSEENYVTPTPIQAQTIPIAITGRDVIGIAQTGTGKTASFALPILH 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFRQ 386
RL + ++ K+ RV++L+PT EL+ Q+L S + G R + + GG
Sbjct: 63 RLLENRVRPQPKTC----RVLVLSPTRELSGQILD---SFTAYGRHLRLSATLAIGGVPM 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L GV+VL+ATPGR + L++ L+L + +LDE D + D F ++ ++
Sbjct: 116 GRQVRALMGGVEVLVATPGRLLDLVQGNALKLGQVEFLVLDEADRML-DMGFIHDIRKIV 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
+ P Q LF +AT+P +I + L E ++ P ++P V + ++ +
Sbjct: 175 AKLPHRRQTLFFSATMPKDIAD-LAE-----HMLREPARVAVTP------VSSTVERIAQ 222
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ + K + L +L++ PV++ +VF K
Sbjct: 223 RIIQLDSSAKPATLSELLKSEPVNRALVFTRTK 255
>gi|187934290|ref|YP_001887690.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
Eklund 17B]
gi|187722443|gb|ACD23664.1| ATP-dependent RNA helicase RhlE [Clostridium botulinum B str.
Eklund 17B]
Length = 432
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 134/274 (48%), Gaps = 25/274 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+L + + +L + P+ IQ + P ++ GK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FKDLNIIEPIQRALTEAGYTNPTPIQEQSIPSLLNGKDFLGCAQTGTGKTAAFAIPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ Q + S PR + ILAPT ELA Q+ N SK ++ V+ GG Q
Sbjct: 63 IAQNQ------KKSDKPRTIKALILAPTRELAIQIEENFTLYSKH-TNIKNTVIFGGVSQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
K Q L EGVD+LIATPGR + LI + + L N++ +LDE D +F D ++ ++
Sbjct: 116 KPQTRILGEGVDILIATPGRLLDLIDQKYIDLSNVKHFVLDEADRMF-DMGMVRDVKKIV 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ P Q L +AT+P E+ + + + D KV + P V + D +
Sbjct: 175 AKLPKVRQNLLFSATMPSEVKSLVNSILKDPVKVEVAP-------------VSSTIDTIT 221
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+KKS L+ L++ + +VF K
Sbjct: 222 QGVYFVTKKDKKSLLVHLLKDESIKSLLVFSRTK 255
>gi|332533777|ref|ZP_08409633.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036708|gb|EGI73171.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas haloplanktis
ANT/505]
Length = 464
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 MPAKRQNLMFSATFSDEI 192
>gi|323138624|ref|ZP_08073691.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
gi|322396112|gb|EFX98646.1| DEAD/DEAH box helicase domain protein [Methylocystis sp. ATCC
49242]
Length = 496
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 133/275 (48%), Gaps = 26/275 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S ++ +++ + P+ IQA A PP ++G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFDELGLSQKVLAAVQASGYTTPTPIQAQAIPPALQGRDILGIAQTGTGKTAAFTLPMLS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL Q ++ + PR +IL PT ELA+QV S +K G + V + GG
Sbjct: 62 RLEQ------GRARARVPRTLILEPTRELAAQV---EESFAKYGANHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + G DVLIATPGR + G L L + ++DE D + D F ++ +
Sbjct: 113 GDQEAKIMRGADVLIATPGRLLDFFDRGKLLLTGIEILVIDEADRML-DMGFIPDIERVC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPG-LEEFLVDCSGDQES 505
P T Q LF +AT+P EI +L E F + + + + + LV G
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-TRLTEAFLHNPIRIEVARASTTASTIRQALVASRGHA-- 228
Query: 506 DKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKK 539
+K+ L LI + + IVFCN+K
Sbjct: 229 ---------DKRETLRNLIRGAENLKNAIVFCNRK 254
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 115/210 (54%), Gaps = 14/210 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F++ G + ++++L Q ++ P+ IQA A P V++G + A Q+G+GKT + LP+IQ
Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84
Query: 330 LRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
L ++S SP R +IL PT ELA QV +N ++ S+ P RS+VV GG
Sbjct: 85 LMAH------ANSSASPARHPVRALILTPTRELADQVAANVKAYSRH-TPLRSLVVFGGM 137
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q L+ GV+++IATPGR + +++ + L + ++DE D + D F LQ
Sbjct: 138 DMTPQTAALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRML-DMGFLPDLQR 196
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVF 474
+I+ P Q L +AT EI KL F
Sbjct: 197 IINLLPKQRQNLMFSATFSPEI-KKLAATF 225
>gi|449664058|ref|XP_002155207.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Hydra
magnipapillata]
Length = 473
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 22/281 (7%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
++ +F L +++ L+ + +P+ IQ + P V++ K+ A Q+GSGKTL Y+ P
Sbjct: 63 NQSTFSTLNLRSDLLDGLQNIHITQPTIIQMLGIPLVLQKKNVFCAAQTGSGKTLVYVTP 122
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+IQ+L E G S PRV++L+PT ELASQ+L + S FRS+ V G +
Sbjct: 123 IIQKLGNEVEAGFIGRLS-RPRVLVLSPTRELASQILKVFKHFSHY-CRFRSVGVIGQNQ 180
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+K + ++ VDV++ TP + ++G+L ++R + DE D L D++F
Sbjct: 181 KKWAKDYVKGLVDVVVGTPSTILKWNQKGLLNFSDVRYVVFDEADTLM-DDNFRNTTSEF 239
Query: 446 I--------SSSPVTAQYLFVTATLPVE-IYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496
+ S + Q++ ATLP + + + E PD +V +H++ P ++
Sbjct: 240 LKLLDCESDSKNGTNIQFILTAATLPPKGVLGRYQEFIPDLQVCQS-NLHKVLPHIKHSF 298
Query: 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
+ DQ+S+ +NK + L +K K I+FCN
Sbjct: 299 MKTRQDQKSE-----LLINKLTLFLSQSDK----KCIIFCN 330
>gi|384252098|gb|EIE25575.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 610
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 139/276 (50%), Gaps = 21/276 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP-- 325
++F+ +G + +++ ++R + P+ IQA A+P ++G+ + ++GSGKT +LLP
Sbjct: 118 QTFESVGFTSNIMDEIRRAGYKAPTPIQAQAWPVALQGRDLVAIAKTGSGKTCGFLLPGF 177
Query: 326 -VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+ +R + QG P +++LAPT ELA Q+ + R+ GG
Sbjct: 178 LHVNAVRPDPRQG--------PSMLVLAPTRELAVQIKEEADKFGRSA-GIRNTCTYGGA 228
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
+ QL ++Q GV ++IATPGR ++ G ++L + +LDE D + D FE +Q
Sbjct: 229 PKGPQLRDIQYGVHLIIATPGRLNDFLEGGQVRLGQVSYLVLDEADRML-DMGFEPQIQR 287
Query: 445 LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ S P Q LF +AT P E+ + F K V H G+EE LV +
Sbjct: 288 IVRSIPTNRQTLFFSATWPREV-KAIASQFVTNKTV-----HVFVGGVEENLVANKAITQ 341
Query: 505 SDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKK 539
+ + NK+ L +++ P ++ I+FC+ K
Sbjct: 342 FVHVMK-PYDNKQQKLREILHSKPTGTRIIIFCSTK 376
>gi|312375424|gb|EFR22803.1| hypothetical protein AND_14200 [Anopheles darlingi]
Length = 971
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 111/208 (53%), Gaps = 7/208 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF+E +Y++ +K+Q F RP+ IQ+ +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 267 QSFEEGNFPEYVMNEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGL 326
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQ 386
+ ++ + P V++LAPT ELA Q+ + R P R + GG +
Sbjct: 327 VHISHQK----PLTRGDGPIVLVLAPTRELAQQIQTVVREFGNHSKPNIRYTCIFGGALK 382
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ +L+ GV+V+IATPGR + ++ GI L +LDE D + D FE ++ ++
Sbjct: 383 GPQVRDLERGVEVVIATPGRLIDFLERGITNLHRCTYLVLDEADRML-DMGFEPQIRKIV 441
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF 474
Q L +AT P E+ L E F
Sbjct: 442 EQIRPDRQVLMWSATWPKEV-QTLAEDF 468
>gi|306843833|ref|ZP_07476431.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
gi|306275911|gb|EFM57627.1| DEAD-box ATP dependent DNA helicase [Brucella inopinata BO1]
Length = 482
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDTLKNAIIFCNRK 257
>gi|296536687|ref|ZP_06898752.1| ATP-dependent RNA helicase RhlE, partial [Roseomonas cervicalis
ATCC 49957]
gi|296262986|gb|EFH09546.1| ATP-dependent RNA helicase RhlE [Roseomonas cervicalis ATCC 49957]
Length = 560
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 142/281 (50%), Gaps = 34/281 (12%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+R F++LG S+ ++ + ++ P+ IQ A P V+ G+ + Q+G+GKT +++LP
Sbjct: 103 TRAVFEDLGLSEALLRGVAEAGYVHPTPIQEQAIPVVLMGRDVMGCAQTGTGKTASFVLP 162
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGG 383
++ ++ S++ + PR +IL PT ELA QV N K G + ++ GG
Sbjct: 163 MM------DILAGSRAKARMPRSLILEPTRELALQVAEN---FVKYGTHMKLNHALLIGG 213
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
Q + L +GVDVLIATPGR + L + G + L + + ++DE D + D F ++
Sbjct: 214 ESMSDQRDVLDKGVDVLIATPGRLLDLFERGRVMLADCKVLVIDEADRML-DMGFIPDVE 272
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG--MHRISPGLEEFLVD 498
++S P Q LF +AT+ EI KL + F P V P I+ GL F+
Sbjct: 273 RIVSLLPPLRQTLFFSATMAPEI-RKLADAFLQNPKTISVSAPASVATTITAGL-AFV-- 328
Query: 499 CSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
PE +K+ AL +LI V ++FCN+K
Sbjct: 329 ---------QPE----DKRRALRRLIRSQDVQNALIFCNRK 356
>gi|444915540|ref|ZP_21235671.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
gi|444713263|gb|ELW54166.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
Length = 486
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 114/198 (57%), Gaps = 4/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++ ++ ++K + + P+ IQ A P V+EGK + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEDLKLAEPLLRAVKEEGYSTPTPIQQQAIPYVLEGKDVLGCAQTGTGKTAAFTLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL ++ ++L+PT ELA+Q+ + R+ + S V+ GG Q
Sbjct: 62 RLSVGRPPPPARGRPIR--ALVLSPTRELAAQIGDSVRAYGRY-TGLNSAVIFGGVGQNA 118
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + L++GVD+L+ATPGR + L+ +G + L +LDE D + D F ++ +I++
Sbjct: 119 QEQTLRQGVDILVATPGRLLDLMNQGFVSYKALEVFVLDEADRML-DMGFIHDVKRVIAA 177
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 178 LPRPRQTLFFSATMPPEI 195
>gi|357384570|ref|YP_004899294.1| ATP-dependent RNA helicase [Pelagibacterium halotolerans B2]
gi|351593207|gb|AEQ51544.1| ATP-dependent RNA helicase [Pelagibacterium halotolerans B2]
Length = 459
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 23/273 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG D + E++ + +P+ IQA A P V+E K I Q+G+GKT +++LP++
Sbjct: 5 FSELGLGDKVTEAVAAAGYTKPTDIQAQAIPHVLEKKDLIGIAQTGTGKTASFVLPMLSL 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQK 387
L + ++ + PR +IL PT ELA+QV N K G R V + GG +
Sbjct: 65 LEK------GRARARMPRTLILEPTRELAAQVHEN---FEKYGKNHRLTVALLIGGVSFE 115
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + L G DVLIATPGR + + G L L + ++DE D + D F ++ + S
Sbjct: 116 DQNKKLDRGADVLIATPGRMLDHFERGRLLLTGVDILVIDEADRML-DMGFIPDIERICS 174
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI D V + + +E+ L+ K
Sbjct: 175 LLPPRRQTLFFSATMPPEIQKLTQRFLRDPVKVEVARQNSTADTIEQVLLKVG------K 228
Query: 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKK 539
TP K++AL I + + I+FCN+K
Sbjct: 229 TPA----EKRAALRDQIRAAKDLKNAIIFCNRK 257
>gi|296116543|ref|ZP_06835153.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
gi|295976755|gb|EFG83523.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter hansenii
ATCC 23769]
Length = 539
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 139/273 (50%), Gaps = 26/273 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S + ++++ + P+ IQA A P ++ G+ + Q+G+GKT ++ LP++
Sbjct: 50 FSELGLSAPIQQAIEEMGYRHPTPIQAQAIPYILMGRDVLGVAQTGTGKTASFTLPML-- 107
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E L G S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 108 ---EILSG-SRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGESMAEQ 162
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L + G L L + ++DE D + D F ++ ++S
Sbjct: 163 KEALNRGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRML-DMGFIPDIEKIVSML 221
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q LF +AT+ EI +L ++F P V P ++ +E LV D
Sbjct: 222 SPIRQTLFFSATMAPEI-RRLADMFLHNPKEITVSRPS--SVASTIETGLVIVEED---- 274
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ AL +L+ +S + I+FCN+K
Sbjct: 275 --------DKRRALRKLLRESDMQNAIIFCNRK 299
>gi|359443658|ref|ZP_09233492.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
gi|358034494|dbj|GAA69741.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20429]
Length = 464
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 MPAKRQNLMFSATFSDEI 192
>gi|359435528|ref|ZP_09225727.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
gi|357917829|dbj|GAA61976.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20652]
Length = 464
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 MPAKRQNLMFSATFSDEI 192
>gi|253687917|ref|YP_003017107.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754495|gb|ACT12571.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 477
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 117/216 (54%), Gaps = 8/216 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ +Q A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSADILRAIDEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L E Q +K P R +IL PT ELA+Q+ N ++ SK + RS+VV GG
Sbjct: 62 LLNSREAQ--NKGKGRRPVRALILTPTRELAAQIDENVKAYSKY-LRLRSLVVFGGVSIN 118
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 119 PQMMKLRGGVDILVATPGRLLDLEHQNAVDLSQIEILVLDEADRML-DMGFIHDIRRVLA 177
Query: 448 SSPVTAQYLFVTATLPVEI---YNKLVEVFPDCKVV 480
P Q L +AT EI NKL+ +VV
Sbjct: 178 KLPAKRQNLLFSATFSDEIKALANKLLTNPASVEVV 213
>gi|452838537|gb|EME40477.1| hypothetical protein DOTSEDRAFT_90700 [Dothistroma septosporum
NZE10]
Length = 1010
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 9/225 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ +G + ++++++ R+ F P+ IQ P +++G+ + ++GSGKT A+++P+I+
Sbjct: 182 AFQTMGLNTHLLKAITRKGFSVPTPIQRKTIPLILDGQDVVGMARTGSGKTAAFVIPMIE 241
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ S S R ++L+P+ ELA Q L + + K G R+ ++ GG +
Sbjct: 242 KLK-------SHSAKVGARAIVLSPSRELALQTLKVVKEMGK-GTDLRTTLLVGGDSLED 293
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q ++ D++IATPGRF L E L+L +++ + DE D LF + F L ++ S
Sbjct: 294 QFSSMASNPDIIIATPGRFEHLKVEMGLELSSVKYVVFDEADRLF-EMGFAAQLHEIMYS 352
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493
P Q L +ATLP + D K+V +I+PGL+
Sbjct: 353 LPPNRQTLLFSATLPKSLVEFARAGLQDPKLVRLDAESKIAPGLQ 397
>gi|429770137|ref|ZP_19302216.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
gi|429185399|gb|EKY26379.1| putative ATP-dependent RNA helicase RhlE [Brevundimonas diminuta
470-4]
Length = 491
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 117/212 (55%), Gaps = 7/212 (3%)
Query: 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQ 332
+G + ++ +L + +P+ IQA + P V++GK + Q+G+GKT A+ LP++ RL +
Sbjct: 1 MGLNKALLTALASTGYEKPTPIQAKSIPDVMKGKDLLGIAQTGTGKTAAFALPILHRLAE 60
Query: 333 EELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN 392
+ ++T R +IL+PT ELA+Q+ + + + FR VV GG + Q
Sbjct: 61 NRVAPKPRTT----RALILSPTRELATQIADSFKQYG-AHLGFRVAVVFGGVKYGPQERA 115
Query: 393 LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT 452
LQ+G+DVL+A PGR + I++ L L + +LDE D + D F ++ ++S P
Sbjct: 116 LQQGLDVLVAAPGRLLDHIQQKTLDLSSTEIFVLDEADQML-DLGFIKPIRQIVSRIPAK 174
Query: 453 AQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP 483
Q LF +AT+P EI E+ D KV + P
Sbjct: 175 RQNLFFSATMPSEIGKLAGELLKDPVKVQVTP 206
>gi|412990813|emb|CCO18185.1| predicted protein [Bathycoccus prasinos]
Length = 1225
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 11/205 (5%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KS+ + G S+ ++E ++R F P IQA A P ++ G+ CI ++GSGKTLAY+LP++
Sbjct: 483 KSWNQAGLSNKIMELIRRSGFENPMPIQAQALPIIMSGRDCIAVAKTGSGKTLAYILPML 542
Query: 328 QRLR-QEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ ++ Q E++ P +I+ PT EL +Q+ CR K V R + V GG
Sbjct: 543 RHIKDQPEIK-----NGDGPIAMIVGPTRELVTQIGKECRKFGKT-VGVRCVSVYGGSGV 596
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR---CAILDEVDILFNDEDFEVALQ 443
++Q+ +L+ G + + TPGR + ++ G ++ NLR +LDE D +F D FE +
Sbjct: 597 QSQITDLKRGCEAVACTPGRMIDILTTGAGKITNLRRITYFVLDEADRMF-DMGFEPQIT 655
Query: 444 SLISSSPVTAQYLFVTATLPVEIYN 468
+++++ Q + +AT P + N
Sbjct: 656 RILANTRPDRQTVMFSATFPRAMEN 680
>gi|74317119|ref|YP_314859.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74056614|gb|AAZ97054.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 460
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 5/199 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG + ++ +L ++ P+ IQA P ++G + A Q+G+GKT A+ LP+IQ
Sbjct: 3 TFAELGLAPDILRALDEMGYVSPTPIQAQVIPRALQGGDILGAAQTGTGKTAAFALPLIQ 62
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL S S + P R +IL PT ELA QV ++ +K VP RS+VV GG
Sbjct: 63 RLL--PFANTSTSPAKHPIRALILTPTRELAIQVEEAIQAYTKH-VPLRSLVVYGGVNIN 119
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
TQ+ L+ GV++L+ATPGR + ++ L L + +LDE D + D F L+ +++
Sbjct: 120 TQIPILKTGVEILVATPGRLLDHVQNKTLMLTQVNTLVLDEADRML-DMGFMPDLRRIVA 178
Query: 448 SSPVTAQYLFVTATLPVEI 466
P + +AT P EI
Sbjct: 179 LLPAQRVNMMFSATFPEEI 197
>gi|395784485|ref|ZP_10464323.1| hypothetical protein ME3_00979 [Bartonella melophagi K-2C]
gi|395423735|gb|EJF89929.1| hypothetical protein ME3_00979 [Bartonella melophagi K-2C]
Length = 467
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 142/278 (51%), Gaps = 30/278 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ +I++++ + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 7 SFDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--TGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R VV GG
Sbjct: 67 LLEK------GRARARMPRTLILEPTRELAAQVQEN---FDKYGMNHRLNVVLLIGGVSF 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L++G DVLIATPGR + + G L LI ++DE D + D F ++ +
Sbjct: 118 EDQNRKLEQGADVLIATPGRLLDHFERGKLLLIGTETLVIDEADRML-DMGFIPDIERIC 176
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+P T Q LF +AT+ EI KL E F P C V + + + LV SG +
Sbjct: 177 KLTPFTRQTLFFSATMAPEI-TKLTEQFLHSPICVEVTKAS--STATTITQRLVK-SGSK 232
Query: 504 ESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L +LI E + I+FCN+K
Sbjct: 233 AWD---------KRAVLRELIYNEGDELKNAIIFCNRK 261
>gi|375262622|ref|YP_005024852.1| ATP-dependent RNA helicase RhlE [Vibrio sp. EJY3]
gi|369843050|gb|AEX23878.1| ATP-dependent RNA helicase RhlE [Vibrio sp. EJY3]
Length = 506
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 7/199 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P ++EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAILEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R +IL PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNHIRALILTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR M L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLMDLYSQNAIKFDQLEVLVLDEADRML-DMGFIRDIRKILDLL 175
Query: 450 PVTAQYLFVTATLPVEIYN 468
P Q L +AT EI +
Sbjct: 176 PKQRQNLLFSATFSNEIRD 194
>gi|270156904|ref|ZP_06185561.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|289164670|ref|YP_003454808.1| ATP-dependent RNA helicase RhlE [Legionella longbeachae NSW150]
gi|269988929|gb|EEZ95183.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
D-4968]
gi|288857843|emb|CBJ11689.1| putative ATP-dependent RNA helicase RhlE [Legionella longbeachae
NSW150]
Length = 421
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SFK LG + +++S+ + PS IQ A P ++ GK + + Q+G+GKT +++LP++Q
Sbjct: 2 SFKSLGLIEPLLQSIDELGYKEPSSIQIQAIPKILSGKDVLASAQTGTGKTASFVLPILQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ S R +IL PT ELASQV N + + FRS VV GG +
Sbjct: 62 MLSTK-----PRANSNRTRTLILTPTRELASQVHENIIQYGRY-LSFRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GV++L+ATPGR + L + +Q + +LDE D + D F ++ +I+
Sbjct: 116 QMMKLRSGVEILVATPGRLLDLYNQRAIQFDQVDTLVLDEADRML-DMGFIHDMKRIINY 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 LPKNRQNLMFSATFTDEI 192
>gi|301106809|ref|XP_002902487.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098361|gb|EEY56413.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 470
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 140/295 (47%), Gaps = 27/295 (9%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
SA F+ SF++LG + LK P+ IQ + P ++ + A Q+G+GK
Sbjct: 25 SAPRRLFAAASFQDLGVDARTVSGLKEMKITTPTGIQQKSIPAILARHDILCAAQTGTGK 84
Query: 319 TLAYLLPVIQR-LRQEELQGLSKSTS-------GSPRVVILAPTAELASQVLSNCRSLSK 370
TLAYL+PVI++ LR+E + L + T G P ++L P+ ELA QV S + LS
Sbjct: 85 TLAYLVPVIEQILRKEAAKKLERETKGPTEVVLGRPSALVLLPSRELALQVASVAKQLSH 144
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
F S +T G R+ Q +N +D++I TPGR I +G + + ++DE D
Sbjct: 145 SA-KFASCTITSGERKSIQQKNTSRRLDLIIGTPGRVAKCISKGDFFVSCIDTVVVDEAD 203
Query: 431 ILFNDE-DFEVALQSLISSSPVTA-------QYLFVTATLPVEIYNKLVEVFPDCKVVMG 482
LF+ + F L +++ + +A Q + AT+ I L + F + +VV
Sbjct: 204 TLFDAKMGFRKELDAVLGTIQASAAKRNQSLQMILAAATIRSPIDQILKKKFGELRVVSD 263
Query: 483 PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCN 537
+H+ + E V + + + E L+++ A +KT++FC
Sbjct: 264 DKIHKTPASIREEFVRVNPESKHSALREALHLHRRRA----------AKTMIFCR 308
>gi|416864075|ref|ZP_11915427.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|334835095|gb|EGM13996.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa 138244]
gi|453044054|gb|EME91780.1| putative ATP-dependent RNA helicase [Pseudomonas aeruginosa
PA21_ST175]
Length = 449
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 111/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++++L+ P+ IQA A PP ++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLLDPLLKALEGLGHGTPTPIQAQAIPPALKGRDLLAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E Q + S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTLEGPQ----VAANSVRALVLVPTRELAEQVHGSVRDYGQH-LPLRTAVAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L ++ ++ L+ +LDE D + D F L L ++
Sbjct: 117 QMMKLRKGVDILVATPGRLLDLYRQNAVKFAQLQALVLDEADRML-DLGFARELDELFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPRRRQTLLFSATFSDAIRTLARELLRD 203
>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
versatilis 301]
gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera versatilis
301]
Length = 466
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 25/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG + ++++L + +P+ IQA A P + G + Q+G+GKT A+
Sbjct: 11 AFTDLGLAPELLKALTESGYTKPTPIQAQAIPVALAGGDLMAGAQTGTGKTAAF------ 64
Query: 329 RLRQEELQGLSKSTSGSP-----RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
L + S+S SP R +IL PT ELA QV + ++ +K P RS+VV GG
Sbjct: 65 ALPLLQKLLPLASSSASPAKHPVRALILTPTRELAIQVEESVKAYAKH-TPLRSLVVYGG 123
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
KTQ +L+ GV+VL+ATPGR + I++ +QL ++ +LDE D + D F L+
Sbjct: 124 VDIKTQTPHLKTGVEVLVATPGRLLDHIEQKTIQLNQVQILVLDEADRML-DMGFMPDLK 182
Query: 444 SLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+++ P Q L +AT +I KL + F + P + +E + + D
Sbjct: 183 RILALLPKQRQNLMFSATFSNDI-KKLADEF-----LTKPQL------IEVARSNATNDN 230
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K E A +K++ L+QL++ + S+ I+F K
Sbjct: 231 VTQKVYEVAQSDKETLLIQLLKAANASQVIIFTKTK 266
>gi|392536161|ref|ZP_10283298.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 464
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 MPAKRQNLMFSATFSDEI 192
>gi|359456093|ref|ZP_09245284.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
gi|358046842|dbj|GAA81533.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20495]
Length = 464
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 MPAKRQNLMFSATFSDEI 192
>gi|92113266|ref|YP_573194.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796356|gb|ABE58495.1| ATP-dependent RNA helicase CsdA [Chromohalobacter salexigens DSM
3043]
Length = 568
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 132/272 (48%), Gaps = 22/272 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F EL ++ +L+ + PS IQA P ++EG+ + Q+G+GKT A+ LP++
Sbjct: 10 TFAELSLPSTILSTLETLGYETPSLIQAKTIPALLEGRDVLGQAQTGTGKTAAFALPLLS 69
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +LQ P+V++LAPT ELA QV ++ + + + GG +
Sbjct: 70 RL---DLQ------RREPQVLVLAPTRELAQQVAASFVQYGRGVKGLEVLSLCGGQEYRE 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL L+ G V++ TPGR + + G L+L L +LDE D + F ++ ++S
Sbjct: 121 QLSGLRRGAQVIVGTPGRVIDHLDRGSLKLDGLNALVLDEADEMLR-MGFIDDVKRVVSD 179
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
+P AQ +F +ATLP EI + D + + + G+E+ LV G
Sbjct: 180 TPKDAQRVFFSATLPDEISRIVNHYLVDPLRIAIETKTKTAEGIEQRLVRIEGGA----- 234
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
K AL +L+E PV IVF ++
Sbjct: 235 -------KLEALSRLLEVEPVDAAIVFVRTRA 259
>gi|414071784|ref|ZP_11407745.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
gi|410805784|gb|EKS11789.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. Bsw20308]
Length = 464
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-DVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 MPAKRQNLMFSATFSDEI 192
>gi|332286324|ref|YP_004418235.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330430277|gb|AEC21611.1| putative ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 477
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG ++ ++ ++ + P+ IQA A P V++G + A Q+G+GKT + LP++
Sbjct: 6 TFASLGLAEPLLRAVTDTGYEHPTPIQAQAIPQVMQGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q QG G PRV+IL PT EL +QV + R+ SK RSMV+ GG
Sbjct: 66 RLLQNPAQG---RKPGQPRVLILTPTRELTAQVEESVRTYSKH-TSIRSMVMFGGVNINP 121
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++ +D+L+ATPGR + ++ + L + +LDE D + D F ++ +++
Sbjct: 122 QISALRKPLDILVATPGRLLDHAQQKTVDLSAVEILVLDEADRML-DMGFIRDIRRILAL 180
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 181 LPKQRQNLLFSATFSDEI 198
>gi|428151523|ref|ZP_18999239.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|427538506|emb|CCM95377.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 459
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPARRQNLLFSATFSDEI 194
>gi|421918244|ref|ZP_16347776.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|410119452|emb|CCM90401.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
Length = 418
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPARRQNLLFSATFSDEI 194
>gi|421909360|ref|ZP_16339178.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410116748|emb|CCM81803.1| ATP-dependent RNA helicase RhlE [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 463
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIQNEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPARRQNLLFSATFSDEI 194
>gi|395227497|ref|ZP_10405823.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|421844472|ref|ZP_16277630.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|424728799|ref|ZP_18157404.1| atp-dependent rna helicase [Citrobacter sp. L17]
gi|394718825|gb|EJF24446.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. A1]
gi|411774627|gb|EKS58117.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|422896670|gb|EKU36452.1| atp-dependent rna helicase [Citrobacter sp. L17]
Length = 448
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPAKRQNLLFSATFSDDI 194
>gi|392422527|ref|YP_006459131.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
gi|390984715|gb|AFM34708.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
Length = 441
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 112/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG D ++ +L+ ++ +P+ +Q A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRML-DLGFADELDQLFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKKRQTLLFSATFSEPIRQMARELLRD 203
>gi|423687836|ref|ZP_17662639.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
gi|371493024|gb|EHN68628.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
Length = 445
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 142/276 (51%), Gaps = 26/276 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG + ++++L QN +P++IQ A P + GK + + ++GSGKTLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLAHQNIKKPTEIQRKAVPVAIAGKDVLASSKTGSGKTLAFVLPMLH- 61
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + + SK+ PR VILAPT ELA QV S+ R++ G+ + + ++TGG Q
Sbjct: 62 -KSLKTKSFSKN---DPRAVILAPTRELAKQVYSHLRAML-GGLTYDATLITGGENFNDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI-SS 448
+ L++ ++ATPGR ++ L L L ILDE D + D F LQ + ++
Sbjct: 117 VNALRKHPKFIVATPGRLADHLEHQSLYLDGLETLILDEADRML-DLGFAEHLQKIHKAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
S Q L +ATL + NK D P RIS GL S D+ D T
Sbjct: 176 SHRRRQTLMFSATLDHDAVNKFAGNMLD-----NPK--RISVGL-------SNDEHKDIT 221
Query: 509 PETAF---LNKKSALL-QLIEKSPVSKTIVFCNKKS 540
L+ K A+L ++IE + ++F +S
Sbjct: 222 QRFYLCDHLDHKQAILNKIIETEDYFQIMIFTATRS 257
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 141/273 (51%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + P+ IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 15 SFTSLGLSAPILKAVANKGYETPTPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 74
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P +S VV GG
Sbjct: 75 LLSRG-----NRAQAKKVRALVLTPTRELAAQVAESVDTYGKY-LPLKSAVVFGGVGIGP 128
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L +G + L +LDE D + D F ++ ++ +
Sbjct: 129 QISKLGKGVDILVATPGRLLDLYNQGAVNFNQLEVLVLDEADRML-DMGFIHDIKKILRA 187
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT +I KL + V ++ + P + + +E+++ Q
Sbjct: 188 LPAKRQNLMFSATFSDDI-RKLAKGLVNNPVEISVTP-RNATAKSVEQYIYMVDQKQ--- 242
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +AL+ LI+++ + +VF K
Sbjct: 243 ---------KTAALIHLIKQNDWQQVLVFSRTK 266
>gi|392541962|ref|ZP_10289099.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 427
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + ++++L+ NF + IQ A P V +G + Q+G+GKT A+ LP+IQ
Sbjct: 3 TFSSFSFAQPLLDALQDINFHTLTPIQQAAIPAVRQGSDVLATAQTGTGKTAAFALPIIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + E Q +PR +ILAPT ELA Q+ +NC + +K + + GG
Sbjct: 63 KLLEAEAQ-------STPRALILAPTRELAEQIANNCATFAKY-TDLKVQALFGGVNANG 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L++GVD+L+ATPGR + I+ G + L N++ +LDE D + D F +Q +I
Sbjct: 115 QAERLKQGVDILVATPGRLLDHIRLGNVTLSNVKHLVLDEADRML-DMGFITDMQKIIEL 173
Query: 449 SPVTAQYLFVTATLP 463
Q L +AT P
Sbjct: 174 VDKQKQLLLFSATFP 188
>gi|85708956|ref|ZP_01040022.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85690490|gb|EAQ30493.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 497
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 24/280 (8%)
Query: 263 DFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAY 322
D +R +F +LG S ++++++ + P+ IQA A P V+ K I Q+G+GKT ++
Sbjct: 31 DILNRMTFADLGLSPELLKAVEDAGYTEPTAIQAEAIPAVLMMKDLIGIAQTGTGKTASF 90
Query: 323 LLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV--PFRSMVV 380
+LP+I ++ + + PR +IL PT ELA+QV N K G + ++
Sbjct: 91 VLPMI------DVMAAGRRRALMPRSLILEPTRELAAQVAEN---FEKYGANHDLKMALL 141
Query: 381 TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440
GG + QL+ L EGVDVLIATPGR M L + G + L ++DE D + D F
Sbjct: 142 IGGVQMGDQLKTLDEGVDVLIATPGRLMDLFERGKILLNGCELLVIDEADRML-DMGFIP 200
Query: 441 ALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500
++ + P T Q + +AT+P I + + K + + + F V
Sbjct: 201 DIEFICDKLPETRQTMLFSATMPAPIEKLAKKFLSNPKRIETTRAATTNKDITAFKVPVK 260
Query: 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
Q K+ L L+ V I+F N+K+
Sbjct: 261 ARQ------------KRDTLEWLLANDQVETAIIFANRKT 288
>gi|380011998|ref|XP_003690078.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 566
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHSS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK S LL+ I +KTIVF K
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVFIETK 364
>gi|261218712|ref|ZP_05932993.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261314321|ref|ZP_05953518.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|261317582|ref|ZP_05956779.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261321790|ref|ZP_05960987.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|265988616|ref|ZP_06101173.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340790566|ref|YP_004756031.1| ATP-dependent RNA helicase [Brucella pinnipedialis B2/94]
gi|260923801|gb|EEX90369.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M13/05/1]
gi|261294480|gb|EEX97976.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M644/93/1]
gi|261296805|gb|EEY00302.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis B2/94]
gi|261303347|gb|EEY06844.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M163/99/10]
gi|264660813|gb|EEZ31074.1| DEAD/DEAH box helicase domain-containing protein [Brucella
pinnipedialis M292/94/1]
gi|340559025|gb|AEK54263.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella
pinnipedialis B2/94]
Length = 482
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|91783626|ref|YP_558832.1| ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans LB400]
gi|91687580|gb|ABE30780.1| Putative ATP-dependent RNA helicase, rhlE [Burkholderia xenovorans
LB400]
Length = 523
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +Q A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 44 SFALLGLIDPLLRNVQDLNYQTPTPVQVKAIPAVLGGRDVMAAAQTGTGKTAGFALPLLQ 103
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + K G+ R + GG
Sbjct: 104 RLVQHG----PAVSSNRARVLVLVPTRELAEQVLQSFIDYGK-GLDLRFLAAYGGVSINP 158
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +QL ++ +LDE D + D F L ++ ++
Sbjct: 159 QMMKLRKGVDVLVATPGRLLDLNRQNAVQLDQVQTLVLDEADRML-DLGFARELNAVFAA 217
Query: 449 SPVTAQYLFVTATLPVEI 466
PV Q L +AT +I
Sbjct: 218 LPVRRQTLLFSATFTDDI 235
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 19/275 (6%)
Query: 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPV 326
+K FKE G ++E++ +L + IQA++FPP++EG+ + A Q+G+GKT A+ LP+
Sbjct: 3 KKEFKEFGFHSKILENISNTGYLHATPIQALSFPPILEGRDVMGAAQTGTGKTAAFTLPL 62
Query: 327 IQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
+ R+ + S S + P R+++L PT ELA Q+ N + + G+P R+ ++ GG
Sbjct: 63 LNRMIPK--ASFSTSPAKHPVRMLVLTPTRELAEQISKNVIAYAD-GLPLRTSLIYGGVD 119
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q L G D++IATPGR + +++ + L + ILDE D + D F L +
Sbjct: 120 FNAQKLELMRGADIVIATPGRLLDHVEQRTINLNQVEFLILDEADRML-DMGFMPDLLKI 178
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQE 504
++ P Q L +AT I + + D ++ + S +E +
Sbjct: 179 LAQLPSRRQSLLYSATFSDNIRSLAQKFLHDPVEITVASNNSTASTITQEIFSVSEAE-- 236
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +ALL L+ + I+F N+K
Sbjct: 237 -----------KNAALLYLLASRNFNNVIIFSNRK 260
>gi|398379083|ref|ZP_10537228.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397723550|gb|EJK84044.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 580
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 21/272 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L + NF P+ IQA A P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 46 FHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEM 105
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ + + + R +ILAPT EL +Q+ N + + R VV GG Q
Sbjct: 106 L----LKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRK-TALRINVVVGGASINKQ 160
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ G D+L+ATPGR + LI L L + +LDE D + D F L+ +
Sbjct: 161 QLQLERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQML-DLGFIHDLRKISKMV 219
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q + +AT+P I + E + KV V PG + + +E+++ SG
Sbjct: 220 PAKRQTMLFSATMPKTIADLAAEYLTNPVKVEVSPPG--KAADKVEQYVHFVSGQN---- 273
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K L + I +P + +VF K
Sbjct: 274 -------HKTEILKESISANPDGRAMVFLRTK 298
>gi|283833909|ref|ZP_06353650.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
gi|291070581|gb|EFE08690.1| ATP-dependent RNA helicase RhlE [Citrobacter youngae ATCC 29220]
Length = 447
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLVTHQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPAKRQNLLFSATFSDDI 194
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 5/202 (2%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+ ++F+ G ++ +L Q + +P+ IQA A P V+ GK + A Q+G+GKT + LP
Sbjct: 13 AEQTFESFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 72
Query: 326 VIQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+IQRL L S S + P R ++L PT ELA QV N +K RS VV GG
Sbjct: 73 IIQRLL--PLANASASPARHPVRALMLTPTRELADQVYDNVARYAKH-TDLRSTVVFGGV 129
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q + L+ GV++L+ATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 130 DMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRML-DMGFLPDLQR 188
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 189 IINLLPAQRQTLLFSATFSPEI 210
>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
mellifera]
Length = 566
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHSS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK S LL+ I +KTIVF K
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVFIETK 364
>gi|409200626|ref|ZP_11228829.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 427
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 9/195 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F + ++++L+ NF + IQ A P V +G + Q+G+GKT A+ LP+IQ
Sbjct: 3 TFSSFSFAQPLLDALQDINFHTLTPIQQAAIPAVRQGSDVLATAQTGTGKTAAFALPIIQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + E Q +PR +ILAPT ELA Q+ +NC + +K + + GG
Sbjct: 63 KLLEAEAQ-------STPRALILAPTRELAEQIANNCATFAKY-TDLKVQALFGGVNANG 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L++GVD+L+ATPGR + I+ G + L N++ +LDE D + D F +Q +I
Sbjct: 115 QAERLKQGVDILVATPGRLLDHIRLGNVTLSNVKHLVLDEADRML-DMGFITDMQKIIEL 173
Query: 449 SPVTAQYLFVTATLP 463
Q L +AT P
Sbjct: 174 VDKQKQLLLFSATFP 188
>gi|423119382|ref|ZP_17107066.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
gi|376398561|gb|EHT11185.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5246]
Length = 466
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q +L P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYLEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLIQKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRSGVDVLVATPGRLLDLEHQNAVSLDKVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPAKRQNLLFSATFSDDI 194
>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
Length = 500
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 140/271 (51%), Gaps = 15/271 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ ++ +++ Q + P+ IQA A P V++G + Q+G+GKT + LP++Q
Sbjct: 2 NFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + S+ + R ++L PT ELA+QV + R+ K +P SMV+ GG +
Sbjct: 62 RLSASKPVRDSRGRI-AVRALVLTPTRELAAQVEESVRAYGKY-LPLTSMVMFGGVGMQP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + +G L L ++ +LDE D + D F ++ +++
Sbjct: 120 QIDRLRKGVDILVATPGRLLDHHGQGTLDLSQVQILVLDEADRML-DMGFIHDIKKVLAV 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + D +++ P + +E + + D + K
Sbjct: 179 LPQKKQSLLFSATFSDEI-----KALAD-RLLNQPAL------IEVARRNATADTIAQKV 226
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK L LI + + +VF K
Sbjct: 227 HPVGREKKKELLAHLIRQGDWHQVLVFTRMK 257
>gi|455643914|gb|EMF23035.1| ATP-dependent RNA helicase RhlE [Citrobacter freundii GTC 09479]
Length = 448
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPAKRQNLLFSATFSDDI 194
>gi|350424793|ref|XP_003493914.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 566
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 108 TFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 167
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + G P ++LAPT ELA Q+ R+ + GG +
Sbjct: 168 HINSQPKLG----RKDGPIALVLAPTRELAQQIQQVADDFGHSS-GIRNTCLYGGAPKGA 222
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 223 QARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 281
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G +++ ++D D E +
Sbjct: 282 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLAANHNILQIIDVCQDYEKE- 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK S LL+ I +KTIVF K
Sbjct: 340 -------NKLSTLLKEIMAESENKTIVFIETK 364
>gi|350412507|ref|XP_003489671.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 619
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 18/272 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 116 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 175
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP--FRSMVVTGGFRQK 387
+ + + + P +ILAPT ELA Q+ + S G+ R+ + GG +
Sbjct: 176 INHQP----RLNRNDGPIALILAPTRELAQQIQ---QVASDFGISSQVRNTCIFGGAPKG 228
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q +L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 229 PQARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVE 287
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 288 QIRPDRQTLMWSATWPKEVRNLAEEFLTD--------YIQINIGSLQLAANHNILQIVDV 339
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E K LL+ I P +KTI+F K
Sbjct: 340 CEEYEKEGKLMKLLEEISNEPENKTIIFVETK 371
>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase [Syntrophobotulus glycolicus DSM 8271]
gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
DSM 8271]
Length = 382
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 27/275 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL ++++LK + + P+ IQ A P V++G+ + Q+G+GKT A+ +P++Q
Sbjct: 3 FEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLLQI 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L +E + + T R +ILAPT ELA Q N R+ K + + V+ GG Q Q
Sbjct: 63 LSRERINERAPRTI---RALILAPTRELALQTGENLRAYGKY-LGIKHTVIFGGVSQDAQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ GVD+L+ATPGR + L+ +G ++L +++ +LDE D + D F ++ +++
Sbjct: 119 TRAMKAGVDILVATPGRLLDLMGQGYVRLDHIKLLVLDEADRML-DMGFAHDMKRILAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG-----PGMHRISPGLEEFLVDCSGDQE 504
P Q L +AT+P P+ K + G P ++P V + D
Sbjct: 178 PAAKQTLLFSATMP-----------PEMKAMAGAILSNPVKIEVAP------VSSTADTI 220
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK+ L++L+ V +VF K
Sbjct: 221 DQSVYFVEKSGKKALLIELLRNQSVDSALVFTRTK 255
>gi|78779495|ref|YP_397607.1| DEAD/DEAH box helicase-like [Prochlorococcus marinus str. MIT 9312]
gi|78712994|gb|ABB50171.1| ATP-dependent RNA helicase CsdA [Prochlorococcus marinus str. MIT
9312]
Length = 593
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 128/251 (50%), Gaps = 19/251 (7%)
Query: 225 EKSGTKIDRGWRSGG-------SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSD 277
+K G +D G I NL+ TD Q + S D + F + G +
Sbjct: 4 KKDGNSVDNGQEKSQHDDASLLEIKNLE-NKTDIKSQPLEISIGND--NENGFLDFGFNQ 60
Query: 278 YMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337
++ SL + + P+ IQ A P ++ G+ + Q+G+GKT A+ LP+I++L
Sbjct: 61 SILNSLSNKGYKNPTPIQKAAIPELMLGRDLLGQAQTGTGKTAAFALPLIEKL------- 113
Query: 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV 397
+ + + +V+++ PT ELA+QV + +S S F+++ + GG + Q+ L+ V
Sbjct: 114 -ADNKELNAKVLVMTPTRELATQVAESFKSYSSESTNFKTIAIYGGTDYRNQIYALKRKV 172
Query: 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLF 457
DV++ TPGR M I++G ++ ++ C +LDE D + N F ++ +I P Q +
Sbjct: 173 DVVVGTPGRIMDHIRQGTFKVNSINCLVLDEADEMLN-MGFLEDIEWIIDQLPKNKQMVL 231
Query: 458 VTATLPVEIYN 468
+AT+P EI N
Sbjct: 232 FSATMPNEIRN 242
>gi|237730773|ref|ZP_04561254.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
gi|226906312|gb|EEH92230.1| ATP-dependent RNA helicase RhlE [Citrobacter sp. 30_2]
Length = 448
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPTKRQNLLFSATFSDDI 194
>gi|424817011|ref|ZP_18242162.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
gi|325498031|gb|EGC95890.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ECD227]
Length = 453
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
+ P Q L +AT +I N
Sbjct: 175 TKLPAKRQNLLFSATFSDDIKN 196
>gi|403527959|ref|YP_006662846.1| DEAD/DEAH box helicase [Arthrobacter sp. Rue61a]
gi|403230386|gb|AFR29808.1| DEAD-box ATP-dependent RNA helicase CshA [Arthrobacter sp. Rue61a]
Length = 570
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 3/200 (1%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
KSF + ++ESL P IQAM P + G I ++G+GKTL + +
Sbjct: 34 IEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGI 93
Query: 325 PVIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
P +QR+ + G +K + G+P+ +++ PT ELA QV ++ ++ S+ R + GG
Sbjct: 94 PALQRVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRK-RNARIATIYGG 152
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q++ LQ+GV++++ TPGR + L K+ L L N++ ILDE D + D F ++
Sbjct: 153 RAYEPQIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEML-DLGFLPDVE 211
Query: 444 SLISSSPVTAQYLFVTATLP 463
+LI+ +P Q L +AT+P
Sbjct: 212 TLIAGTPAVRQTLLFSATMP 231
>gi|397688314|ref|YP_006525633.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
gi|395809870|gb|AFN79275.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
Length = 441
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 6/194 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ +L+ ++ P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIEPLLRTLESLDYTTPTPVQAKAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL QE + TS S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTQEG----APVTSNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ ++ ++ +LDE D + D F L + +
Sbjct: 117 QMMALRKGVDVLVATPGRLLDLYRQNAVKFAQVQALVLDEADRML-DLGFSQELTDVFCA 175
Query: 449 SPVTAQYLFVTATL 462
P Q L +AT
Sbjct: 176 LPRKRQTLLFSATF 189
>gi|393774320|ref|ZP_10362685.1| ATP-dependent RNA helicase RhlE [Novosphingobium sp. Rr 2-17]
gi|392720176|gb|EIZ77676.1| ATP-dependent RNA helicase RhlE [Novosphingobium sp. Rr 2-17]
Length = 477
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 6/199 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG ++ ++ +L+ + + PS IQ A PP++EG+ + Q+G+GKT A+ LP + R
Sbjct: 4 FSELGLAEPILRALEVKGYTDPSPIQRKAIPPLLEGRDLLGIAQTGTGKTAAFALPSLHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E + +G R+++L+PT ELA+Q+ N R +K + V GG Q
Sbjct: 64 LISEP---QPRQNAGC-RMLVLSPTRELAAQIAENMRGYAKF-LNLSVQCVFGGVPAGKQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ GVD+L+ATPGR + LI L L ++ +LDE D + D F V L+ + +
Sbjct: 119 ARALERGVDILVATPGRLLDLIDSRALTLRHVEIFVLDEADQMM-DLGFIVPLKRVAAML 177
Query: 450 PVTAQYLFVTATLPVEIYN 468
P T Q LF +AT+P I +
Sbjct: 178 PKTRQSLFFSATMPQSIAD 196
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ +++++K Q + P+ IQ A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTNLGLNESLLKAIKDQGYTSPTPIQKQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL + K RV++L PT ELA+QV + ++ K + + S VV GG
Sbjct: 62 RLSETH----PKMGKKQIRVLVLTPTRELAAQVAESIKTYGKY-MKYTSTVVYGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL ++ GVD++IATPGR + + + + L +LDE D + D F ++ L+
Sbjct: 117 QLATIRRGVDIVIATPGRLLDIAGQQGIDFSALETLVLDEADRML-DMGFIHDIKKLMKM 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +EI
Sbjct: 176 MPKERQTLLFSATFSLEI 193
>gi|119962035|ref|YP_948481.1| ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
gi|119948894|gb|ABM07805.1| putative ATP-dependent RNA helicase [Arthrobacter aurescens TC1]
Length = 566
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 111/200 (55%), Gaps = 3/200 (1%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
KSF + ++ESL P IQAM P + G I ++G+GKTL + +
Sbjct: 34 IEEKSFADFNVRADIVESLADAGITHPFPIQAMTLPVALSGHDIIGQAKTGTGKTLGFGI 93
Query: 325 PVIQRLRQEELQGLSK-STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
P +QR+ + G +K + G+P+ +++ PT ELA QV ++ ++ S+ R + GG
Sbjct: 94 PALQRVAGRDDAGYAKLAVPGAPQALVIVPTRELAVQVANDLQAASRK-RNARIATIYGG 152
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q++ LQ+GV++++ TPGR + L K+ L L N++ ILDE D + D F ++
Sbjct: 153 RAYEPQIDALQKGVEIVVGTPGRLIDLYKQKHLSLKNVKMVILDEADEML-DLGFLPDVE 211
Query: 444 SLISSSPVTAQYLFVTATLP 463
+LI+ +P Q L +AT+P
Sbjct: 212 TLIAGTPAVRQTLLFSATMP 231
>gi|391229094|ref|ZP_10265300.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
gi|391218755|gb|EIP97175.1| DNA/RNA helicase, superfamily II [Opitutaceae bacterium TAV1]
Length = 539
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 106/198 (53%), Gaps = 12/198 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +D + + + P+ IQA A P V+EG+ + Q+G+GKT A+ LPV+
Sbjct: 135 AFSKLGLNDAIAFAAAEMGYTEPTPIQAQAVPLVLEGRDVTGSAQTGTGKTAAFALPVLH 194
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G R ++L PT ELA QV + SK + +V GG
Sbjct: 195 RL----------GAHGRLRCLVLEPTRELALQVEEAFQKYSKY-TDLTTTIVYGGVGYGK 243
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E+LQ GVDVL ATPGR + +++G L L ++ ILDEVD + D F ++ ++
Sbjct: 244 QREDLQRGVDVLAATPGRLLDHLEQGTLTLDSIEILILDEVDRML-DMGFLPDVKRIVQQ 302
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +ATLP E+
Sbjct: 303 CPRERQTLFFSATLPPEL 320
>gi|319408422|emb|CBI82077.1| ATP-dependent RNA helicase [Bartonella schoenbuchensis R1]
Length = 470
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 142/278 (51%), Gaps = 30/278 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S+ +I++++ + P+ IQ+ P V++ K + Q+G+GKT +++LP++
Sbjct: 7 SFDDLGLSEKVIKAVRSAGYTAPTPIQSETIPHVLQRKDVLGIAQTGTGKTASFVLPMLT 66
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--TGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R VV GG
Sbjct: 67 LLEK------GRARARMPRTLILEPTRELAAQVQEN---FDKYGLNHRLNVVLLIGGVSF 117
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L++G DVLIATPGR + + G L LI ++DE D + D F ++ +
Sbjct: 118 EDQNRKLEQGADVLIATPGRLLDHFERGKLLLIGTEILVIDEADRML-DMGFIPDIERIC 176
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503
+P T Q LF +AT+ EI KL E F P C V + + + LV SG +
Sbjct: 177 KLTPFTRQTLFFSATMAPEI-TKLTEQFLHSPICVEVTKAS--STATTITQRLVK-SGSK 232
Query: 504 ESDKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L +LI E + I+FCN+K
Sbjct: 233 AWD---------KRAVLRELIDNEGDELKNAIIFCNRK 261
>gi|420369243|ref|ZP_14869968.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
gi|391321569|gb|EIQ78292.1| ATP-dependent RNA helicase rhlE [Shigella flexneri 1235-66]
Length = 447
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITHQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPAKRQNLLFSATFSDDI 194
>gi|114563324|ref|YP_750837.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114334617|gb|ABI71999.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 439
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 136/272 (50%), Gaps = 23/272 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D ++ +L + +P+ IQ P +++GK+ + A Q+G+GKT +++LP+++R
Sbjct: 3 FSTLGLRDTIVNALHEVGYSQPTPIQQQTIPVILKGKNLLAAAQTGTGKTASFVLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L E+Q + R +IL PT ELA QV +N +K +P S+ + GG +K Q
Sbjct: 63 LADTEIQRAKRI-----RALILTPTRELAVQVHANVVQYAK-HLPLTSIAIYGGVDEKPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVD+L+ATPGR + L + + + +LDE D + D F + +I
Sbjct: 117 KQALIDGVDILVATPGRLLDLYTQRAVHFDEVEVLVLDEADRML-DMGFIEDINKIIDKL 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRIS-PGLEEFLVDCSGDQESDKT 508
P Q L +ATL ++ L + V + R S P +E++L D
Sbjct: 176 PSERQSLLFSATLSNQV-RALAKTAIKRPVEISVIADRDSAPKIEQWLTTVDKD------ 228
Query: 509 PETAFLNKKSALL-QLIEKSPVSKTIVFCNKK 539
KKSALL LI+ ++ ++F K
Sbjct: 229 -------KKSALLSHLIKTEEWNQALIFIETK 253
>gi|398964629|ref|ZP_10680406.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398148015|gb|EJM36703.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ SL++ + P+ +QA A P V+ G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFATLGLIEPLLRSLEKLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E K + S R +IL PT ELA QV + R ++ +P R+ V GG
Sbjct: 62 LLAMEG----PKVAANSARALILVPTRELAEQVHESVRQYAE-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L+++ L+L L+ +LDE D + D F L ++
Sbjct: 117 QMMKLRGGVDVLVATPGRLIDLLRQNALKLDQLQTLVLDEADRML-DLGFSEELANIYRM 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPKKRQTLLFSATFSDDI 193
>gi|365105460|ref|ZP_09334707.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
gi|363643475|gb|EHL82793.1| ATP-dependent RNA helicase rhlE [Citrobacter freundii 4_7_47CFAA]
Length = 448
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + G S+ R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITNQPHGKSRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVLIATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 177 LPAKRQNLLFSATFSDDI 194
>gi|405373066|ref|ZP_11027919.1| Cold-shock DEAD-box protein A [Chondromyces apiculatus DSM 436]
gi|397087830|gb|EJJ18847.1| Cold-shock DEAD-box protein A [Myxococcus sp. (contaminant ex DSM
436)]
Length = 798
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 28/292 (9%)
Query: 248 PTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKS 307
P + P + +Y AD F ++ S+ + ++L + + P+ +QA AF P +EGK
Sbjct: 7 PDEAPTRPAEYIAD------IGFDDMNLSEPIRQALAERGYTNPTPVQARAFRPAMEGKD 60
Query: 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367
I+ ++G+GKT A+ LP+++++ +E + R +IL PT ELA QV +
Sbjct: 61 LIVRSKTGTGKTAAFGLPLLEKIPADERR---------VRALILCPTRELAIQVADELKL 111
Query: 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
L K + + GG K Q + L+EG +++ TPGR I G L+L A+LD
Sbjct: 112 LGKIK-GLKVAAIYGGASMKQQEDALEEGTPIIVGTPGRVFDHINRGNLKLDACDHAVLD 170
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D + N + F + ++ P T Q L +AT+P +I N + + + ++ G
Sbjct: 171 EADEMLN-QGFYEEVTRILDRLPKTRQVLLFSATVPTDIQNLIARYTTNAETLLLSGDVF 229
Query: 488 ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ D SD P K L+ ++EK I+FCN +
Sbjct: 230 TVEHIHHIRYDV-----SDAFP------KPRNLIYVLEKEEPQNAIIFCNTR 270
>gi|392538647|ref|ZP_10285784.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 465
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +ILAPT ELA QV N +K S VV GG +
Sbjct: 62 RLSTG-----PKAKSNHVRALILAPTRELALQVSENVEEYAKHS-NVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ +I+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRIIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 MPAKRQNLMFSATFSDDI 192
>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
Length = 469
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 107/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ +++ + + P+ IQA A P ++G+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVRSEGYESPTPIQAQAIPFALDGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PTDRQTLLFSAT 190
>gi|295680824|ref|YP_003609398.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295440719|gb|ADG19887.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 481
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG D ++ +++ N+ P+ +QA A P V+ GK + A Q+G+GKT + LP++Q
Sbjct: 2 SFASLGLIDPLLRNVQDLNYQIPTPVQAKAIPAVLGGKDVMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q +S RV++L PT ELA QVL + + + G+ R + GG
Sbjct: 62 RLVQRG----PAVSSNRARVLVLVPTRELAEQVLQSFIAYGR-GLDLRFLAAYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVL+ATPGR + L ++ +Q ++ +LDE D + D F L ++ ++
Sbjct: 117 QMMKLRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRML-DLGFARELNAVFAA 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPAQRQTLLFSATFTDDI 193
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 5/202 (2%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+ ++F+ G ++ +L Q + +P+ IQA A P V+ GK + A Q+G+GKT + LP
Sbjct: 52 AEQTFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 111
Query: 326 VIQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+IQRL + S S + P R ++L PT ELA QV N +K RS VV GG
Sbjct: 112 IIQRLL--PMASASASPARHPVRALMLTPTRELADQVYDNVARYAKH-TDLRSTVVFGGV 168
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q + L+ GV++L+ATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 169 DMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRML-DMGFLPDLQR 227
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 228 IINLLPAQRQTLLFSATFSPEI 249
>gi|218549636|ref|YP_002383427.1| ATP-dependent RNA helicase RhlE [Escherichia fergusonii ATCC 35469]
gi|218357177|emb|CAQ89812.1| RNA helicase [Escherichia fergusonii ATCC 35469]
Length = 454
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
+ P Q L +AT +I N
Sbjct: 175 TKLPAKRQNLLFSATFSDDIKN 196
>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
Length = 527
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 140/273 (51%), Gaps = 15/273 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + +++++ + P+ IQA A PP +EG+ + Q+G+GKT ++ LP+I
Sbjct: 4 FTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + ++ + PR ++L PT ELA+QV N + +K + ++ GG K Q
Sbjct: 64 LAR------GRARARMPRSLVLCPTRELAAQVAENFDTYTKH-LKLTKALLIGGVSFKEQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + + G L L ++ ++DE D + D F ++ + S +
Sbjct: 117 DQLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRML-DMGFIPDIERIFSLT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + + S +E+ +V ++ +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSAPERIEVARQASASETIEQHVVLFKASRKDREAS 235
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKKS 540
E K++AL LI E ++ I+FCN+KS
Sbjct: 236 E-----KRTALRALINAEGEKLTNGIIFCNRKS 263
>gi|188581754|ref|YP_001925199.1| DEAD/DEAH box helicase [Methylobacterium populi BJ001]
gi|179345252|gb|ACB80664.1| DEAD/DEAH box helicase domain protein [Methylobacterium populi
BJ001]
Length = 506
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 10/199 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F + G + ++ +L+ ++ P+ IQA A PP +EG+ Q+G+GKT A+ LP++ R
Sbjct: 4 FTDFGLAQPVLRALEEAGYVTPTPIQAQAVPPAMEGRDLCGIAQTGTGKTAAFALPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG--VPFRSMVVTGGFRQK 387
L E + + RV++L+PT ELASQ+ S S G +P+ + VV GG
Sbjct: 64 LSLENRRAPRRGC----RVLVLSPTRELASQI---AESFSDYGRHLPYTNTVVFGGVNIN 116
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + GVD+L+ATPGR + L+ L L + +LDE D + D F AL+ ++
Sbjct: 117 RQERAIAPGVDILVATPGRLIDLVDRRALTLDGVEILVLDEADQML-DLGFIHALKRIVK 175
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P I
Sbjct: 176 MLPARRQSLFFSATMPKNI 194
>gi|374366617|ref|ZP_09624693.1| RNA helicase [Cupriavidus basilensis OR16]
gi|373101750|gb|EHP42795.1| RNA helicase [Cupriavidus basilensis OR16]
Length = 577
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 113/207 (54%), Gaps = 19/207 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF ELG SD ++ ++ Q + P+ IQA A P +++G + Q+G+GKT + LP+
Sbjct: 12 SFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPL-- 69
Query: 329 RLRQEELQGLSKSTSGSP---------RVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379
LQ LS+S++G R ++L PT ELA+QV + R+ K + RSMV
Sbjct: 70 ------LQLLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKY-LKLRSMV 122
Query: 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439
+ GG Q+E L+ GVD+++ATPGR + + + + L ++ +LDE D + D F
Sbjct: 123 MFGGVGINPQIEQLKRGVDIVVATPGRLLDHLSQRTIDLSHVEMLVLDEADRML-DMGFI 181
Query: 440 VALQSLISSSPVTAQYLFVTATLPVEI 466
++ +++ P Q L +AT EI
Sbjct: 182 HDIRKILNVLPPKRQNLLFSATFSDEI 208
>gi|242004721|ref|XP_002423227.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212506206|gb|EEB10489.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 579
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 135/274 (49%), Gaps = 18/274 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
K F+E G DY+++ +KRQ F P+ IQA +P + G++ + ++GSGKTL+Y+LP I
Sbjct: 99 KHFREAGFPDYVLKEIKRQGFSEPTVIQAQGWPIALSGRNLVGIAKTGSGKTLSYILPAI 158
Query: 328 QRL-RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
+ Q LQ P V++LAPT ELA Q+ R+ + GG ++
Sbjct: 159 VHINHQPRLQ-----RGDGPIVLVLAPTRELAQQIKEVTEDFGHSS-GIRNTCIFGGAKR 212
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+Q +L++GV+++IATPGR + + G L +LDE D + D FE ++ +
Sbjct: 213 LSQARDLEKGVEIVIATPGRLLDFLDCGKTNLKRTTYLVLDEADRML-DMGFEPQIRKIF 271
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQES 505
Q L +AT P + N L + F + + G ++S ++D D E
Sbjct: 272 EQIKPDRQVLMWSATWPKVVRN-LAKEFLNDYTQINVGSLQLSANHNILQIIDVCQDSEK 330
Query: 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++ K S LL+ I +KTIVF K
Sbjct: 331 ER--------KLSTLLKEIMSEKENKTIVFIETK 356
>gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281225|gb|ABR89635.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 448
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 2/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++ ++ + P+ IQA A P V+ G + Q+G+GKT + LP++
Sbjct: 2 SFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILH 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL S S R ++L PT ELA+QV + R+ K + S V+ GG
Sbjct: 62 RLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKY-LNLNSAVIFGGVGINP 120
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVD+L+ATPGR + +++G + L +++ +LDE D + D F ++ ++++
Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRML-DMGFIKDIRRVLAA 179
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 180 LPKNRQNLLFSATFSNEI 197
>gi|158300606|ref|XP_320481.4| AGAP012045-PA [Anopheles gambiae str. PEST]
gi|157013241|gb|EAA00456.4| AGAP012045-PA [Anopheles gambiae str. PEST]
Length = 910
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 113/208 (54%), Gaps = 7/208 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E +Y++ +K+Q F RP+ IQ+ +P + G+ + Q+GSGKTLAY+LP +
Sbjct: 225 QNFEEGNFPEYVMTEIKKQGFPRPTAIQSQGWPIALSGRDMVGIAQTGSGKTLAYMLPGL 284
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP-FRSMVVTGGFRQ 386
+ ++ LS+ P V++LAPT ELA Q+ + R P R V GG +
Sbjct: 285 VHISHQKP--LSRGE--GPIVLVLAPTRELAQQIQTVVRDFGNHSKPNIRYTCVFGGALK 340
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ +L+ GV+V+IATPGR + ++ GI L +LDE D + D FE ++ ++
Sbjct: 341 GPQVRDLERGVEVVIATPGRLIDFLERGITNLRRCTYLVLDEADRML-DMGFEPQIRKIV 399
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVF 474
Q L +AT P E+ L E F
Sbjct: 400 EQIRPDRQVLMWSATWPKEV-QTLAEDF 426
>gi|406834597|ref|ZP_11094191.1| DEAD/DEAH box helicase [Schlesneria paludicola DSM 18645]
Length = 455
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 137/277 (49%), Gaps = 28/277 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG + ++ ++ + + P+ IQA A P V++G+ Q+G+GKT A+ LP+I
Sbjct: 12 SFADLGLCEPIVNAVTAEGYENPTPIQAQAIPHVMQGRDLFGCAQTGTGKTAAFSLPIIH 71
Query: 329 RLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
RL + G+ + + P R +ILAPT ELA Q+ ++C R +V GG Q
Sbjct: 72 RLMEA---GVPSAKARRPIRALILAPTRELAIQI-ADCILAYSQKTHIRHTLVFGGVSQV 127
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q+ LQ GVD++IATPGR L+ +G + L ++ +LDE D + D F ++ +
Sbjct: 128 PQVRALQRGVDIVIATPGRLCDLMGQGHVDLSHVETFVLDEADRML-DMGFIHDIRHIAE 186
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI ++ P I+P + +
Sbjct: 187 RVPKQRQTLFFSATMPREIREL------SSSLLRNPVAVEITP-----------VATAAE 229
Query: 508 TPETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
T E A NK L L+ +S V++++VF K
Sbjct: 230 TVEQAIFIVPQSNKPRLLHTLLAESAVTRSLVFTRTK 266
>gi|148559195|ref|YP_001258911.1| DEAD-box ATP dependent DNA helicase [Brucella ovis ATCC 25840]
gi|148370452|gb|ABQ60431.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella ovis
ATCC 25840]
Length = 482
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGIDHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
Length = 436
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 138/276 (50%), Gaps = 30/276 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ LG S+ ++ ++ + P+ IQ A P ++EG+ + Q+G+GKT A+ LP+I R
Sbjct: 4 FQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLIDR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L+ E+ + + K T R +ILAPT EL +Q+ N S K P R V GG Q
Sbjct: 64 LQAEKKKAVPKGT----RALILAPTRELVNQIAKNLISFLKH-TPLRVSSVVGGVSINGQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA---ILDEVDILFNDEDFEVALQSLI 446
++ L +G D+L+ATPGR + L+ + I+LR A +LDE D + D F AL+ +
Sbjct: 119 IKRLSKGTDILVATPGRLLDLVDR---EAIDLRTASYLVLDEADQML-DLGFIHALRRIA 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q L +AT+P +I N+L + + + P ++P +G
Sbjct: 175 GLVADKRQTLLFSATMPKQI-NELAQSY-----LRNPERVEVAP---------AGKTADK 219
Query: 507 KTPETAFLNKKSA---LLQLIEKSPVSKTIVFCNKK 539
T F++K S L+ + P ++VFC K
Sbjct: 220 VTQSVHFMDKNSKGDFLVDQLRDKPDGLSLVFCRTK 255
>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
Length = 549
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK+LG S +++++ Q + PS IQA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 3 TFKDLGLSAPILKAITAQGYDTPSPIQAKAIPAVLDGRDVMAAAQTGTGKTAGFTLPILQ 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + ++ R +IL PT ELA+QV + + K + S VV GG +
Sbjct: 63 LLSAGK-----RAQPNQVRTLILTPTRELAAQVGESVATYGKH-MSLSSAVVFGGVKINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR M L + ++ L +LDE D + D F ++ +IS
Sbjct: 117 QMMKLRRGVDVLVATPGRLMDLYSQNAVKFTYLEVLVLDEADRML-DMGFIHDIKRIISL 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 LPKRRQNLMFSATFSDDI 193
>gi|386288691|ref|ZP_10065831.1| DEAD/DEAH box helicase [gamma proteobacterium BDW918]
gi|385278246|gb|EIF42218.1| DEAD/DEAH box helicase [gamma proteobacterium BDW918]
Length = 431
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ + + PS IQA A P V+EG+ + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILSAVTDKGYDTPSAIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E ++ + R +IL PT ELA+Q+ N K +P RS VV GG +
Sbjct: 62 LLSRGE-----RANANQARALILTPTRELAAQIGENVAMYGK-NLPLRSTVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + ++ L +LDE D + D F ++ +++
Sbjct: 116 QMIKLRRGVDILVATPGRLLDLYNQNAVKFNQLEILVLDEADRML-DMGFIHDIRKILAV 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPKRRQNLMFSATFSGDI 192
>gi|416896375|ref|ZP_11926222.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|417118486|ref|ZP_11969004.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
gi|422800154|ref|ZP_16848652.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|323967399|gb|EGB62820.1| DEAD/DEAH box helicase [Escherichia coli M863]
gi|327253583|gb|EGE65212.1| putative ATP-dependent RNA helicase rhlE [Escherichia coli STEC_7v]
gi|386138020|gb|EIG79180.1| ATP-dependent RNA helicase RhlE [Escherichia coli 1.2741]
Length = 454
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
+ P Q L +AT +I N
Sbjct: 175 TKLPAKRQNLLFSATFSDDIKN 196
>gi|182677108|ref|YP_001831254.1| DEAD/DEAH box helicase [Beijerinckia indica subsp. indica ATCC
9039]
gi|182632991|gb|ACB93765.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 484
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 133/274 (48%), Gaps = 24/274 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S+ +++++ + P+ IQA A P + G+ + Q+G+GKT A+ LP++
Sbjct: 2 TFNELGLSEKVLQAVAATGYTSPTPIQAEAIPHALAGRDILGIAQTGTGKTAAFTLPMLS 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
RL Q ++ + PR +IL PT ELA+QV S ++ G+ + V + GG
Sbjct: 62 RLEQ------GRARARMPRTLILEPTRELAAQVEE---SFARYGINHKLNVALLIGGVSF 112
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 113 AEQENKIMRGADVLIATPGRLLDFSERGKLLLTGIEILVIDEADRML-DMGFIPDIERIC 171
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P T Q LF +AT+P EI +L E F + P ++ G S
Sbjct: 172 KLVPFTRQTLFFSATMPPEI-TRLTETF-----LHNPVRIEVARASSTATTITQGLVASA 225
Query: 507 KTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKK 539
P K+ L QLI + + I+FCN+K
Sbjct: 226 HGPA-----KRETLRQLIRGAENLKNAIIFCNRK 254
>gi|56460599|ref|YP_155880.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
gi|56179609|gb|AAV82331.1| ATP-dependent RNA helicase [Idiomarina loihiensis L2TR]
Length = 372
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +L S + +L RQ + + IQA A P V+ GK + A Q+G+GKT A+ P+++
Sbjct: 2 NFSDLALSPETLTALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTGKTTAFTAPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L+ E ++ + + RV+IL PT ELA+QV N +LS G+P V GG +
Sbjct: 62 LLKSNE-----RAKANTARVLILTPTRELAAQVGENVANLS-AGLPLNYAVAFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVD+L+ATPGR + L K+ ++ L +LDE D + D F ++++I
Sbjct: 116 QMMKLRKGVDILVATPGRLLDLYKQNAVRFPKLEVLVLDEADRML-DMGFIHDIKNIIKL 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPAKRQTLLFSATFSDDI 192
>gi|424038258|ref|ZP_17776881.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
gi|408894595|gb|EKM31248.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-02]
Length = 521
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 21/204 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L S PRV ++L PT ELA+QV N S+ +P S VV G
Sbjct: 63 L------------SNGPRVRGNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q+ L++G DVL+ATPGR M L + ++ L +LDE D + D F +
Sbjct: 110 GVKINPQMLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRML-DMGFIRDI 168
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ ++ P Q L +AT EI
Sbjct: 169 RKILELLPKQRQNLLFSATFSNEI 192
>gi|419231381|ref|ZP_13774170.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
gi|378081545|gb|EHW43497.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Escherichia coli DEC9B]
Length = 454
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 110/200 (55%), Gaps = 9/200 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G S R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRR-----SVRALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEI 466
+ P Q L +AT +I
Sbjct: 175 TKLPAKRQNLLFSATFSDDI 194
>gi|317124438|ref|YP_004098550.1| DEAD/DEAH box helicase [Intrasporangium calvum DSM 43043]
gi|315588526|gb|ADU47823.1| DEAD/DEAH box helicase domain protein [Intrasporangium calvum DSM
43043]
Length = 807
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 108/209 (51%), Gaps = 15/209 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++E L R P IQA P + GK + Q+GSGKTLA+ LP+I R
Sbjct: 342 FAALGLSERLVERLARDGITAPFPIQAATIPDALAGKDVLGRGQTGSGKTLAFGLPMITR 401
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + L+ + P ++L PT ELA QV L R +V GG TQ
Sbjct: 402 LVEAGLRRAPRR----PHALVLVPTRELAMQVSDALEPLVHVAG-LRHKLVAGGLSYTTQ 456
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVD+LIATPGR L++ G ++L ++R +LDE D + E+ + I++S
Sbjct: 457 IAALNKGVDILIATPGRLNDLLERGAVELDDIRITVLDEADHM-----AEMGFMAEITTS 511
Query: 450 ----PVTAQYLFVTATLPVEIYNKLVEVF 474
P Q L +ATL I + +VE +
Sbjct: 512 LDRIPAEGQRLLFSATLDNGI-DAIVERY 539
>gi|163843207|ref|YP_001627611.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
gi|163673930|gb|ABY38041.1| ATP-dependent RNA helicase DBP2 [Brucella suis ATCC 23445]
Length = 482
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|452749107|ref|ZP_21948877.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
gi|452006933|gb|EMD99195.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
Length = 440
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 6/208 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F LG + ++ +L ++ P+ +QA A P V++G+ + A Q+G+GKT + LP++Q
Sbjct: 2 TFASLGLIEPLLRTLDTLDYRTPTPVQAKAIPVVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL E +K S S R ++L PT ELA QV + R + +P R+ V GG
Sbjct: 62 RLTMEG----AKVASNSVRALVLVPTRELAEQVHESFRVYGQ-NLPLRTYAVYGGVSINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++G+DVL+ATPGR + L ++ + L+ +LDE D + D F L L ++
Sbjct: 117 QMMALRKGIDVLVATPGRLLDLYRQNAVGFAQLQALVLDEADRML-DLGFADELDQLFAA 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD 476
P Q L +AT I E+ D
Sbjct: 176 LPKKRQTLLFSATFSEPIRQMARELLRD 203
>gi|367013516|ref|XP_003681258.1| hypothetical protein TDEL_0D04630 [Torulaspora delbrueckii]
gi|359748918|emb|CCE92047.1| hypothetical protein TDEL_0D04630 [Torulaspora delbrueckii]
Length = 968
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 132/258 (51%), Gaps = 21/258 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF G S ++ ++ R+ F +P+ IQ P +++ + + ++GSGKT A++LP+I+
Sbjct: 115 SFPSFGLSKLILNNISRKGFHQPTPIQRKTIPLILQSRDIVGLARTGSGKTAAFILPMIE 174
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L+ S S+ R VIL+P+ ELA Q + S+ G RS+++TGG +
Sbjct: 175 KLK-------SHSSKVGARAVILSPSRELAMQTHKVFKDFSR-GTHLRSVLLTGGDSLEE 226
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + DV++ATPGRF+ L E L L ++ A+ DE D LF + FE L L+++
Sbjct: 227 QFGMMMSNPDVIVATPGRFLHLKVEMNLDLKSIEYAVFDESDRLF-EMGFEEQLNELLAA 285
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +ATLP + + + +V +IS LE + D+
Sbjct: 286 LPSNRQTLLFSATLPNSLVDFAKAGLTNPVLVRLDQESKISENLEMLFLSTKHDE----- 340
Query: 509 PETAFLNKKSALLQLIEK 526
+++ALL LI++
Sbjct: 341 -------REAALLYLIQE 351
>gi|338984023|ref|ZP_08633147.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium sp.
PM]
gi|338207051|gb|EGO95064.1| DEAD/DEAH box helicase domain-containing protein [Acidiphilium sp.
PM]
Length = 412
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 139/273 (50%), Gaps = 26/273 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S+ ++++L+ + +L P+ IQ A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 21 FASLGLSEPILKALEEKGYLNPTPIQEQAIPTVLMGRDVLGCAQTGTGKTASFTLPML-- 78
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ L G S++ + PR +IL PT ELA QV N K + ++ GG Q
Sbjct: 79 ---DILSG-SRARARMPRSLILEPTRELALQVAENFVQYGKH-LKLNHALLIGGESMGEQ 133
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + + + G L L ++R ++DE D + D F ++ ++S
Sbjct: 134 RDVLTRGVDVLIATPGRLIDIFERGGLLLSDVRVLVIDEADRML-DMGFIPDIERIVSLL 192
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q LF +AT+ EI +L + F P V P ++ + E L
Sbjct: 193 PTMRQTLFFSATMAPEI-RRLADAFLSNPKQITVSRPAT--VATTITEGL---------- 239
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
A +K+ AL +LI V +VFCN+K
Sbjct: 240 --SLVATHDKREALRRLIRTEDVQNALVFCNRK 270
>gi|222086716|ref|YP_002545250.1| ATP-dependent RNA helicase [Agrobacterium radiobacter K84]
gi|221724164|gb|ACM27320.1| ATP-dependent RNA helicase protein [Agrobacterium radiobacter K84]
Length = 556
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 21/272 (7%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++L + NF P+ IQA A P V++G+ I Q+G+GKT A+ LP+I+
Sbjct: 20 FHSLGLSKQIVDTLSQNNFATPTPIQAQAIPLVLQGRDLIGLAQTGTGKTAAFGLPIIEM 79
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ + + + R +ILAPT EL +Q+ N + + R VV GG Q
Sbjct: 80 L----LKDAKRPDNRTVRTLILAPTRELVNQIADNLKLFVRK-TALRINVVVGGASINKQ 134
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L+ G D+L+ATPGR + LI L L + +LDE D + D F L+ +
Sbjct: 135 QLQLERGTDILVATPGRLLDLISRRALSLGQVSYLVLDEADQML-DLGFIHDLRKISKMV 193
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPD-CKV-VMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q + +AT+P I + E + KV V PG + + +E+++ SG
Sbjct: 194 PAKRQTMLFSATMPKTIADLAAEYLTNPVKVEVSPPG--KAADKVEQYVHFVSGQN---- 247
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K L + I +P + +VF K
Sbjct: 248 -------HKTEILKESISANPDGRAMVFLRTK 272
>gi|77360862|ref|YP_340437.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76875773|emb|CAI86994.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Pseudoalteromonas haloplanktis TAC125]
Length = 466
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +IL PT ELA QV N +K S VV GG +
Sbjct: 62 RLSSG-----PKAKSNHVRALILTPTRELALQVSENVEEYAKHS-NVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 175 MPAKRQNLMFSATFSDEI 192
>gi|343084223|ref|YP_004773518.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342352757|gb|AEL25287.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 410
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 137/271 (50%), Gaps = 17/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L ++++L+ +N+ P+ IQA A P ++ + + + Q+G+GKT A+ LP+IQ
Sbjct: 2 TFEQLDLITPILKALQERNYKEPTAIQAQAIPKILAKRDILGSAQTGTGKTAAFSLPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E+ K S +I+ PT ELA Q+ N K + V+ GG +Q
Sbjct: 62 LLHTEKNNHKGKLAIKS---LIVTPTRELAIQIDENLAYYGKY-TKLKHAVIFGGVKQGA 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + LI +G ++L ++ +LDE D + D F ++ L+
Sbjct: 118 QVNELRRGVDILVATPGRLLDLINQGFIKLDQIKIFVLDEADRML-DMGFINDIKKLLKL 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P I V K++ P ++P V + + K
Sbjct: 177 LPSKRQSLFFSATMPDNI------VSLAGKILTDPVKIEVNP------VSSAAETVKQKV 224
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T +KK L ++E + + ++F K
Sbjct: 225 YYTNKSSKKDLLFHILENKEIDQVLLFSRTK 255
>gi|271967261|ref|YP_003341457.1| DEAD/DEAH box helicase [Streptosporangium roseum DSM 43021]
gi|270510436|gb|ACZ88714.1| DEAD/DEAH box helicase domain-containing protein [Streptosporangium
roseum DSM 43021]
Length = 571
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 133/276 (48%), Gaps = 34/276 (12%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ L RQ P IQ+ P ++ G + Q+GSGKTLA+ LP++ R
Sbjct: 22 FTLLGLPKPLVTGLSRQGIDSPFPIQSATIPDILAGSDVLGRGQTGSGKTLAFGLPMMAR 81
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ SK+ G P V+L PT ELA QV L + G+ R V GG Q
Sbjct: 82 IAG------SKARPGRPLAVVLVPTRELAMQVTDALEPLGR-GLSLRMKTVVGGMSMGRQ 134
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+E L+ GV+V++ATPGR LI++G L ++ ILDE D + D F + +++ +
Sbjct: 135 IEALRRGVEVVVATPGRLTDLIQQGECTLDEVQVTILDEADHMC-DLGFFPVVSAILQQT 193
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP------GLEEFLVDCSGDQ 503
P +Q L +ATL ++ +KLV F + P H ++P +E +++ D
Sbjct: 194 PADSQRLLFSATLDGDV-DKLVRRF-----LTDPVTHSMAPVASSVDTMEHHVLEVHRD- 246
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
DK P TA + + +TI+F +
Sbjct: 247 --DKFPVTAEIANREG-----------RTIIFVRTQ 269
>gi|329898744|ref|ZP_08272452.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
gi|328920765|gb|EGG28222.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC3088]
Length = 412
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 119/198 (60%), Gaps = 8/198 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG S +++++ + P+ IQ+ A PV++GK + + Q+G+GKT A+ LP+++
Sbjct: 2 NFSDLGLSPKLLQAISDTGYTTPTAIQSAAIGPVLQGKDLMASAQTGTGKTAAFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ ++S SP+ +I+ PT ELA+Q+ ++ ++ SK + R++ V GG +
Sbjct: 62 TLLRKP------NSSKSPKFLIITPTRELAAQIEASAQTYSKY-ISCRTLAVFGGVKIGP 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L++GVDVLIATPGR + L ++G + L + +LDE D + D F A++ +
Sbjct: 115 QIRQLKQGVDVLIATPGRLLDLSEQGEVDLKMIDVLVLDEADRML-DMGFIPAIRRIQKL 173
Query: 449 SPVTAQYLFVTATLPVEI 466
P T Q L +AT EI
Sbjct: 174 LPATKQTLMFSATYSDEI 191
>gi|424031298|ref|ZP_17770749.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
gi|408878668|gb|EKM17662.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-01]
Length = 526
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 21/204 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRV-------VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG 382
L S PRV ++L PT ELA+QV N S+ +P S VV G
Sbjct: 63 L------------SNGPRVRGNHIRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFG 109
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q+ L++G DVL+ATPGR M L + ++ L +LDE D + D F +
Sbjct: 110 GVKINPQMLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEMLVLDEADRML-DMGFIRDI 168
Query: 443 QSLISSSPVTAQYLFVTATLPVEI 466
+ ++ P Q L +AT EI
Sbjct: 169 RKILELLPKQRQNLLFSATFSNEI 192
>gi|322785598|gb|EFZ12253.1| hypothetical protein SINV_05205 [Solenopsis invicta]
Length = 725
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 110/212 (51%), Gaps = 11/212 (5%)
Query: 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLL 324
F ++F+E DY++ +K+Q F P+ IQA +P + G+ + Q+GSGKTLAY+L
Sbjct: 106 FPVQAFEESNFPDYVMNEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYIL 165
Query: 325 PVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTG 382
P I + + S P V+ILAPT ELA Q+ + R S C R+ + G
Sbjct: 166 PAIVHINNQP----RLSRGDGPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFG 218
Query: 383 GFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
G + Q +L+ GV++ IATPGR + +++G L +LDE D + D FE +
Sbjct: 219 GSPKGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQI 277
Query: 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474
+ +I Q L +AT P E+ L E F
Sbjct: 278 RKIIEQIRPDRQVLMWSATWPKEV-QALAEDF 308
>gi|387606349|ref|YP_006095205.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
gi|284920649|emb|CBG33712.1| putative ATP-dependent RNA helicase [Escherichia coli 042]
Length = 454
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
+ P Q L +AT +I N
Sbjct: 175 TKLPAKRQNLLFSATFSDDIKN 196
>gi|183222181|ref|YP_001840177.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912238|ref|YP_001963793.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776914|gb|ABZ95215.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780603|gb|ABZ98901.1| ATP-dependent RNA helicase RhlE [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 471
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 18/272 (6%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F +L Y+ +++ + +P+ IQ A P +++ + Q+G+GKT A+ LP+I
Sbjct: 6 ETFSDLKLDRYIQKAVAETGYTKPTPIQIQAIPLLLDNHDLLGCAQTGTGKTAAFALPMI 65
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK 387
L + +K PR ++L PT ELA QV + K R+ V+ GG Q
Sbjct: 66 HNL----ISTRAKPNPKQPRSLVLVPTRELAIQVHESFVLYGKY-TQIRTAVIFGGVGQN 120
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q + + G+DVLIATPGR + L+ + ++ L NL +LDE D + D F ++ +IS
Sbjct: 121 PQAKAIASGLDVLIATPGRLVDLMNQNLVSLKNLEIFVLDEADRML-DMGFIHDIRKIIS 179
Query: 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q LF +AT+P EI KL +++ P ++P V + + S
Sbjct: 180 YLPKRRQNLFFSATMPPEI-EKLAN-----SILVEPIRIDVTP------VSSTVELISQS 227
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T +KK+ LL L + KTI+F K
Sbjct: 228 VMYTELADKKNLLLHLFKDKNFKKTIIFTKTK 259
>gi|170768930|ref|ZP_02903383.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
gi|170122002|gb|EDS90933.1| putative ATP-dependent RNA helicase RhlE [Escherichia albertii
TW07627]
Length = 447
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
+ P Q L +AT +I N
Sbjct: 175 TKLPAKRQNLLFSATFSDDIKN 196
>gi|62289879|ref|YP_221672.1| DEAD/DEAH box helicase [Brucella abortus bv. 1 str. 9-941]
gi|82699806|ref|YP_414380.1| ATP-dependent helicase [Brucella melitensis biovar Abortus 2308]
gi|189024121|ref|YP_001934889.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237815373|ref|ZP_04594371.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260545377|ref|ZP_05821118.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260757905|ref|ZP_05870253.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260761727|ref|ZP_05874070.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|376273333|ref|YP_005151911.1| DEAD/DEAH box helicase [Brucella abortus A13334]
gi|423166951|ref|ZP_17153654.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|423170675|ref|ZP_17157350.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|423173245|ref|ZP_17159916.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|423177470|ref|ZP_17164116.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|423180106|ref|ZP_17166747.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|423183238|ref|ZP_17169875.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|423185822|ref|ZP_17172436.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
gi|423188960|ref|ZP_17175570.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|62196011|gb|AAX74311.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
bv. 1 str. 9-941]
gi|82615907|emb|CAJ10911.1| ATP-dependent helicase, DEAD-box:DEAD/DEAH box helicase:Helicase,
C-terminal:ATP/GTP-binding site motif A (P-loop)
[Brucella melitensis biovar Abortus 2308]
gi|189019693|gb|ACD72415.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella abortus
S19]
gi|237790210|gb|EEP64420.1| ATP-dependent RNA helicase dbp2 [Brucella abortus str. 2308 A]
gi|260096784|gb|EEW80659.1| ATP-dependent RNA helicase [Brucella abortus NCTC 8038]
gi|260668223|gb|EEX55163.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 4 str. 292]
gi|260672159|gb|EEX58980.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 2 str. 86/8/59]
gi|363400939|gb|AEW17909.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
A13334]
gi|374540723|gb|EHR12223.1| hypothetical protein M19_01208 [Brucella abortus bv. 1 str. NI474]
gi|374542573|gb|EHR14061.1| hypothetical protein M17_00641 [Brucella abortus bv. 1 str. NI435a]
gi|374542884|gb|EHR14369.1| hypothetical protein M1A_00643 [Brucella abortus bv. 1 str. NI486]
gi|374549951|gb|EHR21393.1| hypothetical protein M1G_01206 [Brucella abortus bv. 1 str. NI010]
gi|374550470|gb|EHR21909.1| hypothetical protein M1I_01207 [Brucella abortus bv. 1 str. NI016]
gi|374550754|gb|EHR22190.1| hypothetical protein M1E_01712 [Brucella abortus bv. 1 str. NI488]
gi|374558618|gb|EHR30011.1| hypothetical protein M1M_00642 [Brucella abortus bv. 1 str. NI259]
gi|374559616|gb|EHR31002.1| hypothetical protein M1K_00640 [Brucella abortus bv. 1 str. NI021]
Length = 482
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|424834031|ref|ZP_18258749.1| ATP-dependent RNA helicase RhlE [Clostridium sporogenes PA 3679]
gi|365979266|gb|EHN15331.1| ATP-dependent RNA helicase RhlE [Clostridium sporogenes PA 3679]
Length = 425
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 23/273 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L + ++LK + + + + IQ + P +++GK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L ++ K + +PR + +LAPT ELA Q+ + K + +S V+ GG Q
Sbjct: 63 LSKD------KKVNKNPRTIRALVLAPTRELAIQIGESFECYGKY-INLKSAVIFGGVSQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L+EGVD+LIATPGR + L + + L N+ C +LDE D + D ++ +I
Sbjct: 116 NPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRML-DMGMIHDVKKII 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S P Q L +AT+P EI KLV+ +V P ++P V + D +
Sbjct: 175 SKLPKVRQNLLFSATMPSEI-TKLVD-----SIVKDPIRVEVTP------VSSTVDTITQ 222
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K+S L L++ + +VF K
Sbjct: 223 EVYHVRKKQKRSLLKHLLKDESIDSALVFSTTK 255
>gi|154252927|ref|YP_001413751.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154156877|gb|ABS64094.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 448
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 133/271 (49%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG ++ + +L N+ P+ IQA A P ++EG+ + Q+G+GKT A+ LP++Q
Sbjct: 5 TFADLGVAEPLCRALAANNYTNPTPIQAQAIPALLEGRDLLGLAQTGTGKTAAFALPILQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L K R +ILAPT ELA Q+ + S K R V+ GG Q
Sbjct: 65 ILAAAN----EKRQPKEARALILAPTRELAVQISQSIESYGK-NFKLRHTVIFGGVNQFR 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ + GVD+++ATPGR + L+ + + L +LDE D + D F ++ +I++
Sbjct: 120 QVKAMTAGVDIVVATPGRLLDLMNQKHVNLSRTSLLVLDEADRML-DMGFIRDVRKIIAA 178
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT+P I + E+ + V +++ ++ G +
Sbjct: 179 MPRQRQSLLFSATMPSSIQHLADEILREPVRVEVTPEVVTVDKIDQRVLHVDGKR----- 233
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K+ L +L++ S +S+ IVF K
Sbjct: 234 -------KRELLAKLLDNSELSRVIVFTRTK 257
>gi|328699290|ref|XP_001948649.2| PREDICTED: ATP-dependent RNA helicase vasa, isoform A-like
[Acyrthosiphon pisum]
Length = 678
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 141/282 (50%), Gaps = 23/282 (8%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
S SF+ G ++++L NF P+ +Q A P ++EG+ + + Q+GSGKT AY+LP
Sbjct: 251 SMTSFQSSGLRTILLDNLSNCNFSTPTPVQNYAIPIIIEGRDLMASAQTGSGKTAAYVLP 310
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG-- 383
++ L ++ Q + P VVI+APT EL SQ+ SK G R+ ++ GG
Sbjct: 311 ILHNLLKQPTQLIYDEHHCEPHVVIIAPTRELVSQISECVWKFSK-GTDIRNGLLYGGTS 369
Query: 384 -FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442
+ QK+++ LQ GV +L ATPGR + +++GI+ +++ +LDE D + D F+ +
Sbjct: 370 VYHQKSKI--LQRGVHILTATPGRLIDFVEKGIVTFSSVKFFVLDEADRML-DMGFKPDI 426
Query: 443 QSLISSSPV----TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498
+ ++++S + + Q + +AT I + + + G I ++ +
Sbjct: 427 EQVLTNSTMPSIESRQTIMFSATFASPIQHMATSYLKSDYIFVAVG--EIGGACKDVV-- 482
Query: 499 CSGDQESDKTPETAFLNKKSALLQLI-EKSPVSKTIVFCNKK 539
E KK+ALL +I E TIVF +K
Sbjct: 483 -------QTVIEVTKFKKKNALLDIIKEMENCQGTIVFVERK 517
>gi|270009742|gb|EFA06190.1| hypothetical protein TcasGA2_TC009039 [Tribolium castaneum]
Length = 808
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 139/267 (52%), Gaps = 24/267 (8%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++E +K+ F RPS IQ+ A+P ++ G+ I Q+G+GKTLA+LLP + + + Q +
Sbjct: 236 ILEEMKKAGFTRPSPIQSQAWPVLLSGEDLIGIAQTGTGKTLAFLLPALIHI---DGQNI 292
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
KS G P V+++APT ELA Q+ + G+ ++ + GG ++ Q++ L +GVD
Sbjct: 293 KKSERGGPAVLVMAPTRELALQIDKEVKKYEYKGIT--AVCIYGGGNRREQIKVLTDGVD 350
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + G L++ + +LDE D + D FE ++ ++ S T Q +
Sbjct: 351 IVIATPGRLNDLAEAGHLEVKYVTYVVLDEADRML-DMGFEPQIRKVMYSIRPTRQTVMT 409
Query: 459 TATLPVEIYNKLVEVFPD-CKVVMG----PGMHRISPGLEEFLVDCSGDQESDKTPETAF 513
+AT P + D ++ +G H ++ +E + DQE +T F
Sbjct: 410 SATWPPGVRRLAQSYMVDPIQIYVGTLDLAATHTVTQIIE---IIPDDDQEKFRT----F 462
Query: 514 LNKKSALLQLIEKSPVSKTIVFCNKKS 540
+N + L P K I FC KK+
Sbjct: 463 MNFATNL------DPSEKVIAFCGKKA 483
>gi|265984026|ref|ZP_06096761.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
gi|264662618|gb|EEZ32879.1| DEAD/DEAH box helicase domain-containing protein [Brucella sp.
83/13]
Length = 482
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|359451210|ref|ZP_09240620.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
gi|358042989|dbj|GAA76869.1| ATP-dependent RNA helicase RhlE [Pseudoalteromonas sp. BSi20480]
Length = 438
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF+ LG S ++ ++ + + P+ IQA A P ++E + + A Q+G+GKT + LP+I+
Sbjct: 2 SFEGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIERRDVMAAAQTGTGKTAGFTLPLIE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL K+ S R +ILAPT ELA QV N +K S VV GG +
Sbjct: 62 RLSTG-----PKAKSNHVRALILAPTRELALQVSENVEEYAKHS-NVSSFVVYGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L++GVD+L+ATPGR + L + ++ ++ +LDE D + D F ++ LI+
Sbjct: 116 QMQRLRKGVDILVATPGRLIDLHNQNAVKFDSVEVLVLDEADRML-DMGFIHDIKRLIAK 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 MPAKRQNLMFSATFSDDI 192
>gi|307172925|gb|EFN64092.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
Length = 414
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 129/272 (47%), Gaps = 16/272 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E G DY+++ +KRQ F P+ IQA +P + G+ + +GSGKTL+Y+LP I
Sbjct: 102 NFEEAGFPDYVLKEIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPAIV 161
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ + S P ++LAPT ELA Q+ R+ + GG +
Sbjct: 162 HINSQP----KLSRKDGPIALVLAPTRELAQQIQQVADDFGHSS-GIRNTCLYGGAPKGA 216
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q +L GV+++IATPGR + ++ G L +LDE D + D FE ++ +I
Sbjct: 217 QARDLDGGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEADRML-DMGFEPQIRKIIEQ 275
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF-LVDCSGDQESDK 507
Q L +AT P E+ N L E F + G ++S ++D D E +
Sbjct: 276 IRPDRQTLMWSATWPKEVKN-LAEDFLKDYAQINVGSLQLSANHNILQIIDVCQDYEKE- 333
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK S LL+ I +KTIVF K
Sbjct: 334 -------NKLSTLLKEIMAESENKTIVFIETK 358
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 140/273 (51%), Gaps = 23/273 (8%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + +++ + R ++L PT ELA+QV + + K +P +S V+ GG
Sbjct: 62 LLSRG-----NRAQAKKVRALVLTPTRELAAQVAESVETYGKY-LPLKSAVIFGGVGIGP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L +GVD+L+ATPGR + L +G + L ILDE D + D F ++ ++
Sbjct: 116 QISKLGKGVDILVATPGRLLDLYNQGAVNFNQLEVLILDEADRML-DMGFIHDIKKILRV 174
Query: 449 SPVTAQYLFVTATLPVEIYNKLVE--VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
P Q L +AT +I KL + V ++ + P + + +E+++ Q
Sbjct: 175 LPAKRQNLMFSATFSDDI-RKLAKGLVNNPVEISVTP-RNATAKSVEQYIYMVDQKQ--- 229
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
K +AL+ LI+++ + +VF K
Sbjct: 230 ---------KTAALIHLIKQNDWKQVLVFSRTK 253
>gi|86748916|ref|YP_485412.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
gi|86571944|gb|ABD06501.1| DEAD/DEAH box helicase [Rhodopseudomonas palustris HaA2]
Length = 491
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF++ G +D + +L+ +N+ P+ IQA P + G+ + Q+G+GKT ++ LP++
Sbjct: 9 SFQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTASFALPILH 68
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
R+ + ++ K+ RV++L+PT EL+ Q+L + + + + + + GG
Sbjct: 69 RILENRIKPQPKTC----RVLVLSPTRELSGQILDSFNAYGRH-IRLSATLAIGGVPMGR 123
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +L +GV+VL+ATPGR + L++ L+L + +LDE D + D F ++ +++
Sbjct: 124 QVRSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRML-DMGFINDIRKIVAK 182
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGP 483
P+ Q LF +AT+P +I + ++ D +V + P
Sbjct: 183 LPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTP 218
>gi|422782366|ref|ZP_16835151.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
gi|323976817|gb|EGB71905.1| DEAD/DEAH box helicase [Escherichia coli TW10509]
Length = 454
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
+ P Q L +AT +I N
Sbjct: 175 TKLPAKRQNLLFSATFSDDIKN 196
>gi|306840451|ref|ZP_07473211.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
gi|306289585|gb|EFM60800.1| DEAD-box ATP dependent DNA helicase [Brucella sp. BO2]
Length = 482
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDTLKNAIIFCNRK 257
>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 616
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 3/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 5 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 64
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N R +K + S V+ GG K
Sbjct: 65 RLASGTAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKY-LDITSTVIFGGVGMKP 122
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++GVDVL+ATPGR + L +G + L + ILDE D + D F ++ +++
Sbjct: 123 QIARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRML-DMGFIHDVKKVLAL 181
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 182 VPKDKQSLLFSATFSDEI 199
>gi|110833595|ref|YP_692454.1| DEAD/DEAH box helicase [Alcanivorax borkumensis SK2]
gi|110646706|emb|CAL16182.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax
borkumensis SK2]
Length = 459
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 19/203 (9%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG D + ++ + + PS IQA A P V+ G+ + A Q+G+GKT + LP+++R
Sbjct: 3 FSDLGLCDALQAAVAERGYDTPSPIQAQAIPAVLSGRDVMAAAQTGTGKTAGFTLPLLER 62
Query: 330 LRQEELQGLSKSTSGSP------RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383
LR +GSP R ++L PT ELA+QV + + K +P S VV GG
Sbjct: 63 LR-----------TGSPARNNQVRALVLTPTRELAAQVAESVATYGK-NLPLTSTVVFGG 110
Query: 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443
+ Q++ L+ G DVL+ATPGR + L ++ ++ +L ILDE D + D F ++
Sbjct: 111 VKINPQMQRLRGGCDVLVATPGRLLDLYQQNAVKFDHLEVLILDEADRML-DMGFIHDIR 169
Query: 444 SLISSSPVTAQYLFVTATLPVEI 466
+++ P Q L +AT EI
Sbjct: 170 KILAKLPPKRQNLMFSATFSSEI 192
>gi|23501822|ref|NP_697949.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|161618894|ref|YP_001592781.1| ATP-dependent RNA helicase DDX17 [Brucella canis ATCC 23365]
gi|256369364|ref|YP_003106872.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260566511|ref|ZP_05836981.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261325038|ref|ZP_05964235.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261752249|ref|ZP_05995958.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261754908|ref|ZP_05998617.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294852292|ref|ZP_06792965.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|376274316|ref|YP_005114755.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
gi|376280615|ref|YP_005154621.1| DEAD/DEAH box helicase [Brucella suis VBI22]
gi|384224609|ref|YP_005615773.1| DEAD/DEAH box helicase [Brucella suis 1330]
gi|23347756|gb|AAN29864.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella suis
1330]
gi|161335705|gb|ABX62010.1| Probable ATP-dependent RNA helicase DDX17 [Brucella canis ATCC
23365]
gi|255999524|gb|ACU47923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Brucella microti
CCM 4915]
gi|260156029|gb|EEW91109.1| ATP-dependent RNA helicase [Brucella suis bv. 4 str. 40]
gi|261301018|gb|EEY04515.1| DEAD/DEAH box helicase domain-containing protein [Brucella neotomae
5K33]
gi|261742002|gb|EEY29928.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
5 str. 513]
gi|261744661|gb|EEY32587.1| DEAD/DEAH box helicase domain-containing protein [Brucella suis bv.
3 str. 686]
gi|294820881|gb|EFG37880.1| ATP-dependent RNA helicase [Brucella sp. NVSL 07-0026]
gi|343382789|gb|AEM18281.1| DEAD-box ATP dependent DNA helicase [Brucella suis 1330]
gi|358258214|gb|AEU05949.1| DEAD-box ATP dependent DNA helicase [Brucella suis VBI22]
gi|363402883|gb|AEW13178.1| ATP-dependent RNA helicase [Brucella canis HSK A52141]
Length = 482
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|399116968|emb|CCG19780.1| ATP-dependent rna helicase [Taylorella asinigenitalis 14/45]
Length = 562
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 41/295 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++SL+R +F P+++Q + P +EGK I++ Q+GSGKT A++LP IQ
Sbjct: 5 NFADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 329 RLRQE-----ELQGLSKSTS-----GSP---------RVVILAPTAELASQVLSNCRSLS 369
RL E + + +SK+ S G P ++++L PT ELA QV +
Sbjct: 65 RLLHELETRPQTEEISKAKSSRRKKGKPTANPPKYGVQILVLTPTRELAMQVADATKEFI 124
Query: 370 KC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
GV ++V GG Q+ +L V++++ATPGR + IK G ++L NL+ ILD
Sbjct: 125 YGFKGVHIATLV--GGMAYGPQINSLSREVEIIVATPGRLLDHIKAGRVKLHNLKVLILD 182
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D + D F ++++++ +P Q L +AT E+ + ++
Sbjct: 183 EADRML-DMGFIHDIKNVVAETPDEKQTLLFSATFEGNTVKLAKEMLKSPERIVVSDHKE 241
Query: 488 ISPGLEEFL--VDCSGDQESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKK 539
+E+FL D G K LL+ + + P V +TIVF K
Sbjct: 242 KHQNIEQFLFYADTVGH--------------KFKLLEALLRDPDVDQTIVFTKTK 282
>gi|187777742|ref|ZP_02994215.1| hypothetical protein CLOSPO_01334 [Clostridium sporogenes ATCC
15579]
gi|187774670|gb|EDU38472.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
Length = 425
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 23/273 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ L + ++LK + + + + IQ + P +++GK + Q+G+GKT A+ +PV+Q
Sbjct: 3 FENLEIIKPIQKALKEEGYKKTTPIQEKSIPYILDGKDLVGCAQTGTGKTAAFAVPVLQN 62
Query: 330 LRQEELQGLSKSTSGSPRVV---ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L ++ K + +PR + +LAPT ELA Q+ + K + +S V+ GG Q
Sbjct: 63 LSKD------KKVNKNPRTIRALVLAPTRELAIQIGESFECYGKY-INLKSAVIFGGVSQ 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q + L+EGVD+LIATPGR + L + + L N+ C +LDE D + D ++ +I
Sbjct: 116 NPQTKALREGVDILIATPGRMLDLFNQKYIDLRNIECFVLDEADRML-DMGMIHDVKKII 174
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
S P Q L +AT+P EI KLV+ +V P ++P V + D +
Sbjct: 175 SKLPKVRQNLLFSATMPSEI-TKLVD-----SIVKDPIRVEVTP------VSSTVDTITQ 222
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+ K+S L L++ + +VF K
Sbjct: 223 EVYHVRKKQKRSLLKHLLKDESIESALVFSTTK 255
>gi|408372746|ref|ZP_11170445.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
gi|407767098|gb|EKF75536.1| DEAD/DEAH box helicase [Alcanivorax hongdengensis A-11-3]
Length = 550
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 29/279 (10%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
SR F LG + ++ ++ RQ F +PS IQA A P ++EG + Q+G+GKT A+ LP
Sbjct: 4 SRTGFATLGLPEALLTAIARQGFEQPSPIQAQAIPLLLEGHDLLGQAQTGTGKTAAFALP 63
Query: 326 VIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
++ RL + P+++ILAPT ELA QV C + + + + GG
Sbjct: 64 LLARL---------DVSLRQPQMLILAPTRELAIQVAKACEEFAANMPGLQVLPIYGGGE 114
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+TQL+ L+ G V++ TPGR M ++ G L+L L+ +LDE D + F ++ +
Sbjct: 115 YRTQLKGLRAGAQVIVGTPGRVMDHMERGALKLDQLKALVLDEADEMLR-MGFIDDVKWV 173
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505
+ +P Q +AT+P + K+ + H +P ++ +D G S
Sbjct: 174 LERTPADCQLALFSATMP-PVIRKVAD------------QHLKNP--KQVQIDNGGATTS 218
Query: 506 DKTPE----TAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540
+ + A LNK AL +++E IVF K
Sbjct: 219 TQVRQRFWAVAGLNKLDALCRMLEAEDHDAVIVFVRTKQ 257
>gi|311771467|dbj|BAJ25759.1| vasa [Pagrus major]
Length = 631
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 132/275 (48%), Gaps = 17/275 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F E G + + +++ + +++P+ +Q P + G+ + Q+GSGKT A+LLP++Q
Sbjct: 197 TFDEAGLCESLRKTVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQ 256
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + S S P +I+APT EL +Q+ R + G R +VV GG
Sbjct: 257 QLMADGVAASSFSELQEPEAIIVAPTRELINQIYLEARKFAY-GTCVRPVVVYGGVSTGY 315
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L G +VL TPGR M +I G + L LR +LDE D + D FE A++ L+ S
Sbjct: 316 QIRELCRGCNVLCGTPGRLMDVIGRGKVGLSKLRYLVLDEADRML-DMGFEPAMRRLVGS 374
Query: 449 ----SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
S Q L +AT P +I + + + G+ + D E
Sbjct: 375 PGMPSKENRQTLMFSATYPDDIQRMGADFLKTDYLFLAVGV----------VGAACNDVE 424
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T F +K+ LL L++ + +T+VF K
Sbjct: 425 QTFVQVTKF-SKREQLLDLLKTTGTERTMVFVETK 458
>gi|366160940|ref|ZP_09460802.1| ATP-dependent RNA helicase RhlE [Escherichia sp. TW09308]
gi|432371534|ref|ZP_19614587.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
gi|430898972|gb|ELC21078.1| ATP-dependent RNA helicase rhlE [Escherichia coli KTE11]
Length = 454
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 107/198 (54%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLISREPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRML-DMGFIHDIRRVLTK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPAKRQNLLFSATFSDEI 194
>gi|336249396|ref|YP_004593106.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
gi|334735452|gb|AEG97827.1| ATP-dependent RNA helicase RhlE [Enterobacter aerogenes KCTC 2190]
Length = 446
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL Q++ + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLTQDQPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPPRRQNLLFSATFSDEI 194
>gi|384156092|ref|YP_005538907.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345469646|dbj|BAK71097.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 435
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++K + + P+ IQ+ + P ++ K + A Q+G+GKT + LP++Q
Sbjct: 2 SFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL+ L K R +IL PT ELA+QV + + K +PF+S V+ GG
Sbjct: 62 RLKDSNL----KDKKTQVRALILTPTRELAAQVAQSVETYGKY-LPFKSAVIFGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD++IATPGR + LI + L L + +LDE D + D F ++ +++
Sbjct: 117 QKALLKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRML-DMGFINDIKKILAI 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + +V + S +E+ + D+
Sbjct: 176 LPKQRQNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDR----- 230
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK LL L+ K+ + +VF K
Sbjct: 231 -------KKELLLHLVNKNSWQQVLVFTRTK 254
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 18/271 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG ++ ++K + + P+ IQ+ + P ++ K + A Q+G+GKT + LP++Q
Sbjct: 2 SFSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL+ L K R +IL PT ELA+QV + + K +PF+S V+ GG
Sbjct: 62 RLKDSNL----KDKKTQVRALILTPTRELAAQVAQSVETYGKY-LPFKSAVIFGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q L++GVD++IATPGR + LI + L L + +LDE D + D F ++ +++
Sbjct: 117 QKALLKKGVDIIIATPGRLLDLISQDSLDLSKIEFLVLDEADRML-DMGFINDIKKILAI 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q L +AT EI + +V + S +E+ + D+
Sbjct: 176 LPKQRQNLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDR----- 230
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KK LL L+ K+ + +VF K
Sbjct: 231 -------KKELLLHLVNKNSWQQVLVFTRTK 254
>gi|269961856|ref|ZP_06176213.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
gi|269833434|gb|EEZ87536.1| ATP-dependent RNA helicase [Vibrio harveyi 1DA3]
Length = 526
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNQVRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR + L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRML-DMGFIRDIRKILDLL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKQRQNLLFSATFSDEI 192
>gi|224134991|ref|XP_002327540.1| predicted protein [Populus trichocarpa]
gi|222836094|gb|EEE74515.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 22/275 (8%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
KSF ++G DY+++ + + F P+ IQA +P ++G+ I ++GSGKTLAYLLP I
Sbjct: 91 KSFHDVGFPDYVLQEISKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAI 150
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR--SMVVTGGFR 385
+ + + P V++LAPT ELA Q+ +K G R + + GG
Sbjct: 151 IHVNAQPFL----APGDGPIVLVLAPTRELAVQIQQEA---AKFGASSRIKNTCIYGGVP 203
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q+ +LQ+GV+++IATPGR + +++ L + +LDE D + D FE ++ +
Sbjct: 204 KGPQVRDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRML-DMGFEPQIRKI 262
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVE-VFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504
+S Q L+ +AT P E+ + ++ KV++G SP L+ + + Q
Sbjct: 263 VSQIRPDRQTLYWSATWPKEVEQLARQSLYNPYKVIIG------SPDLK---ANHAIRQH 313
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
D E NK LL+ I S+ ++F + K
Sbjct: 314 VDIVSENQKYNKLVKLLEDIMDG--SRILIFMDTK 346
>gi|17987318|ref|NP_539952.1| ATP-dependent RNA helicase DeaD [Brucella melitensis bv. 1 str.
16M]
gi|225852449|ref|YP_002732682.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis ATCC 23457]
gi|256264057|ref|ZP_05466589.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260563958|ref|ZP_05834444.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260754681|ref|ZP_05867029.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260883707|ref|ZP_05895321.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|265991030|ref|ZP_06103587.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|265994867|ref|ZP_06107424.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|297248281|ref|ZP_06931999.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|384211314|ref|YP_005600396.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|384408416|ref|YP_005597037.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|384445012|ref|YP_005603731.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
gi|17982999|gb|AAL52216.1| ATP-dependent RNA helicase dead [Brucella melitensis bv. 1 str.
16M]
gi|225640814|gb|ACO00728.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis ATCC 23457]
gi|260153974|gb|EEW89066.1| ATP-dependent RNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|260674789|gb|EEX61610.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 6 str. 870]
gi|260873235|gb|EEX80304.1| DEAD/DEAH box helicase domain-containing protein [Brucella abortus
bv. 9 str. C68]
gi|262765980|gb|EEZ11769.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 3 str. Ether]
gi|263001814|gb|EEZ14389.1| DEAD/DEAH box helicase domain-containing protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|263094252|gb|EEZ18122.1| ATP-dependent RNA helicase [Brucella melitensis bv. 2 str. 63/9]
gi|297175450|gb|EFH34797.1| ATP-dependent RNA helicase [Brucella abortus bv. 5 str. B3196]
gi|326408963|gb|ADZ66028.1| ATP-dependent RNA helicase Dbp2 [Brucella melitensis M28]
gi|326538677|gb|ADZ86892.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis M5-90]
gi|349743004|gb|AEQ08547.1| ATP-dependent RNA helicase dbp2 [Brucella melitensis NI]
Length = 482
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|403268867|ref|XP_003926484.1| PREDICTED: probable ATP-dependent RNA helicase DDX43 [Saimiri
boliviensis boliviensis]
Length = 586
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 134/262 (51%), Gaps = 16/262 (6%)
Query: 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGL 338
++E++K+ F +P+ IQA A+P V++G I Q+G+GKTL YL+P L +LQ
Sbjct: 191 VMENIKKSGFKKPTPIQAQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHL---DLQPT 247
Query: 339 SKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD 398
K P +++L PT ELA QV C S G FRS+ V GG + Q+E L++GVD
Sbjct: 248 VKGQRNRPGMLVLTPTRELALQVEGECGKYSYKG--FRSVCVYGGGSRDEQIEELRKGVD 305
Query: 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458
++IATPGR L + L N+ +LDE D + D FE + ++ Q +
Sbjct: 306 IIIATPGRLNDLQMNNFVNLKNITYLVLDEADKML-DMGFEPQIMKILLDVRPDRQTVMT 364
Query: 459 TATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS 518
+AT P ++ +L + + +++ G L+ V T E +++ ++
Sbjct: 365 SATWPRSVH-RLAQSYLKEPMLVYVGT------LDLVAVSSVKQNIIVTTEEEKWIHIQT 417
Query: 519 ALLQLIEKSPVSKTIVFCNKKS 540
L + SP K IVF ++K+
Sbjct: 418 FLQSM---SPTDKVIVFVSRKA 436
>gi|330994043|ref|ZP_08317973.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
gi|329758989|gb|EGG75503.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter sp. SXCC-1]
Length = 508
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 137/275 (49%), Gaps = 30/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F ELG S+ + ++ + P+ IQA A P V+ G+ + Q+G+GKT ++ LP++
Sbjct: 31 FSELGLSEPIQRAIDEMGYRHPTPIQAQAIPYVLMGRDVLGVAQTGTGKTASFTLPML-- 88
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
E LQG S++ + PR +IL PT ELA QV N + K + ++ GG Q
Sbjct: 89 ---EILQG-SRARARMPRSLILEPTRELALQVAENFVNYGKH-LKLTHALLIGGESMAEQ 143
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
E L GVDVLIATPGR + L + G L L + ++DE D + D F ++ ++S
Sbjct: 144 KEVLNRGVDVLIATPGRLIDLFERGGLLLTQTKLLVIDEADRML-DMGFIPDIEKIVSML 202
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF---PDCKVVMGPG--MHRISPGLEEFLVDCSGDQE 504
Q LF +AT+ EI +L + F P V P I GL +VD
Sbjct: 203 SPLRQTLFFSATMAPEI-RRLADAFLRNPKEITVSRPSSVASTIETGLA--IVDAK---- 255
Query: 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+K+ AL +L+ ++ + IVFCN+K
Sbjct: 256 ----------DKRRALRKLLREADMQNAIVFCNRK 280
>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 453
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ ++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVSSEGYENPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PTDRQTLLFSAT 190
>gi|384262623|ref|YP_005417810.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
gi|378403724|emb|CCG08840.1| DEAD/DEAH box helicase [Rhodospirillum photometricum DSM 122]
Length = 506
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 30/275 (10%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +LG S +++++ + P+ IQA A P V +G+ + Q+G+GKT ++ LP+I
Sbjct: 59 FADLGLSPETLKAIEEVGYTTPTPIQAQAIPVVQQGRDVLGIAQTGTGKTASFTLPMI-- 116
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
++ ++ + PR +ILAPT ELASQV N K ++++ GG Q
Sbjct: 117 ----DILASGRAKARMPRSLILAPTRELASQVADNFTLYGKYQKLSMALLI-GGESMGEQ 171
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIATPGR + L + G + L +++ ++DE D + D F ++ ++S
Sbjct: 172 QKALDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRML-DMGFIPDVERIVSLL 230
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+ EI +L + F +M P R+ Q++ T
Sbjct: 231 PKMRQTLFFSATMDKEI-RRLADAF-----LMNPKEVRV-----------EQTQKAADTV 273
Query: 510 ETAFL-----NKKSALLQLIEKSPVSKTIVFCNKK 539
E + +K+ +L L+ + V+ +FCN+K
Sbjct: 274 EQGLVVVSHHDKRESLRHLLRREDVANAFIFCNRK 308
>gi|167382648|ref|XP_001736203.1| ATP-dependent RNA helicase DBP2 [Entamoeba dispar SAW760]
gi|165901364|gb|EDR27447.1| ATP-dependent RNA helicase DBP2, putative [Entamoeba dispar SAW760]
Length = 535
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E +++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 154 TFEECNFPQSILDVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 213
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q
Sbjct: 214 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTSIKTVRCFGGVPQSC 268
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++ Q G D+ +ATPGR + IK G+ L ILDE D + + FEV +Q +I
Sbjct: 269 QMKDFQSGCDICVATPGRLIDFIKRGVTNLSRCTFLILDEADRML-EMGFEVQVQDIIGQ 327
Query: 449 SPVTAQYLFVTATLPVEI 466
Q + TAT P I
Sbjct: 328 IRPDRQTVMWTATWPQAI 345
>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 613
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 3/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N R +K + S V+ GG K
Sbjct: 62 RLASGTAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKY-LDITSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++GVDVL+ATPGR + L +G + L + ILDE D + D F ++ +++
Sbjct: 120 QIARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 179 VPKDKQSLLFSATFSDEI 196
>gi|254515124|ref|ZP_05127185.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
gi|219677367|gb|EED33732.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium NOR5-3]
Length = 444
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 7/205 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
FK+LG S ++ ++++Q + + IQ A P V++G + Q+G+GKT + LP++QR
Sbjct: 3 FKDLGLSAELLRAVEKQGYDEATPIQQKAIPLVLQGHDLLAGAQTGTGKTAGFTLPLLQR 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q + Q + KS P+V++L PT ELA+QV + R + +PFRS V+ GG Q
Sbjct: 63 L-QSKYQDVQKSF---PKVLVLTPTRELAAQVHESVRDYGRY-LPFRSAVIFGGVSINPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L +GVD+++ATPGR + +++ + L + +LDE D + D F ++ ++
Sbjct: 118 KQKLIKGVDIVVATPGRLLDHVQQRSIDLSRIEILVLDEADRML-DMGFIHDIRRVMKVI 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF 474
P Q L +AT EI KL F
Sbjct: 177 PKKRQTLLFSATFSSEI-KKLASEF 200
>gi|89900953|ref|YP_523424.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89345690|gb|ABD69893.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 574
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 114/197 (57%), Gaps = 3/197 (1%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+EL + +I+++ Q + P+ IQA A P V++G + Q+G+GKT A++LP++ +
Sbjct: 3 FEELNLAPAIIKAVLEQGYETPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFVLPMLHK 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q E +K R ++L PT ELA+QV + ++ K V S V+ GG Q
Sbjct: 63 LSQSE-AARNKFGGIGIRALVLTPTRELAAQVEESVQTYGKY-VELTSTVIFGGVGMNPQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ +++GVD+L+ATPGR + L+++G+L L ++ +LDE D + D F ++ +++
Sbjct: 121 ISRVKKGVDILVATPGRLLDLLQQGVLDLSQVQILVLDEADRML-DMGFIHDVKKVLAVV 179
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 180 PKDKQSLLFSATFSEEI 196
>gi|225434327|ref|XP_002266157.1| PREDICTED: ATP-dependent RNA helicase DBP2 [Vitis vinifera]
gi|297745752|emb|CBI15808.3| unnamed protein product [Vitis vinifera]
Length = 568
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 111/200 (55%), Gaps = 7/200 (3%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
+SF ++G +++ + + RP+ IQA A P + G+ + ++GSGKT A+ +P+I
Sbjct: 123 ESFTDMGLHQSIMKDITFHEYTRPTFIQAQAMPVALSGRDLLGCAETGSGKTAAFAIPMI 182
Query: 328 QR-LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
Q L Q ++ P ++LAPT ELA Q+ ++ S+ FR+ +V GG
Sbjct: 183 QHCLAQPPVR-----RGDGPLALVLAPTRELAQQIEKEVKAFSRSLDSFRTAIVVGGTNI 237
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q L+ GV++++ATPGRF+ ++EG L + +LDE D + D FE ++ ++
Sbjct: 238 SEQRSELRAGVNIVVATPGRFIHHLQEGNTSLSRISFVVLDEADRML-DMGFEPQIREVM 296
Query: 447 SSSPVTAQYLFVTATLPVEI 466
+ P Q L +AT+P+EI
Sbjct: 297 QNLPQKHQTLLFSATMPMEI 316
>gi|407041201|gb|EKE40586.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 523
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+E ++ +K QN+++P+ IQA+ +P V++GK + ++GSGKT+++L+P I
Sbjct: 142 TFEECNFPQSILNVIKEQNYIKPTPIQAIGWPIVLQGKDVVGIAETGSGKTISFLIPAII 201
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+ L + PRV+ILAPT EL Q+ +K G +++ GG Q +
Sbjct: 202 HILDTPLAQYRE----GPRVLILAPTRELVCQIADEAIKFTK-GTSIKTVRCFGGVPQSS 256
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+++ Q G D+ +ATPGR + IK G+ L ILDE D + + FEV +Q +I
Sbjct: 257 QMKDFQSGCDICVATPGRLIDFIKRGVTSLSRCTFLILDEADRML-EMGFEVQVQDIIGQ 315
Query: 449 SPVTAQYLFVTATLPVEI 466
Q + TAT P I
Sbjct: 316 IRPDRQTVMWTATWPQAI 333
>gi|357384319|ref|YP_004899043.1| ATP-dependent RNA helicase RhlE [Pelagibacterium halotolerans B2]
gi|351592956|gb|AEQ51293.1| ATP-dependent RNA helicase RhlE [Pelagibacterium halotolerans B2]
Length = 473
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 13/223 (5%)
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
R A G + F+ LG D++++++ F P+ IQ A P V+EG+ + Q+
Sbjct: 32 RRANGAAGKGHNLTQFQALGLDDHLLKAIAGLGFSDPTPIQERAIPLVLEGRDIMGLAQT 91
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKC 371
G+GKT A+ LP+IQ+L L+K+ P + +ILAPT EL +Q+ N R+ +K
Sbjct: 92 GTGKTAAFGLPIIQQL-------LAKTGKPDPKTCKALILAPTRELVNQIAVNLRAFTK- 143
Query: 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431
G P + V GG TQ++ L G D+++ATPGR + L+K ++L + + +LDE D
Sbjct: 144 GSPIKVNSVVGGMSIGTQIKALAHGSDIVVATPGRLLDLVKRQAIRLDSAKHLVLDEADQ 203
Query: 432 LFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474
+ D F AL+ + Q L +AT+P ++ N++ +
Sbjct: 204 ML-DLGFIHALREISRLVGTPRQTLLFSATMPRQM-NEIAATY 244
>gi|218699169|ref|YP_002406798.1| ATP-dependent RNA helicase RhlE [Escherichia coli IAI39]
gi|386623197|ref|YP_006142925.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
gi|218369155|emb|CAR16910.1| RNA helicase [Escherichia coli IAI39]
gi|349736935|gb|AEQ11641.1| ATP-dependent RNA helicase [Escherichia coli O7:K1 str. CE10]
Length = 453
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S ++ ++ Q + P+ IQ A P V+EG+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RL--RQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386
L RQ +G R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLITRQPHAKGRRPV-----RALILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSI 115
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
Q+ L+ GVDVL+ATPGR + L + ++L + +LDE D + D F ++ ++
Sbjct: 116 NPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRML-DMGFIHDIRRVL 174
Query: 447 SSSPVTAQYLFVTATLPVEIYN 468
+ P Q L +AT +I N
Sbjct: 175 TKLPAKRQNLLFSATFSDDIKN 196
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 5/202 (2%)
Query: 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLP 325
+ ++F+ G ++ +L Q + +P+ IQA A P V+ GK + A Q+G+GKT + LP
Sbjct: 71 AEQTFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALP 130
Query: 326 VIQRLRQEELQGLSKSTSGSP-RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384
+IQRL L S S + P R ++L PT ELA QV N +K RS VV GG
Sbjct: 131 IIQRLL--PLANASASPARHPVRALMLTPTRELADQVYDNVARYAK-HTDLRSTVVFGGV 187
Query: 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444
Q + L+ GV++L+ATPGR + +++ + L ++ +LDE D + D F LQ
Sbjct: 188 DMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVLDEADRML-DMGFLPDLQR 246
Query: 445 LISSSPVTAQYLFVTATLPVEI 466
+I+ P Q L +AT EI
Sbjct: 247 IINLLPAQRQTLLFSATFSPEI 268
>gi|386284070|ref|ZP_10061293.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
gi|385344973|gb|EIF51686.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
Length = 429
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 111/198 (56%), Gaps = 6/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +++++K Q + P+ IQ A P V+EGK + A Q+G+GKT + LP+++
Sbjct: 2 SFTNLGLSEPLLKAIKEQGYDTPTPIQQQAIPVVIEGKDVLAAAQTGTGKTAGFTLPLLE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
+L + + K R ++L PT ELA+QV + ++ K +P+ S V+ GG
Sbjct: 62 KLSKTQ----PKMHKKQIRALVLTPTRELAAQVAESIKTYGKH-LPYTSTVIFGGVGINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
QL +++GV+++IATPGR + + + + L C ILDE D + D F ++ L+
Sbjct: 117 QLAAIRKGVEIVIATPGRLLDIAGQKGIDFSALECLILDEADRML-DMGFIHDIKKLMKL 175
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 176 MPQKRQTLLFSATFSADI 193
>gi|348590699|ref|YP_004875161.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974603|gb|AEP37138.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 562
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 41/295 (13%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +++SL+R +F P+++Q + P +EGK I++ Q+GSGKT A++LP IQ
Sbjct: 5 NFADLGIEQILLKSLERIDFRNPTEVQVKSIPLALEGKDLIVSAQTGSGKTAAFMLPSIQ 64
Query: 329 RLRQE-----ELQGLS----------KSTSGSPR----VVILAPTAELASQVLSNCRSLS 369
RL E + + +S KST+ P+ +++L PT ELA QV +
Sbjct: 65 RLLHELETRPQTEEISKAKSSRRKRGKSTANPPKYGVQILVLTPTRELAMQVADATKEFI 124
Query: 370 KC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427
GV ++V GG Q+ +L V++++ATPGR + IK G ++L NL+ ILD
Sbjct: 125 YGFKGVHIATLV--GGMAYGPQINSLSREVEIIVATPGRLLDHIKAGRVKLHNLKVLILD 182
Query: 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR 487
E D + D F ++++++ +P Q L +AT E+ + ++
Sbjct: 183 EADRML-DMGFIHDIKNVVAETPDEKQTLLFSATFEGNTVKLAKEMLKSPERIVVSDHKE 241
Query: 488 ISPGLEEFL--VDCSGDQESDKTPETAFLNKKSALLQLIEKSP-VSKTIVFCNKK 539
+E+FL D G K LL+ + + P V +TIVF K
Sbjct: 242 KHQNIEQFLFYADTVGH--------------KFKLLEALLRDPDVDQTIVFTKTK 282
>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 426
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++K Q + +PS IQ A P ++ GK + A Q+G+GKT + LP++
Sbjct: 2 SFDSLGLPEELLRAVKEQGYTKPSPIQEQAIPVILSGKDVMAAAQTGTGKTAGFTLPLLA 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E ++ + RV+IL PT ELA+Q+ + + + +P RS VV GG +
Sbjct: 62 NLMKGE-----RAKANQVRVLILTPTRELAAQIHESVCNYGQ-NLPLRSAVVFGGVKINP 115
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVDVL+ATPGR + L ++ ++ L +LDE D + D F ++ +I
Sbjct: 116 QMQLLRRGVDVLVATPGRLLDLYQQNAVRFKQLEVLVLDEADRML-DMGFIHDIKRIIKF 174
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT +I
Sbjct: 175 LPEKRQNLLFSATFSNDI 192
>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
NRL30031/H210]
gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
NRL30031/H210]
Length = 463
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 6/192 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L ++ ++ + + P+ IQA A P +EG+ + + Q+GSGKT A+LLP +QR
Sbjct: 5 FADLNLDKNILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQR 64
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S+ PR ++L PT ELA+QV N + +K FR++ + GG Q
Sbjct: 65 LTKR-----SEKPGKGPRALVLTPTRELAAQVEKNALAYAKNMRWFRTVSIVGGASFGYQ 119
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L + VD+++ATPGR M L++ G + L ILDE D + D F +++++ ++
Sbjct: 120 TRALSKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRML-DMGFIDDIETIVEAT 178
Query: 450 PVTAQYLFVTAT 461
P Q L +AT
Sbjct: 179 PADRQTLLFSAT 190
>gi|126736040|ref|ZP_01751784.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
gi|126714597|gb|EBA11464.1| ATP-dependent RNA helicase, putative [Roseobacter sp. CCS2]
Length = 484
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 141/273 (51%), Gaps = 15/273 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F +L + +++++ + P+ IQA A P +EG+ + Q+G+GKT A+ LP+I
Sbjct: 4 FSDLNLAPKVLKAVTETGYDTPTPIQAGAIAPALEGRDVLGIAQTGTGKTAAFTLPMIT- 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L G ++ + PR ++LAPT ELA+QV N + +K R++++ GG K Q
Sbjct: 63 -----LLGRGRARARMPRSLVLAPTRELAAQVAENFDAYAKYTKLSRALLI-GGTSFKDQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ + +GVDVLIATPGR + ++ G L L +++ ++DE D + D F ++ + +
Sbjct: 117 DKIIDKGVDVLIATPGRLLDHLERGKLILTDVKIMVVDEADRML-DMGFIPDIEEIFKRT 175
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P T Q LF +AT+ EI + + + +++ +V G + +
Sbjct: 176 PFTRQTLFFSATMAPEIERITNTFLSNPAKIEVARAATTNTNIKQGVVMFKGSAKPKEPS 235
Query: 510 ETAFLNKKSALLQLI--EKSPVSKTIVFCNKKS 540
E K+ L +LI E + I+FCN+KS
Sbjct: 236 E-----KRELLRKLIDAEGEACTNAIIFCNRKS 263
>gi|402483737|gb|AFQ59989.1| RhlE [Photorhabdus luminescens]
Length = 428
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 5/228 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+ LG S ++ +++ Q + P+ IQ A P V+ GK + + Q+G+GKT + LP++Q
Sbjct: 2 NFESLGLSADILRAIEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +Q + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLNDSSIQVKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LRLRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRML-DMGFIHDIRRVLNK 176
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496
P Q L +AT +I N ++ D V + S +E+F+
Sbjct: 177 LPPKRQNLLFSATFSDDIKNLANKLLHDPVSVEVARRNSASEQIEQFV 224
>gi|89896500|ref|YP_519987.1| hypothetical protein DSY3754 [Desulfitobacterium hafniense Y51]
gi|423072846|ref|ZP_17061595.1| putative ATP-dependent RNA helicase RhlE [Desulfitobacterium
hafniense DP7]
gi|89335948|dbj|BAE85543.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361856461|gb|EHL08364.1| putative ATP-dependent RNA helicase RhlE [Desulfitobacterium
hafniense DP7]
Length = 478
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 13/246 (5%)
Query: 243 NLQYEPTDCPKQRHKY-SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP 301
N Y T C K+ + + G + EL + + ++L Q + + IQA A P
Sbjct: 28 NFLYNDTKCKKKTTNFINIKGLKVKQVLLNELKIINPIQKALAAQGYSEATPIQAEAIPH 87
Query: 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361
++EG + Q+G+GKT A+ +P++Q L QGL K R ++LAPT ELA+Q+
Sbjct: 88 LLEGLDLLGCAQTGTGKTAAFAIPILQSLAMG--QGLLKGKR-QIRALVLAPTRELATQI 144
Query: 362 LSNCRSLSKCGV--PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLI 419
S + GV P R++V+ GG Q Q L++G+D+L+ATPGR + LI +G + L
Sbjct: 145 ---AESFTAYGVNLPLRTLVIFGGVGQAPQTRKLEKGIDILVATPGRLLDLINQGFIDLS 201
Query: 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--C 477
++ +LDE D + D ++ +I+ P Q + +AT+PVEI KL +
Sbjct: 202 HVEHFVLDETDQML-DMGMLHDVKRIITYLPRERQNMLFSATMPVEI-EKLADTILKGPV 259
Query: 478 KVVMGP 483
K+ M P
Sbjct: 260 KIAMTP 265
>gi|51244788|ref|YP_064672.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
gi|50875825|emb|CAG35665.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
LSv54]
Length = 423
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 139/272 (51%), Gaps = 20/272 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S +++++ + + PS IQA A P ++EGK + A Q+G+GKT A+ LP+++
Sbjct: 2 SFNTLGLSAPLLKAVAEKGYDTPSPIQAKAIPVIMEGKDVMAAAQTGTGKTAAFTLPILE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q + + + RV+IL PT ELA+Q+ + + K G+ S V+ GG
Sbjct: 62 LLSQSK----RRVQANQARVLILTPTRELAAQIGESVTTYGK-GLSLTSAVIFGGVNINP 116
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q++ L+ GVD+L+ATPGR + L ++ ++ L +LDE D + D F ++ +++
Sbjct: 117 QMKRLRGGVDILVATPGRLLDLHRQNAIKFNRLEILVLDEADRML-DMGFINDIRKVLAF 175
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507
P Q L +AT I N +F + ++ + P + E + C + +
Sbjct: 176 LPKERQNLMFSATFSSSINNLARGMFNNPVEISVTPPNSTV-----EIIDQCIYPVDKKQ 230
Query: 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
P + L+QLI + +T+VF K
Sbjct: 231 KP--------ALLIQLIRDNKWGQTLVFSKTK 254
>gi|306840076|ref|ZP_07472862.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
gi|306404804|gb|EFM61097.1| DEAD-box ATP dependent DNA helicase [Brucella sp. NF 2653]
Length = 482
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|373853830|ref|ZP_09596629.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
gi|372473357|gb|EHP33368.1| DEAD/DEAH box helicase domain protein [Opitutaceae bacterium TAV5]
Length = 539
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 106/198 (53%), Gaps = 12/198 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F +LG +D + + + P+ IQA A P V+EG+ + Q+G+GKT A+ LPV+
Sbjct: 135 AFSKLGLNDAIAFAAAEMGYTDPTPIQAQAVPLVLEGRDVTGSAQTGTGKTAAFALPVLH 194
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL G R ++L PT ELA QV + SK + +V GG
Sbjct: 195 RL----------GAHGRLRCLVLEPTRELALQVEEAFQKYSKY-TDLTTTIVYGGVGYGK 243
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E+LQ GVDVL ATPGR + +++G L L ++ ILDEVD + D F ++ ++
Sbjct: 244 QREDLQRGVDVLAATPGRLLDHLEQGTLTLDSIEILILDEVDRML-DMGFLPDVKRIVQQ 302
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q LF +ATLP E+
Sbjct: 303 CPRERQTLFFSATLPPEL 320
>gi|288936404|ref|YP_003440463.1| DEAD/DEAH box helicase [Klebsiella variicola At-22]
gi|288891113|gb|ADC59431.1| DEAD/DEAH box helicase domain protein [Klebsiella variicola At-22]
Length = 451
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPDILRAVAEQGYVEPTPIQQQAIPAVMQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +E + R +IL PT ELA+QV N R SK + RS+VV GG
Sbjct: 62 RLIDKEPHAKGRRPV---RALILTPTRELAAQVGENVRDYSKY-LNIRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L ++ +LDE D + D F ++ +++
Sbjct: 118 QMMKLRGGVDILVATPGRLLDLEHQNAVSLDSVEILVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPARRQNLLFSATFSDEI 194
>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
Length = 434
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 114/199 (57%), Gaps = 11/199 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FKEL + ++++L++ + P+ IQ A P +++GK + Q+G+GKT A+ +P+IQ
Sbjct: 2 TFKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQK 387
RL Q + + K+ +IL PT ELA Q+ N +K GV + V+ GG QK
Sbjct: 62 RLYQSDYKKGIKA-------LILTPTRELAIQIGENFDQYAKYTGV--KHAVIFGGVPQK 112
Query: 388 TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447
Q++ L+ GV VLIATPGR + L +G + L L +LDE D + D F ++ ++
Sbjct: 113 AQVDALKRGVQVLIATPGRLLDLQSQGCISLKGLEYFVLDEADRML-DMGFIHDIKKVLK 171
Query: 448 SSPVTAQYLFVTATLPVEI 466
P Q LF +AT+P EI
Sbjct: 172 LIPARRQTLFFSATMPSEI 190
>gi|350533821|ref|ZP_08912762.1| hypothetical protein VrotD_21958 [Vibrio rotiferianus DAT722]
Length = 520
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNQVRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR + L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRML-DMGFIRDIRKILDLL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKERQNLLFSATFSNEI 192
>gi|139438943|ref|ZP_01772403.1| Hypothetical protein COLAER_01409 [Collinsella aerofaciens ATCC
25986]
gi|133775654|gb|EBA39474.1| DEAD/DEAH box helicase [Collinsella aerofaciens ATCC 25986]
Length = 749
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 142/287 (49%), Gaps = 31/287 (10%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG SD M+ +++ + P+ +QA + P V+EG+ + A Q+G+GKT A+LLP +
Sbjct: 47 AFDELGLSDEMLRAIENLGYTAPTPVQAGSIPVVLEGRDLLAAAQTGTGKTAAFLLPTMN 106
Query: 329 RLRQ------------EELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSKCGV 373
L + +K G+ P ++++ PT ELA Q+ ++
Sbjct: 107 NLEHIAPPKPVRERGGRNRRRGAKKPEGNGRGPVMLVITPTRELAQQIDEVAGKIADV-T 165
Query: 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433
++ V GG K Q L+ G D+L+ATPGR + LI++G L ++ +LDE D +
Sbjct: 166 GHVAVTVVGGVSYKPQTAALKYGCDILVATPGRLVDLIEQGACHLDEVKVLVLDEADRML 225
Query: 434 NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGL 492
D F A++ ++ +P Q L +ATL E ++ ++ D +V + P + +
Sbjct: 226 -DMGFLPAVRRIVRETPAERQTLLFSATLDEEAVGEITDLVSDPARVEIAPATS-TADTV 283
Query: 493 EEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
++F+ S + +++ PE FL K+ +TIVF K
Sbjct: 284 DQFVFPVSIEAKNNLLPE--FLKKEGP----------ERTIVFMRTK 318
>gi|449458179|ref|XP_004146825.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Cucumis
sativus]
gi|449476660|ref|XP_004154799.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Cucumis
sativus]
Length = 505
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 148/290 (51%), Gaps = 20/290 (6%)
Query: 253 KQRHKYSADGDFFSR--KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCIL 310
+QR + + +G + KSF+++G DY+++ + + F P+ IQ+ +P ++G+ I
Sbjct: 82 RQRREITVEGRDVPKPVKSFRDVGFPDYVMQEIAKAGFTEPTPIQSQGWPMALKGRDLIG 141
Query: 311 ADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370
++GSGKTLAYLLP I + + + S P V++LAPT ELA Q+
Sbjct: 142 IAETGSGKTLAYLLPAIVHVNAQPIL----SPGDGPIVLVLAPTRELAVQIQQEATKFGA 197
Query: 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430
++ V GG + Q+ +LQ+GV+++IATPGR + +++ L + +LDE D
Sbjct: 198 SS-KIKNTCVYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEAD 256
Query: 431 ILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE-VFPDCKVVMGPGMHRIS 489
+ D F+ ++ ++S Q L+ +AT P E+ + ++ KV++G S
Sbjct: 257 RML-DMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIG------S 309
Query: 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
P L+ + + Q D E NK LL+ I S+ ++F + K
Sbjct: 310 PDLK---ANHAIRQHVDIVSENQKYNKLVKLLEDIMDG--SRILIFMDTK 354
>gi|384172779|ref|YP_005554156.1| ATP-dependent RNA helicase [Arcobacter sp. L]
gi|345472389|dbj|BAK73839.1| ATP-dependent RNA helicase [Arcobacter sp. L]
Length = 448
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 111/201 (55%), Gaps = 13/201 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG ++ ++K + + P+ IQA + P ++ K + Q+G+GKT + LP++Q
Sbjct: 2 SFSKLGLCSEILRAIKEEGYTTPTPIQAQSIPVILLKKDVLAGAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGS---PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
RL +KSTS P+ +IL PT ELA+QV + + K +PF+S V+ GG
Sbjct: 62 RL--------TKSTSKDSKYPKALILTPTRELAAQVAQSVETYGKY-LPFKSAVIFGGVG 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q L++GVD++IATPGR + LI + L L + ILDE D + D F ++ +
Sbjct: 113 INPQKALLKKGVDIIIATPGRLLDLISQDSLNLSKIEFLILDEADRML-DMGFINDIKKI 171
Query: 446 ISSSPVTAQYLFVTATLPVEI 466
++ P Q L +AT EI
Sbjct: 172 LAILPKQRQNLLFSATFSTEI 192
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 23/285 (8%)
Query: 255 RHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQS 314
R +S+D + +F++LG D + ++L+ + + P IQ+MA P + G I ++
Sbjct: 10 RSTHSSD-----QTTFRDLGVIDDIADALEAEGIVAPFPIQSMALPLALTGADIIGQART 64
Query: 315 GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374
G+GKT A+ LP++QR+ + ++ PR +++ PT ELA QV ++ + SK +
Sbjct: 65 GTGKTFAFGLPLLQRVHTQ------PGSAKRPRALVVVPTRELAIQVAADLATASK-RID 117
Query: 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434
R V GG + Q+ L++GVD+++ TPGR + L+K+ L L + +LDE D +
Sbjct: 118 VRIATVYGGRAYEPQISALRKGVDIVVGTPGRLLDLVKQRHLILSEVTALVLDEADKML- 176
Query: 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEE 494
D F ++ +++ +P Q + +AT+P EI V K + P R E+
Sbjct: 177 DLGFLPDIERILAKTPDQRQTMLFSATMPSEI------VALSRKYLRRPTHIRA----ED 226
Query: 495 FLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
+D Q + T L+K L +L++ T+VFC K
Sbjct: 227 DPLDTGSGQVTQHVFRTHPLDKLEMLARLLQARNRGLTMVFCQTK 271
>gi|307191878|gb|EFN75297.1| Probable ATP-dependent RNA helicase DDX5 [Harpegnathos saltator]
Length = 465
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 126/270 (46%), Gaps = 14/270 (5%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+E G DY++ ++RQ F P+ IQA +P + G+ + Q+GSGKTLAY+LP I
Sbjct: 49 FEEGGFPDYVLNEIRRQGFGEPTAIQAQGWPIALSGRDMVGIAQTGSGKTLAYILPAIVH 108
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + S + P +ILAPT ELA Q+ R+ + GG + Q
Sbjct: 109 INHQP----RLSRNDGPIALILAPTRELAQQIQQVASDFGMSS-QVRNTCIFGGAPKGPQ 163
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+L+ GV++ IATPGR + ++ G L +LDE D + D FE ++ ++
Sbjct: 164 ARDLERGVEICIATPGRLIDFLERGTTNLRRCTYLVLDEADRML-DMGFEPQIRKIVEQI 222
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
Q L +AT P E+ N E D +I+ G + + + Q D
Sbjct: 223 RPDRQTLMWSATWPKEVRNLAEEFLTDYI--------QINIGSLQLAANHNILQIVDVCE 274
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E K LL+ I P +KTI+F K
Sbjct: 275 EYEKEGKLMKLLEEISNEPENKTIIFVETK 304
>gi|383451257|ref|YP_005357978.1| putative ATP-dependent RNA helicase RhlE [Flavobacterium indicum
GPTSA100-9]
gi|380502879|emb|CCG53921.1| Putative ATP-dependent RNA helicase RhlE [Flavobacterium indicum
GPTSA100-9]
Length = 447
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 141/273 (51%), Gaps = 25/273 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F++L + +++ F P+ IQ+ AFP V+ G+ + Q+G+GKT AYLLP+
Sbjct: 3 TFQDLNLPASLQKAIDELGFTNPTPIQSKAFPYVMSGRDVMGIAQTGTGKTFAYLLPI-- 60
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L+Q + Q + +PRV+IL PT EL QV L+K + RS+ V GG T
Sbjct: 61 -LKQWKFQ-----KTDTPRVLILVPTRELVVQVKEELDKLTKY-MSVRSLAVYGGVNINT 113
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q + EG+D+++ TPGR M L + +L+ N++ ++DE D + N F V L S++S
Sbjct: 114 QKTAVYEGLDIVVGTPGRVMDLALDNVLRFDNIQKLVIDEFDEILN-LGFRVQLVSILSM 172
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506
Q + +AT+ E+ + L E FP+ +V + P LE+ +Q
Sbjct: 173 MKSKRQNIMFSATMTEEVDDVLDEFFEFPE-EVSLAPS----GTPLEKI------EQRLY 221
Query: 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
KTP FL K + + + S+ ++F N K
Sbjct: 222 KTPN--FLTKLNIVKHFLADEAYSRILLFVNSK 252
>gi|326405112|ref|YP_004285194.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
gi|325051974|dbj|BAJ82312.1| ATP-dependent RNA helicase RhlE [Acidiphilium multivorum AIU301]
Length = 470
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 135/270 (50%), Gaps = 18/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG ++ ++ ++ Q++ P+ IQA + P ++EG + Q+G+GKT A++LP++ R
Sbjct: 4 FTTLGLAEPLLRAISEQSYETPTPIQARSIPVMLEGHDLVGIAQTGTGKTAAFVLPILHR 63
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
+ + ++ R ++LAPT ELA+Q+ R+ K P ++V+ GG + Q
Sbjct: 64 IAANRARPAPRAC----RALVLAPTRELATQIADAARTYGKFTRPSVAVVI-GGAKPGPQ 118
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
++ GVD+L+ATPGR + + G+++L + +LDE D + D F A++ +++
Sbjct: 119 ARRMESGVDLLVATPGRLLDHVAAGVIRLDAVETVVLDEADQML-DLGFIPAIRQIMAKL 177
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q + +AT+P I E D + ++ +E VD Q P
Sbjct: 178 PRQRQAVMFSATMPKPIRALAGEFLRDPR--------EVAVSVESKPVDRIDQQVLLLAP 229
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E KK L L+ V + IVF K
Sbjct: 230 E----EKKDKLAWLLADVAVERAIVFTRTK 255
>gi|386773104|ref|ZP_10095482.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 536
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 7/205 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG + +L P+ IQA P + G+ + ++GSGKT A+LLP++ R
Sbjct: 6 FARLGVPASLTAALAPLGITSPTPIQAATLPDSLSGRDVLGRGRTGSGKTYAFLLPLVAR 65
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L L+ + T+ PR ++LAPT ELASQ+ + + L K RS VV GG Q Q
Sbjct: 66 L----LETPKRRTARRPRSLVLAPTRELASQIADSLKPLEKA-AGLRSAVVFGGVGQNPQ 120
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L GVDVLIA PGR + L+ +G L + ++DE D + D F ++ ++ ++
Sbjct: 121 VNALAGGVDVLIACPGRLLDLMGQGHADLGAIEITVIDEADHM-ADMGFLPMVRRILEAT 179
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVF 474
P Q + +ATL + NKLV+ F
Sbjct: 180 PRRGQRMLFSATLDSGV-NKLVKEF 203
>gi|337278789|ref|YP_004618260.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729865|gb|AEG92241.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 606
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 117/210 (55%), Gaps = 5/210 (2%)
Query: 259 SADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGK 318
+ DG F +F EL + ++++++ Q + P+ IQA A P V+EG + Q+G+GK
Sbjct: 4 ATDGAHFM--TFDELKLAPAILKAVREQGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGK 61
Query: 319 TLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378
T A+ LP++ +L + + + +K ++L PT ELA+QV + R+ K +P S
Sbjct: 62 TAAFTLPMLHKLTKGQGK-TNKFGKDGIAALVLTPTRELAAQVEESIRTYGKY-LPLTST 119
Query: 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF 438
V+ GG Q++ ++ GVD+L+ATPGR + L ++G L L + +LDE D + D F
Sbjct: 120 VIFGGVGMNPQIDRIKRGVDILVATPGRLLDLQQQGHLDLSTVEVLVLDEADRML-DMGF 178
Query: 439 EVALQSLISSSPVTAQYLFVTATLPVEIYN 468
++ +++ P Q L +AT EI +
Sbjct: 179 LPDVKKILALVPRDKQSLLFSATFSDEIRD 208
>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
Length = 613
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 3/198 (1%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F+EL + ++++++ Q + P+ IQA A P V+ G + Q+G+GKT A+ LP++Q
Sbjct: 2 TFEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL +K R ++L PT ELA+QV N R +K + S V+ GG K
Sbjct: 62 RLASGAAP-KNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKY-LDITSTVIFGGVGMKP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ +++GVDVL+ATPGR + L +G + L + ILDE D + D F ++ +++
Sbjct: 120 QIARIEKGVDVLVATPGRLLDLAGQGFMDLSTVEMLILDEADRML-DMGFIHDVKKVLAL 178
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 179 VPKDKQSLLFSATFSDEI 196
>gi|225627424|ref|ZP_03785461.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|261222116|ref|ZP_05936397.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261758136|ref|ZP_06001845.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|265998081|ref|ZP_06110638.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
gi|225617429|gb|EEH14474.1| ATP-dependent RNA helicase dbp2 [Brucella ceti str. Cudo]
gi|260920700|gb|EEX87353.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
B1/94]
gi|261738120|gb|EEY26116.1| ATP-dependent RNA helicase [Brucella sp. F5/99]
gi|262552549|gb|EEZ08539.1| DEAD/DEAH box helicase domain-containing protein [Brucella ceti
M490/95/1]
Length = 435
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/276 (32%), Positives = 139/276 (50%), Gaps = 26/276 (9%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+F ELG S +I +++ + P+ IQA A PP +E K + Q+G+GKT +++LP++
Sbjct: 3 TFAELGLSPKVIAAVEAAGYTAPTPIQAGAIPPALERKDVLGIAQTGTGKTASFVLPMLT 62
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--VTGGFRQ 386
L + ++ + PR +IL PT ELA+QV N K G+ R V + GG
Sbjct: 63 LLEK------GRARARMPRTLILEPTRELAAQVEEN---FVKYGINHRLNVALLIGGVSF 113
Query: 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446
+ Q L+ G DVLIATPGR + + G L L + ++DE D + D F ++ +
Sbjct: 114 EEQERKLERGADVLIATPGRMLDHFERGKLLLTGVEILVIDEADRML-DMGFIPDIERIC 172
Query: 447 SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKV-VMGPGMHRISPGLEEFLVDCSGDQES 505
P T Q LF +AT+P EI KL E F V + + + + LV SG ++
Sbjct: 173 KLIPFTRQTLFFSATMPPEI-TKLTEQFLHSPVRIEVAKASSTAKTVTQRLVK-SGKKDW 230
Query: 506 DKTPETAFLNKKSALLQLI--EKSPVSKTIVFCNKK 539
D K++ L LI E + I+FCN+K
Sbjct: 231 D---------KRAVLRDLIQSEGDSLKNAIIFCNRK 257
>gi|116268057|ref|NP_001070800.1| probable ATP-dependent RNA helicase DDX28 [Danio rerio]
gi|115528124|gb|AAI24669.1| Zgc:153386 [Danio rerio]
Length = 558
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 160/330 (48%), Gaps = 40/330 (12%)
Query: 233 RGWRSGG------SIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQ 286
+GW+S SI+++Q P PK + + DG S+K+F ++E+L+RQ
Sbjct: 111 KGWKSNRALGDYFSINSIQSAPPFVPKHKDE-GDDGASASKKTFHCFNLCPELVETLQRQ 169
Query: 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346
N + P+ +Q P +++G++ + A ++GSGKTL YLLP+I RL+++ L G +S
Sbjct: 170 NIIHPTTVQLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQEDLLAGSERSI---- 225
Query: 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGR 406
R V++ P+ ELA QV S RS+S+ +V G + + D+L++TPG
Sbjct: 226 RAVVIVPSRELAEQVNSVARSVSERFGLVVKVVGGGRGVGTIKAAFARGQPDILVSTPGA 285
Query: 407 FMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT------------AQ 454
+ + + + L L ++DE D +F+D F L+ ++S + V AQ
Sbjct: 286 LLKALWKRFISLSELYFLVIDEADTMFDD-SFAGMLEKILSHTQVASRLSETIGLARKAQ 344
Query: 455 YLFVTATLPVEIYNKLVEV--FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512
+ V AT P + + L + V +H + P +++ + G +DK E
Sbjct: 345 LVVVGATFPGGVGDVLSKATDLASISTVKSRMLHHLMPHIKQTFLRVKG---ADKILE-- 399
Query: 513 FLNKKSALLQLIEKSPVSK--TIVFCNKKS 540
L Q ++++ + +VFCN S
Sbjct: 400 -------LHQALKRAEQEQKGVLVFCNSAS 422
>gi|193212728|ref|YP_001998681.1| DEAD/DEAH box helicase domain-containing protein [Chlorobaculum
parvum NCIB 8327]
gi|193086205|gb|ACF11481.1| DEAD/DEAH box helicase domain protein [Chlorobaculum parvum NCIB
8327]
Length = 427
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 134/270 (49%), Gaps = 18/270 (6%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG D ++++L + + P+ IQA A P ++EG + Q+G+GKT A+ LP++Q
Sbjct: 3 FSALGLIDPLLKALDEEGYSSPTPIQAEAIPLLLEGHDLLGCAQTGTGKTAAFALPILQL 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L Q++ G + R ++L PT ELA Q+ + + + +S V+ GG Q Q
Sbjct: 63 LHQDQEHGRKRKI----RCLVLTPTRELALQIGESFEAYGRH-TGLKSTVIFGGVNQNPQ 117
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
L GVD+L+ATPGR + L+ + L L ++ +LDE D + D F ++ ++++
Sbjct: 118 TRTLAGGVDILVATPGRLLDLMGQEHLHLRDIEYFVLDEADRML-DMGFIHDVKKVLAAL 176
Query: 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509
P Q LF +AT+P I N + K V + + + + ++ D+E
Sbjct: 177 PKKKQSLFFSATMPPAIVNLAASILHQPKKVTVTPVSSTAEIINQHILFV--DRE----- 229
Query: 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
NK S L L++ +S + F K
Sbjct: 230 -----NKNSLLEHLLQNRDISSVLAFTRTK 254
>gi|384430474|ref|YP_005639834.1| DEAD/DEAH box helicase [Thermus thermophilus SG0.5JP17-16]
gi|333965942|gb|AEG32707.1| DEAD/DEAH box helicase domain protein [Thermus thermophilus
SG0.5JP17-16]
Length = 510
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
FK+ ++E+L + P+ IQA A P +EGK I ++G+GKTLA+ LP+ +
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
RL S+ PR ++LAPT ELA QV S LS + + V GG
Sbjct: 62 RL------APSQERGRKPRALVLAPTRELALQVASE---LSSVAPHLKVVAVYGGTGYGK 112
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q E L G D ++ATPGR + +++G+L L + A+LDE D + + FE +++L+S+
Sbjct: 113 QKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS-MGFEEEVEALLSA 171
Query: 449 SPVTAQYLFVTATLP 463
+P Q L +ATLP
Sbjct: 172 TPPFRQTLLFSATLP 186
>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
Length = 446
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG S+ +++++ + + PS IQA A P V+EG+ + A Q+G+GKT + LP+
Sbjct: 2 SFSTLGLSESLLKAVADEGYTTPSPIQAQAIPAVLEGRDVMAAAQTGTGKTAGFTLPL-- 59
Query: 329 RLRQEELQGLSKSTSGSP---RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385
L GLSK S R ++L PT ELA+QV + K + RS VV GG +
Sbjct: 60 ------LHGLSKGQSAKANQVRALVLTPTRELAAQVAESVDIYGKY-LNLRSAVVFGGVK 112
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
Q+ L++GVD+LIATPGR + L ++ + L ILDE D + D F ++ +
Sbjct: 113 INPQMMRLRKGVDILIATPGRLLDLYQQNAMSFQKLEVLILDEADRML-DMGFIHDIRRI 171
Query: 446 ISSSPVTAQYLFVTATLPVEI 466
+ + P Q L +AT +I
Sbjct: 172 MKALPNKRQNLMFSATFSEDI 192
>gi|307183175|gb|EFN70084.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
Length = 705
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 134/276 (48%), Gaps = 22/276 (7%)
Query: 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVI 327
++F+E DY++E +K+Q F P+ IQA +P + G+ + Q+GSGKTLAY+LP
Sbjct: 109 QAFEESNFPDYVMEEIKKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPAT 168
Query: 328 QRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL--SKCGVPFRSMVVTGGFR 385
+ + + P V+ILAPT ELA Q+ + R S C R+ + GG
Sbjct: 169 VHINHQP----RLNRGDGPIVLILAPTRELAQQIQTVARDFGSSSC---IRNTCIFGGSP 221
Query: 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445
+ Q +L+ GV++ IATPGR + +++G L +LDE D + D FE ++ +
Sbjct: 222 KGPQARDLERGVEICIATPGRLIDFLEKGTTNLRRCTYLVLDEADRML-DMGFEPQIRKI 280
Query: 446 ISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISP--GLEEFLVDCSGDQ 503
I Q L +AT P E+ L E F + + G ++ + + + C Q
Sbjct: 281 IEQIRPDRQVLMWSATWPKEV-QALAEDFLTDYIQINIGSLSLAANHNIRQIIEIC---Q 336
Query: 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
E +K K S LL+ I SK I+F K
Sbjct: 337 EHEKE------YKLSQLLREIGTERGSKMIIFVETK 366
>gi|159903626|ref|YP_001550970.1| ATP-dependent RNA helicase [Prochlorococcus marinus str. MIT 9211]
gi|159888802|gb|ABX09016.1| putative ATP-dependent RNA helicase [Prochlorococcus marinus str.
MIT 9211]
Length = 604
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 113/200 (56%), Gaps = 16/200 (8%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F+ G SD +I +L+ + + P+ IQ AFP ++ G+ + Q+G+GKT A+ LP+++R
Sbjct: 54 FEGFGFSDDLINTLESKGYKDPTPIQKAAFPELMLGRDLLGQAQTGTGKTAAFALPILER 113
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
++Q+ + +P+V++LAPT ELA QV + R+ ++ + + V GG + Q
Sbjct: 114 IKQD---------TRAPQVLVLAPTRELAMQVADSFRAYAQGRPEVQVLAVYGGSDFRAQ 164
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSLI 446
+ L+ GV +++ TPGR M I++G +L +LDE D + +D E L+ L
Sbjct: 165 INALRRGVQIVVGTPGRVMDHIRQGTFIKTDLETLVLDEADEMLRMGFIDDIEWILEQL- 223
Query: 447 SSSPVTAQYLFVTATLPVEI 466
P Q +F +AT+P EI
Sbjct: 224 ---PAKRQMIFFSATMPSEI 240
>gi|424045995|ref|ZP_17783558.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
gi|408885826|gb|EKM24535.1| type III restriction enzyme, res subunit [Vibrio cholerae HENC-03]
Length = 516
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQR 329
F LG S ++++++ + + PS IQA A P V+EGK + A Q+G+GKT + LP+++R
Sbjct: 3 FTSLGLSAPILKAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPILER 62
Query: 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ 389
L + S R ++L PT ELA+QV N S+ +P S VV GG + Q
Sbjct: 63 LSNG-----PRVRSNQVRALVLTPTRELAAQVQENVFMYSRH-LPLTSAVVFGGVKINPQ 116
Query: 390 LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449
+ L++G DVL+ATPGR + L + ++ L +LDE D + D F ++ ++
Sbjct: 117 MLRLRKGADVLVATPGRLLDLYNQNAVKFDQLEMLVLDEADRML-DMGFIRDIRKILDLL 175
Query: 450 PVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 176 PKQRQNLLFSATFSDEI 192
>gi|423128237|ref|ZP_17115916.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
gi|376393593|gb|EHT06249.1| ATP-dependent RNA helicase rhlE [Klebsiella oxytoca 10-5250]
Length = 449
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 5/198 (2%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF LG + ++ ++ Q ++ P+ IQ A P V++G+ + + Q+G+GKT + LP++Q
Sbjct: 2 SFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L Q+E + R +IL PT ELA+Q+ N R SK + RS+VV GG
Sbjct: 62 HLVQKEPHAKGRRPV---RALILTPTRELAAQIGENVRDYSKY-LNVRSLVVFGGVSINP 117
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVD+L+ATPGR + L + + L + +LDE D + D F ++ +++
Sbjct: 118 QMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRML-DMGFIHDIRRVLAK 176
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 177 LPAKRQNLLFSATFSDEI 194
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 111/198 (56%), Gaps = 7/198 (3%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
SF +LG S ++++++ Q + PS IQA A P ++EG+ + A Q+G+GKT + LP+++
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLE 65
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L + E + S R ++L PT ELA+QV + ++ + + +S VV GG +
Sbjct: 66 ILSKGE-----NAQSNQVRALVLTPTRELAAQVAESVKNYGQH-LSLKSTVVFGGVKINP 119
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ G D+LIATPGR M L + ++ L +LDE D + D F ++ +++
Sbjct: 120 QMMALRRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRML-DMGFIHDIKKILAI 178
Query: 449 SPVTAQYLFVTATLPVEI 466
P Q L +AT EI
Sbjct: 179 LPKKRQNLLFSATFSPEI 196
>gi|440748527|ref|ZP_20927779.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
gi|436483035|gb|ELP39111.1| ATP-dependent RNA helicase RhlE [Mariniradius saccharolyticus AK6]
Length = 410
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 138/271 (50%), Gaps = 20/271 (7%)
Query: 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQ 328
+FK LG D ++++L ++ + P+ IQ A P V++G+ + Q+G+GKT A+ +P+IQ
Sbjct: 2 AFKNLGIIDPILQALAQEGYTTPTPIQQQAIPIVLQGRDLLGCAQTGTGKTAAFAIPIIQ 61
Query: 329 RLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388
L ++ K + +IL PT ELA Q+ + + + V+ GG Q
Sbjct: 62 HLAEK------KQHRPGIKALILTPTRELAIQIDESFAAYGRFA-KISHTVIFGGVSQLH 114
Query: 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448
Q+ L+ GVDVL+ATPGR + LI + + L L +LDE D + D F ++ +I+
Sbjct: 115 QVNALKRGVDVLVATPGRLLDLIGQKYIDLSKLEIFVLDEADRML-DMGFIHDVKKVIAL 173
Query: 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508
P Q LF +AT+P EI KL + ++ P + ++P + D+ +
Sbjct: 174 LPSKRQTLFFSATMPPEI-QKLAD-----SLLTHPALVEVTPP------SSTVDKIEQRL 221
Query: 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539
T +K + LL L+++ + +VF K
Sbjct: 222 YYTNKGDKPALLLYLLQEKKIGSALVFTRTK 252
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,840,825,224
Number of Sequences: 23463169
Number of extensions: 401535425
Number of successful extensions: 1359149
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 21894
Number of HSP's successfully gapped in prelim test: 5327
Number of HSP's that attempted gapping in prelim test: 1286836
Number of HSP's gapped (non-prelim): 32816
length of query: 540
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 392
effective length of database: 8,886,646,355
effective search space: 3483565371160
effective search space used: 3483565371160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)