Query 009212
Match_columns 540
No_of_seqs 298 out of 2192
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 21:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 5.4E-47 1.2E-51 383.4 20.2 251 266-539 59-310 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 2.7E-46 5.8E-51 398.9 25.7 256 267-539 90-351 (519)
3 COG0513 SrmB Superfamily II DN 100.0 1.7E-43 3.6E-48 387.5 28.5 253 268-539 29-283 (513)
4 KOG0338 ATP-dependent RNA heli 100.0 8.6E-44 1.9E-48 369.4 17.4 255 268-539 181-436 (691)
5 KOG0328 Predicted ATP-dependen 100.0 1.6E-42 3.4E-47 338.4 18.0 255 264-540 23-277 (400)
6 KOG0333 U5 snRNP-like RNA heli 100.0 4.6E-42 1E-46 357.7 22.5 295 218-540 209-528 (673)
7 KOG0341 DEAD-box protein abstr 100.0 7.7E-44 1.7E-48 359.4 8.1 303 222-539 122-431 (610)
8 PTZ00110 helicase; Provisional 100.0 1.5E-40 3.2E-45 367.1 29.4 256 267-540 129-388 (545)
9 KOG0326 ATP-dependent RNA heli 100.0 3.9E-42 8.5E-47 340.3 13.7 248 268-539 85-332 (459)
10 PRK04837 ATP-dependent RNA hel 100.0 6.7E-40 1.4E-44 351.9 29.7 257 267-539 7-265 (423)
11 KOG0339 ATP-dependent RNA heli 100.0 5.2E-40 1.1E-44 340.8 26.9 258 265-539 220-478 (731)
12 KOG0342 ATP-dependent RNA heli 100.0 1.3E-40 2.8E-45 345.6 22.2 256 266-539 80-340 (543)
13 PRK11776 ATP-dependent RNA hel 100.0 7.6E-40 1.6E-44 355.1 28.7 249 268-539 4-252 (460)
14 KOG0343 RNA Helicase [RNA proc 100.0 1.5E-40 3.3E-45 347.8 20.6 253 267-539 68-323 (758)
15 PRK10590 ATP-dependent RNA hel 100.0 1.5E-39 3.3E-44 352.3 28.5 254 269-539 2-255 (456)
16 PRK11634 ATP-dependent RNA hel 100.0 2.3E-39 5E-44 361.7 29.5 250 268-539 6-255 (629)
17 PLN00206 DEAD-box ATP-dependen 100.0 4.2E-39 9.1E-44 353.9 31.0 257 267-540 120-378 (518)
18 KOG0345 ATP-dependent RNA heli 100.0 1.1E-39 2.5E-44 336.6 24.5 255 268-539 4-265 (567)
19 PRK04537 ATP-dependent RNA hel 100.0 2.8E-39 6E-44 358.5 28.8 257 268-540 9-268 (572)
20 KOG0348 ATP-dependent RNA heli 100.0 6E-40 1.3E-44 342.5 19.9 263 262-540 130-436 (708)
21 KOG0346 RNA helicase [RNA proc 100.0 9E-40 2E-44 334.8 20.3 257 268-540 19-279 (569)
22 KOG0336 ATP-dependent RNA heli 100.0 3.9E-39 8.5E-44 327.3 24.3 255 267-539 218-475 (629)
23 KOG0335 ATP-dependent RNA heli 100.0 4.9E-40 1.1E-44 345.9 18.2 259 268-540 74-348 (482)
24 PRK11192 ATP-dependent RNA hel 100.0 5.6E-38 1.2E-42 337.9 30.2 254 269-540 2-256 (434)
25 PRK01297 ATP-dependent RNA hel 100.0 6.2E-37 1.3E-41 333.6 28.8 257 268-540 87-346 (475)
26 KOG0347 RNA helicase [RNA proc 100.0 2.1E-38 4.6E-43 331.7 15.4 258 268-540 181-474 (731)
27 KOG0334 RNA helicase [RNA proc 100.0 5.8E-38 1.3E-42 350.1 19.2 257 266-539 363-623 (997)
28 KOG0340 ATP-dependent RNA heli 100.0 1.7E-37 3.6E-42 311.4 18.2 250 267-539 6-264 (442)
29 PTZ00424 helicase 45; Provisio 100.0 1.2E-35 2.6E-40 315.8 28.8 252 267-540 27-278 (401)
30 KOG0332 ATP-dependent RNA heli 100.0 5E-37 1.1E-41 309.5 16.0 257 260-540 82-341 (477)
31 KOG0337 ATP-dependent RNA heli 100.0 2.1E-36 4.6E-41 308.8 16.2 250 268-539 21-271 (529)
32 KOG0327 Translation initiation 100.0 9.6E-36 2.1E-40 302.4 14.3 249 267-540 25-274 (397)
33 KOG4284 DEAD box protein [Tran 100.0 4E-35 8.7E-40 311.1 16.3 259 267-539 24-282 (980)
34 KOG0329 ATP-dependent RNA heli 100.0 1.1E-34 2.4E-39 280.0 13.5 251 268-539 42-293 (387)
35 cd00268 DEADc DEAD-box helicas 100.0 1.4E-30 3E-35 251.3 25.0 202 270-480 1-202 (203)
36 TIGR03817 DECH_helic helicase/ 100.0 1.9E-30 4.1E-35 295.3 27.3 247 274-540 20-282 (742)
37 KOG0350 DEAD-box ATP-dependent 100.0 5.1E-31 1.1E-35 274.2 19.1 250 269-540 128-440 (620)
38 PRK00254 ski2-like helicase; P 100.0 7.5E-29 1.6E-33 282.7 26.2 189 269-476 2-191 (720)
39 PRK02362 ski2-like helicase; P 100.0 6.1E-29 1.3E-33 284.1 23.7 187 269-475 2-192 (737)
40 KOG0344 ATP-dependent RNA heli 100.0 1.4E-28 3E-33 261.3 15.6 260 266-540 130-398 (593)
41 PRK13767 ATP-dependent helicas 100.0 2.9E-27 6.3E-32 273.9 27.2 191 275-470 18-227 (876)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-27 3.2E-32 269.0 23.9 227 286-540 12-283 (844)
43 COG1201 Lhr Lhr-like helicases 100.0 2.2E-27 4.7E-32 266.4 23.1 249 275-540 8-264 (814)
44 PRK09401 reverse gyrase; Revie 100.0 8.4E-27 1.8E-31 274.4 26.4 224 282-539 72-338 (1176)
45 PRK01172 ski2-like helicase; P 99.9 1E-26 2.2E-31 263.6 22.3 187 269-476 2-191 (674)
46 PRK14701 reverse gyrase; Provi 99.9 1.9E-25 4.1E-30 268.3 26.8 233 277-540 66-341 (1638)
47 PF00270 DEAD: DEAD/DEAH box h 99.9 8.8E-26 1.9E-30 210.5 18.5 165 292-468 1-168 (169)
48 TIGR00614 recQ_fam ATP-depende 99.9 2.5E-25 5.5E-30 242.2 24.5 217 286-540 7-237 (470)
49 PLN03137 ATP-dependent DNA hel 99.9 3.5E-25 7.6E-30 253.5 24.4 236 268-540 435-691 (1195)
50 TIGR01054 rgy reverse gyrase. 99.9 1.3E-24 2.9E-29 256.1 24.7 229 277-539 65-336 (1171)
51 PRK11057 ATP-dependent DNA hel 99.9 4.4E-24 9.6E-29 239.0 24.5 226 276-540 10-247 (607)
52 TIGR01389 recQ ATP-dependent D 99.9 5.2E-24 1.1E-28 238.1 24.5 219 282-539 4-234 (591)
53 COG1204 Superfamily II helicas 99.9 1E-23 2.2E-28 239.0 19.3 183 275-476 16-202 (766)
54 PRK10689 transcription-repair 99.9 1.2E-22 2.6E-27 239.0 26.1 220 279-539 590-819 (1147)
55 TIGR00580 mfd transcription-re 99.9 2.3E-22 4.9E-27 232.2 26.6 225 275-540 436-671 (926)
56 PRK09751 putative ATP-dependen 99.9 1.1E-22 2.3E-27 241.2 21.7 171 310-482 1-189 (1490)
57 PRK10917 ATP-dependent DNA hel 99.9 5.5E-22 1.2E-26 224.8 25.9 166 277-467 248-424 (681)
58 COG1205 Distinct helicase fami 99.9 6.6E-22 1.4E-26 227.0 26.0 250 276-540 56-317 (851)
59 KOG0349 Putative DEAD-box RNA 99.9 2.5E-23 5.5E-28 213.4 12.0 194 345-539 286-515 (725)
60 KOG0952 DNA/RNA helicase MER3/ 99.9 2.5E-22 5.4E-27 223.9 18.8 242 286-540 106-360 (1230)
61 TIGR00643 recG ATP-dependent D 99.9 1.9E-21 4.1E-26 218.8 24.5 164 278-465 224-399 (630)
62 COG1202 Superfamily II helicas 99.9 2.2E-21 4.7E-26 205.3 18.4 241 269-540 195-451 (830)
63 PHA02653 RNA helicase NPH-II; 99.9 1.1E-20 2.5E-25 211.7 22.8 225 293-539 167-405 (675)
64 TIGR03158 cas3_cyano CRISPR-as 99.9 4.3E-20 9.3E-25 194.5 21.6 164 294-473 1-202 (357)
65 TIGR01587 cas3_core CRISPR-ass 99.8 2.8E-20 6.1E-25 195.3 17.5 152 307-474 1-177 (358)
66 PRK12899 secA preprotein trans 99.8 2.4E-20 5.1E-25 210.4 15.8 150 270-434 64-229 (970)
67 PRK11664 ATP-dependent RNA hel 99.8 2.1E-19 4.7E-24 205.9 23.4 210 296-539 11-222 (812)
68 TIGR01970 DEAH_box_HrpB ATP-de 99.8 4.2E-19 9E-24 203.3 23.8 211 295-539 7-219 (819)
69 smart00487 DEXDc DEAD-like hel 99.8 1.2E-18 2.6E-23 163.8 20.9 186 285-482 3-190 (201)
70 PRK12898 secA preprotein trans 99.8 1.6E-17 3.4E-22 184.5 21.1 130 286-433 100-255 (656)
71 COG0514 RecQ Superfamily II DN 99.8 6E-18 1.3E-22 184.7 17.2 222 281-539 7-240 (590)
72 PHA02558 uvsW UvsW helicase; P 99.8 6.1E-18 1.3E-22 185.8 16.2 151 288-465 112-262 (501)
73 PRK05580 primosome assembly pr 99.8 8.3E-17 1.8E-21 182.3 25.7 157 290-470 144-312 (679)
74 KOG0951 RNA helicase BRR2, DEA 99.7 2.4E-17 5.1E-22 186.4 16.1 250 274-540 295-557 (1674)
75 COG4581 Superfamily II RNA hel 99.7 6.4E-17 1.4E-21 185.0 18.1 179 283-483 113-293 (1041)
76 PRK09200 preprotein translocas 99.7 3.8E-16 8.3E-21 176.8 22.8 131 286-433 75-212 (790)
77 COG1111 MPH1 ERCC4-like helica 99.7 2.4E-16 5.2E-21 166.3 18.6 170 288-472 13-185 (542)
78 TIGR03714 secA2 accessory Sec 99.7 3.3E-16 7.2E-21 175.9 20.9 133 286-434 67-209 (762)
79 KOG0354 DEAD-box like helicase 99.7 1.2E-16 2.7E-21 176.7 15.9 177 276-466 48-225 (746)
80 PRK13766 Hef nuclease; Provisi 99.7 5.4E-16 1.2E-20 178.9 21.5 162 287-463 12-173 (773)
81 KOG0948 Nuclear exosomal RNA h 99.7 2E-16 4.4E-21 171.8 14.5 184 290-500 129-314 (1041)
82 KOG0947 Cytoplasmic exosomal R 99.7 7.8E-16 1.7E-20 170.8 17.1 173 285-483 293-467 (1248)
83 KOG0351 ATP-dependent DNA heli 99.7 1.3E-15 2.9E-20 174.9 19.3 229 278-540 251-496 (941)
84 PRK09694 helicase Cas3; Provis 99.7 3E-15 6.5E-20 172.1 20.9 175 288-474 284-492 (878)
85 cd00046 DEXDc DEAD-like helica 99.6 5.4E-15 1.2E-19 130.9 16.2 144 306-462 1-144 (144)
86 TIGR00963 secA preprotein tran 99.6 2.2E-15 4.8E-20 168.5 13.5 131 286-434 53-190 (745)
87 KOG2340 Uncharacterized conser 99.6 1.4E-15 3E-20 160.4 10.2 249 287-538 213-561 (698)
88 TIGR00595 priA primosomal prot 99.6 6.2E-14 1.3E-18 153.9 22.4 136 309-468 1-145 (505)
89 KOG0352 ATP-dependent DNA heli 99.6 3.7E-15 8E-20 153.7 11.4 183 278-482 6-208 (641)
90 KOG0353 ATP-dependent DNA heli 99.6 3.3E-14 7.2E-19 144.7 16.8 235 273-539 76-327 (695)
91 PRK11131 ATP-dependent RNA hel 99.6 8.9E-14 1.9E-18 163.6 22.6 207 296-539 80-296 (1294)
92 PRK12904 preprotein translocas 99.6 7.8E-14 1.7E-18 158.0 21.1 130 286-433 78-214 (830)
93 PRK13104 secA preprotein trans 99.6 2.4E-14 5.2E-19 162.4 14.3 127 290-433 82-215 (896)
94 TIGR00603 rad25 DNA repair hel 99.5 9.1E-14 2E-18 156.3 16.8 148 289-463 254-412 (732)
95 PF04851 ResIII: Type III rest 99.5 6.6E-14 1.4E-18 131.5 11.4 153 290-463 3-183 (184)
96 COG1061 SSL2 DNA or RNA helica 99.5 9.4E-14 2E-18 150.3 12.7 146 289-463 35-184 (442)
97 COG1200 RecG RecG-like helicas 99.4 5.8E-12 1.3E-16 138.3 21.0 222 275-539 247-483 (677)
98 TIGR01967 DEAH_box_HrpA ATP-de 99.4 6.5E-12 1.4E-16 148.4 22.9 220 286-539 60-289 (1283)
99 PF06862 DUF1253: Protein of u 99.4 1.7E-11 3.6E-16 131.0 17.5 195 341-538 33-309 (442)
100 COG1110 Reverse gyrase [DNA re 99.3 7.4E-11 1.6E-15 133.2 20.9 140 280-434 72-217 (1187)
101 TIGR01407 dinG_rel DnaQ family 99.3 1.7E-11 3.7E-16 142.8 16.5 145 276-433 232-453 (850)
102 COG4098 comFA Superfamily II D 99.3 1.1E-10 2.3E-15 118.6 19.6 211 290-540 97-316 (441)
103 PRK13107 preprotein translocas 99.3 6.5E-12 1.4E-16 142.5 9.2 129 290-435 82-217 (908)
104 KOG0950 DNA polymerase theta/e 99.3 3E-11 6.5E-16 135.7 13.6 185 274-477 206-400 (1008)
105 TIGR03117 cas_csf4 CRISPR-asso 99.2 7.6E-11 1.6E-15 131.6 15.2 124 300-433 11-219 (636)
106 PRK11448 hsdR type I restricti 99.2 9E-11 2E-15 138.9 16.0 161 289-464 412-596 (1123)
107 KOG0949 Predicted helicase, DE 99.2 5.4E-11 1.2E-15 133.1 12.0 159 290-463 511-672 (1330)
108 PRK07246 bifunctional ATP-depe 99.2 1.9E-10 4E-15 133.2 14.9 132 286-433 242-449 (820)
109 COG1198 PriA Primosomal protei 99.2 1.9E-09 4E-14 121.7 21.8 219 289-539 197-430 (730)
110 KOG0951 RNA helicase BRR2, DEA 99.2 1.8E-10 3.9E-15 131.7 12.6 223 288-540 1141-1370(1674)
111 COG1197 Mfd Transcription-repa 99.1 3.1E-09 6.7E-14 122.9 22.2 182 290-497 594-785 (1139)
112 COG1203 CRISPR-associated heli 99.1 4.1E-10 8.8E-15 129.2 14.3 180 290-479 195-397 (733)
113 TIGR00348 hsdR type I site-spe 99.1 1.5E-09 3.2E-14 123.4 15.5 151 291-463 239-403 (667)
114 smart00489 DEXDc3 DEAD-like he 99.0 4.9E-09 1.1E-13 107.6 14.8 73 290-368 8-84 (289)
115 smart00488 DEXDc2 DEAD-like he 99.0 4.9E-09 1.1E-13 107.6 14.8 73 290-368 8-84 (289)
116 PRK08074 bifunctional ATP-depe 99.0 5.3E-09 1.2E-13 122.9 15.7 133 287-433 255-468 (928)
117 PF07652 Flavi_DEAD: Flaviviru 98.9 1.1E-08 2.3E-13 93.5 10.3 135 304-466 3-140 (148)
118 COG1643 HrpA HrpA-like helicas 98.8 2.1E-07 4.5E-12 106.8 19.4 212 295-537 55-267 (845)
119 PF00176 SNF2_N: SNF2 family N 98.8 6.3E-08 1.4E-12 98.3 13.3 146 304-462 24-172 (299)
120 PRK13103 secA preprotein trans 98.8 5.5E-08 1.2E-12 111.1 12.5 130 286-433 79-215 (913)
121 PRK11747 dinG ATP-dependent DN 98.7 2.1E-07 4.6E-12 106.4 16.3 64 287-362 23-95 (697)
122 COG4096 HsdR Type I site-speci 98.7 7.2E-08 1.6E-12 108.0 10.9 151 289-466 164-324 (875)
123 PLN03142 Probable chromatin-re 98.7 6.1E-07 1.3E-11 105.4 18.2 154 290-462 169-329 (1033)
124 PRK12326 preprotein translocas 98.7 1.3E-07 2.9E-12 105.8 12.1 130 286-433 75-211 (764)
125 PRK12906 secA preprotein trans 98.6 1.4E-07 3E-12 107.4 11.7 129 287-433 78-213 (796)
126 KOG0920 ATP-dependent RNA heli 98.6 9.3E-07 2E-11 101.5 17.8 173 292-483 175-347 (924)
127 PF07517 SecA_DEAD: SecA DEAD- 98.6 4.6E-07 1E-11 91.6 13.2 130 286-433 74-210 (266)
128 KOG0952 DNA/RNA helicase MER3/ 98.6 5E-08 1.1E-12 110.8 4.7 158 289-462 926-1093(1230)
129 PRK04914 ATP-dependent helicas 98.5 8.1E-07 1.7E-11 103.9 14.3 158 290-462 152-315 (956)
130 PRK14873 primosome assembly pr 98.5 2.8E-06 6.1E-11 96.3 17.5 133 314-469 169-310 (665)
131 TIGR02562 cas3_yersinia CRISPR 98.5 9.6E-07 2.1E-11 102.1 12.7 172 290-474 408-646 (1110)
132 COG1199 DinG Rad3-related DNA 98.4 1.1E-06 2.5E-11 99.9 11.5 72 286-368 11-86 (654)
133 CHL00122 secA preprotein trans 98.4 9.5E-07 2.1E-11 100.7 10.4 130 286-433 73-209 (870)
134 PRK15483 type III restriction- 98.4 3.4E-06 7.3E-11 97.7 14.5 144 306-464 60-240 (986)
135 KOG1123 RNA polymerase II tran 98.4 3.1E-07 6.8E-12 97.4 5.5 148 289-463 301-459 (776)
136 PRK12902 secA preprotein trans 98.4 2.9E-06 6.2E-11 96.9 12.7 129 287-433 83-218 (939)
137 KOG0922 DEAH-box RNA helicase 98.3 3.8E-05 8.2E-10 84.8 18.9 207 295-538 56-267 (674)
138 TIGR00604 rad3 DNA repair heli 98.2 8.9E-06 1.9E-10 93.5 13.5 73 287-368 7-83 (705)
139 KOG0385 Chromatin remodeling c 98.2 2.2E-05 4.7E-10 87.4 14.6 154 290-462 167-327 (971)
140 COG4889 Predicted helicase [Ge 98.2 9E-06 1.9E-10 91.3 11.4 148 269-434 141-318 (1518)
141 KOG4150 Predicted ATP-dependen 98.2 1.5E-05 3.2E-10 86.0 12.1 240 283-539 279-535 (1034)
142 KOG0926 DEAH-box RNA helicase 98.1 2.2E-05 4.7E-10 87.7 12.7 149 297-463 263-425 (1172)
143 KOG0925 mRNA splicing factor A 98.1 0.00016 3.5E-09 77.2 17.1 229 267-538 24-262 (699)
144 PF13086 AAA_11: AAA domain; P 98.1 3.8E-05 8.3E-10 74.5 11.9 74 290-367 1-75 (236)
145 PRK12903 secA preprotein trans 97.9 6.3E-05 1.4E-09 86.0 11.9 129 287-433 76-211 (925)
146 PF13604 AAA_30: AAA domain; P 97.9 5.4E-05 1.2E-09 73.4 9.5 124 290-462 1-131 (196)
147 PF02399 Herpes_ori_bp: Origin 97.9 8.1E-05 1.8E-09 84.5 11.9 147 307-476 51-204 (824)
148 KOG0924 mRNA splicing factor A 97.8 0.0007 1.5E-08 74.9 17.5 166 292-484 358-529 (1042)
149 COG0610 Type I site-specific r 97.8 0.00014 3E-09 86.1 13.0 137 306-462 274-413 (962)
150 KOG0389 SNF2 family DNA-depend 97.8 0.00017 3.6E-09 80.9 11.4 168 291-476 400-580 (941)
151 PF13872 AAA_34: P-loop contai 97.7 0.00049 1.1E-08 70.4 13.1 175 270-468 23-226 (303)
152 KOG0391 SNF2 family DNA-depend 97.7 0.001 2.2E-08 77.2 16.3 153 291-462 616-775 (1958)
153 PF02562 PhoH: PhoH-like prote 97.7 0.0002 4.4E-09 69.9 9.4 144 289-461 3-155 (205)
154 KOG0390 DNA repair protein, SN 97.7 0.001 2.3E-08 75.8 16.0 160 290-462 238-414 (776)
155 KOG0923 mRNA splicing factor A 97.6 0.00097 2.1E-08 73.7 14.7 171 291-484 266-439 (902)
156 KOG0387 Transcription-coupled 97.6 0.00091 2E-08 75.2 14.7 163 273-462 196-375 (923)
157 PF09848 DUF2075: Uncharacteri 97.5 0.00042 9.1E-09 73.2 9.2 109 307-448 3-117 (352)
158 PF14617 CMS1: U3-containing 9 97.5 0.00025 5.5E-09 71.2 7.0 88 342-431 123-212 (252)
159 KOG1000 Chromatin remodeling p 97.3 0.0012 2.6E-08 70.9 10.4 151 289-462 197-348 (689)
160 TIGR01448 recD_rel helicase, p 97.3 0.0033 7.1E-08 72.6 14.6 131 289-461 322-452 (720)
161 PRK12900 secA preprotein trans 97.3 0.00049 1.1E-08 79.9 7.3 127 290-433 138-271 (1025)
162 PRK10536 hypothetical protein; 97.3 0.0054 1.2E-07 61.8 13.8 143 287-460 56-211 (262)
163 KOG1002 Nucleotide excision re 97.3 0.0019 4.1E-08 69.3 10.9 126 290-433 184-329 (791)
164 COG3587 Restriction endonuclea 97.2 0.00098 2.1E-08 75.6 9.0 146 306-468 75-248 (985)
165 PRK10875 recD exonuclease V su 97.2 0.0028 6E-08 71.7 12.0 142 292-461 154-301 (615)
166 KOG1803 DNA helicase [Replicat 97.2 0.002 4.4E-08 70.8 10.1 65 290-366 185-250 (649)
167 TIGR01447 recD exodeoxyribonuc 97.2 0.0054 1.2E-07 69.1 13.8 143 292-461 147-295 (586)
168 TIGR00376 DNA helicase, putati 97.1 0.0039 8.4E-08 71.0 12.6 67 289-367 156-223 (637)
169 PRK12901 secA preprotein trans 97.1 0.001 2.2E-08 77.5 7.1 127 290-433 169-303 (1112)
170 PF12340 DUF3638: Protein of u 97.0 0.011 2.5E-07 58.4 13.3 151 269-433 4-185 (229)
171 KOG4439 RNA polymerase II tran 97.0 0.002 4.4E-08 71.6 8.7 139 290-433 325-476 (901)
172 KOG1132 Helicase of the DEAD s 97.0 0.0064 1.4E-07 69.4 12.4 79 290-368 21-133 (945)
173 PRK13889 conjugal transfer rel 97.0 0.011 2.3E-07 70.2 14.7 126 286-461 343-470 (988)
174 KOG1802 RNA helicase nonsense 96.9 0.0067 1.5E-07 67.3 11.0 73 285-368 405-477 (935)
175 PF13245 AAA_19: Part of AAA d 96.9 0.0044 9.5E-08 50.8 7.5 60 298-365 2-62 (76)
176 PF13401 AAA_22: AAA domain; P 96.8 0.0019 4.2E-08 57.2 5.4 20 304-323 3-22 (131)
177 TIGR02768 TraA_Ti Ti-type conj 96.8 0.022 4.8E-07 66.1 15.1 75 275-362 338-413 (744)
178 KOG0392 SNF2 family DNA-depend 96.7 0.012 2.7E-07 69.1 11.6 159 291-462 976-1138(1549)
179 cd00009 AAA The AAA+ (ATPases 96.6 0.028 6.2E-07 49.4 11.2 17 305-321 19-35 (151)
180 PRK06526 transposase; Provisio 96.6 0.007 1.5E-07 61.2 7.9 22 302-323 95-116 (254)
181 COG0556 UvrB Helicase subunit 96.5 0.0033 7.1E-08 68.3 5.2 66 290-370 12-82 (663)
182 PF00580 UvrD-helicase: UvrD/R 96.5 0.006 1.3E-07 62.1 7.1 70 291-370 1-70 (315)
183 PRK08181 transposase; Validate 96.5 0.032 6.9E-07 56.9 12.0 20 303-322 104-123 (269)
184 KOG0989 Replication factor C, 96.4 0.0093 2E-07 61.1 7.6 46 415-462 124-169 (346)
185 PRK12723 flagellar biosynthesi 96.4 0.081 1.8E-06 56.7 14.7 67 403-473 241-309 (388)
186 PRK13826 Dtr system oriT relax 96.3 0.062 1.3E-06 64.4 15.0 138 274-461 366-505 (1102)
187 KOG0386 Chromatin remodeling c 96.3 0.017 3.6E-07 66.9 9.8 169 289-476 393-572 (1157)
188 PRK05642 DNA replication initi 96.3 0.015 3.2E-07 57.9 8.5 45 420-464 97-141 (234)
189 KOG0384 Chromodomain-helicase 96.3 0.014 2.9E-07 68.8 8.9 158 289-468 369-542 (1373)
190 PRK06893 DNA replication initi 96.3 0.015 3.2E-07 57.7 8.2 48 419-466 90-138 (229)
191 KOG0388 SNF2 family DNA-depend 96.1 0.019 4.2E-07 64.1 8.4 151 293-462 570-733 (1185)
192 PRK08727 hypothetical protein; 96.0 0.025 5.4E-07 56.3 8.4 48 419-466 92-140 (233)
193 PRK08084 DNA replication initi 96.0 0.024 5.3E-07 56.4 8.3 43 421-464 98-142 (235)
194 PRK14722 flhF flagellar biosyn 96.0 0.072 1.6E-06 56.8 11.9 63 401-467 200-262 (374)
195 PRK05703 flhF flagellar biosyn 96.0 0.23 4.9E-06 54.0 16.0 69 402-474 285-354 (424)
196 PF03354 Terminase_1: Phage Te 95.9 0.037 8E-07 61.0 10.0 150 293-460 1-161 (477)
197 PF05970 PIF1: PIF1-like helic 95.9 0.034 7.4E-07 59.1 9.4 59 291-361 2-66 (364)
198 PRK04296 thymidine kinase; Pro 95.9 0.019 4.2E-07 55.2 6.7 53 402-462 63-115 (190)
199 PHA02533 17 large terminase pr 95.9 0.071 1.5E-06 59.5 11.9 149 290-462 59-210 (534)
200 PRK06835 DNA replication prote 95.8 0.077 1.7E-06 55.7 11.2 27 304-331 182-208 (329)
201 PRK14974 cell division protein 95.7 0.15 3.3E-06 53.6 12.8 53 420-472 222-274 (336)
202 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.068 1.5E-06 52.1 9.5 19 304-322 37-55 (226)
203 PF00308 Bac_DnaA: Bacterial d 95.6 0.032 6.9E-07 55.0 6.9 48 419-466 96-144 (219)
204 TIGR00362 DnaA chromosomal rep 95.5 0.075 1.6E-06 57.2 10.3 47 420-466 199-246 (405)
205 COG1875 NYN ribonuclease and A 95.5 0.056 1.2E-06 56.7 8.8 143 287-459 225-385 (436)
206 PRK06921 hypothetical protein; 95.5 0.16 3.4E-06 51.7 11.8 26 304-330 116-141 (266)
207 TIGR00631 uvrb excinuclease AB 95.5 0.076 1.6E-06 60.7 10.4 66 290-370 9-79 (655)
208 PRK00149 dnaA chromosomal repl 95.5 0.08 1.7E-06 57.8 10.3 47 420-466 211-258 (450)
209 COG0653 SecA Preprotein transl 95.4 0.04 8.7E-07 63.5 8.0 127 290-433 80-213 (822)
210 PRK14087 dnaA chromosomal repl 95.4 0.098 2.1E-06 57.3 10.7 48 419-466 205-253 (450)
211 PRK14088 dnaA chromosomal repl 95.4 0.11 2.5E-06 56.6 11.1 49 420-468 194-243 (440)
212 PRK11889 flhF flagellar biosyn 95.4 0.3 6.6E-06 52.4 13.7 70 401-471 302-372 (436)
213 smart00382 AAA ATPases associa 95.4 0.032 7E-07 48.4 5.6 17 305-321 2-18 (148)
214 COG0553 HepA Superfamily II DN 95.3 0.071 1.5E-06 62.3 9.9 133 289-433 337-485 (866)
215 PRK08116 hypothetical protein; 95.2 0.31 6.8E-06 49.6 13.1 24 307-331 116-139 (268)
216 KOG1805 DNA replication helica 95.2 0.083 1.8E-06 61.2 9.3 130 288-433 667-809 (1100)
217 PRK07952 DNA replication prote 95.1 0.34 7.4E-06 48.7 12.8 51 418-469 160-212 (244)
218 cd01120 RecA-like_NTPases RecA 95.1 0.11 2.3E-06 47.1 8.4 44 419-463 84-137 (165)
219 PRK08903 DnaA regulatory inact 95.0 0.14 3E-06 50.4 9.4 43 420-464 90-133 (227)
220 PRK07764 DNA polymerase III su 94.9 0.14 3E-06 60.0 10.7 52 419-473 119-170 (824)
221 PRK12402 replication factor C 94.9 0.2 4.3E-06 51.9 10.9 39 419-459 124-162 (337)
222 PRK12422 chromosomal replicati 94.7 0.16 3.5E-06 55.5 9.8 49 419-467 201-250 (445)
223 KOG0953 Mitochondrial RNA heli 94.7 0.036 7.9E-07 60.6 4.6 96 307-433 193-288 (700)
224 COG3421 Uncharacterized protei 94.7 0.035 7.6E-07 61.3 4.4 144 310-465 2-168 (812)
225 PTZ00112 origin recognition co 94.5 0.74 1.6E-05 53.9 14.5 40 420-461 869-909 (1164)
226 PRK05707 DNA polymerase III su 94.3 0.44 9.5E-06 50.0 11.8 40 419-460 105-144 (328)
227 KOG0991 Replication factor C, 94.3 0.13 2.8E-06 51.1 7.1 42 419-462 112-153 (333)
228 PRK11331 5-methylcytosine-spec 94.3 0.22 4.7E-06 54.3 9.5 28 295-322 184-211 (459)
229 KOG1131 RNA polymerase II tran 94.3 0.85 1.8E-05 50.0 13.7 45 287-331 13-61 (755)
230 TIGR02760 TraI_TIGR conjugativ 94.2 0.55 1.2E-05 60.1 14.3 135 290-461 429-566 (1960)
231 cd01124 KaiC KaiC is a circadi 94.2 0.17 3.7E-06 47.6 7.7 49 308-369 2-50 (187)
232 PHA03368 DNA packaging termina 94.2 0.44 9.6E-06 54.0 11.8 139 302-464 251-392 (738)
233 TIGR00596 rad1 DNA repair prot 94.2 0.24 5.3E-06 57.9 10.2 85 395-480 6-96 (814)
234 PHA02544 44 clamp loader, smal 94.1 0.51 1.1E-05 48.6 11.6 53 420-474 100-152 (316)
235 PRK11054 helD DNA helicase IV; 94.1 0.34 7.3E-06 55.8 11.1 71 289-369 195-265 (684)
236 TIGR01075 uvrD DNA helicase II 94.1 0.11 2.3E-06 60.2 7.2 72 289-370 3-74 (715)
237 PF05621 TniB: Bacterial TniB 94.1 0.27 5.9E-06 50.7 9.2 57 306-367 62-118 (302)
238 TIGR02881 spore_V_K stage V sp 94.1 0.45 9.8E-06 48.0 10.9 17 306-322 43-59 (261)
239 COG1484 DnaC DNA replication p 94.0 0.38 8.2E-06 48.6 10.2 50 304-366 104-153 (254)
240 PRK05298 excinuclease ABC subu 94.0 0.14 3E-06 58.7 7.8 66 290-370 12-82 (652)
241 PF00448 SRP54: SRP54-type pro 94.0 0.17 3.6E-06 49.2 7.2 55 419-473 82-136 (196)
242 PRK00411 cdc6 cell division co 93.9 0.57 1.2E-05 49.9 11.9 16 306-321 56-71 (394)
243 COG1474 CDC6 Cdc6-related prot 93.9 0.62 1.3E-05 49.7 11.9 41 420-462 123-164 (366)
244 KOG0738 AAA+-type ATPase [Post 93.9 0.097 2.1E-06 55.4 5.6 64 421-484 305-383 (491)
245 PRK14086 dnaA chromosomal repl 93.9 0.26 5.5E-06 55.7 9.3 48 419-466 376-424 (617)
246 PRK14723 flhF flagellar biosyn 93.8 1.7 3.8E-05 50.4 16.0 66 401-470 248-313 (767)
247 PF13173 AAA_14: AAA domain 93.8 0.56 1.2E-05 41.8 9.8 38 420-461 61-98 (128)
248 PRK06731 flhF flagellar biosyn 93.8 1.3 2.8E-05 45.2 13.5 69 403-472 138-207 (270)
249 PRK14952 DNA polymerase III su 93.8 0.76 1.6E-05 52.0 12.9 52 419-473 117-168 (584)
250 KOG0921 Dosage compensation co 93.5 0.23 5E-06 57.3 8.0 114 299-433 387-506 (1282)
251 PRK09183 transposase/IS protei 93.4 1.1 2.3E-05 45.5 12.2 22 302-323 99-120 (259)
252 PRK14712 conjugal transfer nic 93.4 0.63 1.4E-05 57.9 12.2 65 290-362 835-901 (1623)
253 PRK09112 DNA polymerase III su 93.4 1.4 3.1E-05 46.7 13.5 50 419-471 140-189 (351)
254 TIGR02785 addA_Gpos recombinat 93.4 0.24 5.3E-06 60.8 8.8 122 291-431 2-126 (1232)
255 PRK08769 DNA polymerase III su 93.3 0.56 1.2E-05 49.1 10.2 41 419-461 112-152 (319)
256 PRK12377 putative replication 93.3 0.95 2E-05 45.6 11.5 26 305-331 101-126 (248)
257 TIGR02640 gas_vesic_GvpN gas v 93.3 0.77 1.7E-05 46.4 11.0 27 296-322 12-38 (262)
258 PF13177 DNA_pol3_delta2: DNA 93.3 1.4 3.1E-05 41.2 12.1 41 419-461 101-141 (162)
259 PRK14949 DNA polymerase III su 93.3 0.8 1.7E-05 53.8 12.2 50 419-471 118-167 (944)
260 cd01122 GP4d_helicase GP4d_hel 93.2 0.33 7.1E-06 48.9 8.2 118 302-433 27-153 (271)
261 PF00004 AAA: ATPase family as 93.2 0.3 6.5E-06 42.8 7.0 14 308-321 1-14 (132)
262 PLN03025 replication factor C 93.2 1.2 2.6E-05 46.3 12.6 44 420-466 99-142 (319)
263 PRK07003 DNA polymerase III su 93.2 0.89 1.9E-05 52.5 12.2 45 419-466 118-162 (830)
264 PRK12727 flagellar biosynthesi 93.1 3 6.6E-05 46.5 15.8 63 403-470 415-478 (559)
265 COG1419 FlhF Flagellar GTP-bin 93.1 2.2 4.7E-05 45.8 14.2 132 305-474 203-335 (407)
266 PF05127 Helicase_RecD: Helica 93.0 0.059 1.3E-06 51.5 2.2 124 309-463 1-124 (177)
267 PRK13709 conjugal transfer nic 92.9 1 2.2E-05 56.8 13.0 64 290-361 967-1032(1747)
268 COG1444 Predicted P-loop ATPas 92.8 0.63 1.4E-05 53.6 10.3 149 283-463 207-357 (758)
269 TIGR01547 phage_term_2 phage t 92.7 0.37 8E-06 51.6 8.1 137 307-464 3-142 (396)
270 PHA03333 putative ATPase subun 92.7 3.4 7.4E-05 47.3 15.7 152 290-463 169-333 (752)
271 PRK13894 conjugal transfer ATP 92.7 0.34 7.3E-06 50.7 7.5 65 281-357 125-190 (319)
272 PRK10919 ATP-dependent DNA hel 92.6 0.22 4.8E-06 57.3 6.7 70 290-369 2-71 (672)
273 COG0470 HolB ATPase involved i 92.6 0.57 1.2E-05 48.1 9.1 47 419-468 108-154 (325)
274 PRK14721 flhF flagellar biosyn 92.5 2.1 4.6E-05 46.4 13.4 57 418-474 267-323 (420)
275 PRK04195 replication factor C 92.4 1.4 3E-05 48.7 12.3 42 268-321 11-55 (482)
276 PRK14958 DNA polymerase III su 92.4 0.71 1.5E-05 51.4 10.0 44 419-465 118-161 (509)
277 PF06745 KaiC: KaiC; InterPro 92.4 0.66 1.4E-05 45.5 8.8 133 304-462 18-160 (226)
278 PRK12323 DNA polymerase III su 92.3 1.1 2.4E-05 51.0 11.4 40 419-460 123-162 (700)
279 PRK14964 DNA polymerase III su 92.3 1.3 2.8E-05 49.1 11.7 51 418-471 114-164 (491)
280 PRK08699 DNA polymerase III su 92.3 1.7 3.7E-05 45.6 12.2 40 419-460 112-151 (325)
281 PRK07940 DNA polymerase III su 92.2 1.5 3.2E-05 47.3 11.8 52 419-473 116-167 (394)
282 PRK05563 DNA polymerase III su 92.2 1.5 3.4E-05 49.3 12.5 43 268-325 13-58 (559)
283 CHL00181 cbbX CbbX; Provisiona 92.2 1.4 3E-05 45.4 11.2 19 305-323 59-77 (287)
284 TIGR01074 rep ATP-dependent DN 92.2 0.44 9.5E-06 54.6 8.3 69 291-369 2-70 (664)
285 PRK08691 DNA polymerase III su 92.1 1.1 2.4E-05 51.4 11.1 39 419-459 118-156 (709)
286 PRK06964 DNA polymerase III su 92.1 1.4 3E-05 46.5 11.3 42 418-461 130-171 (342)
287 PRK00771 signal recognition pa 92.1 1.5 3.3E-05 47.8 11.8 51 422-472 177-227 (437)
288 PHA00729 NTP-binding motif con 92.1 1.4 3E-05 43.8 10.5 71 398-472 60-138 (226)
289 PRK09111 DNA polymerase III su 92.1 2 4.3E-05 48.8 13.2 40 418-459 130-169 (598)
290 TIGR03877 thermo_KaiC_1 KaiC d 92.0 0.68 1.5E-05 46.0 8.5 53 304-369 20-72 (237)
291 PRK14951 DNA polymerase III su 92.0 1.8 3.8E-05 49.4 12.7 46 419-467 123-168 (618)
292 PRK07994 DNA polymerase III su 91.9 2.3 5E-05 48.6 13.4 49 419-470 118-166 (647)
293 TIGR03881 KaiC_arch_4 KaiC dom 91.8 1.3 2.8E-05 43.4 10.1 52 304-368 19-70 (229)
294 KOG0742 AAA+-type ATPase [Post 91.7 0.61 1.3E-05 49.8 7.9 16 306-321 385-400 (630)
295 PRK13833 conjugal transfer pro 91.6 0.57 1.2E-05 49.1 7.7 58 291-358 129-187 (323)
296 TIGR03015 pepcterm_ATPase puta 91.6 1.9 4.1E-05 43.1 11.4 32 290-321 23-59 (269)
297 KOG1015 Transcription regulato 91.6 1.3 2.8E-05 51.8 10.7 150 305-467 696-865 (1567)
298 PF05876 Terminase_GpA: Phage 91.5 0.34 7.5E-06 54.5 6.4 126 290-433 16-147 (557)
299 PRK00440 rfc replication facto 91.3 1.6 3.4E-05 44.8 10.6 38 420-459 102-139 (319)
300 PRK14956 DNA polymerase III su 91.2 1.1 2.5E-05 49.3 9.8 51 420-473 121-171 (484)
301 COG0593 DnaA ATPase involved i 91.2 0.58 1.3E-05 50.4 7.4 48 420-467 175-223 (408)
302 PRK06995 flhF flagellar biosyn 91.2 3 6.4E-05 46.1 13.0 22 305-326 256-277 (484)
303 PRK08939 primosomal protein Dn 91.2 3.2 7E-05 43.1 12.7 17 305-321 156-172 (306)
304 PRK07471 DNA polymerase III su 91.1 3.6 7.9E-05 43.8 13.3 41 419-461 140-180 (365)
305 TIGR02760 TraI_TIGR conjugativ 91.1 1.3 2.8E-05 56.8 11.5 66 289-362 1018-1085(1960)
306 PRK06871 DNA polymerase III su 91.1 2 4.4E-05 45.0 11.1 40 419-460 106-145 (325)
307 PRK12726 flagellar biosynthesi 91.0 4.4 9.5E-05 43.5 13.6 19 305-323 206-224 (407)
308 PRK07993 DNA polymerase III su 91.0 1.3 2.9E-05 46.6 9.8 41 418-460 106-146 (334)
309 PF07728 AAA_5: AAA domain (dy 91.0 0.092 2E-06 47.2 1.0 15 307-321 1-15 (139)
310 PRK06645 DNA polymerase III su 91.0 3.7 8.1E-05 45.7 13.7 42 268-324 18-62 (507)
311 PRK14961 DNA polymerase III su 90.9 2.7 5.9E-05 44.6 12.2 46 419-467 118-163 (363)
312 TIGR01650 PD_CobS cobaltochela 90.9 1.2 2.5E-05 46.8 9.0 21 301-321 60-80 (327)
313 PRK14965 DNA polymerase III su 90.9 2.9 6.3E-05 47.3 13.0 51 418-471 117-167 (576)
314 TIGR02928 orc1/cdc6 family rep 90.8 1.2 2.6E-05 46.8 9.3 24 306-330 41-64 (365)
315 PRK14960 DNA polymerase III su 90.7 1.5 3.3E-05 50.1 10.3 45 419-466 117-161 (702)
316 PF05729 NACHT: NACHT domain 90.7 1.9 4.2E-05 39.1 9.5 41 423-463 84-131 (166)
317 PRK11773 uvrD DNA-dependent he 90.7 0.47 1E-05 55.1 6.6 72 289-370 8-79 (721)
318 PRK12724 flagellar biosynthesi 90.6 4.8 0.0001 43.7 13.6 56 419-474 298-356 (432)
319 TIGR02782 TrbB_P P-type conjug 90.6 0.89 1.9E-05 47.1 7.9 65 281-357 109-174 (299)
320 PRK11823 DNA repair protein Ra 90.2 1.2 2.5E-05 48.9 8.8 53 304-369 79-131 (446)
321 PF03237 Terminase_6: Terminas 90.2 4.6 0.0001 41.6 13.0 146 309-477 1-154 (384)
322 COG4962 CpaF Flp pilus assembl 90.1 0.91 2E-05 47.6 7.4 81 262-360 134-215 (355)
323 PRK14959 DNA polymerase III su 89.8 4.2 9E-05 46.3 12.9 50 419-471 118-167 (624)
324 KOG0739 AAA+-type ATPase [Post 89.7 2.7 5.8E-05 43.5 10.1 132 299-486 155-302 (439)
325 TIGR02880 cbbX_cfxQ probable R 89.6 3.8 8.3E-05 42.0 11.6 18 305-322 58-75 (284)
326 TIGR00678 holB DNA polymerase 89.5 5.2 0.00011 37.9 11.8 40 418-459 94-133 (188)
327 PRK05896 DNA polymerase III su 89.3 2.8 6.1E-05 47.5 11.0 50 419-471 118-167 (605)
328 PRK14969 DNA polymerase III su 89.3 3.2 6.9E-05 46.5 11.5 39 419-459 118-156 (527)
329 PRK14957 DNA polymerase III su 89.2 4.2 9E-05 45.7 12.3 39 419-459 118-156 (546)
330 TIGR03499 FlhF flagellar biosy 89.2 2.3 5E-05 43.6 9.6 19 305-323 194-212 (282)
331 PRK06090 DNA polymerase III su 89.2 4.6 0.0001 42.3 11.9 42 418-461 106-147 (319)
332 KOG0298 DEAD box-containing he 89.2 0.9 1.9E-05 54.4 7.2 150 305-462 374-550 (1394)
333 PRK14948 DNA polymerase III su 88.9 6.4 0.00014 45.0 13.8 46 419-467 120-165 (620)
334 TIGR01073 pcrA ATP-dependent D 88.9 0.76 1.7E-05 53.4 6.5 72 289-370 3-74 (726)
335 TIGR00064 ftsY signal recognit 88.6 6.7 0.00014 40.0 12.4 54 419-472 153-212 (272)
336 PRK08533 flagellar accessory p 88.5 4.3 9.2E-05 40.3 10.7 54 303-369 22-75 (230)
337 PHA00012 I assembly protein 88.5 4.9 0.00011 42.2 11.2 24 308-331 4-27 (361)
338 TIGR03689 pup_AAA proteasome A 88.5 1.7 3.7E-05 48.3 8.5 17 305-321 216-232 (512)
339 cd00984 DnaB_C DnaB helicase C 88.4 3.7 8E-05 40.4 10.2 39 303-352 11-49 (242)
340 PRK07133 DNA polymerase III su 88.4 2.5 5.5E-05 48.8 10.0 47 419-468 117-163 (725)
341 cd01126 TraG_VirD4 The TraG/Tr 88.3 0.27 5.9E-06 52.5 2.1 48 307-368 1-48 (384)
342 PRK05973 replicative DNA helic 88.2 2.6 5.7E-05 42.2 9.0 66 290-369 50-115 (237)
343 PRK13851 type IV secretion sys 88.2 0.66 1.4E-05 49.0 4.9 46 300-358 157-202 (344)
344 TIGR02525 plasmid_TraJ plasmid 88.0 1.1 2.5E-05 47.8 6.6 45 268-331 130-174 (372)
345 PF07724 AAA_2: AAA domain (Cd 88.0 0.58 1.3E-05 44.4 3.9 14 307-320 5-18 (171)
346 PF02534 T4SS-DNA_transf: Type 87.9 0.45 9.8E-06 52.0 3.6 50 306-369 45-94 (469)
347 TIGR00580 mfd transcription-re 87.7 2.2 4.7E-05 50.9 9.3 80 344-432 659-742 (926)
348 PRK13900 type IV secretion sys 87.7 1.5 3.3E-05 46.1 7.2 44 301-357 156-199 (332)
349 PRK06067 flagellar accessory p 87.7 3.8 8.2E-05 40.4 9.8 53 304-369 24-76 (234)
350 PRK10689 transcription-repair 87.6 2.3 5E-05 51.9 9.6 79 345-432 809-891 (1147)
351 PRK14955 DNA polymerase III su 87.6 5.4 0.00012 42.9 11.5 47 418-467 125-171 (397)
352 PRK14950 DNA polymerase III su 87.5 4.6 0.0001 45.8 11.5 43 268-325 13-58 (585)
353 PF01695 IstB_IS21: IstB-like 87.5 1 2.2E-05 42.9 5.4 46 303-361 45-90 (178)
354 cd01121 Sms Sms (bacterial rad 87.5 2.3 5E-05 45.4 8.6 91 304-433 81-171 (372)
355 TIGR00635 ruvB Holliday juncti 87.4 1.3 2.9E-05 45.3 6.5 16 306-321 31-46 (305)
356 PRK13342 recombination factor 87.2 3.2 6.9E-05 44.9 9.6 17 306-322 37-53 (413)
357 TIGR01243 CDC48 AAA family ATP 87.0 2.4 5.2E-05 49.4 9.0 52 267-321 174-228 (733)
358 KOG0732 AAA+-type ATPase conta 87.0 1 2.2E-05 53.5 5.9 141 267-462 261-414 (1080)
359 KOG1133 Helicase of the DEAD s 86.9 1 2.2E-05 50.9 5.5 44 290-333 15-62 (821)
360 COG2805 PilT Tfp pilus assembl 86.8 0.8 1.7E-05 47.3 4.3 48 267-333 105-152 (353)
361 TIGR03878 thermo_KaiC_2 KaiC d 86.8 4.6 9.9E-05 40.8 9.9 38 304-353 35-72 (259)
362 cd03239 ABC_SMC_head The struc 86.8 1.5 3.2E-05 41.8 6.0 42 419-461 115-157 (178)
363 cd03115 SRP The signal recogni 86.8 13 0.00029 34.5 12.5 55 419-473 81-135 (173)
364 PHA03372 DNA packaging termina 86.6 7.9 0.00017 43.8 12.1 131 303-463 200-338 (668)
365 PF01637 Arch_ATPase: Archaeal 86.5 1.9 4E-05 41.5 6.7 56 403-462 105-165 (234)
366 KOG1016 Predicted DNA helicase 86.5 9.6 0.00021 44.0 12.7 183 273-469 245-480 (1387)
367 PRK04328 hypothetical protein; 86.5 6.1 0.00013 39.6 10.6 53 304-369 22-74 (249)
368 PRK14954 DNA polymerase III su 86.5 4.1 9E-05 46.5 10.3 40 418-459 125-164 (620)
369 KOG1001 Helicase-like transcri 86.4 2.8 6.1E-05 48.2 8.9 112 307-433 154-267 (674)
370 PF03969 AFG1_ATPase: AFG1-lik 86.3 5.4 0.00012 42.5 10.5 111 305-467 62-173 (362)
371 TIGR00763 lon ATP-dependent pr 86.1 2.8 6.1E-05 49.2 9.0 18 304-321 346-363 (775)
372 PF13191 AAA_16: AAA ATPase do 86.1 2.4 5.3E-05 39.3 7.1 27 305-332 24-50 (185)
373 COG3973 Superfamily I DNA and 86.0 3.7 8E-05 46.1 9.2 94 272-371 186-286 (747)
374 TIGR00959 ffh signal recogniti 86.0 11 0.00023 41.3 12.7 18 307-324 101-118 (428)
375 KOG0744 AAA+-type ATPase [Post 85.9 3.1 6.8E-05 43.4 8.0 109 305-432 177-321 (423)
376 PRK13897 type IV secretion sys 85.6 0.7 1.5E-05 52.4 3.6 49 306-368 159-207 (606)
377 PRK06904 replicative DNA helic 85.5 7.7 0.00017 42.9 11.5 143 304-460 220-382 (472)
378 KOG2228 Origin recognition com 85.4 26 0.00055 37.1 14.4 76 405-481 122-202 (408)
379 KOG1513 Nuclear helicase MOP-3 85.4 1.2 2.6E-05 51.0 5.2 152 290-462 264-454 (1300)
380 TIGR03600 phage_DnaB phage rep 85.4 6.5 0.00014 42.5 10.8 25 304-329 193-217 (421)
381 PRK14963 DNA polymerase III su 85.4 6.6 0.00014 43.8 11.0 41 268-323 11-54 (504)
382 cd00561 CobA_CobO_BtuR ATP:cor 85.3 12 0.00025 35.3 11.1 52 417-469 92-145 (159)
383 PRK14970 DNA polymerase III su 85.3 9.2 0.0002 40.4 11.8 40 268-322 14-56 (367)
384 TIGR02655 circ_KaiC circadian 85.3 5.2 0.00011 44.2 10.2 53 304-369 262-314 (484)
385 TIGR00665 DnaB replicative DNA 85.2 5.4 0.00012 43.3 10.1 141 304-460 194-353 (434)
386 TIGR00602 rad24 checkpoint pro 85.0 6.1 0.00013 45.2 10.7 48 268-323 81-128 (637)
387 TIGR00708 cobA cob(I)alamin ad 84.9 13 0.00029 35.4 11.3 51 418-469 95-147 (173)
388 PRK13341 recombination factor 84.9 2.1 4.7E-05 49.6 7.1 39 420-464 109-147 (725)
389 PRK14962 DNA polymerase III su 84.9 3.8 8.2E-05 45.3 8.8 41 268-323 11-54 (472)
390 COG4626 Phage terminase-like p 84.9 5.6 0.00012 44.3 9.9 148 290-460 61-223 (546)
391 PRK05748 replicative DNA helic 84.8 5.7 0.00012 43.4 10.1 143 304-464 202-366 (448)
392 PRK00080 ruvB Holliday junctio 84.6 5.4 0.00012 41.6 9.5 43 268-322 22-68 (328)
393 TIGR03880 KaiC_arch_3 KaiC dom 84.6 4.3 9.3E-05 39.7 8.3 53 304-369 15-67 (224)
394 PRK05986 cob(I)alamin adenolsy 84.6 11 0.00024 36.6 10.7 51 418-469 113-165 (191)
395 TIGR01425 SRP54_euk signal rec 84.1 35 0.00076 37.3 15.6 16 307-322 102-117 (429)
396 TIGR00631 uvrb excinuclease AB 83.9 26 0.00056 40.4 15.2 118 344-472 441-563 (655)
397 TIGR00767 rho transcription te 83.7 3.2 7E-05 44.8 7.3 20 302-321 165-184 (415)
398 PF05496 RuvB_N: Holliday junc 83.7 3.1 6.8E-05 41.4 6.7 14 307-320 52-65 (233)
399 PRK13764 ATPase; Provisional 83.6 2 4.4E-05 48.6 6.1 45 268-331 238-282 (602)
400 COG2909 MalT ATP-dependent tra 83.6 3.5 7.5E-05 48.0 7.9 41 422-463 131-171 (894)
401 TIGR02237 recomb_radB DNA repa 83.6 5.9 0.00013 38.1 8.7 39 304-354 11-49 (209)
402 PRK06305 DNA polymerase III su 83.5 12 0.00026 41.1 11.9 39 419-459 120-158 (451)
403 PRK07004 replicative DNA helic 83.5 5.7 0.00012 43.7 9.4 140 304-460 212-372 (460)
404 COG1435 Tdk Thymidine kinase [ 83.4 6.5 0.00014 38.2 8.5 106 306-450 5-110 (201)
405 TIGR02397 dnaX_nterm DNA polym 83.3 26 0.00056 36.5 14.0 51 418-471 115-165 (355)
406 TIGR02524 dot_icm_DotB Dot/Icm 83.1 1.5 3.3E-05 46.6 4.6 26 304-330 133-158 (358)
407 PRK04537 ATP-dependent RNA hel 83.1 8.1 0.00017 43.7 10.6 75 344-429 256-334 (572)
408 PF05707 Zot: Zonular occluden 83.0 1.3 2.7E-05 42.7 3.7 54 420-474 79-137 (193)
409 PRK13850 type IV secretion sys 82.9 0.99 2.2E-05 51.8 3.4 49 306-368 140-188 (670)
410 PRK08451 DNA polymerase III su 82.9 5.5 0.00012 44.7 9.0 47 418-467 115-161 (535)
411 cd01130 VirB11-like_ATPase Typ 82.9 1.7 3.7E-05 41.4 4.5 32 290-321 9-41 (186)
412 TIGR00416 sms DNA repair prote 82.6 6.2 0.00013 43.3 9.2 91 304-433 93-183 (454)
413 PRK08058 DNA polymerase III su 82.5 12 0.00026 39.2 11.0 50 418-470 108-157 (329)
414 PRK06647 DNA polymerase III su 82.4 8.2 0.00018 43.6 10.3 51 418-471 117-167 (563)
415 PF12846 AAA_10: AAA-like doma 82.3 1.9 4E-05 43.4 4.8 42 305-358 1-42 (304)
416 PRK11034 clpA ATP-dependent Cl 82.2 4.7 0.0001 47.1 8.5 18 305-322 207-224 (758)
417 COG2804 PulE Type II secretory 82.2 2 4.4E-05 47.2 5.2 40 292-332 243-284 (500)
418 TIGR01243 CDC48 AAA family ATP 82.1 3.7 7.9E-05 47.9 7.7 51 268-321 450-503 (733)
419 KOG0741 AAA+-type ATPase [Post 82.1 2.6 5.7E-05 46.6 5.9 53 266-321 214-272 (744)
420 PF02572 CobA_CobO_BtuR: ATP:c 81.5 21 0.00046 33.9 11.3 53 416-469 92-146 (172)
421 PRK10436 hypothetical protein; 81.2 2.1 4.5E-05 47.1 4.9 48 268-330 195-242 (462)
422 PF06733 DEAD_2: DEAD_2; Inte 81.1 1.3 2.8E-05 41.8 2.9 46 388-433 111-158 (174)
423 CHL00095 clpC Clp protease ATP 81.0 4.5 9.9E-05 47.8 8.0 36 406-448 602-637 (821)
424 PF14516 AAA_35: AAA-like doma 80.6 7.8 0.00017 40.6 8.8 39 293-332 18-57 (331)
425 PRK10867 signal recognition pa 80.5 25 0.00054 38.5 12.9 17 307-323 102-118 (433)
426 COG1197 Mfd Transcription-repa 80.4 17 0.00036 44.0 12.1 82 343-433 801-886 (1139)
427 COG0630 VirB11 Type IV secreto 80.4 5.4 0.00012 41.6 7.4 74 266-357 108-182 (312)
428 PRK14953 DNA polymerase III su 80.3 17 0.00038 40.3 11.8 46 418-466 117-162 (486)
429 PRK10416 signal recognition pa 80.2 56 0.0012 34.2 15.0 55 419-473 195-255 (318)
430 TIGR01420 pilT_fam pilus retra 80.2 4.4 9.5E-05 42.7 6.9 43 304-357 121-163 (343)
431 TIGR03345 VI_ClpV1 type VI sec 80.0 4.8 0.0001 47.7 7.7 16 306-321 209-224 (852)
432 PRK08760 replicative DNA helic 79.8 8.7 0.00019 42.5 9.2 113 305-433 229-352 (476)
433 TIGR02012 tigrfam_recA protein 79.6 8.1 0.00018 40.5 8.5 42 304-357 54-95 (321)
434 PF00437 T2SE: Type II/IV secr 79.6 1.7 3.8E-05 43.7 3.5 44 302-357 124-167 (270)
435 TIGR02538 type_IV_pilB type IV 79.5 2.3 5.1E-05 47.9 4.8 25 305-330 316-340 (564)
436 TIGR02868 CydC thiol reductant 79.5 2.7 5.9E-05 46.7 5.3 41 418-459 486-526 (529)
437 KOG0737 AAA+-type ATPase [Post 79.4 7.9 0.00017 41.1 8.2 62 422-483 188-261 (386)
438 cd01125 repA Hexameric Replica 79.2 14 0.00031 36.5 9.8 59 308-366 4-65 (239)
439 COG2256 MGS1 ATPase related to 79.1 6.9 0.00015 42.0 7.7 17 306-322 49-65 (436)
440 PRK04837 ATP-dependent RNA hel 78.9 12 0.00026 40.4 9.9 73 345-428 255-331 (423)
441 PRK13876 conjugal transfer cou 78.6 1.8 3.9E-05 49.7 3.5 50 305-368 144-193 (663)
442 COG2255 RuvB Holliday junction 78.0 14 0.0003 38.2 9.1 39 404-448 91-129 (332)
443 TIGR03345 VI_ClpV1 type VI sec 77.8 9.8 0.00021 45.2 9.4 54 405-465 658-721 (852)
444 PRK07399 DNA polymerase III su 77.6 14 0.0003 38.5 9.6 49 419-471 123-171 (314)
445 KOG2543 Origin recognition com 77.6 26 0.00056 37.6 11.3 47 419-466 114-162 (438)
446 cd01394 radB RadB. The archaea 77.5 17 0.00037 35.1 9.7 20 305-324 19-38 (218)
447 TIGR03819 heli_sec_ATPase heli 77.5 5.2 0.00011 42.3 6.3 63 280-357 154-217 (340)
448 PRK10865 protein disaggregatio 77.4 6 0.00013 47.0 7.5 17 306-322 200-216 (857)
449 CHL00176 ftsH cell division pr 77.4 12 0.00025 43.1 9.5 51 268-321 180-232 (638)
450 PRK13880 conjugal transfer cou 77.3 2.4 5.3E-05 48.5 4.1 48 306-367 176-223 (636)
451 COG1132 MdlB ABC-type multidru 77.2 6.2 0.00013 44.3 7.3 44 418-462 481-524 (567)
452 COG1219 ClpX ATP-dependent pro 77.2 1.3 2.9E-05 46.0 1.8 17 306-322 98-114 (408)
453 PRK11192 ATP-dependent RNA hel 77.1 14 0.00031 39.9 9.8 71 345-426 245-319 (434)
454 COG0542 clpA ATP-binding subun 77.0 5.4 0.00012 46.4 6.7 15 307-321 523-537 (786)
455 TIGR02639 ClpA ATP-dependent C 76.9 17 0.00037 42.4 10.9 17 306-322 204-220 (731)
456 TIGR03346 chaperone_ClpB ATP-d 76.8 19 0.00042 42.8 11.5 17 306-322 195-211 (852)
457 PRK13822 conjugal transfer cou 76.8 2.8 6E-05 48.0 4.4 50 305-368 224-273 (641)
458 TIGR02639 ClpA ATP-dependent C 76.7 5 0.00011 46.8 6.5 25 421-447 554-578 (731)
459 PRK09376 rho transcription ter 76.7 9.8 0.00021 41.1 8.1 29 292-320 153-184 (416)
460 PRK09087 hypothetical protein; 76.5 10 0.00022 37.5 7.9 17 305-321 44-60 (226)
461 PHA02535 P terminase ATPase su 76.4 12 0.00026 42.2 9.0 85 275-370 123-207 (581)
462 cd01127 TrwB Bacterial conjuga 76.4 2.2 4.7E-05 46.2 3.2 32 299-331 36-67 (410)
463 PTZ00293 thymidine kinase; Pro 76.4 13 0.00028 36.6 8.3 39 305-355 4-42 (211)
464 PRK04841 transcriptional regul 76.1 23 0.0005 41.8 12.0 41 422-463 123-163 (903)
465 PRK06321 replicative DNA helic 76.1 19 0.00041 39.8 10.5 138 306-460 227-387 (472)
466 KOG0344 ATP-dependent RNA heli 76.1 51 0.0011 37.1 13.5 98 314-431 366-467 (593)
467 PRK14971 DNA polymerase III su 75.8 18 0.0004 41.3 10.6 50 418-470 119-168 (614)
468 PRK10590 ATP-dependent RNA hel 75.7 18 0.00038 39.6 10.1 71 345-426 245-319 (456)
469 KOG0734 AAA+-type ATPase conta 75.6 14 0.00029 41.3 8.9 60 405-466 383-452 (752)
470 PRK08506 replicative DNA helic 75.3 12 0.00026 41.4 8.7 141 304-460 191-350 (472)
471 PF10412 TrwB_AAD_bind: Type I 75.3 2.7 5.8E-05 45.1 3.6 48 302-361 12-59 (386)
472 PF03796 DnaB_C: DnaB-like hel 75.0 5.8 0.00013 39.7 5.8 112 305-434 19-144 (259)
473 TIGR02767 TraG-Ti Ti-type conj 74.5 2.5 5.5E-05 48.1 3.3 49 306-368 212-260 (623)
474 PRK05564 DNA polymerase III su 74.2 12 0.00027 38.6 8.1 46 418-466 91-136 (313)
475 cd01129 PulE-GspE PulE/GspE Th 74.2 4.5 9.8E-05 41.0 4.7 35 295-330 68-104 (264)
476 PRK08840 replicative DNA helic 74.1 31 0.00068 38.0 11.5 41 420-460 329-377 (464)
477 KOG0058 Peptide exporter, ABC 74.0 4.6 9.9E-05 46.2 5.0 41 418-460 620-660 (716)
478 TIGR03743 SXT_TraD conjugative 73.6 6.2 0.00014 45.2 6.1 54 305-370 176-231 (634)
479 PRK12906 secA preprotein trans 73.5 12 0.00025 43.9 8.2 26 514-539 423-450 (796)
480 TIGR02788 VirB11 P-type DNA tr 73.4 4.8 0.0001 41.7 4.8 21 301-321 140-160 (308)
481 PTZ00110 helicase; Provisional 73.4 14 0.0003 41.5 8.8 72 344-426 376-451 (545)
482 PRK09361 radB DNA repair and r 73.3 13 0.00028 36.3 7.6 22 305-326 23-44 (225)
483 TIGR02533 type_II_gspE general 73.0 4.7 0.0001 44.7 4.8 23 307-330 244-266 (486)
484 COG2109 BtuR ATP:corrinoid ade 73.0 22 0.00048 34.5 8.6 50 419-469 121-172 (198)
485 PRK07773 replicative DNA helic 72.9 16 0.00035 43.6 9.5 113 305-433 217-340 (886)
486 COG0552 FtsY Signal recognitio 72.7 64 0.0014 34.0 12.6 125 307-468 141-275 (340)
487 PF01443 Viral_helicase1: Vira 72.6 3.3 7.2E-05 40.3 3.2 14 308-321 1-14 (234)
488 PRK10263 DNA translocase FtsK; 72.5 13 0.00029 45.5 8.6 26 306-331 1011-1036(1355)
489 KOG3089 Predicted DEAD-box-con 72.4 4 8.6E-05 40.2 3.5 35 395-429 195-229 (271)
490 PRK12900 secA preprotein trans 72.3 12 0.00027 44.6 8.1 27 514-540 581-609 (1025)
491 TIGR03754 conj_TOL_TraD conjug 72.2 7.6 0.00016 44.4 6.3 54 305-370 180-235 (643)
492 KOG0331 ATP-dependent RNA heli 71.9 12 0.00026 41.6 7.5 73 343-426 339-415 (519)
493 PHA00350 putative assembly pro 71.6 34 0.00074 37.0 10.7 52 420-472 81-154 (399)
494 KOG1514 Origin recognition com 71.4 28 0.00061 40.0 10.3 41 420-462 508-551 (767)
495 PRK08006 replicative DNA helic 71.2 39 0.00084 37.4 11.4 141 305-460 224-384 (471)
496 PRK11776 ATP-dependent RNA hel 71.2 24 0.00053 38.4 9.9 74 345-429 242-319 (460)
497 TIGR00643 recG ATP-dependent D 71.2 30 0.00065 39.7 10.9 80 344-432 447-538 (630)
498 PRK09354 recA recombinase A; P 70.6 24 0.00051 37.5 9.2 43 304-358 59-101 (349)
499 KOG0741 AAA+-type ATPase [Post 70.6 40 0.00086 37.8 10.9 49 273-321 494-554 (744)
500 COG0556 UvrB Helicase subunit 70.5 61 0.0013 36.3 12.3 114 344-472 445-567 (663)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.4e-47 Score=383.39 Aligned_cols=251 Identities=30% Similarity=0.437 Sum_probs=237.1
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
+..+|.+||+.+++++++...||..||+||+++||.++.|+|+|+.|+||||||.||+|||+++|+.+ ...
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------p~~ 129 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE---------PKL 129 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC---------CCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999875 235
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHH-hccccCCCccEE
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK-EGILQLINLRCA 424 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~-~~~~~l~~i~~L 424 (540)
++++||+||||||.||..++..|+. +.++++.++.||..+..|...+.+.+||||||||+|++++. .+.+.+..++||
T Consensus 130 ~~~lVLtPtRELA~QI~e~fe~Lg~-~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 130 FFALVLTPTRELAQQIAEQFEALGS-GIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred ceEEEecCcHHHHHHHHHHHHHhcc-ccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 8999999999999999999999987 48999999999999999999999999999999999999998 578899999999
Q ss_pred EEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCC
Q 009212 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 425 VlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~ 504 (540)
|+||||+++ |+.|.+.+..|++.+|.++|+++||||+|..+.++....+.++..+..+..+.+...+.|.|+.++.
T Consensus 209 VlDEADrlL-d~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~--- 284 (476)
T KOG0330|consen 209 VLDEADRLL-DMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG--- 284 (476)
T ss_pred hhchHHhhh-hhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc---
Confidence 999999999 8999999999999999999999999999999999888889999999999899999999999999987
Q ss_pred CCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|+.+++......+||||||.
T Consensus 285 ---------k~K~~yLV~ll~e~~g~s~iVF~~t~ 310 (476)
T KOG0330|consen 285 ---------KDKDTYLVYLLNELAGNSVIVFCNTC 310 (476)
T ss_pred ---------cccchhHHHHHHhhcCCcEEEEEecc
Confidence 46889999999998889999999986
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-46 Score=398.89 Aligned_cols=256 Identities=35% Similarity=0.547 Sum_probs=227.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
...|.+++|+++++..|+..||.+|||||.++||+++.|+|++++|.|||||||+|++|+++++.... .......+|
T Consensus 90 ~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~---~~~~~~~~P 166 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ---GKLSRGDGP 166 (519)
T ss_pred chhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc---ccccCCCCC
Confidence 34899999999999999999999999999999999999999999999999999999999999998631 123556799
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||||||.|+..++.+++.. ..+++.|++||.+...|.+.+.++++|+||||+||.++++.+.+.|++|.|||+
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~~~~-~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVL 245 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREFGKS-LRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVL 245 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHHcCC-CCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEe
Confidence 9999999999999999999999874 568899999999999999999999999999999999999999999999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCC--ccccCCCceeEEEEcCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG--MHRISPGLEEFLVDCSGDQ 503 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~--~~~~~~~I~q~~v~~~~~~ 503 (540)
||||+|+ |++|+++++.|+..+ +..+|++++|||||.++..+...++.++..+.... ......+|.|++..|..
T Consensus 246 DEADrMl-dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~-- 322 (519)
T KOG0331|consen 246 DEADRML-DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDE-- 322 (519)
T ss_pred ccHHhhh-ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCH--
Confidence 9999999 999999999999999 55669999999999999999999998876554432 44677889999888874
Q ss_pred CCCCchhhHhhhHHHHHHHHHHhC---CCCcEEEEeccc
Q 009212 504 ESDKTPETAFLNKKSALLQLIEKS---PVSKTIVFCNKK 539 (540)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~ll~~~---~~~rtIIFcnSr 539 (540)
..|...|..+|+.. ...++||||+|+
T Consensus 323 ----------~~K~~~l~~lL~~~~~~~~~KvIIFc~tk 351 (519)
T KOG0331|consen 323 ----------TAKLRKLGKLLEDISSDSEGKVIIFCETK 351 (519)
T ss_pred ----------HHHHHHHHHHHHHHhccCCCcEEEEecch
Confidence 34566666666553 567999999996
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-43 Score=387.51 Aligned_cols=253 Identities=32% Similarity=0.496 Sum_probs=228.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
..|++++|++.++++|.++||..|||||.++||.++.|+|+++.|+||||||+||++|+++.+.... .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~------~~~~~~- 101 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV------ERKYVS- 101 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc------ccCCCc-
Confidence 5799999999999999999999999999999999999999999999999999999999999976320 011112
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+|||+||||||.|+++.++.++.+...+++.+++||.....|...+..++||||+||+||++++.++.+.+..+++||+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 99999999999999999999998522789999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCcc--ccCCCceeEEEEcCCCCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH--RISPGLEEFLVDCSGDQES 505 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~--~~~~~I~q~~v~~~~~~~~ 505 (540)
|||+|+ +++|.+.+..|+..+|..+|+++||||+|..+..+...++.++..+...... .+...|.|+++.+...
T Consensus 182 EADrmL-d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~--- 257 (513)
T COG0513 182 EADRML-DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESE--- 257 (513)
T ss_pred cHhhhh-cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCH---
Confidence 999999 8999999999999999999999999999999999999999988766554333 3788899999999863
Q ss_pred CCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 506 ~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++......++||||+|+
T Consensus 258 --------~~k~~~L~~ll~~~~~~~~IVF~~tk 283 (513)
T COG0513 258 --------EEKLELLLKLLKDEDEGRVIVFVRTK 283 (513)
T ss_pred --------HHHHHHHHHHHhcCCCCeEEEEeCcH
Confidence 24999999999998878999999986
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-44 Score=369.36 Aligned_cols=255 Identities=26% Similarity=0.414 Sum_probs=230.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|.+|+|+..+++++..+||..|||||..+||..+.|+|++.||-||||||.||.+|+|.+|+-.+ ......+
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrP------k~~~~TR 254 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRP------KKVAATR 254 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCc------ccCccee
Confidence 5899999999999999999999999999999999999999999999999999999999999998643 2245668
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-cccCCCccEEEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAIL 426 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~LVl 426 (540)
+|||||||||+.|++.+.++|+.+ ..+.++++.||.+.+.|-..|+..+||+|+|||||.+++++. .+.+++|.+||+
T Consensus 255 VLVL~PTRELaiQv~sV~~qlaqF-t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVHSVTKQLAQF-TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhh-ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEe
Confidence 999999999999999999999997 679999999999999999999999999999999999999874 678999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||+|+ +.+|...|..|++.+++.+|+++||||++.+|..++.-.+.+|+.++.+........+.|.|+.+.....
T Consensus 334 DEADRML-eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re-- 410 (691)
T KOG0338|consen 334 DEADRML-EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKRE-- 410 (691)
T ss_pred chHHHHH-HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccc--
Confidence 9999999 7899999999999999999999999999999999999999999999888888888899999998764221
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..+...|..++...-..++|||+.|+
T Consensus 411 -------~dRea~l~~l~~rtf~~~~ivFv~tK 436 (691)
T KOG0338|consen 411 -------GDREAMLASLITRTFQDRTIVFVRTK 436 (691)
T ss_pred -------cccHHHHHHHHHHhcccceEEEEehH
Confidence 23455666666655557899999885
No 5
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-42 Score=338.42 Aligned_cols=255 Identities=26% Similarity=0.429 Sum_probs=237.6
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCC
Q 009212 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (540)
Q Consensus 264 ~~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~ 343 (540)
+....+|+++||.++++++++..||++|+.||+.||++++.|+|++++|++|+|||.+|.+.+++.+... .
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~---------~ 93 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS---------V 93 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc---------c
Confidence 3445799999999999999999999999999999999999999999999999999999999999877532 3
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
...++|||.||||||.|+.+.+..++.+ .++.+..+.||.+..+.++.+..|++++.+|||+++++++++.+....+++
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~-mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkm 172 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDY-MNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKM 172 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhccc-ccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeE
Confidence 3467999999999999999999999986 789999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCC
Q 009212 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (540)
Q Consensus 424 LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~ 503 (540)
||+||||.|+ +.+|..++-.|.+.+|+..|++++|||+|.++.+...++++++..+.....+.+...|+|+|+.+..+
T Consensus 173 lVLDEaDemL-~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~E- 250 (400)
T KOG0328|consen 173 LVLDEADEML-NKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKE- 250 (400)
T ss_pred EEeccHHHHH-HhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechh-
Confidence 9999999999 78999999999999999999999999999999999999999999888877777888899999998875
Q ss_pred CCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..|.+.|..++......+++|||||+.
T Consensus 251 ----------ewKfdtLcdLYd~LtItQavIFcnTk~ 277 (400)
T KOG0328|consen 251 ----------EWKFDTLCDLYDTLTITQAVIFCNTKR 277 (400)
T ss_pred ----------hhhHhHHHHHhhhhehheEEEEecccc
Confidence 469999999999999999999999973
No 6
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.6e-42 Score=357.73 Aligned_cols=295 Identities=26% Similarity=0.378 Sum_probs=262.0
Q ss_pred ccccccCCCCCccCCCCCcCCCcccccccCCCCCCccCcccCCCCCccccccccccCCCHHHHHHHHHCCCCCCcHHHHH
Q 009212 218 NSRSNKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAM 297 (540)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~ 297 (540)
..|+.+....++ ++.|+-....-.+++.+..+|.+ ..+|++.+|+.++++.+...||..|||||.+
T Consensus 209 rhW~~k~l~Em~--~rdwri~redynis~kg~~lpnp------------lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~ 274 (673)
T KOG0333|consen 209 RHWSEKVLAEMT--ERDWRIFREDYNISIKGGRLPNP------------LRNWEESGFPLELLSVIKKPGYKEPTPIQRQ 274 (673)
T ss_pred cchhhhhHHhcC--CccceeeecceeeeecCCCCCcc------------ccChhhcCCCHHHHHHHHhcCCCCCchHHHh
Confidence 455555555555 78898877777777777777655 3789999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceE
Q 009212 298 AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRS 377 (540)
Q Consensus 298 aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v 377 (540)
+||..+..+|+|++|.||||||+||++|++..+...+.-........+|+++||+||||||+||..+-.+|+.. .++++
T Consensus 275 aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~-lg~r~ 353 (673)
T KOG0333|consen 275 AIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKP-LGIRT 353 (673)
T ss_pred hccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccc-ccceE
Confidence 99999999999999999999999999999998865421111123457999999999999999999999999885 67999
Q ss_pred EEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCC-----
Q 009212 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT----- 452 (540)
Q Consensus 378 ~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~----- 452 (540)
+.++||....+|--.+..+|+|+|+||++|++.|.+..+.++++.|+|+||||+|+ |++|++++..|+.++|..
T Consensus 354 vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi-DmgfE~dv~~iL~~mPssn~k~~ 432 (673)
T KOG0333|consen 354 VSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI-DMGFEPDVQKILEQMPSSNAKPD 432 (673)
T ss_pred EEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh-cccccHHHHHHHHhCCccccCCC
Confidence 99999999999988899999999999999999999999999999999999999999 999999999999999731
Q ss_pred --------------------CcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhH
Q 009212 453 --------------------AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (540)
Q Consensus 453 --------------------~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~ 512 (540)
+|+++||||+|+.+..++..+|.++.++.....+...+.++|.++.++.+
T Consensus 433 tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed---------- 502 (673)
T KOG0333|consen 433 TDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSED---------- 502 (673)
T ss_pred ccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecch----------
Confidence 79999999999999999999999999999998999999999999998874
Q ss_pred hhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 513 FLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 513 ~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
.|...|.++|......++|||+|++.
T Consensus 503 --~k~kkL~eil~~~~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 503 --EKRKKLIEILESNFDPPIIIFVNTKK 528 (673)
T ss_pred --HHHHHHHHHHHhCCCCCEEEEEechh
Confidence 57899999999987789999999863
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.7e-44 Score=359.42 Aligned_cols=303 Identities=27% Similarity=0.378 Sum_probs=264.0
Q ss_pred ccCCCCCccCCCCCcCCCcccccccCCCCCCccCcccCCCCCcc--ccccccccCCCHHHHHHHHHCCCCCCcHHHHHHH
Q 009212 222 NKHEKSGTKIDRGWRSGGSIHNLQYEPTDCPKQRHKYSADGDFF--SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF 299 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~ai 299 (540)
.+...+.+.....|+++..+...+.+..+..+.+.+...+++-. ++++|.++.++..+++.|++.|+..|||||.+.+
T Consensus 122 akGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGl 201 (610)
T KOG0341|consen 122 AKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGL 201 (610)
T ss_pred hCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCc
Confidence 45556677788999999998888877666555555555666544 5789999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhc----C-CCC
Q 009212 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK----C-GVP 374 (540)
Q Consensus 300 p~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~----~-~~~ 374 (540)
|.+++|||+|.+|-||||||++|.||++.+.++++. .++.....+|.+|||||+||||.|+++.+..++. . .+.
T Consensus 202 PvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~-~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 202 PVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM-MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred ceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh-cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 999999999999999999999999999999887653 4677888999999999999999999998887643 2 256
Q ss_pred ceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCc
Q 009212 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQ 454 (540)
Q Consensus 375 l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q 454 (540)
++..++.||.+..+|+...+.|+||+|+||+||.++|..+.+.|.-++||++||||+|+ |++|+..++.|+.++..++|
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmi-DmGFEddir~iF~~FK~QRQ 359 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMI-DMGFEDDIRTIFSFFKGQRQ 359 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHh-hccchhhHHHHHHHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEE
Q 009212 455 YLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIV 534 (540)
Q Consensus 455 ~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtII 534 (540)
+++||||+|..|+.+....+-.++.+........+.++-|.+-++.. ..|+-.|++.|++.. .++||
T Consensus 360 TLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq------------EaKiVylLeCLQKT~-PpVLI 426 (610)
T KOG0341|consen 360 TLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ------------EAKIVYLLECLQKTS-PPVLI 426 (610)
T ss_pred eeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh------------hhhhhhHHHHhccCC-CceEE
Confidence 99999999999999999999888877766677777776665555544 358888888887754 58999
Q ss_pred Eeccc
Q 009212 535 FCNKK 539 (540)
Q Consensus 535 FcnSr 539 (540)
||..+
T Consensus 427 FaEkK 431 (610)
T KOG0341|consen 427 FAEKK 431 (610)
T ss_pred Eeccc
Confidence 99864
No 8
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.5e-40 Score=367.07 Aligned_cols=256 Identities=29% Similarity=0.460 Sum_probs=220.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||.+|||+|.++||.+++|+|+|++||||||||++|++|++.++..... .....+|
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~----~~~~~gp 204 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL----LRYGDGP 204 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----ccCCCCc
Confidence 468999999999999999999999999999999999999999999999999999999999998865321 1234578
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
.+|||+||||||.|+++.+++++.. ..+++.+++||.....+...+.++++|+|+||++|.+++..+...+.++++|||
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~-~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGAS-SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcc-cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 9999999999999999999999874 678899999999999998999999999999999999999998889999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC-ceEEeCCC-ccccCCCceeEEEEcCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPG-MHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~-~~~i~~~~-~~~~~~~I~q~~v~~~~~~~ 504 (540)
||||+|+ +++|...+..|+..++..+|+++||||+|.++..+...++.. +..+.... ......++.|.++.+..
T Consensus 284 DEAd~ml-d~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~--- 359 (545)
T PTZ00110 284 DEADRML-DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE--- 359 (545)
T ss_pred ehHHhhh-hcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec---
Confidence 9999999 899999999999999999999999999999998888777753 44433222 22345667787776654
Q ss_pred CCCchhhHhhhHHHHHHHHHHhC--CCCcEEEEecccC
Q 009212 505 SDKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKKS 540 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~~--~~~rtIIFcnSr~ 540 (540)
..|...|..++... ...++||||+|++
T Consensus 360 ---------~~k~~~L~~ll~~~~~~~~k~LIF~~t~~ 388 (545)
T PTZ00110 360 ---------HEKRGKLKMLLQRIMRDGDKILIFVETKK 388 (545)
T ss_pred ---------hhHHHHHHHHHHHhcccCCeEEEEecChH
Confidence 35777777777764 4579999999873
No 9
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-42 Score=340.31 Aligned_cols=248 Identities=27% Similarity=0.454 Sum_probs=230.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
..|++++|..+++..+.++||++|+|+|+++||.++.|+|+++.|..|+|||.||++|++..+... ....+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~---------~~~IQ 155 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK---------KNVIQ 155 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc---------cccee
Confidence 579999999999999999999999999999999999999999999999999999999999988543 35678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
++|++||||||.|+.+.|++++++ .++.+.+.+||++..+.+-++.+.+|++|+||+|++++...+...++++.+||+|
T Consensus 156 ~~ilVPtrelALQtSqvc~~lskh-~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~D 234 (459)
T KOG0326|consen 156 AIILVPTRELALQTSQVCKELSKH-LGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMD 234 (459)
T ss_pred EEEEeecchhhHHHHHHHHHHhcc-cCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEec
Confidence 999999999999999999999985 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~ 507 (540)
|||.|+ +..|.+.+++++..+|+.+|++++|||+|-.+..++.+++.+|..|..- .+.+...+.|+|-.+..
T Consensus 235 EADKlL-s~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e------ 306 (459)
T KOG0326|consen 235 EADKLL-SVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEE------ 306 (459)
T ss_pred hhhhhh-chhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeech------
Confidence 999999 7899999999999999999999999999999999999999998876544 34566778999988876
Q ss_pred chhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 508 ~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|+.+|..++.+....+.||||||.
T Consensus 307 ------~qKvhCLntLfskLqINQsIIFCNS~ 332 (459)
T KOG0326|consen 307 ------RQKVHCLNTLFSKLQINQSIIFCNST 332 (459)
T ss_pred ------hhhhhhHHHHHHHhcccceEEEeccc
Confidence 46999999999999889999999985
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.7e-40 Score=351.89 Aligned_cols=257 Identities=27% Similarity=0.402 Sum_probs=223.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||..|||+|+++||.++.|+|++++||||||||+||++|+++.+...... ......++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~--~~~~~~~~ 84 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP--EDRKVNQP 84 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc--cccccCCc
Confidence 3589999999999999999999999999999999999999999999999999999999999999764321 11123468
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||||||.|+++.+..+... .++++..++||.....+...+..+++|+|+||++|.+++..+.+.+.++++|||
T Consensus 85 ~~lil~PtreLa~Qi~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 85 RALIMAPTRELAVQIHADAEPLAQA-TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred eEEEECCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 9999999999999999999999874 678999999999988888888889999999999999999988899999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCC--CCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~--~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~ 504 (540)
||||+|+ +.+|...+..++..++. .+|+++||||++..+..++...+.++..+...........+.+.++.+..
T Consensus 164 DEad~l~-~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~--- 239 (423)
T PRK04837 164 DEADRMF-DLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN--- 239 (423)
T ss_pred ecHHHHh-hcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH---
Confidence 9999999 78999999999999874 57889999999999998888888887766555445555667777665543
Q ss_pred CCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++......++||||+++
T Consensus 240 ---------~~k~~~l~~ll~~~~~~~~lVF~~t~ 265 (423)
T PRK04837 240 ---------EEKMRLLQTLIEEEWPDRAIIFANTK 265 (423)
T ss_pred ---------HHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 36888899999887778999999986
No 11
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-40 Score=340.82 Aligned_cols=258 Identities=28% Similarity=0.458 Sum_probs=234.7
Q ss_pred cccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCC
Q 009212 265 FSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (540)
Q Consensus 265 ~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~ 344 (540)
.++.+|+.+|+.+.|+.++++..|.+|||+|.+++|..+.|+|++.+|.||||||.||+.|++.++..++. -....
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e----L~~g~ 295 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE----LKPGE 295 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh----hcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999986642 13478
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEE
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~L 424 (540)
+|.+||+|||||||.||+.++++|++. .+++++++|||.+..+|...|..+|.||||||+||++++.-+..++.++.||
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~-ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKA-YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhh-ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 999999999999999999999999884 7899999999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCC
Q 009212 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 425 VlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~ 504 (540)
||||||+|+ +++|+++++.|..+..+.+|+|+|||||+..|..+.+..|.+++.++.......+.+|.|.+..|.+.
T Consensus 375 V~DEadrmf-dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~-- 451 (731)
T KOG0339|consen 375 VLDEADRMF-DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE-- 451 (731)
T ss_pred EEechhhhh-ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc--
Confidence 999999999 89999999999999999999999999999999999999999998888778888999999999999875
Q ss_pred CCCchhhHhhhHHHHHHH-HHHhCCCCcEEEEeccc
Q 009212 505 SDKTPETAFLNKKSALLQ-LIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~-ll~~~~~~rtIIFcnSr 539 (540)
..|+.-|.. |......+++||||..+
T Consensus 452 ---------~~Kl~wl~~~L~~f~S~gkvlifVTKk 478 (731)
T KOG0339|consen 452 ---------EKKLNWLLRHLVEFSSEGKVLIFVTKK 478 (731)
T ss_pred ---------HHHHHHHHHHhhhhccCCcEEEEEecc
Confidence 356665444 33434456899999654
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=345.64 Aligned_cols=256 Identities=30% Similarity=0.447 Sum_probs=227.0
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
....|.++.|++..+++|+++||.++|++|+.+|+.++.|+|+++.|.||+|||+|||+|+++.+.+.. .....+
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~-----~~~r~~ 154 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLK-----FKPRNG 154 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcc-----cCCCCC
Confidence 346799999999999999999999999999999999999999999999999999999999999998764 234577
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-cccCCCccEE
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCA 424 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~L 424 (540)
..+||||||||||.|++.++++|..++..+.+.++.||.......+++.++|+|+|+|||||++++++. .+...++++|
T Consensus 155 ~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~l 234 (543)
T KOG0342|consen 155 TGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCL 234 (543)
T ss_pred eeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcccee
Confidence 889999999999999999999999986689999999999999999999999999999999999999884 4556778999
Q ss_pred EEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC-ceEEe--CCCccccCCCceeEEEEcCC
Q 009212 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD-CKVVM--GPGMHRISPGLEEFLVDCSG 501 (540)
Q Consensus 425 VlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~-~~~i~--~~~~~~~~~~I~q~~v~~~~ 501 (540)
|+||||+++ +++|+..|++|+..+|..+|+++||||.|++|.++..-.+.. +..+- ......+...++|-|+.++.
T Consensus 235 vlDEADrlL-d~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~ 313 (543)
T KOG0342|consen 235 VLDEADRLL-DIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPS 313 (543)
T ss_pred Eeecchhhh-hcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccc
Confidence 999999999 899999999999999999999999999999999888777754 44433 33455677789998888887
Q ss_pred CCCCCCchhhHhhhHHHHHHHHHHhCCC-CcEEEEeccc
Q 009212 502 DQESDKTPETAFLNKKSALLQLIEKSPV-SKTIVFCNKK 539 (540)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~ll~~~~~-~rtIIFcnSr 539 (540)
. ..+..|..+|+++.. .++||||.|.
T Consensus 314 ~------------~~f~ll~~~LKk~~~~~KiiVF~sT~ 340 (543)
T KOG0342|consen 314 D------------SRFSLLYTFLKKNIKRYKIIVFFSTC 340 (543)
T ss_pred c------------chHHHHHHHHHHhcCCceEEEEechh
Confidence 4 357788888888765 7999999985
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.6e-40 Score=355.05 Aligned_cols=249 Identities=29% Similarity=0.450 Sum_probs=223.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++++|++.++++|.++||..|||+|+++||.++.|+|++++||||||||+||++|+++++... ...++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~---------~~~~~ 74 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK---------RFRVQ 74 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc---------cCCce
Confidence 579999999999999999999999999999999999999999999999999999999999988532 23568
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+|||+||+|||.|+++.++.++....++++..++||.....+...+..+++|+|+||++|.+++.++.+.+.++++||||
T Consensus 75 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViD 154 (460)
T PRK11776 75 ALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLD 154 (460)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEE
Confidence 99999999999999999999987545789999999999999999999999999999999999999888889999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~ 507 (540)
|||+|+ +++|...+..++..++..+|+++||||+|+.+..+...++.++..+...... ....+.++++.+..
T Consensus 155 Ead~~l-~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~------ 226 (460)
T PRK11776 155 EADRML-DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP------ 226 (460)
T ss_pred CHHHHh-CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc------
Confidence 999999 8999999999999999999999999999999998888888887766544333 34558888887765
Q ss_pred chhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 508 ~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++......++||||||+
T Consensus 227 ------~~k~~~l~~ll~~~~~~~~lVF~~t~ 252 (460)
T PRK11776 227 ------DERLPALQRLLLHHQPESCVVFCNTK 252 (460)
T ss_pred ------HHHHHHHHHHHHhcCCCceEEEECCH
Confidence 35888999999888778999999986
No 14
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=347.79 Aligned_cols=253 Identities=28% Similarity=0.395 Sum_probs=229.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
...|++|+|+...+++|++.+|..||.||+++||..+.|+|+|..|.||||||+||++|++++|....+ ....|-
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW-----s~~DGl 142 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW-----SPTDGL 142 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCC-----CCCCCc
Confidence 357999999999999999999999999999999999999999999999999999999999999987643 445677
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-cccCCCccEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAI 425 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~LV 425 (540)
-||||.||||||.|++..+.+.+++ ..+..++++||........++. +++|||||||||+.++..+ .+..+++.+||
T Consensus 143 GalIISPTRELA~QtFevL~kvgk~-h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLv 220 (758)
T KOG0343|consen 143 GALIISPTRELALQTFEVLNKVGKH-HDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLV 220 (758)
T ss_pred eeEEecchHHHHHHHHHHHHHHhhc-cccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEE
Confidence 8999999999999999999999996 7899999999999888877775 4899999999999999775 56788999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeC--CCccccCCCceeEEEEcCCCC
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG--PGMHRISPGLEEFLVDCSGDQ 503 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~--~~~~~~~~~I~q~~v~~~~~~ 503 (540)
+||||+|+ ||||...+..|++.+|..+|+++||||-...+..+++-.+.+|.++-. .....++.+++|+|+.++.
T Consensus 221 LDEADR~L-DMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-- 297 (758)
T KOG0343|consen 221 LDEADRML-DMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-- 297 (758)
T ss_pred eccHHHHH-HHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh--
Confidence 99999999 999999999999999999999999999999998888877888766543 3446788899999999986
Q ss_pred CCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.+|+.+|..+++.+...++|||+.|.
T Consensus 298 ----------~~Ki~~L~sFI~shlk~K~iVF~Ssc 323 (758)
T KOG0343|consen 298 ----------EDKIDMLWSFIKSHLKKKSIVFLSSC 323 (758)
T ss_pred ----------hhHHHHHHHHHHhccccceEEEEehh
Confidence 46999999999999989999999875
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.5e-39 Score=352.35 Aligned_cols=254 Identities=30% Similarity=0.458 Sum_probs=222.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~a 348 (540)
+|++|+|++.++++|.++||..||++|.++||.++.|+|+|++||||||||++|++|+++.+...... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~---~~~~~~~~a 78 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH---AKGRRPVRA 78 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc---cccCCCceE
Confidence 69999999999999999999999999999999999999999999999999999999999998654211 111234689
Q ss_pred EEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 349 LIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
|||+||+|||.|+++.++.+..+ .++++..++|+.....+...+..+++|+|+||++|++++....+.++++++|||||
T Consensus 79 Lil~PtreLa~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDE 157 (456)
T PRK10590 79 LILTPTRELAAQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDE 157 (456)
T ss_pred EEEeCcHHHHHHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeec
Confidence 99999999999999999999875 67899999999999888888888899999999999999998888999999999999
Q ss_pred CcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCc
Q 009212 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~ 508 (540)
||+|+ +++|...+..++..++..+|+++||||++.++..++..++.++..+...........+.+++..+..
T Consensus 158 ah~ll-~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------- 229 (456)
T PRK10590 158 ADRML-DMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK------- 229 (456)
T ss_pred HHHHh-ccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-------
Confidence 99999 7899999999999999999999999999999988888888887665544444455667777776654
Q ss_pred hhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 509 ~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++......++||||||+
T Consensus 230 -----~~k~~~l~~l~~~~~~~~~lVF~~t~ 255 (456)
T PRK10590 230 -----KRKRELLSQMIGKGNWQQVLVFTRTK 255 (456)
T ss_pred -----HHHHHHHHHHHHcCCCCcEEEEcCcH
Confidence 35677788888887778999999996
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.3e-39 Score=361.73 Aligned_cols=250 Identities=29% Similarity=0.467 Sum_probs=225.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|.+|+|++.++++|.++||.+|||+|.++||.++.|+|+|++||||||||+||++|+++.+... ...++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~---------~~~~~ 76 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---------LKAPQ 76 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc---------cCCCe
Confidence 469999999999999999999999999999999999999999999999999999999999987542 24679
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+|||+||++||.|+++.+..+.....++.+..++||.....+...+..+++|||+||++|++++.++.+.++++++||||
T Consensus 77 ~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 77 ILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 99999999999999999999877545789999999999999999998999999999999999999988899999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~ 507 (540)
|||.|+ +++|...+..|+..++..+|+++||||+|..+..+...++.++..+...........+.|.++.+..
T Consensus 157 EAd~ml-~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~------ 229 (629)
T PRK11634 157 EADEML-RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG------ 229 (629)
T ss_pred cHHHHh-hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech------
Confidence 999999 8999999999999999999999999999999998888888887766555455556678888877664
Q ss_pred chhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 508 ~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++......++||||+|+
T Consensus 230 ------~~k~~~L~~~L~~~~~~~~IVF~~tk 255 (629)
T PRK11634 230 ------MRKNEALVRFLEAEDFDAAIIFVRTK 255 (629)
T ss_pred ------hhHHHHHHHHHHhcCCCCEEEEeccH
Confidence 35888899999887778999999986
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.2e-39 Score=353.90 Aligned_cols=257 Identities=26% Similarity=0.432 Sum_probs=220.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++...... ......++
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~--~~~~~~~~ 197 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG--HPSEQRNP 197 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc--cccccCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999988643211 11223678
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||||||.|+++.++.+.+. .++++..++||.....+...+..+++|+|+||++|.+++..+.+.+.++++|||
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~-~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKG-LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 9999999999999999999998773 678899999999999888889899999999999999999988889999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||+|+ +++|...+..|+..++ .+|+++||||++.++..+...++.++..+...........+.|+++.+..
T Consensus 277 DEad~ml-~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~----- 349 (518)
T PLN00206 277 DEVDCML-ERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET----- 349 (518)
T ss_pred ecHHHHh-hcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-----
Confidence 9999999 7899999999999886 68999999999999988887778777766555445555667888777764
Q ss_pred CchhhHhhhHHHHHHHHHHhCC--CCcEEEEecccC
Q 009212 507 KTPETAFLNKKSALLQLIEKSP--VSKTIVFCNKKS 540 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~--~~rtIIFcnSr~ 540 (540)
..|...|.+++.... ..++||||||+.
T Consensus 350 -------~~k~~~l~~~l~~~~~~~~~~iVFv~s~~ 378 (518)
T PLN00206 350 -------KQKKQKLFDILKSKQHFKPPAVVFVSSRL 378 (518)
T ss_pred -------hhHHHHHHHHHHhhcccCCCEEEEcCCch
Confidence 246667777776532 358999999973
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=336.63 Aligned_cols=255 Identities=26% Similarity=0.414 Sum_probs=223.8
Q ss_pred ccccccCC--CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 268 KSFKELGC--SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 268 ~~F~~l~L--~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
..|++++. +++++++|..+||..+||+|..+||.++.++||++.|+||||||+||++|++..+...... .....
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~----~~~~~ 79 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK----TPPGQ 79 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccC----CCccc
Confidence 35777764 5999999999999999999999999999999999999999999999999999999654322 11224
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhcc--ccCCCcc
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGI--LQLINLR 422 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~--~~l~~i~ 422 (540)
.-+|||+||||||.||.+++..+..+-.++.+.+++||....+.+..+. ++++|+|||||||.+++++.. +++.++.
T Consensus 80 vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe 159 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLE 159 (567)
T ss_pred eeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccc
Confidence 5799999999999999999999887557889999999999988888775 579999999999999999854 4455999
Q ss_pred EEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccc--cCCCceeEEEEcC
Q 009212 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHR--ISPGLEEFLVDCS 500 (540)
Q Consensus 423 ~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~--~~~~I~q~~v~~~ 500 (540)
+||+||||+++ |+||...+..|++.+|+++++=+||||...++.++....++|+..+....... ++..+..+|+.|.
T Consensus 160 ~LVLDEADrLl-dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 160 ILVLDEADRLL-DMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred eEEecchHhHh-cccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 99999999999 99999999999999999999999999999999999888999988766543333 7777888888888
Q ss_pred CCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
. ..|...|+++|.....+++|||.+|.
T Consensus 239 a------------~eK~~~lv~~L~~~~~kK~iVFF~TC 265 (567)
T KOG0345|consen 239 A------------DEKLSQLVHLLNNNKDKKCIVFFPTC 265 (567)
T ss_pred H------------HHHHHHHHHHHhccccccEEEEecCc
Confidence 6 47999999999999889999998875
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-39 Score=358.48 Aligned_cols=257 Identities=30% Similarity=0.440 Sum_probs=221.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++|+|++.++++|.++||..|||+|+++||.++.|+|++++||||||||++|++|+++++..... ........++
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~--~~~~~~~~~r 86 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPA--LADRKPEDPR 86 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--ccccccCCce
Confidence 36999999999999999999999999999999999999999999999999999999999999875321 1111223689
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-cccCCCccEEEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAIL 426 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~LVl 426 (540)
+|||+||+|||.|+++.+..++.. .++++..++|+.....+...+..+++|||+||++|++++... .+.+..+++|||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~-~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGAD-LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 999999999999999999999874 678999999999999888888888999999999999998764 567899999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCC--CCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~--~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~ 504 (540)
||||+|+ +.+|...+..|+..++. .+|+++||||++..+.+++..++.++..+...........+.|.++.+..
T Consensus 166 DEAh~ll-d~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--- 241 (572)
T PRK04537 166 DEADRMF-DLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD--- 241 (572)
T ss_pred cCHHHHh-hcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH---
Confidence 9999999 78999999999999986 78999999999999999998888877555443334455567777776543
Q ss_pred CCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..|+..|..++......++||||||++
T Consensus 242 ---------~~k~~~L~~ll~~~~~~k~LVF~nt~~ 268 (572)
T PRK04537 242 ---------EEKQTLLLGLLSRSEGARTMVFVNTKA 268 (572)
T ss_pred ---------HHHHHHHHHHHhcccCCcEEEEeCCHH
Confidence 368888999998877789999999963
No 20
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-40 Score=342.45 Aligned_cols=263 Identities=27% Similarity=0.391 Sum_probs=217.5
Q ss_pred CCccccccccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCC
Q 009212 262 GDFFSRKSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSK 340 (540)
Q Consensus 262 ~~~~~~~~F~~l~L~~~ll~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~ 340 (540)
+..+....|..+||++.+...|.. +++..||.+|+++||.++.|+|++|.++||||||+||++|+++.|...... -
T Consensus 130 e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k---i 206 (708)
T KOG0348|consen 130 EAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK---I 206 (708)
T ss_pred ccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc---c
Confidence 344556789999999999999987 599999999999999999999999999999999999999999999875422 2
Q ss_pred CCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh-ccccCC
Q 009212 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLI 419 (540)
Q Consensus 341 ~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~-~~~~l~ 419 (540)
.+..|+.+|||+||||||.|+|+.+.+|.+...-+.-+.+.||...+....+|++|++|||+|||||+++|.+ ..+.++
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 3678999999999999999999999999875455667789999998888899999999999999999999987 567899
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCC-------------CCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCc-
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSP-------------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGM- 485 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-------------~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~- 485 (540)
.+++||+||+|+++ +.||+..|..|++.+. ...|.+++|||+...|..+..-.+.++..|-.+..
T Consensus 287 ~LRwlVlDEaDrll-eLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~ 365 (708)
T KOG0348|consen 287 RLRWLVLDEADRLL-ELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSH 365 (708)
T ss_pred eeeEEEecchhHHH-hccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchh
Confidence 99999999999999 8999999999998762 24799999999999999888878888877762211
Q ss_pred ------------------------cccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHH----HHhCCCCcEEEEec
Q 009212 486 ------------------------HRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQL----IEKSPVSKTIVFCN 537 (540)
Q Consensus 486 ------------------------~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~l----l~~~~~~rtIIFcn 537 (540)
..++..+.|.|+.++.. -.+-+|..+ ++.....++|||..
T Consensus 366 ~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK------------LRLV~Laa~L~~~~k~~~~qk~iVF~S 433 (708)
T KOG0348|consen 366 SQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK------------LRLVALAALLLNKVKFEEKQKMIVFFS 433 (708)
T ss_pred hhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc------------hhHHHHHHHHHHHhhhhhhceeEEEEe
Confidence 23344566666666652 233344444 44455668999998
Q ss_pred ccC
Q 009212 538 KKS 540 (540)
Q Consensus 538 Sr~ 540 (540)
+.+
T Consensus 434 ~~d 436 (708)
T KOG0348|consen 434 CSD 436 (708)
T ss_pred chh
Confidence 764
No 21
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-40 Score=334.81 Aligned_cols=257 Identities=27% Similarity=0.417 Sum_probs=222.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++|||.+.+++++.+.||++||-||+.+||.++.|+|+++.|.||||||+||++|+++.++...... ....++.
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~---~~e~~~s 95 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN---DGEQGPS 95 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc---cccccce
Confidence 6899999999999999999999999999999999999999999999999999999999999998765332 4567899
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCC-CceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc-ccCCCccEEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-LQLINLRCAI 425 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~-~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~-~~l~~i~~LV 425 (540)
++||+||||||.|++..+.+|..++. .+++.-+....+.......|...++|+|+||++++.++..+. ..+..+++||
T Consensus 96 a~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LV 175 (569)
T KOG0346|consen 96 AVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLV 175 (569)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEE
Confidence 99999999999999999999876533 567766776666666667777889999999999999999877 6788999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCC-CccccCCCceeEEEEcCCCCC
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP-GMHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~-~~~~~~~~I~q~~v~~~~~~~ 504 (540)
+||||.|+ ..||++.+..|.+++|+..|.+++|||+..+|..+=.-.+.+|.++... .....+..+.|+++.|+.
T Consensus 176 vDEADLll-sfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse--- 251 (569)
T KOG0346|consen 176 VDEADLLL-SFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE--- 251 (569)
T ss_pred echhhhhh-hcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc---
Confidence 99999999 7999999999999999999999999999999987766677888876543 333456779999999985
Q ss_pred CCCchhhHhhhHHHHHHHHHHh-CCCCcEEEEecccC
Q 009212 505 SDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKKS 540 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~-~~~~rtIIFcnSr~ 540 (540)
.+|...|+.+++- .-.+++||||||.+
T Consensus 252 ---------~DKflllyallKL~LI~gKsliFVNtId 279 (569)
T KOG0346|consen 252 ---------EDKFLLLYALLKLRLIRGKSLIFVNTID 279 (569)
T ss_pred ---------chhHHHHHHHHHHHHhcCceEEEEechh
Confidence 3578778877764 34578999999975
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-39 Score=327.27 Aligned_cols=255 Identities=26% Similarity=0.449 Sum_probs=220.9
Q ss_pred cccccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 267 RKSFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 267 ~~~F~~-l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
.-+|++ |...+++|+.+++.||.+|||||.+|||.+|.|.|++++|+||+|||++||+|.+.++..+... .....+
T Consensus 218 ~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~---~~qr~~ 294 (629)
T KOG0336|consen 218 VCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKR---REQRNG 294 (629)
T ss_pred cCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchh---hhccCC
Confidence 357877 4678999999999999999999999999999999999999999999999999999887654322 234678
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEE
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LV 425 (540)
|.+|+++||||||.|+.-++.++.- .+++..+++||.+..+|++.+..+++|+|+||++|.++...+.++|..|.|||
T Consensus 295 p~~lvl~ptreLalqie~e~~kysy--ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYSY--NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhhh--cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 9999999999999999999988753 56899999999999999999999999999999999999999999999999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCcc-ccCCCceeEEEEcCCCCC
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMH-RISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~-~~~~~I~q~~v~~~~~~~ 504 (540)
|||||+|+ ||+|+++|++|+-...+.+|+++.|||||+.+..+...+++++.++....+. .....++|.++....
T Consensus 373 lDEADrML-DMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d--- 448 (629)
T KOG0336|consen 373 LDEADRML-DMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTD--- 448 (629)
T ss_pred ecchhhhh-cccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEeccc---
Confidence 99999999 9999999999999999999999999999999999999999998776554333 344567787754332
Q ss_pred CCCchhhHhhhHHHHHHHHHHhC-CCCcEEEEeccc
Q 009212 505 SDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKK 539 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~~-~~~rtIIFcnSr 539 (540)
..|+..+..+++.. ...++||||..+
T Consensus 449 ---------~~k~~~~~~f~~~ms~ndKvIiFv~~K 475 (629)
T KOG0336|consen 449 ---------SEKLEIVQFFVANMSSNDKVIIFVSRK 475 (629)
T ss_pred ---------HHHHHHHHHHHHhcCCCceEEEEEech
Confidence 46777666666654 567999999864
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-40 Score=345.88 Aligned_cols=259 Identities=31% Similarity=0.483 Sum_probs=228.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCC-CCCC
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST-SGSP 346 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~-~~~p 346 (540)
.+|.+..+.+.++.+++..+|..|||+|+.+||.+..|+|+++||+||||||.|||+|++.+++.+......... ...|
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999876433222222 2479
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
.+|||+||||||.|++++++++.- ...++++..+||.+...+.+.+.++|||+|||||+|.+++..+.+.|..++||||
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~-~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSY-LSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcc-cccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 999999999999999999999864 4678999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccCCC-CCHHHHHHHHHHhCCC----CCcEEEEeccCCHHHHHHHHHhCCC-ceEEeCCCccccCCCceeEEEEcC
Q 009212 427 DEVDILFND-EDFEVALQSLISSSPV----TAQYLFVTATLPVEIYNKLVEVFPD-CKVVMGPGMHRISPGLEEFLVDCS 500 (540)
Q Consensus 427 DEad~ll~d-~~f~~~i~~Il~~l~~----~~Q~ll~SATlp~~i~~~l~~~l~~-~~~i~~~~~~~~~~~I~q~~v~~~ 500 (540)
||||+|+ | ++|.+.|++|+.++.. .+|++|||||+|.++..++..++.+ +..+-......+..++.|.++.+.
T Consensus 233 DEADrMl-D~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 233 DEADRML-DEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN 311 (482)
T ss_pred cchHHhh-hhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec
Confidence 9999999 6 9999999999998754 7899999999999999987777776 555555667788899999999988
Q ss_pred CCCCCCCchhhHhhhHHHHHHHHHHhCC----CC-----cEEEEecccC
Q 009212 501 GDQESDKTPETAFLNKKSALLQLIEKSP----VS-----KTIVFCNKKS 540 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~ll~~~~----~~-----rtIIFcnSr~ 540 (540)
. .+|...|++++.... .. .++|||+|++
T Consensus 312 ~------------~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~ 348 (482)
T KOG0335|consen 312 E------------MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKR 348 (482)
T ss_pred c------------hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccc
Confidence 6 468888888887432 23 8999999874
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.6e-38 Score=337.88 Aligned_cols=254 Identities=30% Similarity=0.492 Sum_probs=220.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~a 348 (540)
+|++|+|++.++++|.++||..|+++|.++||.++.|+|++++||||+|||++|++|+++++.... ......+++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~-----~~~~~~~~~ 76 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP-----RRKSGPPRI 76 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCceE
Confidence 699999999999999999999999999999999999999999999999999999999999987531 122345799
Q ss_pred EEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 349 LIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
|||+||++||.|+++.+..++.. .++.+..++||.....+...+..+++|||+||++|++++..+.+.+.++++|||||
T Consensus 77 lil~Pt~eLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 77 LILTPTRELAMQVADQARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEECCcHHHHHHHHHHHHHHHcc-CCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 99999999999999999999875 67899999999999888888888899999999999999998888899999999999
Q ss_pred CcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHH-HHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 009212 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE-IYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~-i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~ 507 (540)
||+|+ +++|...+..+...++..+|+++||||++.. +..+....+.++..+...........+.|+++.+...
T Consensus 156 ah~~l-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----- 229 (434)
T PRK11192 156 ADRML-DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL----- 229 (434)
T ss_pred HHHHh-CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH-----
Confidence 99999 8999999999999999899999999999854 5555555566666555444445556678887766542
Q ss_pred chhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 508 ~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..|...|..+++.....++||||||++
T Consensus 230 ------~~k~~~l~~l~~~~~~~~~lVF~~s~~ 256 (434)
T PRK11192 230 ------EHKTALLCHLLKQPEVTRSIVFVRTRE 256 (434)
T ss_pred ------HHHHHHHHHHHhcCCCCeEEEEeCChH
Confidence 368888999998767789999999974
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.2e-37 Score=333.60 Aligned_cols=257 Identities=27% Similarity=0.428 Sum_probs=219.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
..|.+++|++.++++|.++||..||++|.++|+.++.|+|+|+++|||||||+||++|+++.+...... .......++
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~--~~~~~~~~~ 164 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP--KERYMGEPR 164 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc--cccccCCce
Confidence 479999999999999999999999999999999999999999999999999999999999998754211 001123589
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
+|||+||+|||.|+++.++.+.+. .++.+..++||.....+.+.+. ..++|||+||++|+.++..+...++++++|||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999999999999999999999874 5788999999988877777765 46899999999999999888889999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCC--CCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~--~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~ 504 (540)
||||+++ +++|...+..|+..++. .+|++++|||++.++.+++..++.++..+..........++.+.++.+..
T Consensus 244 DEah~l~-~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--- 319 (475)
T PRK01297 244 DEADRML-DMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG--- 319 (475)
T ss_pred chHHHHH-hcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc---
Confidence 9999999 78999999999998864 57999999999999999888888887766544444455567777776654
Q ss_pred CCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..|...|..++......++||||++++
T Consensus 320 ---------~~k~~~l~~ll~~~~~~~~IVF~~s~~ 346 (475)
T PRK01297 320 ---------SDKYKLLYNLVTQNPWERVMVFANRKD 346 (475)
T ss_pred ---------hhHHHHHHHHHHhcCCCeEEEEeCCHH
Confidence 357788889988877789999999973
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-38 Score=331.74 Aligned_cols=258 Identities=28% Similarity=0.452 Sum_probs=204.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCCchhhcHHHHHHHHHHHH--hhccCCCCCC
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEE--LQGLSKSTSG 344 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G-~dvlv~ApTGSGKTlayllpil~~l~~~~--~~~~~~~~~~ 344 (540)
.-|..|+|+.+++++|..+||.+||+||..+||++..| .|+++.|.||||||+||-+||+..+.+.. .+.+......
T Consensus 181 sAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 181 SAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred HHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 35888899999999999999999999999999999999 79999999999999999999999665321 1111112233
Q ss_pred CC--EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc---cCC
Q 009212 345 SP--RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL---QLI 419 (540)
Q Consensus 345 ~p--~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~---~l~ 419 (540)
++ .+||++||||||.|+.+.+..++.+ .++++..++||.....|.+.|...++|+|||||||+.++..+.. .+.
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~-t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEK-TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccc-cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 44 5999999999999999999999986 78999999999999999999999999999999999999987654 577
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCC-----CCCcEEEEeccCCHH---------------------HHHHHHHh
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSP-----VTAQYLFVTATLPVE---------------------IYNKLVEV 473 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-----~~~Q~ll~SATlp~~---------------------i~~~l~~~ 473 (540)
.++||||||+|+|+ ..|+-..+..|+++++ .++|+++||||+.-. +..++...
T Consensus 340 ~vkcLVlDEaDRmv-ekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 340 KVKCLVLDEADRMV-EKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hceEEEEccHHHHh-hhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 89999999999999 5676677788877764 468999999998422 22222221
Q ss_pred --CCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 474 --FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 474 --l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..++.+|-......+...+....+.|+.. +|-..|+-+|..++ ++||||||+.+
T Consensus 419 g~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~------------eKD~ylyYfl~ryP-GrTlVF~NsId 474 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSATASTLTESLIECPPL------------EKDLYLYYFLTRYP-GRTLVFCNSID 474 (731)
T ss_pred CccCCCeeEecCcchhHHHHHHHHhhcCCcc------------ccceeEEEEEeecC-CceEEEechHH
Confidence 13455655555555666666667777542 35555666666665 68999999974
No 27
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-38 Score=350.07 Aligned_cols=257 Identities=28% Similarity=0.477 Sum_probs=226.9
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
+..+|.+.|++..++..++++||.+|+|||.+|||+|+.|+|||++|.||||||++|+||++.++..+. ......+
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr----~~~~gdG 438 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR----PLEEGDG 438 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCC----ChhhCCC
Confidence 457999999999999999999999999999999999999999999999999999999999997776543 2234569
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc---ccCCCcc
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI---LQLINLR 422 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~---~~l~~i~ 422 (540)
|.+||++||||||.||++.+++|+.. .++++++++||.....++..+++++.|+||||+++++++-.+. .++.++.
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999999986 8999999999999999999999999999999999999886544 3556666
Q ss_pred EEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCC
Q 009212 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502 (540)
Q Consensus 423 ~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~ 502 (540)
+||+||||+|+ |++|.+++..|++.++..+|+++||||+|..+..+....+..|..++..........+.|.+..|..+
T Consensus 518 ~lv~deaDrmf-dmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e 596 (997)
T KOG0334|consen 518 YLVLDEADRMF-DMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIE 596 (997)
T ss_pred eeeechhhhhh-eeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCc
Confidence 99999999999 99999999999999999999999999999999988888887776655556677788899999988853
Q ss_pred CCCCCchhhHhhhHHHHHHHHHHhC-CCCcEEEEeccc
Q 009212 503 QESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKK 539 (540)
Q Consensus 503 ~~~~~~~~~~~~~K~~~L~~ll~~~-~~~rtIIFcnSr 539 (540)
..|+..|+++|... ...++||||.+.
T Consensus 597 -----------~eKf~kL~eLl~e~~e~~~tiiFv~~q 623 (997)
T KOG0334|consen 597 -----------NEKFLKLLELLGERYEDGKTIIFVDKQ 623 (997)
T ss_pred -----------hHHHHHHHHHHHHHhhcCCEEEEEcCc
Confidence 46888888888763 356999999764
No 28
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=311.43 Aligned_cols=250 Identities=26% Similarity=0.357 Sum_probs=217.9
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
.+.|+.|||++++.+.|+++|..+|||+|+.+||.|+.|+|+|.+|.||||||.||.+|+++++.+. ..+.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed---------P~gi 76 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED---------PYGI 76 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC---------CCcc
Confidence 3679999999999999999999999999999999999999999999999999999999999999875 4578
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc----cccCCCcc
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLR 422 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~----~~~l~~i~ 422 (540)
.++|++||||||.|+.++|..+++. ..+++.+++||..+-.|...|...+||+|+|||++.+++..+ ...+.+++
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~-l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlk 155 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKL-LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLK 155 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhccc-ccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhcee
Confidence 8999999999999999999999885 789999999999999999999999999999999999999875 23478999
Q ss_pred EEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC--ceEEeCCCccccCCCceeEEEEcC
Q 009212 423 CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCS 500 (540)
Q Consensus 423 ~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~--~~~i~~~~~~~~~~~I~q~~v~~~ 500 (540)
+||+||||+|+ +..|...++.+.+-+|..+|+++||||+...+.++..-...+ +..........+...+.|.|+.|+
T Consensus 156 flVlDEADrvL-~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 156 FLVLDEADRVL-AGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred eEEecchhhhh-ccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc
Confidence 99999999999 789999999999999999999999999999887665444433 233333334456667888888888
Q ss_pred CCCCCCCchhhHhhhHHHHHHHHHHhC---CCCcEEEEeccc
Q 009212 501 GDQESDKTPETAFLNKKSALLQLIEKS---PVSKTIVFCNKK 539 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~ll~~~---~~~rtIIFcnSr 539 (540)
. ..|-..|+++|+.. ..+.++||+|+.
T Consensus 235 ~------------~vkdaYLv~~Lr~~~~~~~~simIFvntt 264 (442)
T KOG0340|consen 235 I------------DVKDAYLVHLLRDFENKENGSIMIFVNTT 264 (442)
T ss_pred h------------hhhHHHHHHHHhhhhhccCceEEEEeehh
Confidence 6 35777888888764 356899999974
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-35 Score=315.84 Aligned_cols=252 Identities=26% Similarity=0.435 Sum_probs=218.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.+.||..|+|+|.++|+.++.|+|++++||||||||++|++|+++.+... ..+.
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~---------~~~~ 97 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD---------LNAC 97 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC---------CCCc
Confidence 3689999999999999999999999999999999999999999999999999999999999877421 2467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||++|+.|+.+.+..++.. ..+.+..++|+.....+...+..+++|+|+||++|.+++.++...+.++++|||
T Consensus 98 ~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 98 QALILAPTRELAQQIQKVVLALGDY-LKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred eEEEECCCHHHHHHHHHHHHHHhhh-cCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 8999999999999999999998864 567888889999888888888888999999999999999888888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||+++ +.+|...+..+++.++...|++++|||+|.++..+...++.++..+...........+.++++.+...
T Consensus 177 DEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 251 (401)
T PTZ00424 177 DEADEML-SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKE---- 251 (401)
T ss_pred ecHHHHH-hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChH----
Confidence 9999999 67899999999999999999999999999999888888887776655444344556677777766532
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..+...+..++......++||||+|++
T Consensus 252 -------~~~~~~l~~~~~~~~~~~~ivF~~t~~ 278 (401)
T PTZ00424 252 -------EWKFDTLCDLYETLTITQAIIYCNTRR 278 (401)
T ss_pred -------HHHHHHHHHHHHhcCCCeEEEEecCcH
Confidence 246777888888777789999999974
No 30
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-37 Score=309.51 Aligned_cols=257 Identities=26% Similarity=0.440 Sum_probs=229.4
Q ss_pred CCCCccccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhc
Q 009212 260 ADGDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQG 337 (540)
Q Consensus 260 ~~~~~~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~ 337 (540)
.+.++++.++|++|+|.++++++|+.|+|.+|+.||+.|+|.++.. +|+|.++++|+|||.||.|.++.++.-.
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 4567889999999999999999999999999999999999999976 7999999999999999999999987543
Q ss_pred cCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh-ccc
Q 009212 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GIL 416 (540)
Q Consensus 338 ~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~-~~~ 416 (540)
...|+++.|+||||||.|+.+.+.+++++ ..++...+.-+.....- ..+ ..+|+|+||+.+++++.. ..+
T Consensus 158 -----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf-~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~i 228 (477)
T KOG0332|consen 158 -----VVVPQCICLAPTRELAPQTGEVVEEMGKF-TELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCI 228 (477)
T ss_pred -----ccCCCceeeCchHHHHHHHHHHHHHhcCc-eeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhh
Confidence 45789999999999999999999999997 47788777766522211 111 148999999999999988 889
Q ss_pred cCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEE
Q 009212 417 QLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496 (540)
Q Consensus 417 ~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~ 496 (540)
.+..++++|+||||.|+...||.++-.+|+..+|.+.|.++||||+...+..++.+.++++..++.........+|+|+|
T Consensus 229 d~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQly 308 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLY 308 (477)
T ss_pred ChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhe
Confidence 99999999999999999777899999999999999999999999999999999999999999888888888888999999
Q ss_pred EEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 497 v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
+.|... .+|..+|.+++.-...+++||||.|+.
T Consensus 309 v~C~~~-----------~~K~~~l~~lyg~~tigqsiIFc~tk~ 341 (477)
T KOG0332|consen 309 VLCACR-----------DDKYQALVNLYGLLTIGQSIIFCHTKA 341 (477)
T ss_pred eeccch-----------hhHHHHHHHHHhhhhhhheEEEEeehh
Confidence 999986 479999999999988999999999873
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-36 Score=308.83 Aligned_cols=250 Identities=30% Similarity=0.458 Sum_probs=228.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
-.|+.+||...++++|.+.||..|||||++.||.++.|+|++..|.||||||.||++|+++++... ...+.+
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~--------s~~g~R 92 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH--------SQTGLR 92 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc--------cccccc
Confidence 369999999999999999999999999999999999999999999999999999999999998753 246789
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
++|+.|||+||.|+.+.++.+++. ..+++.+++||..+++|...+..++|||+|||++++.+.-.-.+.|+.+.|+|+|
T Consensus 93 alilsptreLa~qtlkvvkdlgrg-t~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfd 171 (529)
T KOG0337|consen 93 ALILSPTRELALQTLKVVKDLGRG-TKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFD 171 (529)
T ss_pred eeeccCcHHHHHHHHHHHHHhccc-cchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeeh
Confidence 999999999999999999999984 8899999999999999999999899999999999998876656889999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~ 507 (540)
|||.++ .+||.+++..++..++..+|+++||||+|..+..+...-+.++..+-.+-...+...++..+..+..
T Consensus 172 Eadrlf-emgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~------ 244 (529)
T KOG0337|consen 172 EADRLF-EMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK------ 244 (529)
T ss_pred hhhHHH-hhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc------
Confidence 999999 7999999999999999999999999999999999998888888877766666777778888887776
Q ss_pred chhhHhhhHHHHHHHHHHhCC-CCcEEEEeccc
Q 009212 508 TPETAFLNKKSALLQLIEKSP-VSKTIVFCNKK 539 (540)
Q Consensus 508 ~~~~~~~~K~~~L~~ll~~~~-~~rtIIFcnSr 539 (540)
.+|..+|+.++.... .+++||||.|+
T Consensus 245 ------a~K~aaLl~il~~~~~~~~t~vf~~tk 271 (529)
T KOG0337|consen 245 ------AEKEAALLSILGGRIKDKQTIVFVATK 271 (529)
T ss_pred ------HHHHHHHHHHHhccccccceeEEeccc
Confidence 479999999998753 46899999986
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-36 Score=302.38 Aligned_cols=249 Identities=24% Similarity=0.453 Sum_probs=224.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|+++++++++..||++|+.||+.||.++..|.|+++.+++|+|||.+|++++++.+... ....
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~---------~ke~ 95 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS---------VKET 95 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc---------hHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999998432 2345
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LV 425 (540)
.||+++||||||.|+......++.+ .++++..+.||.....+...+. ..++|+|+||+++.+++..+.+....++++|
T Consensus 96 qalilaPtreLa~qi~~v~~~lg~~-~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfv 174 (397)
T KOG0327|consen 96 QALILAPTRELAQQIQKVVRALGDH-MDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFV 174 (397)
T ss_pred HHHHhcchHHHHHHHHHHHHhhhcc-cceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEe
Confidence 6999999999999999999999875 6789999999998875544444 4689999999999999999988888999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCC
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~ 505 (540)
+||||.|+ ..+|.+.|..|++++|.+.|++++|||+|.++...-.+++.++..+.......+...++|+++.+...
T Consensus 175 lDEaDEmL-s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~--- 250 (397)
T KOG0327|consen 175 LDEADEML-SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKE--- 250 (397)
T ss_pred ecchHhhh-ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeecccc---
Confidence 99999999 68999999999999999999999999999999999999999998888777777888899999988753
Q ss_pred CCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 506 ~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
.|+..|..+++ ...+.+|||||++
T Consensus 251 ---------~k~~~l~dl~~--~~~q~~if~nt~r 274 (397)
T KOG0327|consen 251 ---------EKLDTLCDLYR--RVTQAVIFCNTRR 274 (397)
T ss_pred ---------ccccHHHHHHH--hhhcceEEecchh
Confidence 38999999999 5579999999974
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4e-35 Score=311.11 Aligned_cols=259 Identities=27% Similarity=0.408 Sum_probs=232.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
...|+++-|..+++.+|+..+|..||+||..|||+++.+.|+||+|..|+|||++|.+.+++.+..+ ...+
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~---------~~~~ 94 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR---------SSHI 94 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc---------cCcc
Confidence 4689999999999999999999999999999999999999999999999999999999999887533 5678
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
+++||+||||+|.||...+.+++....++++.+++||+.......++.+ ++|+|+|||||..|+..+.++.+.++++||
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 9999999999999999999999986578999999999999888777765 899999999999999999999999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||.|++...|...|..|+..+|..+|+++||||.|..+.+.+.+++.++..+-........-.|+|+|+.++....
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nn-- 251 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNN-- 251 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcc--
Confidence 999999954779999999999999999999999999999999999999999887766666667789999888776421
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..-.+..|+..|-++++..+..++||||+..
T Consensus 252 --sveemrlklq~L~~vf~~ipy~QAlVF~~~~ 282 (980)
T KOG4284|consen 252 --SVEEMRLKLQKLTHVFKSIPYVQALVFCDQI 282 (980)
T ss_pred --hHHHHHHHHHHHHHHHhhCchHHHHhhhhhh
Confidence 1223456888999999999999999999864
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=280.00 Aligned_cols=251 Identities=23% Similarity=0.375 Sum_probs=224.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.-|.++-|.+++++++-..||+.|+.+|.++||...-|.|++++|.+|.|||.+|.+..++.+.- ......
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep---------v~g~vs 112 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP---------VDGQVS 112 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC---------CCCeEE
Confidence 45999999999999999999999999999999999999999999999999999999999988742 234567
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+|++|.|||||.||.++...+.+|-+.+++.+.+||...+...+.+.+.+||+|+|||+++.+.+++.+.+++++++|+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 99999999999999999999999988999999999999998888898989999999999999999999999999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCC-ccccCCCceeEEEEcCCCCCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~-~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
|||.|++....+..++.|++..|...|+++||||++.++.....+++.+|..++.+. ...+...++|+|+.++.
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke----- 267 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE----- 267 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-----
Confidence 999999767799999999999999999999999999999988888888877665544 44566778999998875
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|-..|.++|......+++||+.|.
T Consensus 268 -------~eKNrkl~dLLd~LeFNQVvIFvKsv 293 (387)
T KOG0329|consen 268 -------NEKNRKLNDLLDVLEFNQVVIFVKSV 293 (387)
T ss_pred -------hhhhhhhhhhhhhhhhcceeEeeehh
Confidence 34556666677666667999999875
No 35
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=1.4e-30 Score=251.30 Aligned_cols=202 Identities=33% Similarity=0.584 Sum_probs=183.6
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEE
Q 009212 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (540)
Q Consensus 270 F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aL 349 (540)
|+++++++.+.+.|.++|+..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...++++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------~~~~~~vi 73 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------KKDGPQAL 73 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-------ccCCceEE
Confidence 78899999999999999999999999999999999999999999999999999999999987641 13578999
Q ss_pred EEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCC
Q 009212 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (540)
Q Consensus 350 IL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEa 429 (540)
|++|+++|+.|+.+.++.+... .++.+..++|+.........+..+++|+|+||+.|.+++.+....+.+++++|+||+
T Consensus 74 ii~p~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~ 152 (203)
T cd00268 74 ILAPTRELALQIAEVARKLGKH-TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEA 152 (203)
T ss_pred EEcCCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeCh
Confidence 9999999999999999998764 568889999999887777777778999999999999999888888899999999999
Q ss_pred cccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEE
Q 009212 430 DILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (540)
Q Consensus 430 d~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i 480 (540)
|.+. +.++...+..++..++..+|++++|||+++.+..++..++.++..+
T Consensus 153 h~~~-~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 153 DRML-DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHhh-ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9998 7889999999999999899999999999999999888888877654
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=1.9e-30 Score=295.26 Aligned_cols=247 Identities=20% Similarity=0.222 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcc
Q 009212 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (540)
Q Consensus 274 ~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~P 353 (540)
.|++.+.++|.++||.+||++|.++||.++.|+|+++++|||||||+||++|+++.+... .++++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~----------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD----------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC----------CCcEEEEEcC
Confidence 378999999999999999999999999999999999999999999999999999998642 3578999999
Q ss_pred CHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc----cccCCCccEEEEeCC
Q 009212 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRCAILDEV 429 (540)
Q Consensus 354 treLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~----~~~l~~i~~LVlDEa 429 (540)
|||||.|+++.++.++. .++++..+.|+.... +...+..+++|||+||++|...+... ...++++++||||||
T Consensus 90 traLa~q~~~~l~~l~~--~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 90 TKALAADQLRAVRELTL--RGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred hHHHHHHHHHHHHHhcc--CCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 99999999999999972 467888888887654 44566677999999999987533211 123789999999999
Q ss_pred cccCCCCCHHHHHHHHH-------HhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCC
Q 009212 430 DILFNDEDFEVALQSLI-------SSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGD 502 (540)
Q Consensus 430 d~ll~d~~f~~~i~~Il-------~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~ 502 (540)
|.|. + .|...+..++ ...+.++|++++|||+++.. +++..++..+..++.... . +....++++..+..
T Consensus 167 h~~~-g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i~~~~-~-~~~~~~~~~~~p~~ 241 (742)
T TIGR03817 167 HSYR-G-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAVTEDG-S-PRGARTVALWEPPL 241 (742)
T ss_pred hhcc-C-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEECCCC-C-CcCceEEEEecCCc
Confidence 9997 4 3555444333 33466799999999998775 355666666655443221 1 12223333322210
Q ss_pred CCCC---Cc--hhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 503 QESD---KT--PETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 503 ~~~~---~~--~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
.... .. .......+...|..++.. ..++|||||||.
T Consensus 242 ~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~ 282 (742)
T TIGR03817 242 TELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRR 282 (742)
T ss_pred cccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHH
Confidence 0000 00 011123566677777765 368999999973
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=274.19 Aligned_cols=250 Identities=27% Similarity=0.374 Sum_probs=194.2
Q ss_pred cccccCCCHH----------HHHHHHHCCCCCCcHHHHHHHHHHH---------cCCcEEEEcCCCCCchhhcHHHHHHH
Q 009212 269 SFKELGCSDY----------MIESLKRQNFLRPSQIQAMAFPPVV---------EGKSCILADQSGSGKTLAYLLPVIQR 329 (540)
Q Consensus 269 ~F~~l~L~~~----------ll~~L~~~gf~~ptpiQ~~aip~il---------~G~dvlv~ApTGSGKTlayllpil~~ 329 (540)
-|+.+++.+. +..+|.++++....|+|...+|.++ .++|+.|.||||||||+||.+||++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 4666665544 4555899999999999999999885 25899999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCC-----CcEEEeCh
Q 009212 330 LRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG-----VDVLIATP 404 (540)
Q Consensus 330 l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~-----~dIlVaTP 404 (540)
+..... ..-+||||+||++|+.|+++.+..++. +.++.++.+.|....+...+.|.+. +||||+||
T Consensus 208 L~~R~v--------~~LRavVivPtr~L~~QV~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 208 LSSRPV--------KRLRAVVIVPTRELALQVYDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred HccCCc--------cceEEEEEeeHHHHHHHHHHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 876532 346899999999999999999999987 5789999999999988888877542 48999999
Q ss_pred HHHHHHHHh-ccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC---------------------------------
Q 009212 405 GRFMFLIKE-GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP--------------------------------- 450 (540)
Q Consensus 405 ~rL~~ll~~-~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~--------------------------------- 450 (540)
|||.++|.+ ..+.|++++||||||||+|+ +..|..-+..++.++.
T Consensus 279 GRLVDHl~~~k~f~Lk~LrfLVIDEADRll-~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~ 357 (620)
T KOG0350|consen 279 GRLVDHLNNTKSFDLKHLRFLVIDEADRLL-DQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL 357 (620)
T ss_pred hHHHHhccCCCCcchhhceEEEechHHHHH-HHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc
Confidence 999999985 67899999999999999999 6666665555554432
Q ss_pred -CCCcEEEEeccCCHHHHHHHHHhCCCceE--EeC--CCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHH
Q 009212 451 -VTAQYLFVTATLPVEIYNKLVEVFPDCKV--VMG--PGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE 525 (540)
Q Consensus 451 -~~~Q~ll~SATlp~~i~~~l~~~l~~~~~--i~~--~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~ 525 (540)
+.-+.++||||+..+-..+..-.+..|.. +.. ......+..+.+.++.+.. ..|.-.+.+++.
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~------------~~kpl~~~~lI~ 425 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP------------KFKPLAVYALIT 425 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc------------ccchHhHHHHHH
Confidence 12368899999853332222223444432 222 1345667778888777765 257778999999
Q ss_pred hCCCCcEEEEecccC
Q 009212 526 KSPVSKTIVFCNKKS 540 (540)
Q Consensus 526 ~~~~~rtIIFcnSr~ 540 (540)
..+..++|+|+||.+
T Consensus 426 ~~k~~r~lcf~~S~~ 440 (620)
T KOG0350|consen 426 SNKLNRTLCFVNSVS 440 (620)
T ss_pred HhhcceEEEEecchH
Confidence 988899999999864
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=7.5e-29 Score=282.72 Aligned_cols=189 Identities=25% Similarity=0.336 Sum_probs=164.5
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
+|+++++++.+.+.|++.||.+|+|+|.++|+. ++.|+|++++||||||||++|.+|+++.+... +.+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-----------~~~ 70 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-----------GGK 70 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-----------CCe
Confidence 588999999999999999999999999999986 78999999999999999999999999887642 468
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+|||+|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..+++++...++++++||+|
T Consensus 71 ~l~l~P~~aLa~q~~~~~~~~~~--~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 71 AVYLVPLKALAEEKYREFKDWEK--LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred EEEEeChHHHHHHHHHHHHHHhh--cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEc
Confidence 99999999999999999988754 46889999998765432 22458999999999999998777778999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD 476 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~ 476 (540)
|+|.+. +.++...++.++..+....|++++|||++.. ..+..|+..
T Consensus 146 E~H~l~-~~~rg~~le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~ 191 (720)
T PRK00254 146 EIHLIG-SYDRGATLEMILTHMLGRAQILGLSATVGNA--EELAEWLNA 191 (720)
T ss_pred CcCccC-CccchHHHHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCC
Confidence 999998 6789999999999998899999999999753 334566643
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=6.1e-29 Score=284.13 Aligned_cols=187 Identities=20% Similarity=0.310 Sum_probs=158.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.|++++|++.++++|++.||.+|+|+|.++++. ++.|+|++++||||||||++|.+|+++.+.. +.+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~------------~~k 69 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR------------GGK 69 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc------------CCc
Confidence 589999999999999999999999999999998 7899999999999999999999999998842 457
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+|||+|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..+++++...+.++++||+|
T Consensus 70 al~i~P~raLa~q~~~~~~~~~~--~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFEE--LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhhc--CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 99999999999999999998765 36889999998765432 22457999999999999998776778899999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhC---CCCCcEEEEeccCCHHHHHHHHHhCC
Q 009212 428 EVDILFNDEDFEVALQSLISSS---PVTAQYLFVTATLPVEIYNKLVEVFP 475 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l---~~~~Q~ll~SATlp~~i~~~l~~~l~ 475 (540)
|+|.+. +.++...++.++..+ ....|++++|||++.. ..+..|+.
T Consensus 145 E~H~l~-d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~ 192 (737)
T PRK02362 145 EVHLID-SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLD 192 (737)
T ss_pred CccccC-CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhC
Confidence 999998 677888877775544 4678999999999752 23445553
No 40
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=261.26 Aligned_cols=260 Identities=27% Similarity=0.361 Sum_probs=208.5
Q ss_pred ccccccc----cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCC
Q 009212 266 SRKSFKE----LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (540)
Q Consensus 266 ~~~~F~~----l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~ 341 (540)
+..+|.+ ....+.+++.+...+|..|+|+|.+++|.++.++|++.|||||||||++|++|++++|..... ..
T Consensus 130 ~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~----~~ 205 (593)
T KOG0344|consen 130 PLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ----EK 205 (593)
T ss_pred ccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc----cc
Confidence 3467776 468899999999999999999999999999999999999999999999999999999976532 12
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHHHhhhc-CCCCceEEEEeCCcch-HHHHHhhcCCCcEEEeChHHHHHHHHhcc--cc
Q 009212 342 TSGSPRVVILAPTAELASQVLSNCRSLSK-CGVPFRSMVVTGGFRQ-KTQLENLQEGVDVLIATPGRFMFLIKEGI--LQ 417 (540)
Q Consensus 342 ~~~~p~aLIL~PtreLa~Qi~~~l~~l~~-~~~~l~v~~l~Gg~~~-~~q~~~l~~~~dIlVaTP~rL~~ll~~~~--~~ 417 (540)
...+-+++|+.|||+||.|++.+++++.. .+..+++......... ..........++|+|+||.++..++..+. +.
T Consensus 206 ~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 206 HKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred CccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccch
Confidence 35678999999999999999999999972 1234444433322111 11112222347999999999999998865 78
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC-CCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEE
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~ 496 (540)
+..|.++|+||+|++++...|..++..|+..+. +...+-+||||++..+.+|+.....+...++..........|.|.+
T Consensus 286 l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQEL 365 (593)
T ss_pred hheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhh
Confidence 999999999999999943389999999988774 4567889999999999999988887776655444445566788988
Q ss_pred EEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 497 v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
+.|..+ ..|+-++.++++..-..++|||+.+.+
T Consensus 366 vF~gse-----------~~K~lA~rq~v~~g~~PP~lIfVQs~e 398 (593)
T KOG0344|consen 366 VFCGSE-----------KGKLLALRQLVASGFKPPVLIFVQSKE 398 (593)
T ss_pred eeeecc-----------hhHHHHHHHHHhccCCCCeEEEEecHH
Confidence 888875 479999999999987789999998753
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=2.9e-27 Score=273.85 Aligned_cols=191 Identities=23% Similarity=0.294 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
|++.+.+.+.+ +|..|||+|+++||.++.|+|++++||||||||+||++|+++.+...... .....++++|||+||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~---~~~~~~~~~LyIsPt 93 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE---GELEDKVYCLYVSPL 93 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc---cCCCCCeEEEEEcCH
Confidence 56666666655 79999999999999999999999999999999999999999998753210 111346889999999
Q ss_pred HHHHHHHHHHHHh-------hh----cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc--cCCCc
Q 009212 355 AELASQVLSNCRS-------LS----KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINL 421 (540)
Q Consensus 355 reLa~Qi~~~l~~-------l~----~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~--~l~~i 421 (540)
|+|+.|+++.+.. +. ....++++.+.+|+....++...+.+.++|+|+||++|..++..... .+.++
T Consensus 94 raLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l 173 (876)
T PRK13767 94 RALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTV 173 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcC
Confidence 9999999886653 22 11126789999999998888777888899999999999888865432 57899
Q ss_pred cEEEEeCCcccCCCCCHH----HHHHHHHHhCCCCCcEEEEeccCCH--HHHHHH
Q 009212 422 RCAILDEVDILFNDEDFE----VALQSLISSSPVTAQYLFVTATLPV--EIYNKL 470 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~f~----~~i~~Il~~l~~~~Q~ll~SATlp~--~i~~~l 470 (540)
++|||||||.|. +..+. ..+.++....+...|++++|||+++ ++..++
T Consensus 174 ~~VVIDE~H~l~-~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L 227 (876)
T PRK13767 174 KWVIVDEIHSLA-ENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFL 227 (876)
T ss_pred CEEEEechhhhc-cCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHh
Confidence 999999999998 44433 4455555555568899999999975 444433
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.5e-27 Score=269.02 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=163.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEE-EccCHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI-LAPTAELASQVLS 363 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~-dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLI-L~PtreLa~Qi~~ 363 (540)
.||. |||||+++||.++.|+ ++++.+|||||||.+|.++++.. .. ....++.|| ++||||||.|+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~---------~~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI---------GAKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc---------cccccceEEEeCchHHHHHHHHH
Confidence 4897 9999999999999998 57778999999999776555522 11 123455665 6699999999999
Q ss_pred HHHhhhcCC----------------------CCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc-----
Q 009212 364 NCRSLSKCG----------------------VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL----- 416 (540)
Q Consensus 364 ~l~~l~~~~----------------------~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~----- 416 (540)
.++++++.. ..+++.+++||.....|+..+..+++|||+|++ ++.++.+
T Consensus 81 ~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~~gYg 156 (844)
T TIGR02621 81 EAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLFSGYG 156 (844)
T ss_pred HHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccccccc
Confidence 999988632 248899999999999999999999999999964 4444443
Q ss_pred -----------cCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC--CC---CCcEEEEeccCCHHHHHHHHHhCCCceEE
Q 009212 417 -----------QLINLRCAILDEVDILFNDEDFEVALQSLISSS--PV---TAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (540)
Q Consensus 417 -----------~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l--~~---~~Q~ll~SATlp~~i~~~l~~~l~~~~~i 480 (540)
.+.++++||||||| + +++|...+..|++.+ +. .+|+++||||+|.++.......+.++..+
T Consensus 157 ~~~~~~pi~ag~L~~v~~LVLDEAD--L-d~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i 233 (844)
T TIGR02621 157 CGFKSRPLHAGFLGQDALIVHDEAH--L-EPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKH 233 (844)
T ss_pred cccccccchhhhhccceEEEEehhh--h-ccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCcee
Confidence 27889999999999 4 689999999999975 33 26999999999988877665555454433
Q ss_pred eCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 481 MGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 481 ~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
...........+.++ +.+... .....++..|..++. ...+++||||||+.
T Consensus 234 ~V~~~~l~a~ki~q~-v~v~~e--------~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~ 283 (844)
T TIGR02621 234 PVLKKRLAAKKIVKL-VPPSDE--------KFLSTMVKELNLLMK-DSGGAILVFCRTVK 283 (844)
T ss_pred ecccccccccceEEE-EecChH--------HHHHHHHHHHHHHHh-hCCCcEEEEECCHH
Confidence 322233334455554 333221 011123333333333 34578999999973
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=2.2e-27 Score=266.43 Aligned_cols=249 Identities=21% Similarity=0.262 Sum_probs=190.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
|++.+.+.++.. |..|||.|.+|||.+..|+|++++||||||||+|+.||++..+.+.. ......+..||||+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~----~~~~~~~i~~lYIsPL 82 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG----KGKLEDGIYALYISPL 82 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc----CCCCCCceEEEEeCcH
Confidence 688999999988 99999999999999999999999999999999999999999998762 1233457899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc--ccCCCccEEEEeCCccc
Q 009212 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEVDIL 432 (540)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~--~~l~~i~~LVlDEad~l 432 (540)
|+|.+++...++..+.. .++.+.+-+|+++..+..+...+.+||+|+||+.|.-++.... -.|.+++++||||+|.+
T Consensus 83 kALn~Di~~rL~~~~~~-~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel 161 (814)
T COG1201 83 KALNNDIRRRLEEPLRE-LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHAL 161 (814)
T ss_pred HHHHHHHHHHHHHHHHH-cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhh
Confidence 99999999999998874 7788899999999999888899999999999999988886533 35889999999999999
Q ss_pred CCC---CCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC---ceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 433 FND---EDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD---CKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 433 l~d---~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~---~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
.+. .+..-.++++....+ ..|.|++|||+.+.. .+.+|+.. ...++.... ....+..++....+....
T Consensus 162 ~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~--~varfL~g~~~~~~Iv~~~~---~k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 162 AESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPE--EVAKFLVGFGDPCEIVDVSA---AKKLEIKVISPVEDLIYD 235 (814)
T ss_pred hccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHH--HHHHHhcCCCCceEEEEccc---CCcceEEEEecCCccccc
Confidence 842 235566777777777 899999999995331 24445422 223332211 222333333322210000
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
......-+..+.++++++. .+|||+|||.
T Consensus 236 ---~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~ 264 (814)
T COG1201 236 ---EELWAALYERIAELVKKHR--TTLIFTNTRS 264 (814)
T ss_pred ---cchhHHHHHHHHHHHhhcC--cEEEEEeChH
Confidence 1122456677788888874 7999999984
No 44
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=8.4e-27 Score=274.44 Aligned_cols=224 Identities=17% Similarity=0.173 Sum_probs=167.1
Q ss_pred HHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH
Q 009212 282 SLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (540)
Q Consensus 282 ~L~~~-gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q 360 (540)
.+++. |+ +|+++|++++|.++.|+|++++||||+|||+ |.++++..+.. .++++|||+|||+||.|
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-----------~g~~alIL~PTreLa~Q 138 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-----------KGKKSYIIFPTRLLVEQ 138 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeccHHHHHH
Confidence 34443 77 8999999999999999999999999999996 55665554422 26789999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcc-----hHHHHHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCC
Q 009212 361 VLSNCRSLSKCGVPFRSMVVTGGFR-----QKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (540)
Q Consensus 361 i~~~l~~l~~~~~~l~v~~l~Gg~~-----~~~q~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~ 434 (540)
+++.++.++.. .++.+..++|+.. ...+...+.+ .++|+|+||++|.+++. .+....+++|||||||+|++
T Consensus 139 i~~~l~~l~~~-~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~ 215 (1176)
T PRK09401 139 VVEKLEKFGEK-VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLK 215 (1176)
T ss_pred HHHHHHHHhhh-cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhh
Confidence 99999999874 5677777777654 2333444543 58999999999998876 45566799999999999983
Q ss_pred ----------CCCHH-HHHHHHHHhCCC------------------------CCcEEEEeccCCHH-HHHHHHHhCCCce
Q 009212 435 ----------DEDFE-VALQSLISSSPV------------------------TAQYLFVTATLPVE-IYNKLVEVFPDCK 478 (540)
Q Consensus 435 ----------d~~f~-~~i~~Il~~l~~------------------------~~Q~ll~SATlp~~-i~~~l~~~l~~~~ 478 (540)
.+||. +.+..++..++. .+|+++||||+++. +...+ +.+..
T Consensus 216 ~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l---~~~ll 292 (1176)
T PRK09401 216 SSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKL---FRELL 292 (1176)
T ss_pred cccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHH---hhccc
Confidence 16784 678888877764 68999999999864 43222 22222
Q ss_pred EEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 479 VVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 479 ~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.+..........+|.|.++.+. .|...|..+++... .++||||||+
T Consensus 293 ~~~v~~~~~~~rnI~~~yi~~~--------------~k~~~L~~ll~~l~-~~~LIFv~t~ 338 (1176)
T PRK09401 293 GFEVGSPVFYLRNIVDSYIVDE--------------DSVEKLVELVKRLG-DGGLIFVPSD 338 (1176)
T ss_pred eEEecCcccccCCceEEEEEcc--------------cHHHHHHHHHHhcC-CCEEEEEecc
Confidence 2222223345567888888654 25667778887664 5899999986
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=99.95 E-value=1e-26 Score=263.56 Aligned_cols=187 Identities=21% Similarity=0.301 Sum_probs=156.8
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~a 348 (540)
.|++++|++.+++.+...+|. ++++|.++++.+..|+|++++||||||||++|.++++..+.. +.++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------------~~k~ 68 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------------GLKS 68 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------------CCcE
Confidence 588999999999999999996 999999999999999999999999999999999999987743 3579
Q ss_pred EEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 349 LIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
||++|+++||.|+++.++++.. .++++...+|+...... +...++|+|+||+++..++++....+.++++||+||
T Consensus 69 v~i~P~raLa~q~~~~~~~l~~--~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDE 143 (674)
T PRK01172 69 IYIVPLRSLAMEKYEELSRLRS--LGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADE 143 (674)
T ss_pred EEEechHHHHHHHHHHHHHHhh--cCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEec
Confidence 9999999999999999998754 46788888888754332 224579999999999999988777789999999999
Q ss_pred CcccCCCCCHHHHHHHHHH---hCCCCCcEEEEeccCCHHHHHHHHHhCCC
Q 009212 429 VDILFNDEDFEVALQSLIS---SSPVTAQYLFVTATLPVEIYNKLVEVFPD 476 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~---~l~~~~Q~ll~SATlp~~i~~~l~~~l~~ 476 (540)
||++. +.++...++.++. .++...|++++|||++.. ..+.+|+..
T Consensus 144 aH~l~-d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~ 191 (674)
T PRK01172 144 IHIIG-DEDRGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNA 191 (674)
T ss_pred chhcc-CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCC
Confidence 99998 6777777777654 345678999999999753 335566643
No 46
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=1.9e-25 Score=268.30 Aligned_cols=233 Identities=15% Similarity=0.174 Sum_probs=170.5
Q ss_pred HHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 277 DYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 277 ~~ll~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
.++.+.+++ .|| .|+++|+++||.++.|+|++++||||+|||++++++++.... .+.++|||+||+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------------~g~~aLVl~PTr 132 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------------KGKKCYIILPTT 132 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------------cCCeEEEEECHH
Confidence 345556666 699 699999999999999999999999999999976666554321 356899999999
Q ss_pred HHHHHHHHHHHhhhcC-CCCceEEEEeCCcchHHHH---HhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEEeCCc
Q 009212 356 ELASQVLSNCRSLSKC-GVPFRSMVVTGGFRQKTQL---ENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430 (540)
Q Consensus 356 eLa~Qi~~~l~~l~~~-~~~l~v~~l~Gg~~~~~q~---~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad 430 (540)
+|+.|+++.++.++.. +.++++..++|+....++. ..+.+ .++|||+||++|.+.+... . ...+++|||||||
T Consensus 133 eLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD 210 (1638)
T PRK14701 133 LLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVD 210 (1638)
T ss_pred HHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECce
Confidence 9999999999998763 2457788889998877653 34444 4899999999998876542 2 2679999999999
Q ss_pred ccCC----------CCCHHHHHHH----HHH----------------------hCCCCCc-EEEEeccCCHHHHHHHHHh
Q 009212 431 ILFN----------DEDFEVALQS----LIS----------------------SSPVTAQ-YLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 431 ~ll~----------d~~f~~~i~~----Il~----------------------~l~~~~Q-~ll~SATlp~~i~~~l~~~ 473 (540)
+|++ .++|.+.+.. |+. .++..+| ++++|||+++. ..+...
T Consensus 211 ~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l 288 (1638)
T PRK14701 211 AFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKL 288 (1638)
T ss_pred eccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHH
Confidence 9983 1588877764 332 2345566 67799999853 112233
Q ss_pred CCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 474 l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
+.++..+..........++.|.++.+.. ..+ ..|..+++.. ..++||||+|+.
T Consensus 289 ~~~~l~f~v~~~~~~lr~i~~~yi~~~~------------~~k-~~L~~ll~~~-g~~gIVF~~t~~ 341 (1638)
T PRK14701 289 YRELLGFEVGSGRSALRNIVDVYLNPEK------------IIK-EHVRELLKKL-GKGGLIFVPIDE 341 (1638)
T ss_pred hhcCeEEEecCCCCCCCCcEEEEEECCH------------HHH-HHHHHHHHhC-CCCeEEEEeccc
Confidence 4454444444445566778888887643 123 4677888776 468999999863
No 47
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=8.8e-26 Score=210.50 Aligned_cols=165 Identities=32% Similarity=0.541 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcC
Q 009212 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (540)
Q Consensus 292 tpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~ 371 (540)
||+|.++|+.+..|+|+++.||||+|||++|++|+++.+... ...++||++|+++|+.|+++.+..++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~----------~~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG----------KDARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT----------SSSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC----------CCceEEEEeecccccccccccccccccc
Confidence 799999999999999999999999999999999999988653 2348999999999999999999999874
Q ss_pred CCCceEEEEeCCcchH-HHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC
Q 009212 372 GVPFRSMVVTGGFRQK-TQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (540)
Q Consensus 372 ~~~l~v~~l~Gg~~~~-~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~ 450 (540)
..+++..++|+.... .....+..+++|+|+||++|.+++..+...+.++++||+||+|.+. +..+...+..|+..+.
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~-~~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 71 -TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS-DETFRAMLKSILRRLK 148 (169)
T ss_dssp -TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH-HTTHHHHHHHHHHHSH
T ss_pred -cccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccc-cccHHHHHHHHHHHhc
Confidence 568899999988765 4445555679999999999999998865577789999999999998 5588889999988873
Q ss_pred C--CCcEEEEeccCCHHHHH
Q 009212 451 V--TAQYLFVTATLPVEIYN 468 (540)
Q Consensus 451 ~--~~Q~ll~SATlp~~i~~ 468 (540)
. ..|++++|||+++.+.+
T Consensus 149 ~~~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNVEK 168 (169)
T ss_dssp TTTTSEEEEEESSSTHHHHH
T ss_pred CCCCCcEEEEeeCCChhHhh
Confidence 3 58999999999966643
No 48
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.5e-25 Score=242.21 Aligned_cols=217 Identities=15% Similarity=0.222 Sum_probs=155.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|++..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~---------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS---------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc---------------CCcEEEEecHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999998742 336999999999999998888
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHH---hh-cCCCcEEEeChHHHHHHH-Hhccc-cCCCccEEEEeCCcccCCCCC--
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLE---NL-QEGVDVLIATPGRFMFLI-KEGIL-QLINLRCAILDEVDILFNDED-- 437 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~---~l-~~~~dIlVaTP~rL~~ll-~~~~~-~l~~i~~LVlDEad~ll~d~~-- 437 (540)
..+ ++.+..+.++....++.. .+ ...++|+++||+++.... ....+ .+..+++|||||||+++ +++
T Consensus 72 ~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~-~~g~~ 145 (470)
T TIGR00614 72 KAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS-QWGHD 145 (470)
T ss_pred HHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC-ccccc
Confidence 765 356677777766543322 22 234899999999986322 11122 56789999999999998 554
Q ss_pred HHHHHHHH---HHhCCCCCcEEEEeccCCHHHHHHHHHhC--CCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhH
Q 009212 438 FEVALQSL---ISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (540)
Q Consensus 438 f~~~i~~I---l~~l~~~~Q~ll~SATlp~~i~~~l~~~l--~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~ 512 (540)
|.+.+..| ...+ +..|++++|||+++.+...+...+ .++.++... ...+++...+....
T Consensus 146 fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v~~~~------------ 209 (470)
T TIGR00614 146 FRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEVRRKT------------ 209 (470)
T ss_pred cHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEEEeCC------------
Confidence 67766554 3444 478999999999999888887776 344444322 12233433322211
Q ss_pred hhhHHHHHHHHHH-hCCCCcEEEEecccC
Q 009212 513 FLNKKSALLQLIE-KSPVSKTIVFCNKKS 540 (540)
Q Consensus 513 ~~~K~~~L~~ll~-~~~~~rtIIFcnSr~ 540 (540)
...+..|..++. .....++||||+|++
T Consensus 210 -~~~~~~l~~~l~~~~~~~~~IIF~~s~~ 237 (470)
T TIGR00614 210 -PKILEDLLRFIRKEFKGKSGIIYCPSRK 237 (470)
T ss_pred -ccHHHHHHHHHHHhcCCCceEEEECcHH
Confidence 124555666665 445567799999973
No 49
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=3.5e-25 Score=253.52 Aligned_cols=236 Identities=18% Similarity=0.217 Sum_probs=167.8
Q ss_pred ccccccC--CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCC
Q 009212 268 KSFKELG--CSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (540)
Q Consensus 268 ~~F~~l~--L~~~ll~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~ 344 (540)
..|...+ ....+...+++ +||..++|+|.++|++++.|+|+++++|||+|||+||++|++..
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 4566544 44566666665 59999999999999999999999999999999999999999842
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc------CCCcEEEeChHHHHH---HHHh--
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ------EGVDVLIATPGRFMF---LIKE-- 413 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~------~~~dIlVaTP~rL~~---ll~~-- 413 (540)
...+|||+|+++|+.++...+..+ ++....+.++....++...+. ..++||++||++|.. ++..
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~ 574 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLE 574 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHH
Confidence 236999999999998665555443 578888899888776654443 358999999999862 2221
Q ss_pred ccccCCCccEEEEeCCcccCCCCC--HHHHHHHH--HHhCCCCCcEEEEeccCCHHHHHHHHHhCC--CceEEeCCCccc
Q 009212 414 GILQLINLRCAILDEVDILFNDED--FEVALQSL--ISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHR 487 (540)
Q Consensus 414 ~~~~l~~i~~LVlDEad~ll~d~~--f~~~i~~I--l~~l~~~~Q~ll~SATlp~~i~~~l~~~l~--~~~~i~~~~~~~ 487 (540)
.......+.+|||||||+++ +++ |++.++.| +.......|+++||||++..+...+...+. ++.++... .
T Consensus 575 ~L~~~~~LslIVIDEAHcVS-qWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f 650 (1195)
T PLN03137 575 NLNSRGLLARFVIDEAHCVS-QWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---F 650 (1195)
T ss_pred hhhhccccceeccCcchhhh-hcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---c
Confidence 11123458899999999999 565 88877764 333334789999999999999888887764 33333322 2
Q ss_pred cCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhC-CCCcEEEEecccC
Q 009212 488 ISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKKS 540 (540)
Q Consensus 488 ~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~-~~~rtIIFcnSr~ 540 (540)
..+++.+.++ ... ......|..++... ...++||||+||.
T Consensus 651 ~RpNL~y~Vv--~k~-----------kk~le~L~~~I~~~~~~esgIIYC~SRk 691 (1195)
T PLN03137 651 NRPNLWYSVV--PKT-----------KKCLEDIDKFIKENHFDECGIIYCLSRM 691 (1195)
T ss_pred CccceEEEEe--ccc-----------hhHHHHHHHHHHhcccCCCceeEeCchh
Confidence 3344443333 211 12234566666543 3568999999973
No 50
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=1.3e-24 Score=256.13 Aligned_cols=229 Identities=22% Similarity=0.232 Sum_probs=161.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH
Q 009212 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (540)
Q Consensus 277 ~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre 356 (540)
.++.+.+.+.....|+++|+.++|.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+|||+
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----------~g~~vLIL~PTre 132 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----------KGKRCYIILPTTL 132 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----------cCCeEEEEeCHHH
Confidence 34455555544457999999999999999999999999999997 66777665532 2678999999999
Q ss_pred HHHHHHHHHHhhhcCCCCce---EEEEeCCcchHHH---HHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEEeCC
Q 009212 357 LASQVLSNCRSLSKCGVPFR---SMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (540)
Q Consensus 357 La~Qi~~~l~~l~~~~~~l~---v~~l~Gg~~~~~q---~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEa 429 (540)
||.|+++.++.++.. .++. +.+++|+....++ ...+.+ +++|||+||++|.+.+..- .. .++++|||||
T Consensus 133 La~Qi~~~l~~l~~~-~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEa 208 (1171)
T TIGR01054 133 LVIQVAEKISSLAEK-AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDV 208 (1171)
T ss_pred HHHHHHHHHHHHHHh-cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeCh
Confidence 999999999999863 3343 3356788776554 334444 5999999999998877641 12 8999999999
Q ss_pred cccCCC----------CCHHHH-HHHHH----------------------HhCCCCCc--EEEEecc-CCHHHHHHHHHh
Q 009212 430 DILFND----------EDFEVA-LQSLI----------------------SSSPVTAQ--YLFVTAT-LPVEIYNKLVEV 473 (540)
Q Consensus 430 d~ll~d----------~~f~~~-i~~Il----------------------~~l~~~~Q--~ll~SAT-lp~~i~~~l~~~ 473 (540)
|+|++. +||.+. +..++ +.++..+| +++|||| +|..+...+
T Consensus 209 D~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l--- 285 (1171)
T TIGR01054 209 DALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKL--- 285 (1171)
T ss_pred HhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHH---
Confidence 999931 577653 44433 23455555 5678999 676554322
Q ss_pred CCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 474 FPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 474 l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
+.+...+..........++.|.++.+.. +...|..+++... .++||||+|+
T Consensus 286 ~r~ll~~~v~~~~~~~r~I~~~~~~~~~--------------~~~~L~~ll~~l~-~~~IVFv~t~ 336 (1171)
T TIGR01054 286 FRELLGFEVGGGSDTLRNVVDVYVEDED--------------LKETLLEIVKKLG-TGGIVYVSID 336 (1171)
T ss_pred cccccceEecCccccccceEEEEEeccc--------------HHHHHHHHHHHcC-CCEEEEEecc
Confidence 3333323223334455678888775431 2345677776653 6899999986
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=4.4e-24 Score=239.04 Aligned_cols=226 Identities=17% Similarity=0.258 Sum_probs=160.5
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 276 SDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 276 ~~~ll~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
.......|++ +||..|+|+|+++|+.++.|+|+++++|||+|||++|++|++.. ...+|||+|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------------~g~tlVisPl 74 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------------DGLTLVVSPL 74 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------------CCCEEEEecH
Confidence 3334444544 59999999999999999999999999999999999999999842 2359999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh---hc-CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCc
Q 009212 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD 430 (540)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad 430 (540)
++|+.|+.+.++.+ ++.+..+.++.....+... +. ...+|+++||++|........+...++++|||||||
T Consensus 75 ~sL~~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH 149 (607)
T PRK11057 75 ISLMKDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAH 149 (607)
T ss_pred HHHHHHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcc
Confidence 99999999988865 3456666666655443322 22 347899999999873221123345578999999999
Q ss_pred ccCCCCC--HHHHHHHH---HHhCCCCCcEEEEeccCCHHHHHHHHHhC--CCceEEeCCCccccCCCceeEEEEcCCCC
Q 009212 431 ILFNDED--FEVALQSL---ISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (540)
Q Consensus 431 ~ll~d~~--f~~~i~~I---l~~l~~~~Q~ll~SATlp~~i~~~l~~~l--~~~~~i~~~~~~~~~~~I~q~~v~~~~~~ 503 (540)
++. +++ |.+.+..| ...+ +..|++++|||.+..+...+...+ .++.+..... ..+++...++. .
T Consensus 150 ~i~-~~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl~~~v~~--~-- 220 (607)
T PRK11057 150 CIS-QWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNIRYTLVE--K-- 220 (607)
T ss_pred ccc-cccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcceeeeee--c--
Confidence 998 544 66655544 4444 378999999999988877666654 4454443321 23344333322 1
Q ss_pred CCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..+...|..++......++||||+|++
T Consensus 221 ----------~~~~~~l~~~l~~~~~~~~IIFc~tr~ 247 (607)
T PRK11057 221 ----------FKPLDQLMRYVQEQRGKSGIIYCNSRA 247 (607)
T ss_pred ----------cchHHHHHHHHHhcCCCCEEEEECcHH
Confidence 124556777777777789999999973
No 52
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=5.2e-24 Score=238.14 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=163.0
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH
Q 009212 282 SLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (540)
Q Consensus 282 ~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q 360 (540)
.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||+||++|++.. ...+|||+|+++|+.|
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~---------------~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL---------------KGLTVVISPLISLMKD 68 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc---------------CCcEEEEcCCHHHHHH
Confidence 3444 69999999999999999999999999999999999999999742 2358999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh----cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCC
Q 009212 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436 (540)
Q Consensus 361 i~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l----~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~ 436 (540)
++..++.++ +.+..+.++....+....+ ...++|+++||++|........+...++++|||||||++. ++
T Consensus 69 q~~~l~~~g-----i~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~-~~ 142 (591)
T TIGR01389 69 QVDQLRAAG-----VAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS-QW 142 (591)
T ss_pred HHHHHHHcC-----CcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc-cc
Confidence 999888753 5677777777665443322 2458999999999975443345566789999999999998 44
Q ss_pred --CHHHHHHHH---HHhCCCCCcEEEEeccCCHHHHHHHHHhCC--CceEEeCCCccccCCCceeEEEEcCCCCCCCCch
Q 009212 437 --DFEVALQSL---ISSSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTP 509 (540)
Q Consensus 437 --~f~~~i~~I---l~~l~~~~Q~ll~SATlp~~i~~~l~~~l~--~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~ 509 (540)
.|.+.+..+ ...++ ..+++++|||.+..+...+..++. ++..+... ....++...+.. .
T Consensus 143 g~~frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~--~-------- 208 (591)
T TIGR01389 143 GHDFRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNLRFSVVK--K-------- 208 (591)
T ss_pred cCccHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCcEEEEEe--C--------
Confidence 477766655 34444 455999999999999888888773 34333322 222334333322 1
Q ss_pred hhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 510 ETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 510 ~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..+...|..++..+...++||||+|+
T Consensus 209 ----~~~~~~l~~~l~~~~~~~~IIf~~sr 234 (591)
T TIGR01389 209 ----NNKQKFLLDYLKKHRGQSGIIYASSR 234 (591)
T ss_pred ----CCHHHHHHHHHHhcCCCCEEEEECcH
Confidence 13566778888777678999999997
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.91 E-value=1e-23 Score=239.01 Aligned_cols=183 Identities=21% Similarity=0.317 Sum_probs=150.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcc
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~P 353 (540)
+.+.+.+.++..++..+.+-|+.++.. +..++|+|+++|||||||+.+++.+++.+.+. +.++|||||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-----------~~k~vYivP 84 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-----------GGKVVYIVP 84 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-----------CCcEEEEeC
Confidence 677888888888888888888888766 45679999999999999999999999998763 567999999
Q ss_pred CHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 354 treLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
+|+||.|+++.++.+.. .++++...+|+...... . ..+++|||+||+++..++++....+..+++|||||+|.+.
T Consensus 85 lkALa~Ek~~~~~~~~~--~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 85 LKALAEEKYEEFSRLEE--LGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG 159 (766)
T ss_pred hHHHHHHHHHHhhhHHh--cCCEEEEecCCcccchh--h-hccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC
Confidence 99999999999996665 57899999999875542 2 2458999999999999999988889999999999999998
Q ss_pred CCCCHHHHHHHHHHhCC---CCCcEEEEeccCCHHHHHHHHHhCCC
Q 009212 434 NDEDFEVALQSLISSSP---VTAQYLFVTATLPVEIYNKLVEVFPD 476 (540)
Q Consensus 434 ~d~~f~~~i~~Il~~l~---~~~Q~ll~SATlp~~i~~~l~~~l~~ 476 (540)
|....+.++.|+..+. ...|++++|||+|.- ..+..|+.-
T Consensus 160 -d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a 202 (766)
T COG1204 160 -DRTRGPVLESIVARMRRLNELIRIVGLSATLPNA--EEVADWLNA 202 (766)
T ss_pred -CcccCceehhHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCC
Confidence 5556666676665553 347999999999954 235566643
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.91 E-value=1.2e-22 Score=239.04 Aligned_cols=220 Identities=19% Similarity=0.187 Sum_probs=162.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 009212 279 MIESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (540)
Q Consensus 279 ll~~L~~~gf~~ptpiQ~~aip~il~G------~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~ 352 (540)
..+....++| .||++|.++|+.++.+ +|++++|+||+|||++|+.+++..+. .+.+++||+
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------~g~qvlvLv 656 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------NHKQVAVLV 656 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------------cCCeEEEEe
Confidence 3444566788 7999999999999987 89999999999999999988876542 367899999
Q ss_pred cCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 353 PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
||++||.|+++.+++.+.. .++++.+++|+....++...+. ..++|+|+||+.+ . ..+.+.++++|||||
T Consensus 657 PT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 657 PTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDE 730 (1147)
T ss_pred CcHHHHHHHHHHHHHhhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEec
Confidence 9999999999999986542 4678888888887776655442 3589999999643 2 345678999999999
Q ss_pred CcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCc
Q 009212 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~ 508 (540)
+|++. ..+ ...++.++..+|+++||||+++....+....+.++..+..+... ...+++++......
T Consensus 731 ahrfG--~~~----~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~------ 796 (1147)
T PRK10689 731 EHRFG--VRH----KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSL------ 796 (1147)
T ss_pred hhhcc--hhH----HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcH------
Confidence 99973 222 33456677899999999998877777777777787776554322 23355555443210
Q ss_pred hhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 509 ~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..+...+.++.+ .++++||||++
T Consensus 797 -----~~k~~il~el~r---~gqv~vf~n~i 819 (1147)
T PRK10689 797 -----VVREAILREILR---GGQVYYLYNDV 819 (1147)
T ss_pred -----HHHHHHHHHHhc---CCeEEEEECCH
Confidence 123333444443 46899999985
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=2.3e-22 Score=232.22 Aligned_cols=225 Identities=16% Similarity=0.152 Sum_probs=159.4
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 275 CSDYMIESLKR-QNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 275 L~~~ll~~L~~-~gf~~ptpiQ~~aip~il~G------~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
....+...+.+ .+| .||++|.+||+.++.+ +|++++|+||||||++|++|++..+.. +.+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------------g~q 502 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------------GKQ 502 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------------CCe
Confidence 34555555554 588 5999999999999875 799999999999999999999887743 468
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHhhcC-CCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q---~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
++||+||++||.|+++.+++++.. .++++..++|+....++ ...+.. .++|||+||.. + .+.+.+.++++
T Consensus 503 vlvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~l 576 (926)
T TIGR00580 503 VAVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGL 576 (926)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCE
Confidence 999999999999999999997763 57888888887765443 334444 48999999942 3 34567899999
Q ss_pred EEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCC
Q 009212 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (540)
Q Consensus 424 LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~ 503 (540)
|||||+|++. .. ....+..++...|+++||||+.+.........+.++..+..+... ...+++++.....
T Consensus 577 lVIDEahrfg--v~----~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~-- 646 (926)
T TIGR00580 577 LIIDEEQRFG--VK----QKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP-- 646 (926)
T ss_pred EEeecccccc--hh----HHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH--
Confidence 9999999964 22 234455567789999999998766555544455666665544322 2235555543221
Q ss_pred CCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
......+..-+. ..++++||||+++
T Consensus 647 ----------~~i~~~i~~el~--~g~qv~if~n~i~ 671 (926)
T TIGR00580 647 ----------ELVREAIRRELL--RGGQVFYVHNRIE 671 (926)
T ss_pred ----------HHHHHHHHHHHH--cCCeEEEEECCcH
Confidence 111122222222 3468999999863
No 56
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=1.1e-22 Score=241.24 Aligned_cols=171 Identities=22% Similarity=0.302 Sum_probs=131.2
Q ss_pred EEcCCCCCchhhcHHHHHHHHHHHHhhcc-CCCCCCCCEEEEEccCHHHHHHHHHHHHh----h-------hcCCCCceE
Q 009212 310 LADQSGSGKTLAYLLPVIQRLRQEELQGL-SKSTSGSPRVVILAPTAELASQVLSNCRS----L-------SKCGVPFRS 377 (540)
Q Consensus 310 v~ApTGSGKTlayllpil~~l~~~~~~~~-~~~~~~~p~aLIL~PtreLa~Qi~~~l~~----l-------~~~~~~l~v 377 (540)
|+||||||||+||+||+++.+........ ......+.++|||+|+|+|+.|+++.++. + +....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999999999876421100 00113468999999999999999998875 2 112246899
Q ss_pred EEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-cccCCCccEEEEeCCcccCCC---CCHHHHHHHHHHhCCCCC
Q 009212 378 MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAILDEVDILFND---EDFEVALQSLISSSPVTA 453 (540)
Q Consensus 378 ~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~LVlDEad~ll~d---~~f~~~i~~Il~~l~~~~ 453 (540)
...+|++...++.+.+.+.+||||+||++|..++.++ ...++++++|||||+|.|++. ..+...+.+|...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999998887777788999999999999987654 346899999999999999942 136677888888888889
Q ss_pred cEEEEeccCCHHHHHHHHHhCC--CceEEeC
Q 009212 454 QYLFVTATLPVEIYNKLVEVFP--DCKVVMG 482 (540)
Q Consensus 454 Q~ll~SATlp~~i~~~l~~~l~--~~~~i~~ 482 (540)
|+|+||||+++. +.+.+++. .+..++.
T Consensus 161 QrIgLSATI~n~--eevA~~L~g~~pv~Iv~ 189 (1490)
T PRK09751 161 QRIGLSATVRSA--SDVAAFLGGDRPVTVVN 189 (1490)
T ss_pred eEEEEEeeCCCH--HHHHHHhcCCCCEEEEC
Confidence 999999999863 23556663 2444443
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=5.5e-22 Score=224.75 Aligned_cols=166 Identities=22% Similarity=0.279 Sum_probs=130.1
Q ss_pred HHHHHH-HHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEE
Q 009212 277 DYMIES-LKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVV 349 (540)
Q Consensus 277 ~~ll~~-L~~~gf~~ptpiQ~~aip~il~G------~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aL 349 (540)
..+++. +..++| +||++|+++|+.+..+ .|++++|+||||||++|++|++..+. .+.+++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------------~g~q~l 314 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------------AGYQAA 314 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEE
Confidence 344444 445688 6999999999999887 48999999999999999999998763 267899
Q ss_pred EEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH---HHHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEE
Q 009212 350 ILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT---QLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (540)
Q Consensus 350 IL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~---q~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LV 425 (540)
||+||++||.|+++.+++++.. .++++.+++|+....+ +...+.. .++|+|+||+.+. ..+.+.+++++|
T Consensus 315 ilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvV 388 (681)
T PRK10917 315 LMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVI 388 (681)
T ss_pred EEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEE
Confidence 9999999999999999998863 5789999999987543 3444444 4999999998773 345678999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
|||+|++. ... ...+......+++++||||..+...
T Consensus 389 IDE~Hrfg--~~q----r~~l~~~~~~~~iL~~SATp~prtl 424 (681)
T PRK10917 389 IDEQHRFG--VEQ----RLALREKGENPHVLVMTATPIPRTL 424 (681)
T ss_pred Eechhhhh--HHH----HHHHHhcCCCCCEEEEeCCCCHHHH
Confidence 99999874 222 2223334557899999999765543
No 58
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.89 E-value=6.6e-22 Score=226.98 Aligned_cols=250 Identities=22% Similarity=0.248 Sum_probs=177.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 276 ~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
...+..+|.+.|...++.+|.+|+..+.+|+|+||+++||||||++|++||++++.+.. ..++|+|.||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~----------~a~AL~lYPtn 125 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP----------SARALLLYPTN 125 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc----------CccEEEEechh
Confidence 34457778888888999999999999999999999999999999999999999998753 33799999999
Q ss_pred HHHHHHHHHHHhhhcCCC-CceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc----cccCCCccEEEEeCCc
Q 009212 356 ELASQVLSNCRSLSKCGV-PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRCAILDEVD 430 (540)
Q Consensus 356 eLa~Qi~~~l~~l~~~~~-~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~----~~~l~~i~~LVlDEad 430 (540)
+||+.+.+.++++..... .+.+...+|++...+....+.+.++||++||++|..++.+. ...+.+++|||+||+|
T Consensus 126 ALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 126 ALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 999999999999876422 58888999999888776777888999999999999855432 2347789999999999
Q ss_pred ccCCCC--CHHHHHHHHHHhC---CCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCC
Q 009212 431 ILFNDE--DFEVALQSLISSS---PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (540)
Q Consensus 431 ~ll~d~--~f~~~i~~Il~~l---~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~ 505 (540)
.+-+-. ...-.+++++..+ +...|+|+.|||+...- ++....+......... ....+...+++++.-+.....
T Consensus 206 tYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~-e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~ 283 (851)
T COG1205 206 TYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPG-EFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIREL 283 (851)
T ss_pred eccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChH-HHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhh
Confidence 986311 2444455554443 45789999999996443 3455555544443222 223334445555544321000
Q ss_pred CCchhhHhhhHHHHHHHHHHhC--CCCcEEEEecccC
Q 009212 506 DKTPETAFLNKKSALLQLIEKS--PVSKTIVFCNKKS 540 (540)
Q Consensus 506 ~~~~~~~~~~K~~~L~~ll~~~--~~~rtIIFcnSr~ 540 (540)
. ......+...+..+.... ..-++|+||.|+.
T Consensus 284 -~--~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~ 317 (851)
T COG1205 284 -A--ESIRRSALAELATLAALLVRNGIQTLVFFRSRK 317 (851)
T ss_pred -h--hhcccchHHHHHHHHHHHHHcCceEEEEEehhh
Confidence 0 000112333344443332 3468999999873
No 59
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.89 E-value=2.5e-23 Score=213.40 Aligned_cols=194 Identities=24% Similarity=0.381 Sum_probs=141.8
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcC--CCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCcc
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLR 422 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~--~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~ 422 (540)
.|.+||+-|+|||++|++++++++..+ ++.++..++.||...+.|...+.++.||+|+||+|+++++..+.+.+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 477999999999999999988887542 456788899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccCCCCCHHHHHHHHHHhCCC------CCcEEEEeccCCH-HHHHHHHHhCCCceEEeCCCccccCCCceeE
Q 009212 423 CAILDEVDILFNDEDFEVALQSLISSSPV------TAQYLFVTATLPV-EIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495 (540)
Q Consensus 423 ~LVlDEad~ll~d~~f~~~i~~Il~~l~~------~~Q~ll~SATlp~-~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~ 495 (540)
+||+||+|.++ ..++.+.|.++..++|. ..|.+++|||+.. ++...-.+.+.-+..+....+...+..++++
T Consensus 366 FlvlDead~lL-~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 366 FLVLDEADLLL-GQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEecchhhhh-hcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999999 67899999998877763 5799999999852 2222222333334444444455555556665
Q ss_pred EEEcCCCC--------------------CC---CCchh----hHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 496 LVDCSGDQ--------------------ES---DKTPE----TAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 496 ~v~~~~~~--------------------~~---~~~~~----~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
+..+...- +. +..++ +....|-+.-+..++.+.+.++||||.|+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk 515 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTK 515 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEecc
Confidence 55443210 00 01111 11112223334556677899999999885
No 60
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=2.5e-22 Score=223.87 Aligned_cols=242 Identities=15% Similarity=0.264 Sum_probs=172.4
Q ss_pred CCCCCCcHHHHHHHHHHH-cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il-~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
++|.+++.+|..++|.+. +..|+|||||||||||..|+|.|++.+.+..- .........++|||+|+++||.++++.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~--~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEE--QGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhcc--ccccccCCceEEEEechHHHHHHHHHH
Confidence 478899999999999987 46799999999999999999999999986321 122345688999999999999999988
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc---ccCCCccEEEEeCCcccCCCCCHHHH
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI---LQLINLRCAILDEVDILFNDEDFEVA 441 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~---~~l~~i~~LVlDEad~ll~d~~f~~~ 441 (540)
+.+-... .++.+..++|++.....- -..++|||+||+++.-..++.. ..++.|++|||||+|.+.+ ...+.
T Consensus 184 ~~kkl~~-~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd--~RGpv 257 (1230)
T KOG0952|consen 184 FSKKLAP-LGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD--DRGPV 257 (1230)
T ss_pred Hhhhccc-ccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC--cccch
Confidence 8664432 578999999998765432 1348999999999865555432 2466799999999999873 45566
Q ss_pred HHHHHHhC-------CCCCcEEEEeccCCHHHHHHHHHhCCC--ceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhH
Q 009212 442 LQSLISSS-------PVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (540)
Q Consensus 442 i~~Il~~l-------~~~~Q~ll~SATlp~~i~~~l~~~l~~--~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~ 512 (540)
++.|+.++ ....+++++|||+|.- ..+..|++- +..++......-+..+.+.++.++... ..-.....
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~-~~~~~~~~ 334 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKK-NRQQKKNI 334 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeeccc-chhhhhhH
Confidence 66665543 3567999999999954 235556543 344444444455556788888877641 11111112
Q ss_pred hhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 513 FLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 513 ~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
.....+.+.+.+... .+++|||.+|.
T Consensus 335 d~~~~~kv~e~~~~g--~qVlvFvhsR~ 360 (1230)
T KOG0952|consen 335 DEVCYDKVVEFLQEG--HQVLVFVHSRN 360 (1230)
T ss_pred HHHHHHHHHHHHHcC--CeEEEEEecCh
Confidence 223444455555543 68999999974
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=1.9e-21 Score=218.78 Aligned_cols=164 Identities=21% Similarity=0.287 Sum_probs=128.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEE
Q 009212 278 YMIESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (540)
Q Consensus 278 ~ll~~L~~~gf~~ptpiQ~~aip~il~G------~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL 351 (540)
.+.+.+...+| .||++|+++|+.++.+ .+.+++|+||||||++|++|++..+. .+.+++|+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------~g~qvlil 290 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------AGYQVALM 290 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------------cCCcEEEE
Confidence 34455677799 7999999999999876 36899999999999999999998764 25689999
Q ss_pred ccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH---HHHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT---QLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 352 ~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~---q~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+||++||.|+++.+++++.. .++++.+++|+....+ +...+.. .++|+|+||+.+. ....+.++.++|||
T Consensus 291 aPT~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-----~~~~~~~l~lvVID 364 (630)
T TIGR00643 291 APTEILAEQHYNSLRNLLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-----EKVEFKRLALVIID 364 (630)
T ss_pred CCHHHHHHHHHHHHHHHhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-----ccccccccceEEEe
Confidence 99999999999999998763 5789999999987655 3334443 4899999998764 24567899999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCC--CCCcEEEEeccCCHH
Q 009212 428 EVDILFNDEDFEVALQSLISSSP--VTAQYLFVTATLPVE 465 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~--~~~Q~ll~SATlp~~ 465 (540)
|+|++. . .... .+..... ..+|++++|||..+.
T Consensus 365 EaH~fg-~-~qr~---~l~~~~~~~~~~~~l~~SATp~pr 399 (630)
T TIGR00643 365 EQHRFG-V-EQRK---KLREKGQGGFTPHVLVMSATPIPR 399 (630)
T ss_pred chhhcc-H-HHHH---HHHHhcccCCCCCEEEEeCCCCcH
Confidence 999875 2 2222 2222222 268999999997544
No 62
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.87 E-value=2.2e-21 Score=205.25 Aligned_cols=241 Identities=24% Similarity=0.318 Sum_probs=182.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
...++.+++++.+-|+..|++.+.|+|.-++.. ++.|.|.+|+++|+||||+..-++-+.+++.. +.+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-----------g~K 263 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-----------GKK 263 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-----------CCe
Confidence 467899999999999999999999999999988 88999999999999999999999998888753 668
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH----hhcCCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE----NLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~----~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
.|+|+|..+||+|-+..++.-... .++.+.+-+|-...+.... .....+||||+|.+.+..+|+.+ -.+.+|..
T Consensus 264 mlfLvPLVALANQKy~dF~~rYs~-LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGt 341 (830)
T COG1202 264 MLFLVPLVALANQKYEDFKERYSK-LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGT 341 (830)
T ss_pred EEEEehhHHhhcchHHHHHHHhhc-ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccccce
Confidence 999999999999999999874432 5667766666655443311 11235899999999999999887 67899999
Q ss_pred EEEeCCcccCCCCCHHHHHHHHHH---hCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcC
Q 009212 424 AILDEVDILFNDEDFEVALQSLIS---SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (540)
Q Consensus 424 LVlDEad~ll~d~~f~~~i~~Il~---~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~ 500 (540)
+||||+|.+- |....+.+.-++. .+-+..|+|.+|||+-+.- -+.+.+.--.+.+. .-+-.++.+++.+.
T Consensus 342 VVIDEiHtL~-deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~--elA~~l~a~lV~y~----~RPVplErHlvf~~ 414 (830)
T COG1202 342 VVIDEIHTLE-DEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE--ELAKKLGAKLVLYD----ERPVPLERHLVFAR 414 (830)
T ss_pred EEeeeeeecc-chhcccchhhHHHHHHHhCCCCeEEEEEeecCChH--HHHHHhCCeeEeec----CCCCChhHeeeeec
Confidence 9999999887 5555554444433 3334899999999994331 13444443333322 22334666777776
Q ss_pred CCCCCCCchhhHhhhHHHHHHHHHHh--------CCCCcEEEEecccC
Q 009212 501 GDQESDKTPETAFLNKKSALLQLIEK--------SPVSKTIVFCNKKS 540 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~ll~~--------~~~~rtIIFcnSr~ 540 (540)
+. ..|...+..+.+. ...+|||||+|||.
T Consensus 415 ~e-----------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRr 451 (830)
T COG1202 415 NE-----------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRR 451 (830)
T ss_pred Cc-----------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchh
Confidence 53 4688888777754 23579999999983
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.86 E-value=1.1e-20 Score=211.65 Aligned_cols=225 Identities=18% Similarity=0.147 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCchhh---------cHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 293 QIQAMAFPPVVEGKSCILADQSGSGKTLA---------YLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 293 piQ~~aip~il~G~dvlv~ApTGSGKTla---------yllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
.+|+++++.++.|+++|++|+||||||.+ |++|.+..+..-. ......+++|++||||||.|+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~------~~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID------PNFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc------cccCCcEEEEECcHHHHHHHHHH
Confidence 47999999999999999999999999997 5555555443210 11235689999999999999999
Q ss_pred HHHhhhcC--CCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHH
Q 009212 364 NCRSLSKC--GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVA 441 (540)
Q Consensus 364 ~l~~l~~~--~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~ 441 (540)
.+.+...+ ..+..+.+.+||... .+.....++.+|+|+|++. ....+.++++|||||||.+. .++ +.
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~-~~~--Dl 309 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHD-QIG--DI 309 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCc-cch--hH
Confidence 98876543 134677888999873 2223333467999999762 12357889999999999997 433 45
Q ss_pred HHHHHHhC-CCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHH
Q 009212 442 LQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSAL 520 (540)
Q Consensus 442 i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L 520 (540)
+..+++.. +..+|+++||||++.++.. +.+++.++..+..+. .....++++++....... .........+...+
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~--~~~~y~~~~k~~~l 384 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPK--NKRAYIEEEKKNIV 384 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHhcCCcEEEeCC--CcCCCeEEEEeecCcccc--cchhhhHHHHHHHH
Confidence 55555544 3446999999999988765 478888877665442 234567887775432100 00111112232233
Q ss_pred HHHHHh--CCCCcEEEEeccc
Q 009212 521 LQLIEK--SPVSKTIVFCNKK 539 (540)
Q Consensus 521 ~~ll~~--~~~~rtIIFcnSr 539 (540)
..+... ...+++||||+++
T Consensus 385 ~~L~~~~~~~~g~iLVFlpg~ 405 (675)
T PHA02653 385 TALKKYTPPKGSSGIVFVASV 405 (675)
T ss_pred HHHHHhhcccCCcEEEEECcH
Confidence 223222 2346899999986
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.85 E-value=4.3e-20 Score=194.49 Aligned_cols=164 Identities=18% Similarity=0.269 Sum_probs=118.7
Q ss_pred HHHHHHHHHHcCCc--EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcC
Q 009212 294 IQAMAFPPVVEGKS--CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (540)
Q Consensus 294 iQ~~aip~il~G~d--vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~ 371 (540)
+|.++|+.+..+.+ ++++||||||||++|++|++.. ..+++|++|+++|++|+++.++.+...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~---------------~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG---------------ENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc---------------CCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 49999999998874 7889999999999999998841 235899999999999999999987631
Q ss_pred ---CCCceEEEEeCCcchH--HHH------------------HhhcCCCcEEEeChHHHHHHHHhccc--------cCCC
Q 009212 372 ---GVPFRSMVVTGGFRQK--TQL------------------ENLQEGVDVLIATPGRFMFLIKEGIL--------QLIN 420 (540)
Q Consensus 372 ---~~~l~v~~l~Gg~~~~--~q~------------------~~l~~~~dIlVaTP~rL~~ll~~~~~--------~l~~ 420 (540)
..+..+..+.|..... ... ......++|+++||+.|..+++.... .+..
T Consensus 66 ~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~ 145 (357)
T TIGR03158 66 FKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTK 145 (357)
T ss_pred cCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcC
Confidence 1245666666653221 000 01123588999999999877654211 2578
Q ss_pred ccEEEEeCCcccCCCCC-----HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 421 LRCAILDEVDILFNDED-----FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~-----f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
++++||||+|.+-. .+ +......++.......+++++|||+++.+...+...
T Consensus 146 ~~~iV~DE~H~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~ 202 (357)
T TIGR03158 146 FSTVIFDEFHLYDA-KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNA 202 (357)
T ss_pred CCEEEEecccccCc-ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhc
Confidence 99999999999862 22 112333444444445799999999999988888775
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.84 E-value=2.8e-20 Score=195.25 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=106.0
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~ 386 (540)
++++.||||||||++|++|++..+.. ....+++|++|+++|+.|+++.+..++.. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~----------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~ 66 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS----------QKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSF 66 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh----------CCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHH
Confidence 68999999999999999999987643 23568999999999999999999997531 33444443321
Q ss_pred H------------HHHHhhc------CCCcEEEeChHHHHHHHHhcc----ccCC--CccEEEEeCCcccCCCCCHHHHH
Q 009212 387 K------------TQLENLQ------EGVDVLIATPGRFMFLIKEGI----LQLI--NLRCAILDEVDILFNDEDFEVAL 442 (540)
Q Consensus 387 ~------------~q~~~l~------~~~dIlVaTP~rL~~ll~~~~----~~l~--~i~~LVlDEad~ll~d~~f~~~i 442 (540)
. ....... ...+|+|+||+++...+..+. ..+. ..+++||||||.+. +.++.. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~-~~~~~~-l 144 (358)
T TIGR01587 67 KRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYD-EYTLAL-I 144 (358)
T ss_pred HHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCC-HHHHHH-H
Confidence 0 0000110 136899999999987765521 1111 23789999999998 544443 5
Q ss_pred HHHHHhCC-CCCcEEEEeccCCHHHHHHHHHhC
Q 009212 443 QSLISSSP-VTAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 443 ~~Il~~l~-~~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
..+++.+. ...|++++|||+|..+.+++....
T Consensus 145 ~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~ 177 (358)
T TIGR01587 145 LAVLEVLKDNDVPILLMSATLPKFLKEYAEKIG 177 (358)
T ss_pred HHHHHHHHHcCCCEEEEecCchHHHHHHHhcCC
Confidence 55555443 478999999999987766665543
No 66
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.4e-20 Score=210.44 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=132.1
Q ss_pred ccccCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCC
Q 009212 270 FKELGCSDYMIESLK-----RQNFLRP---SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (540)
Q Consensus 270 F~~l~L~~~ll~~L~-----~~gf~~p---tpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~ 341 (540)
-+.|++..++.+.+. .+||..| +|+|.+++|.++.++++++.++||+|||+||++|++..+...
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-------- 135 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-------- 135 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------
Confidence 356778888888876 6799999 999999999999999999999999999999999999877532
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhccccCC-
Q 009212 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGILQLI- 419 (540)
Q Consensus 342 ~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~~~l~- 419 (540)
..++||+||++||.|+++.+..+.++ .++++.+++||.....+...+ +|||+||||++| .++++.+.+.++
T Consensus 136 ----~~v~IVTpTrELA~Qdae~m~~L~k~-lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~ 208 (970)
T PRK12899 136 ----KPVHLVTVNDYLAQRDCEWVGSVLRW-LGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRK 208 (970)
T ss_pred ----CCeEEEeCCHHHHHHHHHHHHHHHhh-cCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCH
Confidence 13899999999999999999999885 679999999999998887665 499999999999 999998766666
Q ss_pred ------CccEEEEeCCcccCC
Q 009212 420 ------NLRCAILDEVDILFN 434 (540)
Q Consensus 420 ------~i~~LVlDEad~ll~ 434 (540)
.+.++||||||.|+-
T Consensus 209 ~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 209 EEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHhhcccccEEEEechhhhhh
Confidence 458999999999985
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.83 E-value=2.1e-19 Score=205.89 Aligned_cols=210 Identities=17% Similarity=0.151 Sum_probs=146.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCc
Q 009212 296 AMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF 375 (540)
Q Consensus 296 ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l 375 (540)
.+.+..+.++++++++|+||||||.+|.+++++... ...++||+.|||++|.|+++.+.+......+.
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------------cCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 345566778899999999999999999999886421 12479999999999999999986543333556
Q ss_pred eEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcc-cCCCCCH-HHHHHHHHHhCCCCC
Q 009212 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDF-EVALQSLISSSPVTA 453 (540)
Q Consensus 376 ~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~-ll~d~~f-~~~i~~Il~~l~~~~ 453 (540)
.++..+++.... ....+|+|+|||+|++++... ..++++++|||||+|. .+ +..+ ...+..+++.++...
T Consensus 79 ~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l-~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 79 TVGYRMRAESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSL-QADLALALLLDVQQGLRDDL 150 (812)
T ss_pred eEEEEecCcccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCcccc-ccchHHHHHHHHHHhCCccc
Confidence 777777655322 234589999999999998864 5789999999999997 44 3332 233455667778889
Q ss_pred cEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEE
Q 009212 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTI 533 (540)
Q Consensus 454 Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtI 533 (540)
|+++||||++.+. +..++.++.++..... ...++++|+.+...+. ....-...|..++... .+.+|
T Consensus 151 qlilmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~-------~~~~v~~~l~~~l~~~-~g~iL 216 (812)
T PRK11664 151 KLLIMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQR-------FDEAVARATAELLRQE-SGSLL 216 (812)
T ss_pred eEEEEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhh-------HHHHHHHHHHHHHHhC-CCCEE
Confidence 9999999999763 4567766555543322 2246777776543210 0001112455555543 47899
Q ss_pred EEeccc
Q 009212 534 VFCNKK 539 (540)
Q Consensus 534 IFcnSr 539 (540)
||||++
T Consensus 217 VFlpg~ 222 (812)
T PRK11664 217 LFLPGV 222 (812)
T ss_pred EEcCCH
Confidence 999985
No 68
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.83 E-value=4.2e-19 Score=203.29 Aligned_cols=211 Identities=20% Similarity=0.187 Sum_probs=147.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCC
Q 009212 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374 (540)
Q Consensus 295 Q~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~ 374 (540)
-.+.+..+..++++|++|+||||||.+|.+++++... .+.++||+.|+|++|.|+++.+.+......+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g 74 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------------IGGKIIMLEPRRLAARSAAQRLASQLGEAVG 74 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcC
Confidence 3455566778899999999999999999999987651 2358999999999999999998654332244
Q ss_pred ceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCc-ccCCCCCHHH-HHHHHHHhCCCC
Q 009212 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD-ILFNDEDFEV-ALQSLISSSPVT 452 (540)
Q Consensus 375 l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad-~ll~d~~f~~-~i~~Il~~l~~~ 452 (540)
..++..+.+.. ......+|+|+||++|++++... ..++++++|||||+| +++ +..+.. .+..+...++..
T Consensus 75 ~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L-~~Dl~L~ll~~i~~~lr~d 146 (819)
T TIGR01970 75 QTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSL-DADLGLALALDVQSSLRED 146 (819)
T ss_pred cEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhh-ccchHHHHHHHHHHhcCCC
Confidence 55665554432 22345789999999999998764 578999999999999 467 445543 345566667788
Q ss_pred CcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcE
Q 009212 453 AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKT 532 (540)
Q Consensus 453 ~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rt 532 (540)
.|+|+||||++.+. +.+++.++.++..... ...++++|+.+...+ .........+..++... .+++
T Consensus 147 lqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~-------~~~~~v~~~l~~~l~~~-~g~i 212 (819)
T TIGR01970 147 LKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQ-------RLEDAVSRAVEHALASE-TGSI 212 (819)
T ss_pred ceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhh-------hHHHHHHHHHHHHHHhc-CCcE
Confidence 99999999999764 4567766555443321 223667776554321 00011223455566543 4689
Q ss_pred EEEeccc
Q 009212 533 IVFCNKK 539 (540)
Q Consensus 533 IIFcnSr 539 (540)
||||+++
T Consensus 213 LVFlpg~ 219 (819)
T TIGR01970 213 LVFLPGQ 219 (819)
T ss_pred EEEECCH
Confidence 9999975
No 69
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=1.2e-18 Score=163.77 Aligned_cols=186 Identities=34% Similarity=0.508 Sum_probs=151.3
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 285 RQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 285 ~~gf~~ptpiQ~~aip~il~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
..++..|+++|.+++..+..+ +++++.++||+|||.+++.+++..+... ...++||++|++.++.|+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~----------~~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG----------KGKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc----------CCCcEEEEeCCHHHHHHHHH
Confidence 346789999999999999998 9999999999999999999998887542 13579999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCC-cEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHH
Q 009212 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGV-DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (540)
Q Consensus 364 ~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~-dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i 442 (540)
.+..+... .........++.........+..+. +|+++|++.+.+.+.........++++|+||+|.+. ...+...+
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~-~~~~~~~~ 150 (201)
T smart00487 73 ELKKLGPS-LGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL-DGGFGDQL 150 (201)
T ss_pred HHHHHhcc-CCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh-cCCcHHHH
Confidence 99988753 2224444555555455556666666 999999999999998876677789999999999998 34788888
Q ss_pred HHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeC
Q 009212 443 QSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (540)
Q Consensus 443 ~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~ 482 (540)
..++..++...+++++|||++.........++.+...+..
T Consensus 151 ~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 151 EKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred HHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 9998888788999999999998887777777775555443
No 70
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=1.6e-17 Score=184.47 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=107.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|. .|+++|..++|.++.|+ |+.+.||+|||++|++|++.... .++.++||+||++||.|.++.+
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al------------~G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL------------AGLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh------------cCCeEEEEcCcHHHHHHHHHHH
Confidence 354 79999999999999999 99999999999999999997653 3678999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhccc-------------------------cCC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL-------------------------QLI 419 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~~-------------------------~l~ 419 (540)
..+..+ .++++.+++|+.... .+....+|||+++|...| .++|+.+.. ...
T Consensus 165 ~~l~~~-lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 165 RPLYEA-LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHhh-cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 999885 789999999997643 344456799999999887 355544321 134
Q ss_pred CccEEEEeCCcccC
Q 009212 420 NLRCAILDEVDILF 433 (540)
Q Consensus 420 ~i~~LVlDEad~ll 433 (540)
.+.+.||||+|.++
T Consensus 242 ~~~~aIvDEvDSiL 255 (656)
T PRK12898 242 GLHFAIVDEADSVL 255 (656)
T ss_pred ccceeEeeccccee
Confidence 57899999999865
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=6e-18 Score=184.74 Aligned_cols=222 Identities=17% Similarity=0.270 Sum_probs=159.6
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHH
Q 009212 281 ESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (540)
Q Consensus 281 ~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~ 359 (540)
..|++ +||..+.+-|.++|..+++|+|+++..|||+||++||.+|++-. ..-+|||+|..+|..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------------~G~TLVVSPLiSLM~ 71 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------------EGLTLVVSPLISLMK 71 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------------CCCEEEECchHHHHH
Confidence 44555 49999999999999999999999999999999999999999854 115999999999998
Q ss_pred HHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---cC-CCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCC
Q 009212 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---QE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND 435 (540)
Q Consensus 360 Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d 435 (540)
.+.+.++..+ +.+..+.+..+..+....+ .. ..++|.-+|++|..-.-.+.+.-..+.++||||||++. .
T Consensus 72 DQV~~l~~~G-----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS-q 145 (590)
T COG0514 72 DQVDQLEAAG-----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS-Q 145 (590)
T ss_pred HHHHHHHHcC-----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHh-h
Confidence 8888888753 5677777665555443333 23 37999999999974322223335578899999999999 6
Q ss_pred CC--HHHHHHHHHH---hCCCCCcEEEEeccCCHHHHHHHHHhCC--CceEEeCCCccccCCCceeEEEEcCCCCCCCCc
Q 009212 436 ED--FEVALQSLIS---SSPVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESDKT 508 (540)
Q Consensus 436 ~~--f~~~i~~Il~---~l~~~~Q~ll~SATlp~~i~~~l~~~l~--~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~ 508 (540)
+| |++.+.++-. .++ ...++.+|||-++.+...|...+. .+.++.. ....+||...++.....
T Consensus 146 WGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~---sfdRpNi~~~v~~~~~~------ 215 (590)
T COG0514 146 WGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG---SFDRPNLALKVVEKGEP------ 215 (590)
T ss_pred cCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe---cCCCchhhhhhhhcccH------
Confidence 65 9998887744 445 789999999999999999988873 3333332 23445555444432210
Q ss_pred hhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 509 PETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 509 ~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..++..|.. +.....+..||||.||
T Consensus 216 -----~~q~~fi~~-~~~~~~~~GIIYc~sR 240 (590)
T COG0514 216 -----SDQLAFLAT-VLPQLSKSGIIYCLTR 240 (590)
T ss_pred -----HHHHHHHHh-hccccCCCeEEEEeeH
Confidence 122322222 1134456799999997
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.76 E-value=6.1e-18 Score=185.77 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=115.3
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 288 f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
...|+++|+++++.++.+++.++++|||+|||+++...+ ..+... ...++|||+||++|+.|+.+.+++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~----------~~~~vLilvpt~eL~~Q~~~~l~~ 180 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN----------YEGKVLIIVPTTSLVTQMIDDFVD 180 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc----------CCCeEEEEECcHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999765422 222211 234899999999999999999999
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
++.. ....+..+.+|.... ...+|+|+||+++..... ..+.++++||+||||++. .. .+..++.
T Consensus 181 ~~~~-~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~-~~----~~~~il~ 244 (501)
T PHA02558 181 YRLF-PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFT-GK----SLTSIIT 244 (501)
T ss_pred hccc-cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhccc-ch----hHHHHHH
Confidence 8753 234455666665432 347999999999876442 246789999999999998 33 3456666
Q ss_pred hCCCCCcEEEEeccCCHH
Q 009212 448 SSPVTAQYLFVTATLPVE 465 (540)
Q Consensus 448 ~l~~~~Q~ll~SATlp~~ 465 (540)
.++..+|+++||||++..
T Consensus 245 ~~~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 245 KLDNCKFKFGLTGSLRDG 262 (501)
T ss_pred hhhccceEEEEeccCCCc
Confidence 676678999999999643
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.76 E-value=8.3e-17 Score=182.31 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=118.6
Q ss_pred CCcHHHHHHHHHHHcC---CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G---~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
.+|+.|++++..+..+ +++++.++||||||.+|+.++...+.. +.++|||+|+++|+.|+++.++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------------g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------------GKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------------CCeEEEEeCcHHHHHHHHHHHH
Confidence 6899999999999874 789999999999999998887766532 4579999999999999999998
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHh---h-cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCC--CCH--
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND--EDF-- 438 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~---l-~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d--~~f-- 438 (540)
+.+ +..+..++|+....++... + ...++|+|+|+..+. ..+.++.+|||||+|...-. ...
T Consensus 212 ~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 212 ARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 754 3578889988776544332 2 245899999998762 56789999999999976411 111
Q ss_pred -HHHHHHHHHhCCCCCcEEEEeccCCHHHHHHH
Q 009212 439 -EVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (540)
Q Consensus 439 -~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l 470 (540)
...+. ++.....+.|++++|||.+.+....+
T Consensus 281 ~~r~va-~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 281 HARDLA-VVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred cHHHHH-HHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 12222 22333458999999999886655443
No 74
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=2.4e-17 Score=186.42 Aligned_cols=250 Identities=16% Similarity=0.253 Sum_probs=171.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 009212 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (540)
Q Consensus 274 ~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~ 352 (540)
.+|.+-..++. |...++.+|......++.+ .|+++|||||+|||-.+++-+++.+...... .........+++|++
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~-dgs~nl~~fKIVYIA 371 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRE-DGSVNLAPFKIVYIA 371 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhccccc-ccceecccceEEEEe
Confidence 45555555543 5667999999999998876 5999999999999999999999998654221 112234567899999
Q ss_pred cCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc--ccCCCccEEEEeCCc
Q 009212 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEVD 430 (540)
Q Consensus 353 PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~--~~l~~i~~LVlDEad 430 (540)
|.++|+..+...+.+-... .+++|..++|+.....+. + .+.+|||+||+++.-+.++.. ...+-++++|+||.|
T Consensus 372 PmKaLvqE~VgsfSkRla~-~GI~V~ElTgD~~l~~~q--i-eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH 447 (1674)
T KOG0951|consen 372 PMKALVQEMVGSFSKRLAP-LGITVLELTGDSQLGKEQ--I-EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH 447 (1674)
T ss_pred eHHHHHHHHHHHHHhhccc-cCcEEEEecccccchhhh--h-hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh
Confidence 9999999998876654442 679999999998754321 1 346899999999866665532 234568899999999
Q ss_pred ccCCCCCHHHHHHHHHHhC-------CCCCcEEEEeccCC--HHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCC
Q 009212 431 ILFNDEDFEVALQSLISSS-------PVTAQYLFVTATLP--VEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (540)
Q Consensus 431 ~ll~d~~f~~~i~~Il~~l-------~~~~Q~ll~SATlp--~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~ 501 (540)
.+.+ ...+.++.|...+ ...++++++|||+| .++..++.-.. +-...+.+ ..-+..+.|.|+.+..
T Consensus 448 LLhD--dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~--syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 448 LLHD--DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDS--SYRPVPLKQQYIGITE 522 (1674)
T ss_pred hccc--ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCc--ccCcCCccceEecccc
Confidence 8873 4555555554332 34789999999999 45555443333 22222222 2233447888888775
Q ss_pred CCCCCCchhhHhhhHHHHHH-HHHHhCCCCcEEEEecccC
Q 009212 502 DQESDKTPETAFLNKKSALL-QLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~-~ll~~~~~~rtIIFcnSr~ 540 (540)
. .+..++...-++.+ .+++....+|+||||.||.
T Consensus 523 k-----~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRk 557 (1674)
T KOG0951|consen 523 K-----KPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRK 557 (1674)
T ss_pred C-----CchHHHHHHHHHHHHHHHHhCCCCcEEEEEEech
Confidence 3 33333333344443 3555555689999999973
No 75
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=6.4e-17 Score=184.96 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=146.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 283 L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
....+| .+-++|++++-++..|.+|+++||||+|||++.-.++...+.. +-+++|.+|.++|.+|.+
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------------~qrviYTsPIKALsNQKy 179 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------------GQRVIYTSPIKALSNQKY 179 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------------CCceEeccchhhhhhhHH
Confidence 355677 6999999999999999999999999999999988887766654 335999999999999999
Q ss_pred HHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHH
Q 009212 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (540)
Q Consensus 363 ~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i 442 (540)
..+...... ..-.+++++|+.... .++.|+|.|.+.|.+++.++...+..+.+||+||+|.|- |.......
T Consensus 180 rdl~~~fgd-v~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~-D~eRG~VW 250 (1041)
T COG4581 180 RDLLAKFGD-VADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG-DRERGVVW 250 (1041)
T ss_pred HHHHHHhhh-hhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc-ccccchhH
Confidence 999876541 122468888887654 468999999999999999998899999999999999998 88888999
Q ss_pred HHHHHhCCCCCcEEEEeccCCHH--HHHHHHHhCCCceEEeCC
Q 009212 443 QSLISSSPVTAQYLFVTATLPVE--IYNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 443 ~~Il~~l~~~~Q~ll~SATlp~~--i~~~l~~~l~~~~~i~~~ 483 (540)
+.++-++|...|+++||||+|.. ...|+...-..+..++..
T Consensus 251 EE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t 293 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST 293 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee
Confidence 99999999999999999999754 444444333344444444
No 76
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=3.8e-16 Score=176.78 Aligned_cols=131 Identities=18% Similarity=0.274 Sum_probs=109.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|. .|+++|..+++.+..|+ |+.+.||+|||++|++|++...+. ++.++|++||++||.|.+..+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~------------G~~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE------------GKGVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc------------CCCeEEEeCCHHHHHHHHHHH
Confidence 465 89999999999998887 999999999999999999865542 667999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhcc------ccCCCccEEEEeCCcccC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILF 433 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~------~~l~~i~~LVlDEad~ll 433 (540)
..+..+ .++++.+++|+.....+.+.. .++||+++||++| .++|+.+. ..+..+.++||||||.|+
T Consensus 140 ~~l~~~-lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 140 GQVYEF-LGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHhh-cCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 999886 789999999998843333333 4599999999999 56555432 356789999999999976
No 77
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.71 E-value=2.4e-16 Score=166.27 Aligned_cols=170 Identities=23% Similarity=0.251 Sum_probs=138.9
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 288 f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
.-.++.+|......++. +|++++.|||-|||+.+++-+..++.+. .+ ++|+|+||+.|+.|.+..|++
T Consensus 13 ~ie~R~YQ~~i~a~al~-~NtLvvlPTGLGKT~IA~~V~~~~l~~~----------~~-kvlfLAPTKPLV~Qh~~~~~~ 80 (542)
T COG1111 13 TIEPRLYQLNIAAKALF-KNTLVVLPTGLGKTFIAAMVIANRLRWF----------GG-KVLFLAPTKPLVLQHAEFCRK 80 (542)
T ss_pred cccHHHHHHHHHHHHhh-cCeEEEecCCccHHHHHHHHHHHHHHhc----------CC-eEEEecCCchHHHHHHHHHHH
Confidence 34677888887777776 4999999999999999999999888764 24 899999999999999999999
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
.... +.-.++.++|.....+....+. ..+|+|+||..+.+-+..+.+++.++.+|||||||+-.++..|....+.+++
T Consensus 81 v~~i-p~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 81 VTGI-PEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred HhCC-ChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 8763 4567889999988776655544 4799999999999999999999999999999999999866667777776666
Q ss_pred hCCCCCcEEEEeccCC---HHHHHHHHH
Q 009212 448 SSPVTAQYLFVTATLP---VEIYNKLVE 472 (540)
Q Consensus 448 ~l~~~~Q~ll~SATlp---~~i~~~l~~ 472 (540)
. ..++.++++|||.. ..+.+.+.+
T Consensus 159 ~-~k~~~ilgLTASPGs~~ekI~eV~~n 185 (542)
T COG1111 159 S-AKNPLILGLTASPGSDLEKIQEVVEN 185 (542)
T ss_pred h-ccCceEEEEecCCCCCHHHHHHHHHh
Confidence 5 34789999999985 444444333
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.71 E-value=3.3e-16 Score=175.93 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=100.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|. .|+++|......+..| .|+.++||+|||++|++|++...+. ++.++|++|+++||.|.++.+
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~------------g~~V~VVTpn~yLA~Rdae~m 131 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT------------GKGAMLVTTNDYLAKRDAEEM 131 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc------------CCceEEeCCCHHHHHHHHHHH
Confidence 354 6666666666555555 6999999999999999998765542 346999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcc---hHHHHHhhcCCCcEEEeChHHH-HHHHHhc------cccCCCccEEEEeCCcccCC
Q 009212 366 RSLSKCGVPFRSMVVTGGFR---QKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFN 434 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~---~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~------~~~l~~i~~LVlDEad~ll~ 434 (540)
..+..+ .++.+.+++++.. ...+......+|||+++||++| .++|..+ ...+..+.++|+||||.|+-
T Consensus 132 ~~l~~~-LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 132 GPVYEW-LGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred HHHHhh-cCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 999875 6888888777632 2222333445799999999999 4655432 33467899999999999863
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=176.67 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=138.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 276 ~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
.+..+..+.--..-.++.+|.+..-.+| |+|+||++|||+|||+++..-+++++.+. ...++|+++|++
T Consensus 48 ~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~----------p~~KiVF~aP~~ 116 (746)
T KOG0354|consen 48 DESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR----------PKGKVVFLAPTR 116 (746)
T ss_pred ChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC----------CcceEEEeeCCc
Confidence 3444333333344578999999998888 99999999999999999999999998763 347899999999
Q ss_pred HHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc-cCCCccEEEEeCCcccCC
Q 009212 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFN 434 (540)
Q Consensus 356 eLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~-~l~~i~~LVlDEad~ll~ 434 (540)
-|+.|+...+..++. +..+....||.........+....+|+|+||..|.+.|..+.. .|+.+.++||||||+-.+
T Consensus 117 pLv~QQ~a~~~~~~~---~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~k 193 (746)
T KOG0354|consen 117 PLVNQQIACFSIYLI---PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSK 193 (746)
T ss_pred hHHHHHHHHHhhccC---cccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccc
Confidence 999999966666653 4566666666443333334555689999999999988876543 369999999999999987
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 435 d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
+..|...++.++.......|+|++|||+....
T Consensus 194 n~~Y~~Vmr~~l~~k~~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 194 NHPYNNIMREYLDLKNQGNQILGLTASPGSKL 225 (746)
T ss_pred cccHHHHHHHHHHhhhccccEEEEecCCCccH
Confidence 77788888888887766679999999996443
No 80
>PRK13766 Hef nuclease; Provisional
Probab=99.70 E-value=5.4e-16 Score=178.85 Aligned_cols=162 Identities=22% Similarity=0.249 Sum_probs=129.1
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
+...|+++|.+++..++.+ |+++++|||+|||++|++++...+.. .+.++|||+||++|+.|+...++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-----------~~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-----------KGGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3457899999999888886 99999999999999999999887731 24589999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHH
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il 446 (540)
++... ....+..++|+...... ..+...++|+|+||+.+...+..+.+.+.++++|||||||++.++..+...+..+.
T Consensus 80 ~~~~~-~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~ 157 (773)
T PRK13766 80 KFLNI-PEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH 157 (773)
T ss_pred HHhCC-CCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH
Confidence 87653 24577788888776543 44445689999999999888777788889999999999999985545554444443
Q ss_pred HhCCCCCcEEEEeccCC
Q 009212 447 SSSPVTAQYLFVTATLP 463 (540)
Q Consensus 447 ~~l~~~~Q~ll~SATlp 463 (540)
......++++||||..
T Consensus 158 -~~~~~~~il~lTaTP~ 173 (773)
T PRK13766 158 -EDAKNPLVLGLTASPG 173 (773)
T ss_pred -hcCCCCEEEEEEcCCC
Confidence 3344678999999963
No 81
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=2e-16 Score=171.78 Aligned_cols=184 Identities=18% Similarity=0.264 Sum_probs=149.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.+-|+|..||-++-++.+|+|+|.|.+|||.++-.+|.+.+... -++||..|.++|-+|-|+++..-+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k------------QRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK------------QRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc------------CeEEeeChhhhhcchhHHHHHHHh
Confidence 67899999999999999999999999999999999998888754 379999999999999999988765
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l 449 (540)
+ .+++.+|+.... ..+.++|.|.+.|..+|.++.-.+..+.++|+||+|-|- |....-..+.-+-.+
T Consensus 197 ~-----DVGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMR-DkERGVVWEETIIll 263 (1041)
T KOG0948|consen 197 K-----DVGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMR-DKERGVVWEETIILL 263 (1041)
T ss_pred c-----ccceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhcc-ccccceeeeeeEEec
Confidence 4 578888888755 346899999999999999988888999999999999998 766666666666678
Q ss_pred CCCCcEEEEeccCCHHH--HHHHHHhCCCceEEeCCCccccCCCceeEEEEcC
Q 009212 450 PVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (540)
Q Consensus 450 ~~~~Q~ll~SATlp~~i--~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~ 500 (540)
|...+++++|||+|... .+|+...-..+.+++-.....++ ++|+++...
T Consensus 264 P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTP--LQHyifP~g 314 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTP--LQHYIFPAG 314 (1041)
T ss_pred cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCc--ceeeeecCC
Confidence 99999999999999654 45665555555555544444443 566655433
No 82
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.67 E-value=7.8e-16 Score=170.83 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=141.2
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 285 ~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
...| .|-.+|++||-++..|.+|+|.|+|.+|||+++-.+|.-.- .+..++||.+|.++|-+|-++.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------------~h~TR~iYTSPIKALSNQKfRD 359 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------------KHMTRTIYTSPIKALSNQKFRD 359 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------------hhccceEecchhhhhccchHHH
Confidence 3455 68999999999999999999999999999999776654322 2356899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHH
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~ 444 (540)
+++-+. .+.+++|+.... ..+.++|.|.+.|.++|.++...+.++.++|+||+|-+- |....-..+.
T Consensus 360 Fk~tF~-----DvgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiN-D~eRGvVWEE 426 (1248)
T KOG0947|consen 360 FKETFG-----DVGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIN-DVERGVVWEE 426 (1248)
T ss_pred HHHhcc-----ccceeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecc-ccccccccee
Confidence 998654 334889887654 347899999999999999999889999999999999988 8888888899
Q ss_pred HHHhCCCCCcEEEEeccCCHHH--HHHHHHhCCCceEEeCC
Q 009212 445 LISSSPVTAQYLFVTATLPVEI--YNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 445 Il~~l~~~~Q~ll~SATlp~~i--~~~l~~~l~~~~~i~~~ 483 (540)
++-.+|...++|++|||+|+.. ..|+.+.-..-..+++.
T Consensus 427 ViIMlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST 467 (1248)
T KOG0947|consen 427 VIIMLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVIST 467 (1248)
T ss_pred eeeeccccceEEEEeccCCChHHHHHHhhhccCceEEEEec
Confidence 9999999999999999998654 34444333333344433
No 83
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.67 E-value=1.3e-15 Score=174.87 Aligned_cols=229 Identities=17% Similarity=0.216 Sum_probs=161.7
Q ss_pred HHHHHH-HHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH
Q 009212 278 YMIESL-KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (540)
Q Consensus 278 ~ll~~L-~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre 356 (540)
+++..+ ..+|+..+.+-|.++|...+.|+|+++..|||.||++||.||++- .+..+|+|.|...
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---------------~~gitvVISPL~S 315 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL---------------LGGVTVVISPLIS 315 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc---------------cCCceEEeccHHH
Confidence 344444 446999999999999999999999999999999999999999973 2347999999999
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh---hcC---CCcEEEeChHHHHHH--HHhccccCCC---ccEEE
Q 009212 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQE---GVDVLIATPGRFMFL--IKEGILQLIN---LRCAI 425 (540)
Q Consensus 357 La~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l~~---~~dIlVaTP~rL~~l--l~~~~~~l~~---i~~LV 425 (540)
|++.+...+ .. .++....+.++....++... +.+ .++|+.-||+++... +......+.. +.++|
T Consensus 316 Lm~DQv~~L---~~--~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~v 390 (941)
T KOG0351|consen 316 LMQDQVTHL---SK--KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFV 390 (941)
T ss_pred HHHHHHHhh---hh--cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEE
Confidence 976655554 33 45777888887766544332 223 489999999998732 3322334444 88999
Q ss_pred EeCCcccCC-CCCHHHHHHHHHHhC--CCCCcEEEEeccCCHHHHHHHHHhC--CCceEEeCCCccccCCCceeEEEEcC
Q 009212 426 LDEVDILFN-DEDFEVALQSLISSS--PVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEFLVDCS 500 (540)
Q Consensus 426 lDEad~ll~-d~~f~~~i~~Il~~l--~~~~Q~ll~SATlp~~i~~~l~~~l--~~~~~i~~~~~~~~~~~I~q~~v~~~ 500 (540)
|||||+..+ .+.|++..+++-... -....+|.+|||.+..+...+...+ .++.++. ......|+...|..-.
T Consensus 391 IDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~ 467 (941)
T KOG0351|consen 391 IDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKT 467 (941)
T ss_pred ecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEecc
Confidence 999999983 234888888763322 2248999999999999999998877 5555443 2345566655555433
Q ss_pred CCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
.. ..-...+..+-..++...+||||.+|.
T Consensus 468 ~~-----------~~~~~~~~~~~~~~~~~s~IIYC~sr~ 496 (941)
T KOG0351|consen 468 DK-----------DALLDILEESKLRHPDQSGIIYCLSRK 496 (941)
T ss_pred Cc-----------cchHHHHHHhhhcCCCCCeEEEeCCcc
Confidence 11 112233333444467789999999873
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.66 E-value=3e-15 Score=172.09 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=120.4
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 288 f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
...|+|+|+.+......+..+|+.||||+|||.++++.+...+.. ....+++|.+||+++++|+++.+.+
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~----------~~~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ----------GLADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCCeEEEECcHHHHHHHHHHHHHH
Confidence 348999999886544456779999999999999987776643322 2245799999999999999999886
Q ss_pred hhc-CCCCceEEEEeCCcchHHHHH---------------------hhc---C---CCcEEEeChHHHHHH-HHhccccC
Q 009212 368 LSK-CGVPFRSMVVTGGFRQKTQLE---------------------NLQ---E---GVDVLIATPGRFMFL-IKEGILQL 418 (540)
Q Consensus 368 l~~-~~~~l~v~~l~Gg~~~~~q~~---------------------~l~---~---~~dIlVaTP~rL~~l-l~~~~~~l 418 (540)
+.. ......+.+++|......... -+. + -.+|+|||.++++.. +..+...+
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~l 433 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFI 433 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHH
Confidence 443 111345777777654221110 011 1 168999999998843 33322222
Q ss_pred CC----ccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHHHHHHHhC
Q 009212 419 IN----LRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 419 ~~----i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
.. -++|||||+|.+ |......+..+++.+ .....+|++|||+|..+.+.+...+
T Consensus 434 R~~~La~svvIiDEVHAy--D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~ 492 (878)
T PRK09694 434 RGFGLGRSVLIVDEVHAY--DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTY 492 (878)
T ss_pred HHHhhccCeEEEechhhC--CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHh
Confidence 22 248999999998 455566677777654 3357899999999998887776654
No 85
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=5.4e-15 Score=130.86 Aligned_cols=144 Identities=33% Similarity=0.449 Sum_probs=111.5
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~ 385 (540)
+++++.++||+|||..++..+...... ....+++|++|++.++.|....+...... ...+..+.+...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcc
Confidence 478999999999999988888876643 23568999999999999999999887653 567777787776
Q ss_pred hHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 386 ~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
............+|+|+|++.+...+..........+++||||+|.+. ...+...............+++++|||+
T Consensus 69 ~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 69 IKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLL-NQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHh-hcchHHHHHHHHhhCCccceEEEEeccC
Confidence 666555556779999999999988877655556678899999999998 4444433223334445678999999995
No 86
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.62 E-value=2.2e-15 Score=168.53 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=111.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|. .|+++|..+.+.+..|+ |+.++||+|||++|++|++...+. +..++|++||++||.|.++.+
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~------------G~~V~VvTpt~~LA~qdae~~ 117 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT------------GKGVHVVTVNDYLAQRDAEWM 117 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh------------CCCEEEEcCCHHHHHHHHHHH
Confidence 354 79999999999888876 999999999999999999644332 335999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhc------cccCCCccEEEEeCCcccCC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFN 434 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~------~~~l~~i~~LVlDEad~ll~ 434 (540)
..+..+ .++++.+++|+.....+...+ .+||+++||++| .++++.+ ...+..+.++||||+|.|+-
T Consensus 118 ~~l~~~-LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 118 GQVYRF-LGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HHHhcc-CCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 999886 789999999998876655444 489999999999 8888776 24678899999999999874
No 87
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.4e-15 Score=160.37 Aligned_cols=249 Identities=15% Similarity=0.147 Sum_probs=173.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCC-CCCc--hhhcHHHHHHHHHHHHhhccCC-------------------CCCC
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSCILADQS-GSGK--TLAYLLPVIQRLRQEELQGLSK-------------------STSG 344 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dvlv~ApT-GSGK--Tlayllpil~~l~~~~~~~~~~-------------------~~~~ 344 (540)
.-..+|+.|.+.+-.+.+.+|++..-.| +.|+ +-.|++++++++++.....+.. ....
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457899999999999999999875444 3454 6789999999997654333221 1225
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhc-CCCC---c----eEEEEeCCc--------chHHHHHhh---------------
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSK-CGVP---F----RSMVVTGGF--------RQKTQLENL--------------- 393 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~-~~~~---l----~v~~l~Gg~--------~~~~q~~~l--------------- 393 (540)
+|++|||||+|+-|..+.+.+..+.. ...+ + +..--++|. ...+..+.+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 79999999999999999999988732 1000 0 000111110 001111111
Q ss_pred ----------cCCCcEEEeChHHHHHHHHh------ccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCC-----
Q 009212 394 ----------QEGVDVLIATPGRFMFLIKE------GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT----- 452 (540)
Q Consensus 394 ----------~~~~dIlVaTP~rL~~ll~~------~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~----- 452 (540)
....|||||+|-.|..++.+ ....|+.|.++|||.||.|+ ++.|..+..|+.+++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l--~QNwEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML--MQNWEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH--HhhHHHHHHHHHHhhcCccccc
Confidence 12379999999999988863 24468899999999999998 88999999999988531
Q ss_pred -------------------CcEEEEeccCCHHHHHHHHHhCCCceEEeCCC-------ccccCCCceeEEEEcCCCCCCC
Q 009212 453 -------------------AQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-------MHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 453 -------------------~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~-------~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
+|+++||+-..+.+..++..++.|....+... ....-..+.|.+..... +...
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~-~si~ 529 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEV-KSII 529 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheec-cCcc
Confidence 69999999999999999998887754332221 11122234555544433 2345
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEecc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnS 538 (540)
..+.++|......++..+.+....-+|||++|
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPS 561 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPS 561 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecc
Confidence 66888899999888888887777789999986
No 88
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=6.2e-14 Score=153.92 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=95.8
Q ss_pred EEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH
Q 009212 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (540)
Q Consensus 309 lv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~ 388 (540)
++.|+||||||++|+..+...+. .+.++|||+|+++|+.|+++.+++.+ +..+.+++++....+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------------~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------------LGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------------cCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHH
Confidence 46799999999999766544432 24579999999999999999998764 246778888776554
Q ss_pred H---HHhhc-CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCC--C---HHHHHHHHHHhCCCCCcEEEEe
Q 009212 389 Q---LENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE--D---FEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 389 q---~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~--~---f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
. +..+. ..++|+|+|+..+ ...+.++.++||||+|...-.. + ....+..+.... ...++|++|
T Consensus 65 r~~~~~~~~~g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~S 136 (505)
T TIGR00595 65 KLQAWRKVKNGEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGS 136 (505)
T ss_pred HHHHHHHHHcCCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEe
Confidence 3 22333 3479999999876 2467889999999999865111 1 112233333333 478999999
Q ss_pred ccCCHHHHH
Q 009212 460 ATLPVEIYN 468 (540)
Q Consensus 460 ATlp~~i~~ 468 (540)
||.+.+...
T Consensus 137 ATPsles~~ 145 (505)
T TIGR00595 137 ATPSLESYH 145 (505)
T ss_pred CCCCHHHHH
Confidence 997765443
No 89
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.60 E-value=3.7e-15 Score=153.74 Aligned_cols=183 Identities=19% Similarity=0.276 Sum_probs=131.9
Q ss_pred HHHHHHHHC-CCCCC-cHHHHHHHHHHHcC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 278 YMIESLKRQ-NFLRP-SQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 278 ~ll~~L~~~-gf~~p-tpiQ~~aip~il~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
.+..+|++. ||.++ +++|++|+.++..+ +||.|++|||+||++||.||.|.+ +...|++.|.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---------------~gITIV~SPL 70 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---------------GGITIVISPL 70 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---------------CCeEEEehHH
Confidence 455677775 88776 89999999998765 699999999999999999999853 2379999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH------hhcCCCcEEEeChHHHH-----HHHHhccccCCCccE
Q 009212 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE------NLQEGVDVLIATPGRFM-----FLIKEGILQLINLRC 423 (540)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~------~l~~~~dIlVaTP~rL~-----~ll~~~~~~l~~i~~ 423 (540)
.+|+..+.+.+..|.. .+..+.+..+..+..+ +-+....|+.-||+.-. .+|+ ....-.-+.|
T Consensus 71 iALIkDQiDHL~~LKV-----p~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y 144 (641)
T KOG0352|consen 71 IALIKDQIDHLKRLKV-----PCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRY 144 (641)
T ss_pred HHHHHHHHHHHHhcCC-----chhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeee
Confidence 9999888888887742 3333333333332222 22335679999998754 2222 2334456899
Q ss_pred EEEeCCcccCC-CCCHHHHHHHHH---HhCCCCCcEEEEeccCCHHHHHHHHHhC--CCceEEeC
Q 009212 424 AILDEVDILFN-DEDFEVALQSLI---SSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMG 482 (540)
Q Consensus 424 LVlDEad~ll~-d~~f~~~i~~Il---~~l~~~~Q~ll~SATlp~~i~~~l~~~l--~~~~~i~~ 482 (540)
+|+||||+... ...|+++..++= ..++ ....+.++||-..++.+.+...+ .+|+-++.
T Consensus 145 ~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk 208 (641)
T KOG0352|consen 145 IVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFK 208 (641)
T ss_pred EEechhhhHhhhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhcc
Confidence 99999999983 234888877762 3333 67889999999999998887654 66666554
No 90
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.59 E-value=3.3e-14 Score=144.71 Aligned_cols=235 Identities=16% Similarity=0.234 Sum_probs=161.4
Q ss_pred cCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEE
Q 009212 273 LGCSDYMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (540)
Q Consensus 273 l~L~~~ll~~L~~~-gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL 351 (540)
++.+.+..+.|+.. ..++++|.|..+|.+.+.|+|++++.|||.||++||.||++-. ...+|+|
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---------------dg~alvi 140 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---------------DGFALVI 140 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---------------CCceEee
Confidence 44556666666553 5678999999999999999999999999999999999999742 2359999
Q ss_pred ccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh-------cCCCcEEEeChHHHHH---HHHh--ccccCC
Q 009212 352 APTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-------QEGVDVLIATPGRFMF---LIKE--GILQLI 419 (540)
Q Consensus 352 ~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l-------~~~~dIlVaTP~rL~~---ll~~--~~~~l~ 419 (540)
+|...|+..+.-++++|+- ....+...... +...+. .....+|..||+++.. ++.+ +.+...
T Consensus 141 ~plislmedqil~lkqlgi-----~as~lnanssk-e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~ 214 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLGI-----DASMLNANSSK-EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAG 214 (695)
T ss_pred chhHHHHHHHHHHHHHhCc-----chhhccCcccH-HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999998888888864 22222222222 222222 2336799999999863 2222 345667
Q ss_pred CccEEEEeCCcccCC-CCCHHHHHHH--HHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEE
Q 009212 420 NLRCAILDEVDILFN-DEDFEVALQS--LISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496 (540)
Q Consensus 420 ~i~~LVlDEad~ll~-d~~f~~~i~~--Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~ 496 (540)
.++++-+||+|+... ...|++.... |+++--+...+++++||-...+.......+--.. .+........+++.+.+
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~-~~tf~a~fnr~nl~yev 293 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA-AFTFRAGFNRPNLKYEV 293 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh-hheeecccCCCCceeEe
Confidence 788999999999973 2346666554 3444445788999999999888877766653211 11222455667777777
Q ss_pred EEcCCCCCCCCchhhHhhhHHHHHHHHHH-hCCCCcEEEEeccc
Q 009212 497 VDCSGDQESDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKK 539 (540)
Q Consensus 497 v~~~~~~~~~~~~~~~~~~K~~~L~~ll~-~~~~~rtIIFcnSr 539 (540)
..-++.+ .+-++.+..+++ +..+...||||-|+
T Consensus 294 ~qkp~n~----------dd~~edi~k~i~~~f~gqsgiiyc~sq 327 (695)
T KOG0353|consen 294 RQKPGNE----------DDCIEDIAKLIKGDFAGQSGIIYCFSQ 327 (695)
T ss_pred eeCCCCh----------HHHHHHHHHHhccccCCCcceEEEecc
Confidence 7666532 234555555554 35667899999875
No 91
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.59 E-value=8.9e-14 Score=163.57 Aligned_cols=207 Identities=18% Similarity=0.275 Sum_probs=123.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcc----CHHHHHHHHHHHHh-hhc
Q 009212 296 AMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP----TAELASQVLSNCRS-LSK 370 (540)
Q Consensus 296 ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~P----treLa~Qi~~~l~~-l~~ 370 (540)
.+.+..+..++.++++|+||||||. .+|.+..-.. ......+++.-| +++||.|+.+++.. ++.
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g---------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~ 148 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG---------RGVKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC---------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc
Confidence 3445556666778889999999998 5774422111 011112333345 56888888888875 333
Q ss_pred CCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCc-ccCCCCCHHH-HHHHHHHh
Q 009212 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD-ILFNDEDFEV-ALQSLISS 448 (540)
Q Consensus 371 ~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad-~ll~d~~f~~-~i~~Il~~ 448 (540)
. .++.+ ....+ ...+.+|+|+|||+|++.+..+. .|+++++||||||| +++ +.+|.. .+..++..
T Consensus 149 ~-VGY~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsL-n~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 149 C-VGYKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSL-NIDFILGYLKELLPR 215 (1294)
T ss_pred e-eceee-------cCccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCcccccc-ccchHHHHHHHhhhc
Confidence 1 22221 11111 13468999999999999988654 48999999999999 577 677764 34444433
Q ss_pred CCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHH---
Q 009212 449 SPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIE--- 525 (540)
Q Consensus 449 l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~--- 525 (540)
. +..|+|+||||++.+ .+.++|.+..++..+.. ...++++|..+...+... ....+..+...+.
T Consensus 216 r-pdlKvILmSATid~e---~fs~~F~~apvI~V~Gr---~~pVei~y~p~~~~~~~~------~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 216 R-PDLKVIITSATIDPE---RFSRHFNNAPIIEVSGR---TYPVEVRYRPIVEEADDT------ERDQLQAIFDAVDELG 282 (1294)
T ss_pred C-CCceEEEeeCCCCHH---HHHHHcCCCCEEEEcCc---cccceEEEeecccccchh------hHHHHHHHHHHHHHHh
Confidence 2 368999999999864 34566654333332221 123566666554321000 0122333333222
Q ss_pred hCCCCcEEEEeccc
Q 009212 526 KSPVSKTIVFCNKK 539 (540)
Q Consensus 526 ~~~~~rtIIFcnSr 539 (540)
....+.+||||+++
T Consensus 283 ~~~~GdILVFLpg~ 296 (1294)
T PRK11131 283 REGPGDILIFMSGE 296 (1294)
T ss_pred cCCCCCEEEEcCCH
Confidence 23457899999985
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=7.8e-14 Score=157.99 Aligned_cols=130 Identities=23% Similarity=0.290 Sum_probs=107.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|. .|+++|....-++..|+ |+.++||+|||+++.+|++-..+. +..+-|++||.+||.|.++.+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~------------G~~V~IvTpn~yLA~rd~e~~ 142 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT------------GKGVHVVTVNDYLAKRDAEWM 142 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc------------CCCEEEEecCHHHHHHHHHHH
Confidence 354 78999988876666664 899999999999999999633322 224779999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhccc------cCCCccEEEEeCCcccC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRCAILDEVDILF 433 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~~------~l~~i~~LVlDEad~ll 433 (540)
..+..+ .++++++++|+....++...+ .+||+++||++| .++|+.+.. .+..+.++||||||.|+
T Consensus 143 ~~l~~~-LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 143 GPLYEF-LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHHhh-cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 999885 789999999999888776665 389999999999 889977642 36789999999999976
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2.4e-14 Score=162.38 Aligned_cols=127 Identities=23% Similarity=0.285 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|+++|...--.+..| -|+.++||+|||++|++|++..++. +..++||+||++||.|.++.+..+.
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~------------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS------------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 6788887765445444 4889999999999999999977643 3359999999999999999999998
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhc-cccC-----CCccEEEEeCCcccC
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQL-----INLRCAILDEVDILF 433 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~-~~~l-----~~i~~LVlDEad~ll 433 (540)
.+ .++++.+++|+.....+...+ .+||+++||++| .++|+.+ .+.+ ..+.++||||||.|+
T Consensus 148 ~~-lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 148 EF-LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred cc-cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 86 689999999998877765554 589999999999 8999876 3334 589999999999986
No 94
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=9.1e-14 Score=156.30 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=103.9
Q ss_pred CCCcHHHHHHHHHHH-cC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVV-EG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 289 ~~ptpiQ~~aip~il-~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
..++|+|++++..+. .| +..++++|||+|||+..+..+. .+ +.++|||||+.+|+.|+.+.+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l--------------~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV--------------KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh--------------CCCEEEEeCcHHHHHHHHHHH
Confidence 368999999998877 34 4789999999999999775543 22 124999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh--------ccccCCCccEEEEeCCcccCCCCC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQLINLRCAILDEVDILFNDED 437 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~--------~~~~l~~i~~LVlDEad~ll~d~~ 437 (540)
.++... ....+..++|+.... .....+|+|+|+..+.....+ ..+.-....+||+||||++. .
T Consensus 319 ~~~~~l-~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp-A-- 389 (732)
T TIGR00603 319 KMWSTI-DDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP-A-- 389 (732)
T ss_pred HHhcCC-CCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc-H--
Confidence 988643 334566666654321 112368999999877533221 11222457799999999986 3
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 438 FEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 438 f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
.....++..+. ....+++|||+.
T Consensus 390 --~~fr~il~~l~-a~~RLGLTATP~ 412 (732)
T TIGR00603 390 --AMFRRVLTIVQ-AHCKLGLTATLV 412 (732)
T ss_pred --HHHHHHHHhcC-cCcEEEEeecCc
Confidence 33444555554 345799999985
No 95
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.52 E-value=6.6e-14 Score=131.47 Aligned_cols=153 Identities=22% Similarity=0.220 Sum_probs=101.2
Q ss_pred CCcHHHHHHHHHHHc-------CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVE-------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 290 ~ptpiQ~~aip~il~-------G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
+|+++|.+++..+.. .+++++.+|||||||++++..+..... ++||++|+..|+.|..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------------ceeEecCHHHHHHHHH
Confidence 578999999998873 689999999999999998754444331 6999999999999999
Q ss_pred HHHHhhhcCCCCceE----------EEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc-----------ccCCCc
Q 009212 363 SNCRSLSKCGVPFRS----------MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI-----------LQLINL 421 (540)
Q Consensus 363 ~~l~~l~~~~~~l~v----------~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~-----------~~l~~i 421 (540)
+.+..+......+.. ...............-....+|+++|...|........ ......
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 999766542111100 00111111112222234567899999999987765421 234467
Q ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
.+||+||||++.. .. ..+.++. .....+|+||||+.
T Consensus 148 ~~vI~DEaH~~~~-~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPS-DS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHH-HH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred CEEEEehhhhcCC-HH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 8999999999872 22 1444444 45678999999975
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.51 E-value=9.4e-14 Score=150.34 Aligned_cols=146 Identities=21% Similarity=0.176 Sum_probs=102.3
Q ss_pred CCCcHHHHHHHHHHHc----CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVVE----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~----G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
..++++|++++..+.. ++..++++|||+|||++++..+... ...+|||||+++|+.|..+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---------------cCCEEEEECcHHHHHHHHHH
Confidence 3699999999999988 8999999999999999876555432 12399999999999999877
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHH
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~ 444 (540)
+...... .-.++.+.|+..... . ..|.|+|...+...............+||+||||++. ...|......
T Consensus 100 ~~~~~~~--~~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~-a~~~~~~~~~ 169 (442)
T COG1061 100 LKKFLLL--NDEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP-APSYRRILEL 169 (442)
T ss_pred HHHhcCC--ccccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCC-cHHHHHHHHh
Confidence 7776542 223344444332211 1 3699999988865421112333468899999999998 4445544444
Q ss_pred HHHhCCCCCcEEEEeccCC
Q 009212 445 LISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 445 Il~~l~~~~Q~ll~SATlp 463 (540)
+....+ .+++|||++
T Consensus 170 ~~~~~~----~LGLTATp~ 184 (442)
T COG1061 170 LSAAYP----RLGLTATPE 184 (442)
T ss_pred hhcccc----eeeeccCce
Confidence 433222 899999976
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.45 E-value=5.8e-12 Score=138.25 Aligned_cols=222 Identities=20% Similarity=0.314 Sum_probs=158.6
Q ss_pred CCHHHHHH-HHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 275 CSDYMIES-LKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 275 L~~~ll~~-L~~~gf~~ptpiQ~~aip~il~G------~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
...++++. +..+.| ++|..|++++..|... .+=++++--|||||+++++.++..+. .|.+
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------------~G~Q 313 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------------AGYQ 313 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------------cCCe
Confidence 34455544 466688 7999999999998864 47889999999999999999998874 3678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHhhcCC-CcEEEeChHHHHHHHHhccccCCCccE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQEG-VDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q---~~~l~~~-~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
+..++||--||.|.++.+.++... .++++..++|....+.. ...+.+| .||+|+|-.-+ +..+.+.++.+
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgL 387 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEP-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGL 387 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhh-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeE
Confidence 999999999999999999998874 56999999998755443 4444555 89999997543 56778899999
Q ss_pred EEEeCCcccCCCCCHHHHHHHHHHhCCC-CCcEEEEeccC-CHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCC
Q 009212 424 AILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATL-PVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (540)
Q Consensus 424 LVlDEad~ll~d~~f~~~i~~Il~~l~~-~~Q~ll~SATl-p~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~ 501 (540)
+|+||-|++. -.-+..+..... .+-.+++|||. |..+ ....+.+..+.+......-...|.-+++...
T Consensus 388 VIiDEQHRFG------V~QR~~L~~KG~~~Ph~LvMTATPIPRTL---Alt~fgDldvS~IdElP~GRkpI~T~~i~~~- 457 (677)
T COG1200 388 VIIDEQHRFG------VHQRLALREKGEQNPHVLVMTATPIPRTL---ALTAFGDLDVSIIDELPPGRKPITTVVIPHE- 457 (677)
T ss_pred EEEecccccc------HHHHHHHHHhCCCCCcEEEEeCCCchHHH---HHHHhccccchhhccCCCCCCceEEEEeccc-
Confidence 9999999875 122333344444 57899999995 6554 4456666666555555555555655555422
Q ss_pred CCCCCCchhhHhhhHHHHHHHHHHh--CCCCcEEEEeccc
Q 009212 502 DQESDKTPETAFLNKKSALLQLIEK--SPVSKTIVFCNKK 539 (540)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~ll~~--~~~~rtIIFcnSr 539 (540)
+...+++.++. ..++|+.+.|+-.
T Consensus 458 --------------~~~~v~e~i~~ei~~GrQaY~VcPLI 483 (677)
T COG1200 458 --------------RRPEVYERIREEIAKGRQAYVVCPLI 483 (677)
T ss_pred --------------cHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 22222232222 2457888888754
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.44 E-value=6.5e-12 Score=148.45 Aligned_cols=220 Identities=19% Similarity=0.204 Sum_probs=130.8
Q ss_pred CCCCCCcHHHH---HHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 286 QNFLRPSQIQA---MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 286 ~gf~~ptpiQ~---~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
..|...-|+.. +.+..+..++.+|++|+||||||. .+|.+.. .. ......++++.-|.|--|..++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~ll--e~-------~~~~~~~I~~tQPRRlAA~svA 128 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICL--EL-------GRGSHGLIGHTQPRRLAARTVA 128 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHH--Hc-------CCCCCceEecCCccHHHHHHHH
Confidence 35555555554 344555566788889999999998 4565432 11 0011235566678888777777
Q ss_pred HHHHhhhcCCCCceEEEEeCC-cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCc-ccCCCCCHHH
Q 009212 363 SNCRSLSKCGVPFRSMVVTGG-FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVD-ILFNDEDFEV 440 (540)
Q Consensus 363 ~~l~~l~~~~~~l~v~~l~Gg-~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad-~ll~d~~f~~ 440 (540)
..+.+... ..++..+|. .....+ ......|+|+|+|.|+..+..+. .|..+++||||||| +++ +.+|..
T Consensus 129 ~RvA~elg----~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL-~~D~LL 199 (1283)
T TIGR01967 129 QRIAEELG----TPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSL-NIDFLL 199 (1283)
T ss_pred HHHHHHhC----CCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhc-cchhHH
Confidence 66665433 223333332 122221 12456899999999999887654 48899999999999 588 566664
Q ss_pred H-HHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHH
Q 009212 441 A-LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSA 519 (540)
Q Consensus 441 ~-i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~ 519 (540)
. +..++... ...|+|++|||++.+ .+.++|.+..++..... ...+..+|..+....... . ..+...
T Consensus 200 ~lLk~il~~r-pdLKlIlmSATld~~---~fa~~F~~apvI~V~Gr---~~PVev~Y~~~~~~~~~~---~---~~~~~~ 266 (1283)
T TIGR01967 200 GYLKQLLPRR-PDLKIIITSATIDPE---RFSRHFNNAPIIEVSGR---TYPVEVRYRPLVEEQEDD---D---LDQLEA 266 (1283)
T ss_pred HHHHHHHhhC-CCCeEEEEeCCcCHH---HHHHHhcCCCEEEECCC---cccceeEEecccccccch---h---hhHHHH
Confidence 3 66665544 478999999999853 45666765434333321 123445554433211000 0 122233
Q ss_pred ----HHHHHHhCCCCcEEEEeccc
Q 009212 520 ----LLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 520 ----L~~ll~~~~~~rtIIFcnSr 539 (540)
+..++.. ..+.+||||+++
T Consensus 267 i~~~I~~l~~~-~~GdILVFLpg~ 289 (1283)
T TIGR01967 267 ILDAVDELFAE-GPGDILIFLPGE 289 (1283)
T ss_pred HHHHHHHHHhh-CCCCEEEeCCCH
Confidence 3333333 347899999975
No 99
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.36 E-value=1.7e-11 Score=130.99 Aligned_cols=195 Identities=17% Similarity=0.199 Sum_probs=139.2
Q ss_pred CCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCce----EEEEeC--------------CcchHHHHHhhc--------
Q 009212 341 STSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR----SMVVTG--------------GFRQKTQLENLQ-------- 394 (540)
Q Consensus 341 ~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~----v~~l~G--------------g~~~~~q~~~l~-------- 394 (540)
..-.+|++|||+|+|..|.++.+.+.++......+. ...-+| ........+.+.
T Consensus 33 QGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~F 112 (442)
T PF06862_consen 33 QGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCF 112 (442)
T ss_pred cCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceE
Confidence 345689999999999999999998887753200000 000011 011111222221
Q ss_pred -----------------CCCcEEEeChHHHHHHHHh------ccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCC
Q 009212 395 -----------------EGVDVLIATPGRFMFLIKE------GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451 (540)
Q Consensus 395 -----------------~~~dIlVaTP~rL~~ll~~------~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~ 451 (540)
..+|||||+|-.|...+.. ....|++|.++|+|.||.|+ |+.|+.+..++++++.
T Consensus 113 rlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~--MQNW~Hv~~v~~~lN~ 190 (442)
T PF06862_consen 113 RLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL--MQNWEHVLHVFEHLNL 190 (442)
T ss_pred EEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH--HhhHHHHHHHHHHhcc
Confidence 1379999999999988874 45679999999999999998 8999999999998853
Q ss_pred C------------------------CcEEEEeccCCHHHHHHHHHhCCCceEE---eCCC-----ccccCCCceeEEEEc
Q 009212 452 T------------------------AQYLFVTATLPVEIYNKLVEVFPDCKVV---MGPG-----MHRISPGLEEFLVDC 499 (540)
Q Consensus 452 ~------------------------~Q~ll~SATlp~~i~~~l~~~l~~~~~i---~~~~-----~~~~~~~I~q~~v~~ 499 (540)
. +|+|++|+...+++..++.+.+.|.... .... .......++|.+..+
T Consensus 191 ~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~ 270 (442)
T PF06862_consen 191 QPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRF 270 (442)
T ss_pred CCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEe
Confidence 1 7999999999999999999888774321 1111 234556788999887
Q ss_pred CCCCCCCCchhhHhhhHHHHHHHHHH-hCCCCcEEEEecc
Q 009212 500 SGDQESDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNK 538 (540)
Q Consensus 500 ~~~~~~~~~~~~~~~~K~~~L~~ll~-~~~~~rtIIFcnS 538 (540)
+... ....++.+|......++..+. ......+||||+|
T Consensus 271 ~~~s-~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPS 309 (442)
T PF06862_consen 271 DCSS-PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPS 309 (442)
T ss_pred cCCC-cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecc
Confidence 6532 345567778887777777777 6677899999987
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.33 E-value=7.4e-11 Score=133.21 Aligned_cols=140 Identities=26% Similarity=0.362 Sum_probs=100.2
Q ss_pred HHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHH
Q 009212 280 IESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (540)
Q Consensus 280 l~~L~~~-gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa 358 (540)
.+.+++. || .|...|+-+...++.|+++-+.||||.|||..-++..+-.. ..+.+++||+||..|+
T Consensus 72 ~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a------------~kgkr~yii~PT~~Lv 138 (1187)
T COG1110 72 EEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA------------KKGKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH------------hcCCeEEEEecCHHHH
Confidence 3344444 55 89999999999999999999999999999965544443322 2357899999999999
Q ss_pred HHHHHHHHhhhcCCCCceEEE-EeCCcchH---HHHHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 359 SQVLSNCRSLSKCGVPFRSMV-VTGGFRQK---TQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 359 ~Qi~~~l~~l~~~~~~l~v~~-l~Gg~~~~---~q~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
.|+++.+.+++.....+.+.+ .++..+.. +-.+++.+ +.||+|+|..-|..-+.. +.--+++++++|++|.++
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHH
Confidence 999999999986322344444 44443333 33445554 589999998766544432 111368899999999987
Q ss_pred C
Q 009212 434 N 434 (540)
Q Consensus 434 ~ 434 (540)
.
T Consensus 217 k 217 (1187)
T COG1110 217 K 217 (1187)
T ss_pred h
Confidence 4
No 101
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.33 E-value=1.7e-11 Score=142.80 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=104.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH----HHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEE
Q 009212 276 SDYMIESLKRQNFLRPSQIQAMAFP----PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVIL 351 (540)
Q Consensus 276 ~~~ll~~L~~~gf~~ptpiQ~~aip----~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL 351 (540)
.+.+...+...||+ +++.|.+.+. .+..|+++++.||||+|||++|++|++.... .+.++||.
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------~~~~vvi~ 298 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------TEKPVVIS 298 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------------CCCeEEEE
Confidence 34667777788986 8999998666 4567899999999999999999999987654 13479999
Q ss_pred ccCHHHHHHHHH-HHHhhhcC-CCCceEEEEeCCcchH---------------HH-------------------------
Q 009212 352 APTAELASQVLS-NCRSLSKC-GVPFRSMVVTGGFRQK---------------TQ------------------------- 389 (540)
Q Consensus 352 ~PtreLa~Qi~~-~l~~l~~~-~~~l~v~~l~Gg~~~~---------------~q------------------------- 389 (540)
+||++|..|+.. .+..+.+. +.++++.++.|+.++- ..
T Consensus 299 t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~ 378 (850)
T TIGR01407 299 TNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNL 378 (850)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccC
Confidence 999999999865 56655442 3457777777764210 00
Q ss_pred -------HHh------------------------hcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 390 -------LEN------------------------LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 390 -------~~~------------------------l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
+.. ....+||||+....|+.-+......+...++|||||||+|.
T Consensus 379 ~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~ 453 (850)
T TIGR01407 379 KGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLP 453 (850)
T ss_pred CCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHH
Confidence 000 01226899999988876654433334556899999999986
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.1e-10 Score=118.59 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=140.5
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 290 ~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
++|+.|+.+-..++ ..+++|+.|-||+|||.. +.+.++..+. .|.++.|..|....|.+++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~-----------~G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN-----------QGGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh-----------cCCeEEEecCcccchHHHHHHH
Confidence 78999998876654 558999999999999986 4455555543 3778999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
+.-+. +..+.+++|+....-+ .+++|+|..+|+.+.+ .+++|||||+|.+- ..-.+.++..
T Consensus 165 k~aF~---~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP--~~~d~~L~~A 225 (441)
T COG4098 165 KQAFS---NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFP--FSDDQSLQYA 225 (441)
T ss_pred HHhhc---cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEecccccc--ccCCHHHHHH
Confidence 88653 4688999998875432 5899999988877655 46789999999874 2222333333
Q ss_pred HH-hCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCC-ccccCCCceeEEEEcCCCCCCCCchhhHhhhHHH-HHHH
Q 009212 446 IS-SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQESDKTPETAFLNKKS-ALLQ 522 (540)
Q Consensus 446 l~-~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~-~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~-~L~~ 522 (540)
.+ ......-+|.+|||.+.++...+..- +...+..+. .|.-+..+ -.++.+..-. + .....|+. .|+.
T Consensus 226 v~~ark~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpv-Pkf~w~~~~~---k---~l~r~kl~~kl~~ 296 (441)
T COG4098 226 VKKARKKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPV-PKFVWIGNWN---K---KLQRNKLPLKLKR 296 (441)
T ss_pred HHHhhcccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCC-CceEEeccHH---H---HhhhccCCHHHHH
Confidence 33 23345678999999998876655432 222222222 23333222 2344444311 0 00012333 6777
Q ss_pred HHHhC--CCCcEEEEecccC
Q 009212 523 LIEKS--PVSKTIVFCNKKS 540 (540)
Q Consensus 523 ll~~~--~~~rtIIFcnSr~ 540 (540)
+|+++ ...+++||+++.+
T Consensus 297 ~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 297 WLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred HHHHHHhcCCcEEEEecchH
Confidence 88764 4579999999863
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=6.5e-12 Score=142.49 Aligned_cols=129 Identities=22% Similarity=0.268 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|+++|...--.+.. --|+.++||.|||++|.+|++...+. +..+.||+|+++||.|..+.+..+.
T Consensus 82 ~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~------------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALT------------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhc------------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 678888765444444 45889999999999999999876643 3449999999999999999999999
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhc-cccC-----CCccEEEEeCCcccCCC
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG-ILQL-----INLRCAILDEVDILFND 435 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~-~~~l-----~~i~~LVlDEad~ll~d 435 (540)
.+ .++++.++.++....+....+ .|||+++||+.| .++|+.+ .+.. ..+.++||||||.|+-|
T Consensus 148 ~~-lGlsv~~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD 217 (908)
T PRK13107 148 EF-LGLTVGINVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID 217 (908)
T ss_pred Hh-cCCeEEEecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc
Confidence 87 789999999988765433322 589999999999 8888876 2333 67899999999998753
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.27 E-value=3e-11 Score=135.66 Aligned_cols=185 Identities=20% Similarity=0.228 Sum_probs=137.1
Q ss_pred CCCHHHH-HHHHHCCCCCCcHHHHHHH--HHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEE
Q 009212 274 GCSDYMI-ESLKRQNFLRPSQIQAMAF--PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (540)
Q Consensus 274 ~L~~~ll-~~L~~~gf~~ptpiQ~~ai--p~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLI 350 (540)
.+++.+. -..+..|..+++.+|.+++ |.++.++|+|..+||+.|||++.-+-++..++.. +..++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-----------rr~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-----------RRNVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-----------hhceeE
Confidence 3444444 3455568999999999987 6688999999999999999999999998887654 345899
Q ss_pred EccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh--ccccCCCccEEEEeC
Q 009212 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDE 428 (540)
Q Consensus 351 L~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~--~~~~l~~i~~LVlDE 428 (540)
+.|...-+..-...+..+... .++.+-..+|....... .+.-++.|||-++-..++.. ..-.+..+.++|+||
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~-~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSID-LGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred ecceeehhHHHHhhhhhhccc-cCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 999988887777777776553 56777777766654432 23358999999987766543 223466789999999
Q ss_pred CcccCCCCCHHHHHHHHHHhC-----CCCCcEEEEeccCCHHHHHHHHHhCCCc
Q 009212 429 VDILFNDEDFEVALQSLISSS-----PVTAQYLFVTATLPVEIYNKLVEVFPDC 477 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l-----~~~~Q~ll~SATlp~~i~~~l~~~l~~~ 477 (540)
.|.+. |.+....++.++..+ ....|+|++|||+|+- .++..|+...
T Consensus 350 lhmi~-d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~ 400 (1008)
T KOG0950|consen 350 LHMIG-DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAF 400 (1008)
T ss_pred eeeee-ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhh
Confidence 99998 788888877776643 2235799999999854 3466666543
No 105
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.25 E-value=7.6e-11 Score=131.61 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=91.4
Q ss_pred HHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh-c-CCCCceE
Q 009212 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS-K-CGVPFRS 377 (540)
Q Consensus 300 p~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~-~-~~~~l~v 377 (540)
..+..++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+. + .+.++++
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~----------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER----------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc----------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 4456788999999999999999999999887532 24689999999999999999988876 3 1245666
Q ss_pred EEEeCCcchH----------------------------------------------------------------------
Q 009212 378 MVVTGGFRQK---------------------------------------------------------------------- 387 (540)
Q Consensus 378 ~~l~Gg~~~~---------------------------------------------------------------------- 387 (540)
.++.|+.++-
T Consensus 81 ~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~~~ 160 (636)
T TIGR03117 81 GFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVTLA 160 (636)
T ss_pred EEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhhcc
Confidence 6665543210
Q ss_pred ----------HHHHhh---cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 388 ----------TQLENL---QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 388 ----------~q~~~l---~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
...+.. ...+||||++...|...++...-.+...++|||||||++.
T Consensus 161 ~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~ 219 (636)
T TIGR03117 161 IREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFE 219 (636)
T ss_pred ccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchH
Confidence 000000 1347999999998887665543456778999999999986
No 106
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.24 E-value=9e-11 Score=138.90 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHHH----cC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVV----EG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 289 ~~ptpiQ~~aip~il----~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
..++++|.+||..+. .| +..+++++||||||+++ +.++.++... ....++|||+|+++|+.|..+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~---------~~~~rVLfLvDR~~L~~Qa~~ 481 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA---------KRFRRILFLVDRSALGEQAED 481 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc---------CccCeEEEEecHHHHHHHHHH
Confidence 358999999998765 33 68999999999999884 3455555432 124589999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh-----ccccCCCccEEEEeCCcccCC----
Q 009212 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-----GILQLINLRCAILDEVDILFN---- 434 (540)
Q Consensus 364 ~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~-----~~~~l~~i~~LVlDEad~ll~---- 434 (540)
.++.+... .......+++....... .......|+|+|...|...+.. ....+..+++||+||||+-..
T Consensus 482 ~F~~~~~~-~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~ 558 (1123)
T PRK11448 482 AFKDTKIE-GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKE 558 (1123)
T ss_pred HHHhcccc-cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccc
Confidence 99886431 11111112211111111 1123468999999998766432 124567889999999999631
Q ss_pred ----CC------CHHHHHHHHHHhCCCCCcEEEEeccCCH
Q 009212 435 ----DE------DFEVALQSLISSSPVTAQYLFVTATLPV 464 (540)
Q Consensus 435 ----d~------~f~~~i~~Il~~l~~~~Q~ll~SATlp~ 464 (540)
+. .+...++.++.++. .-.|+||||.-.
T Consensus 559 ~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r 596 (1123)
T PRK11448 559 MSEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPAL 596 (1123)
T ss_pred cccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCcc
Confidence 01 12456677777663 567999999864
No 107
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.22 E-value=5.4e-11 Score=133.13 Aligned_cols=159 Identities=24% Similarity=0.318 Sum_probs=115.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|..+|.+.+..+-.+...+|+|||.+|||++- ..++...+.. ...--+|+++||++|++|+...+....
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRe---------sD~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRE---------SDSDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhh---------cCCCEEEEecchHHHhhhhhHHHHHhh
Confidence 588999999999999999999999999999863 3445554443 234469999999999999998887765
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh---ccccCCCccEEEEeCCcccCCCCCHHHHHHHHH
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE---GILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~---~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il 446 (540)
....-.+...+.|....+.++. .-.|+|+|+-|+.+..+|.. ..-...+++|+|+||+|.+.. +.-.-..+.++
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~-~ed~l~~Eqll 657 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN-EEDGLLWEQLL 657 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc-cccchHHHHHH
Confidence 4323344455555555444332 12599999999999988866 345678999999999999873 32222223333
Q ss_pred HhCCCCCcEEEEeccCC
Q 009212 447 SSSPVTAQYLFVTATLP 463 (540)
Q Consensus 447 ~~l~~~~Q~ll~SATlp 463 (540)
-+ ..+.++++|||+.
T Consensus 658 ~l--i~CP~L~LSATig 672 (1330)
T KOG0949|consen 658 LL--IPCPFLVLSATIG 672 (1330)
T ss_pred Hh--cCCCeeEEecccC
Confidence 22 2688999999994
No 108
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.19 E-value=1.9e-10 Score=133.15 Aligned_cols=132 Identities=17% Similarity=0.329 Sum_probs=95.9
Q ss_pred CCCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
.|| ++++-|.+.... +..++++++.|+||+|||+||++|++... .+.++||++||++|++|+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------------DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHH
Confidence 366 689999885443 44678899999999999999999988643 245799999999999999
Q ss_pred -HHHHHhhhcCCCCceEEEEeCCcchHHH-----------------------------------------------HHhh
Q 009212 362 -LSNCRSLSKCGVPFRSMVVTGGFRQKTQ-----------------------------------------------LENL 393 (540)
Q Consensus 362 -~~~l~~l~~~~~~l~v~~l~Gg~~~~~q-----------------------------------------------~~~l 393 (540)
.+.+..+.+. .++++.++.|+.++-.. +..+
T Consensus 308 ~~~~i~~l~~~-~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i 386 (820)
T PRK07246 308 MAEEVKAIQEV-FHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQL 386 (820)
T ss_pred HHHHHHHHHHh-cCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHh
Confidence 4777777764 56667777766421000 0000
Q ss_pred ------------------------cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 394 ------------------------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 394 ------------------------~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
...+||||+.-.-|...+..+. .+...++|||||||++.
T Consensus 387 ~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 387 KHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred hccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 0126899999987777664433 35678999999999986
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.9e-09 Score=121.68 Aligned_cols=219 Identities=21% Similarity=0.253 Sum_probs=138.9
Q ss_pred CCCcHHHHHHHHHHHcC----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
..+++-|+.++..+... .-.++.+-||||||.+|+=.+-..+.. |..+|||+|-.+|-.|+.+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~------------GkqvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ------------GKQVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc------------CCEEEEEeccccchHHHHHH
Confidence 46788999999998765 578999999999999997666655543 56799999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHH----HHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC--CCCC-
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQ----LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF--NDED- 437 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q----~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll--~d~~- 437 (540)
++..+. .++.+++++.+..+. .+.....+.|+|+|=-.| ...+.++.++||||=|--. ++.+
T Consensus 265 f~~rFg----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 265 FKARFG----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHhC----CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCC
Confidence 998754 466777776654433 333335689999996655 5678899999999999532 1111
Q ss_pred --HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhh
Q 009212 438 --FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLN 515 (540)
Q Consensus 438 --f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~ 515 (540)
...++-.+..+. .++++|+-|||..-+-...+ .-..+..+..........-.+..+++......... . . +
T Consensus 334 rYhARdvA~~Ra~~-~~~pvvLgSATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~-~-l-- 405 (730)
T COG1198 334 RYHARDVAVLRAKK-ENAPVVLGSATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-R-S-L-- 405 (730)
T ss_pred CcCHHHHHHHHHHH-hCCCEEEecCCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccC-c-c-C--
Confidence 333444444433 47899999999885543322 12223333222111111122344555544221100 0 0 1
Q ss_pred HHHHHHHHHHh--CCCCcEEEEeccc
Q 009212 516 KKSALLQLIEK--SPVSKTIVFCNKK 539 (540)
Q Consensus 516 K~~~L~~ll~~--~~~~rtIIFcnSr 539 (540)
-..|++.+++ ..++|+|||.|.|
T Consensus 406 -S~~Ll~~i~~~l~~geQ~llflnRR 430 (730)
T COG1198 406 -SPALLEAIRKTLERGEQVLLFLNRR 430 (730)
T ss_pred -CHHHHHHHHHHHhcCCeEEEEEccC
Confidence 1233333332 2457999999986
No 110
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=1.8e-10 Score=131.70 Aligned_cols=223 Identities=17% Similarity=0.230 Sum_probs=149.6
Q ss_pred CCCCcHHHHHHHHHHHc-CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 288 FLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 288 f~~ptpiQ~~aip~il~-G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
|...+|+|.+.++.+.+ +.++++.+|+|||||.+..++++.. ....+++++.|.-+.+..++..+.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~-------------~~~~~~vyi~p~~~i~~~~~~~w~ 1207 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP-------------DTIGRAVYIAPLEEIADEQYRDWE 1207 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC-------------ccceEEEEecchHHHHHHHHHHHH
Confidence 44559999999998764 5689999999999999999888761 235679999999999999998887
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCC-----HHHH
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED-----FEVA 441 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~-----f~~~ 441 (540)
+-.....+.++..++|........ ....+|+|+||+++..+ + ..+.+++.|.||+|.+.+-.+ ...
T Consensus 1208 ~~f~~~~G~~~~~l~ge~s~~lkl---~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S- 1278 (1674)
T KOG0951|consen 1208 KKFSKLLGLRIVKLTGETSLDLKL---LQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS- 1278 (1674)
T ss_pred HhhccccCceEEecCCccccchHH---hhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-
Confidence 755545788999999988776433 23468999999998666 2 567899999999998862111 112
Q ss_pred HHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHH
Q 009212 442 LQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALL 521 (540)
Q Consensus 442 i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~ 521 (540)
++.|-.++-+..+++.+|..+...- . +.-.-....+.+.+.....+..|+-.-+....- ....+..-...+.
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lana~-d-~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~------~~~~~am~~~~~~ 1350 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLANAR-D-LIGASSSGVFNFSPSVRPVPLEIHIQSVDISHF------ESRMLAMTKPTYT 1350 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhccch-h-hccccccceeecCcccCCCceeEEEEEeccchh------HHHHHHhhhhHHH
Confidence 6666667777889999998886431 1 111123345555565555555554444433321 1111111111222
Q ss_pred HHHHh-CCCCcEEEEecccC
Q 009212 522 QLIEK-SPVSKTIVFCNKKS 540 (540)
Q Consensus 522 ~ll~~-~~~~rtIIFcnSr~ 540 (540)
.+.+. ...+++|||+++|.
T Consensus 1351 ai~~~a~~~k~~~vf~p~rk 1370 (1674)
T KOG0951|consen 1351 AIVRHAGNRKPAIVFLPTRK 1370 (1674)
T ss_pred HHHHHhcCCCCeEEEeccch
Confidence 22222 24679999999873
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.15 E-value=3.1e-09 Score=122.88 Aligned_cols=182 Identities=24% Similarity=0.257 Sum_probs=137.0
Q ss_pred CCcHHHHHHHHHHHc----C--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVE----G--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 290 ~ptpiQ~~aip~il~----G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
.-|+=|..||..+.. + .|=++|+--|-|||.+++=+++..+ ..+.++.+||||--||+|.++
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV------------~~GKQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV------------MDGKQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh------------cCCCeEEEEcccHHhHHHHHH
Confidence 469999999998764 3 4999999999999999877776555 346899999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHhh---cC-CCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHH
Q 009212 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENL---QE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439 (540)
Q Consensus 364 ~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~ 439 (540)
.+++-+. +.++++..+.-=...+++...+ .+ ..||||+|-.-| .+.+.+.++.+|||||=|++. ....
T Consensus 662 tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFG--Vk~K 733 (1139)
T COG1197 662 TFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFG--VKHK 733 (1139)
T ss_pred HHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcC--ccHH
Confidence 9998766 4788888877555555554443 33 489999996543 457789999999999999985 5566
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEE
Q 009212 440 VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497 (540)
Q Consensus 440 ~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v 497 (540)
+.+..+. .+.-++-+|||.=+.-.+....-+++..+|.++.....+ |+-++.
T Consensus 734 EkLK~Lr----~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p--V~T~V~ 785 (1139)
T COG1197 734 EKLKELR----ANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP--VKTFVS 785 (1139)
T ss_pred HHHHHHh----ccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc--eEEEEe
Confidence 6666655 456689999996444445666677888888776544443 444433
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.13 E-value=4.1e-10 Score=129.20 Aligned_cols=180 Identities=20% Similarity=0.250 Sum_probs=117.7
Q ss_pred CCcHHHHHHHHHHHcC---C-cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG---K-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G---~-dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
...+.|..++..++.. . .+++.||||.|||.+.+.+++..+... .....+++++.|++.+++++++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~--------~~~~~r~i~vlP~~t~ie~~~~r~ 266 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK--------IKLKSRVIYVLPFRTIIEDMYRRA 266 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc--------ccccceEEEEccHHHHHHHHHHHH
Confidence 3488999999887753 4 788999999999999999998876542 125789999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHh-----h---------cCCCcEEEeChHHHHHHHHh-cccc-C--CCccEEEEe
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN-----L---------QEGVDVLIATPGRFMFLIKE-GILQ-L--INLRCAILD 427 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~-----l---------~~~~dIlVaTP~rL~~ll~~-~~~~-l--~~i~~LVlD 427 (540)
+...... .+.....+|.......... . .....++++||..+....-. .... + -....+|||
T Consensus 267 ~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlD 345 (733)
T COG1203 267 KEIFGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILD 345 (733)
T ss_pred Hhhhccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhc
Confidence 9876431 1111112322221111000 0 01245667777666542211 1111 1 124579999
Q ss_pred CCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHHHHHHHhCCCceE
Q 009212 428 EVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKV 479 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~ 479 (540)
|+|.+- +......+..++..+ .....+|++|||+|+.+.+.+...+.+...
T Consensus 346 E~h~~~-~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~ 397 (733)
T COG1203 346 EVHLYA-DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGRE 397 (733)
T ss_pred cHHhhc-ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccc
Confidence 999997 432444555554443 346889999999999999999888865444
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.08 E-value=1.5e-09 Score=123.37 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=98.1
Q ss_pred CcHHHHHHHHHHH----c------CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH
Q 009212 291 PSQIQAMAFPPVV----E------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (540)
Q Consensus 291 ptpiQ~~aip~il----~------G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q 360 (540)
+.+.|.+|+..+. . .+..++..+||||||+..+..+...+ .. ...+++|||+|+++|..|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~---------~~~~~vl~lvdR~~L~~Q 308 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL---------LKNPKVFFVVDRRELDYQ 308 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh---------cCCCeEEEEECcHHHHHH
Confidence 7888999987753 2 25799999999999988655554333 21 246789999999999999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhc--cccCCCc-cEEEEeCCcccCCCC
Q 009212 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG--ILQLINL-RCAILDEVDILFNDE 436 (540)
Q Consensus 361 i~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~--~~~l~~i-~~LVlDEad~ll~d~ 436 (540)
+.+.+..++.. .. .+..........+. ....|+|+|...|...+... ......- -+||+||||+.. ..
T Consensus 309 ~~~~f~~~~~~--~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~-~~ 380 (667)
T TIGR00348 309 LMKEFQSLQKD--CA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ-YG 380 (667)
T ss_pred HHHHHHhhCCC--CC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc-ch
Confidence 99999987531 01 11112222222332 23689999999998644321 1111111 179999999976 22
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 437 DFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 437 ~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
.+...+. ..++ ...+++||||.-
T Consensus 381 ~~~~~l~---~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 381 ELAKNLK---KALK-NASFFGFTGTPI 403 (667)
T ss_pred HHHHHHH---hhCC-CCcEEEEeCCCc
Confidence 3333332 3444 578999999984
No 114
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.01 E-value=4.9e-09 Score=107.63 Aligned_cols=73 Identities=27% Similarity=0.284 Sum_probs=57.6
Q ss_pred CCcHHHHH----HHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 290 RPSQIQAM----AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 290 ~ptpiQ~~----aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++..+..... .....+++|+++|..+..|....+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHHHHH
Confidence 36999999 44556678999999999999999999999987764321 012347999999999999887777
Q ss_pred Hhh
Q 009212 366 RSL 368 (540)
Q Consensus 366 ~~l 368 (540)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 115
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.01 E-value=4.9e-09 Score=107.63 Aligned_cols=73 Identities=27% Similarity=0.284 Sum_probs=57.6
Q ss_pred CCcHHHHH----HHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 290 RPSQIQAM----AFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 290 ~ptpiQ~~----aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|+|.|.+ ++..+..|.++++.||||+|||++|++|++..+..... .....+++|+++|..+..|....+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~------~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE------RIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc------cccccceeEEeccHHHHHHHHHHH
Confidence 36999999 44556678999999999999999999999987764321 012347999999999999887777
Q ss_pred Hhh
Q 009212 366 RSL 368 (540)
Q Consensus 366 ~~l 368 (540)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 116
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.99 E-value=5.3e-09 Score=122.94 Aligned_cols=133 Identities=19% Similarity=0.255 Sum_probs=93.3
Q ss_pred CCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 287 gf~~ptpiQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
|| ++++-|.+.... +..++++++.|+||+|||++||+|++..... .+.++||-++|+.|..|+.
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-----------~~~~vvIsT~T~~LQ~Ql~ 322 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK-----------KEEPVVISTYTIQLQQQLL 322 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc-----------cCCeEEEEcCCHHHHHHHH
Confidence 45 789999986554 3467899999999999999999999876543 2457999999999999987
Q ss_pred HH----HHhhhcCCCCceEEEEeCCcchH---------------HH--------------------------------HH
Q 009212 363 SN----CRSLSKCGVPFRSMVVTGGFRQK---------------TQ--------------------------------LE 391 (540)
Q Consensus 363 ~~----l~~l~~~~~~l~v~~l~Gg~~~~---------------~q--------------------------------~~ 391 (540)
.. ++++. +.++++.++.|..++- .+ +.
T Consensus 323 ~kDiP~L~~~~--~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~ 400 (928)
T PRK08074 323 EKDIPLLQKIF--PFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWN 400 (928)
T ss_pred HhhHHHHHHHc--CCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHH
Confidence 62 34433 2456666666553200 00 00
Q ss_pred h--------------------------hcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 392 N--------------------------LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 392 ~--------------------------l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
. -...+||||+.-.-|+..+..+.-.+...+++||||||++.
T Consensus 401 ~i~~~~~~c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 401 RIASDGESDGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred HhhccCcccCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 0 01126899999998876654333345678999999999986
No 117
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.89 E-value=1.1e-08 Score=93.53 Aligned_cols=135 Identities=24% Similarity=0.288 Sum_probs=81.8
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|+=.++-..+|+|||--.+.-++...... +-++|||.|||.++..+.+.++.+ ++++..-.-+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-----------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~ 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-----------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARM 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-----------T--EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-----------cCeEEEecccHHHHHHHHHHHhcC-----CcccCceeee
Confidence 345567888999999998776666655443 557999999999999999988754 2332211100
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCC---HHHHHHHHHHhCCCCCcEEEEec
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED---FEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~---f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
. ....+.-|-|.|...+.+.+.+ ...+.+.+++|+||||.+ |.. +.-.+..+- .. ....+|++||
T Consensus 67 ---~----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~--Dp~sIA~rg~l~~~~-~~-g~~~~i~mTA 134 (148)
T PF07652_consen 67 ---R----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT--DPTSIAARGYLRELA-ES-GEAKVIFMTA 134 (148)
T ss_dssp -----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT----SHHHHHHHHHHHHHH-HT-TS-EEEEEES
T ss_pred ---c----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC--CHHHHhhheeHHHhh-hc-cCeeEEEEeC
Confidence 0 1123346788999988877765 555789999999999986 332 222222221 11 2467999999
Q ss_pred cCCHHH
Q 009212 461 TLPVEI 466 (540)
Q Consensus 461 Tlp~~i 466 (540)
|.|-..
T Consensus 135 TPPG~~ 140 (148)
T PF07652_consen 135 TPPGSE 140 (148)
T ss_dssp S-TT--
T ss_pred CCCCCC
Confidence 998553
No 118
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.80 E-value=2.1e-07 Score=106.81 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=124.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCC
Q 009212 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374 (540)
Q Consensus 295 Q~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~ 374 (540)
..+.+.++....-++++++||||||...=..+++... ....++.+.-|.|--|..++..+-+......+
T Consensus 55 ~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 55 RDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----------GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3444555666778999999999999753333333221 23446788889987777777776654432223
Q ss_pred ceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCH-HHHHHHHHHhCCCCC
Q 009212 375 FRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDF-EVALQSLISSSPVTA 453 (540)
Q Consensus 375 l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f-~~~i~~Il~~l~~~~ 453 (540)
-.|++-+-..+ .....-.|-+.|-|.|+..+.... .|+.++++||||||.=.=+-.| .-.+..++...+..-
T Consensus 124 ~~VGY~iRfe~------~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFES------KVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEeec------cCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 33333221110 011234799999999999988754 4899999999999963201112 223344455556568
Q ss_pred cEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEE
Q 009212 454 QYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTI 533 (540)
Q Consensus 454 Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtI 533 (540)
.+|++|||+..+ .+..+|.++-++..++.. ..++-+|......+ ......+...+++......+.+|
T Consensus 197 KiIimSATld~~---rfs~~f~~apvi~i~GR~---fPVei~Y~~~~~~d-------~~l~~ai~~~v~~~~~~~~GdIL 263 (845)
T COG1643 197 KLIIMSATLDAE---RFSAYFGNAPVIEIEGRT---YPVEIRYLPEAEAD-------YILLDAIVAAVDIHLREGSGSIL 263 (845)
T ss_pred eEEEEecccCHH---HHHHHcCCCCEEEecCCc---cceEEEecCCCCcc-------hhHHHHHHHHHHHhccCCCCCEE
Confidence 899999999876 367788875555444321 22344443322211 10122333333333334467899
Q ss_pred EEec
Q 009212 534 VFCN 537 (540)
Q Consensus 534 IFcn 537 (540)
||.+
T Consensus 264 vFLp 267 (845)
T COG1643 264 VFLP 267 (845)
T ss_pred EECC
Confidence 9976
No 119
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.79 E-value=6.3e-08 Score=98.28 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=84.2
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
..+..|++-.+|.|||+..+..+. .+.... .......+|||||. .+..|...++.+++.. ..+++..+.|.
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~------~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~-~~~~v~~~~~~ 94 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEF------PQRGEKKTLIVVPS-SLLSQWKEEIEKWFDP-DSLRVIIYDGD 94 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCC------TTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSS
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhcc------ccccccceeEeecc-chhhhhhhhhcccccc-ccccccccccc
Confidence 346789999999999987654443 333221 01111249999999 8889999999998752 25677777666
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHh---ccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKE---GILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~---~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
..............+|+|+|.+.+...... ..+.-...++||+||+|.+- + ........+..+. ....+++||
T Consensus 95 ~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k-~--~~s~~~~~l~~l~-~~~~~lLSg 170 (299)
T PF00176_consen 95 SERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLK-N--KDSKRYKALRKLR-ARYRWLLSG 170 (299)
T ss_dssp CHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGT-T--TTSHHHHHHHCCC-ECEEEEE-S
T ss_pred cccccccccccccceeeeccccccccccccccccccccccceeEEEecccccc-c--ccccccccccccc-cceEEeecc
Confidence 522222222334579999999998811000 01111347899999999995 2 2222333333354 677889999
Q ss_pred cC
Q 009212 461 TL 462 (540)
Q Consensus 461 Tl 462 (540)
|.
T Consensus 171 TP 172 (299)
T PF00176_consen 171 TP 172 (299)
T ss_dssp S-
T ss_pred cc
Confidence 96
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=5.5e-08 Score=111.10 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=100.7
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.| ..|+++|...--.+. .--|+...||+|||+++.+|++-..+. +..+.|++|+..||.|-++.+
T Consensus 79 lG-m~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~------------G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 79 MG-MRHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALS------------GKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred hC-CCcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHc------------CCCEEEEeCCHHHHHHHHHHH
Confidence 35 478888876644443 455788999999999999999866543 556999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhccc------cCCCccEEEEeCCcccC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGIL------QLINLRCAILDEVDILF 433 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~~------~l~~i~~LVlDEad~ll 433 (540)
..+..+ .++++.+++++....+....+. |||+++|..-| .++|+.+.. ....+.+.||||+|.++
T Consensus 144 ~~l~~~-lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 144 RPLYEF-LGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HHHhcc-cCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 999886 7899999998877666554444 89999999886 244443321 23678899999999876
No 121
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.72 E-value=2.1e-07 Score=106.40 Aligned_cols=64 Identities=33% Similarity=0.479 Sum_probs=52.0
Q ss_pred CCCCCcHHHHHHHHHHH---cC------CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 287 NFLRPSQIQAMAFPPVV---EG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il---~G------~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
|| ++++-|.+....+. .+ +.++|.|+||+|||+|||+|++...... +.++||-+.|+.|
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~-----------~k~vVIST~T~~L 90 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE-----------KKKLVISTATVAL 90 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc-----------CCeEEEEcCCHHH
Confidence 56 68999998665543 33 6788999999999999999998766532 4579999999999
Q ss_pred HHHHH
Q 009212 358 ASQVL 362 (540)
Q Consensus 358 a~Qi~ 362 (540)
-.|+.
T Consensus 91 QeQL~ 95 (697)
T PRK11747 91 QEQLV 95 (697)
T ss_pred HHHHH
Confidence 99985
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.69 E-value=7.2e-08 Score=107.96 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=104.0
Q ss_pred CCCcHHHHHHHHHHH----cCC-cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 289 ~~ptpiQ~~aip~il----~G~-dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
..++.+|..||..+. .|+ -+|+++.||+|||..+ +.++.+|.+.. .-.++|+|+-++.|+.|.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~---------~~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG---------WVKRVLFLADRNALVDQAYG 233 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc---------hhheeeEEechHHHHHHHHH
Confidence 468999999997754 454 4999999999999884 56667776542 34579999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-----cccCCCccEEEEeCCcccCCCCCH
Q 009212 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-----ILQLINLRCAILDEVDILFNDEDF 438 (540)
Q Consensus 364 ~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-----~~~l~~i~~LVlDEad~ll~d~~f 438 (540)
.+..+...+...+...-..+. ..++|.|+|...+...+... .+....++++|+||||+=+
T Consensus 234 af~~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----- 298 (875)
T COG4096 234 AFEDFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----- 298 (875)
T ss_pred HHHHhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-----
Confidence 988886543322222211111 14789999999998877654 3345568999999999854
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 439 EVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 439 ~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
....+.|+.++..-.| +++||+-.++
T Consensus 299 ~~~~~~I~dYFdA~~~--gLTATP~~~~ 324 (875)
T COG4096 299 YSEWSSILDYFDAATQ--GLTATPKETI 324 (875)
T ss_pred HhhhHHHHHHHHHHHH--hhccCccccc
Confidence 2233355555543333 3388876544
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.67 E-value=6.1e-07 Score=105.36 Aligned_cols=154 Identities=19% Similarity=0.228 Sum_probs=102.5
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 290 ~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.+.++|.+++.-+. .|.+.|++-..|.|||+..+ .++..+... ......+|||||. .+..|..+.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~--------~~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEY--------RGITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHh--------cCCCCCEEEEeCh-HHHHHHHHHH
Confidence 68889999987654 67899999999999998643 334444321 1123358999996 5667888888
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHh---hcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLEN---LQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i 442 (540)
.+++ +.+++..++|.......... .....+|+|+|.+.+..... .+.--..++|||||||++- +....+
T Consensus 239 ~kw~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIK---N~~Skl 310 (1033)
T PLN03142 239 RRFC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIK---NENSLL 310 (1033)
T ss_pred HHHC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccC---CHHHHH
Confidence 8875 45677777776543332211 12357999999998764322 2222346799999999986 233344
Q ss_pred HHHHHhCCCCCcEEEEeccC
Q 009212 443 QSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 443 ~~Il~~l~~~~Q~ll~SATl 462 (540)
..++..+. ....+++|+|.
T Consensus 311 skalr~L~-a~~RLLLTGTP 329 (1033)
T PLN03142 311 SKTMRLFS-TNYRLLITGTP 329 (1033)
T ss_pred HHHHHHhh-cCcEEEEecCC
Confidence 45555554 34568899996
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.67 E-value=1.3e-07 Score=105.75 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=103.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|. .|+++|....-.++.|+ |+...||+|||++..+|++...+. +..+.|++|+..||.|-++.+
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~------------G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ------------GRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc------------CCCeEEEcCCHHHHHHHHHHH
Confidence 354 79999999988888764 678999999999999999876643 556999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhcc------ccCCCccEEEEeCCcccC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~~------~~l~~i~~LVlDEad~ll 433 (540)
..+..+ .++++.++.++....+....+ .|||+.+|..-|- ++|+.+. .....+.+.||||+|.++
T Consensus 140 ~~ly~~-LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 140 GPLYEA-LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred HHHHHh-cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999886 789999999888766554444 4899999997764 3444322 123557899999999876
No 125
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=1.4e-07 Score=107.42 Aligned_cols=129 Identities=21% Similarity=0.271 Sum_probs=102.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
|. .|+++|..+--++..|+ |+...||+|||++..+|++...+. +..+-|++||..||.|-++.+.
T Consensus 78 g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~------------G~~v~vvT~neyLA~Rd~e~~~ 142 (796)
T PRK12906 78 GL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT------------GKGVHVVTVNEYLSSRDATEMG 142 (796)
T ss_pred CC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc------------CCCeEEEeccHHHHHhhHHHHH
Confidence 54 79999988876676776 889999999999999999877653 5569999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhccc------cCCCccEEEEeCCcccC
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL------QLINLRCAILDEVDILF 433 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~~~------~l~~i~~LVlDEad~ll 433 (540)
.+..+ .++++.++.++....+....+ .|||+.+|...|- ++|+.+.. ....+.+.||||+|.++
T Consensus 143 ~~~~~-LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 143 ELYRW-LGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHHh-cCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 99886 789999999887766554444 4899999998774 45544321 23457889999999875
No 126
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.63 E-value=9.3e-07 Score=101.52 Aligned_cols=173 Identities=15% Similarity=0.178 Sum_probs=118.4
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcC
Q 009212 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (540)
Q Consensus 292 tpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~ 371 (540)
+..+.+.+.++.+.+.++|++.||+|||.-.--.+++..... ....++|+--|.|--|..+++.+..--..
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~---------~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES---------GAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc---------CCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 556788888899999999999999999976544455544432 14556888889998888887766543211
Q ss_pred CCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCC
Q 009212 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPV 451 (540)
Q Consensus 372 ~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~ 451 (540)
..+-.|+.-....... .....+++||.|.|+..+.. .-.+..+.++|+||+|.=--+..|.-.+.+.+-..++
T Consensus 246 ~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred ccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 1222333322222111 12257999999999999877 5568899999999999754244455555554444456
Q ss_pred CCcEEEEeccCCHHHHHHHHHhCCCceEEeCC
Q 009212 452 TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 452 ~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~ 483 (540)
.-++|++|||+.. +.+..+|.++.++..+
T Consensus 319 ~LkvILMSAT~da---e~fs~YF~~~pvi~i~ 347 (924)
T KOG0920|consen 319 DLKVILMSATLDA---ELFSDYFGGCPVITIP 347 (924)
T ss_pred CceEEEeeeecch---HHHHHHhCCCceEeec
Confidence 8999999999984 4577888877666554
No 127
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.61 E-value=4.6e-07 Score=91.61 Aligned_cols=130 Identities=21% Similarity=0.322 Sum_probs=97.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|+ .|++.|..++-.+..|+ |+...||-|||++..+|++-..+. |..+-|++.+..||.+=++.+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~------------G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ------------GKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT------------SS-EEEEESSHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh------------cCCcEEEeccHHHhhccHHHH
Confidence 354 79999999997777766 999999999999998888765542 556999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhccc------cCCCccEEEEeCCcccC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL------QLINLRCAILDEVDILF 433 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~~~------~l~~i~~LVlDEad~ll 433 (540)
..+..+ .++.+.+++++....+....+. ++|+.+|...+. ++|+.+.. ....+.++||||||.++
T Consensus 139 ~~~y~~-LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEF-LGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHH-TT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHH-hhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 998885 7899999999887655444443 689999999886 45544211 24678899999999876
No 128
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.55 E-value=5e-08 Score=110.83 Aligned_cols=158 Identities=21% Similarity=0.296 Sum_probs=118.0
Q ss_pred CCCcHHHHHHHHHHH-cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 289 LRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 289 ~~ptpiQ~~aip~il-~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
....|+|.+.+-.+. ...++++-+|||+|||++|.+.+...+.. ..+.+++|++|.++|+....+.+.+
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~----------~p~~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY----------YPGSKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc----------CCCccEEEEcCCchhhcccccchhh
Confidence 356777877765443 34689999999999999999998877654 3467899999999999999988887
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHH--hccccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK--EGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~--~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
.... .++++..++|+..... ..+ ...+|+|+||+++..+.+ ...-.+.++..+|+||.|++. .++.+.++.+
T Consensus 996 r~~~-~g~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg--~~rgPVle~i 1069 (1230)
T KOG0952|consen 996 RDEL-PGIKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG--EDRGPVLEVI 1069 (1230)
T ss_pred hccc-CCceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeeccccccc--CCCcceEEEE
Confidence 6554 3788999999887662 223 247999999999988776 344567899999999999987 4555665555
Q ss_pred HHhC-------CCCCcEEEEeccC
Q 009212 446 ISSS-------PVTAQYLFVTATL 462 (540)
Q Consensus 446 l~~l-------~~~~Q~ll~SATl 462 (540)
.... +...|.+++|--+
T Consensus 1070 vsr~n~~s~~t~~~vr~~glsta~ 1093 (1230)
T KOG0952|consen 1070 VSRMNYISSQTEEPVRYLGLSTAL 1093 (1230)
T ss_pred eeccccCccccCcchhhhhHhhhh
Confidence 4433 3345666665544
No 129
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.54 E-value=8.1e-07 Score=103.86 Aligned_cols=158 Identities=22% Similarity=0.136 Sum_probs=95.4
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
.|.|+|.++...++.. ..+|+.-..|.|||.-..+.+...+.. ....++|||||. .|+.|...++.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~----------g~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT----------GRAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc----------CCCCcEEEEcCH-HHHHHHHHHHHH
Confidence 5999999988776543 368999999999998876655544432 223469999997 899999888865
Q ss_pred hhcCCCCceEEEEeCCcchHHHHH--hhcCCCcEEEeChHHHHHHHH-hccccCCCccEEEEeCCcccCCCCC-HHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLE--NLQEGVDVLIATPGRFMFLIK-EGILQLINLRCAILDEVDILFNDED-FEVALQ 443 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~--~l~~~~dIlVaTP~rL~~ll~-~~~~~l~~i~~LVlDEad~ll~d~~-f~~~i~ 443 (540)
.+. +...++.++........ ......+++|+|.+.+...-. ...+.-...++|||||||++-...+ -....+
T Consensus 221 kF~----l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~ 296 (956)
T PRK04914 221 RFN----LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ 296 (956)
T ss_pred HhC----CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH
Confidence 432 23333332221110000 111235899999887764111 1122223678999999999962111 111222
Q ss_pred HHHHhCCCCCcEEEEeccC
Q 009212 444 SLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 444 ~Il~~l~~~~Q~ll~SATl 462 (540)
.+..........+++|||.
T Consensus 297 ~v~~La~~~~~~LLLTATP 315 (956)
T PRK04914 297 VVEQLAEVIPGVLLLTATP 315 (956)
T ss_pred HHHHHhhccCCEEEEEcCc
Confidence 2222222345789999997
No 130
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.52 E-value=2.8e-06 Score=96.26 Aligned_cols=133 Identities=11% Similarity=0.076 Sum_probs=92.6
Q ss_pred CCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH--
Q 009212 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE-- 391 (540)
Q Consensus 314 TGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~-- 391 (540)
+|||||.+|+-.+-..+.. +..+|||+|...|+.|+...++..+. ...+..++++....+..+
T Consensus 169 ~GSGKTevyl~~i~~~l~~------------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA------------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc------------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHH
Confidence 5999999997666555532 55799999999999999999998753 235777887776554433
Q ss_pred -hhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC--CCCC---HHHHHHHHHHhCCCCCcEEEEeccCCH
Q 009212 392 -NLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF--NDED---FEVALQSLISSSPVTAQYLFVTATLPV 464 (540)
Q Consensus 392 -~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll--~d~~---f~~~i~~Il~~l~~~~Q~ll~SATlp~ 464 (540)
.+.. .+.|+|+|-..+ ...+.++.++||||=|--. ++.. ....+-.+... ..+..+|+-|||.+-
T Consensus 234 ~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTPSl 305 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHARTA 305 (665)
T ss_pred HHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCCCH
Confidence 3333 489999997654 5678899999999988432 1111 12223333333 347889999999987
Q ss_pred HHHHH
Q 009212 465 EIYNK 469 (540)
Q Consensus 465 ~i~~~ 469 (540)
+....
T Consensus 306 es~~~ 310 (665)
T PRK14873 306 EAQAL 310 (665)
T ss_pred HHHHH
Confidence 76543
No 131
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.48 E-value=9.6e-07 Score=102.11 Aligned_cols=172 Identities=23% Similarity=0.200 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHHc--------CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVE--------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 290 ~ptpiQ~~aip~il~--------G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
.-..+|-+|+..+.. |-=++--|.||+|||++=. =|+..+.. ...+.+..|..-.|.|-.|+
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd---------~~~g~RfsiALGLRTLTLQT 477 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRD---------DKQGARFAIALGLRSLTLQT 477 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCC---------CCCCceEEEEccccceeccc
Confidence 346689999988664 1224446899999998732 23333321 24567888999999999998
Q ss_pred HHHHHhhhcCCCCceEEEEeCCcchHHHHH-------------------------------------------hhcC---
Q 009212 362 LSNCRSLSKCGVPFRSMVVTGGFRQKTQLE-------------------------------------------NLQE--- 395 (540)
Q Consensus 362 ~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~-------------------------------------------~l~~--- 395 (540)
-+.+++-... .+=...+++|+....+..+ .+.+
T Consensus 478 Gda~r~rL~L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 478 GHALKTRLNL-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred hHHHHHhcCC-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 8888775432 1223455555532111110 0000
Q ss_pred -----CCcEEEeChHHHHHHHH--h-ccccCC--C--ccEEEEeCCcccCCCCCHHHHHHHHHHhCC-CCCcEEEEeccC
Q 009212 396 -----GVDVLIATPGRFMFLIK--E-GILQLI--N--LRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATL 462 (540)
Q Consensus 396 -----~~dIlVaTP~rL~~ll~--~-~~~~l~--~--i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SATl 462 (540)
...|+|||++.++.... + +...+. . =+.|||||+|.+- ......+.+++.... ....++++|||+
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD--~~~~~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE--PEDLPALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC--HHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 15799999999987752 1 222211 1 2469999999883 445556666666432 368899999999
Q ss_pred CHHHHHHHHHhC
Q 009212 463 PVEIYNKLVEVF 474 (540)
Q Consensus 463 p~~i~~~l~~~l 474 (540)
|+.+...+.+.+
T Consensus 635 P~~l~~~L~~Ay 646 (1110)
T TIGR02562 635 PPALVKTLFRAY 646 (1110)
T ss_pred CHHHHHHHHHHH
Confidence 999988877665
No 132
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.42 E-value=1.1e-06 Score=99.88 Aligned_cols=72 Identities=31% Similarity=0.433 Sum_probs=58.6
Q ss_pred CCCCCCcHHHHHHHHHH----HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~i----l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
....+|++.|.+++..+ ..++.+++.||||+|||++||+|++...... +.+++|.++|+.|-.|+
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-----------~~~viist~t~~lq~q~ 79 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-----------GKKVIISTRTKALQEQL 79 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-----------CCcEEEECCCHHHHHHH
Confidence 34558999999988553 3456699999999999999999999887654 35799999999999998
Q ss_pred HHHHHhh
Q 009212 362 LSNCRSL 368 (540)
Q Consensus 362 ~~~l~~l 368 (540)
.+....+
T Consensus 80 ~~~~~~~ 86 (654)
T COG1199 80 LEEDLPI 86 (654)
T ss_pred HHhhcch
Confidence 8776553
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.41 E-value=9.5e-07 Score=100.75 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=98.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|. .|+++|....-.+ .+.-|+.+.||.|||+++.+|+.-..+ .+..|.|++++..||.+-++.+
T Consensus 73 lG~-r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL------------~G~~VhVvT~NdyLA~RD~e~m 137 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL------------TGKGVHIVTVNDYLAKRDQEWM 137 (870)
T ss_pred hCC-CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh------------cCCceEEEeCCHHHHHHHHHHH
Confidence 355 5888887765333 356789999999999999999964433 2456999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhcc------ccCCCccEEEEeCCcccC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~~------~~l~~i~~LVlDEad~ll 433 (540)
..+..+ .++.++++.++....+....+ .|||+.+|..-|- ++|+.+. .....+.+.||||+|.++
T Consensus 138 ~pvy~~-LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 138 GQIYRF-LGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHH-cCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 998886 789999998887776654444 3799999997654 4444322 124568899999999876
No 134
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.40 E-value=3.4e-06 Score=97.73 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=87.9
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH-----hhhc--C-CCCceE
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-----SLSK--C-GVPFRS 377 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~-----~l~~--~-~~~l~v 377 (540)
.++.+.++||+|||++|+-.|+...... ...+.||+||+.+.-..+.+.+. .++. + +..++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~----------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~ 129 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY----------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIEL 129 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc----------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEE
Confidence 4799999999999999988887654432 34579999999998888776654 2222 1 233555
Q ss_pred EEEeCCc-------chHHHHHhhcC-------CCcEEEeChHHHHHHHH--hc--------c-cc---CCCcc-EEEEeC
Q 009212 378 MVVTGGF-------RQKTQLENLQE-------GVDVLIATPGRFMFLIK--EG--------I-LQ---LINLR-CAILDE 428 (540)
Q Consensus 378 ~~l~Gg~-------~~~~q~~~l~~-------~~dIlVaTP~rL~~ll~--~~--------~-~~---l~~i~-~LVlDE 428 (540)
..+.++. ....+++.+.. .++|+|.|-+.|..-.. .. . .. +...+ .||+||
T Consensus 130 ~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDE 209 (986)
T PRK15483 130 YVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDE 209 (986)
T ss_pred EEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEEC
Confidence 5555432 22333333321 47999999998864211 10 0 11 11222 689999
Q ss_pred CcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCH
Q 009212 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~ 464 (540)
.|++-.+...+ ..| ..+++.. ++.||||++.
T Consensus 210 Ph~~~~~~k~~---~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 210 PHRFPRDNKFY---QAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCCCCcchHHH---HHH-HhcCccc-EEEEeeecCC
Confidence 99996322233 444 3333223 4779999986
No 135
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.39 E-value=3.1e-07 Score=97.44 Aligned_cols=148 Identities=21% Similarity=0.216 Sum_probs=108.7
Q ss_pred CCCcHHHHHHHHHHHc-C--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVVE-G--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~-G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
..++|+|+.++.-+.. | |+-||+.|.|+|||++-.-+++. + ..+||+||.+--.+.|...++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i--------------kK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I--------------KKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e--------------cccEEEEecCccCHHHHHHHH
Confidence 3679999999998873 3 68999999999999987655542 2 335999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh--------ccccCCCccEEEEeCCcccCCCCC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQLINLRCAILDEVDILFNDED 437 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~--------~~~~l~~i~~LVlDEad~ll~d~~ 437 (540)
+.+... .+-.++..+.+.. +....++.|+|+|...+..--++ ..+.-....++|+||+|.+- ..-
T Consensus 366 k~wsti-~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP-A~M 438 (776)
T KOG1123|consen 366 KQWSTI-QDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP-AKM 438 (776)
T ss_pred Hhhccc-CccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch-HHH
Confidence 988763 2334555555443 22456789999998765422111 11223356789999999987 566
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 438 FEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 438 f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
|+..+..+-.++. ++++||+-
T Consensus 439 FRRVlsiv~aHcK-----LGLTATLv 459 (776)
T KOG1123|consen 439 FRRVLSIVQAHCK-----LGLTATLV 459 (776)
T ss_pred HHHHHHHHHHHhh-----ccceeEEe
Confidence 8888887777776 89999984
No 136
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=2.9e-06 Score=96.92 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=98.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
|. .|+++|...--++. .--|+.+.||.|||+++.+|++-..+. |..+-||+++..||.+=++.+.
T Consensus 83 G~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~------------GkgVhVVTvNdYLA~RDae~m~ 147 (939)
T PRK12902 83 GM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT------------GKGVHVVTVNDYLARRDAEWMG 147 (939)
T ss_pred CC-CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc------------CCCeEEEeCCHHHHHhHHHHHH
Confidence 44 68888877654443 456889999999999999998865543 4569999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhc------cccCCCccEEEEeCCcccC
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILF 433 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~------~~~l~~i~~LVlDEad~ll 433 (540)
.+..+ .++.++++.++....+....+ .|||+.+|+..|- ++|+.+ ......+.+.||||+|.++
T Consensus 148 ~vy~~-LGLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 148 QVHRF-LGLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHHHH-hCCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 88876 789999998877665544333 5899999998872 333322 2234668899999999876
No 137
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.30 E-value=3.8e-05 Score=84.77 Aligned_cols=207 Identities=18% Similarity=0.195 Sum_probs=119.3
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCC
Q 009212 295 QAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVP 374 (540)
Q Consensus 295 Q~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~ 374 (540)
-.+.+..+..++-+|+.++||||||.- +| +.|.+... ....++-+.-|.|--|.-+++....-.....+
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~-------~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGF-------ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhccc-------ccCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 345566677778899999999999963 22 33433211 11223777889987777766655543322222
Q ss_pred ceEEEEe--CCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC---
Q 009212 375 FRSMVVT--GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS--- 449 (540)
Q Consensus 375 l~v~~l~--Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l--- 449 (540)
-.|+..+ .+... ..-.|...|-|.|+.-+..+ -.|+..+++||||||.=. -..+.+..+++.+
T Consensus 125 ~~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERs---l~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 125 EEVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERS---LHTDILLGLLKKILKK 192 (674)
T ss_pred ceeeeEEEecccCC--------CceeEEEecchHHHHHHhcC-CccccccEEEEechhhhh---hHHHHHHHHHHHHHhc
Confidence 2333222 11111 12469999999998655443 347889999999999632 1333444444433
Q ss_pred CCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCC
Q 009212 450 PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPV 529 (540)
Q Consensus 450 ~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~ 529 (540)
...-.+|++|||+.-+ .+..+|.++.++..++... .++.+|..-+..+.. ..-+..+.+|-...+.
T Consensus 193 R~~LklIimSATlda~---kfS~yF~~a~i~~i~GR~f---PVei~y~~~p~~dYv--------~a~~~tv~~Ih~~E~~ 258 (674)
T KOG0922|consen 193 RPDLKLIIMSATLDAE---KFSEYFNNAPILTIPGRTF---PVEILYLKEPTADYV--------DAALITVIQIHLTEPP 258 (674)
T ss_pred CCCceEEEEeeeecHH---HHHHHhcCCceEeecCCCC---ceeEEeccCCchhhH--------HHHHHHHHHHHccCCC
Confidence 2346899999999854 5778888865555443222 234444432221100 1223344444444566
Q ss_pred CcEEEEecc
Q 009212 530 SKTIVFCNK 538 (540)
Q Consensus 530 ~rtIIFcnS 538 (540)
+-+|||-.-
T Consensus 259 GDILvFLtG 267 (674)
T KOG0922|consen 259 GDILVFLTG 267 (674)
T ss_pred CCEEEEeCC
Confidence 678998654
No 138
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=8.9e-06 Score=93.48 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=59.6
Q ss_pred CCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 287 gf~~ptpiQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
-|..++|.|.+.+.. +..|.++++.+|||+|||++.|.|++...... ...++++|.+.|..-..|+.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~---------~~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK---------PEVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc---------cccccEEEEcccchHHHHHH
Confidence 466679999887755 44788999999999999999999999876543 12367999999998888888
Q ss_pred HHHHhh
Q 009212 363 SNCRSL 368 (540)
Q Consensus 363 ~~l~~l 368 (540)
++++++
T Consensus 78 ~Elk~~ 83 (705)
T TIGR00604 78 EELRKL 83 (705)
T ss_pred HHHHhh
Confidence 888885
No 139
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.20 E-value=2.2e-05 Score=87.43 Aligned_cols=154 Identities=20% Similarity=0.286 Sum_probs=100.1
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 290 ~ptpiQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.++++|.+.+.= ..+|-|.|+.-..|-|||+- .+.++.++.... ...|| -||+||.-.|.+ ..+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~-------~~~GP-fLVi~P~StL~N-W~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK-------GIPGP-FLVIAPKSTLDN-WMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc-------CCCCC-eEEEeeHhhHHH-HHHHH
Confidence 677888776543 34788999999999999975 445555554321 12344 488899888743 34455
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHH-hh--cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLE-NL--QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~-~l--~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i 442 (540)
+++ .+.+++.+++|+........ .+ ....+|+|+|.+..+.- ...+.--.-+||||||||++- +-...+
T Consensus 237 ~rf---~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiK---N~~s~L 308 (971)
T KOG0385|consen 237 KRF---TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIK---NEKSKL 308 (971)
T ss_pred HHh---CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhc---chhhHH
Confidence 555 47899999999875433321 11 23579999999987532 112222356899999999997 334455
Q ss_pred HHHHHhCCCCCcEEEEeccC
Q 009212 443 QSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 443 ~~Il~~l~~~~Q~ll~SATl 462 (540)
..+++.+.... .+++|.|.
T Consensus 309 ~~~lr~f~~~n-rLLlTGTP 327 (971)
T KOG0385|consen 309 SKILREFKTDN-RLLLTGTP 327 (971)
T ss_pred HHHHHHhcccc-eeEeeCCc
Confidence 56667665433 46677775
No 140
>COG4889 Predicted helicase [General function prediction only]
Probab=98.19 E-value=9e-06 Score=91.31 Aligned_cols=148 Identities=20% Similarity=0.259 Sum_probs=98.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCC
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G-----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~ 343 (540)
.|+.+.. .++..+|.-..=.+|+|+|+.||.....| |--+ ++..|+|||+..| -+...+.
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkL-IMAcGTGKTfTsL-kisEala------------ 205 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKL-IMACGTGKTFTSL-KISEALA------------ 205 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcE-EEecCCCccchHH-HHHHHHh------------
Confidence 4444443 33334443344568999999999998865 2222 3456999998854 3333332
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH--------------------HHH-----hhcCCCc
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT--------------------QLE-----NLQEGVD 398 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~--------------------q~~-----~l~~~~d 398 (540)
..++|+|+|+..|..|..+.+..-.. .+++...++++..... -+. ....+--
T Consensus 206 -~~~iL~LvPSIsLLsQTlrew~~~~~--l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~ 282 (1518)
T COG4889 206 -AARILFLVPSISLLSQTLREWTAQKE--LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLT 282 (1518)
T ss_pred -hhheEeecchHHHHHHHHHHHhhccC--ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcE
Confidence 24799999999999999888876543 4677766666532111 011 1123456
Q ss_pred EEEeChHHHHHHHHhccccCCCccEEEEeCCcccCC
Q 009212 399 VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (540)
Q Consensus 399 IlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~ 434 (540)
|+++|...+...-.....-+..++++|+||||+-.+
T Consensus 283 vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 283 VVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred EEEEcccchHHHHHHHHcCCCCccEEEecchhcccc
Confidence 999999998877665555678899999999999653
No 141
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.17 E-value=1.5e-05 Score=85.99 Aligned_cols=240 Identities=9% Similarity=-0.002 Sum_probs=144.4
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 283 LKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 283 L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
+..+..+....+|..++..+..|+++++...|.+||.++|.+..+..+... .....+++.|+.++++...
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~----------~~s~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC----------HATNSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC----------cccceecchhHHHHhhccC
Confidence 344566778899999999999999999999999999999999998877543 2334789999999987654
Q ss_pred HHHHhhhcCCCCc--eEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc----ccCCCccEEEEeCCcccCCCC
Q 009212 363 SNCRSLSKCGVPF--RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI----LQLINLRCAILDEVDILFNDE 436 (540)
Q Consensus 363 ~~l~~l~~~~~~l--~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~----~~l~~i~~LVlDEad~ll~d~ 436 (540)
+.+.-....-... -++-.+.+....+.....+.+.++|.+.|..+...+--+. ..+-...++++||+|.++.-.
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 4332221100111 1233444444444444556788999999998875443222 234456789999999987311
Q ss_pred --CHHHHHHHHHHhC-----CCCCcEEEEeccCCHHHHHHHHHhCC--CceEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 009212 437 --DFEVALQSLISSS-----PVTAQYLFVTATLPVEIYNKLVEVFP--DCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (540)
Q Consensus 437 --~f~~~i~~Il~~l-----~~~~Q~ll~SATlp~~i~~~l~~~l~--~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~ 507 (540)
....++++++..+ ....|++-.+||+-..++ +....+. ....+..++ .+..-+++++.-+... .+.
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~-~~~~~~~~~E~~Li~~DG---SPs~~K~~V~WNP~~~-P~~ 503 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTR-LRSELANLSELELVTIDG---SPSSEKLFVLWNPSAP-PTS 503 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHH-HHHHhcCCcceEEEEecC---CCCccceEEEeCCCCC-Ccc
Confidence 1334444554433 357899999999976653 2333332 223333222 2333345555433311 111
Q ss_pred chhhHhhhHHHHHHHHHHh--CCCCcEEEEeccc
Q 009212 508 TPETAFLNKKSALLQLIEK--SPVSKTIVFCNKK 539 (540)
Q Consensus 508 ~~~~~~~~K~~~L~~ll~~--~~~~rtIIFcnSr 539 (540)
. .....|+...-+++.+ ..+=++|-||.+|
T Consensus 504 ~--~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R 535 (1034)
T KOG4150|consen 504 K--SEKSSKVVEVSHLFAEMVQHGLRCIAFCPSR 535 (1034)
T ss_pred h--hhhhhHHHHHHHHHHHHHHcCCcEEEeccHH
Confidence 1 1112344333333333 1234899999987
No 142
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.2e-05 Score=87.70 Aligned_cols=149 Identities=21% Similarity=0.212 Sum_probs=91.0
Q ss_pred HHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH-hhhcCCCCc
Q 009212 297 MAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-SLSKCGVPF 375 (540)
Q Consensus 297 ~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~-~l~~~~~~l 375 (540)
+...+|..+--+|||+.||||||.- +| |+|.+.... .........+=|.-|.|--|..+++..- +|+.++..+
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~--s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eV 336 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFA--SEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEV 336 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccC--CccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccce
Confidence 4445566666688999999999963 33 344443211 1112223356677788877776665443 354433444
Q ss_pred eEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHH-------Hh
Q 009212 376 RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI-------SS 448 (540)
Q Consensus 376 ~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il-------~~ 448 (540)
...+-+.++.. ....|.+.|-|.|+.=+.+ .+.|.....+||||||.=. -+.+.+.-++ ..
T Consensus 337 sYqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERS---vnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 337 SYQIRFDGTIG--------EDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERS---VNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred eEEEEeccccC--------CCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhcc---chHHHHHHHHHHHHHHHHH
Confidence 44555544432 2357999999999887776 4557888999999999632 1223333222 22
Q ss_pred CCC------CCcEEEEeccCC
Q 009212 449 SPV------TAQYLFVTATLP 463 (540)
Q Consensus 449 l~~------~~Q~ll~SATlp 463 (540)
+.. .-..|++|||+-
T Consensus 405 ~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEE
Confidence 222 456899999984
No 143
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.07 E-value=0.00016 Score=77.18 Aligned_cols=229 Identities=17% Similarity=0.152 Sum_probs=126.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHH-HHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAF-PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~ai-p~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
.+.|...+.++.-.+.|++-. .-|---|++-+ ..+..++-+++++.||||||.-.=-+++...... .
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~-~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-----------~ 91 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR-ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-----------L 91 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh-cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-----------c
Confidence 456888888888888776642 23434455555 4456677888999999999975433344433322 1
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh--------cccc
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--------GILQ 417 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~--------~~~~ 417 (540)
..+...-|.|--|.+++.....-.. +..+--+|-.-.-+ . -+||..++.++.. ..-.
T Consensus 92 ~~v~CTQprrvaamsva~RVadEMD----v~lG~EVGysIrfE-------d----C~~~~T~Lky~tDgmLlrEams~p~ 156 (699)
T KOG0925|consen 92 TGVACTQPRRVAAMSVAQRVADEMD----VTLGEEVGYSIRFE-------D----CTSPNTLLKYCTDGMLLREAMSDPL 156 (699)
T ss_pred cceeecCchHHHHHHHHHHHHHHhc----cccchhcccccccc-------c----cCChhHHHHHhcchHHHHHHhhCcc
Confidence 2366677888888887766654322 22222221111000 0 1244444432211 1224
Q ss_pred CCCccEEEEeCCcccC-CCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEE
Q 009212 418 LINLRCAILDEVDILF-NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFL 496 (540)
Q Consensus 418 l~~i~~LVlDEad~ll-~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~ 496 (540)
+....++|+||||.-. ...-..-.++.++..- +.-.+|++|||+-. ..+..++.++-++..++.+ .++-+|
T Consensus 157 l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~~----PvEi~Y 228 (699)
T KOG0925|consen 157 LGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGTH----PVEIFY 228 (699)
T ss_pred cccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCCCC----ceEEEe
Confidence 7788999999999631 0111222334444443 37889999999864 3577888887776655422 233333
Q ss_pred EEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecc
Q 009212 497 VDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNK 538 (540)
Q Consensus 497 v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnS 538 (540)
..-...+ -+..-+..+++|-.....+-+|||...
T Consensus 229 t~e~erD--------ylEaairtV~qih~~ee~GDilvFLtg 262 (699)
T KOG0925|consen 229 TPEPERD--------YLEAAIRTVLQIHMCEEPGDILVFLTG 262 (699)
T ss_pred cCCCChh--------HHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 3222211 112233344455444456679999653
No 144
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.07 E-value=3.8e-05 Score=74.53 Aligned_cols=74 Identities=18% Similarity=0.355 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~d-vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
++++-|.+|+..++.... .+|.+|.|+|||.+. ..++..+..... ......+.++|+++|+..-+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367889999999999888 999999999999543 334444421000 00124577899999999999999999888
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.93 E-value=6.3e-05 Score=85.99 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=98.4
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
|. .|+++|...--.+..|+ |....||-|||++..+|+.-..+. |..|-|++.+-.||..=...+.
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~------------GkgVhVVTvNdYLA~RDae~mg 140 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT------------GKGVIVSTVNEYLAERDAEEMG 140 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc------------CCceEEEecchhhhhhhHHHHH
Confidence 54 78999988776666653 789999999999999998654432 4458889999999999888888
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhccc------cCCCccEEEEeCCcccC
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL------QLINLRCAILDEVDILF 433 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~~~------~l~~i~~LVlDEad~ll 433 (540)
.+..+ .++.++++..+....+....+ .|||+.+|...|- ++|+.+.. ....+.|.||||+|.++
T Consensus 141 ~vy~f-LGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 141 KVFNF-LGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHH-hCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 88776 788999988877666544444 4899999998764 45554321 24567899999999876
No 146
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.91 E-value=5.4e-05 Score=73.36 Aligned_cols=124 Identities=23% Similarity=0.293 Sum_probs=71.4
Q ss_pred CCcHHHHHHHHHHHcCC--cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 290 RPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~--dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
++++-|.+++..++... -+++.++.|+|||.+ +-.+...+.. .+.++++++||...+..+.+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-----------~g~~v~~~apT~~Aa~~L~~~~~- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-----------AGKRVIGLAPTNKAAKELREKTG- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-----------TT--EEEEESSHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-----------CCCeEEEECCcHHHHHHHHHhhC-
Confidence 36788999999987544 467789999999975 3334444433 24679999999998888666531
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc----cccCCCccEEEEeCCcccCCCCCHHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG----ILQLINLRCAILDEVDILFNDEDFEVALQ 443 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~----~~~l~~i~~LVlDEad~ll~d~~f~~~i~ 443 (540)
+.+. |-.+++...... ...+...++||||||-++- ...+.
T Consensus 68 -------~~a~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~-----~~~~~ 111 (196)
T PF13604_consen 68 -------IEAQ------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD-----SRQLA 111 (196)
T ss_dssp -------S-EE------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B-----HHHHH
T ss_pred -------cchh------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccC-----HHHHH
Confidence 1111 111111000000 0014566799999997664 34667
Q ss_pred HHHHhCCC-CCcEEEEeccC
Q 009212 444 SLISSSPV-TAQYLFVTATL 462 (540)
Q Consensus 444 ~Il~~l~~-~~Q~ll~SATl 462 (540)
.++...+. ..++|++.=.-
T Consensus 112 ~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 112 RLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp HHHHHS-T-T-EEEEEE-TT
T ss_pred HHHHHHHhcCCEEEEECCcc
Confidence 77777665 66777776543
No 147
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.89 E-value=8.1e-05 Score=84.51 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=95.2
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~ 386 (540)
=.+|.||.|||||-+..-++-+.+. ....++|+|...+.|+.++...++...- .++..-.-.++..+
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~-----------~~~~~VLvVShRrSL~~sL~~rf~~~~l--~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK-----------NPDKSVLVVSHRRSLTKSLAERFKKAGL--SGFVNYLDSDDYII 117 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc-----------CCCCeEEEEEhHHHHHHHHHHHHhhcCC--Ccceeeeccccccc
Confidence 3577899999999875444433322 2355799999999999999998876532 12221111111111
Q ss_pred HHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHH-------HHHhCCCCCcEEEEe
Q 009212 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS-------LISSSPVTAQYLFVT 459 (540)
Q Consensus 387 ~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~-------Il~~l~~~~Q~ll~S 459 (540)
.. ...+-+++..+.|..+. ...+.+.++|||||+...+ .+-|.+.|++ +...+.....+|++-
T Consensus 118 ~~------~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL-~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~D 187 (824)
T PF02399_consen 118 DG------RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVL-NQLFSPTMRQREEVDNLLKELIRNAKTVIVMD 187 (824)
T ss_pred cc------cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHH-HHHhHHHHhhHHHHHHHHHHHHHhCCeEEEec
Confidence 10 12456677677665443 2346678999999999888 3334444333 233345567899999
Q ss_pred ccCCHHHHHHHHHhCCC
Q 009212 460 ATLPVEIYNKLVEVFPD 476 (540)
Q Consensus 460 ATlp~~i~~~l~~~l~~ 476 (540)
|++.....+++...-++
T Consensus 188 A~ln~~tvdFl~~~Rp~ 204 (824)
T PF02399_consen 188 ADLNDQTVDFLASCRPD 204 (824)
T ss_pred CCCCHHHHHHHHHhCCC
Confidence 99999999999887655
No 148
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.84 E-value=0.0007 Score=74.90 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=98.6
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcC
Q 009212 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (540)
Q Consensus 292 tpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~ 371 (540)
..++.+.+..+-.++-++|++.||||||.- +-++|..... .....+-+.-|.|.-|..++..+..-...
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY-------~~~GmIGcTQPRRvAAiSVAkrVa~EM~~ 426 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGY-------ADNGMIGCTQPRRVAAISVAKRVAEEMGV 426 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhccc-------ccCCeeeecCchHHHHHHHHHHHHHHhCC
Confidence 445556666666777888999999999964 2344444321 11224555669998888888776654321
Q ss_pred CCCceEEEEe--CCcchHHHHHhhcCCCcEEEeChHHHHH-HHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 372 GVPFRSMVVT--GGFRQKTQLENLQEGVDVLIATPGRFMF-LIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 372 ~~~l~v~~l~--Gg~~~~~q~~~l~~~~dIlVaTP~rL~~-ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
..+-.++..+ -+... ...-|=..|-|.|+. .|.. -.|....++|+||||.=. -..+.+.-|++.
T Consensus 427 ~lG~~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~d--~~L~kYSviImDEAHERs---lNtDilfGllk~ 493 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLKD--RDLDKYSVIIMDEAHERS---LNTDILFGLLKK 493 (1042)
T ss_pred ccccccceEEEeeecCC--------CceeEEEeccchHHHHHhhh--hhhhheeEEEechhhhcc---cchHHHHHHHHH
Confidence 1222222211 11110 123577889988874 3332 246778899999999643 122333333332
Q ss_pred C---CCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCC
Q 009212 449 S---PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484 (540)
Q Consensus 449 l---~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~ 484 (540)
. ...-.+|+.|||+.-+ .+.++|.++-.+..++
T Consensus 494 ~larRrdlKliVtSATm~a~---kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 494 VLARRRDLKLIVTSATMDAQ---KFSNFFGNCPQFTIPG 529 (1042)
T ss_pred HHHhhccceEEEeeccccHH---HHHHHhCCCceeeecC
Confidence 2 2366899999999753 5778888766555443
No 149
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.83 E-value=0.00014 Score=86.12 Aligned_cols=137 Identities=22% Similarity=0.255 Sum_probs=90.8
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~ 385 (540)
+.-+|.--+|||||+..+..+ +.+... ...|.+++|+-.++|-.|+.+.+..+.... .... ...+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~--~~~~---~~~s 338 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVA--FNDP---KAES 338 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhh--hhcc---cccC
Confidence 458999999999999844333 333322 457899999999999999999999987531 1111 2333
Q ss_pred hHHHHHhhcCC-CcEEEeChHHHHHHHHhc-cccCCCcc-EEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 386 QKTQLENLQEG-VDVLIATPGRFMFLIKEG-ILQLINLR-CAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 386 ~~~q~~~l~~~-~dIlVaTP~rL~~ll~~~-~~~l~~i~-~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
..+..+.+..+ -.|||+|-.+|-..+... ...+.+-. .+|+||||+-- +...-..+...++ +..+++||.|.
T Consensus 339 ~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ----~G~~~~~~~~~~~-~a~~~gFTGTP 413 (962)
T COG0610 339 TSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ----YGELAKLLKKALK-KAIFIGFTGTP 413 (962)
T ss_pred HHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc----ccHHHHHHHHHhc-cceEEEeeCCc
Confidence 44444445433 389999999998887654 11122222 57889999864 3333333334444 48999999996
No 150
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.76 E-value=0.00017 Score=80.86 Aligned_cols=168 Identities=21% Similarity=0.260 Sum_probs=106.8
Q ss_pred CcHHHHHHHHHH--H--cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 291 PSQIQAMAFPPV--V--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 291 ptpiQ~~aip~i--l--~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
+-++|.-.+.-+ + .+-+-|+.-..|-|||.- .++.+..|.+.. ..+| -|||||.-.| .++++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g--------~~gp-HLVVvPsSTl----eNWlr 465 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG--------NPGP-HLVVVPSSTL----ENWLR 465 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC--------CCCC-cEEEecchhH----HHHHH
Confidence 567887766542 2 455778888999999954 455555555432 2344 4888998775 66777
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHH-HhccccCCCccEEEEeCCcccCCCCCHHHH
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLI-KEGILQLINLRCAILDEVDILFNDEDFEVA 441 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll-~~~~~~l~~i~~LVlDEad~ll~d~~f~~~ 441 (540)
++.++++.+++...+|....+.+++... .+.+|||+|......-- .+..+.-.++.|+|+||+|.|- ++ ....
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLK-N~-~SeR 543 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLK-NR-TSER 543 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhh-cc-chHH
Confidence 7777778899999999886665544432 25899999987553111 1112223467899999999886 33 3334
Q ss_pred HHHHHHhCCCCCcEEEEeccC-C---HHHHHHHHHhCCC
Q 009212 442 LQSLISSSPVTAQYLFVTATL-P---VEIYNKLVEVFPD 476 (540)
Q Consensus 442 i~~Il~~l~~~~Q~ll~SATl-p---~~i~~~l~~~l~~ 476 (540)
..+++..- ..+.|++|.|. - .++..++.-.+++
T Consensus 544 y~~LM~I~--An~RlLLTGTPLQNNL~ELiSLL~FvlP~ 580 (941)
T KOG0389|consen 544 YKHLMSIN--ANFRLLLTGTPLQNNLKELISLLAFVLPK 580 (941)
T ss_pred HHHhcccc--ccceEEeeCCcccccHHHHHHHHHHHhhH
Confidence 45555442 45668888885 2 3444444444443
No 151
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.71 E-value=0.00049 Score=70.44 Aligned_cols=175 Identities=19% Similarity=0.174 Sum_probs=109.7
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----------cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccC
Q 009212 270 FKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLS 339 (540)
Q Consensus 270 F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il----------~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~ 339 (540)
.-.+.|++.++.. ..++..|.+++-.+. ...-+++--.||.||--...--|++.++.
T Consensus 23 ~y~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~------- 89 (303)
T PF13872_consen 23 TYRLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR------- 89 (303)
T ss_pred CcccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-------
Confidence 3455677766532 257888988875543 23457777799998887655556665543
Q ss_pred CCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc---cc
Q 009212 340 KSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG---IL 416 (540)
Q Consensus 340 ~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~---~~ 416 (540)
.+.++|.+..+..|-....+.++.++.. .+.+..+.. ..... ...+. -.||++|...|..--..+ ..
T Consensus 90 ----Gr~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~-~~~~~-~~~~~--~GvlF~TYs~L~~~~~~~~~~~s 159 (303)
T PF13872_consen 90 ----GRKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNK-FKYGD-IIRLK--EGVLFSTYSTLISESQSGGKYRS 159 (303)
T ss_pred ----CCCceEEEECChhhhhHHHHHHHHhCCC--cccceechh-hccCc-CCCCC--CCccchhHHHHHhHHhccCCccc
Confidence 2457999999999999999999998753 333333321 11110 01122 369999998877554321 11
Q ss_pred cCC--------C-ccEEEEeCCcccCCCCC-------HHHHHHHHHHhCCCCCcEEEEeccCCHHHHH
Q 009212 417 QLI--------N-LRCAILDEVDILFNDED-------FEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (540)
Q Consensus 417 ~l~--------~-i~~LVlDEad~ll~d~~-------f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~ 468 (540)
.|. + =.+|||||||.+-+... ....+..|...+| ..+++.+|||-..+..+
T Consensus 160 Rl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 160 RLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRN 226 (303)
T ss_pred hHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCce
Confidence 111 1 12799999999874211 3345666777776 56699999998666543
No 152
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.69 E-value=0.001 Score=77.22 Aligned_cols=153 Identities=18% Similarity=0.216 Sum_probs=94.4
Q ss_pred CcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 291 PSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 291 ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
++.+|...+.-+. +.-|-|+.-..|-|||.- .+.++.++.-++-.| || -||||||--+.+ +.-+++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnW-------GP-HLIVVpTsviLn-WEMElK 685 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNW-------GP-HLIVVPTSVILN-WEMELK 685 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCC-------CC-ceEEeechhhhh-hhHHHh
Confidence 3456776654432 345788889999999965 456666665443222 33 588899976432 333455
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHh-h--cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHH
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLEN-L--QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~-l--~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~ 443 (540)
++ +.++++..++|........+. + .+..||.|++...+..-+. .+.-.+.+||||||||.+- ++ -....+
T Consensus 686 Rw---cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIK-nf-ksqrWQ 758 (1958)
T KOG0391|consen 686 RW---CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIK-NF-KSQRWQ 758 (1958)
T ss_pred hh---CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhc-ch-hHHHHH
Confidence 55 478999999987654332221 1 1336899999887765443 2233467899999999986 21 223344
Q ss_pred HHHHhCCCCCcEEEEeccC
Q 009212 444 SLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 444 ~Il~~l~~~~Q~ll~SATl 462 (540)
.++.. + ..|.++++.|.
T Consensus 759 Allnf-n-sqrRLLLtgTP 775 (1958)
T KOG0391|consen 759 ALLNF-N-SQRRLLLTGTP 775 (1958)
T ss_pred HHhcc-c-hhheeeecCCc
Confidence 44433 2 44567777774
No 153
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.68 E-value=0.0002 Score=69.87 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH------
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL------ 362 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~------ 362 (540)
...|.-|..++.+++...-+++.+|.|+|||+..+..+++.+... ..-+.+|+-|..+....+-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g----------~~~kiii~Rp~v~~~~~lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG----------EYDKIIITRPPVEAGEDLGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT----------S-SEEEEEE-S--TT----SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC----------CCcEEEEEecCCCCccccccCCCCH
Confidence 345788999999999878889999999999999998888887653 2446888888775421110
Q ss_pred -HHHHhhhcCCCCce-E-EEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHH
Q 009212 363 -SNCRSLSKCGVPFR-S-MVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439 (540)
Q Consensus 363 -~~l~~l~~~~~~l~-v-~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~ 439 (540)
+.+.-+.. ++. . ..+.+..... .+.....|-+..+..+ + .-.+.+ .++|||||..+. .
T Consensus 73 ~eK~~p~~~---p~~d~l~~~~~~~~~~----~~~~~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~t-----~ 133 (205)
T PF02562_consen 73 EEKMEPYLR---PIYDALEELFGKEKLE----ELIQNGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNLT-----P 133 (205)
T ss_dssp -----TTTH---HHHHHHTTTS-TTCHH----HHHHTTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG-------H
T ss_pred HHHHHHHHH---HHHHHHHHHhChHhHH----HHhhcCeEEEEehhhh----c--Cccccc-eEEEEecccCCC-----H
Confidence 00000000 000 0 0000111111 1111233444443322 1 112222 689999998764 4
Q ss_pred HHHHHHHHhCCCCCcEEEEecc
Q 009212 440 VALQSLISSSPVTAQYLFVTAT 461 (540)
Q Consensus 440 ~~i~~Il~~l~~~~Q~ll~SAT 461 (540)
..+..++.++...++++++.-.
T Consensus 134 ~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 134 EELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHHcccCCCcEEEEecCc
Confidence 6788889999888888887654
No 154
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=97.66 E-value=0.001 Score=75.77 Aligned_cols=160 Identities=21% Similarity=0.147 Sum_probs=101.1
Q ss_pred CCcHHHHHHHHHHH---cCC-------cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHH
Q 009212 290 RPSQIQAMAFPPVV---EGK-------SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (540)
Q Consensus 290 ~ptpiQ~~aip~il---~G~-------dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~ 359 (540)
.++|+|++.+.-+. .|. -+|+.-..|+|||+- +++.+..+++.-. .....--++|||+|. .|+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P----~~~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFP----QAKPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCc----CccccccccEEEccH-HHHH
Confidence 57899999987654 222 366666789999987 4555555554310 111122579999996 6777
Q ss_pred HHHHHHHhhhcCCCCceEEEEeCCcch-H-HHHHhh-----cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc
Q 009212 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQ-K-TQLENL-----QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 360 Qi~~~l~~l~~~~~~l~v~~l~Gg~~~-~-~q~~~l-----~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l 432 (540)
-..+++.+.... ..+....++|.... . .+...+ .-..-|+|-+.+.+.+.++ .+....+.+||+||.|++
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCc
Confidence 778888776542 35677777777663 0 000000 0123578888888876655 445668899999999998
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 433 FNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 433 l~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
-+ -...+...+..+. .++.|++|.|+
T Consensus 389 kN---~~s~~~kaL~~l~-t~rRVLLSGTp 414 (776)
T KOG0390|consen 389 KN---SDSLTLKALSSLK-TPRRVLLTGTP 414 (776)
T ss_pred cc---hhhHHHHHHHhcC-CCceEEeeCCc
Confidence 62 2233333344443 55678889996
No 155
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.64 E-value=0.00097 Score=73.67 Aligned_cols=171 Identities=19% Similarity=0.171 Sum_probs=101.5
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhc
Q 009212 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (540)
Q Consensus 291 ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~ 370 (540)
.+++-.+.+.++...+-+||.+.||||||.- +| |.|.+.. -...+.++-+.-|.|--|..++..+.+-..
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaG------ytk~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAG------YTKGGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhcc------cccCCceEeecCcchHHHHHHHHHHHHHhC
Confidence 3555667777788888899999999999963 34 3344332 223455577788999988888766654322
Q ss_pred CCCCceEEEE--eCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC-CCCCHHHHHHHHHH
Q 009212 371 CGVPFRSMVV--TGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF-NDEDFEVALQSLIS 447 (540)
Q Consensus 371 ~~~~l~v~~l--~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll-~d~~f~~~i~~Il~ 447 (540)
...+-.|+.- +-+... ..--|=+.|-|.|+.=+.. -..|.+..++||||||.=- .-.-.--.+..|.+
T Consensus 336 vkLG~eVGYsIRFEdcTS--------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar 406 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTS--------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR 406 (902)
T ss_pred cccccccceEEEeccccC--------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHh
Confidence 1111111111 100000 1123558899988754433 3457889999999999621 00011223333333
Q ss_pred hCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCC
Q 009212 448 SSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG 484 (540)
Q Consensus 448 ~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~ 484 (540)
..+.-..++.|||+.-+ .+..+|.+..++..++
T Consensus 407 -~RpdLKllIsSAT~DAe---kFS~fFDdapIF~iPG 439 (902)
T KOG0923|consen 407 -FRPDLKLLISSATMDAE---KFSAFFDDAPIFRIPG 439 (902)
T ss_pred -hCCcceEEeeccccCHH---HHHHhccCCcEEeccC
Confidence 34577899999999754 4567777765555443
No 156
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=97.63 E-value=0.00091 Score=75.20 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=97.6
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHH----HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 009212 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (540)
Q Consensus 273 l~L~~~ll~~L~~~gf~~ptpiQ~~aip~i----l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~a 348 (540)
+.+|..|. ..+.++|+..+.-+ ..+.--|+--..|-|||.-.+ ..|..|.... .-...+
T Consensus 196 ~~vPg~I~--------~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~--------k~~~pa 258 (923)
T KOG0387|consen 196 FKVPGFIW--------SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSG--------KLTKPA 258 (923)
T ss_pred ccccHHHH--------HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcc--------cccCce
Confidence 55677764 34567898876543 345667777899999996422 2222222210 112459
Q ss_pred EEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch------------HHHHHhh-cCCCcEEEeChHHHHHHHHhcc
Q 009212 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ------------KTQLENL-QEGVDVLIATPGRFMFLIKEGI 415 (540)
Q Consensus 349 LIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~------------~~q~~~l-~~~~dIlVaTP~rL~~ll~~~~ 415 (540)
|||||. .+..|..+++.... +.+++.+++|.... ...+.+. ..+.+|+|+|.+.+.-. ...
T Consensus 259 LIVCP~-Tii~qW~~E~~~w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~ 332 (923)
T KOG0387|consen 259 LIVCPA-TIIHQWMKEFQTWW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDD 332 (923)
T ss_pred EEEccH-HHHHHHHHHHHHhC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--Ccc
Confidence 999997 56677777777664 67899988876542 1111111 13457999998876321 122
Q ss_pred ccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 416 LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 416 ~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
+.-..-+|+|+||.|++-+ .. ..+...+..++ ..+.+++|.|.
T Consensus 333 l~~~~W~y~ILDEGH~IrN-pn--s~islackki~-T~~RiILSGTP 375 (923)
T KOG0387|consen 333 LLGILWDYVILDEGHRIRN-PN--SKISLACKKIR-TVHRIILSGTP 375 (923)
T ss_pred cccccccEEEecCcccccC-Cc--cHHHHHHHhcc-ccceEEeeCcc
Confidence 2333467999999999972 22 23333344444 55667778875
No 157
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.48 E-value=0.00042 Score=73.16 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~ 386 (540)
-++|.+..|||||+..+ .++..+. ....+..+++++++..|...+...+..-...
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~---------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQ---------NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhh---------ccccCCceEEEEecchHHHHHHHHHhhhccc---------------
Confidence 36788999999998743 3333331 1134667999999999988887777654200
Q ss_pred HHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCC------CCHHHHHHHHHHh
Q 009212 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVALQSLISS 448 (540)
Q Consensus 387 ~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d------~~f~~~i~~Il~~ 448 (540)
......+..+..+...+..........++|||||||+|... ......+..+++.
T Consensus 58 --------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 --------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 00122333444443333322344567899999999999841 1234677777776
No 158
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.47 E-value=0.00025 Score=71.17 Aligned_cols=88 Identities=26% Similarity=0.422 Sum_probs=70.3
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc-chHHHHHhhcC-CCcEEEeChHHHHHHHHhccccCC
Q 009212 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF-RQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 342 ~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~-~~~~q~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
....|.+|||+..---|-.+.+.++.+.. ....+..++... ...+|...+.. .++|.||||+||..++..+.+.++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 45679999999988888888888777632 234555556554 67888888874 689999999999999999999999
Q ss_pred CccEEEEeCCcc
Q 009212 420 NLRCAILDEVDI 431 (540)
Q Consensus 420 ~i~~LVlDEad~ 431 (540)
++++||||--|.
T Consensus 201 ~l~~ivlD~s~~ 212 (252)
T PF14617_consen 201 NLKRIVLDWSYL 212 (252)
T ss_pred cCeEEEEcCCcc
Confidence 999999997543
No 159
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.34 E-value=0.0012 Score=70.86 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=93.8
Q ss_pred CCCcHHHHHHHHHHH-cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 289 LRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 289 ~~ptpiQ~~aip~il-~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
..+-|+|.+.+...+ .|.-+++.-..|-|||+-++.-+ .... .+. -.||+||.. +-....+.|..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyr-aEw-----------plliVcPAs-vrftWa~al~r 262 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYR-AEW-----------PLLIVCPAS-VRFTWAKALNR 262 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHh-hcC-----------cEEEEecHH-HhHHHHHHHHH
Confidence 345688999988755 67788899999999998654322 2222 211 278999964 33445666666
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
+.... ..+.++.++....... ..-..|.|.+.+.+..+-. .+.-...+++|+||.|++- + +-...++.++.
T Consensus 263 ~lps~--~pi~vv~~~~D~~~~~---~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk-~-sktkr~Ka~~d 333 (689)
T KOG1000|consen 263 FLPSI--HPIFVVDKSSDPLPDV---CTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLK-D-SKTKRTKAATD 333 (689)
T ss_pred hcccc--cceEEEecccCCcccc---ccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhh-c-cchhhhhhhhh
Confidence 65422 2356666665443221 1224688888887654322 2333347889999999986 3 33333555555
Q ss_pred hCCCCCcEEEEeccC
Q 009212 448 SSPVTAQYLFVTATL 462 (540)
Q Consensus 448 ~l~~~~Q~ll~SATl 462 (540)
.+..-..+|++|.|.
T Consensus 334 llk~akhvILLSGTP 348 (689)
T KOG1000|consen 334 LLKVAKHVILLSGTP 348 (689)
T ss_pred HHHHhhheEEecCCc
Confidence 555566789999986
No 160
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.31 E-value=0.0033 Score=72.59 Aligned_cols=131 Identities=24% Similarity=0.226 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++-|++|+..+..++-+++.++.|+|||.+. -.++..+... .....+++++||-.-|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~---------~~~~~v~l~ApTg~AA~~L~e~~--- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL---------GGLLPVGLAAPTGRAAKRLGEVT--- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc---------CCCceEEEEeCchHHHHHHHHhc---
Confidence 3789999999999998889999999999999642 2333333221 01146888999988776543321
Q ss_pred hcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 369 ~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
. .... ... +.+.. .++..... ..-.....++||||||+++- ...+..+++.
T Consensus 389 -g----~~a~------Tih---~lL~~-------~~~~~~~~---~~~~~~~~~llIvDEaSMvd-----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -G----LTAS------TIH---RLLGY-------GPDTFRHN---HLEDPIDCDLLIVDESSMMD-----TWLALSLLAA 439 (720)
T ss_pred -C----Cccc------cHH---HHhhc-------cCCccchh---hhhccccCCEEEEeccccCC-----HHHHHHHHHh
Confidence 1 0000 000 00100 01100000 00112357899999998663 2456777778
Q ss_pred CCCCCcEEEEecc
Q 009212 449 SPVTAQYLFVTAT 461 (540)
Q Consensus 449 l~~~~Q~ll~SAT 461 (540)
++...++|++.-.
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8888888887554
No 161
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.28 E-value=0.00049 Score=79.86 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=91.9
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|+++|...=-.+. +--|....||-||||+..||++-..+. |.-|-||+-+-.||..=.+++..+.
T Consensus 138 ~~ydVQLiGgivLh--~G~IAEM~TGEGKTLvatlp~yLnAL~------------G~gVHvVTvNDYLA~RDaewm~p~y 203 (1025)
T PRK12900 138 VPYDVQLIGGIVLH--SGKISEMATGEGKTLVSTLPTFLNALT------------GRGVHVVTVNDYLAQRDKEWMNPVF 203 (1025)
T ss_pred cccchHHhhhHHhh--cCCccccCCCCCcchHhHHHHHHHHHc------------CCCcEEEeechHhhhhhHHHHHHHH
Confidence 46667765543343 445788999999999999998765543 3347788889999999888888888
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhcc------ccCCCccEEEEeCCcccC
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~~------~~l~~i~~LVlDEad~ll 433 (540)
.+ .++.+.++..+....+.... -.|||+.+|..-|- ++|+.+. .....+.|.||||+|.++
T Consensus 204 ~f-lGLtVg~i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 204 EF-HGLSVGVILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HH-hCCeeeeeCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 76 78999998776665544333 35899999997663 4444322 123567899999999865
No 162
>PRK10536 hypothetical protein; Provisional
Probab=97.27 E-value=0.0054 Score=61.84 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH------
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ------ 360 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q------ 360 (540)
++..-+..|...+..+.....+++.+++|+|||+..+..+++.+.... ..+++|.-|+.+....
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~----------~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD----------VDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----------eeEEEEeCCCCCchhhhCcCCC
Confidence 455668889999998888888899999999999987777776654321 2346666666442211
Q ss_pred -----HHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh-c-CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 361 -----VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL-Q-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 361 -----i~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l-~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
+.-.+.-+.. .+. .+.|.. ....+ . ..-.|-|.... +++... | .-.+||||||+.+-
T Consensus 126 ~~~eK~~p~~~pi~D---~L~--~~~~~~----~~~~~~~~~~~~Iei~~l~----ymRGrt--l-~~~~vIvDEaqn~~ 189 (262)
T PRK10536 126 DIAEKFAPYFRPVYD---VLV--RRLGAS----FMQYCLRPEIGKVEIAPFA----YMRGRT--F-ENAVVILDEAQNVT 189 (262)
T ss_pred CHHHHHHHHHHHHHH---HHH--HHhChH----HHHHHHHhccCcEEEecHH----HhcCCc--c-cCCEEEEechhcCC
Confidence 1111111110 000 001111 11111 0 11234444322 333222 2 23689999998774
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 434 NDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 434 ~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
...+..++..++.+.++|++.-
T Consensus 190 -----~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 190 -----AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred -----HHHHHHHHhhcCCCCEEEEeCC
Confidence 2678888899888888777644
No 163
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.27 E-value=0.0019 Score=69.32 Aligned_cols=126 Identities=20% Similarity=0.253 Sum_probs=82.7
Q ss_pred CCcHHHHHHHHHHHcC-----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G-----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.+-|+|.+.+--+... .--|+.-..|.|||.-...-++..+ .+...|+++|+.+| .|..++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-------------~ra~tLVvaP~VAl-mQW~nE 249 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-------------DRAPTLVVAPTVAL-MQWKNE 249 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------------ccCCeeEEccHHHH-HHHHHH
Confidence 4677888766443322 2345667889999975433333311 23349999999997 577888
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-------------cccCCCcc--EEEEeCC
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-------------ILQLINLR--CAILDEV 429 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-------------~~~l~~i~--~LVlDEa 429 (540)
+..+.. ..+++.+.+|.... ...+.+. +.|++.+|...+....+.. ...|.+++ .+|+|||
T Consensus 250 I~~~T~--gslkv~~YhG~~R~-~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEA 325 (791)
T KOG1002|consen 250 IERHTS--GSLKVYIYHGAKRD-KNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEA 325 (791)
T ss_pred HHHhcc--CceEEEEEeccccc-CCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhh
Confidence 888765 35666666665433 3334443 5899999999988777542 11244555 4899999
Q ss_pred cccC
Q 009212 430 DILF 433 (540)
Q Consensus 430 d~ll 433 (540)
|-+-
T Consensus 326 H~IK 329 (791)
T KOG1002|consen 326 HNIK 329 (791)
T ss_pred cccc
Confidence 9987
No 164
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.25 E-value=0.00098 Score=75.55 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=80.1
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH---Hhhh-c--C-CCCceEE
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC---RSLS-K--C-GVPFRSM 378 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l---~~l~-~--~-~~~l~v~ 378 (540)
-|+=|.+.||+|||++|+=-|+..-.+ ..-.+-||+||+.+.-.-++..+ .+.+ + + +..+...
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~----------YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~ 144 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK----------YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESY 144 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH----------hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEE
Confidence 378889999999999998666543222 34567999999987655433332 2222 1 1 1233332
Q ss_pred EEeCCcchHHHHHhhcCCCcEEEeChHHHHH------HHHhcccc--------------CCCcc-EEEEeCCcccCCCCC
Q 009212 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMF------LIKEGILQ--------------LINLR-CAILDEVDILFNDED 437 (540)
Q Consensus 379 ~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~------ll~~~~~~--------------l~~i~-~LVlDEad~ll~d~~ 437 (540)
+.- ...... .-.-.+.+.+|+.|-..+.. ++...... +..++ .+||||-|+|.+|.-
T Consensus 145 i~~-~~~~~~-~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k 222 (985)
T COG3587 145 IYD-EDIEKF-KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDK 222 (985)
T ss_pred eec-hHHHHH-hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchH
Confidence 221 111111 11223457777777655531 22211111 12222 689999999995433
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccCCHHHHH
Q 009212 438 FEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (540)
Q Consensus 438 f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~ 468 (540)
+...+..+. .--++=|+||++.+..+
T Consensus 223 ~~~~i~~l~-----pl~ilRfgATfkd~y~~ 248 (985)
T COG3587 223 TYGAIKQLN-----PLLILRFGATFKDEYNN 248 (985)
T ss_pred HHHHHHhhC-----ceEEEEecccchhhhcC
Confidence 333333331 23366799999987653
No 165
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.19 E-value=0.0028 Score=71.69 Aligned_cols=142 Identities=18% Similarity=0.247 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcC
Q 009212 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (540)
Q Consensus 292 tpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~ 371 (540)
.+.|+.|+-..+..+-+++.++.|+|||... .-++..+.+.. .....++++++||..-|..+.+.+......
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~-------~~~~~~i~l~APTgkAA~rL~e~~~~~~~~ 225 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA-------DGERCRIRLAAPTGKAAARLTESLGKALRQ 225 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc-------CCCCcEEEEECCcHHHHHHHHHHHHhhhhc
Confidence 5899999999999899999999999999753 23333332210 112356889999999888887766543220
Q ss_pred CCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHH------HhccccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI------KEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 372 ~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll------~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
.++. ...... ...-..|-.+|+... ..+....-.+++|||||+-++ | ...+..+
T Consensus 226 -~~~~----------~~~~~~----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv--d---~~lm~~l 285 (615)
T PRK10875 226 -LPLT----------DEQKKR----IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV--D---LPMMARL 285 (615)
T ss_pred -cccc----------hhhhhc----CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc--c---HHHHHHH
Confidence 1110 000000 011122323332211 111122335689999999544 3 4667788
Q ss_pred HHhCCCCCcEEEEecc
Q 009212 446 ISSSPVTAQYLFVTAT 461 (540)
Q Consensus 446 l~~l~~~~Q~ll~SAT 461 (540)
++.++..+++|++.=.
T Consensus 286 l~al~~~~rlIlvGD~ 301 (615)
T PRK10875 286 IDALPPHARVIFLGDR 301 (615)
T ss_pred HHhcccCCEEEEecch
Confidence 8888888998888654
No 166
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.16 E-value=0.002 Score=70.79 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~d-vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
.+.+-|+.|+...++.++ .++.+|+|+|||.....-+.+.+.. +.++|+.+||.+-+.-+.+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~------------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ------------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc------------CCeEEEEcCchHHHHHHHHHhc
Confidence 567789999999888866 5667999999998855555444432 4579999999998888877543
No 167
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.15 E-value=0.0054 Score=69.07 Aligned_cols=143 Identities=16% Similarity=0.270 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcC
Q 009212 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC 371 (540)
Q Consensus 292 tpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~ 371 (540)
...|+.|+..++..+-+++.++.|+|||... ..++..+.... ......++++.+||-.-|..+.+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~------~~~~~~~I~l~APTGkAA~rL~e~~~~~~~- 218 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQS------PKQGKLRIALAAPTGKAAARLAESLRKAVK- 218 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhc------cccCCCcEEEECCcHHHHHHHHHHHHhhhc-
Confidence 3789999999999999999999999999752 33333333221 001135799999999888877766654321
Q ss_pred CCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHH------hccccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 372 GVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIK------EGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 372 ~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~------~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
.+.. . ..... ...+-..|-.+|+.... ........+++||||||=++ + ...+..|
T Consensus 219 --~l~~---~-----~~~~~----~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv--d---~~l~~~l 279 (586)
T TIGR01447 219 --NLAA---A-----EALIA----ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV--D---LPLMAKL 279 (586)
T ss_pred --cccc---c-----hhhhh----ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC--C---HHHHHHH
Confidence 1100 0 00000 01111233333332211 11112335789999999544 3 3467778
Q ss_pred HHhCCCCCcEEEEecc
Q 009212 446 ISSSPVTAQYLFVTAT 461 (540)
Q Consensus 446 l~~l~~~~Q~ll~SAT 461 (540)
++.++...++|++.=.
T Consensus 280 l~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 280 LKALPPNTKLILLGDK 295 (586)
T ss_pred HHhcCCCCEEEEECCh
Confidence 8888888898888654
No 168
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.14 E-value=0.0039 Score=70.98 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHHHcC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 289 LRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
..+++.|..|+..++.. ..++|.+|+|+|||.... .++..+.. .+.++|+++||..-|.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~-----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK-----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH-----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999998876 578899999999996643 33333332 245899999999999998888775
No 169
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.07 E-value=0.001 Score=77.54 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=88.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|+++|...= +.-.+--|....||-||||+..+|+.-..+. |.-|-||+.+-.||..=.+++..+.
T Consensus 169 ~~yDVQliGg--ivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~------------GkgVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 169 VHYDVQLIGG--VVLHQGKIAEMATGEGKTLVATLPVYLNALT------------GNGVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred cccchHHhhh--hhhcCCceeeecCCCCchhHHHHHHHHHHHc------------CCCcEEEEechhhhhccHHHHHHHH
Confidence 4556665443 3333456789999999999999998766554 3347788899999998888888887
Q ss_pred cCCCCceEEEEeC-CcchHHHHHhhcCCCcEEEeChHHHH-HHHHhccc------cCCCccEEEEeCCcccC
Q 009212 370 KCGVPFRSMVVTG-GFRQKTQLENLQEGVDVLIATPGRFM-FLIKEGIL------QLINLRCAILDEVDILF 433 (540)
Q Consensus 370 ~~~~~l~v~~l~G-g~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~~~------~l~~i~~LVlDEad~ll 433 (540)
.+ .++.+.++.. +....+.... -.|||..+|..-|- ++|+.+.. ....+.|.||||+|.++
T Consensus 235 ~f-LGLsvg~i~~~~~~~~~rr~a--Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 235 EF-HGLSVDCIDKHQPNSEARRKA--YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HH-hCCceeecCCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 76 6889988765 3333332222 35899999997663 44443321 23457899999999865
No 170
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.04 E-value=0.011 Score=58.44 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=91.9
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~---G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
+|.-+..|..++-.+.. ++ -.++.|.+....+.+ |.|.+.+.-+|.|||-+ .+|++..++.+ ..
T Consensus 4 ~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd----------g~ 70 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD----------GS 70 (229)
T ss_pred CCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC----------CC
Confidence 45555566777655433 33 578999998888774 68999999999999977 67888776643 23
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEE--eCCcch--------HHHHHhhcCCCcEEEeChHHHHHHHHh--
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--TGGFRQ--------KTQLENLQEGVDVLIATPGRFMFLIKE-- 413 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l--~Gg~~~--------~~q~~~l~~~~dIlVaTP~rL~~ll~~-- 413 (540)
.-+.+++| ++|..|.++.++.-...-.+-++..+ .=.... ....+.....-.|+++||+.++.+.-.
T Consensus 71 ~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~l 149 (229)
T PF12340_consen 71 RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGL 149 (229)
T ss_pred cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHH
Confidence 35666666 57999999888764321111122221 111111 111112223346999999998755311
Q ss_pred -----ccc-----------cCCCccEEEEeCCcccC
Q 009212 414 -----GIL-----------QLINLRCAILDEVDILF 433 (540)
Q Consensus 414 -----~~~-----------~l~~i~~LVlDEad~ll 433 (540)
+.. .+.....-|+||+|..+
T Consensus 150 e~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 150 ERLQDGKPEEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 100 12334456899999887
No 171
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.04 E-value=0.002 Score=71.61 Aligned_cols=139 Identities=19% Similarity=0.207 Sum_probs=85.5
Q ss_pred CCcHHHHHHHHHHHc-----CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVE-----GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 290 ~ptpiQ~~aip~il~-----G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.+-|+|+.++.-+.- +.--|+...-|-|||+...--|++.-.......-...... .+|||||- .|..|.+.+
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~--~TLII~Pa-Sli~qW~~E 401 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS--KTLIICPA-SLIHQWEAE 401 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC--CeEEeCcH-HHHHHHHHH
Confidence 467899998876652 2346667788999999755444443332222221112222 59999996 578888888
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHH----HHHh--ccccCCCc--cEEEEeCCcccC
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF----LIKE--GILQLINL--RCAILDEVDILF 433 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~----ll~~--~~~~l~~i--~~LVlDEad~ll 433 (540)
+..-... ..++|.+.+|.....-..+.|. .+||+|+|..-+.. =+.. ....|.+| ..||+||||.+-
T Consensus 402 v~~rl~~-n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 402 VARRLEQ-NALSVYLYHGPNKREISAKELR-KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHHHHhh-cceEEEEecCCccccCCHHHHh-hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 7765442 3567777776654333344443 48999999876544 1111 12224444 469999999986
No 172
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.00 E-value=0.0064 Score=69.41 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhc----c---C-------------------
Q 009212 290 RPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQG----L---S------------------- 339 (540)
Q Consensus 290 ~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~----~---~------------------- 339 (540)
.|++.|...+..++ ...+.++..|||+|||++.|...+.......... . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 57888877665544 5679999999999999998766665443221000 0 0
Q ss_pred CC----CCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 340 KS----TSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 340 ~~----~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
.. .-..|+++|-.-|..-..|+.+++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 00 012577888888887777877777765
No 173
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.99 E-value=0.011 Score=70.18 Aligned_cols=126 Identities=18% Similarity=0.149 Sum_probs=77.0
Q ss_pred CCCCCCcHHHHHHHHHHHcCCc-EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~d-vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.|+ .+++-|.+|+..++.+++ +++.+..|+|||.+ +-.++..+.. .+.+++.++||---|..+.+.
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----------~G~~V~~~ApTGkAA~~L~e~ 409 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----------AGYEVRGAALSGIAAENLEGG 409 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----------cCCeEEEecCcHHHHHHHhhc
Confidence 344 699999999999998765 67789999999975 3333333322 256799999998766544321
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHH
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~ 444 (540)
.++.. .|-.+|+.-...+...+...++|||||+-++- ...+..
T Consensus 410 --------tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~-----~~~m~~ 452 (988)
T PRK13889 410 --------SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG-----TRQLER 452 (988)
T ss_pred --------cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC-----HHHHHH
Confidence 11110 02222221112223346677899999997543 234555
Q ss_pred HHHhC-CCCCcEEEEecc
Q 009212 445 LISSS-PVTAQYLFVTAT 461 (540)
Q Consensus 445 Il~~l-~~~~Q~ll~SAT 461 (540)
|++.. +...++|++.=+
T Consensus 453 LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 453 VLSHAADAGAKVVLVGDP 470 (988)
T ss_pred HHHhhhhCCCEEEEECCH
Confidence 65543 456788887654
No 174
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.89 E-value=0.0067 Score=67.30 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=58.8
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 285 ~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
..|+.+++.-|..|+.+++...=.|+++|.|+|||..-.--+++.+.. ....+|+.+|+.--+.|+...
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----------cCCceEEEcccchhHHHHHHH
Confidence 357778999999999999998899999999999998855444443332 355699999999999998887
Q ss_pred HHhh
Q 009212 365 CRSL 368 (540)
Q Consensus 365 l~~l 368 (540)
+.+.
T Consensus 474 Ih~t 477 (935)
T KOG1802|consen 474 IHKT 477 (935)
T ss_pred HHhc
Confidence 7654
No 175
>PF13245 AAA_19: Part of AAA domain
Probab=96.88 E-value=0.0044 Score=50.84 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=39.4
Q ss_pred HHHHHHcCCc-EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 298 AFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 298 aip~il~G~d-vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
++...+.+.. ++|.+|.|||||...+--+...+... ... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-------~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAAR-------ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHh-------cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443333444 55599999999966443333333211 112 567999999999999998888
No 176
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.83 E-value=0.0019 Score=57.24 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=12.9
Q ss_pred cCCcEEEEcCCCCCchhhcH
Q 009212 304 EGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayl 323 (540)
.++.+++.|++|+|||.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 34678999999999997643
No 177
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.79 E-value=0.022 Score=66.11 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcc
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~P 353 (540)
+++..+......++ .+++-|++|+..++.+ +-+++.++.|+|||... -.++..+.. .+..+++++|
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~-----------~g~~V~~~Ap 404 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA-----------AGYRVIGAAL 404 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh-----------CCCeEEEEeC
Confidence 34444333322333 6899999999998874 56788999999999652 223333322 2567999999
Q ss_pred CHHHHHHHH
Q 009212 354 TAELASQVL 362 (540)
Q Consensus 354 treLa~Qi~ 362 (540)
|---|..+.
T Consensus 405 Tg~Aa~~L~ 413 (744)
T TIGR02768 405 SGKAAEGLQ 413 (744)
T ss_pred cHHHHHHHH
Confidence 987665543
No 178
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.68 E-value=0.012 Score=69.05 Aligned_cols=159 Identities=15% Similarity=0.179 Sum_probs=98.0
Q ss_pred CcHHHHHHHHH--HH-cC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 291 PSQIQAMAFPP--VV-EG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 291 ptpiQ~~aip~--il-~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
++.+|++.+.= ++ .. -+-|+|--.|-|||+--+.-+..-..+.+. ........-.|||||. .|+-....++.
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s---~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS---ESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc---cchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 46678877643 33 22 388999999999998644333322222210 0011122338999996 68888888888
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHH
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il 446 (540)
+++.+ +++...+|.-..+...+.-.+..+|+|++.+.+.+-+.. +.-....|+|+||-|.|- +-...+...+
T Consensus 1052 kf~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVik---N~ktkl~kav 1123 (1549)
T KOG0392|consen 1052 KFFPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIK---NSKTKLTKAV 1123 (1549)
T ss_pred Hhcch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceec---chHHHHHHHH
Confidence 88753 677777777665555555455689999999887522211 011234589999999986 3334444445
Q ss_pred HhCCCCCcEEEEeccC
Q 009212 447 SSSPVTAQYLFVTATL 462 (540)
Q Consensus 447 ~~l~~~~Q~ll~SATl 462 (540)
+.+....+ +.+|.|.
T Consensus 1124 kqL~a~hR-LILSGTP 1138 (1549)
T KOG0392|consen 1124 KQLRANHR-LILSGTP 1138 (1549)
T ss_pred HHHhhcce-EEeeCCC
Confidence 55544444 5567775
No 179
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.59 E-value=0.028 Score=49.39 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
++.+++.+++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999953
No 180
>PRK06526 transposase; Provisional
Probab=96.57 E-value=0.007 Score=61.17 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.0
Q ss_pred HHcCCcEEEEcCCCCCchhhcH
Q 009212 302 VVEGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayl 323 (540)
+..++++++.+|+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3467899999999999997643
No 181
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.0033 Score=68.32 Aligned_cols=66 Identities=32% Similarity=0.445 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHcC-----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G-----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.|+.-|-+||..+..| +.-.+.+-||||||+.. .-++..+. .-+||++|++.||-|++.+
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~-AnVI~~~~--------------rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTM-ANVIAKVQ--------------RPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHH-HHHHHHhC--------------CCeEEEecchhHHHHHHHH
Confidence 5666787888776543 57788899999999863 23333332 2389999999999999999
Q ss_pred HHhhhc
Q 009212 365 CRSLSK 370 (540)
Q Consensus 365 l~~l~~ 370 (540)
++.++.
T Consensus 77 fk~fFP 82 (663)
T COG0556 77 FKEFFP 82 (663)
T ss_pred HHHhCc
Confidence 999864
No 182
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.50 E-value=0.006 Score=62.08 Aligned_cols=70 Identities=20% Similarity=0.206 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhc
Q 009212 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (540)
Q Consensus 291 ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~ 370 (540)
+|+-|.+++.. ...+++|.|..|||||.+.+--++..+.... ....++|+|++|+..|.++...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~--------~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG--------VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS--------STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc--------CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46789998877 6689999999999999986555554443321 2234699999999999999999988643
No 183
>PRK08181 transposase; Validated
Probab=96.47 E-value=0.032 Score=56.90 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.1
Q ss_pred HcCCcEEEEcCCCCCchhhc
Q 009212 303 VEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlay 322 (540)
-.++++++.+|+|+|||...
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred hcCceEEEEecCCCcHHHHH
Confidence 46789999999999999653
No 184
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.42 E-value=0.0093 Score=61.08 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=37.7
Q ss_pred cccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 415 ILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 415 ~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
.......+.+||||||.|- ..-+..+++.++..+...+|++.+.-+
T Consensus 124 ~~~~~~fKiiIlDEcdsmt--sdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMT--SDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhh--HHHHHHHHHHHhccccceEEEEEcCCh
Confidence 3445667899999999997 467888999999988888999887765
No 185
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.081 Score=56.72 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCC-CcEEEEeccCCH-HHHHHHHHh
Q 009212 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVT-AQYLFVTATLPV-EIYNKLVEV 473 (540)
Q Consensus 403 TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~-~Q~ll~SATlp~-~i~~~l~~~ 473 (540)
++..+...+.. +.+.++++||++.++..+......+..++...... .-++++|||... ++.+.+..+
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 34555544443 35788999999998873322334555566555433 467888999864 444444444
No 186
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.35 E-value=0.062 Score=64.35 Aligned_cols=138 Identities=19% Similarity=0.195 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 009212 274 GCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (540)
Q Consensus 274 ~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~-G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~ 352 (540)
++++..+......++ .+++-|.+++..+.. ++=+++.++.|+|||.+ +-++...+.. .+.+++.++
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-----------~G~~V~g~A 432 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-----------AGYRVVGGA 432 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----------cCCeEEEEc
Confidence 345555555444343 699999999998864 45688899999999965 2233333322 356799999
Q ss_pred cCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc
Q 009212 353 PTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 353 PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l 432 (540)
||---|..+.+.. ++... |-.+|+.-...+...+..-++||||||-++
T Consensus 433 pTgkAA~~L~e~~--------Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv 480 (1102)
T PRK13826 433 LAGKAAEGLEKEA--------GIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMV 480 (1102)
T ss_pred CcHHHHHHHHHhh--------CCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccC
Confidence 9977665543211 11111 111111111112234566779999999755
Q ss_pred CCCCCHHHHHHHHHHhCC-CCCcEEEEecc
Q 009212 433 FNDEDFEVALQSLISSSP-VTAQYLFVTAT 461 (540)
Q Consensus 433 l~d~~f~~~i~~Il~~l~-~~~Q~ll~SAT 461 (540)
- ...+..+++..+ ...++|++.=+
T Consensus 481 ~-----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 481 A-----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred C-----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 3 344555565553 46788887654
No 187
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.33 E-value=0.017 Score=66.85 Aligned_cols=169 Identities=20% Similarity=0.254 Sum_probs=95.4
Q ss_pred CCCcHHHHHHHHHHH---c-CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVV---E-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 289 ~~ptpiQ~~aip~il---~-G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.++.++|...+.-+. + .-|-|+.-.+|-|||.. .+.++..+.+. ....||+ |||||+-.|.+=. ..
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~-------K~~~GP~-LvivPlstL~NW~-~E 462 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEH-------KQMQGPF-LIIVPLSTLVNWS-SE 462 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHH-------cccCCCe-EEeccccccCCch-hh
Confidence 367778877765432 2 33677788999999976 45555566554 2345665 7789998875432 22
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHH--HHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHH
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQ--LENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q--~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i 442 (540)
+... .+.+......|....... ........+||++|.+.+.. ....+.--+-.|+||||-|+|- + ..-.+
T Consensus 463 f~kW---aPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmK-N--a~~KL 534 (1157)
T KOG0386|consen 463 FPKW---APSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMK-N--AICKL 534 (1157)
T ss_pred cccc---ccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeeccccccc-c--hhhHH
Confidence 3222 244555555544322211 11112457999999987753 1111122244689999999997 2 22333
Q ss_pred HHHHH-hCCCCCcEEEEeccC----CHHHHHHHHHhCCC
Q 009212 443 QSLIS-SSPVTAQYLFVTATL----PVEIYNKLVEVFPD 476 (540)
Q Consensus 443 ~~Il~-~l~~~~Q~ll~SATl----p~~i~~~l~~~l~~ 476 (540)
...+. +.. ....++++.|. -+++..++.-.+++
T Consensus 535 t~~L~t~y~-~q~RLLLTGTPLQN~LpELWaLLNFlLP~ 572 (1157)
T KOG0386|consen 535 TDTLNTHYR-AQRRLLLTGTPLQNNLPELWALLNFLLPN 572 (1157)
T ss_pred HHHhhcccc-chhhhhhcCChhhhccHHHHHHHHHhccc
Confidence 33333 333 33456667775 25566555554544
No 188
>PRK05642 DNA replication initiation factor; Validated
Probab=96.32 E-value=0.015 Score=57.91 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=28.6
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~ 464 (540)
.+++||||++|.+.....+...+-.++.........++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 557899999998863344556667777655443334556666543
No 189
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=96.29 E-value=0.014 Score=68.80 Aligned_cols=158 Identities=18% Similarity=0.262 Sum_probs=93.8
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 289 ~~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
..++.+|...+.-++ .+.|+|+.-..|-|||+- .+..|..+.... ...|| .||++|.-.+.. ....
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~-------~~~gp-flvvvplst~~~-W~~e 438 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL-------QIHGP-FLVVVPLSTITA-WERE 438 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh-------hccCC-eEEEeehhhhHH-HHHH
Confidence 477888888776544 678999999999999964 222333332221 12344 477788766432 3344
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhc----C-----CCcEEEeChHHHHHHHHhccccCC--CccEEEEeCCcccC
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----E-----GVDVLIATPGRFMFLIKEGILQLI--NLRCAILDEVDILF 433 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~-----~~dIlVaTP~rL~~ll~~~~~~l~--~i~~LVlDEad~ll 433 (540)
+.... .+++.+++|...-...++.+. . ..++|++|.+.++.-- -.|+ .-.+++|||||+|-
T Consensus 439 f~~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 439 FETWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----AELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred HHHHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH----hhhccCCcceeeecHHhhcC
Confidence 44442 568888888876655554442 1 3789999998775322 2233 34689999999997
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEeccC-CHHHHH
Q 009212 434 NDEDFEVALQSLISSSPVTAQYLFVTATL-PVEIYN 468 (540)
Q Consensus 434 ~d~~f~~~i~~Il~~l~~~~Q~ll~SATl-p~~i~~ 468 (540)
++ ...+-..+..+.... .|++|.|. -..|.+
T Consensus 511 N~---~~~l~~~l~~f~~~~-rllitgTPlQNsikE 542 (1373)
T KOG0384|consen 511 ND---ESKLYESLNQFKMNH-RLLITGTPLQNSLKE 542 (1373)
T ss_pred ch---HHHHHHHHHHhcccc-eeeecCCCccccHHH
Confidence 32 222223344443333 36667774 334433
No 190
>PRK06893 DNA replication initiation factor; Validated
Probab=96.28 E-value=0.015 Score=57.71 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=32.1
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCC-CCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~-~~Q~ll~SATlp~~i 466 (540)
.+.++|||||+|.+..+..+...+..++..... ..+++++|++.++..
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 467899999999987444455556666655432 456778888875543
No 191
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.08 E-value=0.019 Score=64.12 Aligned_cols=151 Identities=22% Similarity=0.276 Sum_probs=96.3
Q ss_pred HHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 293 QIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 293 piQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
.+|.+.+.- .-.|-|-|+.-..|-|||.- .+.++.+|.+.. .--|| -|||+|.-.| .+...++
T Consensus 570 EYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~-------nIwGP-FLVVtpaStL----~NWaqEi 636 (1185)
T KOG0388|consen 570 EYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETH-------NIWGP-FLVVTPASTL----HNWAQEI 636 (1185)
T ss_pred HHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhc-------cCCCc-eEEeehHHHH----hHHHHHH
Confidence 346555433 33678999999999999976 566677776542 12244 4777886655 4455555
Q ss_pred hcCCCCceEEEEeCCcchHHHHHhh---------cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHH
Q 009212 369 SKCGVPFRSMVVTGGFRQKTQLENL---------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFE 439 (540)
Q Consensus 369 ~~~~~~l~v~~l~Gg~~~~~q~~~l---------~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~ 439 (540)
.++.+.+++.-..|+......++++ ..+.||+|+|...+..- .+.+.--.-.|+|+|||..+-+ ...
T Consensus 637 srFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKS--SsS 712 (1185)
T KOG0388|consen 637 SRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKS--SSS 712 (1185)
T ss_pred HHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhh--hhh
Confidence 5555789999999988776666553 34689999998765411 1111112356899999998863 333
Q ss_pred HHHHHHHHhCCCCCcEEEEeccC
Q 009212 440 VALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 440 ~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
.....++.. +.+-.++++.|.
T Consensus 713 ~RWKtLLsF--~cRNRLLLTGTP 733 (1185)
T KOG0388|consen 713 SRWKTLLSF--KCRNRLLLTGTP 733 (1185)
T ss_pred hHHHHHhhh--hccceeeecCCc
Confidence 344444443 234458888885
No 192
>PRK08727 hypothetical protein; Validated
Probab=96.03 E-value=0.025 Score=56.27 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCC-CCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~-~~Q~ll~SATlp~~i 466 (540)
.++++|||||+|.+..+......+-+++..... ..++|+.|...|.+.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 355789999999887333333344445444322 334454444444443
No 193
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.02 E-value=0.024 Score=56.43 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=26.4
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHhCC-CC-CcEEEEeccCCH
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLISSSP-VT-AQYLFVTATLPV 464 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-~~-~Q~ll~SATlp~ 464 (540)
+++|||||+|.+..+..+...+..++.... .. .++++ |++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~-ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI-TGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE-eCCCCh
Confidence 468999999998744455666666655442 22 35555 555543
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.072 Score=56.79 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=34.2
Q ss_pred EeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 401 VaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
+-+++.+...+.+ +.+.++++||.+-....+......+..+.........++++|||...+..
T Consensus 200 ~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 200 VKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred cCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 3344444444432 34568899999976542323334444443322333457888999865443
No 195
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.95 E-value=0.23 Score=53.99 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=41.5
Q ss_pred eChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHHHHHHHhC
Q 009212 402 ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 402 aTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
.++..+...+.. +...++||||.+-+...+......+..++... ....-+++++||........+...|
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 345555555543 33678999999976543444555666666632 2235588899998755444444444
No 196
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.94 E-value=0.037 Score=60.97 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=84.2
Q ss_pred HHHHHHHHHHH-----cC----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 293 QIQAMAFPPVV-----EG----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 293 piQ~~aip~il-----~G----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
|+|+..+-.++ .| +.+++.-+-+.|||.....-++..+.-. ...++.+++++++++-|..+++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--------g~~~~~i~~~A~~~~QA~~~f~ 72 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--------GEPGAEIYCAANTRDQAKIVFD 72 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--------CccCceEEEEeCCHHHHHHHHH
Confidence 57888777766 22 4688888999999986554444444321 2346789999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh--ccccCCCccEEEEeCCcccCCCCCHHHH
Q 009212 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDEDFEVA 441 (540)
Q Consensus 364 ~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~--~~~~l~~i~~LVlDEad~ll~d~~f~~~ 441 (540)
.++.+......+.... . ... .... .-.|.....+.+...+.. +...-.+..++|+||+|.+- +......
T Consensus 73 ~~~~~i~~~~~l~~~~--~-~~~---~~~~--~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~-~~~~~~~ 143 (477)
T PF03354_consen 73 EAKKMIEASPELRKRK--K-PKI---IKSN--KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHK-DDELYDA 143 (477)
T ss_pred HHHHHHHhChhhccch--h-hhh---hhhh--ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCC-CHHHHHH
Confidence 9999876432222100 0 000 0000 012222211222211111 12223357899999999987 4334444
Q ss_pred HHHHHHhCCCCCcEEEEec
Q 009212 442 LQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 442 i~~Il~~l~~~~Q~ll~SA 460 (540)
+..-+... .+.|++..|.
T Consensus 144 l~~g~~~r-~~pl~~~IST 161 (477)
T PF03354_consen 144 LESGMGAR-PNPLIIIIST 161 (477)
T ss_pred HHhhhccC-CCceEEEEeC
Confidence 44444432 3556655543
No 197
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.92 E-value=0.034 Score=59.07 Aligned_cols=59 Identities=25% Similarity=0.371 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHH------HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 291 PSQIQAMAFPPV------VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 291 ptpiQ~~aip~i------l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
+++=|++++..+ ..+.++++.++-|+|||+. +-.+..... ..+..+++++||---|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~----------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLR----------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhc----------cccceEEEecchHHHHHhc
Confidence 567799998887 6788999999999999964 333333222 2356799999998766554
No 198
>PRK04296 thymidine kinase; Provisional
Probab=95.89 E-value=0.019 Score=55.25 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=28.9
Q ss_pred eChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 402 ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 402 aTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
..+..+...+.. .-...++|||||++.+- . .++..+++.+......+++++--
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~-~----~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD-K----EQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC-H----HHHHHHHHHHHHcCCeEEEEecC
Confidence 445555555544 23467899999997653 1 22444555533334455555443
No 199
>PHA02533 17 large terminase protein; Provisional
Probab=95.86 E-value=0.071 Score=59.53 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=87.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|.|+|.+.+..+..++=.++..+-..|||.+....++...... .+..+++++|+++-|..+++.++.+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~----------~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN----------KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 57899999988776666667788888999988765555444321 24589999999999999999888765
Q ss_pred cCCCCc-eEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 370 KCGVPF-RSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 370 ~~~~~l-~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
...+.+ +..+.. . ....-.+.+|..|.+.|-.. +...-.+..++|+||+|.+- + +...+..+...
T Consensus 129 e~~P~l~~~~i~~-~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~-~--~~e~~~ai~p~ 194 (534)
T PHA02533 129 ELLPDFLQPGIVE-W---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIP-N--FIDFWLAIQPV 194 (534)
T ss_pred HhCHHHhhcceee-c---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCC-C--HHHHHHHHHHH
Confidence 421211 111100 0 01111224566665554321 11122256789999999875 3 33333333322
Q ss_pred CC--CCCcEEEEeccC
Q 009212 449 SP--VTAQYLFVTATL 462 (540)
Q Consensus 449 l~--~~~Q~ll~SATl 462 (540)
+. ...+++++|+.-
T Consensus 195 lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSGRSSKIIITSTPN 210 (534)
T ss_pred HHcCCCceEEEEECCC
Confidence 22 123555666553
No 200
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.79 E-value=0.077 Score=55.68 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
.+.++++.++||+|||... ..+...+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~ 208 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELL 208 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHH
Confidence 3579999999999999742 23444443
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=95.66 E-value=0.15 Score=53.59 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=40.8
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~ 472 (540)
..++|+||.+.++..+..+...+..+.+...+..-+++++||...+..+.+..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~ 274 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE 274 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH
Confidence 56799999999987555677888888887777778889999987665554443
No 202
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.63 E-value=0.068 Score=52.14 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCCchhhc
Q 009212 304 EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlay 322 (540)
.+.++++.+++|+|||...
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999653
No 203
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.56 E-value=0.032 Score=55.04 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=30.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i 466 (540)
..+++||||++|.+.+.......+-.++..+ ....|+|+.|...|.++
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4688999999999873222344555555544 33567777776776554
No 204
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.54 E-value=0.075 Score=57.18 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=25.4
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i 466 (540)
.+++|||||+|.+.........+-.++..+ ....|+++.|...|.++
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l 246 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKEL 246 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHH
Confidence 356899999998873222233344444333 23466655444344443
No 205
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.54 E-value=0.056 Score=56.74 Aligned_cols=143 Identities=14% Similarity=0.255 Sum_probs=84.1
Q ss_pred CCCCCcHHHHHHHHHHHcCC--cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~--dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
|...-+..|..|+..++... =|.+.++.|||||+.++.+.+......+. ..+.|+--|+..+-..+
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~---------y~KiiVtRp~vpvG~dI--- 292 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR---------YRKIIVTRPTVPVGEDI--- 292 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh---------hceEEEecCCcCccccc---
Confidence 56566777999999888753 35667899999999999888888776532 34677777776553221
Q ss_pred HHhhhcCCCCceEEEEeCCc--chHHHHHhhcCCCcEEE----eChHHHHHHHHhccccCCC----------ccEEEEeC
Q 009212 365 CRSLSKCGVPFRSMVVTGGF--RQKTQLENLQEGVDVLI----ATPGRFMFLIKEGILQLIN----------LRCAILDE 428 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~--~~~~q~~~l~~~~dIlV----aTP~rL~~ll~~~~~~l~~----------i~~LVlDE 428 (540)
+.+-|.. .+..++..+..+-..+. ++-+.|..++.+..+.+.. =.++||||
T Consensus 293 -------------GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDE 359 (436)
T COG1875 293 -------------GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDE 359 (436)
T ss_pred -------------CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEeh
Confidence 1111111 01111111111000111 1123444455444333222 14799999
Q ss_pred CcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
|..+- ...+..|+.+......++++.
T Consensus 360 aQNLT-----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 360 AQNLT-----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred hhccC-----HHHHHHHHHhccCCCEEEEcC
Confidence 98875 457889999988888877754
No 206
>PRK06921 hypothetical protein; Provisional
Probab=95.50 E-value=0.16 Score=51.74 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.+.++++.+++|+|||... ..+...+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 3678999999999999643 3334444
No 207
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.47 E-value=0.076 Score=60.75 Aligned_cols=66 Identities=29% Similarity=0.420 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHHcC-----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G-----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.|+..|..+|..+..+ +..++.+-||||||+... .++..+ +..+|||+|+..+|.|++..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a-~~~~~~--------------~~p~Lvi~~n~~~A~ql~~e 73 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA-NVIAQV--------------NRPTLVIAHNKTLAAQLYNE 73 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH-HHHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 6888999999887543 366789999999997633 222221 22489999999999999999
Q ss_pred HHhhhc
Q 009212 365 CRSLSK 370 (540)
Q Consensus 365 l~~l~~ 370 (540)
++.+..
T Consensus 74 l~~f~p 79 (655)
T TIGR00631 74 FKEFFP 79 (655)
T ss_pred HHHhCC
Confidence 999864
No 208
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.46 E-value=0.08 Score=57.85 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=25.5
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i 466 (540)
.+++|||||+|.+.........+-.++..+ ....|+++.|...|.++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l 258 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKEL 258 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHH
Confidence 567899999999863222233344444333 23456555444444443
No 209
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.04 Score=63.46 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=91.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|..+|.- -.+.....-++-..||-|||++..+|+.-..+ .+-.+.++.-.-.||..-..++..+.
T Consensus 80 ~~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL------------~gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 80 RHFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL------------AGKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred ChhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHHhc------------CCCCcEEeeehHHhhhhCHHHHHHHH
Confidence 34445544 34444456778899999999999999864433 23458888899999999899998888
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHH-HHHHhc------cccCCCccEEEEeCCcccC
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFM-FLIKEG------ILQLINLRCAILDEVDILF 433 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-~ll~~~------~~~l~~i~~LVlDEad~ll 433 (540)
.+ .++.+++...+....+....+. |||..+|-..|- ++++-+ ......+.+-|+||+|-++
T Consensus 146 ~~-LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EF-LGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HH-cCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 76 7899999998887776655553 899999997763 333221 1123457889999999765
No 210
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.40 E-value=0.098 Score=57.26 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i 466 (540)
.++++|||||+|.+.........+..++..+ ....|+|+.|-..|..+
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 4677999999998863223444555555443 23456665555445443
No 211
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.40 E-value=0.11 Score=56.61 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=27.7
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYN 468 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~~ 468 (540)
.+++|||||+|.+.+.......+..++..+ ....|+|+.|..-|.++..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHH
Confidence 467899999999873322333444444333 2345666555555555433
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.3 Score=52.43 Aligned_cols=70 Identities=4% Similarity=0.040 Sum_probs=41.2
Q ss_pred EeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC-HHHHHHHH
Q 009212 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP-VEIYNKLV 471 (540)
Q Consensus 401 VaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp-~~i~~~l~ 471 (540)
+.+|..+.+.+..-. .-.+.++|+||-+=+...+......+..+++...+..-++.+|||.- .++.+.+.
T Consensus 302 ~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 302 VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred cCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 346777766664311 11257899999998766443344555555555444445677899865 45444443
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.36 E-value=0.032 Score=48.41 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+..+++.+|+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 56899999999999975
No 214
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.32 E-value=0.071 Score=62.32 Aligned_cols=133 Identities=22% Similarity=0.220 Sum_probs=84.6
Q ss_pred CCCcHHHHHHHHHHH-----cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 289 ~~ptpiQ~~aip~il-----~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
..+.++|.+.+.-+. .+.+.++....|.|||+..+..+.. +... .....+.++|+||+- ++.++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~-------~~~~~~~~liv~p~s-~~~nw~~ 407 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLES-------IKVYLGPALIVVPAS-LLSNWKR 407 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhc-------ccCCCCCeEEEecHH-HHHHHHH
Confidence 456777888765533 3567888899999999875544444 2111 111145799999974 5566666
Q ss_pred HHHhhhcCCCCce-EEEEeCCcch----HHHHHhhcCC-----CcEEEeChHHHHHHH-HhccccCCCccEEEEeCCccc
Q 009212 364 NCRSLSKCGVPFR-SMVVTGGFRQ----KTQLENLQEG-----VDVLIATPGRFMFLI-KEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 364 ~l~~l~~~~~~l~-v~~l~Gg~~~----~~q~~~l~~~-----~dIlVaTP~rL~~ll-~~~~~~l~~i~~LVlDEad~l 432 (540)
.+.++. ..++ +....|.... .+....+... .+++++|.+.+...+ ....+.-....++|+||+|.+
T Consensus 408 e~~k~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~i 484 (866)
T COG0553 408 EFEKFA---PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRI 484 (866)
T ss_pred HHhhhC---ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHH
Confidence 676664 3455 6667766541 3333333322 689999999887732 122333446778999999997
Q ss_pred C
Q 009212 433 F 433 (540)
Q Consensus 433 l 433 (540)
-
T Consensus 485 k 485 (866)
T COG0553 485 K 485 (866)
T ss_pred h
Confidence 6
No 215
>PRK08116 hypothetical protein; Validated
Probab=95.24 E-value=0.31 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=17.7
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
.+++.+++|+|||.... .+.+.+.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~ 139 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELI 139 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHH
Confidence 49999999999997543 4555554
No 216
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.16 E-value=0.083 Score=61.24 Aligned_cols=130 Identities=16% Similarity=0.218 Sum_probs=77.8
Q ss_pred CCCCcHHHHHHHHHHHcCCc-EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 288 FLRPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 288 f~~ptpiQ~~aip~il~G~d-vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
+..++.-|++|+-.++..+| .+|.+-+|+|||-..... +..|. ..+.++|+.+-|..-+.-+.-.++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~-----------~~gkkVLLtsyThsAVDNILiKL~ 734 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILV-----------ALGKKVLLTSYTHSAVDNILIKLK 734 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHH-----------HcCCeEEEEehhhHHHHHHHHHHh
Confidence 34678899999999888776 677899999999764332 22222 135678888888776555544444
Q ss_pred hhhcC----C------CCceEEEEeCCcc--hHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 367 SLSKC----G------VPFRSMVVTGGFR--QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 367 ~l~~~----~------~~l~v~~l~Gg~~--~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
.+.-+ | ..++-.+++.+.+ .....+.+.+...|+.+|--.+-+.+ +....++|.|||||-++.
T Consensus 735 ~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 735 GFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccc
Confidence 33210 0 0000011122221 12223344456788888865554332 334568999999999876
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.12 E-value=0.34 Score=48.68 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=29.9
Q ss_pred CCCccEEEEeCCcccCCCCCHHH-HHHHHHHh-CCCCCcEEEEeccCCHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEV-ALQSLISS-SPVTAQYLFVTATLPVEIYNK 469 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~-~i~~Il~~-l~~~~Q~ll~SATlp~~i~~~ 469 (540)
+..+++|||||++... ...+.. .+..|+.. ......+++.|---+.++.+.
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 4478899999999876 333443 34445443 333456666665545555433
No 218
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.09 E-value=0.11 Score=47.08 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=27.3
Q ss_pred CCccEEEEeCCcccCCCC----------CHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 419 INLRCAILDEVDILFNDE----------DFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~----------~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
...+++||||++.+. +. .....+..+..........+++....+
T Consensus 84 ~~~~~lviDe~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 137 (165)
T cd01120 84 GGDDLIILDELTRLV-RALREIREGYPGELDEELRELLERARKGGVTVIFTLQVP 137 (165)
T ss_pred CCCEEEEEEcHHHHH-HHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence 467899999999875 22 224556666666554455555555544
No 219
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.99 E-value=0.14 Score=50.35 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=26.6
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCC-CcEEEEeccCCH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVT-AQYLFVTATLPV 464 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~-~Q~ll~SATlp~ 464 (540)
..++|||||+|.+- ..-...+..++...... ..+++++++.++
T Consensus 90 ~~~~liiDdi~~l~--~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLD--DAQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcC--chHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 46689999999875 23344455555544333 335777777654
No 220
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.93 E-value=0.14 Score=59.98 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
...+++||||+|.|- ..-...|.++++..+....|||++ |-+..+...|.+.
T Consensus 119 ~~~KV~IIDEad~lt--~~a~NaLLK~LEEpP~~~~fIl~t-t~~~kLl~TIrSR 170 (824)
T PRK07764 119 SRYKIFIIDEAHMVT--PQGFNALLKIVEEPPEHLKFIFAT-TEPDKVIGTIRSR 170 (824)
T ss_pred CCceEEEEechhhcC--HHHHHHHHHHHhCCCCCeEEEEEe-CChhhhhHHHHhh
Confidence 467899999999997 345556777778777777777765 5555554444443
No 221
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.93 E-value=0.2 Score=51.93 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=26.9
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
...++|||||+|.+- ......+..+++..+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~--~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALR--EDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCC--HHHHHHHHHHHHhccCCCeEEEEe
Confidence 456789999999885 344556677777666566666544
No 222
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.70 E-value=0.16 Score=55.51 Aligned_cols=49 Identities=6% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~ 467 (540)
..+++|+|||+|.+.+.......+..++..+ ....|+|+.|.+.|.++.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 3678999999999863222334444444332 235676666655565543
No 223
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=94.68 E-value=0.036 Score=60.65 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=59.4
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~ 386 (540)
=++-++||.||||.- +++++... ..++|--|.|-||.++++.+...+ +.+-+++|....
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~a------------ksGvycGPLrLLA~EV~~r~na~g-----ipCdL~TGeE~~ 251 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKSA------------KSGVYCGPLRLLAHEVYDRLNALG-----IPCDLLTGEERR 251 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhhh------------ccceecchHHHHHHHHHHHhhhcC-----CCccccccceee
Confidence 355578999999964 56776543 248999999999999999998774 456666665433
Q ss_pred HHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 387 ~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
...-. .+.++.+=||-+... .-...++.||||+.+|-
T Consensus 252 ~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~ 288 (700)
T KOG0953|consen 252 FVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMR 288 (700)
T ss_pred ecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhc
Confidence 22110 112455555554320 01234556666665554
No 224
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.035 Score=61.27 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=73.0
Q ss_pred EEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH-
Q 009212 310 LADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT- 388 (540)
Q Consensus 310 v~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~- 388 (540)
..+.||||||++..--|++...+. ...-|+.|.....+......+..-.....=+.-.+.+++....-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-----------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ik 70 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-----------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIK 70 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-----------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeee
Confidence 356899999998766666655432 23456666655544443332211000000011111122211110
Q ss_pred ---HHHhhcCCCcEEEeChHHHHHHHHh---cccc---CCCccEE-EEeCCcccCC-------C-----CCHHHHHHHHH
Q 009212 389 ---QLENLQEGVDVLIATPGRFMFLIKE---GILQ---LINLRCA-ILDEVDILFN-------D-----EDFEVALQSLI 446 (540)
Q Consensus 389 ---q~~~l~~~~dIlVaTP~rL~~ll~~---~~~~---l~~i~~L-VlDEad~ll~-------d-----~~f~~~i~~Il 446 (540)
.......+..|.++|-..|...+.+ +.+. |.+.++| +-||||++-. | ..+...+...+
T Consensus 71 kvn~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 71 KVNNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred eecccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 0011234578999999999866543 3333 4444544 5599999863 1 11222222223
Q ss_pred HhCCCCCcEEEEeccCCHH
Q 009212 447 SSSPVTAQYLFVTATLPVE 465 (540)
Q Consensus 447 ~~l~~~~Q~ll~SATlp~~ 465 (540)
+. ++..-.+.+|||.|.+
T Consensus 151 ~~-nkd~~~lef~at~~k~ 168 (812)
T COG3421 151 EQ-NKDNLLLEFSATIPKE 168 (812)
T ss_pred hc-CCCceeehhhhcCCcc
Confidence 22 3355677889999943
No 225
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.45 E-value=0.74 Score=53.91 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=23.7
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCC-CCCcEEEEecc
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTAT 461 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SAT 461 (540)
.+.+|||||+|.|.. .....+..|++... ...+++++..+
T Consensus 869 ~v~IIILDEID~L~k--K~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 869 NVSILIIDEIDYLIT--KTQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred cceEEEeehHhhhCc--cHHHHHHHHHHHhhccCCeEEEEEec
Confidence 456899999999983 23455555555432 23455544333
No 226
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.34 E-value=0.44 Score=50.02 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=28.6
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
..-+++||||||.|- ..-...+.+.++.-|....+|++|.
T Consensus 105 ~~~kv~iI~~a~~m~--~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 105 GGRKVVLIEPAEAMN--RNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred CCCeEEEECChhhCC--HHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 457789999999996 4566677777777665555665443
No 227
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.34 E-value=0.13 Score=51.14 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
.+-+.+|+||||.|- .+..+.+++-++.....++|.+..-+.
T Consensus 112 grhKIiILDEADSMT--~gAQQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT--AGAQQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred CceeEEEeeccchhh--hHHHHHHHHHHHHHcccchhhhhhcch
Confidence 567789999999997 588888998888877777777765543
No 228
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.31 E-value=0.22 Score=54.30 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCchhhc
Q 009212 295 QAMAFPPVVEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 295 Q~~aip~il~G~dvlv~ApTGSGKTlay 322 (540)
....+..+..++++++.+++|+|||...
T Consensus 184 le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 4445566778999999999999999754
No 229
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.29 E-value=0.85 Score=50.00 Aligned_cols=45 Identities=22% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 287 gf~~ptpiQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
-|...+|-|.+-.-. +-.+.+.++..|+|+|||.+.+.-++....
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~ 61 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQL 61 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHH
Confidence 355566767554432 335678999999999999886655555443
No 230
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.25 E-value=0.55 Score=60.14 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
.+++-|.+++..++.. +=.++.++.|+|||.+ +-.++. +.+. .+.++++++||-.-+.++.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~-~~~~----------~G~~V~~lAPTgrAA~~L~e~~g~ 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLH-LASE----------QGYEIQIITAGSLSAQELRQKIPR 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHH-HHHh----------cCCeEEEEeCCHHHHHHHHHHhcc
Confidence 5889999999998875 4578889999999964 223333 3221 356899999999877666544321
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
... ..-..+..+.. ..-..|...++ .....+..-++||||||-++- ...+..|++
T Consensus 497 ~A~--------------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~-----~~~~~~Ll~ 551 (1960)
T TIGR02760 497 LAS--------------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS-----NNELLKLID 551 (1960)
T ss_pred hhh--------------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC-----HHHHHHHHH
Confidence 110 00111111111 11122222332 223345677899999997553 345566665
Q ss_pred hC-CCCCcEEEEecc
Q 009212 448 SS-PVTAQYLFVTAT 461 (540)
Q Consensus 448 ~l-~~~~Q~ll~SAT 461 (540)
.. +...++|++.=+
T Consensus 552 ~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 552 KAEQHNSKLILLNDS 566 (1960)
T ss_pred HHhhcCCEEEEEcCh
Confidence 54 457888888654
No 231
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.22 E-value=0.17 Score=47.65 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=32.7
Q ss_pred EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 308 vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
+++.+++|+|||...+--+...+. .+..++|+. +.+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------------~g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------------RGEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------------CCCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 688999999999764433333332 244577775 4567778877777663
No 232
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.19 E-value=0.44 Score=53.98 Aligned_cols=139 Identities=12% Similarity=0.140 Sum_probs=85.5
Q ss_pred HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCC-CCceEEEE
Q 009212 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCG-VPFRSMVV 380 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~-~~l~v~~l 380 (540)
....+-.++..|--.|||+... +++..+... ..+.++++.+|.+.-++.+++.++...... .+..+..+
T Consensus 251 ~fkqk~tVflVPRR~GKTwivv-~iI~~ll~s---------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 251 HFRQRATVFLVPRRHGKTWFLV-PLIALALAT---------FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred HhhccceEEEecccCCchhhHH-HHHHHHHHh---------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 4455788899999999998755 666655532 236789999999999999999998875421 11112222
Q ss_pred eCCcchHHHHHhhcCCC--cEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEE
Q 009212 381 TGGFRQKTQLENLQEGV--DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458 (540)
Q Consensus 381 ~Gg~~~~~q~~~l~~~~--dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~ 458 (540)
.| ... .-.+.+|+ -|.++|- -..+.+.-..+++||||||+.+- +..+...+ -.+.. .++++|++
T Consensus 321 kG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk-~~al~~il-p~l~~--~n~k~I~I 386 (738)
T PHA03368 321 KG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIR-PDAVQTIM-GFLNQ--TNCKIIFV 386 (738)
T ss_pred cC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCC-HHHHHHHH-HHHhc--cCccEEEE
Confidence 22 111 01122232 4555432 11223444578999999999886 43333333 33332 37899999
Q ss_pred eccCCH
Q 009212 459 TATLPV 464 (540)
Q Consensus 459 SATlp~ 464 (540)
|.|-..
T Consensus 387 SS~Ns~ 392 (738)
T PHA03368 387 SSTNTG 392 (738)
T ss_pred ecCCCC
Confidence 999654
No 233
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.16 E-value=0.24 Score=57.86 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=62.8
Q ss_pred CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC------HHHHH
Q 009212 395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP------VEIYN 468 (540)
Q Consensus 395 ~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp------~~i~~ 468 (540)
....|+++||..|..-+-.+.+.+..|..|||||||++.+ ..-...|.++.+.-++..-+.+|||... ..+.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 3457999999999866666789999999999999999994 4445555566666667888999999975 35555
Q ss_pred HHHHhCCCceEE
Q 009212 469 KLVEVFPDCKVV 480 (540)
Q Consensus 469 ~l~~~l~~~~~i 480 (540)
.+.+.+-.-..+
T Consensus 85 vmk~L~i~~v~l 96 (814)
T TIGR00596 85 KMRNLFLRHVYL 96 (814)
T ss_pred HHHHhCcCeEEE
Confidence 555554433333
No 234
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.10 E-value=0.51 Score=48.64 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=33.0
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhC
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
..++|||||+|.+. .......+..+++..+...++|+.+ +-+..+...+...+
T Consensus 100 ~~~vliiDe~d~l~-~~~~~~~L~~~le~~~~~~~~Ilt~-n~~~~l~~~l~sR~ 152 (316)
T PHA02544 100 GGKVIIIDEFDRLG-LADAQRHLRSFMEAYSKNCSFIITA-NNKNGIIEPLRSRC 152 (316)
T ss_pred CCeEEEEECccccc-CHHHHHHHHHHHHhcCCCceEEEEc-CChhhchHHHHhhc
Confidence 45789999999984 2335566777777777667766644 43333433344433
No 235
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.07 E-value=0.34 Score=55.83 Aligned_cols=71 Identities=20% Similarity=0.117 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++-|++|+- ....+++|.|..|||||.+..--+...+... .....++|+|+.|+..|..+.+.+...
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~--------~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARG--------QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhC--------CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 478999999884 3446789999999999987543333333221 112347999999999999999988775
Q ss_pred h
Q 009212 369 S 369 (540)
Q Consensus 369 ~ 369 (540)
.
T Consensus 265 l 265 (684)
T PRK11054 265 L 265 (684)
T ss_pred c
Confidence 4
No 236
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.07 E-value=0.11 Score=60.24 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++-|++++.+ ....++|.|..|||||.+..-=+...+.... -...++|+|+-|+..|.++.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~--------v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN--------ASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4589999998854 3468999999999999884433333332211 12346999999999999999999887
Q ss_pred hc
Q 009212 369 SK 370 (540)
Q Consensus 369 ~~ 370 (540)
..
T Consensus 73 ~~ 74 (715)
T TIGR01075 73 LG 74 (715)
T ss_pred hc
Confidence 53
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.06 E-value=0.27 Score=50.70 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=35.5
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
.+++++++|+.|||.. +.++...............|-+++-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 5999999999999973 44444321111111222347778888887776666665544
No 238
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.06 E-value=0.45 Score=47.97 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.++++.+|+|+|||...
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 58999999999999754
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.02 E-value=0.38 Score=48.61 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=32.7
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
.+.++++.+++|+|||.... ++.+.+... + .-++.+++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~~-----------g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLKA-----------G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHc-----------C-CeEEEEEHHHHHHHHHHHHh
Confidence 67899999999999997533 333344321 2 34556677777766655443
No 240
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.00 E-value=0.14 Score=58.69 Aligned_cols=66 Identities=35% Similarity=0.461 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHHHHcC-----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G-----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.|++.|..+|..+..+ +..++.+.+||||++.+. .++..+ +..+|||+|+.++|.|+++.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~--------------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL--------------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 7999999999887533 257799999999998743 222211 23499999999999999999
Q ss_pred HHhhhc
Q 009212 365 CRSLSK 370 (540)
Q Consensus 365 l~~l~~ 370 (540)
++.+..
T Consensus 77 L~~~~~ 82 (652)
T PRK05298 77 FKEFFP 82 (652)
T ss_pred HHHhcC
Confidence 998864
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.97 E-value=0.17 Score=49.18 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=37.6
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
.+.++++||-+-+...+......+..+++......-++.+|||...+....+..+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 4577899999977653444566777777777666778888999976555444443
No 242
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.91 E-value=0.57 Score=49.86 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
.++++.+++|+|||.+
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999975
No 243
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.62 Score=49.65 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=24.1
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCC-CCcEEEEeccC
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTATL 462 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~-~~Q~ll~SATl 462 (540)
..-++|+||+|.|....+ ..+-.|++.... ..++.++.-+-
T Consensus 123 ~~~IvvLDEid~L~~~~~--~~LY~L~r~~~~~~~~v~vi~i~n 164 (366)
T COG1474 123 KTVIVILDEVDALVDKDG--EVLYSLLRAPGENKVKVSIIAVSN 164 (366)
T ss_pred CeEEEEEcchhhhccccc--hHHHHHHhhccccceeEEEEEEec
Confidence 444789999999994333 566666655432 24444443333
No 244
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.097 Score=55.38 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=36.2
Q ss_pred ccEEEEeCCcccCCCCC----------HHHHHHHHHHhC----CCCCcEEEEecc-CCHHHHHHHHHhCCCceEEeCCC
Q 009212 421 LRCAILDEVDILFNDED----------FEVALQSLISSS----PVTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPG 484 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~----------f~~~i~~Il~~l----~~~~Q~ll~SAT-lp~~i~~~l~~~l~~~~~i~~~~ 484 (540)
-..+.|||+|.+.+..+ +...+...+.-+ .....++++.|| +|=+|-+.+++.|-+-.+|-.+.
T Consensus 305 PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~ 383 (491)
T KOG0738|consen 305 PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD 383 (491)
T ss_pred CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC
Confidence 34689999999875221 111111111111 122446677777 78778788888776555554443
No 245
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.85 E-value=0.26 Score=55.71 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCC-CCCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SATlp~~i 466 (540)
.++++||||++|.+.........+-+++..+. ...|+|+.|-..|.++
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 35789999999998743333444555555443 3567776555555554
No 246
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.82 E-value=1.7 Score=50.40 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=40.6
Q ss_pred EeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHH
Q 009212 401 IATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (540)
Q Consensus 401 VaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l 470 (540)
+.+|..+.+.+.. +.+.++|+||=+=+...+......+..+.....+..-+++++||.-.+..+.+
T Consensus 248 ~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 248 VKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred cCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 3467776666653 34567899998877653434445555555444455668888998764444333
No 247
>PF13173 AAA_14: AAA domain
Probab=93.80 E-value=0.56 Score=41.83 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=28.0
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEecc
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SAT 461 (540)
.-.+|+|||+|.+- ++...+..+.... ...++++.+..
T Consensus 61 ~~~~i~iDEiq~~~---~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP---DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc---cHHHHHHHHHHhc-cCceEEEEccc
Confidence 55689999999985 6888888888865 35666665443
No 248
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.77 E-value=1.3 Score=45.22 Aligned_cols=69 Identities=4% Similarity=0.063 Sum_probs=40.1
Q ss_pred ChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC-HHHHHHHHH
Q 009212 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP-VEIYNKLVE 472 (540)
Q Consensus 403 TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp-~~i~~~l~~ 472 (540)
+|..+...+.. .......+++|||-+=+...+......+..++....+..-++.+|||.. .++.+.+..
T Consensus 138 ~~~~l~~~l~~-l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 138 DEAAMTRALTY-FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred CHHHHHHHHHH-HHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 56556555432 1112357899999998775333344445555555544445777899975 455554443
No 249
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.76 E-value=0.76 Score=51.96 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
...+++||||+|.|. .+-...+.+.++..+....+|+.+ |-+..+...|.+.
T Consensus 117 ~~~KVvIIDEah~Lt--~~A~NALLK~LEEpp~~~~fIL~t-te~~kll~TI~SR 168 (584)
T PRK14952 117 SRYRIFIVDEAHMVT--TAGFNALLKIVEEPPEHLIFIFAT-TEPEKVLPTIRSR 168 (584)
T ss_pred CCceEEEEECCCcCC--HHHHHHHHHHHhcCCCCeEEEEEe-CChHhhHHHHHHh
Confidence 467899999999997 344445566667666666666655 6555555444433
No 250
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=93.48 E-value=0.23 Score=57.30 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=73.6
Q ss_pred HHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh-----hhcC-C
Q 009212 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-----LSKC-G 372 (540)
Q Consensus 299 ip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~-----l~~~-~ 372 (540)
+..+....-+++.+.||.||+.-+.-.+|..+..+ .......+.+--|+|-.+.-+.+.+.+ ++.. +
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~n-------s~g~~~na~v~qprrisaisiaerva~er~e~~g~tvg 459 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLEN-------SNGASFNAVVSQPRRISAISLAERVANERGEEVGETCG 459 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhc-------cccccccceeccccccchHHHHHHHHHhhHHhhccccc
Confidence 34445556678889999999999988888888764 223345577777888877777665533 2210 0
Q ss_pred CCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 373 VPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 373 ~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
..++... ..+.. ---|+.+|-+-++.++... +..+.++++||.|..-
T Consensus 460 y~vRf~S---a~prp--------yg~i~fctvgvllr~~e~g---lrg~sh~i~deiherd 506 (1282)
T KOG0921|consen 460 YNVRFDS---ATPRP--------YGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERD 506 (1282)
T ss_pred ccccccc---ccccc--------ccceeeeccchhhhhhhhc---ccccccccchhhhhhc
Confidence 1111100 01110 1258999999998888765 3467789999999753
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=93.45 E-value=1.1 Score=45.50 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.2
Q ss_pred HHcCCcEEEEcCCCCCchhhcH
Q 009212 302 VVEGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayl 323 (540)
+..|.++++.+|+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4568899999999999996543
No 252
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.39 E-value=0.63 Score=57.88 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
.+++-|.+|+..++.. +-++|.+..|+|||...- .++..+... ....+..++.++||-.-+.++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l-------~e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNML-------PESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHH-------hhccCceEEEEechHHHHHHHH
Confidence 6899999999999865 678889999999997631 222222110 0123567889999988766653
No 253
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.37 E-value=1.4 Score=46.69 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=33.1
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
...+++||||||.|- ..-...+.++++..+....++++| +-|..+...+.
T Consensus 140 g~~rVviIDeAd~l~--~~aanaLLk~LEEpp~~~~fiLit-~~~~~llptIr 189 (351)
T PRK09112 140 GNWRIVIIDPADDMN--RNAANAILKTLEEPPARALFILIS-HSSGRLLPTIR 189 (351)
T ss_pred CCceEEEEEchhhcC--HHHHHHHHHHHhcCCCCceEEEEE-CChhhccHHHH
Confidence 456789999999995 455566777777766666666665 44444433333
No 254
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.36 E-value=0.24 Score=60.76 Aligned_cols=122 Identities=19% Similarity=0.251 Sum_probs=76.5
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhc
Q 009212 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (540)
Q Consensus 291 ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~ 370 (540)
.|+-|.++|. ..+++++|.|..|||||.+..--++..+... ..--++|+|+=|+..|.++...+++...
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~---------~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG---------VDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC---------CCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5889999985 4688999999999999998666666655422 1113599999999999998888876432
Q ss_pred CCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHH-HHHhccccCCCc--cEEEEeCCcc
Q 009212 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMF-LIKEGILQLINL--RCAILDEVDI 431 (540)
Q Consensus 371 ~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~-ll~~~~~~l~~i--~~LVlDEad~ 431 (540)
. .+.- -........|+..+ ...-|+|-..+.. +++.... .-.| .+=|.||...
T Consensus 71 ~--~~~~--~p~~~~L~~q~~~~---~~~~i~Tihsf~~~~~~~~~~-~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 71 K--ALQQ--EPNSKHLRRQLALL---NTANISTLHSFCLKVIRKHYY-LLDLDPSFRILTDTEQ 126 (1232)
T ss_pred H--HHhc--CchhHHHHHHHhhc---cCCeEeeHHHHHHHHHHHhhh-hcCCCCCceeCCHHHH
Confidence 1 0000 00111122333222 3567899988874 4554322 2222 3456888775
No 255
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.33 E-value=0.56 Score=49.07 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=31.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEecc
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SAT 461 (540)
...+++|||+||.|- ..-...+.++++.-+....+|++|..
T Consensus 112 g~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 112 GIAQVVIVDPADAIN--RAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CCcEEEEeccHhhhC--HHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 467899999999996 56677777888887777777777653
No 256
>PRK12377 putative replication protein; Provisional
Probab=93.32 E-value=0.95 Score=45.64 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
..++++.+++|+|||... ..+.+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 368999999999999642 33344443
No 257
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.31 E-value=0.77 Score=46.44 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCchhhc
Q 009212 296 AMAFPPVVEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 296 ~~aip~il~G~dvlv~ApTGSGKTlay 322 (540)
++++..+..|+++++.+++|+|||...
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344555678999999999999999764
No 258
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.28 E-value=1.4 Score=41.16 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=31.4
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEecc
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SAT 461 (540)
...+++||||||.|- ......+.+.++.-+....++++|..
T Consensus 101 ~~~KviiI~~ad~l~--~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT--EEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS---HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhh--HHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 468899999999996 56778888888887767777766654
No 259
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.8 Score=53.81 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
...+++||||||+|- ..-...+.++++.-+....+|+. +|-+..+...|.
T Consensus 118 gk~KViIIDEAh~LT--~eAqNALLKtLEEPP~~vrFILa-TTe~~kLl~TIl 167 (944)
T PRK14949 118 GRFKVYLIDEVHMLS--RSSFNALLKTLEEPPEHVKFLLA-TTDPQKLPVTVL 167 (944)
T ss_pred CCcEEEEEechHhcC--HHHHHHHHHHHhccCCCeEEEEE-CCCchhchHHHH
Confidence 357789999999996 34555666667765656666665 555555544443
No 260
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.23 E-value=0.33 Score=48.93 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=55.8
Q ss_pred HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEe
Q 009212 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~ 381 (540)
+..|.-+++.|++|+|||...+-.+.+.+.. .+..++|+.- -+-..++...+..... +..+......
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-----------~g~~vl~iS~-E~~~~~~~~r~~~~~~-~~~~~~~~~~ 93 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-----------HGVRVGTISL-EEPVVRTARRLLGQYA-GKRLHLPDTV 93 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-----------cCceEEEEEc-ccCHHHHHHHHHHHHh-CCCcccCCcc
Confidence 4567889999999999996544333333221 1445777753 2234444444433211 1111110000
Q ss_pred CCcchHH---HHHhhcCCCcE-EEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 382 GGFRQKT---QLENLQEGVDV-LIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 382 Gg~~~~~---q~~~l~~~~dI-lVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
-.....+ ....+.....+ ++- |+..+...++.-. .-..+++||||.++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~ 153 (271)
T cd01122 94 FIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMV 153 (271)
T ss_pred ccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHh
Confidence 0111111 11222211122 222 4455555544311 12368899999998886
No 261
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.22 E-value=0.3 Score=42.80 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.3
Q ss_pred EEEEcCCCCCchhh
Q 009212 308 CILADQSGSGKTLA 321 (540)
Q Consensus 308 vlv~ApTGSGKTla 321 (540)
+++.+|.|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68899999999964
No 262
>PLN03025 replication factor C subunit; Provisional
Probab=93.20 E-value=1.2 Score=46.29 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=28.7
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
..+++||||+|.|. ......+.++++..+..+.+++. ++.+..+
T Consensus 99 ~~kviiiDE~d~lt--~~aq~aL~~~lE~~~~~t~~il~-~n~~~~i 142 (319)
T PLN03025 99 RHKIVILDEADSMT--SGAQQALRRTMEIYSNTTRFALA-CNTSSKI 142 (319)
T ss_pred CeEEEEEechhhcC--HHHHHHHHHHHhcccCCceEEEE-eCCcccc
Confidence 47899999999997 34456667777766655665554 4433333
No 263
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.18 E-value=0.89 Score=52.55 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=27.9
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
...+++||||+|.|. . .-...+.++++.-+....||+.+ |-+..|
T Consensus 118 gr~KVIIIDEah~LT-~-~A~NALLKtLEEPP~~v~FILaT-td~~KI 162 (830)
T PRK07003 118 ARFKVYMIDEVHMLT-N-HAFNAMLKTLEEPPPHVKFILAT-TDPQKI 162 (830)
T ss_pred CCceEEEEeChhhCC-H-HHHHHHHHHHHhcCCCeEEEEEE-CChhhc
Confidence 357899999999986 3 33444555666655555555544 444443
No 264
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.07 E-value=3 Score=46.53 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=32.6
Q ss_pred ChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC-HHHHHHH
Q 009212 403 TPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP-VEIYNKL 470 (540)
Q Consensus 403 TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp-~~i~~~l 470 (540)
++..+...+.. +.+.++||||.+-....+......+..|.... ...-+++++++.. .++.+.+
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhHHHHHH
Confidence 34445555543 24577899998866542222223333333222 3455777788775 3443333
No 265
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.05 E-value=2.2 Score=45.83 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC-HHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT-AELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt-reLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
++-+.+.+|||-|||....--+....... ....-+||-+-| |-=|..+.+.+-++. ++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~---------~~~kVaiITtDtYRIGA~EQLk~Ya~im----~vp------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK---------KKKKVAIITTDTYRIGAVEQLKTYADIM----GVP------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc---------cCcceEEEEeccchhhHHHHHHHHHHHh----CCc-------
Confidence 78899999999999976432222222111 112234444443 222222222222221 111
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
=.+|-+|.-|...+. .+.+++++.||=+-+=..|......+..++...+.---.+.+|||.-
T Consensus 263 --------------~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K 324 (407)
T COG1419 263 --------------LEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK 324 (407)
T ss_pred --------------eEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc
Confidence 134445655655544 24566788888876654355566677777776655566788899987
Q ss_pred HHHHHHHHHhC
Q 009212 464 VEIYNKLVEVF 474 (540)
Q Consensus 464 ~~i~~~l~~~l 474 (540)
.+....+-..|
T Consensus 325 ~~dlkei~~~f 335 (407)
T COG1419 325 YEDLKEIIKQF 335 (407)
T ss_pred hHHHHHHHHHh
Confidence 55554454444
No 266
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.01 E-value=0.059 Score=51.50 Aligned_cols=124 Identities=17% Similarity=0.231 Sum_probs=54.8
Q ss_pred EEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHH
Q 009212 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKT 388 (540)
Q Consensus 309 lv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~ 388 (540)
++.|+-|-||+.+.-+.+...+.. ...+++|.+|+.+-++.+++.+..-.+. .+++..... ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~-~~~~~~~~~---~~~~ 65 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-----------GKIRILVTAPSPENVQTLFEFAEKGLKA-LGYKEEKKK---RIGQ 65 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------------EEEE-SS--S-HHHHHCC-----------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-----------cCceEEEecCCHHHHHHHHHHHHhhccc-ccccccccc---cccc
Confidence 578999999998765554433221 1246999999999988887776543321 111110000 0000
Q ss_pred HHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 389 QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 389 q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
..........|-.-.|+.+... ....++||||||=.+- .+.+..++...+ .++||.|+.
T Consensus 66 ~~~~~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp-----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 66 IIKLRFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP-----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp -------CCC--B--HHHHCCT-----------SCEEECTGGGS------HHHHHHHHCCSS----EEEEEEEBS
T ss_pred ccccccccceEEEECCHHHHhC-------cCCCCEEEEechhcCC-----HHHHHHHHhhCC----EEEEEeecc
Confidence 0000012345666667655222 2245789999995542 466677765433 578888884
No 267
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.90 E-value=1 Score=56.82 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
.+++-|++|+..++.+ +-++|.+..|+|||.. +-.++..+... ....+..++.++||---|.++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l-------~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL-------PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh-------hcccCceEEEECCcHHHHHHH
Confidence 6899999999999975 5688899999999965 22333333211 012356788899998876654
No 268
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.77 E-value=0.63 Score=53.58 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=85.5
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCC--cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH
Q 009212 283 LKRQNFLRPSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (540)
Q Consensus 283 L~~~gf~~ptpiQ~~aip~il~G~--dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q 360 (540)
+.....+.+..-|.+.+..++..+ -+++.|.-|=|||.+.-+.+....... ...+++|.+|+.+-++.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~----------~~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA----------GSVRIIVTAPTPANVQT 276 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc----------CCceEEEeCCCHHHHHH
Confidence 444445555555666666666543 577889999999999877773322211 14579999999999888
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHH
Q 009212 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEV 440 (540)
Q Consensus 361 i~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~ 440 (540)
++..+.+-... .+++-.+...... ...........|=.-.|.... . .-++||||||=.+- .+
T Consensus 277 Lf~fa~~~l~~-lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp-----lp 338 (758)
T COG1444 277 LFEFAGKGLEF-LGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP-----LP 338 (758)
T ss_pred HHHHHHHhHHH-hCCcccccccccc--ceeeecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC-----hH
Confidence 88776553321 1111111110000 000000011234445554321 1 16789999996553 56
Q ss_pred HHHHHHHhCCCCCcEEEEeccCC
Q 009212 441 ALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 441 ~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
.++.++... +.++||.|+.
T Consensus 339 lL~~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 339 LLHKLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHHHHhhc----CceEEEeeec
Confidence 677777654 4588899984
No 269
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.73 E-value=0.37 Score=51.58 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=74.5
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH-HHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE-LASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre-La~Qi~~~l~~l~~~~~~l~v~~l~Gg~~ 385 (540)
-.++.+..|||||.+..+-++..+... ..+.+++++-++.. |-.-++..+...... .++....-.....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~ 72 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN---------KKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSS 72 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc---------CCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCc
Confidence 357789999999999988888877653 13567999999987 555566666654321 1111100011110
Q ss_pred hHHHHHhhcC-CCcEEEeCh-HHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 386 QKTQLENLQE-GVDVLIATP-GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 386 ~~~q~~~l~~-~~dIlVaTP-~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
+ .+ .+.. +..|++..- +....+. ....+.++.+|||..+- ...+...+.+ ++. +...+.+++|.+.+
T Consensus 73 ~--~i-~~~~~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~-~~~~~~l~~r-lr~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 73 M--EI-KILNTGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLT-FEDIKELIPR-LRE-TGGKKFIIFSSNPE 141 (396)
T ss_pred c--EE-EecCCCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcC-HHHHHHHHHH-hhc-cCCccEEEEEcCcC
Confidence 0 00 0112 345555443 2222211 12336889999999885 3334444434 222 22233577888865
Q ss_pred H
Q 009212 464 V 464 (540)
Q Consensus 464 ~ 464 (540)
.
T Consensus 142 ~ 142 (396)
T TIGR01547 142 S 142 (396)
T ss_pred C
Confidence 3
No 270
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.66 E-value=3.4 Score=47.26 Aligned_cols=152 Identities=11% Similarity=0.099 Sum_probs=82.8
Q ss_pred CCcHHHHHHHHHHH---cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVV---EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 290 ~ptpiQ~~aip~il---~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
.|+|.=.+-|..++ ..+=.++.+|-|-|||.+..+.+...+.. .+.+++|.+|...-+.++++.++
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----------~Gi~IlvTAH~~~ts~evF~rv~ 237 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----------LEIDIVVQAQRKTMCLTLYNRVE 237 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----------cCCeEEEECCChhhHHHHHHHHH
Confidence 45666555555544 44678888999999998866555533321 24679999999999999998877
Q ss_pred hhhcC-------CCCceEEEEeCCcch-HHHH-HhhcCC-CcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCC
Q 009212 367 SLSKC-------GVPFRSMVVTGGFRQ-KTQL-ENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE 436 (540)
Q Consensus 367 ~l~~~-------~~~l~v~~l~Gg~~~-~~q~-~~l~~~-~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~ 436 (540)
.+... ....++..+.|+... .-.. .....| ..|...+-. .+...-...++||+|||..+- +
T Consensus 238 ~~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~-~- 308 (752)
T PHA03333 238 TVVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVN-P- 308 (752)
T ss_pred HHHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCC-H-
Confidence 76541 011122222222110 0000 000000 112221111 122222356899999998886 3
Q ss_pred CHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 437 DFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 437 ~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
.....+.-++.. ....++++|.+..
T Consensus 309 ~~l~aIlP~l~~--~~~k~IiISS~~~ 333 (752)
T PHA03333 309 GALLSVLPLMAV--KGTKQIHISSPVD 333 (752)
T ss_pred HHHHHHHHHHcc--CCCceEEEeCCCC
Confidence 333344444433 3566677787764
No 271
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.65 E-value=0.34 Score=50.69 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=42.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 281 ESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 281 ~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
..|.+.|+ +++.|...+.. +..+++++++++|||||| .++-.++..+... ....++++|-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~---------~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ---------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc---------CCCceEEEEcCCCcc
Confidence 34444454 55667777654 557789999999999999 4455555544211 123467888888877
No 272
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.64 E-value=0.22 Score=57.26 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.+++-|++++.. ....++|.|..|||||.+..--+...+.... -...++|+|+.|+..|.++.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899998854 3468899999999999885544444443211 123369999999999999998887764
No 273
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.63 E-value=0.57 Score=48.07 Aligned_cols=47 Identities=28% Similarity=0.426 Sum_probs=32.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~ 468 (540)
...+++||||||.|. ......+.+.++.-+....+++.+- -+..+..
T Consensus 108 ~~~kviiidead~mt--~~A~nallk~lEep~~~~~~il~~n-~~~~il~ 154 (325)
T COG0470 108 GGYKVVIIDEADKLT--EDAANALLKTLEEPPKNTRFILITN-DPSKILP 154 (325)
T ss_pred CCceEEEeCcHHHHh--HHHHHHHHHHhccCCCCeEEEEEcC-Chhhccc
Confidence 578899999999997 4566677777777665666666554 5544443
No 274
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.46 E-value=2.1 Score=46.42 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhC
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
+.+.++++||.+-+...+......+..+.........++++|||........+...|
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f 323 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAY 323 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHh
Confidence 456678888887443312223334444333223345678899998655444444444
No 275
>PRK04195 replication factor C large subunit; Provisional
Probab=92.41 E-value=1.4 Score=48.68 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=29.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~---G~dvlv~ApTGSGKTla 321 (540)
.+|.++-.++.....|... +..... .+.+++.+|+|+|||.+
T Consensus 11 ~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHH
Confidence 5688888888777666442 011112 46899999999999965
No 276
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.41 E-value=0.71 Score=51.40 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=29.3
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVE 465 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~ 465 (540)
...+++||||+|.|. . .....+.+.++..|....+|+.+ |-+..
T Consensus 118 ~~~kV~iIDE~~~ls-~-~a~naLLk~LEepp~~~~fIlat-td~~k 161 (509)
T PRK14958 118 GRFKVYLIDEVHMLS-G-HSFNALLKTLEEPPSHVKFILAT-TDHHK 161 (509)
T ss_pred CCcEEEEEEChHhcC-H-HHHHHHHHHHhccCCCeEEEEEE-CChHh
Confidence 356899999999987 3 33445566777766667777655 43433
No 277
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.39 E-value=0.66 Score=45.47 Aligned_cols=133 Identities=17% Similarity=0.223 Sum_probs=71.8
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCce-------
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFR------- 376 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~------- 376 (540)
.|..+++.+++|+|||...+-.+...+... +-+++|++ +.+-..++.+.++.++- ++.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-----------ge~vlyvs-~ee~~~~l~~~~~s~g~---d~~~~~~~g~ 82 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-----------GEKVLYVS-FEEPPEELIENMKSFGW---DLEEYEDSGK 82 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------T--EEEEE-SSS-HHHHHHHHHTTTS----HHHHHHTTS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-----------CCcEEEEE-ecCCHHHHHHHHHHcCC---cHHHHhhcCC
Confidence 457899999999999976555555555441 22477777 45666777777776642 110
Q ss_pred EEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCC---CCCHHHHHHHHHHhCCCCC
Q 009212 377 SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---DEDFEVALQSLISSSPVTA 453 (540)
Q Consensus 377 v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~---d~~f~~~i~~Il~~l~~~~ 453 (540)
...+......... . -..+..+...+....-. ...+.+|||-...+.. ...+...+..+...+....
T Consensus 83 l~~~d~~~~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~ 151 (226)
T PF06745_consen 83 LKIIDAFPERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRG 151 (226)
T ss_dssp EEEEESSGGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTT
T ss_pred EEEEecccccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCC
Confidence 1111100000000 0 12334444433321111 1237899999988821 2346667777777776566
Q ss_pred cEEEEeccC
Q 009212 454 QYLFVTATL 462 (540)
Q Consensus 454 Q~ll~SATl 462 (540)
.++++++..
T Consensus 152 ~t~llt~~~ 160 (226)
T PF06745_consen 152 VTTLLTSEM 160 (226)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEcc
Confidence 677777763
No 278
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.35 E-value=1.1 Score=51.01 Aligned_cols=40 Identities=20% Similarity=0.444 Sum_probs=26.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
...+++||||+|+|. ...+ ..+.+.++.-+....||+.|.
T Consensus 123 gr~KViIIDEah~Ls-~~Aa-NALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLT-NHAF-NAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcC-HHHH-HHHHHhhccCCCCceEEEEeC
Confidence 457899999999996 3333 445555666555666666654
No 279
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.28 E-value=1.3 Score=49.09 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
....+++||||+|.|. . .-...+.+.++.-+....+|+.+ |-+..+...+.
T Consensus 114 ~~~~KVvIIDEah~Ls-~-~A~NaLLK~LEePp~~v~fIlat-te~~Kl~~tI~ 164 (491)
T PRK14964 114 SSKFKVYIIDEVHMLS-N-SAFNALLKTLEEPAPHVKFILAT-TEVKKIPVTII 164 (491)
T ss_pred cCCceEEEEeChHhCC-H-HHHHHHHHHHhCCCCCeEEEEEe-CChHHHHHHHH
Confidence 3567899999999886 3 33344555566655555555544 54444443333
No 280
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.27 E-value=1.7 Score=45.56 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
...+++|+|++|.|- ......+.++++..+....+|+.|.
T Consensus 112 ~~~kV~iiEp~~~Ld--~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 112 GGLRVILIHPAESMN--LQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred CCceEEEEechhhCC--HHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 567889999999984 6777778888887765555555443
No 281
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.19 E-value=1.5 Score=47.27 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
...+++||||+|.|- ......+.++++.-+....+|+. ||-+..+...|...
T Consensus 116 ~~~kViiIDead~m~--~~aanaLLk~LEep~~~~~fIL~-a~~~~~llpTIrSR 167 (394)
T PRK07940 116 GRWRIVVIEDADRLT--ERAANALLKAVEEPPPRTVWLLC-APSPEDVLPTIRSR 167 (394)
T ss_pred CCcEEEEEechhhcC--HHHHHHHHHHhhcCCCCCeEEEE-ECChHHChHHHHhh
Confidence 467789999999996 34555666666665545555554 44455555444443
No 282
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.19 E-value=1.5 Score=49.32 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=29.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCcEEEEcCCCCCchhhcHHH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLP 325 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~---G~dvlv~ApTGSGKTlayllp 325 (540)
.+|.++--.+.+.+.|+.. +.. ++-.|+++|.|+|||.+.-+-
T Consensus 13 ~~f~~viGq~~v~~~L~~~---------------i~~~~~~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNA---------------IKQGKISHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CcHHhccCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4688886677777666442 112 234788999999999765443
No 283
>CHL00181 cbbX CbbX; Provisional
Probab=92.18 E-value=1.4 Score=45.36 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCCchhhcH
Q 009212 305 GKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayl 323 (540)
|.++++.+|+|+|||.++.
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5579999999999997653
No 284
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.16 E-value=0.44 Score=54.63 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 291 ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
+++-|++++.. ...+++|.|..|||||.+.+--+...+.... ....++|+|+.|+..|.++.+.+.++.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~--------~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG--------YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68889998753 3568999999999999875544444443211 123468999999999999999887754
No 285
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.09 E-value=1.1 Score=51.40 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
...+++||||+|.|- ..-...+.++++..+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls--~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLS--KSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccC--HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999875 233345566666656566666655
No 286
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.08 E-value=1.4 Score=46.54 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=29.5
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEecc
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SAT 461 (540)
-...+++|||+||.|- ..-...+.+.++.-|...-+|++|..
T Consensus 130 ~~~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALN--VAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcC--HHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 3467899999999996 45666777777765555555555543
No 287
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.08 E-value=1.5 Score=47.83 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=32.3
Q ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHH
Q 009212 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~ 472 (540)
++||||.+-++..+......+..+.....+..-++.++|+...+..+.+..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 778888886554233445556666665555666777788877665555544
No 288
>PHA00729 NTP-binding motif containing protein
Probab=92.06 E-value=1.4 Score=43.82 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=38.7
Q ss_pred cEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCC--------CHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHH
Q 009212 398 DVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDE--------DFEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (540)
Q Consensus 398 dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~--------~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~ 469 (540)
..++.+...|+..+..-......+++|||||+=.-+... .|......+ ...++++.|...-|.++...
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aL----rSR~~l~il~~ls~edL~~~ 135 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALI----RTRVSAVIFTTPSPEDLAFY 135 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHH----HhhCcEEEEecCCHHHHHHH
Confidence 456666666666554322222346789999953322111 122233333 23466777777777777776
Q ss_pred HHH
Q 009212 470 LVE 472 (540)
Q Consensus 470 l~~ 472 (540)
+..
T Consensus 136 Lr~ 138 (226)
T PHA00729 136 LRE 138 (226)
T ss_pred HHh
Confidence 655
No 289
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.05 E-value=2 Score=48.79 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=27.5
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
+...+++||||+|.|. . .-...+.+.++..+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls-~-~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLS-T-AAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCC-H-HHHHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999986 2 33445555566666666677655
No 290
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.04 E-value=0.68 Score=46.01 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=37.3
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|..+++.+++|+|||...+-.+...+. .+-+++|++ +.+-..|+.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~------------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ------------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4578999999999999765444444432 244688887 5677778888777664
No 291
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.03 E-value=1.8 Score=49.36 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=27.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
...+++||||+|.|. ...| ..+.+.++..+....+|+.+ |-+..+.
T Consensus 123 g~~KV~IIDEvh~Ls-~~a~-NaLLKtLEEPP~~~~fIL~T-td~~kil 168 (618)
T PRK14951 123 GRFKVFMIDEVHMLT-NTAF-NAMLKTLEEPPEYLKFVLAT-TDPQKVP 168 (618)
T ss_pred CCceEEEEEChhhCC-HHHH-HHHHHhcccCCCCeEEEEEE-CCchhhh
Confidence 457899999999987 3233 33445555545445555544 5555443
No 292
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.90 E-value=2.3 Score=48.62 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l 470 (540)
...+++||||+|+|. ..-...+.++++.-+....||+. +|-+..+...|
T Consensus 118 g~~KV~IIDEah~Ls--~~a~NALLKtLEEPp~~v~FIL~-Tt~~~kLl~TI 166 (647)
T PRK07994 118 GRFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLA-TTDPQKLPVTI 166 (647)
T ss_pred CCCEEEEEechHhCC--HHHHHHHHHHHHcCCCCeEEEEe-cCCccccchHH
Confidence 357789999999986 33444555566665555555555 44444443333
No 293
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.79 E-value=1.3 Score=43.42 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=31.8
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
.|..+++.+++|+|||...+.-+.+.+.. +..++++.- .+.+.++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~------------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD------------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc------------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 46789999999999986544333333321 335666653 44555666555554
No 294
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.61 Score=49.84 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
+|+++.+|+|+|||++
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999975
No 295
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.63 E-value=0.57 Score=49.08 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=38.4
Q ss_pred CcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHH
Q 009212 291 PSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (540)
Q Consensus 291 ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa 358 (540)
+++.|...+.. +..+++++++++||||||.. +-.++..+... ...-+++++=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~---------~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS---------APEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC---------CCCceEEEecCCcccc
Confidence 56667766655 45677999999999999964 34455544321 1233677777788873
No 296
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.62 E-value=1.9 Score=43.08 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHH----cCC-cEEEEcCCCCCchhh
Q 009212 290 RPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLA 321 (540)
Q Consensus 290 ~ptpiQ~~aip~il----~G~-dvlv~ApTGSGKTla 321 (540)
.+++.+.+++..+. .+. .+++.+++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 35556666665543 233 588999999999965
No 297
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=91.57 E-value=1.3 Score=51.77 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcC---CCCceEEEEe
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVT 381 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~---~~~l~v~~l~ 381 (540)
|--+|+..=.|-|||+-.. .+++.++... ...--+||||||...+ +-.++.|.+.... ...+.|..+.
T Consensus 696 GsGcILAHcMGLGKTlQVv-tflhTvL~c~-------klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~ 766 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVV-TFLHTVLLCD-------KLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELA 766 (1567)
T ss_pred CcchHHHHhhcccceehhh-HHHHHHHHhh-------ccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhh
Confidence 3456665667999998633 3333332211 1234579999998664 3355556555431 1245555544
Q ss_pred CCcchHHHHHhh---cCCCcEEEeChHHHHHHHHhcc-------------ccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 382 GGFRQKTQLENL---QEGVDVLIATPGRFMFLIKEGI-------------LQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 382 Gg~~~~~q~~~l---~~~~dIlVaTP~rL~~ll~~~~-------------~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
.-.........| .+.-.|+|.-.+.+..|..... +.-..-++||+||+|.|-++ ...+...
T Consensus 767 ~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe---ksa~Ska 843 (1567)
T KOG1015|consen 767 TVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE---KSAVSKA 843 (1567)
T ss_pred hccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc---hHHHHHH
Confidence 333333333222 2223555555665554442211 11223579999999988732 2233333
Q ss_pred HHhCCCCCcEEEEecc-CCHHHH
Q 009212 446 ISSSPVTAQYLFVTAT-LPVEIY 467 (540)
Q Consensus 446 l~~l~~~~Q~ll~SAT-lp~~i~ 467 (540)
+..+.-.++ |+++.| +-..+.
T Consensus 844 m~~irtkRR-I~LTGTPLQNNLm 865 (1567)
T KOG1015|consen 844 MNSIRTKRR-IILTGTPLQNNLM 865 (1567)
T ss_pred HHHHHhhee-EEeecCchhhhhH
Confidence 333333444 555565 444443
No 298
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.53 E-value=0.34 Score=54.46 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH-HHHH
Q 009212 290 RPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL-SNCR 366 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~-~~l~ 366 (540)
..+|+|.+...++..- +.|++..++-+|||.+.+..+...+... ...+|++.||.++|.+.. ..+.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-----------P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-----------PGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-----------CCCEEEEEEcHHHHHHHHHHHHH
Confidence 5688888888776643 5788999999999996554444333322 234899999999999976 4565
Q ss_pred hhhcCCCCceEEEEe---CCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 367 SLSKCGVPFRSMVVT---GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~---Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
.+....+.++-.+.- ...........+. +..|.++....- ..+.-..+++|++||+|.+-
T Consensus 85 Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHhCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 555432222211111 0111111122222 334444432211 12233468899999999995
No 299
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.30 E-value=1.6 Score=44.79 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=25.9
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
..++|||||+|.+. . .....+..+++..+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~-~-~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLT-S-DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCC-H-HHHHHHHHHHhcCCCCCeEEEEe
Confidence 46789999999986 2 34456666676666666666654
No 300
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.25 E-value=1.1 Score=49.25 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=28.1
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
..+++||||||.|- ......+...++.-+... ++++.+|-+..+...|...
T Consensus 121 ~~KV~IIDEah~Ls--~~A~NALLKtLEEPp~~v-iFILaTte~~kI~~TI~SR 171 (484)
T PRK14956 121 KYKVYIIDEVHMLT--DQSFNALLKTLEEPPAHI-VFILATTEFHKIPETILSR 171 (484)
T ss_pred CCEEEEEechhhcC--HHHHHHHHHHhhcCCCce-EEEeecCChhhccHHHHhh
Confidence 46789999999886 333444455555433333 3334555454444334433
No 301
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.24 E-value=0.58 Score=50.39 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=34.7
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCC-CCCcEEEEeccCCHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEIY 467 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SATlp~~i~ 467 (540)
++++|+||.++.+.++......+-+++..+. ...|+++.|...|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999998854455566666666553 34588888888887765
No 302
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.22 E-value=3 Score=46.13 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCCchhhcHHHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPV 326 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpi 326 (540)
|+-+.+++|||+|||.....-+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4567889999999998754433
No 303
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.20 E-value=3.2 Score=43.13 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
++.+++.+++|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999965
No 304
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.12 E-value=3.6 Score=43.82 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=29.1
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEecc
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SAT 461 (540)
...+++||||+|.|- ..-...+.++++..+..+.+|++|..
T Consensus 140 ~~~kVviIDead~m~--~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMN--ANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcC--HHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 456789999999985 45666777777776655666665544
No 305
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.09 E-value=1.3 Score=56.82 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
..+++.|++|+..++.+ +-++|.+..|+|||.... .++..+... . ...+..++.++||-.-|.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~-~~~~~i~~~-~------~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLE-SRYKPVLQA-F------ESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHH-HHHHHHHHH-H------HhcCCeEEEEeChHHHHHHHH
Confidence 36899999999998876 456778999999996541 222222111 0 013567899999977665553
No 306
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.05 E-value=2 Score=45.01 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=30.0
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
...+++|||+||.|- ......+.++++.-|....+++.|.
T Consensus 106 g~~KV~iI~~a~~m~--~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 106 GGNKVVYIQGAERLT--EAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCceEEEEechhhhC--HHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 467899999999996 4667777778887666666666554
No 307
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.04 E-value=4.4 Score=43.53 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCchhhcH
Q 009212 305 GKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayl 323 (540)
++-+++++|+|+|||....
T Consensus 206 ~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5678899999999997543
No 308
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.03 E-value=1.3 Score=46.55 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
....+++|||+||.|- ..-...+.++++.-|...-+|++|.
T Consensus 106 ~g~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 106 LGGAKVVWLPDAALLT--DAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCceEEEEcchHhhC--HHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 3567899999999996 4677777777777665566666554
No 309
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.02 E-value=0.092 Score=47.25 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=13.2
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
++++.+|+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 589999999999964
No 310
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.98 E-value=3.7 Score=45.68 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=28.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC---CcEEEEcCCCCCchhhcHH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLL 324 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G---~dvlv~ApTGSGKTlayll 324 (540)
.+|.++--.+.+++.|.. .+..+ +.+|+++|.|+|||.++.+
T Consensus 18 ~~f~dliGq~~vv~~L~~---------------ai~~~ri~~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSY---------------TILNDRLAGGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHH
Confidence 468877667776665533 13344 3799999999999976543
No 311
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.93 E-value=2.7 Score=44.62 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=27.7
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
...+++||||+|.|. . .-...+.+.++..+....+++.+ |-+..+.
T Consensus 118 ~~~kviIIDEa~~l~-~-~a~naLLk~lEe~~~~~~fIl~t-~~~~~l~ 163 (363)
T PRK14961 118 SRFKVYLIDEVHMLS-R-HSFNALLKTLEEPPQHIKFILAT-TDVEKIP 163 (363)
T ss_pred CCceEEEEEChhhcC-H-HHHHHHHHHHhcCCCCeEEEEEc-CChHhhh
Confidence 456799999999986 3 22334555555555555666654 4344443
No 312
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.89 E-value=1.2 Score=46.80 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=17.9
Q ss_pred HHHcCCcEEEEcCCCCCchhh
Q 009212 301 PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTla 321 (540)
.+..++++++.+++|+|||..
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHH
Confidence 355689999999999999964
No 313
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.87 E-value=2.9 Score=47.29 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
....+++||||+|.|. .+-...+.++++..+....+|+.+ |-+..+...+.
T Consensus 117 ~~~~KVvIIdev~~Lt--~~a~naLLk~LEepp~~~~fIl~t-~~~~kl~~tI~ 167 (576)
T PRK14965 117 RSRYKIFIIDEVHMLS--TNAFNALLKTLEEPPPHVKFIFAT-TEPHKVPITIL 167 (576)
T ss_pred cCCceEEEEEChhhCC--HHHHHHHHHHHHcCCCCeEEEEEe-CChhhhhHHHH
Confidence 3567899999999886 344456666666655555555544 55555544443
No 314
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.83 E-value=1.2 Score=46.84 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=17.9
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.++++.+|+|+|||.+ +-.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5899999999999965 33444444
No 315
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.73 E-value=1.5 Score=50.05 Aligned_cols=45 Identities=24% Similarity=0.377 Sum_probs=28.4
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
...+++||||+|+|. ..-...+.++++..+....+|+. +|-+..+
T Consensus 117 gk~KV~IIDEVh~LS--~~A~NALLKtLEEPP~~v~FILa-Ttd~~kI 161 (702)
T PRK14960 117 GRFKVYLIDEVHMLS--THSFNALLKTLEEPPEHVKFLFA-TTDPQKL 161 (702)
T ss_pred CCcEEEEEechHhcC--HHHHHHHHHHHhcCCCCcEEEEE-ECChHhh
Confidence 356789999999886 33445566667766655555554 4544333
No 316
>PF05729 NACHT: NACHT domain
Probab=90.69 E-value=1.9 Score=39.07 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=25.1
Q ss_pred EEEEeCCcccCCCCC------HHHHHHHHHHh-CCCCCcEEEEeccCC
Q 009212 423 CAILDEVDILFNDED------FEVALQSLISS-SPVTAQYLFVTATLP 463 (540)
Q Consensus 423 ~LVlDEad~ll~d~~------f~~~i~~Il~~-l~~~~Q~ll~SATlp 463 (540)
+||||-+|.+..... +...+..++.. ++...++++.|.+-.
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~ 131 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRA 131 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCCh
Confidence 389999999984222 33455556655 455667666665443
No 317
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=90.68 E-value=0.47 Score=55.06 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++-|++++.. ....++|.|..|||||.+..-=+...+.... -...++|+|+-|+..|.++.+.+.++
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~--------v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN--------ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC--------CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 3589999998853 3468999999999999885433333332111 12346999999999999999998886
Q ss_pred hc
Q 009212 369 SK 370 (540)
Q Consensus 369 ~~ 370 (540)
..
T Consensus 78 ~~ 79 (721)
T PRK11773 78 LG 79 (721)
T ss_pred hc
Confidence 53
No 318
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.62 E-value=4.8 Score=43.75 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=33.7
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCC---CCCcEEEEeccCCHHHHHHHHHhC
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP---VTAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~---~~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
...++||||=+-++..+......+..++.... ...-++++|||...+....+...+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 45688999987666433344445555555442 224578889999764444444444
No 319
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.59 E-value=0.89 Score=47.08 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 281 ESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 281 ~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
..|.+.|. +++-|...+.. +..+++++++++||||||.. +-.++..+... ...-+++++--+.||
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~---------~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN---------DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc---------CCCceEEEECCchhh
Confidence 33444443 44455555544 55678999999999999964 34455444321 123468888888887
No 320
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.22 E-value=1.2 Score=48.88 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=34.4
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|.-+++.+++|+|||...+ -++..+.. .+.+++|+. +.+...|+...+..++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~l-q~a~~~a~-----------~g~~vlYvs-~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLL-QVAARLAA-----------AGGKVLYVS-GEESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHH-HHHHHHHh-----------cCCeEEEEE-ccccHHHHHHHHHHcC
Confidence 35678889999999997533 33322221 244688877 4566677777776664
No 321
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.22 E-value=4.6 Score=41.58 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=65.3
Q ss_pred EEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH-HH---HHHHhhhcCCCCceEEEEeCCc
Q 009212 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ-VL---SNCRSLSKCGVPFRSMVVTGGF 384 (540)
Q Consensus 309 lv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q-i~---~~l~~l~~~~~~l~v~~l~Gg~ 384 (540)
++.++.|+|||.+..+.++..+.... ....++++ ++..-+.+ +. ..+..+......+........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~---------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 69 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP---------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDR- 69 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS---------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SS-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC---------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCC-
Confidence 46789999999998887777765431 12455555 66555444 22 333333321111111101111
Q ss_pred chHHHHHhhcCCCcEEEeChHHH--HHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 385 RQKTQLENLQEGVDVLIATPGRF--MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 385 ~~~~q~~~l~~~~dIlVaTP~rL--~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
.. .+.++..|.+.+-+.- ..-++. ..+.++++||+-.+- +..+...+...+.... ....+++|.|.
T Consensus 70 ~~-----~~~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~s~p~ 137 (384)
T PF03237_consen 70 KI-----ILPNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVP-DDAFSELIRRLRATWG-GSIRMYISTPP 137 (384)
T ss_dssp EE-----EETTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGST-THHHHHHHHHHHHCST-T--EEEEEE--
T ss_pred cE-----EecCceEEEEeccccccccccccc-----cccceeeeeecccCc-hHHHHHHHHhhhhccc-CcceEEeecCC
Confidence 00 0145666666664321 122221 467799999998886 4445555555544433 22222555543
Q ss_pred --CHHHHHHHHHhCCCc
Q 009212 463 --PVEIYNKLVEVFPDC 477 (540)
Q Consensus 463 --p~~i~~~l~~~l~~~ 477 (540)
...+...+.....+.
T Consensus 138 ~~~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 138 NPGGWFYEIFQRNLDDD 154 (384)
T ss_dssp -SSSHHHHHHHHHHCTS
T ss_pred CCCCceeeeeehhhcCC
Confidence 344445555555444
No 322
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.12 E-value=0.91 Score=47.64 Aligned_cols=81 Identities=23% Similarity=0.246 Sum_probs=54.8
Q ss_pred CCccccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC-cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCC
Q 009212 262 GDFFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSK 340 (540)
Q Consensus 262 ~~~~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~-dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~ 340 (540)
++.++...|..-.|.-. .|- .|..+++-|...+..+..++ |+++++.||||||.. ++.+...
T Consensus 134 Gp~lsIRKf~k~~ltl~---dli--~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~------- 196 (355)
T COG4962 134 GPTLSIRKFPKIKLTLL---DLI--IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGF------- 196 (355)
T ss_pred CCcccccccccccccHH---HHH--HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhc-------
Confidence 55566677776665533 222 46789999999988877765 999999999999953 2222211
Q ss_pred CCCCCCEEEEEccCHHHHHH
Q 009212 341 STSGSPRVVILAPTAELASQ 360 (540)
Q Consensus 341 ~~~~~p~aLIL~PtreLa~Q 360 (540)
. ...-++|.+--|.||-.+
T Consensus 197 i-~~~eRvItiEDtaELql~ 215 (355)
T COG4962 197 I-DSDERVITIEDTAELQLA 215 (355)
T ss_pred C-CCcccEEEEeehhhhccC
Confidence 1 122379999999888444
No 323
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.83 E-value=4.2 Score=46.33 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=27.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
...+++||||+|.|- ..-...+.++++.-+ ..-++++.+|-+..+...+.
T Consensus 118 g~~kVIIIDEad~Lt--~~a~naLLk~LEEP~-~~~ifILaTt~~~kll~TI~ 167 (624)
T PRK14959 118 GRYKVFIIDEAHMLT--REAFNALLKTLEEPP-ARVTFVLATTEPHKFPVTIV 167 (624)
T ss_pred CCceEEEEEChHhCC--HHHHHHHHHHhhccC-CCEEEEEecCChhhhhHHHH
Confidence 456789999999986 233334444444433 33344455555555443333
No 324
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=2.7 Score=43.47 Aligned_cols=132 Identities=21% Similarity=0.325 Sum_probs=73.5
Q ss_pred HHHHHcCC-----cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCC
Q 009212 299 FPPVVEGK-----SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGV 373 (540)
Q Consensus 299 ip~il~G~-----dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~ 373 (540)
+|++..|+ -+++-+|.|+||++ |.-++.. + . + ...+-+.+-.|+.....+-.+|.+
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSY--LAKAVAT---E-A---------n-STFFSvSSSDLvSKWmGESEkLVk--- 215 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSY--LAKAVAT---E-A---------N-STFFSVSSSDLVSKWMGESEKLVK--- 215 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHH--HHHHHHh---h-c---------C-CceEEeehHHHHHHHhccHHHHHH---
Confidence 57788774 69999999999984 3222211 1 0 0 256666666665554433333321
Q ss_pred CceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCC--CCHHHHHHHHHH----
Q 009212 374 PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFND--EDFEVALQSLIS---- 447 (540)
Q Consensus 374 ~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d--~~f~~~i~~Il~---- 447 (540)
.|..+.+.. .-..+.|||+|.|.+. .+-....++|..
T Consensus 216 --------------------------------nLFemARe~-----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLV 258 (439)
T KOG0739|consen 216 --------------------------------NLFEMAREN-----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLV 258 (439)
T ss_pred --------------------------------HHHHHHHhc-----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHH
Confidence 122233322 2346889999988741 122333333322
Q ss_pred hC----CCCCcEEEEecc-CCHHHHHHHHHhCCCceEEeCCCcc
Q 009212 448 SS----PVTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPGMH 486 (540)
Q Consensus 448 ~l----~~~~Q~ll~SAT-lp~~i~~~l~~~l~~~~~i~~~~~~ 486 (540)
++ +..--++++.|| +|=.+-..|++.|..-.+|-.+..+
T Consensus 259 QMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 259 QMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 302 (439)
T ss_pred hhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHH
Confidence 22 224568888998 4655566777777666665555443
No 325
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.61 E-value=3.8 Score=42.00 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
+.++++.+|+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999764
No 326
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.54 E-value=5.2 Score=37.92 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
...-+++||||+|.|. ......+...++..+...-+++++
T Consensus 94 ~~~~kviiide~~~l~--~~~~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMN--EAAANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhC--HHHHHHHHHHhcCCCCCeEEEEEE
Confidence 4567889999999996 234455566666645444555443
No 327
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.33 E-value=2.8 Score=47.46 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=29.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
..-+++||||||.|- .+-...+...++..+...-+|+ .+|-+..+...+.
T Consensus 118 ~~~KVIIIDEad~Lt--~~A~NaLLKtLEEPp~~tvfIL-~Tt~~~KLl~TI~ 167 (605)
T PRK05896 118 FKYKVYIIDEAHMLS--TSAWNALLKTLEEPPKHVVFIF-ATTEFQKIPLTII 167 (605)
T ss_pred CCcEEEEEechHhCC--HHHHHHHHHHHHhCCCcEEEEE-ECCChHhhhHHHH
Confidence 346789999999885 3344556666666554444444 4455555543333
No 328
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.31 E-value=3.2 Score=46.48 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
...+++||||+|.|. . .-...+.+.++..+....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls-~-~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLS-K-SAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCC-H-HHHHHHHHHHhCCCCCEEEEEEe
Confidence 456899999999886 3 33344555666666666677665
No 329
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.24 E-value=4.2 Score=45.72 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=28.0
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
..-+++||||+|.|- ..-...+.+.++..+....+|+.+
T Consensus 118 g~~kViIIDEa~~ls--~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLS--KQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhcc--HHHHHHHHHHHhcCCCCceEEEEE
Confidence 456799999999986 344556667777666666676655
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=89.20 E-value=2.3 Score=43.58 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCCchhhcH
Q 009212 305 GKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayl 323 (540)
++.+++++|||+|||....
T Consensus 194 ~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568889999999997643
No 331
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.20 E-value=4.6 Score=42.28 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=30.0
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEecc
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTAT 461 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SAT 461 (540)
....+++|||+||.|- ..-...+.+.++.-|....+|++|..
T Consensus 106 ~~~~kV~iI~~ae~m~--~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMN--ESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhC--HHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3467899999999996 45667777777776655555555443
No 332
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.18 E-value=0.9 Score=54.44 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=86.5
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHH------hhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEE
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEE------LQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM 378 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~------~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~ 378 (540)
|++++..-..|.|||.+-+.-.+....+.. ............-+|||+|. ++..|.+.++...... .+++.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceEE
Confidence 567788888999999997766555432211 11111122234568999997 5668888888877653 35666
Q ss_pred EEeCCcchH-HHHHhhcCCCcEEEeChHHHHHHHHhc--------------ccc----CCCcc--EEEEeCCcccCCCCC
Q 009212 379 VVTGGFRQK-TQLENLQEGVDVLIATPGRFMFLIKEG--------------ILQ----LINLR--CAILDEVDILFNDED 437 (540)
Q Consensus 379 ~l~Gg~~~~-~q~~~l~~~~dIlVaTP~rL~~ll~~~--------------~~~----l~~i~--~LVlDEad~ll~d~~ 437 (540)
...|=.... .+-..+ -.+|||++|...|..=+.+. ... |-.+. .+++|||.++- .
T Consensus 451 ~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve---s 526 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE---S 526 (1394)
T ss_pred EEechhhhcccCchhh-hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc---c
Confidence 665532111 000112 24899999999887433211 111 22222 38999996554 3
Q ss_pred HHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 438 FEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 438 f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
-.....+++..++. .-.-.+|.|.
T Consensus 527 ssS~~a~M~~rL~~-in~W~VTGTP 550 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHA-INRWCVTGTP 550 (1394)
T ss_pred hHHHHHHHHHHhhh-hceeeecCCc
Confidence 45555555555552 3345667774
No 333
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.94 E-value=6.4 Score=44.98 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=26.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
...+++||||||.|- ..-...+.+.++.-+....+|+. ++-+..+.
T Consensus 120 ~~~KViIIDEad~Lt--~~a~naLLK~LEePp~~tvfIL~-t~~~~~ll 165 (620)
T PRK14948 120 ARWKVYVIDECHMLS--TAAFNALLKTLEEPPPRVVFVLA-TTDPQRVL 165 (620)
T ss_pred CCceEEEEECccccC--HHHHHHHHHHHhcCCcCeEEEEE-eCChhhhh
Confidence 456899999999886 23344555555554444444443 34444433
No 334
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=88.85 E-value=0.76 Score=53.35 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++-|.+++.+ ...+++|.|..|||||.+..-=+...+.... ...-++|+|+-|+..|..+.+.+.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~--------i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN--------VAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC--------CCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4589999998864 3468999999999999885544444443211 11236899999999999998888776
Q ss_pred hc
Q 009212 369 SK 370 (540)
Q Consensus 369 ~~ 370 (540)
..
T Consensus 73 ~~ 74 (726)
T TIGR01073 73 LG 74 (726)
T ss_pred hc
Confidence 43
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=88.64 E-value=6.7 Score=40.04 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=31.7
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCC------CCCcEEEEeccCCHHHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSP------VTAQYLFVTATLPVEIYNKLVE 472 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~------~~~Q~ll~SATlp~~i~~~l~~ 472 (540)
...+++|||=+-++..+......+..+.+..+ ..--+++++||...+....+..
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~ 212 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV 212 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH
Confidence 34667778777666533344455566555444 3455777888876554444433
No 336
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.55 E-value=4.3 Score=40.29 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=34.1
Q ss_pred HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
..|.-+++.+++|+|||...+-.+.. +.+ .+.++++++ +.+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~-----------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYG-FLQ-----------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH-HHh-----------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 45778999999999999753322332 222 245678888 5455566666665543
No 337
>PHA00012 I assembly protein
Probab=88.47 E-value=4.9 Score=42.21 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEcCCCCCchhhcHHHHHHHHH
Q 009212 308 CILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 308 vlv~ApTGSGKTlayllpil~~l~ 331 (540)
-++.+..|+|||+.....++..+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 478899999999887766665554
No 338
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.47 E-value=1.7 Score=48.31 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
.+.+++.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46899999999999975
No 339
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=88.36 E-value=3.7 Score=40.41 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=25.0
Q ss_pred HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 009212 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~ 352 (540)
..|.-+++.|++|+|||.. ++-++..+... .+..++|++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~----------~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAF-ALNIAENIAKK----------QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHH-HHHHHHHHHHh----------CCCceEEEe
Confidence 3566788999999999954 44444333322 144577777
No 340
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.35 E-value=2.5 Score=48.83 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=28.6
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~ 468 (540)
..-+++||||||.|- .+....+...++..|....+|+. +|-+..+..
T Consensus 117 g~~KV~IIDEa~~LT--~~A~NALLKtLEEPP~~tifILa-Tte~~KLl~ 163 (725)
T PRK07133 117 SKYKIYIIDEVHMLS--KSAFNALLKTLEEPPKHVIFILA-TTEVHKIPL 163 (725)
T ss_pred CCCEEEEEEChhhCC--HHHHHHHHHHhhcCCCceEEEEE-cCChhhhhH
Confidence 467789999999886 23444555556655544544544 455544433
No 341
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.31 E-value=0.27 Score=52.46 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=38.1
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
+++++|+||||||.++++|-+... ...+||+=|--|+........+.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~--------------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW--------------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC--------------CCCEEEEccchhHHHHHHHHHHHc
Confidence 589999999999999998876432 235888899999988877776654
No 342
>PRK05973 replicative DNA helicase; Provisional
Probab=88.25 E-value=2.6 Score=42.19 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=39.7
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.+||... ...-+..|.-++|.|++|+|||...+--+.+.+. .+.+++|++ .-+-..|+.+.+..++
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~------------~Ge~vlyfS-lEes~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK------------SGRTGVFFT-LEYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh------------cCCeEEEEE-EeCCHHHHHHHHHHcC
Confidence 3455322 3333455677889999999999754433333332 144577764 3444677777777663
No 343
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.22 E-value=0.66 Score=49.01 Aligned_cols=46 Identities=28% Similarity=0.363 Sum_probs=31.6
Q ss_pred HHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHH
Q 009212 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (540)
Q Consensus 300 p~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa 358 (540)
-++..+++++++++||||||.. +-.++..+. ...+++.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~------------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP------------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccC------------CCCCEEEECCCcccc
Confidence 3456789999999999999954 334443331 133577777888873
No 344
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.99 E-value=1.1 Score=47.76 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=30.5
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
.+|.++|+++.+++.+. ..+..+++++|||||||.. +-.+++.+.
T Consensus 130 ~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 130 PDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred CCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 36778888876654331 2345789999999999964 445555554
No 345
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.97 E-value=0.58 Score=44.37 Aligned_cols=14 Identities=50% Similarity=0.631 Sum_probs=12.9
Q ss_pred cEEEEcCCCCCchh
Q 009212 307 SCILADQSGSGKTL 320 (540)
Q Consensus 307 dvlv~ApTGSGKTl 320 (540)
++++.+|||+|||.
T Consensus 5 ~~ll~GpsGvGKT~ 18 (171)
T PF07724_consen 5 NFLLAGPSGVGKTE 18 (171)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 68999999999996
No 346
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=87.91 E-value=0.45 Score=52.03 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=39.4
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.++++.|+||||||..|.+|.+-.. ..-+||.=|--||.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~--------------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY--------------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc--------------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 5899999999999999999976321 1148888899999888877776653
No 347
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=87.74 E-value=2.2 Score=50.92 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=62.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.+++|++|+++-+..+++.++++. .++++..++|+....+....+ . ...+|||||- ++ ...+++.
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----ii-e~GIDIp 729 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----II-ETGIDIP 729 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcccccc
Confidence 35689999999999999998888764 357899999998765543333 2 3589999996 33 3467888
Q ss_pred CccEEEEeCCccc
Q 009212 420 NLRCAILDEVDIL 432 (540)
Q Consensus 420 ~i~~LVlDEad~l 432 (540)
+++++|++.++++
T Consensus 730 ~v~~VIi~~a~~~ 742 (926)
T TIGR00580 730 NANTIIIERADKF 742 (926)
T ss_pred cCCEEEEecCCCC
Confidence 9999999999874
No 348
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.73 E-value=1.5 Score=46.09 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=29.4
Q ss_pred HHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
++..+++++++++||||||.. +-.++..+- ..-+++++=-+.||
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip------------~~~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIP------------AIERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCC------------CCCeEEEecCCCcc
Confidence 455788999999999999954 444444432 12356666666665
No 349
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=87.68 E-value=3.8 Score=40.38 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=32.9
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|.-+++.+++|+|||...+.-+...+. .+.+++|+.-- +-..++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~------------~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK------------QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh------------CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 3567888999999999754333333221 24467776654 44456666666653
No 350
>PRK10689 transcription-repair coupling factor; Provisional
Probab=87.64 E-value=2.3 Score=51.88 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=61.5
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.+++|++++++-+..+++.+.++. .++++.+++|+....+....+ . ...+|||||- ++ ...+++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Ii-erGIDIP~ 879 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPT 879 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hh-hccccccc
Confidence 4579999999999999988888774 356888999998776543333 2 4589999995 23 34778899
Q ss_pred ccEEEEeCCccc
Q 009212 421 LRCAILDEVDIL 432 (540)
Q Consensus 421 i~~LVlDEad~l 432 (540)
++++|++.+|++
T Consensus 880 v~~VIi~~ad~f 891 (1147)
T PRK10689 880 ANTIIIERADHF 891 (1147)
T ss_pred CCEEEEecCCCC
Confidence 999999999865
No 351
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.56 E-value=5.4 Score=42.92 Aligned_cols=47 Identities=28% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
+..-+++||||+|.|- . .-...+...++..+....+|+++ +-+..+.
T Consensus 125 ~~~~kvvIIdea~~l~-~-~~~~~LLk~LEep~~~t~~Il~t-~~~~kl~ 171 (397)
T PRK14955 125 KGRYRVYIIDEVHMLS-I-AAFNAFLKTLEEPPPHAIFIFAT-TELHKIP 171 (397)
T ss_pred cCCeEEEEEeChhhCC-H-HHHHHHHHHHhcCCCCeEEEEEe-CChHHhH
Confidence 4567899999999996 2 23334455555544444455444 4333333
No 352
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.55 E-value=4.6 Score=45.78 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=27.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC---CcEEEEcCCCCCchhhcHHH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYLLP 325 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G---~dvlv~ApTGSGKTlayllp 325 (540)
.+|.++=-.+.+.+.|.. .+..+ +.+|+.+|.|+|||.+..+-
T Consensus 13 ~~~~eiiGq~~~~~~L~~---------------~i~~~~i~~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRN---------------AIAEGRVAHAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred CCHHHhcCCHHHHHHHHH---------------HHHhCCCceEEEEECCCCCCHHHHHHHH
Confidence 467777656666655533 12222 34689999999999765433
No 353
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=87.48 E-value=1 Score=42.90 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=26.9
Q ss_pred HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
-.++++++.+++|+|||.... .+...+... +..+++ +...+|+.++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~-ai~~~~~~~-----------g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAV-AIANEAIRK-----------GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHH-HHHHHHHHT-----------T--EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHH-HHHHHhccC-----------CcceeE-eecCceeccc
Confidence 367899999999999998743 334444332 233555 4555665554
No 354
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.47 E-value=2.3 Score=45.43 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=50.9
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|.=+++.+++|+|||...+ -+...+.. .+.+++|+.-. +...|+......++-. ..-..+...
T Consensus 81 ~GslvLI~G~pG~GKStLll-q~a~~~a~-----------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~---~~~l~l~~e 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLL-QVAARLAK-----------RGGKVLYVSGE-ESPEQIKLRADRLGIS---TENLYLLAE 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHH-HHHHHHHh-----------cCCeEEEEECC-cCHHHHHHHHHHcCCC---cccEEEEcc
Confidence 35678889999999997533 33333322 13468887653 5556776666665421 111111111
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
...+.+...+.. ...++||||+++.+.
T Consensus 145 ------------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ------------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ------------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 112334444432 257899999998875
No 355
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.38 E-value=1.3 Score=45.32 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
.++++.+|+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999954
No 356
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.18 E-value=3.2 Score=44.89 Aligned_cols=17 Identities=41% Similarity=0.429 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.++++.+|+|+|||...
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 37999999999999653
No 357
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.01 E-value=2.4 Score=49.40 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=31.7
Q ss_pred cccccccCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 267 RKSFKELGCSDYMIESLKRQ-N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~-g--f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
..+|++++-....++.+.++ . +..|.-++... +..++.+++.+|+|+|||..
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 35788888777766666553 1 11111111111 23457899999999999964
No 358
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=1 Score=53.49 Aligned_cols=141 Identities=22% Similarity=0.254 Sum_probs=78.0
Q ss_pred cccccccCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFL-RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~-~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
...|.++|.-..+...|+++-+. -++|-+.+-+ .|.--+-++.++|.|+|||+..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a----------------------- 316 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA----------------------- 316 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH-----------------------
Confidence 35799999888888888886332 1222221111 1233467999999999999753
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCc---EEEeChHHHHHHHHhccccCCCcc
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVD---VLIATPGRFMFLIKEGILQLINLR 422 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~d---IlVaTP~rL~~ll~~~~~~l~~i~ 422 (540)
|+||......-++..- ..++|+| --|+.+++=+.++-... .-....
T Consensus 317 ---------raLa~~~s~~~~kisf---------------------fmrkgaD~lskwvgEaERqlrllFeeA-~k~qPS 365 (1080)
T KOG0732|consen 317 ---------RALAAACSRGNRKISF---------------------FMRKGADCLSKWVGEAERQLRLLFEEA-QKTQPS 365 (1080)
T ss_pred ---------Hhhhhhhcccccccch---------------------hhhcCchhhccccCcHHHHHHHHHHHH-hccCce
Confidence 1222222111111110 0112222 34777877666654321 112345
Q ss_pred EEEEeCCcccCC------CC---CHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 423 CAILDEVDILFN------DE---DFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 423 ~LVlDEad~ll~------d~---~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
.+.+||+|=+.- +. .....+..++.-++...|+++.+||.
T Consensus 366 IIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 366 IIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred EEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 678899994321 11 23344445555567788999999996
No 359
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=86.91 E-value=1 Score=50.95 Aligned_cols=44 Identities=30% Similarity=0.452 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333 (540)
Q Consensus 290 ~ptpiQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~~~ 333 (540)
+|+.||.+.... +-.|+=-|+.+|||+|||+..+..++..|...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 688899776654 45789888899999999999998888877543
No 360
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.80 E-value=0.8 Score=47.26 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=34.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHH
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQE 333 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~ 333 (540)
..+|++|++++-+.+.+.. ...=++|.+|||||||.. +..++.++.+.
T Consensus 105 i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 105 IPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred CCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 3589999999988763322 112478899999999965 56777777654
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=86.78 E-value=4.6 Score=40.81 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcc
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~P 353 (540)
.|.-+++.+++|+|||...+--+.+.+. .+.+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~------------~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS------------RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh------------CCCcEEEEEe
Confidence 4577899999999999754333333221 2446888773
No 362
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=86.77 E-value=1.5 Score=41.79 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCC-CCcEEEEecc
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPV-TAQYLFVTAT 461 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~-~~Q~ll~SAT 461 (540)
..-+++++||.+.-+ |......+..++..+.. ..++++.|--
T Consensus 115 ~~p~llilDEp~~~L-D~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAAL-DPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 566889999999998 66666666666555432 3666666553
No 363
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=86.76 E-value=13 Score=34.51 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=31.3
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
...+++|+|....+.-+......+..+........-++.++|..+.+..+.+...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 3566788998876531223344444444443445566777777666655555444
No 364
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.60 E-value=7.9 Score=43.76 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=84.2
Q ss_pred HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhc--CCCCceEEEE
Q 009212 303 VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK--CGVPFRSMVV 380 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~--~~~~l~v~~l 380 (540)
...+-.+..-|---|||+ |+.|++..++.. -.+.++.|++.-|.-++-+++++..-+. ++....+ ..
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s---------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi-~~ 268 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN---------IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTI-EN 268 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh---------hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCcccee-ee
Confidence 445777888899999996 689999888764 3477899999999988887777654332 1111111 11
Q ss_pred eCCcchHHHHHhhcCCCcEEEeChHHHH-----HHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCc
Q 009212 381 TGGFRQKTQLENLQEGVDVLIATPGRFM-----FLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQ 454 (540)
Q Consensus 381 ~Gg~~~~~q~~~l~~~~dIlVaTP~rL~-----~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q 454 (540)
++--|.+.-|+.=. ...+.+.+.-++..+|++||||.+- . ..+..|+-.+ .+++.
T Consensus 269 --------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~--~---~a~~tilgfm~q~~~K 329 (668)
T PHA03372 269 --------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK--K---DAFNTILGFLAQNTTK 329 (668)
T ss_pred --------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC--H---HHHHHhhhhhcccCce
Confidence 11235555554321 1122344556678899999999886 2 3445555544 35688
Q ss_pred EEEEeccCC
Q 009212 455 YLFVTATLP 463 (540)
Q Consensus 455 ~ll~SATlp 463 (540)
+|+.|.|-.
T Consensus 330 iIfISS~Ns 338 (668)
T PHA03372 330 IIFISSTNT 338 (668)
T ss_pred EEEEeCCCC
Confidence 899998853
No 365
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=86.54 E-value=1.9 Score=41.46 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=31.7
Q ss_pred ChHHHHHHHHhccccCCCccEEEEeCCcccC-C---CCCHHHHHHHHHHhCC-CCCcEEEEeccC
Q 009212 403 TPGRFMFLIKEGILQLINLRCAILDEVDILF-N---DEDFEVALQSLISSSP-VTAQYLFVTATL 462 (540)
Q Consensus 403 TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll-~---d~~f~~~i~~Il~~l~-~~~Q~ll~SATl 462 (540)
+...+...+...... -+|||||+|.+. . ...+...+..++.... .....++++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344555555543221 479999999998 2 2356667777776632 234455566655
No 366
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=86.49 E-value=9.6 Score=44.02 Aligned_cols=183 Identities=18% Similarity=0.199 Sum_probs=93.2
Q ss_pred cCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 273 LGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 273 l~L~~~ll~~L~~~---gf~~ptpiQ~~aip~il--~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
+-|.+.|.+.|+-. |+.-++.-=.+++.... +|--+|+.-..|-|||+-..-.+=-+++.. ....
T Consensus 245 iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT----------~AKt 314 (1387)
T KOG1016|consen 245 IFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHT----------KAKT 314 (1387)
T ss_pred eeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcC----------ccce
Confidence 33556666555432 22233333333333332 456788888999999987443332233322 2345
Q ss_pred EEEEccCHHHHHHHHHHHHhh----hc-CC---CCceEEEEeCCcchHHHHHhh----cCCCcEEEeChHHHHHHHHh--
Q 009212 348 VVILAPTAELASQVLSNCRSL----SK-CG---VPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKE-- 413 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l----~~-~~---~~l~v~~l~Gg~~~~~q~~~l----~~~~dIlVaTP~rL~~ll~~-- 413 (540)
+|+|+|-..|-+= +.++... .. .+ ..+.+.++..+...-.+...+ -..-.|++.-.+.+.-++..
T Consensus 315 VL~ivPiNTlQNW-lsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~ 393 (1387)
T KOG1016|consen 315 VLVIVPINTLQNW-LSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTL 393 (1387)
T ss_pred EEEEEehHHHHHH-HHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcc
Confidence 9999998887432 2222221 11 11 125566766665433322222 12223444445544332211
Q ss_pred ---------------cccc-------------------CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 414 ---------------GILQ-------------------LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 414 ---------------~~~~-------------------l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
..+. -..-+++|+||-|++- .....+...++.+...+++++..
T Consensus 394 ~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIK---N~~A~iS~aLk~IrtrRRiVLTG 470 (1387)
T KOG1016|consen 394 PKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIK---NITAEISMALKAIRTRRRIVLTG 470 (1387)
T ss_pred cccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceec---cchHHHHHHHHHhhhceeEEEec
Confidence 0000 1124689999999996 23334444455555567777777
Q ss_pred ccCCHHHHHH
Q 009212 460 ATLPVEIYNK 469 (540)
Q Consensus 460 ATlp~~i~~~ 469 (540)
.-+-..+.+.
T Consensus 471 YPLQNNLlEY 480 (1387)
T KOG1016|consen 471 YPLQNNLLEY 480 (1387)
T ss_pred cccccchHHH
Confidence 7676655443
No 367
>PRK04328 hypothetical protein; Provisional
Probab=86.49 E-value=6.1 Score=39.60 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=35.2
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|.-+++.+++|+|||...+-.+.+.+.. +-.++|+. +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~------------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM------------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc------------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 45788999999999986544334333322 34577776 6666677777777664
No 368
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.47 E-value=4.1 Score=46.45 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
+..-+++||||+|.|- . .-...+...++..+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt-~-~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLS-T-AAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcC-H-HHHHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999996 2 33345555555555455555554
No 369
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=86.41 E-value=2.8 Score=48.20 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=62.8
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~ 386 (540)
-.|+.---|-|||..-+.-++.+-.... . ........-.||+||+ .+..|....+.+.... ..+.+.+.+| ..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~--~-~~~~~~~kttLivcp~-s~~~qW~~elek~~~~-~~l~v~v~~g--r~ 226 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSK--E-EDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEE-DKLSIYVYHG--RT 226 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCc--c-hhhccccCceeEecch-HHHHHHHHHHhccCCc-cceEEEEecc--cc
Confidence 3555667799999874433332111100 0 0001123447888886 5566777777555442 3466666666 11
Q ss_pred HHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCc--cEEEEeCCcccC
Q 009212 387 KTQLENLQEGVDVLIATPGRFMFLIKEGILQLINL--RCAILDEVDILF 433 (540)
Q Consensus 387 ~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i--~~LVlDEad~ll 433 (540)
+ .... ....+|+|+|++.+.. ..+..+ -.+|+||||.+-
T Consensus 227 k-d~~e-l~~~dVVltTy~il~~------~~l~~i~w~Riildea~~ik 267 (674)
T KOG1001|consen 227 K-DKSE-LNSYDVVLTTYDILKN------SPLVKIKWLRIVLDEAHTIK 267 (674)
T ss_pred c-ccch-hcCCceEEeeHHHhhc------ccccceeEEEEEeccccccC
Confidence 1 1112 2457899999998754 222223 358999999987
No 370
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=86.29 E-value=5.4 Score=42.48 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=63.5
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~ 384 (540)
.+.+.+.++.|.|||+. +-++...... ..+.+ ++.-+...++++.+.++.. +.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~---------~~k~R----~HFh~Fm~~vh~~l~~~~~------------~~ 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPI---------KRKRR----VHFHEFMLDVHSRLHQLRG------------QD 114 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCc---------ccccc----ccccHHHHHHHHHHHHHhC------------CC
Confidence 57899999999999973 2222211110 01111 2455777777777776641 00
Q ss_pred chHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCC
Q 009212 385 RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLP 463 (540)
Q Consensus 385 ~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp 463 (540)
. - -..+.+.+ .....+|+|||+|.- |-+-...+.++++.+ ....-+|+.|-+.|
T Consensus 115 ~-------------~----l~~va~~l------~~~~~lLcfDEF~V~--DiaDAmil~rLf~~l~~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 115 D-------------P----LPQVADEL------AKESRLLCFDEFQVT--DIADAMILKRLFEALFKRGVVLVATSNRPP 169 (362)
T ss_pred c-------------c----HHHHHHHH------HhcCCEEEEeeeecc--chhHHHHHHHHHHHHHHCCCEEEecCCCCh
Confidence 0 0 00111111 235668999999864 556666777777765 34566666677777
Q ss_pred HHHH
Q 009212 464 VEIY 467 (540)
Q Consensus 464 ~~i~ 467 (540)
.++.
T Consensus 170 ~~Ly 173 (362)
T PF03969_consen 170 EDLY 173 (362)
T ss_pred HHHc
Confidence 6653
No 371
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.13 E-value=2.8 Score=49.17 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+..+++.+|+|+|||..
T Consensus 346 ~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSL 363 (775)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 346799999999999964
No 372
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=86.10 E-value=2.4 Score=39.33 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQ 332 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~ 332 (540)
++.+++.|+.|+|||.. +-.++..+..
T Consensus 24 ~~~~ll~G~~G~GKT~l-l~~~~~~~~~ 50 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSL-LRALLDRLAE 50 (185)
T ss_dssp ---EEE-B-TTSSHHHH-HHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 47899999999999964 3345555544
No 373
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.03 E-value=3.7 Score=46.10 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=58.6
Q ss_pred ccCCCHHHH-HHHHHCCCCCCc----HHHHHHHHHHH--cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCC
Q 009212 272 ELGCSDYMI-ESLKRQNFLRPS----QIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (540)
Q Consensus 272 ~l~L~~~ll-~~L~~~gf~~pt----piQ~~aip~il--~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~ 344 (540)
+.++.++++ ..|.+.--.++. .||.+-=.+|. .++=++|++..|||||.+++=-+...+.... ....
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R------~~l~ 259 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYR------GPLQ 259 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccc------cccc
Confidence 456777765 456665333442 34544433444 3456888999999999875432222222211 1112
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKC 371 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~ 371 (540)
...+||+.|++-+..-+.+++-+|+..
T Consensus 260 ~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 260 AKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred cCceEEEcCcHHHHHHHHHhchhhccC
Confidence 223999999999999999999999863
No 374
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=85.97 E-value=11 Score=41.26 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=14.3
Q ss_pred cEEEEcCCCCCchhhcHH
Q 009212 307 SCILADQSGSGKTLAYLL 324 (540)
Q Consensus 307 dvlv~ApTGSGKTlayll 324 (540)
-+++++++|+|||....-
T Consensus 101 vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 477899999999976443
No 375
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.88 E-value=3.1 Score=43.44 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc------------cCHHHHHHHHHHHHhhhcCC
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA------------PTAELASQVLSNCRSLSKCG 372 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~------------PtreLa~Qi~~~l~~l~~~~ 372 (540)
+|=+++.+|+|+|||- .+-++.|++.-. ......++.+|- -+--|+.++++.+.+|...
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR-------~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d- 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIR-------TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED- 247 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheee-------ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC-
Confidence 4668889999999994 466666666422 122334444332 2235788888888888774
Q ss_pred CCceEEEEeCCc------------------------chHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 373 VPFRSMVVTGGF------------------------RQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 373 ~~l~v~~l~Gg~------------------------~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
.+.-++++.... ..-.|+.++++.++++|-|...|.+-+ +.-.+|-
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~si----------D~AfVDR 317 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSI----------DVAFVDR 317 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHH----------HHHhhhH
Confidence 444555555432 122455566666677766655554433 3445566
Q ss_pred Cccc
Q 009212 429 VDIL 432 (540)
Q Consensus 429 ad~l 432 (540)
||-.
T Consensus 318 ADi~ 321 (423)
T KOG0744|consen 318 ADIV 321 (423)
T ss_pred hhhe
Confidence 7654
No 376
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=85.57 E-value=0.7 Score=52.43 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
+++++.||||||||..|.+|-+-... .-+||+=|--|+...+....+++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~--------------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE--------------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC--------------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 58999999999999999999876531 13777777777777777666654
No 377
>PRK06904 replicative DNA helicase; Validated
Probab=85.47 E-value=7.7 Score=42.86 Aligned_cols=143 Identities=13% Similarity=0.166 Sum_probs=67.0
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeC-
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG- 382 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~G- 382 (540)
.|.=+++.|.+|.|||. |.+-+...+... .+..++|++ .-.-..|+...+-.... +....- +..|
T Consensus 220 ~G~LiiIaarPg~GKTa-falnia~~~a~~----------~g~~Vl~fS-lEMs~~ql~~Rlla~~s-~v~~~~-i~~g~ 285 (472)
T PRK06904 220 PSDLIIVAARPSMGKTT-FAMNLCENAAMA----------SEKPVLVFS-LEMPAEQIMMRMLASLS-RVDQTK-IRTGQ 285 (472)
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHh----------cCCeEEEEe-ccCCHHHHHHHHHHhhC-CCCHHH-hccCC
Confidence 34456668899999996 445554444321 123455554 33445555544433211 111111 1122
Q ss_pred CcchHHH------HHhhcCCCcEEE-----eChHHHHHHHHhccccCCCccEEEEeCCcccCCC---CCHHHHHHHHHHh
Q 009212 383 GFRQKTQ------LENLQEGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISS 448 (540)
Q Consensus 383 g~~~~~q------~~~l~~~~dIlV-----aTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d---~~f~~~i~~Il~~ 448 (540)
.....+. ...+.+..++.| .|+..+...+++-...-..++++|||-.+.|-.. ......+..|.+.
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~ 365 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRS 365 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHH
Confidence 1222211 122222344665 2555555444321111235889999999887521 1223344444333
Q ss_pred C---C--CCCcEEEEec
Q 009212 449 S---P--VTAQYLFVTA 460 (540)
Q Consensus 449 l---~--~~~Q~ll~SA 460 (540)
+ . .++.++++|.
T Consensus 366 LK~lAkel~ipVi~lsQ 382 (472)
T PRK06904 366 LKALAKELKVPVVALSQ 382 (472)
T ss_pred HHHHHHHhCCeEEEEEe
Confidence 3 2 2566777763
No 378
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=85.44 E-value=26 Score=37.11 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC---CCCcEEEEeccCC--HHHHHHHHHhCCCceE
Q 009212 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP---VTAQYLFVTATLP--VEIYNKLVEVFPDCKV 479 (540)
Q Consensus 405 ~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~---~~~Q~ll~SATlp--~~i~~~l~~~l~~~~~ 479 (540)
..|+..+..+.-..+.--++|+||+|... .+.....+-.++.... ..+-++++|..+. +-++.-+...|.+.++
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~-~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I 200 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFA-PHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVI 200 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccc-cchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhccccee
Confidence 34556666544333333468999999887 5666666666665543 2344556655553 3333333344444444
Q ss_pred Ee
Q 009212 480 VM 481 (540)
Q Consensus 480 i~ 481 (540)
.+
T Consensus 201 ~m 202 (408)
T KOG2228|consen 201 FM 202 (408)
T ss_pred ec
Confidence 33
No 379
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=85.44 E-value=1.2 Score=51.04 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHcCC----------cEEEE--cCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 290 RPSQIQAMAFPPVVEGK----------SCILA--DQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~----------dvlv~--ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
.++.+|.+++-.+...+ -++|- |.-|-|+|.|-. |+...++ .+.++|.+.=+..|
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk-----------GRKrAlW~SVSsDL 330 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK-----------GRKRALWFSVSSDL 330 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc-----------ccceeEEEEecccc
Confidence 56667888776544322 23443 344566676643 3333332 35679999999999
Q ss_pred HHHHHHHHHhhhcCCCCceEEEEeC----CcchHHHHHhhcCCCcEEEeChHHHHH---------------HHHhccccC
Q 009212 358 ASQVLSNCRSLSKCGVPFRSMVVTG----GFRQKTQLENLQEGVDVLIATPGRFMF---------------LIKEGILQL 418 (540)
Q Consensus 358 a~Qi~~~l~~l~~~~~~l~v~~l~G----g~~~~~q~~~l~~~~dIlVaTP~rL~~---------------ll~~~~~~l 418 (540)
-....+.++.++. .++.+..+.- ...-++ -.... -.||++|.-.|.- +++--.-.+
T Consensus 331 KfDAERDL~DigA--~~I~V~alnK~KYakIss~e-n~n~k--rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f 405 (1300)
T KOG1513|consen 331 KFDAERDLRDIGA--TGIAVHALNKFKYAKISSKE-NTNTK--RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF 405 (1300)
T ss_pred ccchhhchhhcCC--CCccceehhhcccccccccc-cCCcc--ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc
Confidence 8888888888875 3455544321 111110 00111 2589999866541 221111111
Q ss_pred CCccEEEEeCCcccCC--------CCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 419 INLRCAILDEVDILFN--------DEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~--------d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
=.++||||||.--+ ..-....+..+.+.+| ..+++..|||=
T Consensus 406 --eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 406 --EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred --ceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 13699999998642 1125566777777787 68889999985
No 380
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=85.39 E-value=6.5 Score=42.53 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQR 329 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~ 329 (540)
.|.=+++.|++|+|||.. ++-+...
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~ 217 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAEN 217 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHH
Confidence 456678889999999964 4444433
No 381
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.36 E-value=6.6 Score=43.75 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=26.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC---CcEEEEcCCCCCchhhcH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYL 323 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G---~dvlv~ApTGSGKTlayl 323 (540)
.+|+++--.+.+.+.|... +..+ +-+++++|.|+|||.+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~---------------i~~~~l~ha~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAA---------------LRQGRLGHAYLFSGPRGVGKTTTAR 54 (504)
T ss_pred CCHHHhcChHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHHH
Confidence 4677775566665555331 1122 235999999999998754
No 382
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=85.33 E-value=12 Score=35.25 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=37.2
Q ss_pred cCCCccEEEEeCCcccCCCCC--HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHH
Q 009212 417 QLINLRCAILDEVDILFNDED--FEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (540)
Q Consensus 417 ~l~~i~~LVlDEad~ll~d~~--f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~ 469 (540)
....+++|||||+-..+ +.+ -...+..+++.-|...-+|+.+-..|+++.+.
T Consensus 92 ~~~~~dLlVLDEi~~a~-~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 92 ASGEYDLVILDEINYAL-GYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred hcCCCCEEEEechHhHh-hCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 34578999999998876 344 34566677777776666777777788887653
No 383
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.33 E-value=9.2 Score=40.40 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=27.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC---CcEEEEcCCCCCchhhc
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAY 322 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G---~dvlv~ApTGSGKTlay 322 (540)
.+|+++-.++.+.+.|... +..| +.+++.+|.|+|||...
T Consensus 14 ~~~~~iig~~~~~~~l~~~---------------i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNA---------------IENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred CcHHhcCCcHHHHHHHHHH---------------HHcCCCCeEEEEECCCCCCHHHHH
Confidence 4688887777766555331 2223 47889999999999653
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.29 E-value=5.2 Score=44.24 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=37.9
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|.-+++.+++|+|||...+-.+...+. .+-+++|++ +-|-..|+...++.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~------------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA------------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 4568999999999999754333332221 245688876 7888899999988875
No 385
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=85.20 E-value=5.4 Score=43.29 Aligned_cols=141 Identities=15% Similarity=0.118 Sum_probs=65.3
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|.=+++.|++|+|||.. ++-++.++... .+..++|++ .-.-..|+...+..... +..+.- ...|.
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~~a~~----------~g~~vl~~S-lEm~~~~i~~R~~~~~~-~v~~~~-~~~g~ 259 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAENAAIK----------EGKPVAFFS-LEMSAEQLAMRMLSSES-RVDSQK-LRTGK 259 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHHHHHh----------CCCeEEEEe-CcCCHHHHHHHHHHHhc-CCCHHH-hccCC
Confidence 355678889999999954 44444443221 123455554 33344455544433321 111111 01222
Q ss_pred cchHHH------HHhhcCCCcEEE-e----ChHHHHHHHHhccccCCCccEEEEeCCcccCCCC---CHHHHHHHHHHhC
Q 009212 384 FRQKTQ------LENLQEGVDVLI-A----TPGRFMFLIKEGILQLINLRCAILDEVDILFNDE---DFEVALQSLISSS 449 (540)
Q Consensus 384 ~~~~~q------~~~l~~~~dIlV-a----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~---~f~~~i~~Il~~l 449 (540)
....+. ...+.+ ..+.| . |+..+...++.-.. -..+++||||=.+.|.... .....+..|.+.+
T Consensus 260 l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~L 337 (434)
T TIGR00665 260 LSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSL 337 (434)
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHH
Confidence 222111 122222 33444 2 44455544432111 1247899999998875211 2333344443333
Q ss_pred C-----CCCcEEEEec
Q 009212 450 P-----VTAQYLFVTA 460 (540)
Q Consensus 450 ~-----~~~Q~ll~SA 460 (540)
. .++-++++|.
T Consensus 338 k~lA~e~~i~vi~lsq 353 (434)
T TIGR00665 338 KALAKELNVPVIALSQ 353 (434)
T ss_pred HHHHHHhCCeEEEEec
Confidence 2 2456666664
No 386
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.04 E-value=6.1 Score=45.20 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayl 323 (540)
.+|+++-.++..++.|... ++...++ ...++=+++.+|+|+|||.++-
T Consensus 81 ~~ldel~~~~~ki~~l~~~-------l~~~~~~-~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-------LKAQVLE-NAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-------HHhcccc-cCCCcEEEEECCCCCCHHHHHH
Confidence 5688888888877765432 0000000 1123348899999999998643
No 387
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.92 E-value=13 Score=35.40 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=36.1
Q ss_pred CCCccEEEEeCCcccCCCCC--HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDED--FEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~--f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~ 469 (540)
-..+++||+||+-..+ +.+ -...+..+++.-|...-+|+..-..|+++.+.
T Consensus 95 ~~~~DlvVLDEi~~A~-~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 95 DPELDLVLLDELTYAL-KYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred cCCCCEEEehhhHHHH-HCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 3578999999998776 444 23456677777776667777777778877653
No 388
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=84.90 E-value=2.1 Score=49.63 Aligned_cols=39 Identities=18% Similarity=0.087 Sum_probs=23.8
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~ 464 (540)
.-.+|||||+|.+. ......+.. .+. ..++++++||-+.
T Consensus 109 ~~~IL~IDEIh~Ln--~~qQdaLL~---~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFN--KAQQDALLP---WVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCC--HHHHHHHHH---Hhc-CceEEEEEecCCC
Confidence 34579999999986 222233333 332 4567888877543
No 389
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.88 E-value=3.8 Score=45.25 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=26.3
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC---CcEEEEcCCCCCchhhcH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG---KSCILADQSGSGKTLAYL 323 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G---~dvlv~ApTGSGKTlayl 323 (540)
.+|+++--.+.+.+.|.. .+..+ ..+|+.+|.|+|||....
T Consensus 11 ~~~~divGq~~i~~~L~~---------------~i~~~~l~~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIIN---------------ALKKNSISHAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred CCHHHccCcHHHHHHHHH---------------HHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 467777656666554432 12233 247999999999997644
No 390
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=84.87 E-value=5.6 Score=44.30 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCcHHHHHHHHHHHc------C----CcEEEEcCCCCCchhhcH-HHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHH
Q 009212 290 RPSQIQAMAFPPVVE------G----KSCILADQSGSGKTLAYL-LPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (540)
Q Consensus 290 ~ptpiQ~~aip~il~------G----~dvlv~ApTGSGKTlayl-lpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa 358 (540)
.+-|+|..++-.++. | +..+|..|-+-|||.... +.....+... ..+-...|++|+.+-+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~---------~~~~~~~i~A~s~~qa 131 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW---------RSGAGIYILAPSVEQA 131 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh---------hcCCcEEEEeccHHHH
Confidence 578999999988872 2 367888899999996543 2222223222 3456799999999999
Q ss_pred HHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh--ccccCCCccEEEEeCCcccCCCC
Q 009212 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFNDE 436 (540)
Q Consensus 359 ~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~--~~~~l~~i~~LVlDEad~ll~d~ 436 (540)
.+.++.++........++..+-+ -.+...|.+.--...+..+.. +...-.+..+.|+||.|... +.
T Consensus 132 ~~~F~~ar~mv~~~~~l~~~~~~-----------q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~-~~ 199 (546)
T COG4626 132 ANSFNPARDMVKRDDDLRDLCNV-----------QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFG-KQ 199 (546)
T ss_pred HHhhHHHHHHHHhCcchhhhhcc-----------ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhc-CH
Confidence 99999998876532211110000 001111222211222222222 22333456789999999886 32
Q ss_pred CHHHHHHHHHHhCC--CCCcEEEEec
Q 009212 437 DFEVALQSLISSSP--VTAQYLFVTA 460 (540)
Q Consensus 437 ~f~~~i~~Il~~l~--~~~Q~ll~SA 460 (540)
...+..+..-+. ++.+++..|.
T Consensus 200 --~~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 200 --EDMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred --HHHHHHHHhhhccCcCceEEEEec
Confidence 255555555443 3556666554
No 391
>PRK05748 replicative DNA helicase; Provisional
Probab=84.76 E-value=5.7 Score=43.43 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=66.6
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH-hhhcCCCCceEEEEeC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR-SLSKCGVPFRSMVVTG 382 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~-~l~~~~~~l~v~~l~G 382 (540)
.|.-+++.|++|.|||.. .+-++..+... .+..++|+ ..-.-..|+...+. ..+. ..... +..|
T Consensus 202 ~G~livIaarpg~GKT~~-al~ia~~~a~~----------~g~~v~~f-SlEms~~~l~~R~l~~~~~--v~~~~-i~~~ 266 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAF-ALNIAQNVATK----------TDKNVAIF-SLEMGAESLVMRMLCAEGN--IDAQR-LRTG 266 (448)
T ss_pred CCceEEEEeCCCCCchHH-HHHHHHHHHHh----------CCCeEEEE-eCCCCHHHHHHHHHHHhcC--CCHHH-hhcC
Confidence 345678889999999954 44444443211 12335554 44444555555543 2221 11110 1112
Q ss_pred CcchHHHHH-------hhcCCCcEEEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccCCC----CCHHHHHHHHH
Q 009212 383 GFRQKTQLE-------NLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND----EDFEVALQSLI 446 (540)
Q Consensus 383 g~~~~~q~~-------~l~~~~dIlVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d----~~f~~~i~~Il 446 (540)
.... .++. .+.+ ..+.|. |+..+...+++-......++++|||=.+.|-.. ......+..|.
T Consensus 267 ~l~~-~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~ 344 (448)
T PRK05748 267 QLTD-DDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEIS 344 (448)
T ss_pred CCCH-HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHH
Confidence 2222 2222 2222 345553 344554443321111126889999999988411 12233344443
Q ss_pred HhCC-----CCCcEEEEeccCCH
Q 009212 447 SSSP-----VTAQYLFVTATLPV 464 (540)
Q Consensus 447 ~~l~-----~~~Q~ll~SATlp~ 464 (540)
+.+. .++.++++|. ++.
T Consensus 345 ~~LK~lAke~~i~vi~lsQ-lnr 366 (448)
T PRK05748 345 RSLKALAKELKVPVIALSQ-LSR 366 (448)
T ss_pred HHHHHHHHHhCCeEEEecc-cCh
Confidence 3331 2456666655 443
No 392
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=84.61 E-value=5.4 Score=41.60 Aligned_cols=43 Identities=26% Similarity=0.204 Sum_probs=27.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhc
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlay 322 (540)
.+|.++--.+.+++.|... +.... ...++++.+|+|+|||...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~------------l~~~~~~~~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIF------------IEAAKKRGEALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CCHHHhcCcHHHHHHHHHH------------HHHHHhcCCCCCcEEEECCCCccHHHHH
Confidence 4677776677766655331 11111 1358999999999999653
No 393
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=84.60 E-value=4.3 Score=39.67 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=33.4
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|.-+++.+++|+|||...+--+...+. .+-.++|+.- .+-..++.+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~------------~g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLK------------NGEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh------------CCCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 3567888999999998643322332222 1345777654 456777777777664
No 394
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.59 E-value=11 Score=36.55 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=35.7
Q ss_pred CCCccEEEEeCCcccCCCCCH--HHHHHHHHHhCCCCCcEEEEeccCCHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDF--EVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f--~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~ 469 (540)
-..+++|||||+-..+ +.++ ...+..+++.-|...-+|+..-..|+++.+.
T Consensus 113 ~~~ydlvVLDEi~~Al-~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 113 DESYDLVVLDELTYAL-KYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred CCCCCEEEEehhhHHH-HCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 3568899999998887 5553 4566667777666666666666678877543
No 395
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=84.13 E-value=35 Score=37.27 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.8
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
-+++++++|+|||...
T Consensus 102 vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTC 117 (429)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999998653
No 396
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=83.93 E-value=26 Score=40.42 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=74.5
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH---hhc-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~---~l~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.++|+..+..+.+.+... ++.+..++|+....+... .+. ...+|+||| +++. ..+.+.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeC
Confidence 4678999999999999999888765 357777888766543322 222 357899998 2333 467788
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHHHHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVE 472 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~ 472 (540)
.++++|+=+++...-.......++.+=+.. ......+++--.....+...+..
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 999999888877531123333444432211 12345666655666555554443
No 397
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=83.75 E-value=3.2 Score=44.75 Aligned_cols=20 Identities=20% Similarity=0.425 Sum_probs=17.2
Q ss_pred HHcCCcEEEEcCCCCCchhh
Q 009212 302 VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTla 321 (540)
+-.|+-+++.+|+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 34788999999999999964
No 398
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=83.70 E-value=3.1 Score=41.37 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=13.1
Q ss_pred cEEEEcCCCCCchh
Q 009212 307 SCILADQSGSGKTL 320 (540)
Q Consensus 307 dvlv~ApTGSGKTl 320 (540)
++|+.+|.|.|||.
T Consensus 52 h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 52 HMLFYGPPGLGKTT 65 (233)
T ss_dssp EEEEESSTTSSHHH
T ss_pred eEEEECCCccchhH
Confidence 79999999999995
No 399
>PRK13764 ATPase; Provisional
Probab=83.61 E-value=2 Score=48.65 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=30.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
.+++++++++.+++.+. ...++++++++||||||.. +-.++..+.
T Consensus 238 ~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 238 LSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred CCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 46777787765543321 3467899999999999964 455555553
No 400
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.61 E-value=3.5 Score=47.97 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=35.8
Q ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
=|||+|+-|.+- +.-.-..++.++++.|...+.++.|=+-|
T Consensus 131 l~LVlDDyHli~-~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLIS-DPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccC-cccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 489999999998 77788899999999999888888887655
No 401
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=83.60 E-value=5.9 Score=38.07 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
.|.=+.+.+++|+|||...+-.+.+.. . .+.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~-~-----------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA-R-----------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-h-----------CCCeEEEEECC
Confidence 356688999999999976543333322 1 13467777764
No 402
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.48 E-value=12 Score=41.08 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=25.2
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
..-+++||||+|.|. ..-...+.++++..+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt--~~~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLT--KEAFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhC--HHHHHHHHHHhhcCCCCceEEEEe
Confidence 456789999999986 233445566666655555555544
No 403
>PRK07004 replicative DNA helicase; Provisional
Probab=83.45 E-value=5.7 Score=43.71 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=64.4
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh-hhcCCCCceEEEE-e
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-LSKCGVPFRSMVV-T 381 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~-l~~~~~~l~v~~l-~ 381 (540)
.|.=+++.|.+|+|||.. .+-+..++... .+..+++.+ .-.-..|+...+-. .+. +....+ .
T Consensus 212 ~g~liviaarpg~GKT~~-al~ia~~~a~~----------~~~~v~~fS-lEM~~~ql~~R~la~~~~----v~~~~i~~ 275 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAF-SMNIGEYVAVE----------YGLPVAVFS-MEMPGTQLAMRMLGSVGR----LDQHRMRT 275 (460)
T ss_pred CCceEEEEeCCCCCccHH-HHHHHHHHHHH----------cCCeEEEEe-CCCCHHHHHHHHHHhhcC----CCHHHHhc
Confidence 455677789999999965 44444333211 122355443 33333444443322 211 111111 1
Q ss_pred CCcchHHH------HHhhcCCCcEEEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccCCC---CCHHHHHHHHHH
Q 009212 382 GGFRQKTQ------LENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLIS 447 (540)
Q Consensus 382 Gg~~~~~q------~~~l~~~~dIlVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d---~~f~~~i~~Il~ 447 (540)
|.....+. ...+. ...+.|. |+..+...+++-......+++||||=.+.|... ......+..|.+
T Consensus 276 g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr 354 (460)
T PRK07004 276 GRLTDEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISR 354 (460)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHH
Confidence 22222211 12222 2456552 444444433321111235789999999888521 123334455544
Q ss_pred hCC-----CCCcEEEEec
Q 009212 448 SSP-----VTAQYLFVTA 460 (540)
Q Consensus 448 ~l~-----~~~Q~ll~SA 460 (540)
.+. .++.++++|.
T Consensus 355 ~LK~lAkel~ipVi~lsQ 372 (460)
T PRK07004 355 SLKSLAKELDVPVIALSQ 372 (460)
T ss_pred HHHHHHHHhCCeEEEEec
Confidence 332 2566666664
No 404
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=83.41 E-value=6.5 Score=38.23 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~ 385 (540)
.=.++++|..||||.- +++++...+ ..+.++++..|-.. ..+....+.+..-
T Consensus 5 ~l~~i~gpM~SGKT~e----Ll~r~~~~~--------~~g~~v~vfkp~iD----------------~R~~~~~V~Sr~G 56 (201)
T COG1435 5 WLEFIYGPMFSGKTEE----LLRRARRYK--------EAGMKVLVFKPAID----------------TRYGVGKVSSRIG 56 (201)
T ss_pred EEEEEEccCcCcchHH----HHHHHHHHH--------HcCCeEEEEecccc----------------cccccceeeeccC
Confidence 3357889999999974 333333222 13556777776432 1111112221111
Q ss_pred hHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC
Q 009212 386 QKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (540)
Q Consensus 386 ~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~ 450 (540)
.. -.-++|-.+..+.+.+......+. +++|.||||+.+- ......+..|...+.
T Consensus 57 ~~--------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~--~~~v~~l~~lad~lg 110 (201)
T COG1435 57 LS--------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFD--EELVYVLNELADRLG 110 (201)
T ss_pred Cc--------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCC--HHHHHHHHHHHhhcC
Confidence 11 123566677777777665333222 8899999998764 456666666666543
No 405
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=83.29 E-value=26 Score=36.47 Aligned_cols=51 Identities=22% Similarity=0.286 Sum_probs=26.5
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
...-+++||||+|.|. . .-...+...++..+....+|+. ++-+..+...+.
T Consensus 115 ~~~~~vviidea~~l~-~-~~~~~Ll~~le~~~~~~~lIl~-~~~~~~l~~~l~ 165 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLS-K-SAFNALLKTLEEPPEHVVFILA-TTEPHKIPATIL 165 (355)
T ss_pred cCCceEEEEeChhhcC-H-HHHHHHHHHHhCCccceeEEEE-eCCHHHHHHHHH
Confidence 3456789999999886 2 2233344444444444444443 333333333333
No 406
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=83.10 E-value=1.5 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.+.-+++++|||||||.. +-.++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 567899999999999965 33444444
No 407
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.05 E-value=8.1 Score=43.73 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=55.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.|+|++.|.++++.+... ++.+..++|+....+....+ . ...+|||||- ++. ..+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~a-rGIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAA-RGLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhh-cCCCcc
Confidence 3567999999999999999888754 46889999998766554333 2 3579999994 343 466788
Q ss_pred CccEEEEeCC
Q 009212 420 NLRCAILDEV 429 (540)
Q Consensus 420 ~i~~LVlDEa 429 (540)
.++++|.-++
T Consensus 325 ~V~~VInyd~ 334 (572)
T PRK04537 325 GVKYVYNYDL 334 (572)
T ss_pred CCCEEEEcCC
Confidence 9998876443
No 408
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=82.98 E-value=1.3 Score=42.66 Aligned_cols=54 Identities=11% Similarity=0.264 Sum_probs=25.5
Q ss_pred CccEEEEeCCcccCCCCCHH----HHHHHHHHhCCC-CCcEEEEeccCCHHHHHHHHHhC
Q 009212 420 NLRCAILDEVDILFNDEDFE----VALQSLISSSPV-TAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~----~~i~~Il~~l~~-~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
.-.++||||||.++...... +.+...+..... ..-++++|.. +..+-..++...
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~-~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS-PSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES--GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC-HHHHhHHHHHHH
Confidence 44589999999998533331 222244444443 3445555544 444545555433
No 409
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=82.95 E-value=0.99 Score=51.82 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=37.6
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
++++++||||||||..|++|-+-... ..+||+=|--|+........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~--------------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK--------------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC--------------CCEEEEeCCchHHHHHHHHHHhC
Confidence 58999999999999999999865421 13778888888877766666554
No 410
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.89 E-value=5.5 Score=44.65 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=32.0
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
....+++||||||.|- ..-...+.+.++..|....+|+++ |-+..+.
T Consensus 115 ~~~~KVvIIDEad~Lt--~~A~NALLK~LEEpp~~t~FIL~t-td~~kL~ 161 (535)
T PRK08451 115 MARFKIFIIDEVHMLT--KEAFNALLKTLEEPPSYVKFILAT-TDPLKLP 161 (535)
T ss_pred cCCeEEEEEECcccCC--HHHHHHHHHHHhhcCCceEEEEEE-CChhhCc
Confidence 3567899999999996 344556677777767677777765 4344443
No 411
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=82.89 E-value=1.7 Score=41.42 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=24.9
Q ss_pred CCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhh
Q 009212 290 RPSQIQAMAFPP-VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 290 ~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTla 321 (540)
.+++-|...+.. +..|..++++++||||||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 356667766665 45688999999999999965
No 412
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=82.57 E-value=6.2 Score=43.34 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=51.7
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|.-+++.+++|+|||...+. ++..+.. .+.+++|+.. .|-..|+......++- ......+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~-----------~g~kvlYvs~-EEs~~qi~~ra~rlg~---~~~~l~~~~e 156 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAK-----------NQMKVLYVSG-EESLQQIKMRAIRLGL---PEPNLYVLSE 156 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHh-----------cCCcEEEEEC-cCCHHHHHHHHHHcCC---ChHHeEEcCC
Confidence 356788899999999975443 3333322 1335888875 4566777766665532 1111111110
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
.+.+.+...+.. ...++||||.+..+.
T Consensus 157 ------------------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 ------------------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred ------------------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 123445444433 246789999998765
No 413
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=82.47 E-value=12 Score=39.20 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=32.5
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l 470 (540)
...-+++||||+|.|- ..-...+.+.++.-|....+|+.+. -+..+...+
T Consensus 108 ~~~~kvviI~~a~~~~--~~a~NaLLK~LEEPp~~~~~Il~t~-~~~~ll~TI 157 (329)
T PRK08058 108 ESNKKVYIIEHADKMT--ASAANSLLKFLEEPSGGTTAILLTE-NKHQILPTI 157 (329)
T ss_pred ccCceEEEeehHhhhC--HHHHHHHHHHhcCCCCCceEEEEeC-ChHhCcHHH
Confidence 3567899999999996 3456667777777666666666443 333333333
No 414
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=82.38 E-value=8.2 Score=43.60 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=28.6
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
....+++||||+|.|. ......+.+.++..+...- ++|.+|-+..+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls--~~a~naLLK~LEepp~~~v-fI~~tte~~kL~~tI~ 167 (563)
T PRK06647 117 SSRYRVYIIDEVHMLS--NSAFNALLKTIEEPPPYIV-FIFATTEVHKLPATIK 167 (563)
T ss_pred cCCCEEEEEEChhhcC--HHHHHHHHHhhccCCCCEE-EEEecCChHHhHHHHH
Confidence 3567899999999986 2333444555554443333 4444454444443333
No 415
>PF12846 AAA_10: AAA-like domain
Probab=82.31 E-value=1.9 Score=43.38 Aligned_cols=42 Identities=29% Similarity=0.562 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa 358 (540)
++++++.|+||+|||.+.. .++..+... +..++|+=|..+..
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-----------g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-----------GPRVVIFDPKGDYS 42 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-----------CCCEEEEcCCchHH
Confidence 3689999999999997765 444444332 34556665554443
No 416
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=82.22 E-value=4.7 Score=47.09 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
..|+++.+|+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 469999999999999763
No 417
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.17 E-value=2 Score=47.22 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHcCC--cEEEEcCCCCCchhhcHHHHHHHHHH
Q 009212 292 SQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQ 332 (540)
Q Consensus 292 tpiQ~~aip~il~G~--dvlv~ApTGSGKTlayllpil~~l~~ 332 (540)
++.|...+..++... =+++.+|||||||.. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 566777777766543 377889999999976 5556665543
No 418
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.10 E-value=3.7 Score=47.86 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=28.8
Q ss_pred ccccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~---gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
.+|.+++..+.+.+.|.+. .+..+.-++... +...+.+++.+|+|+|||+.
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 4677777666666666542 111111111110 11235799999999999975
No 419
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.09 E-value=2.6 Score=46.62 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=30.3
Q ss_pred ccccccccC---CCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 266 SRKSFKELG---CSDYMIESLKRQNF---LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 266 ~~~~F~~l~---L~~~ll~~L~~~gf---~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
+...|++|| |..+.-..+++.-- -.|--+-+-.|+ .=+-+++-+|+|+|||+.
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLI 272 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHH
Confidence 456899996 45565555444210 011112222222 226799999999999974
No 420
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=81.55 E-value=21 Score=33.95 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=32.3
Q ss_pred ccCCCccEEEEeCCcccCCCCC--HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHH
Q 009212 416 LQLINLRCAILDEVDILFNDED--FEVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (540)
Q Consensus 416 ~~l~~i~~LVlDEad~ll~d~~--f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~ 469 (540)
+.-...++||+||+-..+ +.+ -...+..+++.-|...-+|+..-..|+++.+.
T Consensus 92 i~~~~~dlvILDEi~~a~-~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 92 ISSGEYDLVILDEINYAV-DYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp TT-TT-SEEEEETHHHHH-HTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred HhCCCCCEEEEcchHHHh-HCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 334578999999998777 455 34567777777676667777767778887653
No 421
>PRK10436 hypothetical protein; Provisional
Probab=81.19 E-value=2.1 Score=47.14 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=30.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.+|.++|+++..+..|.++ ....+.-+++++|||||||... ..++..+
T Consensus 195 ~~L~~LG~~~~~~~~l~~~--------------~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQA--------------LQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCHHHcCcCHHHHHHHHHH--------------HHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3667777777665544331 1124457899999999999753 3455544
No 422
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=81.08 E-value=1.3 Score=41.79 Aligned_cols=46 Identities=17% Similarity=0.087 Sum_probs=29.0
Q ss_pred HHHHhhcCCCcEEEeChHHHHHHHHhccc--cCCCccEEEEeCCcccC
Q 009212 388 TQLENLQEGVDVLIATPGRFMFLIKEGIL--QLINLRCAILDEVDILF 433 (540)
Q Consensus 388 ~q~~~l~~~~dIlVaTP~rL~~ll~~~~~--~l~~i~~LVlDEad~ll 433 (540)
...+.....+||||++...|++-.....+ ....-.+|||||||.+.
T Consensus 111 ~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 111 YLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp HHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred HHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 34455556689999999888754322222 12233589999999986
No 423
>CHL00095 clpC Clp protease ATP binding subunit
Probab=81.01 E-value=4.5 Score=47.75 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=23.2
Q ss_pred HHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 406 RFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 406 rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
.|...++... .++|+|||+|.+. ..+...+..++..
T Consensus 602 ~l~~~~~~~p-----~~VvllDeieka~--~~v~~~Llq~le~ 637 (821)
T CHL00095 602 QLTEAVRKKP-----YTVVLFDEIEKAH--PDIFNLLLQILDD 637 (821)
T ss_pred hHHHHHHhCC-----CeEEEECChhhCC--HHHHHHHHHHhcc
Confidence 4445554432 3679999999985 4566666666653
No 424
>PF14516 AAA_35: AAA-like domain
Probab=80.63 E-value=7.8 Score=40.64 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHc-CCcEEEEcCCCCCchhhcHHHHHHHHHH
Q 009212 293 QIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQ 332 (540)
Q Consensus 293 piQ~~aip~il~-G~dvlv~ApTGSGKTlayllpil~~l~~ 332 (540)
|+.++++..+.. |.-+.|.||-.+|||.. +.-+++++..
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~ 57 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ 57 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH
Confidence 588889988887 99999999999999964 5555555544
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=80.54 E-value=25 Score=38.46 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.7
Q ss_pred cEEEEcCCCCCchhhcH
Q 009212 307 SCILADQSGSGKTLAYL 323 (540)
Q Consensus 307 dvlv~ApTGSGKTlayl 323 (540)
-+++++++|+|||....
T Consensus 102 vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAG 118 (433)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46788999999997643
No 426
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=80.43 E-value=17 Score=44.04 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh----cCCCcEEEeChHHHHHHHHhccccC
Q 009212 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQL 418 (540)
Q Consensus 343 ~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l----~~~~dIlVaTP~rL~~ll~~~~~~l 418 (540)
..+.++.||.|..+-..++...++.|. +..++.+++|.....+.-+.+ ....||+|||. +-...+++
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDI 871 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDI 871 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCC
Confidence 367899999999999999999999996 578999999998765542222 35689999996 33457788
Q ss_pred CCccEEEEeCCcccC
Q 009212 419 INLRCAILDEVDILF 433 (540)
Q Consensus 419 ~~i~~LVlDEad~ll 433 (540)
.+...|||+-||+|.
T Consensus 872 PnANTiIIe~AD~fG 886 (1139)
T COG1197 872 PNANTIIIERADKFG 886 (1139)
T ss_pred CCCceEEEecccccc
Confidence 999999999999874
No 427
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.37 E-value=5.4 Score=41.60 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=46.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCcHHHHHH-HHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCC
Q 009212 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQAMA-FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~a-ip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~ 344 (540)
....|..-.++..-+ .+ +..+++.|..- |-++..+++++++++||||||. ++.+++..+-.
T Consensus 108 ~IRk~~~~~~t~~~l---~~--~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~------------ 169 (312)
T COG0630 108 TIRKFSDEPITPEDL---IE--YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP------------ 169 (312)
T ss_pred EEEcCCCCCCCHHHH---hh--cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc------------
Confidence 344555555555443 22 34566666554 4456688999999999999995 46666665532
Q ss_pred CCEEEEEccCHHH
Q 009212 345 SPRVVILAPTAEL 357 (540)
Q Consensus 345 ~p~aLIL~PtreL 357 (540)
..+.+.+=-|.|+
T Consensus 170 ~~rivtIEdt~E~ 182 (312)
T COG0630 170 EERIVTIEDTPEL 182 (312)
T ss_pred hhcEEEEeccccc
Confidence 2346666666665
No 428
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.28 E-value=17 Score=40.26 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=25.6
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
...-+++||||||.|. . .....+...++..+... ++++.+|-+..+
T Consensus 117 ~~~~KVvIIDEad~Lt-~-~a~naLLk~LEepp~~~-v~Il~tt~~~kl 162 (486)
T PRK14953 117 KGKYKVYIIDEAHMLT-K-EAFNALLKTLEEPPPRT-IFILCTTEYDKI 162 (486)
T ss_pred cCCeeEEEEEChhhcC-H-HHHHHHHHHHhcCCCCe-EEEEEECCHHHH
Confidence 3467799999999886 2 23334444555444344 344444433333
No 429
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.24 E-value=56 Score=34.17 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=32.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhC------CCCCcEEEEeccCCHHHHHHHHHh
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSS------PVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l------~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
.+.+++|||=+-++..+......+..+.+.. .+..-++.++||...+....+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4567888888877653444455666655432 123356888888765444444433
No 430
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=80.24 E-value=4.4 Score=42.72 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=26.4
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
.+..+++++|||||||... -.++..+.. ....+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~----------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINK----------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCc----------CCCCEEEEEcCChhh
Confidence 4578999999999999653 334443321 113356666555554
No 431
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=80.03 E-value=4.8 Score=47.74 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
.|+++.+|.|+|||..
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4899999999999965
No 432
>PRK08760 replicative DNA helicase; Provisional
Probab=79.81 E-value=8.7 Score=42.48 Aligned_cols=113 Identities=18% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~ 384 (540)
|.=+++.|.+|.|||.. ++-+...+... .+..++|.+ .-.-..|+...+..... +.+... +-.|..
T Consensus 229 G~LivIaarPg~GKTaf-al~iA~~~a~~----------~g~~V~~fS-lEMs~~ql~~Rl~a~~s-~i~~~~-i~~g~l 294 (476)
T PRK08760 229 TDLIILAARPAMGKTTF-ALNIAEYAAIK----------SKKGVAVFS-MEMSASQLAMRLISSNG-RINAQR-LRTGAL 294 (476)
T ss_pred CceEEEEeCCCCChhHH-HHHHHHHHHHh----------cCCceEEEe-ccCCHHHHHHHHHHhhC-CCcHHH-HhcCCC
Confidence 34567788999999964 44444433221 123355553 33334455555443321 011110 112222
Q ss_pred chHHH------HHhhcCCCcEEEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 385 RQKTQ------LENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 385 ~~~~q------~~~l~~~~dIlVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
...+. ...+.+ ..+.|- |++.+...+++-. .-..+++||||=.+.|-
T Consensus 295 ~~~e~~~~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 295 EDEDWARVTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 22111 122222 345444 3455544443211 12358899999998774
No 433
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=79.62 E-value=8.1 Score=40.48 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
.|+=+.+.+|+|+|||... +.++..... .+..++|+-.-..+
T Consensus 54 ~G~iteI~G~~GsGKTtLa-L~~~~~~~~-----------~g~~v~yId~E~~~ 95 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLA-LHAIAEAQK-----------AGGTAAFIDAEHAL 95 (321)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHH-----------cCCcEEEEcccchh
Confidence 4567889999999999754 444433332 14457777554444
No 434
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=79.57 E-value=1.7 Score=43.74 Aligned_cols=44 Identities=27% Similarity=0.448 Sum_probs=30.0
Q ss_pred HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
+..+.+++++++||||||.. +-.++..+... ..+++++--+.|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~-l~all~~i~~~-----------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTL-LNALLEEIPPE-----------DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT-----------TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchH-HHHHhhhcccc-----------ccceEEeccccce
Confidence 45678999999999999965 34455444321 2467887777776
No 435
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.53 E-value=2.3 Score=47.95 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=18.2
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
..-+++++|||||||.. +..++..+
T Consensus 316 ~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 35688999999999976 34455554
No 436
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=79.47 E-value=2.7 Score=46.67 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=25.9
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
+.+-+++|+||+-.-+ |...+..+...+....+++-+++.|
T Consensus 486 l~~~~iliLDE~TSaL-D~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHL-DAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccC-CHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 4456778888888777 6666666666665554344444433
No 437
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.40 E-value=7.9 Score=41.08 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=37.5
Q ss_pred cEEEEeCCcccCCCCC-H-HHHHHHHHHh---------CCCCCcEEEEeccC-CHHHHHHHHHhCCCceEEeCC
Q 009212 422 RCAILDEVDILFNDED-F-EVALQSLISS---------SPVTAQYLFVTATL-PVEIYNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~-f-~~~i~~Il~~---------l~~~~Q~ll~SATl-p~~i~~~l~~~l~~~~~i~~~ 483 (540)
..+.|||+|.++...+ . .+.+..+... .....|++++.||- |.++-+.+.+.++....+-.+
T Consensus 188 ~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP 261 (386)
T KOG0737|consen 188 SIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLP 261 (386)
T ss_pred ceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCC
Confidence 3578899999984111 1 1111111111 12356799999997 777777777888776665544
No 438
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=79.17 E-value=14 Score=36.47 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc---cCHHHHHHHHHHHH
Q 009212 308 CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA---PTAELASQVLSNCR 366 (540)
Q Consensus 308 vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~---PtreLa~Qi~~~l~ 366 (540)
.++.|+.|+|||...+--++.................+.++||+. |..++..++.....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 578999999999875544443322111100001112355788887 33344444433333
No 439
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=79.06 E-value=6.9 Score=42.03 Aligned_cols=17 Identities=41% Similarity=0.438 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.++|+.+|.|+|||-.+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 38999999999999643
No 440
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=78.91 E-value=12 Score=40.39 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=54.0
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|+++..|..+++.+... ++.+..++|+....++...+ . ..++|||||- .+. ..+++.+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~ 323 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPA 323 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCccc
Confidence 457999999999999988888654 46888899988766554433 2 4589999994 333 4677888
Q ss_pred ccEEEEeC
Q 009212 421 LRCAILDE 428 (540)
Q Consensus 421 i~~LVlDE 428 (540)
++++|.-+
T Consensus 324 v~~VI~~d 331 (423)
T PRK04837 324 VTHVFNYD 331 (423)
T ss_pred cCEEEEeC
Confidence 98887543
No 441
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=78.62 E-value=1.8 Score=49.73 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..++++.||||||||..+.+|-+-... .-+||+=|--|+...+....+++
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~--------------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP--------------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC--------------CCEEEEeCcchHHHHHHHHHHhC
Confidence 369999999999999999999765431 13777777778777666655543
No 442
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=77.97 E-value=14 Score=38.18 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=25.5
Q ss_pred hHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 404 PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 404 P~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
|+-|..+|.. +..=++|.|||+|+|. ...++.+--.++-
T Consensus 91 ~gDlaaiLt~----Le~~DVLFIDEIHrl~--~~vEE~LYpaMED 129 (332)
T COG2255 91 PGDLAAILTN----LEEGDVLFIDEIHRLS--PAVEEVLYPAMED 129 (332)
T ss_pred hhhHHHHHhc----CCcCCeEEEehhhhcC--hhHHHHhhhhhhh
Confidence 6666666653 4555679999999996 4555555544543
No 443
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=77.76 E-value=9.8 Score=45.18 Aligned_cols=54 Identities=13% Similarity=0.200 Sum_probs=31.4
Q ss_pred HHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC----------CCCcEEEEeccCCHH
Q 009212 405 GRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP----------VTAQYLFVTATLPVE 465 (540)
Q Consensus 405 ~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~----------~~~Q~ll~SATlp~~ 465 (540)
+.|...+++. ...+|+|||++.+. ..+...+..++..-. -..-++++|+.+..+
T Consensus 658 g~L~~~v~~~-----p~svvllDEieka~--~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~ 721 (852)
T TIGR03345 658 GVLTEAVRRK-----PYSVVLLDEVEKAH--PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSD 721 (852)
T ss_pred chHHHHHHhC-----CCcEEEEechhhcC--HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchH
Confidence 3445555543 34579999999875 455566666654321 123566666666543
No 444
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=77.63 E-value=14 Score=38.52 Aligned_cols=49 Identities=10% Similarity=0.262 Sum_probs=33.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLV 471 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~ 471 (540)
..-+++|||+||.|- ..-...+.++++.-| ...+|+++. -+..+...|.
T Consensus 123 ~~~kVvII~~ae~m~--~~aaNaLLK~LEEPp-~~~fILi~~-~~~~Ll~TI~ 171 (314)
T PRK07399 123 APRKVVVIEDAETMN--EAAANALLKTLEEPG-NGTLILIAP-SPESLLPTIV 171 (314)
T ss_pred CCceEEEEEchhhcC--HHHHHHHHHHHhCCC-CCeEEEEEC-ChHhCcHHHH
Confidence 567899999999996 456677778888777 666666554 3344433333
No 445
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=77.58 E-value=26 Score=37.63 Aligned_cols=47 Identities=21% Similarity=0.087 Sum_probs=34.6
Q ss_pred CCccEEEEeCCcccCCCCC--HHHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 419 INLRCAILDEVDILFNDED--FEVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~--f~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
...-+||+|.||.+- |++ .-+.+-++-+.++...-.+++|++.++..
T Consensus 114 d~~~~liLDnad~lr-D~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~ 162 (438)
T KOG2543|consen 114 DQKVFLILDNADALR-DMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQ 162 (438)
T ss_pred CceEEEEEcCHHhhh-ccchHHHHHHHHHHHHhCCCceEEEEeccccHHH
Confidence 345689999999998 665 34455556666676777888999998775
No 446
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=77.54 E-value=17 Score=35.14 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCCchhhcHH
Q 009212 305 GKSCILADQSGSGKTLAYLL 324 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayll 324 (540)
|.-+++.+++|+|||...+-
T Consensus 19 g~i~~i~G~~GsGKT~l~~~ 38 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQ 38 (218)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999975433
No 447
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=77.47 E-value=5.2 Score=42.26 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=38.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHH-HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH
Q 009212 280 IESLKRQNFLRPSQIQAMAFPPV-VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL 357 (540)
Q Consensus 280 l~~L~~~gf~~ptpiQ~~aip~i-l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL 357 (540)
+..|.+.|+ +++.+...+..+ ..+++++++++||||||.. +-.++..+. ...+.+++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~------------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVA------------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCC------------CCCcEEEECCccee
Confidence 334445554 445566655554 4567999999999999964 223333221 12356777777776
No 448
>PRK10865 protein disaggregation chaperone; Provisional
Probab=77.39 E-value=6 Score=46.98 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.++++.+|+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999753
No 449
>CHL00176 ftsH cell division protein; Validated
Probab=77.35 E-value=12 Score=43.06 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=28.0
Q ss_pred ccccccCCCHHHHHHHHHC-C-CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQ-N-FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~-g-f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
.+|+++.-.++..+.|.+. . +..+..++... ....+.+++.+|+|+|||+.
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g---~~~p~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVG---AKIPKGVLLVGPPGTGKTLL 232 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhcc---CCCCceEEEECCCCCCHHHH
Confidence 4677776555555555442 1 11111111110 11236799999999999975
No 450
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=77.27 E-value=2.4 Score=48.48 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=37.4
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
+++++.||||||||..+++|.+-.. +..+||+=|-.|+...+....++
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~--------------~~S~VV~D~KGE~~~~Tag~R~~ 223 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW--------------GHSSVITDLKGELWALTAGWRQK 223 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC--------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 6899999999999999999987432 22488888999987666555433
No 451
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=77.25 E-value=6.2 Score=44.33 Aligned_cols=44 Identities=25% Similarity=0.249 Sum_probs=30.6
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
+.+-++||+|||-.-+ |...+..++..+..+.+.+.+++.+--+
T Consensus 481 l~~~~ILILDEaTSal-D~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 481 LRNPPILILDEATSAL-DTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred hcCCCEEEEecccccc-CHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 4455789999999988 7777878877776555555555544433
No 452
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.20 E-value=1.3 Score=45.98 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.|+++.+|||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 58999999999999754
No 453
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=77.08 E-value=14 Score=39.89 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=53.6
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|++++-|..++..+... ++.+..++|+....+....+ . ...+|||||- .+. ..+++.+
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~-----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~-~GiDip~ 313 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA-----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAA-RGIDIDD 313 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC-----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCccCCC
Confidence 468999999999999999888763 46788899988776654443 2 3479999993 333 4567889
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 314 v~~VI~ 319 (434)
T PRK11192 314 VSHVIN 319 (434)
T ss_pred CCEEEE
Confidence 998874
No 454
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=76.96 E-value=5.4 Score=46.39 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.4
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
.+++.+|||.|||..
T Consensus 523 sFlF~GPTGVGKTEL 537 (786)
T COG0542 523 SFLFLGPTGVGKTEL 537 (786)
T ss_pred EEEeeCCCcccHHHH
Confidence 789999999999953
No 455
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=76.88 E-value=17 Score=42.41 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.|+++.+|+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 59999999999999753
No 456
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=76.85 E-value=19 Score=42.75 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.+.++.+|+|.|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999754
No 457
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=76.82 E-value=2.8 Score=48.05 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=38.4
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..++++.||||+|||..+.+|-+-.. +.-+||+=|-.|+...+....+++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~--------------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW--------------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC--------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 36899999999999999999975321 123777779889887777766555
No 458
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=76.73 E-value=5 Score=46.76 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=18.1
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
..+|+|||+|.+. ......+..++.
T Consensus 554 ~~VvllDEieka~--~~~~~~Ll~~ld 578 (731)
T TIGR02639 554 HCVLLLDEIEKAH--PDIYNILLQVMD 578 (731)
T ss_pred CeEEEEechhhcC--HHHHHHHHHhhc
Confidence 4689999999986 455556666654
No 459
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=76.68 E-value=9.8 Score=41.07 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=21.1
Q ss_pred cHHHHHHHHH---HHcCCcEEEEcCCCCCchh
Q 009212 292 SQIQAMAFPP---VVEGKSCILADQSGSGKTL 320 (540)
Q Consensus 292 tpiQ~~aip~---il~G~dvlv~ApTGSGKTl 320 (540)
.++=.++|.. +-.|+-.+|.||.|.|||.
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTT 184 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTV 184 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhH
Confidence 3444455544 3478899999999999995
No 460
>PRK09087 hypothetical protein; Validated
Probab=76.55 E-value=10 Score=37.49 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+.-+++.+++|+|||-.
T Consensus 44 ~~~l~l~G~~GsGKThL 60 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHL 60 (226)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34589999999999953
No 461
>PHA02535 P terminase ATPase subunit; Provisional
Probab=76.44 E-value=12 Score=42.24 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
++++....|.+.-...+.++|+..+..-+..+.-++.-.--.|||+.|..-++...... +...++|.|+
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~-----------G~nqiflSas 191 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT-----------GRNQIFLSAS 191 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc-----------CCceEEECCC
Confidence 45555555555444678899999875522234444445556789999887777655432 4468999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 009212 355 AELASQVLSNCRSLSK 370 (540)
Q Consensus 355 reLa~Qi~~~l~~l~~ 370 (540)
++.|.+....+..+++
T Consensus 192 ~~QA~~f~~yi~~~a~ 207 (581)
T PHA02535 192 KAQAHVFKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888887755
No 462
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=76.39 E-value=2.2 Score=46.16 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=22.5
Q ss_pred HHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 299 FPPVVEGKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 299 ip~il~G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
+|.-...+++++.|+||||||.+ +..++..+.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~ 67 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIR 67 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHH
Confidence 34445568999999999999975 444444443
No 463
>PTZ00293 thymidine kinase; Provisional
Probab=76.37 E-value=13 Score=36.65 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
|+=.++.+|.+||||.- ||-.+.+... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~-----------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTY-----------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHH-----------cCCceEEEEecc
Confidence 44467899999999953 3333433322 244688887754
No 464
>PRK04841 transcriptional regulator MalT; Provisional
Probab=76.14 E-value=23 Score=41.83 Aligned_cols=41 Identities=12% Similarity=0.377 Sum_probs=34.0
Q ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
-+||||++|.+- +......+..++...+....+|+.|-+.|
T Consensus 123 ~~lvlDD~h~~~-~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLIT-NPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCC-ChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 479999999986 55677789999999998888888887754
No 465
>PRK06321 replicative DNA helicase; Provisional
Probab=76.09 E-value=19 Score=39.83 Aligned_cols=138 Identities=15% Similarity=0.180 Sum_probs=63.5
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEE-eCCc
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TGGF 384 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l-~Gg~ 384 (540)
.=+++.|.+|.|||.. .+-+...+... .+..++|.+ .-.-..|+...+..... .+....+ .|..
T Consensus 227 ~LiiiaarPgmGKTaf-al~ia~~~a~~----------~g~~v~~fS-LEMs~~ql~~Rlla~~s---~v~~~~i~~~~l 291 (472)
T PRK06321 227 NLMILAARPAMGKTAL-ALNIAENFCFQ----------NRLPVGIFS-LEMTVDQLIHRIICSRS---EVESKKISVGDL 291 (472)
T ss_pred cEEEEEeCCCCChHHH-HHHHHHHHHHh----------cCCeEEEEe-ccCCHHHHHHHHHHhhc---CCCHHHhhcCCC
Confidence 3456678999999964 44455444321 122344443 33334444444432211 1111111 2222
Q ss_pred chHHH------HHhhcCCCcEEEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccCCC------CCHHHHHHHHHH
Q 009212 385 RQKTQ------LENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND------EDFEVALQSLIS 447 (540)
Q Consensus 385 ~~~~q------~~~l~~~~dIlVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d------~~f~~~i~~Il~ 447 (540)
...+. ...+.+ ..+.|- |...+...++.-. .-..+++||||=.+.|-.. ......+..|.+
T Consensus 292 ~~~e~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr 369 (472)
T PRK06321 292 SGRDFQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISR 369 (472)
T ss_pred CHHHHHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHH
Confidence 22221 122222 345554 4445544443311 1235889999999887521 112234444444
Q ss_pred hCC-----CCCcEEEEec
Q 009212 448 SSP-----VTAQYLFVTA 460 (540)
Q Consensus 448 ~l~-----~~~Q~ll~SA 460 (540)
.+. .++.++++|.
T Consensus 370 ~LK~lAkel~vpVi~lsQ 387 (472)
T PRK06321 370 MLKNLARELNIPILCLSQ 387 (472)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 332 2566666655
No 466
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.07 E-value=51 Score=37.06 Aligned_cols=98 Identities=22% Similarity=0.230 Sum_probs=73.6
Q ss_pred CCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH---HHH
Q 009212 314 SGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK---TQL 390 (540)
Q Consensus 314 TGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~---~q~ 390 (540)
.+.|++..-++++.+.+... -.|-+||.+-+.+-|.|++..+..+ .++.+.+++|..... +.+
T Consensus 366 vF~gse~~K~lA~rq~v~~g----------~~PP~lIfVQs~eRak~L~~~L~~~----~~i~v~vIh~e~~~~qrde~~ 431 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG----------FKPPVLIFVQSKERAKQLFEELEIY----DNINVDVIHGERSQKQRDETM 431 (593)
T ss_pred eeeecchhHHHHHHHHHhcc----------CCCCeEEEEecHHHHHHHHHHhhhc----cCcceeeEecccchhHHHHHH
Confidence 36788888788887777542 4678999999999999999988722 578899999986543 334
Q ss_pred HhhcCC-CcEEEeChHHHHHHHHhccccCCCccEEEEeCCcc
Q 009212 391 ENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDI 431 (540)
Q Consensus 391 ~~l~~~-~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ 431 (540)
.+++.| ..|+|||- ++.+ .++|..+.+||-+++-.
T Consensus 432 ~~FR~g~IwvLicTd-----ll~R-GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 432 ERFRIGKIWVLICTD-----LLAR-GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred HHHhccCeeEEEehh-----hhhc-cccccCcceEEecCCCc
Confidence 455443 78999984 5555 48899999999977743
No 467
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.77 E-value=18 Score=41.27 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l 470 (540)
+..-+++||||+|.|. ..-...+..+++..+....+|+ .+|-+..+...|
T Consensus 119 ~~~~KVvIIdea~~Ls--~~a~naLLK~LEepp~~tifIL-~tt~~~kIl~tI 168 (614)
T PRK14971 119 IGKYKIYIIDEVHMLS--QAAFNAFLKTLEEPPSYAIFIL-ATTEKHKILPTI 168 (614)
T ss_pred cCCcEEEEEECcccCC--HHHHHHHHHHHhCCCCCeEEEE-EeCCchhchHHH
Confidence 4567899999999996 3445566666666555444444 445444443333
No 468
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=75.68 E-value=18 Score=39.63 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=52.8
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|+++.-+..++..+... ++.+..++|+....+....+ . ...+|||||- .+. ..+++..
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~-rGiDip~ 313 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD-----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA-RGLDIEE 313 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh-cCCCccc
Confidence 457999999999999998888654 46788899988765554333 3 3579999994 333 4677888
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 314 v~~VI~ 319 (456)
T PRK10590 314 LPHVVN 319 (456)
T ss_pred CCEEEE
Confidence 988874
No 469
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.65 E-value=14 Score=41.31 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=34.7
Q ss_pred HHHHHHHHhccccCCCccEEEEeCCcccCCC-----CC-HHHHHHHHHHhC---CCCCcEEEEeccC-CHHH
Q 009212 405 GRFMFLIKEGILQLINLRCAILDEVDILFND-----ED-FEVALQSLISSS---PVTAQYLFVTATL-PVEI 466 (540)
Q Consensus 405 ~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d-----~~-f~~~i~~Il~~l---~~~~Q~ll~SATl-p~~i 466 (540)
-|+.+++..-.- ..-..+.|||+|.+-+. .. ....+..++..+ ..+--+|++.||- |+.+
T Consensus 383 rRVRdLF~aAk~--~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 383 RRVRDLFAAAKA--RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred HHHHHHHHHHHh--cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 456666654322 12335788999998741 11 233455555444 3456789999995 5544
No 470
>PRK08506 replicative DNA helicase; Provisional
Probab=75.32 E-value=12 Score=41.38 Aligned_cols=141 Identities=13% Similarity=0.198 Sum_probs=65.6
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|.=+++.|.+|.|||.. ++-+...+.. .+..++|++ .-.-+.|+...+-.... +.++.- +..|.
T Consensus 191 ~G~LivIaarpg~GKT~f-al~ia~~~~~-----------~g~~V~~fS-lEMs~~ql~~Rlla~~s-~v~~~~-i~~~~ 255 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTL-CLNMALKALN-----------QDKGVAFFS-LEMPAEQLMLRMLSAKT-SIPLQN-LRTGD 255 (472)
T ss_pred CCceEEEEcCCCCChHHH-HHHHHHHHHh-----------cCCcEEEEe-CcCCHHHHHHHHHHHhc-CCCHHH-HhcCC
Confidence 345677789999999964 4444433322 133455554 33455555555433211 111111 01222
Q ss_pred cchHHH------HHhhcCCCcEEEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccCCCC---CHHHHHHHHHHhC
Q 009212 384 FRQKTQ------LENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFNDE---DFEVALQSLISSS 449 (540)
Q Consensus 384 ~~~~~q------~~~l~~~~dIlVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~---~f~~~i~~Il~~l 449 (540)
....+. ...+.+ ..+.|- |+..+...+++-......++++|||=.+.|.... .....+..|.+.+
T Consensus 256 l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~L 334 (472)
T PRK08506 256 LDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGL 334 (472)
T ss_pred CCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHH
Confidence 222111 122222 344442 4455554443311112358899999998775211 1223334343322
Q ss_pred ---C--CCCcEEEEec
Q 009212 450 ---P--VTAQYLFVTA 460 (540)
Q Consensus 450 ---~--~~~Q~ll~SA 460 (540)
. .++.++++|.
T Consensus 335 K~lAkel~ipVi~lsQ 350 (472)
T PRK08506 335 KLLARELDIPIIALSQ 350 (472)
T ss_pred HHHHHHhCCcEEEEee
Confidence 2 2566677664
No 471
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=75.30 E-value=2.7 Score=45.10 Aligned_cols=48 Identities=23% Similarity=0.464 Sum_probs=29.5
Q ss_pred HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
-...+++++.+.||||||. ++.+++..+... +-++||.=|.-+.....
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~-----------g~~~iI~D~kg~~~~~f 59 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRAR-----------GDRAIIYDPKGEFTERF 59 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT-----------T-EEEEEEETTHHHHHH
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHHc-----------CCEEEEEECCchHHHHh
Confidence 3456899999999999997 456677666543 33455555555554433
No 472
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=75.01 E-value=5.8 Score=39.73 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC---HHHHHHHHHHHHhhhcCCCCceEEEEe
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT---AELASQVLSNCRSLSKCGVPFRSMVVT 381 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt---reLa~Qi~~~l~~l~~~~~~l~v~~l~ 381 (540)
|.=+++.|.+|.|||... +-+...+... .+..++|++.- .+++..+....... +.. .+.
T Consensus 19 g~L~vi~a~pg~GKT~~~-l~ia~~~a~~----------~~~~vly~SlEm~~~~l~~R~la~~s~v-----~~~--~i~ 80 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFA-LQIALNAALN----------GGYPVLYFSLEMSEEELAARLLARLSGV-----PYN--KIR 80 (259)
T ss_dssp T-EEEEEESTTSSHHHHH-HHHHHHHHHT----------TSSEEEEEESSS-HHHHHHHHHHHHHTS-----THH--HHH
T ss_pred CcEEEEEecccCCchHHH-HHHHHHHHHh----------cCCeEEEEcCCCCHHHHHHHHHHHhhcc-----hhh--hhh
Confidence 345777899999999654 4444444332 13467887753 44444443333221 110 011
Q ss_pred CCcchHHHHH-------hhcCCCcEEEeC----hHHHHHHHHhccccCCCccEEEEeCCcccCC
Q 009212 382 GGFRQKTQLE-------NLQEGVDVLIAT----PGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (540)
Q Consensus 382 Gg~~~~~q~~-------~l~~~~dIlVaT----P~rL~~ll~~~~~~l~~i~~LVlDEad~ll~ 434 (540)
.+.-...++. .+....-++..+ ++.+...++.-......+++||||=.+.|-.
T Consensus 81 ~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 81 SGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp CCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred ccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 1111112212 222222233344 3455555543222236889999999998863
No 473
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=74.47 E-value=2.5 Score=48.15 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=34.6
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
.++++.||||||||..+.+|-+-.. +--+|++=|--|+...+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~--------------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY--------------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC--------------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 6999999999999999999964322 112666667777766655544444
No 474
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=74.24 E-value=12 Score=38.58 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=30.2
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i 466 (540)
...-+++|||+||.|- ..-...+...++..|...-+++.+ +-+..+
T Consensus 91 ~~~~kv~iI~~ad~m~--~~a~naLLK~LEepp~~t~~il~~-~~~~~l 136 (313)
T PRK05564 91 EGDKKVIIIYNSEKMT--EQAQNAFLKTIEEPPKGVFIILLC-ENLEQI 136 (313)
T ss_pred cCCceEEEEechhhcC--HHHHHHHHHHhcCCCCCeEEEEEe-CChHhC
Confidence 3567899999999986 345666667777655555555544 544443
No 475
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=74.18 E-value=4.5 Score=41.04 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=21.6
Q ss_pred HHHHHHHHH--cCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 295 QAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 295 Q~~aip~il--~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
|.+.|..++ .+..++++++||||||-. +..++..+
T Consensus 68 ~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 68 NLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 444443333 234688999999999965 33444444
No 476
>PRK08840 replicative DNA helicase; Provisional
Probab=74.13 E-value=31 Score=38.01 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=23.6
Q ss_pred CccEEEEeCCcccCC-C--CCHHHHHHHHHHhCC-----CCCcEEEEec
Q 009212 420 NLRCAILDEVDILFN-D--EDFEVALQSLISSSP-----VTAQYLFVTA 460 (540)
Q Consensus 420 ~i~~LVlDEad~ll~-d--~~f~~~i~~Il~~l~-----~~~Q~ll~SA 460 (540)
.+++||||-.+.|-. . ......+..|.+.+. .++.++++|.
T Consensus 329 ~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQ 377 (464)
T PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQ 377 (464)
T ss_pred CCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 588999999998841 1 122233444433332 2566777763
No 477
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.00 E-value=4.6 Score=46.22 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
+.+-+.||+|||---+ |..-+..++..+..+..+ +++++=|
T Consensus 620 lr~P~VLILDEATSAL-DaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSAL-DAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhc-chhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 4556789999999999 788888888888776655 5555544
No 478
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=73.60 E-value=6.2 Score=45.19 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=38.3
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH--HHHHHHHHHHhhhc
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE--LASQVLSNCRSLSK 370 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre--La~Qi~~~l~~l~~ 370 (540)
.++++|.++||+|||..+.+-+.+.+.. +..++++=|-.. |...+...++..+.
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~------------g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR------------GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 4799999999999998765545444432 345777777754 77777777777654
No 479
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=73.48 E-value=12 Score=43.95 Aligned_cols=26 Identities=15% Similarity=0.020 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHh--CCCCcEEEEeccc
Q 009212 514 LNKKSALLQLIEK--SPVSKTIVFCNKK 539 (540)
Q Consensus 514 ~~K~~~L~~ll~~--~~~~rtIIFcnSr 539 (540)
..|..+|.+.+.. ....++||||+|+
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si 450 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAI 450 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcH
Confidence 4688888887754 3678999999986
No 480
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=73.44 E-value=4.8 Score=41.74 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=17.9
Q ss_pred HHHcCCcEEEEcCCCCCchhh
Q 009212 301 PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTla 321 (540)
.+..+.+++++++||||||..
T Consensus 140 ~v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHH
Confidence 355788999999999999964
No 481
>PTZ00110 helicase; Provisional
Probab=73.36 E-value=14 Score=41.52 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=53.4
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh---hcC-CCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQE-GVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l~~-~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.|+++.-|..+...++.. ++.+..++|+....+.... +.. ...|||||- .+ ...+++.
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~-----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~-~rGIDi~ 444 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD-----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VA-SRGLDVK 444 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc-----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hh-hcCCCcc
Confidence 4678999999999999998888643 4577888998876654333 333 478999994 33 3467788
Q ss_pred CccEEEE
Q 009212 420 NLRCAIL 426 (540)
Q Consensus 420 ~i~~LVl 426 (540)
++++||.
T Consensus 445 ~v~~VI~ 451 (545)
T PTZ00110 445 DVKYVIN 451 (545)
T ss_pred cCCEEEE
Confidence 8998876
No 482
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=73.32 E-value=13 Score=36.26 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCCchhhcHHHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPV 326 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpi 326 (540)
|.-+++.+++|+|||...+-.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la 44 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLA 44 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999997644333
No 483
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.01 E-value=4.7 Score=44.69 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=16.4
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHH
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l 330 (540)
-+++++|||||||... ..++..+
T Consensus 244 lilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 244 IILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred EEEEEcCCCCCHHHHH-HHHHhcc
Confidence 4789999999999753 3344444
No 484
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=72.98 E-value=22 Score=34.45 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCccEEEEeCCcccCCCCCH--HHHHHHHHHhCCCCCcEEEEeccCCHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDF--EVALQSLISSSPVTAQYLFVTATLPVEIYNK 469 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f--~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~ 469 (540)
...+++|+||+...+ ..++ .+.+..++..-|...-+|+..-..|+++.+.
T Consensus 121 ~~ydlviLDEl~~al-~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 121 GKYDLVILDELNYAL-RYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred CCCCEEEEehhhHHH-HcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 368899999999887 4553 3455556665554444454444578887654
No 485
>PRK07773 replicative DNA helicase; Validated
Probab=72.90 E-value=16 Score=43.62 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCc
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGF 384 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~ 384 (540)
|.=+++.|++|+|||.. .+-+...+... .+..++|++ .-.-..|+...+..... +.+..- +-.|..
T Consensus 217 G~livIagrPg~GKT~f-al~ia~~~a~~----------~~~~V~~fS-lEms~~ql~~R~~s~~~-~i~~~~-i~~g~l 282 (886)
T PRK07773 217 GQLIIVAARPSMGKTTF-GLDFARNCAIR----------HRLAVAIFS-LEMSKEQLVMRLLSAEA-KIKLSD-MRSGRM 282 (886)
T ss_pred CcEEEEEeCCCCCcHHH-HHHHHHHHHHh----------cCCeEEEEe-cCCCHHHHHHHHHHHhc-CCCHHH-HhcCCC
Confidence 34477789999999965 44444443221 122355543 44445555555544321 111110 011222
Q ss_pred chHHHHHhhc------CCCcEEE-----eChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 385 RQKTQLENLQ------EGVDVLI-----ATPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 385 ~~~~q~~~l~------~~~dIlV-----aTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
.. .++..+. ....|.| .|+..+..-+++-. .-..++++|||=.+.|.
T Consensus 283 ~~-~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~-~~~~~~lvvIDyLql~~ 340 (886)
T PRK07773 283 SD-DDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLR-QEANLGLIVVDYLQLMT 340 (886)
T ss_pred CH-HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchhhcC
Confidence 21 1211111 1234555 24455543332211 11358899999998885
No 486
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.68 E-value=64 Score=34.00 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcc--CHHHHHHHHHHHHhhhcCCCCceEEEE-eCC
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP--TAELASQVLSNCRSLSKCGVPFRSMVV-TGG 383 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~P--treLa~Qi~~~l~~l~~~~~~l~v~~l-~Gg 383 (540)
-+++++-+|+|||.... =+.+.+.. .+.++++.+- .|+=|.++.+.+-+-. ++.+..- .|+
T Consensus 141 Vil~vGVNG~GKTTTIa--KLA~~l~~----------~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~ 204 (340)
T COG0552 141 VILFVGVNGVGKTTTIA--KLAKYLKQ----------QGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGA 204 (340)
T ss_pred EEEEEecCCCchHhHHH--HHHHHHHH----------CCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCC
Confidence 36778999999998632 22222222 2445655552 4666655555444322 1222211 122
Q ss_pred cchHHHHHhhcCCCcEEEeChHHH-HHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCC------cEE
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRF-MFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTA------QYL 456 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~------Q~l 456 (540)
. |..+ .+.++.. ...++++|++|=|-+|....+....+++|.+.+.+.. -++
T Consensus 205 D-------------------pAaVafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~ll 263 (340)
T COG0552 205 D-------------------PAAVAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILL 263 (340)
T ss_pred C-------------------cHHHHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEE
Confidence 1 3322 2344332 2356788999999999876778888888888775532 344
Q ss_pred EEeccCCHHHHH
Q 009212 457 FVTATLPVEIYN 468 (540)
Q Consensus 457 l~SATlp~~i~~ 468 (540)
.+=||.-..-.+
T Consensus 264 vlDAttGqnal~ 275 (340)
T COG0552 264 VLDATTGQNALS 275 (340)
T ss_pred EEEcccChhHHH
Confidence 448988654433
No 487
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=72.64 E-value=3.3 Score=40.28 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=12.1
Q ss_pred EEEEcCCCCCchhh
Q 009212 308 CILADQSGSGKTLA 321 (540)
Q Consensus 308 vlv~ApTGSGKTla 321 (540)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 488
>PRK10263 DNA translocase FtsK; Provisional
Probab=72.46 E-value=13 Score=45.48 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=19.4
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
-++||.+-||||||.+...-|+..+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~ 1036 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLY 1036 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999875544444443
No 489
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=72.37 E-value=4 Score=40.21 Aligned_cols=35 Identities=40% Similarity=0.482 Sum_probs=31.2
Q ss_pred CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCC
Q 009212 395 EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (540)
Q Consensus 395 ~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEa 429 (540)
+..++-||||+|+-.+++...+.++.+.++|+|=-
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWS 229 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEeecc
Confidence 34789999999999999998899999999999854
No 490
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=72.28 E-value=12 Score=44.58 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEecccC
Q 009212 514 LNKKSALLQLIEKS--PVSKTIVFCNKKS 540 (540)
Q Consensus 514 ~~K~~~L~~ll~~~--~~~rtIIFcnSr~ 540 (540)
..|..+|.+.+... ...++||||+|++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve 609 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVE 609 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHH
Confidence 46888998888543 5679999999963
No 491
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=72.18 E-value=7.6 Score=44.40 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH--HHHHHHHHHHHhhhc
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA--ELASQVLSNCRSLSK 370 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr--eLa~Qi~~~l~~l~~ 370 (540)
..+++|.++||+|||..+.+-+.+.+.. +..++++=|-. +|...++..++..++
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~------------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR------------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc------------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4799999999999999877666665532 44678888876 678888888887765
No 492
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=71.89 E-value=12 Score=41.64 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=57.3
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHHHhccccC
Q 009212 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQL 418 (540)
Q Consensus 343 ~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll~~~~~~l 418 (540)
....++||.|-|+.-|.++...++.. .+.+.+++|+..+.+....|. ..+.|||||-= -.+.+++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV------AaRGLDi 407 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV------AARGLDV 407 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc-----CcceeeecccccHHHHHHHHHhcccCCcceEEEccc------ccccCCC
Confidence 45779999999999999999888864 368899999998877655553 34899999952 2357788
Q ss_pred CCccEEEE
Q 009212 419 INLRCAIL 426 (540)
Q Consensus 419 ~~i~~LVl 426 (540)
.+|++||-
T Consensus 408 ~dV~lVIn 415 (519)
T KOG0331|consen 408 PDVDLVIN 415 (519)
T ss_pred ccccEEEe
Confidence 88888875
No 493
>PHA00350 putative assembly protein
Probab=71.57 E-value=34 Score=37.00 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=31.2
Q ss_pred CccEEEEeCCcccCCCC-C---------------------HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHH
Q 009212 420 NLRCAILDEVDILFNDE-D---------------------FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~-~---------------------f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~ 472 (540)
.=.+|||||||.++... + -...++.+..+-+...=++++|..+. .|...++.
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~-~Id~~iR~ 154 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR-KIHSDIRA 154 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH-HhhHHHHH
Confidence 34689999999987411 1 12345555555555667888877653 33344443
No 494
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=71.39 E-value=28 Score=40.02 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=26.8
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCC---CCCcEEEEeccC
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSP---VTAQYLFVTATL 462 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~---~~~Q~ll~SATl 462 (540)
...+|+|||.|.|. ..-...+..|+.... .+--+|++.-|+
T Consensus 508 ~~~VvLiDElD~Lv--tr~QdVlYn~fdWpt~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 508 STTVVLIDELDILV--TRSQDVLYNIFDWPTLKNSKLVVIAIANTM 551 (767)
T ss_pred CCEEEEeccHHHHh--cccHHHHHHHhcCCcCCCCceEEEEecccc
Confidence 44578899999998 234566677776542 234566667776
No 495
>PRK08006 replicative DNA helicase; Provisional
Probab=71.25 E-value=39 Score=37.39 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEE-eCC
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV-TGG 383 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l-~Gg 383 (540)
|.=+++.|.+|.|||.. .+-+...+... .+..++|... -.-..|+...+-.... ++....+ .|.
T Consensus 224 G~LiiIaarPgmGKTaf-alnia~~~a~~----------~g~~V~~fSl-EM~~~ql~~Rlla~~~---~v~~~~i~~~~ 288 (471)
T PRK08006 224 SDLIIVAARPSMGKTTF-AMNLCENAAML----------QDKPVLIFSL-EMPGEQIMMRMLASLS---RVDQTRIRTGQ 288 (471)
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHh----------cCCeEEEEec-cCCHHHHHHHHHHHhc---CCCHHHhhcCC
Confidence 44566688999999954 44444443211 1233555543 2334444444332211 1111111 222
Q ss_pred cchHHH------HHhhcCCCcEEEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccCCC---CCHHHHHHHHHHhC
Q 009212 384 FRQKTQ------LENLQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILFND---EDFEVALQSLISSS 449 (540)
Q Consensus 384 ~~~~~q------~~~l~~~~dIlVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d---~~f~~~i~~Il~~l 449 (540)
....+. ...+.....+.|- |+..+...+++-......+++||||=.+.|-.. ......+..|.+.+
T Consensus 289 l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~L 368 (471)
T PRK08006 289 LDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSL 368 (471)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHH
Confidence 222221 1122123445553 455554444321111235889999999987521 12333444454333
Q ss_pred C-----CCCcEEEEec
Q 009212 450 P-----VTAQYLFVTA 460 (540)
Q Consensus 450 ~-----~~~Q~ll~SA 460 (540)
. .++.++++|.
T Consensus 369 K~lAkel~ipVi~LsQ 384 (471)
T PRK08006 369 KALAKELQVPVVALSQ 384 (471)
T ss_pred HHHHHHhCCeEEEEEe
Confidence 2 2566777764
No 496
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=71.20 E-value=24 Score=38.42 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=54.2
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|+++.-+..+++.+... ++.+..++|+....++...+ . ...+|||||- .+ ...+++.+
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~-----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~-~rGiDi~~ 310 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ-----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VA-ARGLDIKA 310 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----cc-ccccchhc
Confidence 346999999999999999888764 46788999998776554433 2 3478999994 23 34667888
Q ss_pred ccEEEEeCC
Q 009212 421 LRCAILDEV 429 (540)
Q Consensus 421 i~~LVlDEa 429 (540)
++++|.-+.
T Consensus 311 v~~VI~~d~ 319 (460)
T PRK11776 311 LEAVINYEL 319 (460)
T ss_pred CCeEEEecC
Confidence 888876443
No 497
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=71.18 E-value=30 Score=39.65 Aligned_cols=80 Identities=15% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCEEEEEccCHH--------HHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHH
Q 009212 344 GSPRVVILAPTAE--------LASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLI 411 (540)
Q Consensus 344 ~~p~aLIL~Ptre--------La~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll 411 (540)
.+.+++|+||+.+ -+.++++.+.+.. .++.+..++|+....+....+ . ...+|||||. .+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi 518 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VI 518 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ee
Confidence 3567999999863 3444555555432 457899999998765543333 3 3589999996 22
Q ss_pred HhccccCCCccEEEEeCCccc
Q 009212 412 KEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 412 ~~~~~~l~~i~~LVlDEad~l 432 (540)
...+++.+++++|+..++..
T Consensus 519 -e~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 519 -EVGVDVPNATVMVIEDAERF 538 (630)
T ss_pred -ecCcccCCCcEEEEeCCCcC
Confidence 34678889999999888764
No 498
>PRK09354 recA recombinase A; Provisional
Probab=70.61 E-value=24 Score=37.51 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=28.2
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa 358 (540)
.|+=+.+.+|+|||||...+..+.+.. . .+..|+||-.-..+-
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~-----------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K-----------AGGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-----------cCCcEEEECCccchH
Confidence 356788999999999976443333322 2 245688887766554
No 499
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=70.58 E-value=40 Score=37.80 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHH----HH---c-C----CcEEEEcCCCCCchhh
Q 009212 273 LGCSDYMIESLKRQNFLRPSQIQAMAFPP----VV---E-G----KSCILADQSGSGKTLA 321 (540)
Q Consensus 273 l~L~~~ll~~L~~~gf~~ptpiQ~~aip~----il---~-G----~dvlv~ApTGSGKTla 321 (540)
+|.+++.++.....|.-.-.+.-.+.+.. +. . . ..+++.+|.|||||..
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaL 554 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTAL 554 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHH
Confidence 57777777776666554433333333321 11 1 1 3799999999999953
No 500
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=70.54 E-value=61 Score=36.33 Aligned_cols=114 Identities=17% Similarity=0.262 Sum_probs=82.5
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---cC-CCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---QE-GVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~~-~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+-++||.+-|+-+|.++.+.+.++ ++++..++++...-+..+.+ +. ..||+|+ .++|+. .+++.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~G~~DvLVG-----INLLRE-GLDiP 513 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG-----INLLRE-GLDLP 513 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhcCCccEEEe-----ehhhhc-cCCCc
Confidence 4678999999999999999888876 47899999988765554433 33 4899999 466665 67788
Q ss_pred CccEEEEeCCcccCCCCCHHHH----HHHHHHhC-CCCCcEEEEeccCCHHHHHHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVA----LQSLISSS-PVTAQYLFVTATLPVEIYNKLVE 472 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~----i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~ 472 (540)
.+.++.|=+||. .||... |+.|=+.. +..-..|+..-.++..+...+..
T Consensus 514 EVsLVAIlDADK----eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 514 EVSLVAILDADK----EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDE 567 (663)
T ss_pred ceeEEEEeecCc----cccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHH
Confidence 999998888885 344443 33332222 33568888888888887766654
Done!