Query 009212
Match_columns 540
No_of_seqs 298 out of 2192
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 21:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 7.6E-40 2.6E-44 350.3 31.2 254 267-539 55-310 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 7.2E-37 2.5E-41 322.0 29.8 259 267-539 14-286 (417)
3 3fe2_A Probable ATP-dependent 100.0 2E-37 7E-42 305.6 21.9 211 267-483 28-238 (242)
4 2j0s_A ATP-dependent RNA helic 100.0 6.7E-37 2.3E-41 322.2 25.7 251 267-539 36-286 (410)
5 3fmo_B ATP-dependent RNA helic 100.0 5.9E-37 2E-41 313.2 20.5 207 264-482 88-297 (300)
6 1wrb_A DJVLGB; RNA helicase, D 100.0 9E-37 3.1E-41 302.4 19.7 227 267-495 22-252 (253)
7 1vec_A ATP-dependent RNA helic 100.0 5.7E-36 1.9E-40 286.5 24.3 203 268-480 3-205 (206)
8 3iuy_A Probable ATP-dependent 100.0 2.5E-36 8.5E-41 294.4 20.3 209 267-481 18-227 (228)
9 2oxc_A Probable ATP-dependent 100.0 1.7E-35 5.9E-40 289.6 22.2 204 267-481 23-227 (230)
10 3eiq_A Eukaryotic initiation f 100.0 4.7E-35 1.6E-39 307.5 26.6 250 268-539 40-290 (414)
11 3fht_A ATP-dependent RNA helic 100.0 4.6E-35 1.6E-39 307.0 25.6 253 264-539 21-276 (412)
12 3ber_A Probable ATP-dependent 100.0 4.9E-35 1.7E-39 290.7 24.4 204 267-481 42-246 (249)
13 1q0u_A Bstdead; DEAD protein, 100.0 6.6E-36 2.2E-40 289.9 17.6 206 268-483 4-212 (219)
14 1s2m_A Putative ATP-dependent 100.0 1.5E-34 5.1E-39 303.0 28.4 249 267-539 20-268 (400)
15 3fmp_B ATP-dependent RNA helic 100.0 1E-35 3.6E-40 321.0 19.9 254 264-540 88-344 (479)
16 1xti_A Probable ATP-dependent 100.0 1.3E-34 4.5E-39 301.8 26.4 251 268-539 8-260 (391)
17 3bor_A Human initiation factor 100.0 2.3E-35 7.8E-40 290.2 19.2 204 267-481 29-233 (237)
18 2pl3_A Probable ATP-dependent 100.0 2E-34 6.9E-39 282.3 24.6 208 267-482 24-232 (236)
19 2gxq_A Heat resistant RNA depe 100.0 1E-34 3.6E-39 277.6 21.5 203 269-481 2-204 (207)
20 3ly5_A ATP-dependent RNA helic 100.0 7.8E-35 2.7E-39 291.4 21.3 207 267-480 51-260 (262)
21 3pey_A ATP-dependent RNA helic 100.0 4.7E-34 1.6E-38 296.9 26.0 247 268-539 5-253 (395)
22 1qde_A EIF4A, translation init 100.0 1.7E-34 5.9E-39 280.0 21.1 204 268-483 14-217 (224)
23 1t6n_A Probable ATP-dependent 100.0 1.4E-34 4.6E-39 280.3 20.2 204 268-480 14-218 (220)
24 1fuu_A Yeast initiation factor 100.0 8.3E-35 2.8E-39 303.2 19.6 250 268-540 21-270 (394)
25 3dkp_A Probable ATP-dependent 100.0 8.4E-34 2.9E-38 279.5 19.6 206 268-482 25-240 (245)
26 1hv8_A Putative ATP-dependent 100.0 1.3E-32 4.6E-37 283.1 27.9 242 268-539 6-248 (367)
27 3sqw_A ATP-dependent RNA helic 100.0 1.3E-32 4.5E-37 304.4 24.0 258 269-539 18-298 (579)
28 3i5x_A ATP-dependent RNA helic 100.0 1.3E-32 4.5E-37 302.4 22.3 252 275-539 79-349 (563)
29 2z0m_A 337AA long hypothetical 100.0 2E-31 7E-36 271.4 26.3 230 275-539 1-230 (337)
30 3fho_A ATP-dependent RNA helic 100.0 7.7E-31 2.6E-35 286.2 17.1 247 269-540 120-368 (508)
31 3oiy_A Reverse gyrase helicase 100.0 9.9E-31 3.4E-35 276.5 12.6 226 278-539 9-262 (414)
32 2v1x_A ATP-dependent DNA helic 100.0 3.6E-28 1.2E-32 269.9 22.8 236 269-539 22-277 (591)
33 3l9o_A ATP-dependent RNA helic 100.0 8.6E-29 2.9E-33 291.7 17.8 191 268-483 162-354 (1108)
34 4ddu_A Reverse gyrase; topoiso 100.0 3.1E-28 1.1E-32 286.9 18.4 219 285-539 74-319 (1104)
35 2zj8_A DNA helicase, putative 100.0 5.8E-28 2E-32 273.8 18.9 189 269-476 2-191 (720)
36 1oyw_A RECQ helicase, ATP-depe 100.0 1.2E-27 4E-32 262.2 20.2 233 268-539 2-246 (523)
37 2va8_A SSO2462, SKI2-type heli 100.0 2.3E-27 7.7E-32 268.6 22.4 189 268-476 8-197 (715)
38 2p6r_A Afuhel308 helicase; pro 99.9 1.3E-27 4.3E-32 270.3 15.5 189 269-477 2-195 (702)
39 2ykg_A Probable ATP-dependent 99.9 1.1E-25 3.9E-30 253.0 24.3 176 280-463 3-184 (696)
40 4a2p_A RIG-I, retinoic acid in 99.9 1E-25 3.6E-30 245.2 23.2 168 287-463 4-177 (556)
41 3tbk_A RIG-I helicase domain; 99.9 1.5E-25 5.1E-30 243.4 23.9 167 290-464 4-176 (555)
42 1gku_B Reverse gyrase, TOP-RG; 99.9 2.3E-27 8E-32 278.9 9.5 219 281-539 48-285 (1054)
43 2xgj_A ATP-dependent RNA helic 99.9 3.7E-25 1.3E-29 258.7 23.5 187 284-498 81-269 (1010)
44 1tf5_A Preprotein translocase 99.9 5.9E-26 2E-30 256.1 15.4 162 285-464 79-288 (844)
45 4a2q_A RIG-I, retinoic acid in 99.9 4.1E-25 1.4E-29 253.3 22.1 170 286-463 244-418 (797)
46 4f92_B U5 small nuclear ribonu 99.9 1E-24 3.5E-29 265.8 24.9 241 275-539 911-1165(1724)
47 4f92_B U5 small nuclear ribonu 99.9 6.2E-25 2.1E-29 267.7 19.1 238 287-540 76-328 (1724)
48 4a4z_A Antiviral helicase SKI2 99.9 2.3E-24 8E-29 251.8 22.3 163 286-472 36-200 (997)
49 2fsf_A Preprotein translocase 99.9 6.7E-25 2.3E-29 247.0 14.8 148 286-451 71-240 (853)
50 1nkt_A Preprotein translocase 99.9 4.7E-24 1.6E-28 240.6 17.5 162 285-464 107-316 (922)
51 4a2w_A RIG-I, retinoic acid in 99.9 7.2E-24 2.5E-28 246.9 19.3 170 286-463 244-418 (936)
52 1wp9_A ATP-dependent RNA helic 99.9 1.7E-22 5.8E-27 213.6 24.9 159 290-463 9-167 (494)
53 3b6e_A Interferon-induced heli 99.9 4.7E-24 1.6E-28 204.1 10.9 167 286-461 29-216 (216)
54 3llm_A ATP-dependent RNA helic 99.9 1.5E-22 5.1E-27 198.8 15.5 182 276-477 47-230 (235)
55 4gl2_A Interferon-induced heli 99.9 7.5E-23 2.6E-27 230.2 14.8 167 290-464 7-193 (699)
56 1gm5_A RECG; helicase, replica 99.9 3E-22 1E-26 228.0 18.8 166 277-467 356-531 (780)
57 2eyq_A TRCF, transcription-rep 99.9 1.3E-20 4.4E-25 223.3 25.6 226 273-540 586-823 (1151)
58 2whx_A Serine protease/ntpase/ 99.8 2.9E-22 1E-26 223.4 3.7 170 270-466 151-322 (618)
59 2jlq_A Serine protease subunit 99.8 2.2E-21 7.6E-26 208.5 9.2 153 287-466 1-155 (451)
60 2xau_A PRE-mRNA-splicing facto 99.8 5.9E-20 2E-24 209.6 21.1 240 267-539 71-313 (773)
61 2oca_A DAR protein, ATP-depend 99.8 9E-21 3.1E-25 205.6 13.6 155 289-466 112-266 (510)
62 1rif_A DAR protein, DNA helica 99.8 1.5E-20 5.2E-25 189.1 13.5 154 289-465 112-265 (282)
63 2fwr_A DNA repair protein RAD2 99.8 3.8E-20 1.3E-24 198.8 17.3 136 290-463 93-229 (472)
64 3o8b_A HCV NS3 protease/helica 99.8 8.3E-21 2.8E-25 211.7 7.9 144 291-465 218-363 (666)
65 2wv9_A Flavivirin protease NS2 99.8 3.1E-22 1E-26 225.0 -6.7 158 283-466 203-377 (673)
66 1yks_A Genome polyprotein [con 99.8 5.8E-21 2E-25 204.8 -1.6 131 302-466 5-144 (440)
67 3h1t_A Type I site-specific re 99.8 8.8E-19 3E-23 193.9 13.4 171 289-478 177-357 (590)
68 2v6i_A RNA helicase; membrane, 99.8 2.2E-18 7.6E-23 184.2 13.8 136 304-465 1-137 (431)
69 2ipc_A Preprotein translocase 99.8 1.2E-18 4E-23 196.5 11.8 132 286-435 76-217 (997)
70 2fz4_A DNA repair protein RAD2 99.7 2.5E-17 8.5E-22 162.2 17.8 139 289-465 92-231 (237)
71 2z83_A Helicase/nucleoside tri 99.7 1.6E-18 5.4E-23 186.8 9.0 137 300-466 16-157 (459)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 5.9E-17 2E-21 189.3 14.7 166 277-464 251-440 (1038)
73 3crv_A XPD/RAD3 related DNA he 99.6 3.5E-15 1.2E-19 164.2 12.8 131 287-434 1-187 (551)
74 1z63_A Helicase of the SNF2/RA 99.6 9.9E-15 3.4E-19 157.7 14.8 148 289-462 36-187 (500)
75 3rc3_A ATP-dependent RNA helic 99.5 1.8E-14 6.1E-19 161.9 10.8 157 269-462 124-281 (677)
76 2vl7_A XPD; helicase, unknown 99.5 4.2E-14 1.4E-18 155.3 9.6 127 286-433 4-188 (540)
77 3dmq_A RNA polymerase-associat 99.5 9.5E-14 3.3E-18 162.2 12.8 155 289-462 152-316 (968)
78 3mwy_W Chromo domain-containin 99.4 2.7E-12 9.4E-17 147.1 16.4 163 289-470 235-417 (800)
79 3jux_A Protein translocase sub 99.3 8.3E-11 2.8E-15 130.9 18.2 130 286-433 72-258 (822)
80 4a15_A XPD helicase, ATP-depen 99.2 2.1E-11 7E-16 136.0 11.7 83 290-384 3-89 (620)
81 1z3i_X Similar to RAD54-like; 99.2 1.2E-10 4.1E-15 130.4 14.7 159 290-462 55-230 (644)
82 1w36_D RECD, exodeoxyribonucle 98.8 9.2E-09 3.1E-13 114.4 9.9 145 292-461 151-298 (608)
83 1c4o_A DNA nucleotide excision 98.5 6E-07 2.1E-11 100.8 14.0 68 287-370 6-78 (664)
84 2d7d_A Uvrabc system protein B 98.1 1.4E-05 4.7E-10 89.7 13.2 66 290-370 12-82 (661)
85 3e1s_A Exodeoxyribonuclease V, 97.8 0.00013 4.4E-09 80.5 12.6 126 290-460 189-314 (574)
86 3upu_A ATP-dependent DNA helic 97.7 0.00011 3.9E-09 78.5 11.2 135 284-459 19-162 (459)
87 2gk6_A Regulator of nonsense t 97.7 0.00027 9.1E-09 78.7 14.4 70 288-368 178-247 (624)
88 2xzl_A ATP-dependent helicase 97.7 0.00033 1.1E-08 80.1 15.4 70 288-368 358-427 (802)
89 4b3f_X DNA-binding protein smu 97.5 0.00014 4.9E-09 81.1 8.6 67 290-368 189-256 (646)
90 2wjy_A Regulator of nonsense t 97.5 0.00058 2E-08 78.1 13.6 69 289-368 355-423 (800)
91 2o0j_A Terminase, DNA packagin 96.9 0.004 1.4E-07 65.2 10.5 119 290-433 163-286 (385)
92 3cpe_A Terminase, DNA packagin 96.6 0.031 1.1E-06 61.5 15.5 143 290-459 163-311 (592)
93 3ec2_A DNA replication protein 96.4 0.018 6.2E-07 52.6 10.7 18 304-321 37-54 (180)
94 3vkw_A Replicase large subunit 95.6 0.021 7.2E-07 60.7 7.8 45 307-368 163-207 (446)
95 3te6_A Regulatory protein SIR3 95.6 0.13 4.4E-06 52.3 13.3 26 304-330 44-69 (318)
96 3bos_A Putative DNA replicatio 95.2 0.013 4.4E-07 55.3 4.3 18 304-321 51-68 (242)
97 3lfu_A DNA helicase II; SF1 he 95.0 0.036 1.2E-06 61.1 7.6 72 289-370 8-79 (647)
98 2chg_A Replication factor C sm 94.9 0.17 5.9E-06 46.3 11.1 40 419-460 101-140 (226)
99 1l8q_A Chromosomal replication 94.9 0.056 1.9E-06 54.3 8.1 17 305-321 37-53 (324)
100 2orw_A Thymidine kinase; TMTK, 94.8 0.033 1.1E-06 51.8 5.8 34 420-458 76-109 (184)
101 2kjq_A DNAA-related protein; s 94.8 0.035 1.2E-06 49.8 5.6 18 304-321 35-52 (149)
102 2z4s_A Chromosomal replication 94.4 0.14 4.7E-06 54.3 9.9 42 420-461 194-236 (440)
103 1uaa_A REP helicase, protein ( 94.1 0.055 1.9E-06 60.3 6.4 70 290-369 2-71 (673)
104 2b8t_A Thymidine kinase; deoxy 93.9 0.1 3.5E-06 50.3 7.0 114 304-460 11-124 (223)
105 2v1u_A Cell division control p 93.7 0.24 8.2E-06 50.0 9.8 19 304-322 43-61 (387)
106 3n70_A Transport activator; si 93.7 0.13 4.4E-06 45.4 6.8 21 302-322 21-41 (145)
107 1pjr_A PCRA; DNA repair, DNA r 93.6 0.089 3E-06 59.3 7.1 71 289-369 10-80 (724)
108 2zpa_A Uncharacterized protein 93.5 0.12 4.2E-06 57.5 7.6 112 290-462 175-288 (671)
109 3syl_A Protein CBBX; photosynt 93.3 0.15 5.3E-06 50.3 7.4 18 305-322 67-84 (309)
110 2p6n_A ATP-dependent RNA helic 93.3 0.071 2.4E-06 49.7 4.6 55 472-539 10-64 (191)
111 1iqp_A RFCS; clamp loader, ext 93.1 0.61 2.1E-05 45.9 11.6 39 419-459 109-147 (327)
112 1sxj_A Activator 1 95 kDa subu 93.1 0.41 1.4E-05 51.6 11.0 41 420-462 148-189 (516)
113 1njg_A DNA polymerase III subu 93.1 0.57 1.9E-05 43.2 10.7 38 420-459 126-163 (250)
114 2w58_A DNAI, primosome compone 92.9 0.28 9.6E-06 45.2 8.2 16 306-321 55-70 (202)
115 3u4q_A ATP-dependent helicase/ 92.8 0.085 2.9E-06 63.1 5.5 72 289-368 9-80 (1232)
116 1a5t_A Delta prime, HOLB; zinc 92.8 0.4 1.4E-05 48.5 9.7 33 291-323 3-42 (334)
117 1sxj_E Activator 1 40 kDa subu 92.4 0.62 2.1E-05 46.8 10.7 42 419-462 133-174 (354)
118 3h4m_A Proteasome-activating n 92.3 0.1 3.4E-06 51.1 4.4 51 268-321 14-67 (285)
119 1d2n_A N-ethylmaleimide-sensit 92.2 0.68 2.3E-05 44.9 10.3 17 306-322 65-81 (272)
120 3u61_B DNA polymerase accessor 92.1 1 3.5E-05 44.7 11.6 41 419-460 104-144 (324)
121 3pfi_A Holliday junction ATP-d 92.0 1.8 6.2E-05 43.1 13.5 42 268-321 26-71 (338)
122 1xwi_A SKD1 protein; VPS4B, AA 91.7 1.3 4.4E-05 44.5 12.0 48 268-321 9-61 (322)
123 1xx6_A Thymidine kinase; NESG, 91.5 0.71 2.4E-05 43.1 9.1 39 305-355 8-46 (191)
124 2qby_B CDC6 homolog 3, cell di 91.4 0.36 1.2E-05 49.0 7.5 18 305-322 45-62 (384)
125 3kl4_A SRP54, signal recogniti 91.2 0.6 2.1E-05 49.4 9.2 50 419-468 178-229 (433)
126 2qby_A CDC6 homolog 1, cell di 91.2 0.44 1.5E-05 48.0 7.9 18 305-322 45-62 (386)
127 1fnn_A CDC6P, cell division co 90.8 0.27 9.1E-06 49.9 5.9 16 307-322 46-61 (389)
128 3vfd_A Spastin; ATPase, microt 90.8 1.6 5.5E-05 44.8 11.9 45 268-322 112-165 (389)
129 1hqc_A RUVB; extended AAA-ATPa 90.7 2.3 7.7E-05 41.9 12.5 45 268-321 9-54 (324)
130 2p65_A Hypothetical protein PF 90.7 0.39 1.3E-05 42.8 6.2 18 305-322 43-60 (187)
131 1w4r_A Thymidine kinase; type 90.4 0.49 1.7E-05 44.6 6.8 39 304-354 19-57 (195)
132 2qgz_A Helicase loader, putati 90.3 0.61 2.1E-05 46.8 7.9 18 305-322 152-169 (308)
133 2hjv_A ATP-dependent RNA helic 90.2 1.7 5.8E-05 38.7 10.1 73 345-428 35-111 (163)
134 1sxj_D Activator 1 41 kDa subu 89.9 0.9 3.1E-05 45.3 8.8 38 420-459 133-170 (353)
135 3eie_A Vacuolar protein sortin 89.9 2.4 8.2E-05 42.3 12.0 50 267-322 14-68 (322)
136 1sxj_C Activator 1 40 kDa subu 89.6 2.6 8.8E-05 42.3 12.0 39 419-459 109-147 (340)
137 2j9r_A Thymidine kinase; TK1, 89.2 0.94 3.2E-05 43.3 7.8 40 305-356 28-67 (214)
138 2w0m_A SSO2452; RECA, SSPF, un 89.1 0.97 3.3E-05 41.9 7.8 19 304-322 22-40 (235)
139 2zan_A Vacuolar protein sortin 89.0 2 6.8E-05 45.2 11.0 52 267-321 130-183 (444)
140 1fuk_A Eukaryotic initiation f 88.7 2.9 9.9E-05 37.2 10.5 73 345-428 30-106 (165)
141 3e2i_A Thymidine kinase; Zn-bi 88.7 1.1 3.7E-05 43.0 7.8 99 304-446 27-125 (219)
142 2p6n_A ATP-dependent RNA helic 88.5 2.4 8.1E-05 39.2 10.0 71 345-426 54-128 (191)
143 1t5i_A C_terminal domain of A 88.3 2.8 9.6E-05 37.8 10.2 85 345-445 31-119 (172)
144 2rb4_A ATP-dependent RNA helic 88.0 2.3 8E-05 38.2 9.5 73 345-428 34-110 (175)
145 1jr3_A DNA polymerase III subu 87.9 4.5 0.00016 40.4 12.5 39 419-459 118-156 (373)
146 2dr3_A UPF0273 protein PH0284; 87.6 1.3 4.5E-05 41.5 7.8 52 304-368 22-73 (247)
147 3dm5_A SRP54, signal recogniti 87.4 4.4 0.00015 42.8 12.4 48 420-467 182-229 (443)
148 1sxj_B Activator 1 37 kDa subu 87.1 2.3 7.8E-05 41.6 9.5 38 420-459 107-144 (323)
149 2chq_A Replication factor C sm 86.8 1 3.6E-05 44.0 6.8 41 268-321 14-54 (319)
150 3t15_A Ribulose bisphosphate c 86.4 0.83 2.9E-05 45.2 5.9 16 306-321 37-52 (293)
151 2orv_A Thymidine kinase; TP4A 86.4 2.6 8.7E-05 40.8 9.0 41 304-356 18-58 (234)
152 1w5s_A Origin recognition comp 86.4 1.1 3.8E-05 45.6 7.0 18 305-322 50-69 (412)
153 3eaq_A Heat resistant RNA depe 86.0 3.6 0.00012 38.5 9.8 71 345-426 31-105 (212)
154 2qp9_X Vacuolar protein sortin 85.7 2 6.8E-05 43.8 8.4 49 268-322 48-101 (355)
155 3hu3_A Transitional endoplasmi 85.0 6.2 0.00021 42.2 12.2 53 268-322 201-255 (489)
156 2q6t_A DNAB replication FORK h 85.0 2.1 7.3E-05 44.9 8.5 111 304-433 199-323 (444)
157 3i5x_A ATP-dependent RNA helic 84.9 6.3 0.00021 42.1 12.3 78 344-429 338-419 (563)
158 2ehv_A Hypothetical protein PH 84.1 1.1 3.8E-05 42.2 5.3 46 419-465 134-184 (251)
159 2iut_A DNA translocase FTSK; n 83.2 2.3 7.8E-05 46.5 7.9 24 305-328 214-237 (574)
160 1xp8_A RECA protein, recombina 83.2 2.9 9.9E-05 43.0 8.3 27 304-331 73-99 (366)
161 2gno_A DNA polymerase III, gam 82.7 5.7 0.00019 39.6 10.1 51 419-472 81-131 (305)
162 3sqw_A ATP-dependent RNA helic 82.5 8.8 0.0003 41.4 12.4 78 344-429 287-368 (579)
163 3pvs_A Replication-associated 82.4 3.1 0.00011 44.0 8.4 16 306-321 51-66 (447)
164 2r6a_A DNAB helicase, replicat 82.1 3.2 0.00011 43.7 8.3 26 304-330 202-227 (454)
165 2jgn_A DBX, DDX3, ATP-dependen 81.6 2.5 8.7E-05 38.6 6.5 72 344-426 45-120 (185)
166 1n0w_A DNA repair protein RAD5 81.5 4 0.00014 38.1 8.1 21 304-324 23-43 (243)
167 3hr8_A Protein RECA; alpha and 81.4 2.5 8.6E-05 43.4 7.0 40 304-355 60-99 (356)
168 2zr9_A Protein RECA, recombina 80.6 1.9 6.5E-05 44.0 5.8 19 304-322 60-78 (349)
169 2cvh_A DNA repair and recombin 80.3 9.9 0.00034 34.7 10.3 20 304-323 19-38 (220)
170 3m6a_A ATP-dependent protease 80.3 2.3 7.9E-05 46.0 6.6 18 304-321 107-124 (543)
171 2i4i_A ATP-dependent RNA helic 79.5 7.9 0.00027 39.1 10.1 72 344-426 275-350 (417)
172 3cmu_A Protein RECA, recombina 79.2 4.5 0.00015 50.5 9.3 45 299-355 1415-1465(2050)
173 2px0_A Flagellar biosynthesis 78.9 6.2 0.00021 39.1 8.8 18 305-322 105-122 (296)
174 3hjh_A Transcription-repair-co 78.7 4.8 0.00017 43.0 8.4 52 304-370 13-64 (483)
175 3co5_A Putative two-component 78.1 1.4 4.7E-05 38.5 3.3 21 301-321 23-43 (143)
176 3pxi_A Negative regulator of g 78.1 3.7 0.00013 46.1 7.7 26 421-448 580-605 (758)
177 3pey_A ATP-dependent RNA helic 77.4 37 0.0013 33.5 14.3 91 344-445 242-337 (395)
178 1g5t_A COB(I)alamin adenosyltr 76.2 8.2 0.00028 36.2 8.2 35 306-352 29-63 (196)
179 3i32_A Heat resistant RNA depe 76.2 8.6 0.00029 38.2 8.9 71 345-426 28-102 (300)
180 1cr0_A DNA primase/helicase; R 75.7 3 0.0001 40.9 5.3 20 303-322 33-52 (296)
181 1hv8_A Putative ATP-dependent 75.7 7.8 0.00027 38.1 8.6 73 344-427 237-313 (367)
182 1wp9_A ATP-dependent RNA helic 75.6 12 0.00041 38.0 10.2 74 344-428 360-445 (494)
183 2oca_A DAR protein, ATP-depend 75.3 19 0.00066 37.7 11.9 92 345-448 347-442 (510)
184 3fht_A ATP-dependent RNA helic 74.3 9.4 0.00032 38.4 8.9 73 345-428 266-342 (412)
185 1xti_A Probable ATP-dependent 74.1 27 0.00094 34.6 12.3 86 344-445 249-338 (391)
186 2eyq_A TRCF, transcription-rep 73.4 5.1 0.00017 47.5 7.4 80 344-432 811-894 (1151)
187 1e9r_A Conjugal transfer prote 73.2 3.2 0.00011 43.2 5.1 26 304-330 52-77 (437)
188 2d7d_A Uvrabc system protein B 73.2 15 0.00052 40.6 10.9 91 345-446 445-539 (661)
189 1c4o_A DNA nucleotide excision 70.9 14 0.00049 40.8 9.9 90 345-445 439-532 (664)
190 1s2m_A Putative ATP-dependent 70.3 20 0.0007 35.9 10.3 71 345-426 258-332 (400)
191 2z43_A DNA repair and recombin 69.2 8.7 0.0003 38.3 7.1 58 305-368 107-165 (324)
192 2db3_A ATP-dependent RNA helic 68.7 14 0.00049 38.1 8.9 69 347-426 302-374 (434)
193 3bh0_A DNAB-like replicative h 68.3 20 0.00069 35.5 9.5 51 304-367 67-117 (315)
194 2j0s_A ATP-dependent RNA helic 68.1 15 0.00051 37.1 8.8 70 346-426 277-350 (410)
195 2v1x_A ATP-dependent DNA helic 67.8 12 0.00042 40.8 8.4 72 344-426 266-341 (591)
196 3b9p_A CG5977-PA, isoform A; A 67.4 5.9 0.0002 38.5 5.3 44 268-321 18-70 (297)
197 3cmw_A Protein RECA, recombina 66.9 8.3 0.00028 47.4 7.4 122 306-466 1432-1571(1706)
198 1qvr_A CLPB protein; coiled co 66.2 15 0.00051 41.9 9.1 17 305-321 191-207 (854)
199 3cf0_A Transitional endoplasmi 65.9 5.2 0.00018 39.4 4.6 51 268-321 12-65 (301)
200 1oyw_A RECQ helicase, ATP-depe 65.8 15 0.00053 39.2 8.6 85 345-445 236-324 (523)
201 2l8b_A Protein TRAI, DNA helic 63.9 5.8 0.0002 37.0 4.1 61 291-362 35-97 (189)
202 3bgw_A DNAB-like replicative h 63.7 4.5 0.00016 42.6 3.8 26 304-330 196-221 (444)
203 2yjt_D ATP-dependent RNA helic 67.5 1.5 5E-05 39.5 0.0 71 345-426 30-104 (170)
204 2qz4_A Paraplegin; AAA+, SPG7, 63.3 2.5 8.4E-05 40.2 1.5 51 268-321 3-55 (262)
205 4a1f_A DNAB helicase, replicat 63.2 3.6 0.00012 41.9 2.9 49 304-365 45-93 (338)
206 4b4t_M 26S protease regulatory 62.8 7.3 0.00025 41.0 5.2 53 266-321 176-231 (434)
207 2v6i_A RNA helicase; membrane, 62.6 9.3 0.00032 39.8 6.0 67 345-424 171-238 (431)
208 1yks_A Genome polyprotein [con 61.6 9.5 0.00033 39.8 5.9 68 345-425 177-245 (440)
209 1u94_A RECA protein, recombina 60.1 8.5 0.00029 39.3 5.0 20 304-323 62-81 (356)
210 2i1q_A DNA repair and recombin 59.4 12 0.0004 37.1 5.8 18 305-322 98-115 (322)
211 3nwn_A Kinesin-like protein KI 59.1 5.4 0.00018 41.0 3.3 25 298-322 96-122 (359)
212 3io5_A Recombination and repai 59.0 17 0.00059 36.8 6.9 90 307-433 30-124 (333)
213 2oap_1 GSPE-2, type II secreti 59.0 6.8 0.00023 42.1 4.2 37 283-321 239-276 (511)
214 1lv7_A FTSH; alpha/beta domain 58.9 10 0.00035 35.9 5.1 51 268-321 9-61 (257)
215 1jbk_A CLPB protein; beta barr 58.5 6.8 0.00023 34.3 3.6 17 305-321 43-59 (195)
216 3hws_A ATP-dependent CLP prote 58.3 10 0.00034 38.3 5.2 19 304-322 50-68 (363)
217 3uk6_A RUVB-like 2; hexameric 57.5 6.4 0.00022 39.4 3.5 44 267-322 40-87 (368)
218 1vma_A Cell division protein F 56.9 1.3E+02 0.0043 29.7 13.0 17 305-321 104-120 (306)
219 1bg2_A Kinesin; motor protein, 56.8 6.4 0.00022 39.8 3.4 25 298-322 69-95 (325)
220 1ofh_A ATP-dependent HSL prote 56.4 17 0.00057 35.1 6.3 18 304-321 49-66 (310)
221 2bjv_A PSP operon transcriptio 56.4 6.1 0.00021 37.8 3.0 19 303-321 27-45 (265)
222 2z0m_A 337AA long hypothetical 56.4 24 0.00083 34.1 7.5 70 344-428 219-292 (337)
223 3nbx_X ATPase RAVA; AAA+ ATPas 56.3 11 0.00039 40.3 5.4 42 279-321 16-57 (500)
224 2zts_A Putative uncharacterize 56.1 9.9 0.00034 35.4 4.4 53 304-368 29-81 (251)
225 3jvv_A Twitching mobility prot 55.4 6.6 0.00022 40.2 3.2 19 303-321 121-139 (356)
226 1u0j_A DNA replication protein 54.9 20 0.00067 35.2 6.4 44 277-323 73-122 (267)
227 2zfi_A Kinesin-like protein KI 54.6 7.2 0.00025 40.1 3.4 25 298-322 81-107 (366)
228 3cmu_A Protein RECA, recombina 54.5 16 0.00054 45.7 6.8 122 304-462 1080-1217(2050)
229 2vvg_A Kinesin-2; motor protei 54.4 7.4 0.00025 39.8 3.4 25 298-322 81-107 (350)
230 3tbk_A RIG-I helicase domain; 54.3 32 0.0011 35.9 8.5 75 345-426 389-476 (555)
231 3b85_A Phosphate starvation-in 54.3 12 0.00043 34.9 4.7 31 291-321 8-38 (208)
232 2h58_A Kinesin-like protein KI 54.2 7.5 0.00026 39.4 3.4 26 297-322 71-98 (330)
233 3dc4_A Kinesin-like protein NO 54.1 7.1 0.00024 39.8 3.1 25 298-322 86-112 (344)
234 1x88_A Kinesin-like protein KI 54.0 7 0.00024 40.1 3.1 25 298-322 80-106 (359)
235 2nr8_A Kinesin-like protein KI 53.9 7.4 0.00025 39.9 3.3 26 297-322 94-121 (358)
236 4etp_A Kinesin-like protein KA 53.8 8 0.00027 40.3 3.6 25 298-322 132-158 (403)
237 4ag6_A VIRB4 ATPase, type IV s 53.8 10 0.00035 38.7 4.4 43 420-462 262-307 (392)
238 3b6u_A Kinesin-like protein KI 53.6 7.5 0.00025 40.1 3.3 25 298-322 93-119 (372)
239 3gbj_A KIF13B protein; kinesin 53.6 7.4 0.00025 39.8 3.2 25 298-322 84-110 (354)
240 2xau_A PRE-mRNA-splicing facto 53.6 26 0.0009 39.5 8.1 76 345-426 303-393 (773)
241 1t5c_A CENP-E protein, centrom 53.6 7.5 0.00026 39.7 3.3 25 298-322 69-95 (349)
242 1v8k_A Kinesin-like protein KI 53.5 7.6 0.00026 40.6 3.4 25 298-322 146-172 (410)
243 4a14_A Kinesin, kinesin-like p 53.1 8.3 0.00028 39.2 3.5 25 298-322 75-101 (344)
244 2y65_A Kinesin, kinesin heavy 53.0 8.3 0.00029 39.6 3.5 25 298-322 76-102 (365)
245 1goj_A Kinesin, kinesin heavy 52.8 7.6 0.00026 39.8 3.1 24 299-322 73-98 (355)
246 2ffh_A Protein (FFH); SRP54, s 52.6 82 0.0028 32.8 11.2 18 305-322 98-115 (425)
247 2wv9_A Flavivirin protease NS2 52.6 17 0.00057 40.4 6.1 68 345-425 410-478 (673)
248 3lre_A Kinesin-like protein KI 52.3 7.7 0.00026 39.7 3.1 25 298-322 97-123 (355)
249 2yhs_A FTSY, cell division pro 52.2 29 0.00099 37.2 7.6 16 306-321 294-309 (503)
250 2wbe_C Bipolar kinesin KRP-130 52.0 7.5 0.00026 40.1 3.0 25 298-322 92-118 (373)
251 3cob_A Kinesin heavy chain-lik 51.9 7.1 0.00024 40.2 2.8 25 298-322 71-97 (369)
252 2r44_A Uncharacterized protein 51.7 5.4 0.00018 39.5 1.8 24 298-321 39-62 (331)
253 2c9o_A RUVB-like 1; hexameric 51.3 10 0.00034 39.8 3.9 44 267-322 33-80 (456)
254 1ls1_A Signal recognition part 51.2 1.1E+02 0.0036 30.0 11.3 51 420-470 180-230 (295)
255 2owm_A Nckin3-434, related to 51.0 8.8 0.0003 40.5 3.4 26 297-322 127-154 (443)
256 3u06_A Protein claret segregat 50.8 8.1 0.00028 40.4 3.0 26 297-322 129-156 (412)
257 3t0q_A AGR253WP; kinesin, alph 50.4 7.2 0.00025 39.8 2.6 25 298-322 77-103 (349)
258 2v3c_C SRP54, signal recogniti 50.2 11 0.00039 39.4 4.1 18 306-323 100-117 (432)
259 4b4t_J 26S protease regulatory 49.9 4.9 0.00017 42.0 1.2 53 266-321 143-198 (405)
260 2heh_A KIF2C protein; kinesin, 49.8 9.6 0.00033 39.5 3.4 26 298-323 126-153 (387)
261 3d8b_A Fidgetin-like protein 1 49.7 12 0.00041 37.8 4.1 45 268-322 81-134 (357)
262 3dmq_A RNA polymerase-associat 49.5 30 0.001 40.0 7.9 88 344-446 502-595 (968)
263 3bfn_A Kinesin-like protein KI 48.4 7.6 0.00026 40.3 2.4 23 300-322 92-116 (388)
264 1w36_B RECB, exodeoxyribonucle 48.2 15 0.00052 43.5 5.2 62 307-368 18-79 (1180)
265 1ixz_A ATP-dependent metallopr 48.2 16 0.00054 34.5 4.5 50 267-321 12-65 (254)
266 1kgd_A CASK, peripheral plasma 48.0 6.5 0.00022 35.4 1.6 19 303-321 3-21 (180)
267 1f9v_A Kinesin-like protein KA 47.7 7.6 0.00026 39.6 2.2 25 298-322 76-102 (347)
268 3e70_C DPA, signal recognition 47.7 2.2E+02 0.0076 28.2 14.8 53 421-473 212-264 (328)
269 1p9r_A General secretion pathw 47.3 14 0.00049 38.5 4.3 18 304-321 166-183 (418)
270 2r62_A Cell division protease 47.0 5.2 0.00018 38.2 0.8 18 305-322 44-61 (268)
271 1tue_A Replication protein E1; 47.0 21 0.00071 33.8 4.9 44 277-322 28-75 (212)
272 2gza_A Type IV secretion syste 46.8 10 0.00035 38.5 3.1 21 301-321 171-191 (361)
273 4b4t_I 26S protease regulatory 46.5 24 0.00081 37.2 5.7 53 266-321 177-232 (437)
274 4b4t_H 26S protease regulatory 46.4 4.7 0.00016 42.9 0.4 53 266-321 204-259 (467)
275 4b4t_L 26S protease subunit RP 46.4 4.2 0.00015 42.9 0.0 53 266-321 176-231 (437)
276 4b4t_K 26S protease regulatory 46.3 19 0.00065 37.7 5.1 53 266-321 167-222 (428)
277 2j37_W Signal recognition part 46.3 87 0.003 33.4 10.3 16 307-322 103-118 (504)
278 1q57_A DNA primase/helicase; d 45.9 32 0.0011 36.3 6.9 50 304-365 241-290 (503)
279 2whx_A Serine protease/ntpase/ 45.9 40 0.0014 36.9 7.8 67 345-424 355-422 (618)
280 1ojl_A Transcriptional regulat 45.7 10 0.00035 37.5 2.7 18 304-321 24-41 (304)
281 2pt7_A CAG-ALFA; ATPase, prote 45.6 8 0.00027 38.9 2.0 19 302-320 168-186 (330)
282 1ry6_A Internal kinesin; kines 45.4 11 0.00039 38.5 3.1 19 304-322 82-102 (360)
283 2jlq_A Serine protease subunit 45.4 26 0.0009 36.4 6.0 67 346-425 189-256 (451)
284 1lvg_A Guanylate kinase, GMP k 45.0 8.1 0.00028 35.5 1.7 18 304-321 3-20 (198)
285 2rep_A Kinesin-like protein KI 44.9 8.5 0.00029 39.7 2.1 25 298-322 107-133 (376)
286 3vaa_A Shikimate kinase, SK; s 44.6 8.8 0.0003 35.0 2.0 20 303-322 23-42 (199)
287 3rc3_A ATP-dependent RNA helic 43.8 57 0.0019 36.2 8.7 74 347-432 322-401 (677)
288 2x8a_A Nuclear valosin-contain 43.8 2.8 9.5E-05 41.1 -1.8 52 267-321 6-60 (274)
289 3o8b_A HCV NS3 protease/helica 42.9 34 0.0012 37.9 6.7 67 344-425 395-461 (666)
290 4gl2_A Interferon-induced heli 42.7 15 0.00051 40.3 3.8 76 345-426 400-488 (699)
291 3trf_A Shikimate kinase, SK; a 41.5 11 0.00037 33.6 2.0 18 305-322 5-22 (185)
292 3iij_A Coilin-interacting nucl 41.0 7.1 0.00024 34.8 0.7 20 303-322 9-28 (180)
293 2qor_A Guanylate kinase; phosp 40.6 8.4 0.00029 35.3 1.1 20 302-321 9-28 (204)
294 2eyu_A Twitching motility prot 40.5 12 0.0004 36.4 2.2 20 302-321 22-41 (261)
295 1qhx_A CPT, protein (chloramph 40.4 11 0.00037 33.3 1.8 17 305-321 3-19 (178)
296 1iy2_A ATP-dependent metallopr 40.0 25 0.00085 33.8 4.5 52 267-321 36-89 (278)
297 3kta_B Chromosome segregation 40.0 19 0.00064 32.7 3.4 40 420-460 86-125 (173)
298 3tau_A Guanylate kinase, GMP k 39.9 11 0.00038 34.8 1.8 18 304-321 7-24 (208)
299 4a2p_A RIG-I, retinoic acid in 39.7 44 0.0015 34.9 6.7 78 344-428 389-479 (556)
300 3a8t_A Adenylate isopentenyltr 39.1 11 0.00036 38.5 1.6 18 305-322 40-57 (339)
301 3exa_A TRNA delta(2)-isopenten 39.0 11 0.00038 38.0 1.7 17 306-322 4-20 (322)
302 4akg_A Glutathione S-transfera 38.7 24 0.00081 45.5 5.0 46 277-323 892-941 (2695)
303 3foz_A TRNA delta(2)-isopenten 38.7 11 0.00038 37.9 1.7 16 307-322 12-27 (316)
304 2j41_A Guanylate kinase; GMP, 38.4 13 0.00044 33.6 2.0 19 303-321 4-22 (207)
305 4fcw_A Chaperone protein CLPB; 38.1 14 0.00048 35.8 2.4 17 306-322 48-64 (311)
306 3oiy_A Reverse gyrase helicase 37.9 39 0.0013 34.2 5.8 85 346-447 253-344 (414)
307 3u4q_B ATP-dependent helicase/ 37.7 21 0.00071 42.2 4.1 39 309-356 5-43 (1166)
308 2z83_A Helicase/nucleoside tri 37.6 28 0.00094 36.4 4.7 68 345-425 190-258 (459)
309 3lw7_A Adenylate kinase relate 37.5 12 0.00042 32.3 1.7 15 307-321 3-17 (179)
310 1um8_A ATP-dependent CLP prote 37.2 13 0.00045 37.6 2.0 18 305-322 72-89 (376)
311 1g8p_A Magnesium-chelatase 38 37.0 17 0.00059 35.8 2.9 18 304-321 44-61 (350)
312 1y63_A LMAJ004144AAA protein; 37.0 14 0.00048 33.2 2.0 18 304-321 9-26 (184)
313 3vkg_A Dynein heavy chain, cyt 36.4 25 0.00084 46.0 4.6 48 275-323 873-924 (3245)
314 1kag_A SKI, shikimate kinase I 36.3 15 0.0005 32.2 2.0 17 305-321 4-20 (173)
315 1z6g_A Guanylate kinase; struc 36.2 14 0.0005 34.3 2.0 20 302-321 20-39 (218)
316 3euj_A Chromosome partition pr 36.1 25 0.00085 37.5 4.0 37 419-459 413-449 (483)
317 1zp6_A Hypothetical protein AT 36.0 12 0.0004 33.5 1.3 19 303-321 7-25 (191)
318 2ze6_A Isopentenyl transferase 35.5 13 0.00045 35.6 1.6 16 307-322 3-18 (253)
319 1kht_A Adenylate kinase; phosp 35.5 15 0.00051 32.6 1.9 18 304-321 2-19 (192)
320 2ykg_A Probable ATP-dependent 35.2 30 0.001 37.8 4.7 79 344-429 397-488 (696)
321 3ney_A 55 kDa erythrocyte memb 35.1 14 0.00047 34.5 1.6 19 303-321 17-35 (197)
322 2ius_A DNA translocase FTSK; n 35.0 20 0.0007 38.4 3.2 20 304-323 166-185 (512)
323 3eiq_A Eukaryotic initiation f 34.8 30 0.001 34.7 4.3 71 345-426 280-354 (414)
324 2qmh_A HPR kinase/phosphorylas 34.6 15 0.0005 34.7 1.7 17 305-321 34-50 (205)
325 1ex7_A Guanylate kinase; subst 34.6 15 0.0005 33.9 1.7 16 306-321 2-17 (186)
326 3tr0_A Guanylate kinase, GMP k 34.4 18 0.00061 32.6 2.3 18 304-321 6-23 (205)
327 2xxa_A Signal recognition part 34.4 1.9E+02 0.0063 30.1 10.4 17 306-322 101-117 (433)
328 1s96_A Guanylate kinase, GMP k 34.3 16 0.00054 34.4 2.0 20 302-321 13-32 (219)
329 4h1g_A Maltose binding protein 34.2 23 0.00078 39.5 3.5 26 297-322 453-480 (715)
330 3h1t_A Type I site-specific re 33.9 75 0.0026 34.0 7.5 80 344-429 438-526 (590)
331 2ewv_A Twitching motility prot 33.3 17 0.00057 37.2 2.0 19 303-321 134-152 (372)
332 4a2q_A RIG-I, retinoic acid in 33.2 66 0.0023 36.0 7.2 79 344-429 630-721 (797)
333 3a00_A Guanylate kinase, GMP k 33.1 18 0.0006 32.6 2.0 16 306-321 2-17 (186)
334 4eun_A Thermoresistant glucoki 33.0 17 0.00059 33.0 2.0 18 304-321 28-45 (200)
335 3fmp_B ATP-dependent RNA helic 32.9 9.2 0.00031 39.9 0.0 70 345-425 333-406 (479)
336 2ce7_A Cell division protein F 32.7 12 0.00042 39.7 1.0 50 268-322 13-66 (476)
337 3crv_A XPD/RAD3 related DNA he 32.6 1.6E+02 0.0053 31.4 9.7 24 450-475 312-336 (551)
338 1knq_A Gluconate kinase; ALFA/ 32.2 15 0.00052 32.3 1.4 17 305-321 8-24 (175)
339 1ly1_A Polynucleotide kinase; 32.0 17 0.00057 31.9 1.6 15 307-321 4-18 (181)
340 1z5z_A Helicase of the SNF2/RA 31.7 1.1E+02 0.0039 29.3 7.8 75 345-429 112-192 (271)
341 1znw_A Guanylate kinase, GMP k 31.7 19 0.00065 33.0 2.0 21 301-321 16-36 (207)
342 3kb2_A SPBC2 prophage-derived 31.4 18 0.00061 31.4 1.7 15 307-321 3-17 (173)
343 4gp7_A Metallophosphoesterase; 31.3 16 0.00055 32.5 1.4 20 304-323 8-27 (171)
344 3cm0_A Adenylate kinase; ATP-b 30.6 14 0.00049 32.7 0.9 18 304-321 3-20 (186)
345 2r2a_A Uncharacterized protein 30.5 25 0.00086 32.6 2.6 53 421-474 88-144 (199)
346 1cn3_F Fragment of coat protei 30.4 16 0.00056 22.5 0.8 17 63-79 1-17 (29)
347 2va8_A SSO2462, SKI2-type heli 30.4 1.5E+02 0.005 32.6 9.3 76 345-426 252-362 (715)
348 3pxg_A Negative regulator of g 30.0 28 0.00094 36.6 3.1 18 305-322 201-218 (468)
349 2r2a_A Uncharacterized protein 29.8 24 0.00082 32.7 2.3 16 307-322 7-22 (199)
350 3nwj_A ATSK2; P loop, shikimat 29.8 26 0.0009 33.7 2.7 21 302-322 45-65 (250)
351 3crm_A TRNA delta(2)-isopenten 29.6 19 0.00066 36.2 1.7 16 307-322 7-22 (323)
352 1gku_B Reverse gyrase, TOP-RG; 29.5 60 0.0021 37.9 6.2 73 345-430 275-352 (1054)
353 3d3q_A TRNA delta(2)-isopenten 29.1 20 0.00069 36.4 1.8 16 307-322 9-24 (340)
354 3f9v_A Minichromosome maintena 29.0 19 0.00064 39.4 1.6 15 307-321 329-343 (595)
355 3lnc_A Guanylate kinase, GMP k 28.6 21 0.00073 33.1 1.8 18 304-321 26-43 (231)
356 3eph_A TRNA isopentenyltransfe 28.5 20 0.00067 37.4 1.6 14 308-321 5-18 (409)
357 3kta_A Chromosome segregation 28.4 20 0.00069 31.7 1.5 15 307-321 28-42 (182)
358 1f2t_A RAD50 ABC-ATPase; DNA d 28.4 21 0.00073 31.2 1.6 15 307-321 25-39 (149)
359 2fhz_B Colicin-E5; protein-pro 27.8 31 0.0011 28.5 2.3 27 75-101 66-92 (108)
360 4anj_A Unconventional myosin-V 27.7 61 0.0021 37.9 5.7 65 266-331 96-169 (1052)
361 3k1j_A LON protease, ATP-depen 27.5 37 0.0013 36.8 3.7 21 301-321 56-76 (604)
362 2i3b_A HCR-ntpase, human cance 27.2 57 0.0019 29.7 4.4 43 418-463 103-146 (189)
363 3uie_A Adenylyl-sulfate kinase 27.1 22 0.00074 32.3 1.5 18 304-321 24-41 (200)
364 1j8m_F SRP54, signal recogniti 27.1 1.8E+02 0.0061 28.4 8.4 17 306-322 99-115 (297)
365 3fho_A ATP-dependent RNA helic 26.9 16 0.00054 38.7 0.6 72 345-427 357-432 (508)
366 2c95_A Adenylate kinase 1; tra 26.8 26 0.0009 31.1 2.0 20 302-321 6-25 (196)
367 1tf5_A Preprotein translocase 26.7 1.5E+02 0.0053 33.6 8.6 54 346-404 433-488 (844)
368 1xjc_A MOBB protein homolog; s 26.7 57 0.002 29.4 4.2 15 307-321 6-20 (169)
369 2bdt_A BH3686; alpha-beta prot 26.4 19 0.00064 32.2 0.9 17 306-322 3-19 (189)
370 3t61_A Gluconokinase; PSI-biol 26.3 24 0.00082 31.9 1.6 16 306-321 19-34 (202)
371 1gvn_B Zeta; postsegregational 26.2 25 0.00085 34.4 1.8 16 306-321 34-49 (287)
372 3c8u_A Fructokinase; YP_612366 26.1 23 0.0008 32.4 1.6 18 304-321 21-38 (208)
373 1in4_A RUVB, holliday junction 25.9 31 0.0011 34.2 2.5 16 306-321 52-67 (334)
374 1tev_A UMP-CMP kinase; ploop, 25.8 23 0.00078 31.4 1.4 18 305-322 3-20 (196)
375 4a15_A XPD helicase, ATP-depen 25.6 1E+02 0.0034 33.7 6.7 23 516-539 436-458 (620)
376 1tf7_A KAIC; homohexamer, hexa 25.6 2.5E+02 0.0086 29.5 9.8 123 304-460 280-414 (525)
377 1m7g_A Adenylylsulfate kinase; 25.5 28 0.00096 31.9 1.9 29 292-321 13-41 (211)
378 4a74_A DNA repair and recombin 25.3 29 0.00098 31.7 2.0 19 304-322 24-42 (231)
379 1zuh_A Shikimate kinase; alpha 25.3 28 0.00094 30.4 1.8 17 306-322 8-24 (168)
380 3pxi_A Negative regulator of g 25.2 40 0.0014 37.7 3.5 18 305-322 201-218 (758)
381 3qf7_A RAD50; ABC-ATPase, ATPa 25.0 25 0.00086 35.7 1.6 16 307-322 25-40 (365)
382 1nlf_A Regulatory protein REPA 24.9 34 0.0011 32.9 2.5 23 302-324 27-49 (279)
383 2rhm_A Putative kinase; P-loop 24.8 25 0.00086 31.2 1.5 17 305-321 5-21 (193)
384 3tif_A Uncharacterized ABC tra 24.4 29 0.00098 32.9 1.8 41 418-459 161-202 (235)
385 2v54_A DTMP kinase, thymidylat 24.3 32 0.0011 30.9 2.1 18 304-321 3-20 (204)
386 1jr3_D DNA polymerase III, del 24.2 90 0.0031 30.7 5.6 56 404-462 61-117 (343)
387 1g8x_A Myosin II heavy chain f 24.2 56 0.0019 38.1 4.5 58 266-323 125-190 (1010)
388 1np6_A Molybdopterin-guanine d 24.1 42 0.0014 30.3 2.9 15 307-321 8-22 (174)
389 1z5z_A Helicase of the SNF2/RA 24.1 38 0.0013 32.8 2.7 26 514-539 95-122 (271)
390 1via_A Shikimate kinase; struc 24.0 30 0.001 30.4 1.8 16 306-321 5-20 (175)
391 3auy_A DNA double-strand break 23.9 26 0.0009 35.5 1.5 15 308-322 28-42 (371)
392 4akg_A Glutathione S-transfera 23.8 28 0.00097 44.8 2.1 21 302-322 1264-1284(2695)
393 2bwj_A Adenylate kinase 5; pho 23.7 32 0.0011 30.7 1.9 18 304-321 11-28 (199)
394 1g41_A Heat shock protein HSLU 23.6 29 0.001 36.5 1.9 18 305-322 50-67 (444)
395 3co5_A Putative two-component 23.4 3.3E+02 0.011 22.8 8.8 39 422-462 77-116 (143)
396 1ye8_A Protein THEP1, hypothet 23.3 34 0.0012 30.8 2.0 29 419-448 98-128 (178)
397 2pez_A Bifunctional 3'-phospho 23.2 28 0.00097 30.7 1.5 18 304-321 4-21 (179)
398 2plr_A DTMP kinase, probable t 23.1 25 0.00085 31.6 1.1 18 304-321 3-20 (213)
399 2zj8_A DNA helicase, putative 23.0 1.9E+02 0.0065 31.7 8.5 78 345-429 237-346 (720)
400 1fuu_A Yeast initiation factor 22.9 18 0.00061 36.0 0.0 71 345-426 259-333 (394)
401 1nks_A Adenylate kinase; therm 22.9 28 0.00097 30.7 1.4 15 307-321 3-17 (194)
402 3o38_A Short chain dehydrogena 22.9 3.7E+02 0.013 24.8 9.6 82 303-405 20-110 (266)
403 2iyv_A Shikimate kinase, SK; t 22.7 36 0.0012 30.0 2.1 17 306-322 3-19 (184)
404 1nij_A Hypothetical protein YJ 22.6 72 0.0025 31.4 4.5 37 420-460 151-187 (318)
405 3asz_A Uridine kinase; cytidin 22.5 29 0.00099 31.5 1.4 18 304-321 5-22 (211)
406 1aky_A Adenylate kinase; ATP:A 22.4 34 0.0012 31.4 1.9 17 305-321 4-20 (220)
407 2i9o_A MHB8A peptide; beta-hai 22.3 34 0.0012 22.2 1.2 10 62-71 12-21 (37)
408 1e6c_A Shikimate kinase; phosp 22.1 36 0.0012 29.5 1.9 16 306-321 3-18 (173)
409 3fb4_A Adenylate kinase; psych 22.0 33 0.0011 31.2 1.7 15 307-321 2-16 (216)
410 1zd8_A GTP:AMP phosphotransfer 21.9 35 0.0012 31.5 1.9 18 304-321 6-23 (227)
411 2r8r_A Sensor protein; KDPD, P 21.9 72 0.0025 30.4 4.1 21 304-324 4-25 (228)
412 1qf9_A UMP/CMP kinase, protein 21.8 33 0.0011 30.2 1.6 15 307-321 8-22 (194)
413 1zak_A Adenylate kinase; ATP:A 21.8 35 0.0012 31.3 1.9 17 305-321 5-21 (222)
414 2v26_A Myosin VI; calmodulin-b 21.8 83 0.0028 35.5 5.2 64 266-330 92-164 (784)
415 1ak2_A Adenylate kinase isoenz 21.5 33 0.0011 32.0 1.6 18 304-321 15-32 (233)
416 2yvu_A Probable adenylyl-sulfa 21.5 32 0.0011 30.6 1.5 19 304-322 12-30 (186)
417 4a2w_A RIG-I, retinoic acid in 21.5 1E+02 0.0035 35.3 6.0 80 343-429 629-721 (936)
418 3mm4_A Histidine kinase homolo 21.5 4.2E+02 0.015 23.4 15.0 137 301-466 16-166 (206)
419 2cbz_A Multidrug resistance-as 21.4 36 0.0012 32.2 1.8 26 420-446 145-170 (237)
420 3bs4_A Uncharacterized protein 21.3 65 0.0022 31.2 3.7 53 304-369 20-72 (260)
421 4fn4_A Short chain dehydrogena 21.1 2.8E+02 0.0096 26.4 8.3 81 303-405 5-93 (254)
422 2if2_A Dephospho-COA kinase; a 20.9 34 0.0012 30.8 1.5 15 307-321 3-17 (204)
423 1cke_A CK, MSSA, protein (cyti 20.8 39 0.0013 30.9 1.9 17 306-322 6-22 (227)
424 3dl0_A Adenylate kinase; phosp 20.7 37 0.0013 30.9 1.7 15 307-321 2-16 (216)
425 2vli_A Antibiotic resistance p 20.7 36 0.0012 29.9 1.6 18 304-321 4-21 (183)
426 3qks_A DNA double-strand break 20.7 36 0.0012 31.3 1.6 15 307-321 25-39 (203)
427 2cdn_A Adenylate kinase; phosp 20.4 42 0.0014 30.2 2.1 17 305-321 20-36 (201)
428 2jaq_A Deoxyguanosine kinase; 20.3 35 0.0012 30.4 1.5 15 307-321 2-16 (205)
429 2ycu_A Non muscle myosin 2C, a 20.3 58 0.002 37.9 3.6 65 266-331 99-171 (995)
430 2pze_A Cystic fibrosis transme 20.2 39 0.0013 31.8 1.8 41 419-461 147-188 (229)
431 2qt1_A Nicotinamide riboside k 20.2 38 0.0013 30.7 1.7 19 303-321 19-37 (207)
432 2pcj_A ABC transporter, lipopr 20.1 38 0.0013 31.7 1.7 42 418-460 156-197 (224)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.6e-40 Score=350.34 Aligned_cols=254 Identities=27% Similarity=0.451 Sum_probs=225.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||.+|||+|+++||.++.|+|++++||||||||++|++|+++++..... .....++
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~----~~~~~~~ 130 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH----ELELGRP 130 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC----CCCTTCC
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc----ccccCCc
Confidence 468999999999999999999999999999999999999999999999999999999999999876421 1234578
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+|||+||.|+++.+++++.. ..+++.+++||.....+...+..+++|+|+||++|.+++.++...+.++++|||
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFE-SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTT-SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 9999999999999999999999863 568899999999999888888899999999999999999988888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhC--CCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSS--PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQE 504 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l--~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~ 504 (540)
||||+|+ +++|...+..|+..+ +..+|+++||||+|.++..++..++.++..+..........++.|.++.+..
T Consensus 210 DEah~~~-~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~--- 285 (434)
T 2db3_A 210 DEADRML-DMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK--- 285 (434)
T ss_dssp ETHHHHT-STTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG---
T ss_pred ccHhhhh-ccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc---
Confidence 9999999 889999999999885 5689999999999999999999999888776655555667788888888764
Q ss_pred CCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 505 SDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 505 ~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|.+++..... ++||||+|+
T Consensus 286 ---------~~k~~~l~~~l~~~~~-~~lVF~~t~ 310 (434)
T 2db3_A 286 ---------YAKRSKLIEILSEQAD-GTIVFVETK 310 (434)
T ss_dssp ---------GGHHHHHHHHHHHCCT-TEEEECSSH
T ss_pred ---------HHHHHHHHHHHHhCCC-CEEEEEeCc
Confidence 3588889999988764 499999986
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=321.98 Aligned_cols=259 Identities=27% Similarity=0.442 Sum_probs=219.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhh---------c
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQ---------G 337 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~---------~ 337 (540)
..+|++++|++.++++|..+||..|+|+|+++|+.++.|+|++++||||||||++|++|+++.+...... .
T Consensus 14 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 3579999999999999999999999999999999999999999999999999999999999988754210 0
Q ss_pred cCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcccc
Q 009212 338 LSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQ 417 (540)
Q Consensus 338 ~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~ 417 (540)
.......++++|||+||++|+.|+++.+++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+.
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~ 172 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYR-SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIG 172 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBC
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCc-CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcC
Confidence 0011234578999999999999999999998763 578899999999998888888889999999999999999988888
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhC--CC--CCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCce
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSS--PV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLE 493 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l--~~--~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~ 493 (540)
+..+++|||||||+++ +.+|...+..++... +. .+|++++|||++..+..++..++.++..+..........++.
T Consensus 173 ~~~~~~iViDEah~~~-~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (417)
T 2i4i_A 173 LDFCKYLVLDEADRML-DMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251 (417)
T ss_dssp CTTCCEEEESSHHHHH-HTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE
T ss_pred hhhCcEEEEEChhHhh-ccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce
Confidence 9999999999999999 788999999998853 32 579999999999999988888998887766555556677788
Q ss_pred eEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhC-CCCcEEEEeccc
Q 009212 494 EFLVDCSGDQESDKTPETAFLNKKSALLQLIEKS-PVSKTIVFCNKK 539 (540)
Q Consensus 494 q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~-~~~rtIIFcnSr 539 (540)
+.++.+.. ..|...|.++++.. ...++||||+++
T Consensus 252 ~~~~~~~~------------~~~~~~l~~~l~~~~~~~~~lVf~~~~ 286 (417)
T 2i4i_A 252 QKVVWVEE------------SDKRSFLLDLLNATGKDSLTLVFVETK 286 (417)
T ss_dssp EEEEECCG------------GGHHHHHHHHHHTCCTTCEEEEECSSH
T ss_pred EEEEEecc------------HhHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 88887764 35788899999876 467899999986
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2e-37 Score=305.57 Aligned_cols=211 Identities=30% Similarity=0.473 Sum_probs=192.4
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|.+++|++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|++.++..... .....++
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~----~~~~~~~ 103 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF----LERGDGP 103 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC----CCTTCCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc----cccCCCC
Confidence 368999999999999999999999999999999999999999999999999999999999998865321 1234578
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||++|+.|+++.++.++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+...+.++++|||
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 8999999999999999999998774 578999999999998888888888999999999999999988888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~ 483 (540)
||||+|+ +++|...+..+++.++..+|+++||||+|+++.+++..++.++..+...
T Consensus 183 DEah~l~-~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 183 DEADRML-DMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp TTHHHHH-HTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHh-hhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999 7899999999999999999999999999999999999999988776543
No 4
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.7e-37 Score=322.25 Aligned_cols=251 Identities=25% Similarity=0.432 Sum_probs=223.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||.+|+|+|+++|+.++.|+|+++++|||+|||++|++|+++.+.. ...++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~ 106 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---------QVRET 106 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---------TSCSC
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh---------ccCCc
Confidence 457999999999999999999999999999999999999999999999999999999999987632 13467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||++|+.|+++.++.++.. .++.+..++|+.....+...+..+++|+|+||++|.+++..+...+..+++|||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDY-MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 8999999999999999999999864 678899999999998888888888999999999999999988888899999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||+++ +.+|...+..++..++...|++++|||++.++.+++..++.++..+...........+.++++.+...
T Consensus 186 DEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 260 (410)
T 2j0s_A 186 DEADEML-NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE---- 260 (410)
T ss_dssp ETHHHHT-STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST----
T ss_pred ccHHHHH-hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH----
Confidence 9999999 78999999999999999999999999999999888888888887776665556667788888877653
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++......++||||+++
T Consensus 261 -------~~k~~~l~~~~~~~~~~~~lVf~~~~ 286 (410)
T 2j0s_A 261 -------EWKFDTLCDLYDTLTITQAVIFCNTK 286 (410)
T ss_dssp -------THHHHHHHHHHHHHTSSEEEEECSSH
T ss_pred -------HhHHHHHHHHHHhcCCCcEEEEEcCH
Confidence 35788899999887778999999986
No 5
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=313.21 Aligned_cols=207 Identities=24% Similarity=0.365 Sum_probs=184.2
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCC
Q 009212 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (540)
Q Consensus 264 ~~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~ 341 (540)
..+..+|++++|++.++++|..+||..||++|.++||.++.| +|++++||||||||+||++|+++++...
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-------- 159 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--------
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--------
Confidence 345678999999999999999999999999999999999998 9999999999999999999999887432
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh-ccccCCC
Q 009212 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLIN 420 (540)
Q Consensus 342 ~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~-~~~~l~~ 420 (540)
..++++|||+|||+||.|+++.++.++.+...+.+..++|+...... ...+++|+|+||++|++++.+ +.+.+.+
T Consensus 160 -~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred -CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 45779999999999999999999999876557889999988765432 245689999999999999966 5677899
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeC
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~ 482 (540)
+++|||||||+|++..+|...+..|+..++..+|+++||||+|.++..++..++.++.++..
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 99999999999993378999999999999999999999999999999999999999887653
No 6
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=9e-37 Score=302.38 Aligned_cols=227 Identities=32% Similarity=0.496 Sum_probs=188.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+..............++
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 46799999999999999999999999999999999999999999999999999999999999887542111111123467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||++|+.|+++.++.++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+...+.++++||+
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLN-TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTT-SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 9999999999999999999998763 568899999999988888888889999999999999999988888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhC--CC--CCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeE
Q 009212 427 DEVDILFNDEDFEVALQSLISSS--PV--TAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEF 495 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l--~~--~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~ 495 (540)
||||+|+ +.+|...+..++..+ +. .+|+++||||+++++.+++..++.++..+..........+|+|+
T Consensus 181 DEah~~~-~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 181 DEADRML-DMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp ETHHHHH-HTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred eCHHHHH-hCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999 789999999999954 43 68999999999999999999999988877655555555666664
No 7
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.7e-36 Score=286.49 Aligned_cols=203 Identities=28% Similarity=0.478 Sum_probs=186.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++++|+++++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~---------~~~~~ 73 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK---------KDNIQ 73 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc---------CCCee
Confidence 479999999999999999999999999999999999999999999999999999999999876422 34678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+||++||++|+.|+++.++.+.....++.+..++|+.....+...+..+++|+|+||++|.+++.++...+.++++||+|
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 99999999999999999999987533688999999999888888888889999999999999999888889999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEE
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i 480 (540)
|||++. +.+|...+..++..++..+|++++|||+|.++.+++..++.++..+
T Consensus 154 Eah~~~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 154 EADKLL-SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHT-STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ChHHhH-hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999 6789999999999999899999999999999999999999887654
No 8
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=294.39 Aligned_cols=209 Identities=29% Similarity=0.515 Sum_probs=181.0
Q ss_pred cccccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 267 RKSFKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 267 ~~~F~~-l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
..+|.+ +++++.++++|.++||.+|+++|.++|+.++.|+|++++||||||||++|++|++..+...... .....+
T Consensus 18 ~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~---~~~~~~ 94 (228)
T 3iuy_A 18 TCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS---REQRNG 94 (228)
T ss_dssp CCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------------CC
T ss_pred hhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch---hhccCC
Confidence 357999 8999999999999999999999999999999999999999999999999999999987543211 122467
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEE
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LV 425 (540)
+++|||+||++||.|+++.++.+.. .++++..++|+.....+...+.++++|+|+||++|.+++..+...+.++++||
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 8899999999999999999999864 56889999999988888888888899999999999999998888899999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEe
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~ 481 (540)
|||||+++ +.+|...+..++..++..+|++++|||+|+++.+++..++.++..+.
T Consensus 173 iDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKML-DMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHH-HTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHh-ccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999 78999999999999999999999999999999999999999887654
No 9
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.7e-35 Score=289.58 Aligned_cols=204 Identities=31% Similarity=0.385 Sum_probs=183.5
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+... ..++
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~---------~~~~ 93 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE---------NLST 93 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------SCSC
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCc
Confidence 4679999999999999999999999999999999999999999999999999999999999877432 3467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||++|+.|+++.++.++....++++..++|+.....+...+. +++|+|+||++|.+++..+.+.+.++++||+
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 899999999999999999999976434788999999988877766654 6999999999999999888888899999999
Q ss_pred eCCcccCCCCC-HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEe
Q 009212 427 DEVDILFNDED-FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (540)
Q Consensus 427 DEad~ll~d~~-f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~ 481 (540)
||||+++ +.+ |...+..+++.++..+|+++||||+|+++.+++..++.++..+.
T Consensus 173 DEah~~~-~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 173 DEADKLL-EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp SSHHHHH-STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred CCchHhh-cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999 666 99999999999998999999999999999999988888887654
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=307.47 Aligned_cols=250 Identities=22% Similarity=0.415 Sum_probs=223.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|+++++++.+++.|.+.||..|+++|+++|+.++.|+|+++++|||+|||++|++|+++.+... ..+.+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~~~ 110 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD---------LKATQ 110 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT---------SCSCC
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc---------CCcee
Confidence 579999999999999999999999999999999999999999999999999999999999876432 24678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
+||++||++|+.|+++.++.++.. .++.+..++|+.....+...+. .+++|+|+||++|.+++..+...+..+++|||
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGG-SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhcc-cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 999999999999999999999864 5678889999988887777766 67899999999999999988888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||++. +.+|...+..++..++...|++++|||++..+...+..++.++..+...........+.++++.+...
T Consensus 190 DEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 264 (414)
T 3eiq_A 190 DEADEML-SRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE---- 264 (414)
T ss_dssp CSHHHHH-HTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS----
T ss_pred ECHHHhh-ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH----
Confidence 9999998 78899999999999999999999999999999998888888888877666666777788888877653
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++.....+++||||+++
T Consensus 265 -------~~~~~~l~~~~~~~~~~~~lvf~~~~ 290 (414)
T 3eiq_A 265 -------EWKLDTLCDLYETLTITQAVIFINTR 290 (414)
T ss_dssp -------TTHHHHHHHHHHSSCCSSCEEECSCH
T ss_pred -------HhHHHHHHHHHHhCCCCcEEEEeCCH
Confidence 35888999999998888999999986
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.6e-35 Score=306.99 Aligned_cols=253 Identities=23% Similarity=0.370 Sum_probs=218.6
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCC
Q 009212 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (540)
Q Consensus 264 ~~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~ 341 (540)
..+..+|++++|++.++++|.++||..|+|+|.++|+.++.+ +|+++++|||+|||++|++|+++.+...
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-------- 92 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 92 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--------
Confidence 445678999999999999999999999999999999999987 9999999999999999999999876432
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh-ccccCCC
Q 009212 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLIN 420 (540)
Q Consensus 342 ~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~-~~~~l~~ 420 (540)
..++++|||+||++|+.|+++.++++......+.+....++...... ....++|+|+||++|.+++.. +.+.+.+
T Consensus 93 -~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 93 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred -CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 34678999999999999999999999875456888888887765432 234579999999999999865 5667889
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcC
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~ 500 (540)
+++|||||||+++.+.++...+..+...++..+|++++|||++..+..++..++.++..+...........+.+.++.+.
T Consensus 169 ~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (412)
T 3fht_A 169 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 248 (412)
T ss_dssp CCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECS
T ss_pred CcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcC
Confidence 99999999999984478999999999999999999999999999999999999999888877766677778888888776
Q ss_pred CCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.. ..+...|..++.....+++||||+++
T Consensus 249 ~~-----------~~~~~~l~~~~~~~~~~~~lvf~~~~ 276 (412)
T 3fht_A 249 SR-----------DEKFQALCNLYGAITIAQAMIFCHTR 276 (412)
T ss_dssp SH-----------HHHHHHHHHHHHHHSSSEEEEECSSH
T ss_pred Ch-----------HHHHHHHHHHHhhcCCCCEEEEeCCH
Confidence 52 46888899998887778999999986
No 12
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=290.73 Aligned_cols=204 Identities=26% Similarity=0.447 Sum_probs=186.8
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+... ..++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~---------~~~~ 112 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET---------PQRL 112 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---------CCSS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC---------CCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999988653 2467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh-ccccCCCccEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLINLRCAI 425 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~-~~~~l~~i~~LV 425 (540)
++|||+||++|+.|+++.++.++.. .++++..++|+.....+...+..+++|+|+||++|.+++.. +.+.+..+++||
T Consensus 113 ~~lil~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 113 FALVLTPTRELAFQISEQFEALGSS-IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLV 191 (249)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHGG-GTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcc-CCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEE
Confidence 8999999999999999999998763 56889999999988888788888899999999999999876 456789999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEe
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~ 481 (540)
|||||+++ +.+|...+..++..++..+|+++||||++.++.+++..++.++..+.
T Consensus 192 iDEah~l~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 192 MDEADRIL-NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp ECSHHHHH-HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred EcChhhhh-ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEE
Confidence 99999999 77999999999999998999999999999999999999999887764
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=6.6e-36 Score=289.91 Aligned_cols=206 Identities=28% Similarity=0.472 Sum_probs=185.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++++|++.++++|.++||.+|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~---------~~~~~ 74 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE---------RAEVQ 74 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT---------SCSCC
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC---------cCCce
Confidence 579999999999999999999999999999999999999999999999999999999999886432 34678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCC---CceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGV---PFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~---~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~L 424 (540)
+|||+||++|+.|+++.++++..... .+.+..++|+.....+...+..+++|+|+||++|.+++..+...+..+++|
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 99999999999999999999876321 578889999988776666666789999999999999999888888999999
Q ss_pred EEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCC
Q 009212 425 ILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 425 VlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~ 483 (540)
|+||||++. +.+|...+..++..++..+|++++|||+|.++.+++..++.++..+...
T Consensus 155 ViDEah~~~-~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 155 VVDEADLML-DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EECSHHHHH-HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEcCchHHh-hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 999999999 7889999999999999899999999999999999999999998876543
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-34 Score=303.00 Aligned_cols=249 Identities=26% Similarity=0.436 Sum_probs=217.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+... ..++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~---------~~~~ 90 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK---------LNKI 90 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT---------SCSC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc---------cCCc
Confidence 3579999999999999999999999999999999999999999999999999999999999876421 2466
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++||++|+++|+.|+++.++.++.. .++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++|||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 91 QALIMVPTRELALQTSQVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 8999999999999999999998763 578899999999888887777788999999999999999888888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||++. +.+|...+..++..++...|++++|||+|..+..++...+..+..+... ......++.+++..+..
T Consensus 170 DEaH~~~-~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----- 242 (400)
T 1s2m_A 170 DEADKML-SRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEE----- 242 (400)
T ss_dssp ESHHHHS-SHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC-SSCBCTTEEEEEEECCG-----
T ss_pred eCchHhh-hhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEec-cccccCCceeEEEEech-----
Confidence 9999998 6789999999999998899999999999999999999998877665433 22345567777776654
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++.....+++||||+++
T Consensus 243 -------~~k~~~l~~~~~~~~~~~~lVf~~~~ 268 (400)
T 1s2m_A 243 -------RQKLHCLNTLFSKLQINQAIIFCNST 268 (400)
T ss_dssp -------GGHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred -------hhHHHHHHHHHhhcCCCcEEEEEecH
Confidence 35788899999888888999999986
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=321.02 Aligned_cols=254 Identities=23% Similarity=0.369 Sum_probs=182.0
Q ss_pred ccccccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCC
Q 009212 264 FFSRKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKS 341 (540)
Q Consensus 264 ~~~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~ 341 (540)
..+..+|.+++|++.++++|.++||..|+|+|.++|+.++.| +|++++||||||||++|++|+++.+...
T Consensus 88 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-------- 159 (479)
T 3fmp_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-------- 159 (479)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--------
T ss_pred ccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--------
Confidence 345678999999999999999999999999999999999987 9999999999999999999999876432
Q ss_pred CCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh-ccccCCC
Q 009212 342 TSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE-GILQLIN 420 (540)
Q Consensus 342 ~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~-~~~~l~~ 420 (540)
..++++|||+||++|+.|+++.++.+..+...+.+..+.++...... ...+++|+|+||++|.+++.+ +.+.+.+
T Consensus 160 -~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 160 -NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp -SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred -CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 34678999999999999999999999876567888888887765432 134579999999999999865 5667889
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcC
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCS 500 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~ 500 (540)
+++|||||||+|+...+|...+..+...++..+|++++|||++..+..++...++++..+...........+.|.++.+.
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 315 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS 315 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeC
Confidence 99999999999984468999999999999999999999999999999999999999888776666666677888888776
Q ss_pred CCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 501 GDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 501 ~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
.. ..+...|..++......++||||+++.
T Consensus 316 ~~-----------~~~~~~l~~~~~~~~~~~~lvF~~s~~ 344 (479)
T 3fmp_B 316 SR-----------DEKFQALCNLYGAITIAQAMIFCHTRK 344 (479)
T ss_dssp ----------------------------------------
T ss_pred CH-----------HHHHHHHHHHHhhccCCceEEEeCcHH
Confidence 53 357778888888777789999999874
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-34 Score=301.82 Aligned_cols=251 Identities=24% Similarity=0.384 Sum_probs=216.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++++|++.++++|.++||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++..+.. ...+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---------~~~~~~ 78 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 78 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---------cCCCee
Confidence 46999999999999999999999999999999999999999999999999999999999987632 134678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
+||++||++|+.|+++.++++.....++++..++|+.....+...+.. .++|+|+||++|..++......+.++++||+
T Consensus 79 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 79 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 999999999999999999999875447899999999887777666654 4799999999999999888888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCC-ccccCCCceeEEEEcCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPG-MHRISPGLEEFLVDCSGDQES 505 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~-~~~~~~~I~q~~v~~~~~~~~ 505 (540)
||||++.+..++...+..++...+...|++++|||++..+...+..++.++..+.... .......+.++++.+..
T Consensus 159 DEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 234 (391)
T 1xti_A 159 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD---- 234 (391)
T ss_dssp CSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG----
T ss_pred eCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc----
Confidence 9999998435788999999999998999999999999999888889998877665443 33444567777777654
Q ss_pred CCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 506 ~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..|...|..++.....+++||||+++
T Consensus 235 --------~~~~~~l~~~l~~~~~~~~lvf~~~~ 260 (391)
T 1xti_A 235 --------NEKNRKLFDLLDVLEFNQVVIFVKSV 260 (391)
T ss_dssp --------GGHHHHHHHHHHHSCCSEEEEECSCH
T ss_pred --------hhHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 35788889999888888999999986
No 17
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.3e-35 Score=290.23 Aligned_cols=204 Identities=23% Similarity=0.416 Sum_probs=175.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|++++|++.++++|.++||..|+++|.++|+.++.|+|+++++|||||||++|++|+++.+... ..++
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~---------~~~~ 99 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE---------FKET 99 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------SCSC
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc---------CCCc
Confidence 3679999999999999999999999999999999999999999999999999999999999876421 3467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCC-CcEEEeChHHHHHHHHhccccCCCccEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAI 425 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~-~dIlVaTP~rL~~ll~~~~~~l~~i~~LV 425 (540)
++|||+||++|+.|+++.++.++.. .++.+..++|+.....+...+..+ ++|+|+||++|.+++..+...+..+++||
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 100 QALVLAPTRELAQQIQKVILALGDY-MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHHhhh-cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 8999999999999999999998764 567888899998877777777665 89999999999999998888899999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEe
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~ 481 (540)
|||||+++ +.+|...+..+++.++..+|++++|||+|+++.+++..++.++..+.
T Consensus 179 iDEah~~~-~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 179 LDEADEML-SRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRIL 233 (237)
T ss_dssp EESHHHHH-HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC
T ss_pred ECCchHhh-ccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEE
Confidence 99999998 78899999999999999999999999999999999999999887764
No 18
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=282.31 Aligned_cols=208 Identities=26% Similarity=0.417 Sum_probs=183.2
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
..+|+++++++.++++|.+.||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+..... ....++
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-----~~~~~~ 98 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-----TSTDGL 98 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-----CGGGCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-----cccCCc
Confidence 467999999999999999999999999999999999999999999999999999999999998875321 123467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-cccCCCccEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRCAI 425 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~LV 425 (540)
++||++||++|+.|+++.++.++.. .++.+..++|+.....+...+ .+++|+|+||++|.+++... ...+.++++||
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKN-HDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTT-SSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCC-CCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 8999999999999999999998763 568899999998877766665 46899999999999988765 46788999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeC
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~ 482 (540)
+||||+++ +.+|...+..++..++..+|+++||||+++.+.+++..++.++..+..
T Consensus 177 iDEah~~~-~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~ 232 (236)
T 2pl3_A 177 LDEADRIL-DMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWV 232 (236)
T ss_dssp ETTHHHHH-HTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEEC
T ss_pred EeChHHHh-cCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEe
Confidence 99999999 789999999999999999999999999999999988888888877653
No 19
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1e-34 Score=277.56 Aligned_cols=203 Identities=33% Similarity=0.530 Sum_probs=184.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~a 348 (540)
+|++++|++.++++|.+.||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... .....++++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~------~~~~~~~~~ 75 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS------QERGRKPRA 75 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC------CCTTCCCSE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhc------cccCCCCcE
Confidence 59999999999999999999999999999999999999999999999999999999999887532 112457889
Q ss_pred EEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 349 LIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
||++||++|+.|+++.++.+.. .+++..++|+.....+...+..+++|+|+||+++.+++..+...+.++++||+||
T Consensus 76 lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 76 LVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp EEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred EEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 9999999999999999999864 3788899999988777777777899999999999999998888899999999999
Q ss_pred CcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEe
Q 009212 429 VDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVM 481 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~ 481 (540)
||++. +.+|...+..++..++..+|++++|||+|+.+.+++..++.++.++.
T Consensus 153 ah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 153 ADEML-SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp HHHHH-HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred hhHhh-ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 99998 77899999999999999999999999999999999999998887653
No 20
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=291.36 Aligned_cols=207 Identities=26% Similarity=0.452 Sum_probs=181.4
Q ss_pred cccccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCC
Q 009212 267 RKSFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSG 344 (540)
Q Consensus 267 ~~~F~~l~--L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~ 344 (540)
..+|.+++ +++.++++|+++||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+..... ....
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-----~~~~ 125 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-----MPRN 125 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-----CGGG
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-----cccC
Confidence 35688887 9999999999999999999999999999999999999999999999999999999876321 1224
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc-cccCCCccE
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG-ILQLINLRC 423 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~ 423 (540)
++++|||+||++||.|+++.+++++.. ..+.+..++|+.....+...+..+++|+|+||++|.+++... ...+.++++
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTT-CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh-cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 678999999999999999999999874 567889999999988888888888999999999999988765 467889999
Q ss_pred EEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEE
Q 009212 424 AILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (540)
Q Consensus 424 LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i 480 (540)
|||||||+|+ +++|...+..|++.++..+|+++||||+|.++.+++...+.+...+
T Consensus 205 lViDEah~l~-~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~~ 260 (262)
T 3ly5_A 205 LVIDEADRIL-DVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLY 260 (262)
T ss_dssp EEECSHHHHH-HTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCEE
T ss_pred EEEcChHHHh-hhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCee
Confidence 9999999999 7899999999999999999999999999999999998888765443
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.7e-34 Score=296.86 Aligned_cols=247 Identities=25% Similarity=0.425 Sum_probs=214.0
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
.+|++++|++.++++|.+.||..|+|+|.++++.++.+ +|+++++|||+|||++|++|++..+... ..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~---------~~~ 75 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE---------DAS 75 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT---------CCS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC---------CCC
Confidence 58999999999999999999999999999999999998 9999999999999999999999876432 356
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEE
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LV 425 (540)
+++|||+|+++|+.|+++.+++++.. ..+.+...+++..... ...+++|+|+||++|.+++.+....+.++++||
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 150 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKF-TKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFV 150 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEE
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcc-cCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEE
Confidence 78999999999999999999998764 5677778877754332 123689999999999999988888899999999
Q ss_pred EeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCC
Q 009212 426 LDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQES 505 (540)
Q Consensus 426 lDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~ 505 (540)
+||||++..+.++...+..+...++...|++++|||+++.+..++...+.++..+...........+.+.+..+...
T Consensus 151 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 227 (395)
T 3pey_A 151 LDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNE--- 227 (395)
T ss_dssp EETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSH---
T ss_pred EEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCch---
Confidence 99999998447899999999999999999999999999999999999998887776665566667778888776542
Q ss_pred CCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 506 DKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 506 ~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..+...|..++.....+++||||+++
T Consensus 228 --------~~~~~~l~~~~~~~~~~~~lvf~~~~ 253 (395)
T 3pey_A 228 --------ADKFDVLTELYGLMTIGSSIIFVATK 253 (395)
T ss_dssp --------HHHHHHHHHHHTTTTSSEEEEECSCH
T ss_pred --------HHHHHHHHHHHHhccCCCEEEEeCCH
Confidence 46788888888888888999999986
No 22
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.7e-34 Score=280.02 Aligned_cols=204 Identities=24% Similarity=0.416 Sum_probs=176.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++++|++.+++.|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~---------~~~~~ 84 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQ 84 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT---------CCSCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc---------CCCce
Confidence 579999999999999999999999999999999999999999999999999999999999887432 34678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+||++|+++|+.|+++.++.++.. .++++..++|+.....+...+.. ++|+|+||++|.+++.++...+.++++||+|
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViD 162 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 162 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEc
Confidence 999999999999999999998763 57888999999887776666654 8999999999999999888889999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~ 483 (540)
|||++. +.+|...+..++..++..+|++++|||+++++.+++..++.++..+...
T Consensus 163 Eah~~~-~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 163 EADEML-SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp THHHHH-HTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred ChhHHh-hhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999998 7889999999999999999999999999999999999999988776543
No 23
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-34 Score=280.29 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=182.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++++|++.++++|.++||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+.. ...+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~---------~~~~~~ 84 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---------VTGQVS 84 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---------CTTCCC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc---------cCCCEE
Confidence 57999999999999999999999999999999999999999999999999999999999987632 124568
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
+||++||++|+.|+++.++++.....++++..++|+.....+...+.. .++|+|+||++|..++..+...+.++++||+
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 999999999999999999999775347889999999887777666654 4799999999999999988888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEE
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVV 480 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i 480 (540)
||||+++++.+|...+..++..++..+|++++|||++.++.+++..++.++..+
T Consensus 165 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 165 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp ESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred cCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 999999843589999999999999899999999999999999998899888765
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.3e-35 Score=303.22 Aligned_cols=250 Identities=24% Similarity=0.418 Sum_probs=183.7
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.+|++++|++.++++|...||..|+|+|+++++.++.|+|+++++|||+|||++|++|+++.+... ..+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~---------~~~~~ 91 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS---------VKAPQ 91 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT---------CCSCC
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc---------CCCCC
Confidence 579999999999999999999999999999999999999999999999999999999999876432 34678
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+||++|+++|+.|+++.++++... .++++..++|+.....+...+. +++|+|+||++|.+.+..+...+.++++||+|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 999999999999999999998763 5788999999988776665554 58999999999999998888888999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDK 507 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~ 507 (540)
|||++. +.+|...+..++..++...|++++|||++..+.+.+..++.++..+...........+.++++.+...
T Consensus 170 Eah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 243 (394)
T 1fuu_A 170 EADEML-SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE----- 243 (394)
T ss_dssp THHHHH-HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred ChHHhh-CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch-----
Confidence 999998 67899999999999999999999999999999898889998877766554455555667766665542
Q ss_pred chhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 508 TPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 508 ~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..+...|..++.....+++||||++++
T Consensus 244 ------~~~~~~l~~~~~~~~~~~~lVf~~~~~ 270 (394)
T 1fuu_A 244 ------EYKYECLTDLYDSISVTQAVIFCNTRR 270 (394)
T ss_dssp ---------------------------------
T ss_pred ------hhHHHHHHHHHhcCCCCcEEEEECCHH
Confidence 246677888887777789999999874
No 25
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=279.45 Aligned_cols=206 Identities=25% Similarity=0.428 Sum_probs=174.5
Q ss_pred cccccc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCC
Q 009212 268 KSFKEL----GCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTS 343 (540)
Q Consensus 268 ~~F~~l----~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~ 343 (540)
.+|+++ ++++.++++|.++||..|+++|.++|+.++.|+|++++||||+|||++|++|+++.+.. ...
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~--------~~~ 96 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ--------PAN 96 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS--------CCS
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------ccc
Confidence 568776 89999999999999999999999999999999999999999999999999999988743 224
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHH-HhhcCCCcEEEeChHHHHHHHHhc--cccCCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL-ENLQEGVDVLIATPGRFMFLIKEG--ILQLIN 420 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~-~~l~~~~dIlVaTP~rL~~ll~~~--~~~l~~ 420 (540)
.++++|||+||++|+.|+++.+++++.. .++++..++|+....... .....+++|+|+||++|.+++... ...+.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEG-TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc-cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 5778999999999999999999998764 567777777665433221 222457899999999999999876 467889
Q ss_pred ccEEEEeCCcccCCC--CCHHHHHHHHHHhC-CCCCcEEEEeccCCHHHHHHHHHhCCCceEEeC
Q 009212 421 LRCAILDEVDILFND--EDFEVALQSLISSS-PVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMG 482 (540)
Q Consensus 421 i~~LVlDEad~ll~d--~~f~~~i~~Il~~l-~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~ 482 (540)
+++|||||||+|+++ .+|...+..++..+ +...|+++||||+|.++.+++..++.++..+..
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~ 240 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSI 240 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEE
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999831 57999999998776 457899999999999999999999998877654
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-32 Score=283.07 Aligned_cols=242 Identities=27% Similarity=0.466 Sum_probs=209.6
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
.+|++++|++.++++|.++||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++..+.. ..++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~----------~~~~ 75 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE----------NNGI 75 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS----------SSSC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc----------cCCC
Confidence 47999999999999999999999999999999999988 799999999999999999999876532 2467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++||++|+++|+.|+++.++++... ..+.+..++|+.....+...+. .++|+|+||++|..++..+...+.+++++|+
T Consensus 76 ~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 76 EAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred cEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 8999999999999999999998763 5678899999998877766665 5899999999999999888888899999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||++. +.+|...+..++..++...|++++|||++..+...+..++.++..+... ...++.+.++.+..
T Consensus 154 DEah~~~-~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----- 223 (367)
T 1hv8_A 154 DEADEML-NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNE----- 223 (367)
T ss_dssp ETHHHHH-TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC----SSSSSEEEEEECCG-----
T ss_pred eCchHhh-hhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec----CCCCceEEEEEeCh-----
Confidence 9999998 7889999999999998899999999999999998888888887665433 23457777777654
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
..+...|..++.. ...++||||+++
T Consensus 224 -------~~~~~~l~~~l~~-~~~~~lvf~~~~ 248 (367)
T 1hv8_A 224 -------NERFEALCRLLKN-KEFYGLVFCKTK 248 (367)
T ss_dssp -------GGHHHHHHHHHCS-TTCCEEEECSSH
T ss_pred -------HHHHHHHHHHHhc-CCCcEEEEECCH
Confidence 3578888888874 456899999986
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-32 Score=304.39 Aligned_cols=258 Identities=19% Similarity=0.308 Sum_probs=201.6
Q ss_pred cccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCC
Q 009212 269 SFKELG----CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKST 342 (540)
Q Consensus 269 ~F~~l~----L~~~ll~~L~~~gf~~ptpiQ~~aip~il--~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~ 342 (540)
+|.++. |+++++++|.++||..|+|+|.++|+.++ .|+|++++||||+|||++|++|+++.+..... ..
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-----~~ 92 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DS 92 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SS
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-----cc
Confidence 455553 99999999999999999999999999999 78999999999999999999999999876532 22
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHhhhcC---CCCceEEEEeCCcchHHHHHhhcC-CCcEEEeChHHHHHHHHhc-ccc
Q 009212 343 SGSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVTGGFRQKTQLENLQE-GVDVLIATPGRFMFLIKEG-ILQ 417 (540)
Q Consensus 343 ~~~p~aLIL~PtreLa~Qi~~~l~~l~~~---~~~l~v~~l~Gg~~~~~q~~~l~~-~~dIlVaTP~rL~~ll~~~-~~~ 417 (540)
..++++|||+||++||.|+++.++++... ...+.+..++|+.....+...+.. +++|+|+||++|.+++... ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 34678999999999999999999998642 134678889999988887777743 7899999999999988764 456
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC-------CCCcEEEEeccCCHHHHHHHHHhCCCceEEeCC----Ccc
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSP-------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP----GMH 486 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~-------~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~----~~~ 486 (540)
+..+++|||||||+|+ +++|...+..|+..++ ..+|+++||||+++.+..++..++.++..+... ...
T Consensus 173 ~~~~~~lViDEah~l~-~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLL-EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp CTTCCEEEEETHHHHT-STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred cccCCEEEEEChHHhh-cCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 8899999999999999 7899999998887653 367999999999999988888788775544322 122
Q ss_pred ccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHh-CCCCcEEEEeccc
Q 009212 487 RISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKK 539 (540)
Q Consensus 487 ~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~-~~~~rtIIFcnSr 539 (540)
.....+.+.++.+.... ......+..|...+.. ....++||||+|+
T Consensus 252 ~~~~~i~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~ 298 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFA-------NSIFAAVEHIKKQIKERDSNYKAIIFAPTV 298 (579)
T ss_dssp SSCTTEEEEEEEESSTT-------HHHHHHHHHHHHHHHHTTTCCEEEEECSSH
T ss_pred ccccccceEEEEecchh-------hhHHHHHHHHHHHHhhcCCCCcEEEECCcH
Confidence 33445666666654321 1112233444444444 4567999999986
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.3e-32 Score=302.42 Aligned_cols=252 Identities=19% Similarity=0.311 Sum_probs=196.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~il--~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~ 352 (540)
|++.++++|.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+..... ....++++|||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-----~~~~~~~~lil~ 153 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-----DSQYMVKAVIVA 153 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----SSTTSCCEEEEC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----cccCCeeEEEEc
Confidence 99999999999999999999999999999 67899999999999999999999999876531 223467899999
Q ss_pred cCHHHHHHHHHHHHhhhcCC---CCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhc-cccCCCccEEEEe
Q 009212 353 PTAELASQVLSNCRSLSKCG---VPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG-ILQLINLRCAILD 427 (540)
Q Consensus 353 PtreLa~Qi~~~l~~l~~~~---~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~-~~~l~~i~~LVlD 427 (540)
||++||.|+++.++.+.... ..+.+..++|+.....+...+. .+++|+|+||++|.+++.+. ...+..+++||||
T Consensus 154 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 233 (563)
T 3i5x_A 154 PTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLD 233 (563)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEe
Confidence 99999999999999975421 2466888999988877776663 47899999999999988764 3467889999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCC-------CCCcEEEEeccCCHHHHHHHHHhCCCceEEeCC----CccccCCCceeEE
Q 009212 428 EVDILFNDEDFEVALQSLISSSP-------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGP----GMHRISPGLEEFL 496 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~-------~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~----~~~~~~~~I~q~~ 496 (540)
|||+|+ +++|...+..|+..++ ..+|+++||||++..+..++..++.++..+... ........+.+.+
T Consensus 234 Eah~l~-~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (563)
T 3i5x_A 234 EADRLL-EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSV 312 (563)
T ss_dssp THHHHT-STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEE
T ss_pred CHHHHh-ccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEE
Confidence 999999 7899999998877652 367999999999999988887777765544321 1223344566666
Q ss_pred EEcCCCCCCCCchhhHhhhHHHHHHHHHHh-CCCCcEEEEeccc
Q 009212 497 VDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKK 539 (540)
Q Consensus 497 v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~-~~~~rtIIFcnSr 539 (540)
+.+.... ......+..+...+.. ....++||||+|+
T Consensus 313 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~ 349 (563)
T 3i5x_A 313 VISEKFA-------NSIFAAVEHIKKQIKERDSNYKAIIFAPTV 349 (563)
T ss_dssp EEESSTT-------HHHHHHHHHHHHHHHHTTTCCEEEEECSCH
T ss_pred EECchhH-------hhHHHHHHHHHHHHhhcCCCCcEEEEcCcH
Confidence 6554321 1111233344444443 4567999999986
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-31 Score=271.42 Aligned_cols=230 Identities=23% Similarity=0.439 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
|++++.++|+++||..|+|+|+++++.++.|+++++.+|||+|||++|++|++.. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------------cCCEEEEeCC
Confidence 5789999999999999999999999999999999999999999999999998753 3569999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCC
Q 009212 355 AELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (540)
Q Consensus 355 reLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~ 434 (540)
++|+.|+++.+++++.. .++.+..++|+.....+...+.. ++|+|+||++|.+++..+.+.+.+++++|+||||++.
T Consensus 66 ~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~- 142 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRY-MDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF- 142 (337)
T ss_dssp HHHHHHHHHHHHHHTTT-SCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH-
T ss_pred HHHHHHHHHHHHHHhhh-cCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh-
Confidence 99999999999998763 56788999999888777666654 8999999999999998887788899999999999998
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhh
Q 009212 435 DEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFL 514 (540)
Q Consensus 435 d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~ 514 (540)
+.++...+..++..++...|++++|||++..+...+..++.++..+... ....++.+.++.+....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------- 208 (337)
T 2z0m_A 143 EMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW----------- 208 (337)
T ss_dssp HTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS-----------
T ss_pred ccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH-----------
Confidence 6789999999999999999999999999999999999999887765432 33445677777765421
Q ss_pred hHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 515 NKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 515 ~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
......+.....+++||||+++
T Consensus 209 ---~~~~~~~~~~~~~~~lvf~~~~ 230 (337)
T 2z0m_A 209 ---RSKVQALRENKDKGVIVFVRTR 230 (337)
T ss_dssp ---HHHHHHHHTCCCSSEEEECSCH
T ss_pred ---HHHHHHHHhCCCCcEEEEEcCH
Confidence 1223556667778999999986
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.7e-31 Score=286.20 Aligned_cols=247 Identities=21% Similarity=0.349 Sum_probs=180.0
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEG--KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G--~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
.|...++++.+++.|.+.||..|+++|.++|+.++.| +++++++|||||||++|+++++..+... ..++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~---------~~~~ 190 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS---------VPKP 190 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT---------CCSC
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC---------CCCc
Confidence 4666788999999999999999999999999999998 9999999999999999999999887432 3467
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+|+++|+.|+++.+++++.. ..+.+...+++..... ...+++|+|+||++|..++..+...+.++++|||
T Consensus 191 ~vLvl~P~~~L~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 191 QAICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHSTT-SSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred eEEEEECcHHHHHHHHHHHHHhCCc-cCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 8999999999999999999998763 4455555555543322 2346899999999999999888888999999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCCCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESD 506 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~ 506 (540)
||||++.++.++...+..++..++...|++++|||+++.+..+...++.++..+...........+.+.++.+...
T Consensus 266 DEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---- 341 (508)
T 3fho_A 266 DEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE---- 341 (508)
T ss_dssp CCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C----
T ss_pred echhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch----
Confidence 9999998446899999999999999999999999999999888888888887776665555666677777776543
Q ss_pred CchhhHhhhHHHHHHHHHHhCCCCcEEEEecccC
Q 009212 507 KTPETAFLNKKSALLQLIEKSPVSKTIVFCNKKS 540 (540)
Q Consensus 507 ~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr~ 540 (540)
..+...+..++.....+++||||++++
T Consensus 342 -------~~k~~~l~~ll~~~~~~~~LVF~~s~~ 368 (508)
T 3fho_A 342 -------EHKYNVLVELYGLLTIGQSIIFCKKKD 368 (508)
T ss_dssp -------HHHHHHHHHHHC---CCCEEEBCSSTT
T ss_pred -------HHHHHHHHHHHHhcCCCcEEEEECCHH
Confidence 467788888888877789999999974
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=9.9e-31 Score=276.54 Aligned_cols=226 Identities=15% Similarity=0.189 Sum_probs=174.3
Q ss_pred HHHHHHHHC-CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH
Q 009212 278 YMIESLKRQ-NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (540)
Q Consensus 278 ~ll~~L~~~-gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre 356 (540)
++.+.+++. || .|+|+|.++|+.++.|+|++++||||||||++|++|++..+ ..++++|||+||++
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~------------~~~~~~lil~Pt~~ 75 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH------------TTTCCEEEEESSHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh------------cCCCEEEEEECCHH
Confidence 345555553 66 89999999999999999999999999999999999988765 23678999999999
Q ss_pred HHHHHHHHHHhhhcCCCCceEEEEeCCcch---HHHHHhhcCC-CcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc
Q 009212 357 LASQVLSNCRSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 357 La~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~---~~q~~~l~~~-~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l 432 (540)
|+.|+++.++.++. .++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++
T Consensus 76 L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 76 LVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhh
Confidence 99999999999876 57899999999987 5566666665 99999999999988874 66779999999999876
Q ss_pred CC---------C-CCHHHH-HHHHHHhCC-----------CCCcEEEEecc-CCHHHHHHHHHhCCCceEEeCCCccccC
Q 009212 433 FN---------D-EDFEVA-LQSLISSSP-----------VTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPGMHRIS 489 (540)
Q Consensus 433 l~---------d-~~f~~~-i~~Il~~l~-----------~~~Q~ll~SAT-lp~~i~~~l~~~l~~~~~i~~~~~~~~~ 489 (540)
.. + ++|... +..++..++ ..+|++++||| +|..+...+...+... .........
T Consensus 152 ~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~---~~~~~~~~~ 228 (414)
T 3oiy_A 152 LKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVA 228 (414)
T ss_dssp HHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC---CSSCCCCCC
T ss_pred hhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc---CcCcccccc
Confidence 41 2 567777 788888765 78999999999 6655443333322211 112233445
Q ss_pred CCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 490 ~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.++.+.++.+. +...|..+++.. ..++||||+++
T Consensus 229 ~~i~~~~~~~~---------------~~~~l~~~l~~~-~~~~lVF~~~~ 262 (414)
T 3oiy_A 229 RNITHVRISSR---------------SKEKLVELLEIF-RDGILIFAQTE 262 (414)
T ss_dssp CSEEEEEESSC---------------CHHHHHHHHHHH-CSSEEEEESSH
T ss_pred ccchheeeccC---------------HHHHHHHHHHHc-CCCEEEEECCH
Confidence 56777777552 345567777763 37999999986
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=3.6e-28 Score=269.93 Aligned_cols=236 Identities=14% Similarity=0.186 Sum_probs=179.9
Q ss_pred cccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 269 SFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
.|.++++++.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ..+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~---------------~g~ 86 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS---------------DGF 86 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS---------------SSE
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc---------------CCc
Confidence 45678899999999999 59999999999999999999999999999999999999999742 348
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh------hcCCCcEEEeChHHHH------HHHHhcc
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN------LQEGVDVLIATPGRFM------FLIKEGI 415 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~------l~~~~dIlVaTP~rL~------~ll~~~~ 415 (540)
+|||+|+++|+.|+++.++.+ ++.+..+.|+....+.... ....++|+|+||++|. +.+. ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~ 160 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KA 160 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hh
Confidence 999999999999999999987 3577888888776554322 2356899999999874 2333 24
Q ss_pred ccCCCccEEEEeCCcccCCCCC--HHHHHHH--HHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC--ceEEeCCCccccC
Q 009212 416 LQLINLRCAILDEVDILFNDED--FEVALQS--LISSSPVTAQYLFVTATLPVEIYNKLVEVFPD--CKVVMGPGMHRIS 489 (540)
Q Consensus 416 ~~l~~i~~LVlDEad~ll~d~~--f~~~i~~--Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~--~~~i~~~~~~~~~ 489 (540)
..+..+.+|||||||++. +++ |.+.+.. ++....+..|+++||||+++.+...+..++.. +..+... ...
T Consensus 161 ~~~~~i~~iViDEAH~is-~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r 236 (591)
T 2v1x_A 161 YEARRFTRIAVDEVHCCS-QWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNR 236 (591)
T ss_dssp HHTTCEEEEEEETGGGGS-TTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCC
T ss_pred hhccCCcEEEEECccccc-ccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCC
Confidence 567889999999999998 555 6666554 33333347999999999999998888888754 3333322 233
Q ss_pred CCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHh-CCCCcEEEEeccc
Q 009212 490 PGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKK 539 (540)
Q Consensus 490 ~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~-~~~~rtIIFcnSr 539 (540)
.++.+.+...... ...++..|.+++.. ....++||||+|+
T Consensus 237 ~nl~~~v~~~~~~----------~~~~~~~l~~~l~~~~~~~~~IVf~~sr 277 (591)
T 2v1x_A 237 PNLYYEVRQKPSN----------TEDFIEDIVKLINGRYKGQSGIIYCFSQ 277 (591)
T ss_dssp TTEEEEEEECCSS----------HHHHHHHHHHHHTTTTTTCEEEEECSSH
T ss_pred cccEEEEEeCCCc----------HHHHHHHHHHHHHHhccCCCeEEEeCcH
Confidence 4454444433211 13466778888765 3667999999986
No 33
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.6e-29 Score=291.73 Aligned_cols=191 Identities=18% Similarity=0.233 Sum_probs=164.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
..|..+++++.+...+...++..|+++|.++|+.++.|+|+|++||||||||++|++|++..+.. +.+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~------------g~r 229 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN------------KQR 229 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT------------TCE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc------------CCe
Confidence 36777888877777776667778999999999999999999999999999999999999988732 568
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+||++||++|+.|+++.++.++. .+.+++|+... ..+++|+|+||++|.+++.++...+.++++||||
T Consensus 230 vlvl~PtraLa~Q~~~~l~~~~~-----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVID 297 (1108)
T 3l9o_A 230 VIYTSPIKALSNQKYRELLAEFG-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 297 (1108)
T ss_dssp EEEEESSHHHHHHHHHHHHHHTS-----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhC-----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEh
Confidence 99999999999999999999864 57788888763 3468999999999999999887778899999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCH--HHHHHHHHhCCCceEEeCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV--EIYNKLVEVFPDCKVVMGP 483 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~--~i~~~l~~~l~~~~~i~~~ 483 (540)
|||+|. +.+|...+..++..++...|+|+||||+|. ++..++......+..++..
T Consensus 298 EaH~l~-d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~ 354 (1108)
T 3l9o_A 298 EVHYMR-DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYT 354 (1108)
T ss_dssp TGGGTT-SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEE
T ss_pred hhhhcc-ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec
Confidence 999999 788999999999999999999999999975 5667777777665554443
No 34
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=3.1e-28 Score=286.88 Aligned_cols=219 Identities=15% Similarity=0.192 Sum_probs=173.9
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 285 ~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
..|| +|||+|.++||.++.|+|++++||||||||++|+++++..+ ..++++|||+||++||.|+++.
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~------------~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA------------RKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH------------TTTCCEEEEESSHHHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH------------hcCCeEEEEechHHHHHHHHHH
Confidence 3688 69999999999999999999999999999999988888766 2367899999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcch---HHHHHhhcCC-CcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCC------
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQ---KTQLENLQEG-VDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN------ 434 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~---~~q~~~l~~~-~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~------ 434 (540)
++.++ ..++++..++|+... ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||++..
T Consensus 141 l~~l~--~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~D 216 (1104)
T 4ddu_A 141 LQKLA--DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNID 216 (1104)
T ss_dssp HHTTS--CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHH
T ss_pred HHHhh--CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccch
Confidence 99987 367899999999987 6677777776 99999999999988874 6678999999999976552
Q ss_pred ---C-CCHHHH-HHHHHHhCC-----------CCCcEEEEecc-CCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEE
Q 009212 435 ---D-EDFEVA-LQSLISSSP-----------VTAQYLFVTAT-LPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLV 497 (540)
Q Consensus 435 ---d-~~f~~~-i~~Il~~l~-----------~~~Q~ll~SAT-lp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v 497 (540)
+ ++|... +..+++.++ ..+|+++|||| .|..+...+...+... ..........++.+.++
T Consensus 217 r~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i---~v~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 217 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC---CCCBCCCCCCCEEEEEE
T ss_pred hhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE---EeccCCCCcCCceeEEE
Confidence 3 677777 888888776 78999999999 6665543333332221 11223345567788877
Q ss_pred EcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 498 DCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.+. |...|..++.... .++|||||++
T Consensus 294 ~~~---------------k~~~L~~ll~~~~-~~~LVF~~s~ 319 (1104)
T 4ddu_A 294 SSR---------------SKEKLVELLEIFR-DGILIFAQTE 319 (1104)
T ss_dssp SCC---------------CHHHHHHHHHHHC-SSEEEEESSS
T ss_pred ecC---------------HHHHHHHHHHhcC-CCEEEEECcH
Confidence 653 3455677776643 7999999997
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.95 E-value=5.8e-28 Score=273.82 Aligned_cols=189 Identities=22% Similarity=0.336 Sum_probs=164.2
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPR 347 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~ 347 (540)
+|++++|++.+.+.+++.||..|+++|.++|+. +..++|++++||||||||++|.+|+++.+... +.+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~ 70 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----------GGK 70 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----------CSE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CCE
Confidence 599999999999999999999999999999998 88999999999999999999999999888643 468
Q ss_pred EEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEe
Q 009212 348 VVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILD 427 (540)
Q Consensus 348 aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlD 427 (540)
+||++|+++||.|+++.++.+... ++++..++|+...... ....++|+|+||++|..++.+....+.++++||||
T Consensus 71 ~l~i~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiD 145 (720)
T 2zj8_A 71 AVYIVPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145 (720)
T ss_dssp EEEECSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEE
Confidence 999999999999999999877653 6788999998765432 12358999999999999998877778899999999
Q ss_pred CCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC
Q 009212 428 EVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD 476 (540)
Q Consensus 428 Ead~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~ 476 (540)
|||++. +.++...+..++..++...|+|++|||+++. ..+..|+..
T Consensus 146 E~H~l~-~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~ 191 (720)
T 2zj8_A 146 EIHLIG-SRDRGATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNA 191 (720)
T ss_dssp TGGGGG-CTTTHHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTE
T ss_pred CCcccC-CCcccHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCC
Confidence 999998 6788999999988887689999999999752 445667753
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1.2e-27 Score=262.24 Aligned_cols=233 Identities=18% Similarity=0.260 Sum_probs=179.4
Q ss_pred ccccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 268 KSFKELGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
.+|++++|++.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------------~g 66 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------------NG 66 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------------SS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------------CC
Confidence 369999999999999998 79999999999999999999999999999999999999999742 24
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh---h-cCCCcEEEeChHHHHHHHHhccccCCCcc
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLINLR 422 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l-~~~~dIlVaTP~rL~~ll~~~~~~l~~i~ 422 (540)
.+|||+|+++|+.|+++.++.+ ++.+..+.++....+.... + ...++|+|+||++|........+...++.
T Consensus 67 ~~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~ 141 (523)
T 1oyw_A 67 LTVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPV 141 (523)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEE
T ss_pred CEEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCC
Confidence 6999999999999999999876 3567778887765544322 2 34589999999999633222234457899
Q ss_pred EEEEeCCcccCCCCC--HHHHHHH---HHHhCCCCCcEEEEeccCCHHHHHHHHHhC--CCceEEeCCCccccCCCceeE
Q 009212 423 CAILDEVDILFNDED--FEVALQS---LISSSPVTAQYLFVTATLPVEIYNKLVEVF--PDCKVVMGPGMHRISPGLEEF 495 (540)
Q Consensus 423 ~LVlDEad~ll~d~~--f~~~i~~---Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l--~~~~~i~~~~~~~~~~~I~q~ 495 (540)
+|||||||++. +++ |.+.+.. +...++ ..+++++|||++..+...+..++ .++.++.... ...++...
T Consensus 142 ~vViDEaH~i~-~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~~l~~~ 216 (523)
T 1oyw_A 142 LLAVDEAHCIS-QWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNIRYM 216 (523)
T ss_dssp EEEESSGGGGC-TTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC---CCTTEEEE
T ss_pred EEEEeCccccC-cCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC---CCCceEEE
Confidence 99999999998 555 6555544 455554 68999999999998877777665 3455544322 23445444
Q ss_pred EEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 496 LVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 496 ~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
+... ..+...|..++......++||||+|+
T Consensus 217 v~~~--------------~~~~~~l~~~l~~~~~~~~IVf~~sr 246 (523)
T 1oyw_A 217 LMEK--------------FKPLDQLMRYVQEQRGKSGIIYCNSR 246 (523)
T ss_dssp EEEC--------------SSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred EEeC--------------CCHHHHHHHHHHhcCCCcEEEEeCCH
Confidence 4332 24677788888887778999999997
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.95 E-value=2.3e-27 Score=268.62 Aligned_cols=189 Identities=19% Similarity=0.286 Sum_probs=162.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
.+|++++|++.+.+.+.+.||..|+++|.++|+. +..++|++++||||||||++|.+++++.+... +.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~ 76 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-----------GG 76 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----------CS
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-----------CC
Confidence 5799999999999999999999999999999999 78899999999999999999999999887532 46
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++||++|+|+||.|+++.++.+.. .++++..++|+...... .+ ..++|+|+||++|..++......+.++++|||
T Consensus 77 ~il~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 151 (715)
T 2va8_A 77 KAIYVTPLRALTNEKYLTFKDWEL--IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL 151 (715)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGGG--GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhc--CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE
Confidence 899999999999999999976655 36788889988765432 12 35899999999999999887777899999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCC
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPD 476 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~ 476 (540)
||||.+. +..+...++.++..++ ..|+|++|||+++. ..+..|+..
T Consensus 152 DE~H~l~-~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~--~~~~~~l~~ 197 (715)
T 2va8_A 152 DELHYLN-DPERGPVVESVTIRAK-RRNLLALSATISNY--KQIAKWLGA 197 (715)
T ss_dssp CSGGGGG-CTTTHHHHHHHHHHHH-TSEEEEEESCCTTH--HHHHHHHTC
T ss_pred echhhcC-CcccchHHHHHHHhcc-cCcEEEEcCCCCCH--HHHHHHhCC
Confidence 9999988 6788888888887776 89999999999742 345566653
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.95 E-value=1.3e-27 Score=270.32 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=158.5
Q ss_pred cccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 269 SFKELG--CSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 269 ~F~~l~--L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
+|++++ |++.+.+.|++.||..|+++|.++++.++.|+|++++||||||||++|.+|+++.+.. +.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------------~~ 69 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------------GG 69 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------------TC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------------CC
Confidence 588999 9999999999999999999999999999999999999999999999999999988642 45
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++||++|+++||.|+++.++.+.. .++++..++|+...... ....++|+|+||++|..++.+....+.++++|||
T Consensus 70 ~~l~i~P~r~La~q~~~~~~~~~~--~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 70 KSLYVVPLRALAGEKYESFKKWEK--IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTTT--TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE
T ss_pred cEEEEeCcHHHHHHHHHHHHHHHh--cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE
Confidence 799999999999999999976654 36789999998765432 1236899999999999999887767889999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhC---CCCCcEEEEeccCCHHHHHHHHHhCCCc
Q 009212 427 DEVDILFNDEDFEVALQSLISSS---PVTAQYLFVTATLPVEIYNKLVEVFPDC 477 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l---~~~~Q~ll~SATlp~~i~~~l~~~l~~~ 477 (540)
||||.+. +.++...+..++..+ ....|++++|||+++ ...+..|+...
T Consensus 145 DE~H~l~-~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~~ 195 (702)
T 2p6r_A 145 DEIHLLD-SEKRGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDAD 195 (702)
T ss_dssp TTGGGGG-CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTCE
T ss_pred eeeeecC-CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCCC
Confidence 9999998 667777777776655 568999999999985 24566777643
No 39
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.94 E-value=1.1e-25 Score=253.02 Aligned_cols=176 Identities=20% Similarity=0.273 Sum_probs=142.7
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHH
Q 009212 280 IESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (540)
Q Consensus 280 l~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~ 359 (540)
..+|..+||..|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+.... ...+.++|||+||++|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-------~~~~~~~lvl~Pt~~L~~ 75 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------QGQKGKVVFFANQIPVYE 75 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-------TTCCCCEEEECSSHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-------cCCCCeEEEEECCHHHHH
Confidence 3567788999999999999999999999999999999999999999999886531 123468999999999999
Q ss_pred HHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc-cCCCccEEEEeCCcccCCCCCH
Q 009212 360 QVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDF 438 (540)
Q Consensus 360 Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~-~l~~i~~LVlDEad~ll~d~~f 438 (540)
|+++.+++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+..+++|||||||++.+...+
T Consensus 76 Q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~ 154 (696)
T 2ykg_A 76 QNKSVFSKYFER-HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPY 154 (696)
T ss_dssp HHHHHHHHHTTT-TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHH
T ss_pred HHHHHHHHHhcc-CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccH
Confidence 999999999753 57899999999876655566666799999999999999988766 7889999999999999854445
Q ss_pred HHHHHHHHHh-----CCCCCcEEEEeccCC
Q 009212 439 EVALQSLISS-----SPVTAQYLFVTATLP 463 (540)
Q Consensus 439 ~~~i~~Il~~-----l~~~~Q~ll~SATlp 463 (540)
...+..++.. .+...|++++|||+.
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 155 NMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 5555444433 245789999999997
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=1e-25 Score=245.22 Aligned_cols=168 Identities=19% Similarity=0.275 Sum_probs=132.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
+..+|+|+|.++|+.++.|+|+++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+++.++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~ 76 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-------AGRKAKVVFLATKVPVYEQQKNVFK 76 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-------ccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 455899999999999999999999999999999999999998886531 1236789999999999999999999
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc-cCCCccEEEEeCCcccCCCCC-HHHHHHH
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDED-FEVALQS 444 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~-~l~~i~~LVlDEad~ll~d~~-f~~~i~~ 444 (540)
+++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+..+++|||||||++. +.+ +...+..
T Consensus 77 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~-~~~~~~~~~~~ 154 (556)
T 4a2p_A 77 HHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTR 154 (556)
T ss_dssp HHHGG-GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCS-TTSHHHHHHHH
T ss_pred HHhcc-cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccC-CcchHHHHHHH
Confidence 98763 47889999999877766666666799999999999999988777 79999999999999998 444 3333334
Q ss_pred HHHh----CCCCCcEEEEeccCC
Q 009212 445 LISS----SPVTAQYLFVTATLP 463 (540)
Q Consensus 445 Il~~----l~~~~Q~ll~SATlp 463 (540)
++.. .....|++++|||++
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVG 177 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCC
T ss_pred HHHhhhcccCCCCeEEEEeCCcc
Confidence 4332 134689999999995
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.94 E-value=1.5e-25 Score=243.40 Aligned_cols=167 Identities=19% Similarity=0.272 Sum_probs=140.2
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
+|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+.... ...++++|||+||++|+.|+++.+++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-------CGQKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-------SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-------cCCCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999886531 1336789999999999999999999998
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc-cCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~-~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
.. .++++..++|+.....+...+..+++|+|+||++|..++..+.+ .+.++++|||||||++.+...+...+..++..
T Consensus 77 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 155 (555)
T 3tbk_A 77 ER-LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDH 155 (555)
T ss_dssp HT-TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHH
T ss_pred cc-CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHh
Confidence 64 57899999999977766666666799999999999999988777 78899999999999999433455555455443
Q ss_pred C-----CCCCcEEEEeccCCH
Q 009212 449 S-----PVTAQYLFVTATLPV 464 (540)
Q Consensus 449 l-----~~~~Q~ll~SATlp~ 464 (540)
. ....|++++|||++.
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCC
T ss_pred hhccccCCCCeEEEEecCccc
Confidence 2 246799999999953
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=2.3e-27 Score=278.93 Aligned_cols=219 Identities=18% Similarity=0.187 Sum_probs=168.2
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHH
Q 009212 281 ESLKR-QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELAS 359 (540)
Q Consensus 281 ~~L~~-~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~ 359 (540)
+.+.+ +||. | ++|.++|+.++.|+|++++||||||||+ |++|++..+.. .++++|||+||++||.
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----------~~~~~lil~PtreLa~ 113 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVI 113 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----------TSCCEEEEESCHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----------cCCeEEEEeccHHHHH
Confidence 44444 6999 9 9999999999999999999999999998 99999887753 3678999999999999
Q ss_pred HHHHHHHhhhcCCCCc----eEEEEeCCcchHH---HHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc
Q 009212 360 QVLSNCRSLSKCGVPF----RSMVVTGGFRQKT---QLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 360 Qi~~~l~~l~~~~~~l----~v~~l~Gg~~~~~---q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l 432 (540)
|+++.++.++.. .++ ++..++|+..... +...+.+ ++|+|+||++|.+++.+ +.++++|||||||+|
T Consensus 114 Q~~~~l~~l~~~-~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~ 187 (1054)
T 1gku_B 114 QAAETIRKYAEK-AGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAI 187 (1054)
T ss_dssp HHHHHHHHHHTT-TCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHhh-cCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhh
Confidence 999999999874 456 8999999988766 3455556 99999999999988765 679999999999999
Q ss_pred CCCCCHHHHHHHHHHhCC-----------CCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCC
Q 009212 433 FNDEDFEVALQSLISSSP-----------VTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (540)
Q Consensus 433 l~d~~f~~~i~~Il~~l~-----------~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~ 501 (540)
+ + +...++.++..++ ..+|++++|||++.. ..+...++.++..+..........++.+.++. .
T Consensus 188 l-~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~--~ 261 (1054)
T 1gku_B 188 L-K--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN--D 261 (1054)
T ss_dssp H-T--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES--C
T ss_pred h-h--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec--h
Confidence 9 4 5677788877763 568999999999865 32222222222222222233445567777662 1
Q ss_pred CCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 502 DQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.|...|..+++.. ..++||||+|+
T Consensus 262 -------------~k~~~L~~ll~~~-~~~~LVF~~t~ 285 (1054)
T 1gku_B 262 -------------ESISTLSSILEKL-GTGGIIYARTG 285 (1054)
T ss_dssp -------------CCTTTTHHHHTTS-CSCEEEEESSH
T ss_pred -------------hHHHHHHHHHhhc-CCCEEEEEcCH
Confidence 2445677777765 46899999986
No 43
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.7e-25 Score=258.74 Aligned_cols=187 Identities=19% Similarity=0.280 Sum_probs=152.5
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHH
Q 009212 284 KRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLS 363 (540)
Q Consensus 284 ~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~ 363 (540)
...+|. |+++|.++|+.++.|++++++||||||||++|+++++..+. .+.++||++||++|+.|+++
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------------~g~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------------NKQRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------------TTCEEEEEESSHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------------cCCeEEEECChHHHHHHHHH
Confidence 344775 99999999999999999999999999999999999988763 25689999999999999999
Q ss_pred HHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHH
Q 009212 364 NCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQ 443 (540)
Q Consensus 364 ~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~ 443 (540)
.+..++. .+.+++|+.... ..++|+|+||++|.+++.++...+.++++|||||||+|. +.++...++
T Consensus 148 ~l~~~~~-----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~-d~~rg~~~e 214 (1010)
T 2xgj_A 148 ELLAEFG-----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR-DKERGVVWE 214 (1010)
T ss_dssp HHHHHHS-----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGG-CTTTHHHHH
T ss_pred HHHHHhC-----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhc-ccchhHHHH
Confidence 9999864 678888887653 357999999999999998887888999999999999998 788899999
Q ss_pred HHHHhCCCCCcEEEEeccCCHH--HHHHHHHhCCCceEEeCCCccccCCCceeEEEE
Q 009212 444 SLISSSPVTAQYLFVTATLPVE--IYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVD 498 (540)
Q Consensus 444 ~Il~~l~~~~Q~ll~SATlp~~--i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~ 498 (540)
.++..++...|++++|||+|.. +..++......+..++..... +..++++++.
T Consensus 215 ~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~ 269 (1010)
T 2xgj_A 215 ETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFP 269 (1010)
T ss_dssp HHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEE
T ss_pred HHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEe
Confidence 9999999999999999999864 335555444544443332222 2335555554
No 44
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=5.9e-26 Score=256.09 Aligned_cols=162 Identities=19% Similarity=0.222 Sum_probs=137.8
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 285 ~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.+|| +||++|..++|.++.|+ |+.++||+|||++|++|++...+ .++.++||+||++||.|++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL------------~g~~vlVltptreLA~qd~e~ 143 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL------------TGKGVHVVTVNEYLASRDAEQ 143 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHH
Confidence 4799 99999999999999999 99999999999999999985432 245799999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhc------cccCCCccEEEEeCCcccCCCC-
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFNDE- 436 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~------~~~l~~i~~LVlDEad~ll~d~- 436 (540)
+..++.+ .++++.+++||.....+... .+|||+|+||++| .++|..+ ...+..+.++||||||.|+-|+
T Consensus 144 ~~~l~~~-lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 144 MGKIFEF-LGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp HHHHHHH-TTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 9999886 68999999999876554433 4699999999999 6776543 3567899999999999987444
Q ss_pred --------------CHHHHHHHHHHhCC---------CCCcEE-----------------EEeccCCH
Q 009212 437 --------------DFEVALQSLISSSP---------VTAQYL-----------------FVTATLPV 464 (540)
Q Consensus 437 --------------~f~~~i~~Il~~l~---------~~~Q~l-----------------l~SATlp~ 464 (540)
+|...+..|+..++ +.+|++ +||||++.
T Consensus 221 ~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 221 RTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp TCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred ccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 37889999999997 478988 99999873
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=4.1e-25 Score=253.26 Aligned_cols=170 Identities=19% Similarity=0.272 Sum_probs=136.4
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
+|+..|+|+|.++|+.++.|+|+|+++|||+|||++|++|+++.+... ....++++|||+||++|+.|+++.+
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~-------~~~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-------CSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc-------cccCCCeEEEEeCCHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999988653 1123678999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc-cCCCccEEEEeCCcccCCCCCHHHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQS 444 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~-~l~~i~~LVlDEad~ll~d~~f~~~i~~ 444 (540)
++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.....+...+..
T Consensus 317 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~ 395 (797)
T 4a2q_A 317 KHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 395 (797)
T ss_dssp HHHHGG-GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHH
T ss_pred HHhccc-CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHH
Confidence 998763 47899999999977776666767899999999999999988777 7889999999999999843334544444
Q ss_pred HHHh----CCCCCcEEEEeccCC
Q 009212 445 LISS----SPVTAQYLFVTATLP 463 (540)
Q Consensus 445 Il~~----l~~~~Q~ll~SATlp 463 (540)
++.. .....|++++|||++
T Consensus 396 ~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 396 YLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHHTTCCCCCEEEEEESCCC
T ss_pred HHHHhhccCCCCCeEEEEcCCcc
Confidence 4443 145689999999985
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=1e-24 Score=265.81 Aligned_cols=241 Identities=20% Similarity=0.265 Sum_probs=170.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEcc
Q 009212 275 CSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAP 353 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ~~aip~il~-G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~P 353 (540)
|....+++|...+|..++|+|.++|+.++. ++|++++||||||||++|.+|+++.+.+. .+.++|||+|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~----------~~~kavyi~P 980 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS----------SEGRCVYITP 980 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC----------TTCCEEEECS
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC----------CCCEEEEEcC
Confidence 556788888888999999999999999975 57899999999999999999999998753 3557999999
Q ss_pred CHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc--cccCCCccEEEEeCCcc
Q 009212 354 TAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--ILQLINLRCAILDEVDI 431 (540)
Q Consensus 354 treLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~--~~~l~~i~~LVlDEad~ 431 (540)
+|+||.|+++.+++......++++..++|+....... ...++|+|+||++|..++++. ...++++++||+||+|.
T Consensus 981 ~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~ 1057 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHL 1057 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGG
T ss_pred hHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhh
Confidence 9999999999998754434678999999987654332 234799999999998888653 23478899999999998
Q ss_pred cCCCCCHHHHHHHH-------HHhCCCCCcEEEEeccCCHHHHHHHHHhCCC---ceEEeCCCccccCCCceeEEEEcCC
Q 009212 432 LFNDEDFEVALQSL-------ISSSPVTAQYLFVTATLPVEIYNKLVEVFPD---CKVVMGPGMHRISPGLEEFLVDCSG 501 (540)
Q Consensus 432 ll~d~~f~~~i~~I-------l~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~---~~~i~~~~~~~~~~~I~q~~v~~~~ 501 (540)
|. + .....++.+ ...++.+.|+|++|||+++. ..+.+|+.. ....+.+... +..+++++.....
T Consensus 1058 l~-d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~ 1131 (1724)
T 4f92_B 1058 IG-G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNI 1131 (1724)
T ss_dssp GG-S-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECC
T ss_pred cC-C-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccC
Confidence 87 4 344444333 34557789999999999853 335556532 2233333222 2234554444332
Q ss_pred CCCCCCchhhHhhhHHHHHHHHHH-hCCCCcEEEEeccc
Q 009212 502 DQESDKTPETAFLNKKSALLQLIE-KSPVSKTIVFCNKK 539 (540)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~ll~-~~~~~rtIIFcnSr 539 (540)
.. ....+......+...+. ....+++||||+||
T Consensus 1132 ~~-----~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR 1165 (1724)
T 4f92_B 1132 SH-----TQTRLLSMAKPVYHAITKHSPKKPVIVFVPSR 1165 (1724)
T ss_dssp CS-----HHHHHHTTHHHHHHHHHHHCSSSCEEEEESSH
T ss_pred CC-----chhhhhhhcchHHHHHHHhcCCCCeeeeCCCH
Confidence 11 11111222222333333 34567999999997
No 47
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=6.2e-25 Score=267.69 Aligned_cols=238 Identities=16% Similarity=0.241 Sum_probs=167.5
Q ss_pred CCCCCcHHHHHHHHHHH-cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVV-EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il-~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
||++++++|.+++|.++ .++|++++||||||||++|.+++++.+.+.... .......+.++|||+|+|+||.|+++.+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~-~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM-DGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT-TSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc-cccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 79999999999999977 578999999999999999999999998754211 1112345789999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc--ccCCCccEEEEeCCcccCCCCCHHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI--LQLINLRCAILDEVDILFNDEDFEVALQ 443 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~--~~l~~i~~LVlDEad~ll~d~~f~~~i~ 443 (540)
++.... .++++..++|+.....+ ...+++|+|+||+++..++++.. ..++.+++|||||+|.+- | .....++
T Consensus 155 ~~~~~~-~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~-d-~RG~~lE 228 (1724)
T 4f92_B 155 GKRLAT-YGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH-D-DRGPVLE 228 (1724)
T ss_dssp HHHHTT-TTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG-S-TTHHHHH
T ss_pred HHHHhh-CCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC-C-ccHHHHH
Confidence 887653 67899999999865432 12458999999999977776533 247899999999999776 4 4555554
Q ss_pred HHHH-------hCCCCCcEEEEeccCCHHHHHHHHHhCCCc----eEEeCCCccccCCCceeEEEEcCCCCCCCCchhhH
Q 009212 444 SLIS-------SSPVTAQYLFVTATLPVEIYNKLVEVFPDC----KVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETA 512 (540)
Q Consensus 444 ~Il~-------~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~----~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~ 512 (540)
.++. .++...|+|++|||+|+. +.+.+|+... ...+.... -+..+++.++.+... .....
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~--RPvpL~~~~~~~~~~-----~~~~~ 299 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSF--RPVPLEQTYVGITEK-----KAIKR 299 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGG--CSSCEEEECCEECCC-----CHHHH
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCC--ccCccEEEEeccCCc-----chhhh
Confidence 4433 456789999999999853 3456777531 22332222 223466666655432 11222
Q ss_pred hhhHHHHHHHHHHh-CCCCcEEEEecccC
Q 009212 513 FLNKKSALLQLIEK-SPVSKTIVFCNKKS 540 (540)
Q Consensus 513 ~~~K~~~L~~ll~~-~~~~rtIIFcnSr~ 540 (540)
+......+...+.+ ...+++||||+||.
T Consensus 300 ~~~~~~~~~~~v~~~~~~~~~LVF~~sR~ 328 (1724)
T 4f92_B 300 FQIMNEIVYEKIMEHAGKNQVLVFVHSRK 328 (1724)
T ss_dssp HHHHHHHHHHHHTTCCSSCCEEEECSSTT
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEECCCHH
Confidence 22222334444443 34568999999984
No 48
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.92 E-value=2.3e-24 Score=251.83 Aligned_cols=163 Identities=20% Similarity=0.284 Sum_probs=140.5
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.+| .|+++|.++|+.++.|+|+++++|||||||++|++++...+. .+.++||++|+++|+.|+++.+
T Consensus 36 ~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------------~g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------------NMTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------------TTCEEEEEESCGGGHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------------cCCeEEEEeCCHHHHHHHHHHH
Confidence 466 489999999999999999999999999999999999887653 2568999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
++++. ++++..++|+.... ..++|+|+||++|.+++......+.++++|||||||++. +.+|...+..+
T Consensus 103 ~~~~~---~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~-d~~~g~~~e~i 171 (997)
T 4a4z_A 103 KETFD---DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVN-DQDRGVVWEEV 171 (997)
T ss_dssp HTTC-----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCC-TTCTTCCHHHH
T ss_pred HHHcC---CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccc-ccchHHHHHHH
Confidence 98753 57889999987643 347999999999999998887788999999999999998 78889899999
Q ss_pred HHhCCCCCcEEEEeccCCHH--HHHHHHH
Q 009212 446 ISSSPVTAQYLFVTATLPVE--IYNKLVE 472 (540)
Q Consensus 446 l~~l~~~~Q~ll~SATlp~~--i~~~l~~ 472 (540)
+..++...|+|++|||+|.. +.+++..
T Consensus 172 i~~l~~~v~iIlLSAT~~n~~ef~~~l~~ 200 (997)
T 4a4z_A 172 IIMLPQHVKFILLSATVPNTYEFANWIGR 200 (997)
T ss_dssp HHHSCTTCEEEEEECCCTTHHHHHHHHHH
T ss_pred HHhcccCCCEEEEcCCCCChHHHHHHHhc
Confidence 99999999999999999744 4444443
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.92 E-value=6.7e-25 Score=247.02 Aligned_cols=148 Identities=20% Similarity=0.213 Sum_probs=113.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
+|. .|+++|..++|.++.|+ |+.++||+|||++|++|++.... .++.++||+|||+||.|+++.+
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l------------~g~~vlVltPTreLA~Q~~e~~ 135 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL------------TGKGVHVVTVNDYLAQRDAENN 135 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT------------TSSCCEEEESSHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHH
Confidence 464 89999999999999998 99999999999999999986542 2467999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhcc------ccCCCccEEEEeCCcccCCCC--
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLINLRCAILDEVDILFNDE-- 436 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~------~~l~~i~~LVlDEad~ll~d~-- 436 (540)
..++.+ .++++.+++||..... +.+..++||+||||++| .++|+.+. ..+..+.++||||||.|+.|+
T Consensus 136 ~~l~~~-lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~ 212 (853)
T 2fsf_A 136 RPLFEF-LGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEAR 212 (853)
T ss_dssp HHHHHH-TTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTT
T ss_pred HHHHHh-cCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCc
Confidence 999886 6899999999987643 33444699999999999 78887653 567899999999999999443
Q ss_pred -------------CHHHHHHHHHHhCCC
Q 009212 437 -------------DFEVALQSLISSSPV 451 (540)
Q Consensus 437 -------------~f~~~i~~Il~~l~~ 451 (540)
+|...+..|+..++.
T Consensus 213 tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 213 TPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CEEEEEEC--------------------
T ss_pred ccccccCCCccchhHHHHHHHHHHhchh
Confidence 367788888888864
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=4.7e-24 Score=240.58 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=138.6
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 285 RQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 285 ~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.+|+ +|+++|..++|.++.|+ |+.++||+|||++|++|++...+. +..++||+||++||.|+++.
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~------------g~~v~VvTpTreLA~Qdae~ 171 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA------------GNGVHIVTVNDYLAKRDSEW 171 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT------------TSCEEEEESSHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh------------CCCeEEEeCCHHHHHHHHHH
Confidence 3688 99999999999999998 999999999999999999754432 34699999999999999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhc------cccCCCccEEEEeCCcccCCC--
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEG------ILQLINLRCAILDEVDILFND-- 435 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~------~~~l~~i~~LVlDEad~ll~d-- 435 (540)
+..++.+ .++++.+++||.....+.. ..+|||+|+||++| .++|+.+ ...+..+.++||||||.|+-|
T Consensus 172 m~~l~~~-lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDea 248 (922)
T 1nkt_A 172 MGRVHRF-LGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEA 248 (922)
T ss_dssp HHHHHHH-TTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGG
T ss_pred HHHHHhh-cCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcC
Confidence 9999886 6899999999987654433 33689999999999 7887664 356788999999999999843
Q ss_pred -------------CCHHHHHHHHHHhCC---------CCCcEE-----------------EEeccCCH
Q 009212 436 -------------EDFEVALQSLISSSP---------VTAQYL-----------------FVTATLPV 464 (540)
Q Consensus 436 -------------~~f~~~i~~Il~~l~---------~~~Q~l-----------------l~SATlp~ 464 (540)
++|...+..|+..++ +.+|++ +||||++.
T Consensus 249 rtPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 249 RTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp GSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred ccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 358899999999998 688998 99999874
No 51
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=7.2e-24 Score=246.85 Aligned_cols=170 Identities=19% Similarity=0.272 Sum_probs=134.6
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|+..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+... ....+.++|||+||++|+.|+++.+
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-------~~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-------PAGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-------CSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc-------cccCCCeEEEEeCCHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999998876432 1123678999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccc-cCCCccEEEEeCCcccCCCCCHHHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGIL-QLINLRCAILDEVDILFNDEDFEVALQS 444 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~-~l~~i~~LVlDEad~ll~d~~f~~~i~~ 444 (540)
++++.. .++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.....+...+..
T Consensus 317 ~~~~~~-~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~ 395 (936)
T 4a2w_A 317 KHHFER-QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTR 395 (936)
T ss_dssp HHHHHT-TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHhcc-cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHH
Confidence 998864 47899999999876665555556789999999999999988766 7889999999999999843345555555
Q ss_pred HHHh----CCCCCcEEEEeccCC
Q 009212 445 LISS----SPVTAQYLFVTATLP 463 (540)
Q Consensus 445 Il~~----l~~~~Q~ll~SATlp 463 (540)
++.. .....|++++|||++
T Consensus 396 ~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 396 YLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHHHhhccCCCcCeEEEecCCcc
Confidence 5443 245689999999995
No 52
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.7e-22 Score=213.57 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=131.6
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|+|+|.++++.++.+ ++++.+|||+|||++|+++++..+.. .+.++|||+|+++|+.|+.+.+.++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 6999999999999998 99999999999999999999987752 25579999999999999999999986
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l 449 (540)
.. ...++..++|+......... ...++|+|+||+.|...+..+.+.+..+++|||||||++.+ ......+...+...
T Consensus 77 ~~-~~~~v~~~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~-~~~~~~~~~~~~~~ 153 (494)
T 1wp9_A 77 NL-PPEKIVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG-NYAYVFIAREYKRQ 153 (494)
T ss_dssp CS-CGGGEEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST-TCHHHHHHHHHHHH
T ss_pred Cc-chhheEEeeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC-CCcHHHHHHHHHhc
Confidence 42 34588888988876654332 33579999999999999988888889999999999999984 44444444455445
Q ss_pred CCCCcEEEEeccCC
Q 009212 450 PVTAQYLFVTATLP 463 (540)
Q Consensus 450 ~~~~Q~ll~SATlp 463 (540)
....+++++|||++
T Consensus 154 ~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 154 AKNPLVIGLTASPG 167 (494)
T ss_dssp CSSCCEEEEESCSC
T ss_pred CCCCeEEEEecCCC
Confidence 56889999999997
No 53
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=4.7e-24 Score=204.06 Aligned_cols=167 Identities=21% Similarity=0.244 Sum_probs=123.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH-HHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ-VLSN 364 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q-i~~~ 364 (540)
.....|+++|.++++.++.++++++.+|||+|||++|+++++..+..... ...+.++||++|+++|+.| +.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK------ASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH------TTCCCCEEEEESSHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc------ccCCCcEEEEECHHHHHHHHHHHH
Confidence 35568999999999999999999999999999999999999988765431 1246689999999999999 7788
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhcc------ccCCCccEEEEeCCcccCCCCC-
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGI------LQLINLRCAILDEVDILFNDED- 437 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~------~~l~~i~~LVlDEad~ll~d~~- 437 (540)
+..+... .+++..++|+.........+..+++|+|+||+.|..++.... ..+..+++|||||||++. +.+
T Consensus 103 ~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~-~~~~ 179 (216)
T 3b6e_A 103 FQPFLKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN-KEAV 179 (216)
T ss_dssp HHHHHTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------C
T ss_pred HHHHhcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc-cCCc
Confidence 8888753 578888888876554444444568999999999999887643 567889999999999998 443
Q ss_pred HHHHHHHHHHhC-------------CCCCcEEEEecc
Q 009212 438 FEVALQSLISSS-------------PVTAQYLFVTAT 461 (540)
Q Consensus 438 f~~~i~~Il~~l-------------~~~~Q~ll~SAT 461 (540)
+...+..++... ....++|++|||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 180 YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 444444443322 147899999998
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=198.76 Aligned_cols=182 Identities=15% Similarity=0.220 Sum_probs=135.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 276 SDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 276 ~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
.+.+.+.+.......++++|.++++.+..|++++++|+||||||.+|.++++..+.... .....++|+++|++
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------~~~~~~~l~~~p~~ 119 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------RAAECNIVVTQPRR 119 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-------CGGGCEEEEEESSH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-------CCCceEEEEeccch
Confidence 44444333333344679999999999999999999999999999999999988765431 12356899999999
Q ss_pred HHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc-CC
Q 009212 356 ELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL-FN 434 (540)
Q Consensus 356 eLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l-l~ 434 (540)
+|+.|+++.+........+..++....... .....+++|+|+||++|++++.. .+.++++|||||||.+ +
T Consensus 120 ~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~- 190 (235)
T 3llm_A 120 ISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDI- 190 (235)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCH-
T ss_pred HHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCc-
Confidence 999999998877654323334433221111 01124589999999999999876 4789999999999996 5
Q ss_pred CCCHH-HHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCc
Q 009212 435 DEDFE-VALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDC 477 (540)
Q Consensus 435 d~~f~-~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~ 477 (540)
+++|. ..++.++...+ +.|+++||||++.+. +.+++.+.
T Consensus 191 ~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~---~~~~~~~~ 230 (235)
T 3llm_A 191 NTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSM---FCEYFFNC 230 (235)
T ss_dssp HHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHH---HHHHTTSC
T ss_pred chHHHHHHHHHHHhhCC-CCeEEEEecCCCHHH---HHHHcCCC
Confidence 56666 46677777664 799999999999876 66777654
No 55
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=7.5e-23 Score=230.19 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=131.0
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH-HHHHHhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV-LSNCRSL 368 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi-~~~l~~l 368 (540)
.|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+...... ..+.++|||+|+++|+.|+ ++.++++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA------SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH------TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999988765321 2346799999999999999 9999998
Q ss_pred hcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHH------HhccccCCCccEEEEeCCcccCCCCCHHHHH
Q 009212 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLI------KEGILQLINLRCAILDEVDILFNDEDFEVAL 442 (540)
Q Consensus 369 ~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll------~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i 442 (540)
+.. .+++..++|+.....+...+...++|+|+||++|.+.+ ....+.+..+++|||||||++.....+...+
T Consensus 81 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 81 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp HTT--TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred cCc--CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 763 48999999998776655556667999999999999888 4455778899999999999987433344444
Q ss_pred HHHHHhC-------------CCCCcEEEEeccCCH
Q 009212 443 QSLISSS-------------PVTAQYLFVTATLPV 464 (540)
Q Consensus 443 ~~Il~~l-------------~~~~Q~ll~SATlp~ 464 (540)
..++... ....|+|++|||++.
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 4333321 146799999999985
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.88 E-value=3e-22 Score=228.02 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=130.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC------CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEE
Q 009212 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEG------KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVI 350 (540)
Q Consensus 277 ~~ll~~L~~~gf~~ptpiQ~~aip~il~G------~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLI 350 (540)
+.+...+..++| .||++|+++|+.++.+ +|++++++||||||++|++|++..+.. +.+++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------g~qvlv 422 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------GFQTAF 422 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------TSCEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------CCeEEE
Confidence 344455677899 9999999999998875 599999999999999999999988743 467999
Q ss_pred EccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHhhcC-CCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 351 LAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 351 L~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q---~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
|+||++||.|+++.+++++.. .++++..++|+....+. +..+.. .++|+|+||+.|.+ .+.+.+++++||
T Consensus 423 laPtr~La~Q~~~~l~~~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVI 496 (780)
T 1gm5_A 423 MVPTSILAIQHYRRTVESFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVII 496 (780)
T ss_dssp ECSCHHHHHHHHHHHHHHHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEE
T ss_pred EeCcHHHHHHHHHHHHHHhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEe
Confidence 999999999999999998763 57899999999876553 334444 49999999987733 566889999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 427 DEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
||+|++. ... ...+......+|++++|||+.+...
T Consensus 497 DEaHr~g-~~q-----r~~l~~~~~~~~vL~mSATp~p~tl 531 (780)
T 1gm5_A 497 DEQHRFG-VKQ-----REALMNKGKMVDTLVMSATPIPRSM 531 (780)
T ss_dssp ESCCCC-----------CCCCSSSSCCCEEEEESSCCCHHH
T ss_pred cccchhh-HHH-----HHHHHHhCCCCCEEEEeCCCCHHHH
Confidence 9999974 211 1122223347899999999765543
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.86 E-value=1.3e-20 Score=223.26 Aligned_cols=226 Identities=19% Similarity=0.176 Sum_probs=158.5
Q ss_pred cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHc----CC--cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 273 LGCSDYMIESLKR-QNFLRPSQIQAMAFPPVVE----GK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 273 l~L~~~ll~~L~~-~gf~~ptpiQ~~aip~il~----G~--dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
++++....+.+.. ++|. +||+|.++|+.++. |+ |++++++||+|||++|+++++..+. .+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------------~g 652 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------------NH 652 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------------TT
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------------hC
Confidence 3456666666644 5775 79999999999886 66 9999999999999999999887542 35
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHhhcC-CCcEEEeChHHHHHHHHhccccCCCc
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQE-GVDVLIATPGRFMFLIKEGILQLINL 421 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q---~~~l~~-~~dIlVaTP~rL~~ll~~~~~~l~~i 421 (540)
.+++||+||++||.|+++.+++... +.++++..+++.....++ +..+.. .++|+|+||+.| .+.+.+.++
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l 726 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFA-NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDL 726 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHST-TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhh-cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCcccccc
Confidence 6899999999999999999998765 256788888876654433 344444 499999999765 345678899
Q ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCC
Q 009212 422 RCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSG 501 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~ 501 (540)
++|||||||++. .. ...++..++...|++++|||+++.........+.+...+..+.. ....+..++....
T Consensus 727 ~lvIiDEaH~~g--~~----~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~~~- 797 (1151)
T 2eyq_A 727 GLLIVDEEHRFG--VR----HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVREYD- 797 (1151)
T ss_dssp EEEEEESGGGSC--HH----HHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEECC-
T ss_pred ceEEEechHhcC--hH----HHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC--CccccEEEEecCC-
Confidence 999999999964 22 23444445567899999999877666666555555554433221 2223444444322
Q ss_pred CCCCCCchhhHhhhHHHHHHHHHHh-CCCCcEEEEecccC
Q 009212 502 DQESDKTPETAFLNKKSALLQLIEK-SPVSKTIVFCNKKS 540 (540)
Q Consensus 502 ~~~~~~~~~~~~~~K~~~L~~ll~~-~~~~rtIIFcnSr~ 540 (540)
+......+++. ...+++|||||+++
T Consensus 798 --------------~~~i~~~il~~l~~g~qvlvf~~~v~ 823 (1151)
T 2eyq_A 798 --------------SMVVREAILREILRGGQVYYLYNDVE 823 (1151)
T ss_dssp --------------HHHHHHHHHHHHTTTCEEEEECCCSS
T ss_pred --------------HHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 11122222222 24579999999874
No 58
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.84 E-value=2.9e-22 Score=223.38 Aligned_cols=170 Identities=18% Similarity=0.114 Sum_probs=124.4
Q ss_pred ccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 009212 270 FKE-LGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (540)
Q Consensus 270 F~~-l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~a 348 (540)
|.. +++++.++++|... +..++|+|+++++.++.|+|++++||||||||++|++|+++.+... ++++
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----------~~~v 218 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-----------RLRT 218 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----------TCCE
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCeE
Confidence 444 56777766666543 5789999999999999999999999999999999999999988642 5789
Q ss_pred EEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 349 LIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
|||+|||+||.|+++.++.+ .+. +.+.. .. ..-..+..|.+.|.+.+...+... ..+.++++|||||
T Consensus 219 Lvl~PtreLa~Qi~~~l~~~-------~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDE 285 (618)
T 2whx_A 219 LILAPTRVVAAEMEEALRGL-------PIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDE 285 (618)
T ss_dssp EEEESSHHHHHHHHHHTTTS-------CEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEES
T ss_pred EEEcChHHHHHHHHHHhcCC-------cee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEEC
Confidence 99999999999999888632 222 11111 00 001123456678888877655543 4588999999999
Q ss_pred CcccCCCCCHHHHHHHHHHhCC-CCCcEEEEeccCCHHH
Q 009212 429 VDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEI 466 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SATlp~~i 466 (540)
||+| +.+|...+..|+..++ ..+|+++||||++..+
T Consensus 286 ah~~--~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~ 322 (618)
T 2whx_A 286 AHFT--DPCSVAARGYISTRVEMGEAAAIFMTATPPGST 322 (618)
T ss_dssp TTCC--SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCC
T ss_pred CCCC--CccHHHHHHHHHHHhcccCccEEEEECCCchhh
Confidence 9998 5788888888887775 6799999999998764
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.84 E-value=2.2e-21 Score=208.53 Aligned_cols=153 Identities=20% Similarity=0.150 Sum_probs=114.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCcE-EEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVVEGKSC-ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il~G~dv-lv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
|+..|+|+|+ +||.++.++++ +++||||||||++|++|++..+... ++++||++|||+||.|+++.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-----------~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-----------RLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-----------CCcEEEECCCHHHHHHHHHHh
Confidence 7889999986 79999999887 8899999999999999999877542 578999999999999999988
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
..+ .+......... ....+..|.++|++.+...+... ..+.++++|||||||++ +..+...+..+
T Consensus 69 ~g~-------~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~--~~~~~~~~~~~ 133 (451)
T 2jlq_A 69 RGL-------PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT--DPCSVAARGYI 133 (451)
T ss_dssp TTS-------CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC--SHHHHHHHHHH
T ss_pred cCc-------eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC--CcchHHHHHHH
Confidence 533 22211111110 11234579999999998777653 56889999999999977 34455444444
Q ss_pred HHh-CCCCCcEEEEeccCCHHH
Q 009212 446 ISS-SPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 446 l~~-l~~~~Q~ll~SATlp~~i 466 (540)
... .+..+|+++||||+|..+
T Consensus 134 ~~~~~~~~~~~i~~SAT~~~~~ 155 (451)
T 2jlq_A 134 STRVEMGEAAAIFMTATPPGST 155 (451)
T ss_dssp HHHHHTTSCEEEEECSSCTTCC
T ss_pred HHhhcCCCceEEEEccCCCccc
Confidence 332 345799999999998754
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.84 E-value=5.9e-20 Score=209.64 Aligned_cols=240 Identities=17% Similarity=0.185 Sum_probs=162.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCC
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVE-GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGS 345 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~-G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~ 345 (540)
..+|.++++++.+.+.|...+ ..|+++|+++|+.++. +++++++||||||||+ ++|++.. .... ....+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~--~~~~-----~~~~g 140 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVL--FDEM-----PHLEN 140 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHH--HHHC-----GGGGT
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHH--Hhcc-----ccCCC
Confidence 467999999999999999887 7899999999998775 5689999999999999 5776622 2111 01135
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEE
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAI 425 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LV 425 (540)
.+++|++|+|+|+.|+++.+...........++....... ......+|+|+||+++...+... ..+.++++||
T Consensus 141 ~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 141 TQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred ceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 6899999999999999987765433212222222111111 11245799999999999877664 4588999999
Q ss_pred EeCCcc-cCCCCC-HHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCceEEeCCCccccCCCceeEEEEcCCCC
Q 009212 426 LDEVDI-LFNDED-FEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQ 503 (540)
Q Consensus 426 lDEad~-ll~d~~-f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~ 503 (540)
|||+|. ++ +.. +...+..+.... ...|++++|||++.+ .+..++.+..++..... ...++++|+.....+
T Consensus 214 lDEah~R~l-d~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~ 285 (773)
T 2xau_A 214 LDEAHERTL-ATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGR---TYPVELYYTPEFQRD 285 (773)
T ss_dssp ECSGGGCCH-HHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCC---CCCEEEECCSSCCSC
T ss_pred ecCcccccc-chHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCc---ccceEEEEecCCchh
Confidence 999995 65 322 334455555554 478999999999754 35667766555443322 223556555443321
Q ss_pred CCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 504 ESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 504 ~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.....+..+.+++.....+++||||+++
T Consensus 286 --------~~~~~l~~l~~~~~~~~~g~iLVF~~~~ 313 (773)
T 2xau_A 286 --------YLDSAIRTVLQIHATEEAGDILLFLTGE 313 (773)
T ss_dssp --------HHHHHHHHHHHHHHHSCSCEEEEECSCH
T ss_pred --------HHHHHHHHHHHHHHhcCCCCEEEECCCH
Confidence 0112344555666565678999999986
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.84 E-value=9e-21 Score=205.65 Aligned_cols=155 Identities=15% Similarity=0.135 Sum_probs=128.8
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..|+++|.++++.++.+++++++++||+|||++|++++...+... ..++|||+|+++|+.|+++.++++
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----------~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----------EGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-----------SSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-----------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999988776531 348999999999999999999988
Q ss_pred hcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 369 ~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
+.+ ....+..++|+.....+ +...++|+|+||+.|.. .....+.++++|||||||++. . ..+..+++.
T Consensus 181 ~~~-~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~-~----~~~~~il~~ 248 (510)
T 2oca_A 181 RLF-SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT-G----KSISSIISG 248 (510)
T ss_dssp TSS-CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCC-H----HHHHHHGGG
T ss_pred hcC-CccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCC-c----ccHHHHHHh
Confidence 653 45788888888776554 45678999999997543 334557789999999999987 2 457778888
Q ss_pred CCCCCcEEEEeccCCHHH
Q 009212 449 SPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 449 l~~~~Q~ll~SATlp~~i 466 (540)
++...+++++|||++...
T Consensus 249 ~~~~~~~l~lSATp~~~~ 266 (510)
T 2oca_A 249 LNNCMFKFGLSGSLRDGK 266 (510)
T ss_dssp CTTCCEEEEEESCGGGCS
T ss_pred cccCcEEEEEEeCCCCCc
Confidence 877899999999997553
No 62
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=1.5e-20 Score=189.08 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=124.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
-.|+++|.++++.++.+++.+++++||+|||+++++++...+... ..++|||+||++|+.|+++.++++
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-----------~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-----------EGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-----------SSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-----------CCeEEEEECCHHHHHHHHHHHHHh
Confidence 379999999999999888999999999999999988887765431 347999999999999999999998
Q ss_pred hcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 369 SKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 369 ~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
+.. ....+..++++..... .....++|+|+||+.+... ....+..+++||+||||++. + ..+..++..
T Consensus 181 ~~~-~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~-~----~~~~~il~~ 248 (282)
T 1rif_A 181 RLF-SHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT-G----KSISSIISG 248 (282)
T ss_dssp TSC-CGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC-H----HHHHHHTTT
T ss_pred ccc-ccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC-c----ccHHHHHHH
Confidence 653 4567788888765432 2235689999999877433 23346788999999999997 2 377788888
Q ss_pred CCCCCcEEEEeccCCHH
Q 009212 449 SPVTAQYLFVTATLPVE 465 (540)
Q Consensus 449 l~~~~Q~ll~SATlp~~ 465 (540)
+...+|++++|||++..
T Consensus 249 ~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 249 LNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp CTTCCEEEEECSSCCTT
T ss_pred hhcCCeEEEEeCCCCCc
Confidence 87789999999999754
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.83 E-value=3.8e-20 Score=198.79 Aligned_cols=136 Identities=21% Similarity=0.119 Sum_probs=112.3
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|+|+|.++++.++.+++++++++||+|||++|++++... +.++|||+|+++|+.|+++.++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 6999999999999999999999999999999999988753 346999999999999999999984
Q ss_pred cCCCCce-EEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 370 KCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 370 ~~~~~l~-v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
++. +..++|+... .++|+|+||+.+...+..- ..++++|||||||++. +..|.. +++.
T Consensus 157 ----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~-~~~~~~----~~~~ 215 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLP-AESYVQ----IAQM 215 (472)
T ss_dssp ----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTT-STTTHH----HHHT
T ss_pred ----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCC-ChHHHH----HHHh
Confidence 356 7777777642 4799999999987665421 2458999999999998 566654 4555
Q ss_pred CCCCCcEEEEeccCC
Q 009212 449 SPVTAQYLFVTATLP 463 (540)
Q Consensus 449 l~~~~Q~ll~SATlp 463 (540)
++ ..+++++|||+.
T Consensus 216 ~~-~~~~l~lSATp~ 229 (472)
T 2fwr_A 216 SI-APFRLGLTATFE 229 (472)
T ss_dssp CC-CSEEEEEESCCC
T ss_pred cC-CCeEEEEecCcc
Confidence 54 678999999986
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.82 E-value=8.3e-21 Score=211.75 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=116.4
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhc
Q 009212 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (540)
Q Consensus 291 ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~ 370 (540)
+.+.|+++++.+..++|++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~---------------g~~vLVl~PTReLA~Qia~~l~~~~g 282 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ---------------GYKVLVLNPSVAATLGFGAYMSKAHG 282 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT---------------TCCEEEEESCHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC---------------CCeEEEEcchHHHHHHHHHHHHHHhC
Confidence 344555555566688899999999999999999988751 44799999999999999998877643
Q ss_pred CCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCC
Q 009212 371 CGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSP 450 (540)
Q Consensus 371 ~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~ 450 (540)
..+...+|+.. +..+++|+|+||++| +....+.+.++++|||||||++ +++|...+..|++.++
T Consensus 283 ----~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l--~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 283 ----IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST--DSTTILGIGTVLDQAE 346 (666)
T ss_dssp ----CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC--SHHHHHHHHHHHHHTT
T ss_pred ----CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc--CccHHHHHHHHHHhhh
Confidence 34566677654 356789999999997 5666778889999999999655 5789999999999998
Q ss_pred CCCc--EEEEeccCCHH
Q 009212 451 VTAQ--YLFVTATLPVE 465 (540)
Q Consensus 451 ~~~Q--~ll~SATlp~~ 465 (540)
..+| ++++|||++..
T Consensus 347 ~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 347 TAGARLVVLATATPPGS 363 (666)
T ss_dssp TTTCSEEEEEESSCTTC
T ss_pred hcCCceEEEECCCCCcc
Confidence 7777 67779999873
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.80 E-value=3.1e-22 Score=225.03 Aligned_cols=158 Identities=22% Similarity=0.232 Sum_probs=105.8
Q ss_pred HHHCCCC-----CCcHHHH-----HHHHHHH------cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCC
Q 009212 283 LKRQNFL-----RPSQIQA-----MAFPPVV------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSP 346 (540)
Q Consensus 283 L~~~gf~-----~ptpiQ~-----~aip~il------~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p 346 (540)
|..+||. .||++|+ ++||.++ .|+|++++||||||||++|++|+++.+... ++
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----------~~ 271 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----------RL 271 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----------TC
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----------CC
Confidence 3444555 8999999 9999988 899999999999999999999999887642 57
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
++|||+||++||.|+++.++.+. +. ...+.... .-..+.-+-+.+.+.+...+.. ...+.++++|||
T Consensus 272 ~~lilaPTr~La~Q~~~~l~~~~-----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvVi 338 (673)
T 2wv9_A 272 RTAVLAPTRVVAAEMAEALRGLP-----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVM 338 (673)
T ss_dssp CEEEEESSHHHHHHHHHHTTTSC-----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEE
T ss_pred cEEEEccHHHHHHHHHHHHhcCC-----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEE
Confidence 89999999999999999887552 11 11100000 0000111223333333333332 246889999999
Q ss_pred eCCcccCCCCCHHHHHHHHHHhCC-CCCcEEEEeccCCHHH
Q 009212 427 DEVDILFNDEDFEVALQSLISSSP-VTAQYLFVTATLPVEI 466 (540)
Q Consensus 427 DEad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SATlp~~i 466 (540)
||||++ +..+...+..+...++ ..+|+++||||++..+
T Consensus 339 DEaH~~--~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i 377 (673)
T 2wv9_A 339 DEAHFT--DPASIAARGYIATRVEAGEAAAIFMTATPPGTS 377 (673)
T ss_dssp ESTTCC--CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred eCCccc--CccHHHHHHHHHHhccccCCcEEEEcCCCChhh
Confidence 999998 2344444444444442 5799999999998664
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.78 E-value=5.8e-21 Score=204.77 Aligned_cols=131 Identities=21% Similarity=0.252 Sum_probs=95.5
Q ss_pred HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEe
Q 009212 302 VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~ 381 (540)
+++|+|++++||||||||++|++|+++.+... ++++||++||++||.|+++.++.+. +....
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----------~~~~lil~Ptr~La~Q~~~~l~~~~-------v~~~~ 66 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR-----------RLRTLVLAPTRVVLSEMKEAFHGLD-------VKFHT 66 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHTTTSC-------EEEES
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----------CCeEEEEcchHHHHHHHHHHHhcCC-------eEEec
Confidence 57899999999999999999999999987642 5689999999999999999887542 21111
Q ss_pred CCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc--------cccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCC
Q 009212 382 GGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--------ILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVT 452 (540)
Q Consensus 382 Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~--------~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~ 452 (540)
+.. -.|+||+++.+++..+ ...+.++++|||||||++ +..+...+..+.... +..
T Consensus 67 ~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~--~~~~~~~~~~~~~~~~~~~ 130 (440)
T 1yks_A 67 QAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL--DPASIAARGWAAHRARANE 130 (440)
T ss_dssp SCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC--SHHHHHHHHHHHHHHHTTS
T ss_pred ccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc--CcchHHHHHHHHHHhccCC
Confidence 110 0377787665433322 234789999999999998 344544444443333 357
Q ss_pred CcEEEEeccCCHHH
Q 009212 453 AQYLFVTATLPVEI 466 (540)
Q Consensus 453 ~Q~ll~SATlp~~i 466 (540)
+|+++||||+++.+
T Consensus 131 ~~~l~~SAT~~~~~ 144 (440)
T 1yks_A 131 SATILMTATPPGTS 144 (440)
T ss_dssp CEEEEECSSCTTCC
T ss_pred ceEEEEeCCCCchh
Confidence 99999999998764
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.77 E-value=8.8e-19 Score=193.88 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=99.4
Q ss_pred CCCcHHHHHHHHHHHc----C-CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH-
Q 009212 289 LRPSQIQAMAFPPVVE----G-KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL- 362 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~----G-~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~- 362 (540)
..|+++|.++++.++. | ++++++++||+|||++++ +++..+..... ........+++|||+|+++|+.|++
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~-~~~~~l~~~~~--~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAF-QISWKLWSARW--NRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH-HHHHHHHHTTC--CSSCSSSCCCEEEEEC----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHH-HHHHHHHhccc--ccccccCCCeEEEEeCCHHHHHHHHH
Confidence 3799999999998875 4 679999999999999965 44444443210 0011225788999999999999998
Q ss_pred HHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHh----ccccCCCccEEEEeCCcccCCCCCH
Q 009212 363 SNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKE----GILQLINLRCAILDEVDILFNDEDF 438 (540)
Q Consensus 363 ~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~----~~~~l~~i~~LVlDEad~ll~d~~f 438 (540)
+.++.++. .+..+.++ ....+.+|+|+||++|...+.. ..+....+++|||||||++. .. .
T Consensus 254 ~~~~~~~~-----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~-~~-~ 318 (590)
T 3h1t_A 254 KTFTPFGD-----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGS-AR-D 318 (590)
T ss_dssp -CCTTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHHhcch-----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccc-cc-c
Confidence 77776542 23333322 2335689999999999887642 33456779999999999997 32 2
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhCCCce
Q 009212 439 EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVFPDCK 478 (540)
Q Consensus 439 ~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l~~~~ 478 (540)
...+..++..++ ..++++||||...........++..+.
T Consensus 319 ~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~ 357 (590)
T 3h1t_A 319 NSNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPI 357 (590)
T ss_dssp ---CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCS
T ss_pred hHHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCce
Confidence 355677777776 578999999986433333445555433
No 68
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.76 E-value=2.2e-18 Score=184.17 Aligned_cols=136 Identities=23% Similarity=0.192 Sum_probs=98.1
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|+|+++++|||||||++|++|+++.+... ++++|||+||++||.|+++.+. ++.+....|+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----------g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~ 62 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-----------RLRTVILAPTRVVASEMYEALR-------GEPIRYMTPA 62 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecC
Confidence 478999999999999999999999776542 5689999999999999998775 2344444443
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccC
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATL 462 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATl 462 (540)
... .-..+.-+.+.|.+.+...+.. ...+.++++|||||||++. ..+...+..+.... +..+|++++|||+
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~--~~~~~~~~~l~~~~~~~~~~~l~~SAT~ 134 (431)
T 2v6i_A 63 VQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD--PASVAARGYIETRVSMGDAGAIFMTATP 134 (431)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS--HHHHHHHHHHHHHHHTTSCEEEEEESSC
T ss_pred ccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC--ccHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 221 1112345677788888766655 5568899999999999973 45555555554443 5689999999999
Q ss_pred CHH
Q 009212 463 PVE 465 (540)
Q Consensus 463 p~~ 465 (540)
++.
T Consensus 135 ~~~ 137 (431)
T 2v6i_A 135 PGT 137 (431)
T ss_dssp TTC
T ss_pred Ccc
Confidence 864
No 69
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.76 E-value=1.2e-18 Score=196.46 Aligned_cols=132 Identities=23% Similarity=0.220 Sum_probs=113.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
+|| +|+++|..++|.++.|+ |+.++||+|||++|++|++...+ .+..++||+||++||.|.++.+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL------------~G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL------------TGKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT------------TCSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH------------hCCCEEEEeCCHHHHHHHHHHH
Confidence 699 99999999999999998 99999999999999999975442 1446999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHH-HHHHHhcc------ccCC---CccEEEEeCCcccCCC
Q 009212 366 RSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRF-MFLIKEGI------LQLI---NLRCAILDEVDILFND 435 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL-~~ll~~~~------~~l~---~i~~LVlDEad~ll~d 435 (540)
..+..+ .++++.+++||....... ...+|||+|+||++| .++|+.+. ..+. .+.++||||+|.|+-+
T Consensus 141 ~~l~~~-lGLsv~~i~Gg~~~~~r~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD 217 (997)
T 2ipc_A 141 GPVYRG-LGLSVGVIQHASTPAERR--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID 217 (997)
T ss_dssp HHHHHT-TTCCEEECCTTCCHHHHH--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS
T ss_pred HHHHHh-cCCeEEEEeCCCCHHHHH--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh
Confidence 999986 789999999998754433 334699999999999 88888763 4577 8999999999999844
No 70
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.75 E-value=2.5e-17 Score=162.24 Aligned_cols=139 Identities=21% Similarity=0.138 Sum_probs=110.5
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..|+++|.+++..++.++++++++|||+|||++++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 37999999999999999999999999999999988776542 346999999999999999999884
Q ss_pred hcCCCCce-EEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 369 SKCGVPFR-SMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 369 ~~~~~~l~-v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
++. +..+.|+... ..+|+|+|++.+...+.. ....+++|||||||++. +..+. .+++
T Consensus 157 -----~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~-~~~~~----~i~~ 214 (237)
T 2fz4_A 157 -----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLP-AESYV----QIAQ 214 (237)
T ss_dssp -----CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCC-TTTHH----HHHH
T ss_pred -----CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCC-ChHHH----HHHH
Confidence 346 7777776542 468999999998765542 12468999999999998 55554 3555
Q ss_pred hCCCCCcEEEEeccCCHH
Q 009212 448 SSPVTAQYLFVTATLPVE 465 (540)
Q Consensus 448 ~l~~~~Q~ll~SATlp~~ 465 (540)
.++ ..+++++|||++..
T Consensus 215 ~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 215 MSI-APFRLGLTATFERE 231 (237)
T ss_dssp TCC-CSEEEEEEESCC--
T ss_pred hcc-CCEEEEEecCCCCC
Confidence 554 67899999998753
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.74 E-value=1.6e-18 Score=186.78 Aligned_cols=137 Identities=21% Similarity=0.216 Sum_probs=95.1
Q ss_pred HHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEE
Q 009212 300 PPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV 379 (540)
Q Consensus 300 p~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~ 379 (540)
..+..|++++++||||||||++|++|+++.+... ++++||++|||+||.|+++.++.+ .+..
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-----------~~~~lvl~Ptr~La~Q~~~~l~g~-------~v~~ 77 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-----------RLRTAVLAPTRVVAAEMAEALRGL-------PVRY 77 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-----------TCCEEEEECSHHHHHHHHHHTTTS-------CEEE
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----------CCcEEEECchHHHHHHHHHHhcCc-------eEeE
Confidence 3456789999999999999999999999987642 568999999999999999988732 1211
Q ss_pred EeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc-----CCCCCHHHHHHHHHHhCCCCCc
Q 009212 380 VTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL-----FNDEDFEVALQSLISSSPVTAQ 454 (540)
Q Consensus 380 l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l-----l~d~~f~~~i~~Il~~l~~~~Q 454 (540)
..+..... -..+.-+.+.|.+.+...+... ..+.++++|||||||++ + ..+|...+ . .....|
T Consensus 78 ~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~-~~~~~~~~---~--~~~~~~ 145 (459)
T 2z83_A 78 QTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIA-ARGYIATK---V--ELGEAA 145 (459)
T ss_dssp CC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHH-HHHHHHHH---H--HTTSCE
T ss_pred EecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhH-HHHHHHHH---h--ccCCcc
Confidence 11111100 0123457788888877665543 56889999999999984 2 22232221 1 135799
Q ss_pred EEEEeccCCHHH
Q 009212 455 YLFVTATLPVEI 466 (540)
Q Consensus 455 ~ll~SATlp~~i 466 (540)
+++||||+|..+
T Consensus 146 ~il~SAT~~~~~ 157 (459)
T 2z83_A 146 AIFMTATPPGTT 157 (459)
T ss_dssp EEEECSSCTTCC
T ss_pred EEEEEcCCCcch
Confidence 999999998654
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.70 E-value=5.9e-17 Score=189.30 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=123.1
Q ss_pred HHHHHHHHHCC-------CCCCcHHHHHHHHHHHc--------------CCcEEEEcCCCCCchhhcHHHHHHHHHHHHh
Q 009212 277 DYMIESLKRQN-------FLRPSQIQAMAFPPVVE--------------GKSCILADQSGSGKTLAYLLPVIQRLRQEEL 335 (540)
Q Consensus 277 ~~ll~~L~~~g-------f~~ptpiQ~~aip~il~--------------G~dvlv~ApTGSGKTlayllpil~~l~~~~~ 335 (540)
+.++..|...- ...|+|+|.+|++.++. +++.+++++||||||+++ ++++..+..
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--- 326 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--- 326 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT---
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh---
Confidence 44555555531 23599999999999875 378999999999999997 666654421
Q ss_pred hccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhc
Q 009212 336 QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEG 414 (540)
Q Consensus 336 ~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~ 414 (540)
.....++|||+|+++|+.|+.+.+..+... .+.++.........+. .+++|+|+||++|..++...
T Consensus 327 ------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~ 393 (1038)
T 2w00_A 327 ------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAE 393 (1038)
T ss_dssp ------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHC
T ss_pred ------cCCCceEEEEeCcHHHHHHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcc
Confidence 123468999999999999999999987642 1234455555555553 46899999999999988754
Q ss_pred c--ccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCH
Q 009212 415 I--LQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPV 464 (540)
Q Consensus 415 ~--~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~ 464 (540)
. ..+....+||+||||++. +......|+..++ ..++++||||+..
T Consensus 394 ~~~~~~~~~~lvIiDEAHrs~----~~~~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 394 SDLPVYNQQVVFIFDECHRSQ----FGEAQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp CCCGGGGSCEEEEEESCCTTH----HHHHHHHHHHHCS-SEEEEEEESSCCC
T ss_pred cchhccccccEEEEEccchhc----chHHHHHHHHhCC-cccEEEEeCCccc
Confidence 2 235577899999999986 3344567777776 5899999999863
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.59 E-value=3.5e-15 Score=164.15 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=101.4
Q ss_pred CCCCCcHHHHHHHHH----HHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPP----VVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 287 gf~~ptpiQ~~aip~----il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
|| .|+|.|.+++.. +..|+|+++.||||+|||++|++|++.. ++++||++||++|+.|+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~---------------~~~v~i~~pt~~l~~q~~ 64 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV---------------KPKVLFVVRTHNEFYPIY 64 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH---------------CSEEEEEESSGGGHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC---------------CCeEEEEcCCHHHHHHHH
Confidence 34 689999997764 5579999999999999999999999971 468999999999999999
Q ss_pred HHHHhhhcCCCCceEEEEeCCcch---------------------------------HHHH------------------H
Q 009212 363 SNCRSLSKCGVPFRSMVVTGGFRQ---------------------------------KTQL------------------E 391 (540)
Q Consensus 363 ~~l~~l~~~~~~l~v~~l~Gg~~~---------------------------------~~q~------------------~ 391 (540)
+.+..+... .++++.++.|+.+. .... +
T Consensus 65 ~~~~~l~~~-~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar 143 (551)
T 3crv_A 65 RDLTKIREK-RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLL 143 (551)
T ss_dssp HHHTTCCCS-SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHhhh-cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHH
Confidence 999998764 36788877774321 1111 2
Q ss_pred hhcCCCcEEEeChHHHHHHHHhccccC-CCccEEEEeCCcccCC
Q 009212 392 NLQEGVDVLIATPGRFMFLIKEGILQL-INLRCAILDEVDILFN 434 (540)
Q Consensus 392 ~l~~~~dIlVaTP~rL~~ll~~~~~~l-~~i~~LVlDEad~ll~ 434 (540)
.....+||||+|+..|.+...+..+.+ ....+|||||||.|.+
T Consensus 144 ~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 144 NSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 223468999999999997654433322 4677899999999983
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.58 E-value=9.9e-15 Score=157.70 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=105.9
Q ss_pred CCCcHHHHHHHHHH----HcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPV----VEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 289 ~~ptpiQ~~aip~i----l~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
..|+|+|.+++..+ ..++++|++.+||+|||+.++..+ ..+... ....++|||||+ .|+.|+.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~---------~~~~~~LIv~P~-~l~~qw~~e 104 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKE---------NELTPSLVICPL-SVLKNWEEE 104 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHT---------TCCSSEEEEECS-TTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhc---------CCCCCEEEEccH-HHHHHHHHH
Confidence 36999999999876 467899999999999999965444 443322 224579999994 699999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHH
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQS 444 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~ 444 (540)
+++++. .+++.++.|+... .....++|+|+|++.+..... +....+++||+||||++. +.. .....
T Consensus 105 ~~~~~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~k-n~~--~~~~~ 170 (500)
T 1z63_A 105 LSKFAP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIK-NPQ--TKIFK 170 (500)
T ss_dssp HHHHCT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGS-CTT--SHHHH
T ss_pred HHHHCC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccC-CHh--HHHHH
Confidence 998863 4677776666532 112357999999999865433 233467899999999997 332 22334
Q ss_pred HHHhCCCCCcEEEEeccC
Q 009212 445 LISSSPVTAQYLFVTATL 462 (540)
Q Consensus 445 Il~~l~~~~Q~ll~SATl 462 (540)
.+..++ ..+.+++|||.
T Consensus 171 ~l~~l~-~~~~l~LTaTP 187 (500)
T 1z63_A 171 AVKELK-SKYRIALTGTP 187 (500)
T ss_dssp HHHTSC-EEEEEEECSSC
T ss_pred HHHhhc-cCcEEEEecCC
Confidence 444454 46789999997
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.52 E-value=1.8e-14 Score=161.86 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=113.6
Q ss_pred cccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEE
Q 009212 269 SFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRV 348 (540)
Q Consensus 269 ~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~a 348 (540)
.|..+. ..+.++++.++.+ |. |.+.....+.|++++++||||||||+ ++++.+... ..+
T Consensus 124 ~fp~~e-~~d~l~~i~dl~~--p~--~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~------------~~g 182 (677)
T 3rc3_A 124 IFPVLD-CKDDLRKISDLRI--PP--NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA------------KSG 182 (677)
T ss_dssp HCGGGG-CHHHHHHHTBCCC--GG--GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS------------SSE
T ss_pred hCCCcC-CHHHHHHHhhccC--hh--hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc------------CCe
Confidence 454444 4555566655433 33 33334456789999999999999998 455555432 236
Q ss_pred EEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeC
Q 009212 349 VILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDE 428 (540)
Q Consensus 349 LIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDE 428 (540)
+|++|||+||.|+++.++++ ++.+.+++|+..... ..-....+++++|++.+. ....+++|||||
T Consensus 183 l~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDE 247 (677)
T 3rc3_A 183 VYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDE 247 (677)
T ss_dssp EEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECS
T ss_pred EEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEec
Confidence 99999999999999999876 357888888865410 000112678888875431 346789999999
Q ss_pred CcccCCCCCHHHHHHHHHHhCC-CCCcEEEEeccC
Q 009212 429 VDILFNDEDFEVALQSLISSSP-VTAQYLFVTATL 462 (540)
Q Consensus 429 ad~ll~d~~f~~~i~~Il~~l~-~~~Q~ll~SATl 462 (540)
||+++ +.+|...+..++..++ ...|++++|||.
T Consensus 248 aH~l~-d~~~g~~~~~~l~~l~~~~i~il~~SAT~ 281 (677)
T 3rc3_A 248 IQMIR-DPARGWAWTRALLGLCAEEVHLCGEPAAI 281 (677)
T ss_dssp GGGGG-CTTTHHHHHHHHHHCCEEEEEEEECGGGH
T ss_pred ceecC-CccchHHHHHHHHccCccceEEEeccchH
Confidence 99998 7889999999988887 678999999995
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.48 E-value=4.2e-14 Score=155.32 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=86.9
Q ss_pred CCCCCCcHHHHHHHH----HHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFP----PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip----~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
.|| .|+|+|.+++. .+..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------------~~~~~~~~~t~~l~~q~ 67 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------------KKKVLIFTRTHSQLDSI 67 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------------TCEEEEEESCHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------------CCcEEEEcCCHHHHHHH
Confidence 467 89999999865 45689999999999999999999998642 35799999999999999
Q ss_pred HHHHHhhhcCCCCceEEEEeCCcch-----------------------------------------------HHHHHhhc
Q 009212 362 LSNCRSLSKCGVPFRSMVVTGGFRQ-----------------------------------------------KTQLENLQ 394 (540)
Q Consensus 362 ~~~l~~l~~~~~~l~v~~l~Gg~~~-----------------------------------------------~~q~~~l~ 394 (540)
.+.+..+. +++..+.|.... ....+...
T Consensus 68 ~~~~~~l~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~ 142 (540)
T 2vl7_A 68 YKNAKLLG-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANL 142 (540)
T ss_dssp HHHHGGGT-----CCEEEC---------------------------------------------------------CTTG
T ss_pred HHHHHhcC-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHh
Confidence 99888752 233333322110 00011112
Q ss_pred CCCcEEEeChHHHHHHHHhccc-------cCCCccEEEEeCCcccC
Q 009212 395 EGVDVLIATPGRFMFLIKEGIL-------QLINLRCAILDEVDILF 433 (540)
Q Consensus 395 ~~~dIlVaTP~rL~~ll~~~~~-------~l~~i~~LVlDEad~ll 433 (540)
..++|||+|+..|.+....+.+ .+....++||||||.|.
T Consensus 143 ~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 143 KDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp GGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred hcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 3579999999999864433221 24567899999999994
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.48 E-value=9.5e-14 Score=162.19 Aligned_cols=155 Identities=21% Similarity=0.128 Sum_probs=105.0
Q ss_pred CCCcHHHHHHHHHHHc--CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCR 366 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~--G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~ 366 (540)
..|+|+|.+++..++. +.++|++.+||+|||++++..+...+.. ....++|||||+ .|+.|+...+.
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----------g~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----------GAAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----------SSCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----------CCCCeEEEEeCH-HHHHHHHHHHH
Confidence 3789999999988776 4589999999999999987777665532 223469999999 99999999997
Q ss_pred hhhcCCCCceEEEEeCCcchHHHHHh---hcCCCcEEEeChHHHHHHHHh-ccccCCCccEEEEeCCcccCCCCC-H---
Q 009212 367 SLSKCGVPFRSMVVTGGFRQKTQLEN---LQEGVDVLIATPGRFMFLIKE-GILQLINLRCAILDEVDILFNDED-F--- 438 (540)
Q Consensus 367 ~l~~~~~~l~v~~l~Gg~~~~~q~~~---l~~~~dIlVaTP~rL~~ll~~-~~~~l~~i~~LVlDEad~ll~d~~-f--- 438 (540)
+.+ ++.+.++.|+.. ...... .....+|+|+|++.+...... ..+....+++|||||||++..... .
T Consensus 221 ~~f----~l~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 221 RRF----NLRFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HHS----CCCCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred HHh----CCCEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 654 234444443322 221111 123479999999987532111 123345789999999999973221 1
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccC
Q 009212 439 EVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 439 ~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
...+..+. ....+++++|||.
T Consensus 296 ~~~l~~L~---~~~~~~L~LTATP 316 (968)
T 3dmq_A 296 YQAIEQLA---EHVPGVLLLTATP 316 (968)
T ss_dssp HHHHHHHH---TTCSSEEESCSSC
T ss_pred HHHHHHHh---hcCCcEEEEEcCC
Confidence 22333332 2456799999997
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.7e-12 Score=147.12 Aligned_cols=163 Identities=19% Similarity=0.189 Sum_probs=113.9
Q ss_pred CCCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 289 LRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 289 ~~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
..++|+|.+++..++ .+++.|++.++|.|||+..+..+...+... .....+||||| ..|+.|..+.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~---------~~~~~~LIV~P-~sll~qW~~E 304 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR---------RQNGPHIIVVP-LSTMPAWLDT 304 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH---------SCCSCEEEECC-TTTHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc---------CCCCCEEEEEC-chHHHHHHHH
Confidence 379999999997655 789999999999999998766665544332 12345899999 7788999999
Q ss_pred HHhhhcCCCCceEEEEeCCcchHHHHHhh------------cCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc
Q 009212 365 CRSLSKCGVPFRSMVVTGGFRQKTQLENL------------QEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 365 l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l------------~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l 432 (540)
+.+++ ..+++.+++|+.......... ...++|+|+|++.+...... +.....++|||||||++
T Consensus 305 ~~~~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 305 FEKWA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHHS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGG
T ss_pred HHHHC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhh
Confidence 98885 457888888877655444332 23478999999998754322 22235789999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeccC----CHHHHHHH
Q 009212 433 FNDEDFEVALQSLISSSPVTAQYLFVTATL----PVEIYNKL 470 (540)
Q Consensus 433 l~d~~f~~~i~~Il~~l~~~~Q~ll~SATl----p~~i~~~l 470 (540)
-+ . .......+..++ ....+++|||. ..++..++
T Consensus 380 kn-~--~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll 417 (800)
T 3mwy_W 380 KN-A--ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALV 417 (800)
T ss_dssp CC-S--SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHH
T ss_pred cC-c--hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHH
Confidence 62 1 123333444443 45668899997 34544443
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.27 E-value=8.3e-11 Score=130.95 Aligned_cols=130 Identities=23% Similarity=0.231 Sum_probs=100.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 286 QNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 286 ~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
+|. .|+++|....-.+..|+ |+...||+|||+++.+|++-..+ .+..+.|++|+++||.|-++.+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL------------~G~~vhVvT~ndyLA~rdae~m 136 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL------------IGKGVHLVTVNDYLARRDALWM 136 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT------------TSSCEEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh------------cCCceEEEeccHHHHHhHHHHH
Confidence 465 79999999998888887 88999999999999999975543 2456999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCC--------------------------------------------------cchHHHHHhhcC
Q 009212 366 RSLSKCGVPFRSMVVTGG--------------------------------------------------FRQKTQLENLQE 395 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg--------------------------------------------------~~~~~q~~~l~~ 395 (540)
..+..+ .++++++++.. ....+....+
T Consensus 137 ~~l~~~-Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY-- 213 (822)
T 3jux_A 137 GPVYLF-LGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY-- 213 (822)
T ss_dssp HHHHHH-TTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--
T ss_pred HHHHHH-hCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--
Confidence 999886 78999998872 1112222222
Q ss_pred CCcEEEeChHHHH-HHHHhcc------ccCCCccEEEEeCCcccC
Q 009212 396 GVDVLIATPGRFM-FLIKEGI------LQLINLRCAILDEVDILF 433 (540)
Q Consensus 396 ~~dIlVaTP~rL~-~ll~~~~------~~l~~i~~LVlDEad~ll 433 (540)
.|||+.+|..-|- ++|+.+. .....+.|.||||+|.++
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 2899999998875 5665432 123558899999999764
No 80
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.24 E-value=2.1e-11 Score=136.04 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=68.4
Q ss_pred CCcHHHHHHHH----HHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 290 RPSQIQAMAFP----PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 290 ~ptpiQ~~aip----~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
+|+|.|.+.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----------~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----------KLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----------TCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----------CCeEEEECCCHHHHHHHHHHH
Confidence 58999988875 456899999999999999999999999988653 468999999999999999999
Q ss_pred HhhhcCCCCceEEEEeCCc
Q 009212 366 RSLSKCGVPFRSMVVTGGF 384 (540)
Q Consensus 366 ~~l~~~~~~l~v~~l~Gg~ 384 (540)
+.+... .++++..+.|+.
T Consensus 72 ~~l~~~-~~~~~~~l~gr~ 89 (620)
T 4a15_A 72 RSLSST-MKIRAIPMQGRV 89 (620)
T ss_dssp HHHHHH-SCCCEEECCCHH
T ss_pred HHHhhc-cCeEEEEEECCC
Confidence 988753 367777666643
No 81
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.19 E-value=1.2e-10 Score=130.42 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHH---------cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHH
Q 009212 290 RPSQIQAMAFPPVV---------EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQ 360 (540)
Q Consensus 290 ~ptpiQ~~aip~il---------~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Q 360 (540)
.++|+|.+++..+. .++..|+..+||.|||+..+..+...+.... .......++|||||+ .|+.|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~-----~~~p~~~~~LiV~P~-sll~q 128 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP-----DCKPEIDKVIVVSPS-SLVRN 128 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCT-----TSSCSCSCEEEEECH-HHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCc-----cccCCCCcEEEEecH-HHHHH
Confidence 68999999998763 4567999999999999997766655443221 011123469999996 89999
Q ss_pred HHHHHHhhhcCCCCceEEEEeCCcchHH--HHHhh-c-----CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCccc
Q 009212 361 VLSNCRSLSKCGVPFRSMVVTGGFRQKT--QLENL-Q-----EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDIL 432 (540)
Q Consensus 361 i~~~l~~l~~~~~~l~v~~l~Gg~~~~~--q~~~l-~-----~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~l 432 (540)
..+++.++... .+.+..++++..... ....+ . ...+|+|+|++.+.... ..+....+++||+||||++
T Consensus 129 W~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 129 WYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceec
Confidence 99999998752 456677777654321 12221 1 13789999999886543 2333456789999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 433 FNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 433 l~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
- ... ... ...+..+. ....+++|||.
T Consensus 205 k-n~~-~~~-~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 205 K-NSD-NQT-YLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp C-TTC-HHH-HHHHHHHC-CSEEEEECSSC
T ss_pred C-Chh-hHH-HHHHHhcc-cCcEEEEecCc
Confidence 7 222 122 22223333 45789999997
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.80 E-value=9.2e-09 Score=114.41 Aligned_cols=145 Identities=19% Similarity=0.294 Sum_probs=91.5
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCCch--hhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 292 SQIQAMAFPPVVEGKSCILADQSGSGKT--LAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 292 tpiQ~~aip~il~G~dvlv~ApTGSGKT--layllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
++.|+++++.++.++++++.+++|+||| ++++++++..+. ...+.++++++||.++|.++.+.+..+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~----------~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA----------DGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC----------SSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh----------hcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 667777765431 1235689999999999999988877654
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCc-EEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVD-VLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~d-IlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
.. .++..... .+.. ... ...+ ++-.+|+.. . +.........+++||||||+ |+ + ...+..|+..
T Consensus 221 ~~-l~l~~~~~-~~~~--~~~----~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml-~---~~~~~~Ll~~ 285 (608)
T 1w36_D 221 RQ-LPLTDEQK-KRIP--EDA----STLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MI-D---LPMMSRLIDA 285 (608)
T ss_dssp HH-SSCCSCCC-CSCS--CCC----BTTTSCC-------------CTTSCCSCSEEEECSGG-GC-B---HHHHHHHHHT
T ss_pred hc-CCCCHHHH-hccc--hhh----hhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hC-C---HHHHHHHHHh
Confidence 31 11110000 0000 000 0011 222233321 1 11112222378999999999 66 3 4677888999
Q ss_pred CCCCCcEEEEecc
Q 009212 449 SPVTAQYLFVTAT 461 (540)
Q Consensus 449 l~~~~Q~ll~SAT 461 (540)
++..+|++++.-.
T Consensus 286 l~~~~~liLvGD~ 298 (608)
T 1w36_D 286 LPDHARVIFLGDR 298 (608)
T ss_dssp CCTTCEEEEEECT
T ss_pred CCCCCEEEEEcch
Confidence 9989999998654
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.52 E-value=6e-07 Score=100.76 Aligned_cols=68 Identities=31% Similarity=0.412 Sum_probs=51.8
Q ss_pred CCCCCcHHHHHHHHHHH----cCC-cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHH
Q 009212 287 NFLRPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQV 361 (540)
Q Consensus 287 gf~~ptpiQ~~aip~il----~G~-dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi 361 (540)
+| .|++.|.++|..+. .|. ..++.+.||||||+++.- ++..+ +..+|||+|+..+|.|+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~--------------~~~~lvv~~~~~~A~ql 69 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL--------------GRPALVLAPNKILAAQL 69 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------------TCCEEEEESSHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--------------CCCEEEEecCHHHHHHH
Confidence 56 89999999988654 343 567889999999987542 22222 11399999999999999
Q ss_pred HHHHHhhhc
Q 009212 362 LSNCRSLSK 370 (540)
Q Consensus 362 ~~~l~~l~~ 370 (540)
+..++.+..
T Consensus 70 ~~el~~~~~ 78 (664)
T 1c4o_A 70 AAEFRELFP 78 (664)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHHCC
Confidence 999999853
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.12 E-value=1.4e-05 Score=89.70 Aligned_cols=66 Identities=27% Similarity=0.394 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHH----cCC-cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHH
Q 009212 290 RPSQIQAMAFPPVV----EGK-SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSN 364 (540)
Q Consensus 290 ~ptpiQ~~aip~il----~G~-dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~ 364 (540)
.|+..|..+|..+. .|. ..++.+-||||||++..- ++..+ ...+|||+|+..+|.|++..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~--------------~~~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV--------------NKPTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--------------CCCEEEECSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh--------------CCCEEEEECCHHHHHHHHHH
Confidence 68888988887654 343 567889999999976432 22222 11389999999999999999
Q ss_pred HHhhhc
Q 009212 365 CRSLSK 370 (540)
Q Consensus 365 l~~l~~ 370 (540)
++.+..
T Consensus 77 l~~~~~ 82 (661)
T 2d7d_A 77 FKEFFP 82 (661)
T ss_dssp HHHHCT
T ss_pred HHHHcC
Confidence 999853
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.77 E-value=0.00013 Score=80.47 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.+++.|++++..++.++.+++.++.|+|||.. +..++..+.. .+.++++++||...+..+.+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-----------~g~~Vl~~ApT~~Aa~~L~e~~~~-- 254 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-----------LGLEVGLCAPTGKAARRLGEVTGR-- 254 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHHTS--
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-----------cCCeEEEecCcHHHHHHhHhhhcc--
Confidence 58999999999999999999999999999965 2334433332 245799999999988877654321
Q ss_pred cCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhC
Q 009212 370 KCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSS 449 (540)
Q Consensus 370 ~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l 449 (540)
.... .. +.+. .. |. .+..........++|||||++.+- ...+..+++.+
T Consensus 255 ------~a~T------ih---~ll~----~~---~~----~~~~~~~~~~~~dvlIIDEasml~-----~~~~~~Ll~~~ 303 (574)
T 3e1s_A 255 ------TAST------VH---RLLG----YG---PQ----GFRHNHLEPAPYDLLIVDEVSMMG-----DALMLSLLAAV 303 (574)
T ss_dssp ------CEEE------HH---HHTT----EE---TT----EESCSSSSCCSCSEEEECCGGGCC-----HHHHHHHHTTS
T ss_pred ------cHHH------HH---HHHc----CC---cc----hhhhhhcccccCCEEEEcCccCCC-----HHHHHHHHHhC
Confidence 1000 00 0000 00 00 001112233467899999998663 34667778888
Q ss_pred CCCCcEEEEec
Q 009212 450 PVTAQYLFVTA 460 (540)
Q Consensus 450 ~~~~Q~ll~SA 460 (540)
+...+++++.-
T Consensus 304 ~~~~~lilvGD 314 (574)
T 3e1s_A 304 PPGARVLLVGD 314 (574)
T ss_dssp CTTCEEEEEEC
T ss_pred cCCCEEEEEec
Confidence 77778777644
No 86
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.74 E-value=0.00011 Score=78.48 Aligned_cols=135 Identities=17% Similarity=0.201 Sum_probs=79.7
Q ss_pred HHCCCCCCcHHHHHHHHHHHcC-----CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHH
Q 009212 284 KRQNFLRPSQIQAMAFPPVVEG-----KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELA 358 (540)
Q Consensus 284 ~~~gf~~ptpiQ~~aip~il~G-----~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa 358 (540)
.-+.|..+++-|++++..++.. ..+++.|+.|||||.+ +..++..+.... ...+++++||...|
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~----------~~~il~~a~T~~Aa 87 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG----------ETGIILAAPTHAAK 87 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT----------CCCEEEEESSHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC----------CceEEEecCcHHHH
Confidence 4457889999999999876532 3899999999999964 345555554321 13689999999988
Q ss_pred HHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCC
Q 009212 359 SQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN 434 (540)
Q Consensus 359 ~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~ 434 (540)
..+...+.. .+..++ . .-.+. .....+.. .....+...++|||||++.+-
T Consensus 88 ~~l~~~~~~--------~~~T~h------~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~- 141 (459)
T 3upu_A 88 KILSKLSGK--------EASTIH------S-ILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD- 141 (459)
T ss_dssp HHHHHHHSS--------CEEEHH------H-HHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC-
T ss_pred HHHHhhhcc--------chhhHH------H-HhccCcccccccchhcc----------cccccccCCCEEEEECchhCC-
Confidence 776655411 111100 0 00000 00011111 112345678999999998653
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 435 DEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 435 d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
...+..++..++...+++++.
T Consensus 142 ----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 142 ----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp ----HHHHHHHHHHSCTTCEEEEEE
T ss_pred ----HHHHHHHHHhccCCCEEEEEC
Confidence 234555666666566666654
No 87
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.73 E-value=0.00027 Score=78.66 Aligned_cols=70 Identities=19% Similarity=0.303 Sum_probs=54.9
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 288 f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
+..+++-|.+|+..++.+.-++|.||+|+|||.+. ..++..+.. ..+.++++++||...|.++...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~----------~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLAR----------QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHT----------SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHH----------cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 34688999999999888788899999999999864 334444432 1355799999999999999888765
Q ss_pred h
Q 009212 368 L 368 (540)
Q Consensus 368 l 368 (540)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 4
No 88
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00033 Score=80.13 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=55.2
Q ss_pred CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 288 FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 288 f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
+..+++-|.+|+..++.+.-++|.||.|+|||.+. ..++..+... .+.++|+++||...|.++.+.+..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~----------~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI----------HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH----------HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC----------CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 34678999999999988777899999999999764 3344444332 145799999999999999988876
Q ss_pred h
Q 009212 368 L 368 (540)
Q Consensus 368 l 368 (540)
+
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 5
No 89
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.53 E-value=0.00014 Score=81.09 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHHcCCc-EEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 290 RPSQIQAMAFPPVVEGKS-CILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~d-vlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
.+++-|.+|+..++..++ .||.||.|+|||.+.. .++..+... +.++|+++||..-|.++...+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~-----------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQ-----------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhC-----------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 578899999999887775 6788999999998743 344444332 457999999999999988877654
No 90
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.52 E-value=0.00058 Score=78.11 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++.|.+|+..++.+.-++|.||.|+|||.+. ..++..+... .+.++++++||...|.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~----------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ----------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT----------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc----------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4579999999999988888899999999999863 3444444321 3457999999999999998887654
No 91
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.85 E-value=0.004 Score=65.18 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=77.1
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++.|..+++.++.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----------~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----------CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 6899999999877555678999999999999876666554432 235679999999999999998888765
Q ss_pred cCCCC-ce--EEEEeCCcchHHHHHhhcCCCcEEEeC--hHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 370 KCGVP-FR--SMVVTGGFRQKTQLENLQEGVDVLIAT--PGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 370 ~~~~~-l~--v~~l~Gg~~~~~q~~~l~~~~dIlVaT--P~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
..... ++ +... .... ..+.+|..|.+.+ |+.+ + + .++.++|+||+|.+-
T Consensus 233 ~~~P~ll~~~~~~~-~~~~-----I~f~nGs~i~~lsa~~~sl----r-G----~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 233 ELLPDFLQPGIVEW-NKGS-----IELDNGSSIGAYASSPDAV----R-G----NSFAMIYIEDCAFIP 286 (385)
T ss_dssp HHSCTTTSCCEEEE-CSSE-----EEETTSCEEEEEECSHHHH----H-T----SCCSEEEEESGGGST
T ss_pred HhChHhhhhhhccC-CccE-----EEeCCCCEEEEEECCCCCc----c-C----CCCCEEEechhhhcC
Confidence 42111 11 1111 1110 1123455554443 3322 2 1 246789999999886
No 92
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.56 E-value=0.031 Score=61.51 Aligned_cols=143 Identities=11% Similarity=0.097 Sum_probs=87.0
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.++|+|...+..+-..+-+++..+-|+|||.+....++..+.. ..+..++++.|+++.|..++..++.+.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----------~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----------NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----------SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----------CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 5899999998877556789999999999999876555544432 125689999999999999999888876
Q ss_pred cCCCC-ceEEEE-eCCcchHHHHHhhcCCCcEEEeC--hHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 370 KCGVP-FRSMVV-TGGFRQKTQLENLQEGVDVLIAT--PGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 370 ~~~~~-l~v~~l-~Gg~~~~~q~~~l~~~~dIlVaT--P~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
..... ++.... ..... ..+.+|..|.+.+ |+.+ +. . +.+++|+||+|.+- + ....+..+
T Consensus 233 ~~~p~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----rG-~----~~~~~iiDE~~~~~-~--~~~l~~~~ 295 (592)
T 3cpe_A 233 ELLPDFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAV----RG-N----SFAMIYIEDCAFIP-N--FHDSWLAI 295 (592)
T ss_dssp TTSCTTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHH----HH-S----CCSEEEEETGGGCT-T--HHHHHHHH
T ss_pred HhChHhhccccccCCccE-----EEecCCCEEEEEeCCCCCc----cC-C----CcceEEEehhccCC-c--hhHHHHHH
Confidence 53221 111000 01111 1123455554432 4333 21 1 36789999999875 2 23334444
Q ss_pred HHhCC--CCCcEEEEe
Q 009212 446 ISSSP--VTAQYLFVT 459 (540)
Q Consensus 446 l~~l~--~~~Q~ll~S 459 (540)
...+. ...+++++|
T Consensus 296 ~~~l~~~~~~~ii~is 311 (592)
T 3cpe_A 296 QPVISSGRRSKIIITT 311 (592)
T ss_dssp HHHHSSSSCCEEEEEE
T ss_pred HHHhccCCCceEEEEe
Confidence 33332 234555544
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.42 E-value=0.018 Score=52.62 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|+.+++.+|+|+|||..
T Consensus 37 ~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GCCEEEECCSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478999999999999965
No 94
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.61 E-value=0.021 Score=60.69 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=32.0
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
=.++.|+.|+|||.... +.+ . ....+|++||++++..+.+.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~-~------------~~~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRV-N------------FEEDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHC-C------------TTTCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHH----HHh-c------------cCCeEEEeCCHHHHHHHHHHhhhc
Confidence 46788999999997532 111 1 023699999999998888777543
No 95
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.13 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.+.++++.+|+|+|||.+. -.++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 3468999999999999763 3334444
No 96
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.23 E-value=0.013 Score=55.31 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.++.+++.+|+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467999999999999964
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.99 E-value=0.036 Score=61.10 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++-|.+++. ..+..++|.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+..+
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~--------~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN--------CSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC--------CChhhEEEEeccHHHHHHHHHHHHHH
Confidence 468999999986 33578999999999999875444443332211 12236999999999999999999887
Q ss_pred hc
Q 009212 369 SK 370 (540)
Q Consensus 369 ~~ 370 (540)
..
T Consensus 78 ~~ 79 (647)
T 3lfu_A 78 MG 79 (647)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 98
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.94 E-value=0.17 Score=46.33 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
..-.+|||||+|.+. ......+..++...+....+++.+.
T Consensus 101 ~~~~vliiDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALT--ADAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSC--HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcC--HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 455689999999986 3455566667776655555555443
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.90 E-value=0.056 Score=54.25 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+..+++.+|+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 46899999999999965
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.84 E-value=0.033 Score=51.78 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=23.3
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEE
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFV 458 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~ 458 (540)
..++|+|||+|.+- ..+...+..+... ...+++.
T Consensus 76 ~~dvviIDE~Q~~~--~~~~~~l~~l~~~---~~~Vi~~ 109 (184)
T 2orw_A 76 DTRGVFIDEVQFFN--PSLFEVVKDLLDR---GIDVFCA 109 (184)
T ss_dssp TEEEEEECCGGGSC--TTHHHHHHHHHHT---TCEEEEE
T ss_pred CCCEEEEECcccCC--HHHHHHHHHHHHC---CCCEEEE
Confidence 57899999999874 4567777666654 4444443
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.77 E-value=0.035 Score=49.77 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|+.+++.+|+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999964
No 102
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.37 E-value=0.14 Score=54.25 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=24.4
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEecc
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTAT 461 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SAT 461 (540)
..++|+|||+|.+.........+..++..+ ....++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 466899999999983113344444444432 334566665443
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.09 E-value=0.055 Score=60.31 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 290 RPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 290 ~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.+++-|++++.. .+..++|.|+.|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~--------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG--------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC--------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999864 3678999999999999875544444443321 123469999999999999999988764
No 104
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.87 E-value=0.1 Score=50.30 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=60.3
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|.=+++.+++|+|||.+. +-++.++.. .+.+++|+.|...- . -...+... .++.
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~-----------~g~kVli~~~~~d~--r---~~~~i~sr-lG~~------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEY-----------ADVKYLVFKPKIDT--R---SIRNIQSR-TGTS------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEEECCCG--G---GCSSCCCC-CCCS-------
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHh-----------cCCEEEEEEeccCc--h---HHHHHHHh-cCCC-------
Confidence 4556778899999999764 333434332 24568888776531 0 00011110 0100
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
. ..+-+.+...++..+... ..-...++|||||++.+. ......+..+... ..+++++.-
T Consensus 66 --~----------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~--~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 66 --L----------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD--DRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp --S----------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC--THHHHHHHHHHHT---TCEEEEECC
T ss_pred --c----------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc--HHHHHHHHHHHhC---CCeEEEEec
Confidence 0 123355666676666542 222457899999998764 3344445444432 455555443
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.68 E-value=0.24 Score=50.04 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCchhhc
Q 009212 304 EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlay 322 (540)
.+..+++.+|+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999753
No 106
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.67 E-value=0.13 Score=45.39 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=17.4
Q ss_pred HHcCCcEEEEcCCCCCchhhc
Q 009212 302 VVEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlay 322 (540)
...+.++++.+++|+|||...
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346689999999999999753
No 107
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.64 E-value=0.089 Score=59.30 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+++-|.+++.. .+..++|.|..|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~--------~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH--------VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC--------CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999864 3578999999999999875444444443211 12246999999999999998888776
Q ss_pred h
Q 009212 369 S 369 (540)
Q Consensus 369 ~ 369 (540)
.
T Consensus 80 l 80 (724)
T 1pjr_A 80 L 80 (724)
T ss_dssp H
T ss_pred h
Confidence 3
No 108
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.46 E-value=0.12 Score=57.54 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCcHHHHHHHHHHHc--CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 290 RPSQIQAMAFPPVVE--GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 290 ~ptpiQ~~aip~il~--G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
.+|.-|.+++..++. ..-.++.|.-|.|||.+.-+.+-. +. ..++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~--------------~~~~vtAP~~~a~~~l~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA--------------GRAIVTAPAKASTDVLAQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS--------------SCEEEECSSCCSCHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH--------------hCcEEECCCHHHHHHHHHHhhC
Confidence 578899999988775 234788999999999654444332 21 1369999999876654443221
Q ss_pred hhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 368 LSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 368 l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
- |-+..|+.+. . .+...++||||||=.+- .+.+..++.
T Consensus 240 ~------------------------------i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp-----~pll~~ll~ 277 (671)
T 2zpa_A 240 K------------------------------FRFIAPDALL---A----SDEQADWLVVDEAAAIP-----APLLHQLVS 277 (671)
T ss_dssp G------------------------------CCBCCHHHHH---H----SCCCCSEEEEETGGGSC-----HHHHHHHHT
T ss_pred C------------------------------eEEeCchhhh---h----CcccCCEEEEEchhcCC-----HHHHHHHHh
Confidence 0 2223565532 1 23458899999995442 466677766
Q ss_pred hCCCCCcEEEEeccC
Q 009212 448 SSPVTAQYLFVTATL 462 (540)
Q Consensus 448 ~l~~~~Q~ll~SATl 462 (540)
..+ .++||.|+
T Consensus 278 ~~~----~v~~~tTv 288 (671)
T 2zpa_A 278 RFP----RTLLTTTV 288 (671)
T ss_dssp TSS----EEEEEEEB
T ss_pred hCC----eEEEEecC
Confidence 433 47777777
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.29 E-value=0.15 Score=50.28 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
+.++++.+|+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 347999999999999753
No 110
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.26 E-value=0.071 Score=49.75 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=31.3
Q ss_pred HhCCCceEEeCCCccccCCCceeEEEEcCCCCCCCCchhhHhhhHHHHHHHHHHhCCCCcEEEEeccc
Q 009212 472 EVFPDCKVVMGPGMHRISPGLEEFLVDCSGDQESDKTPETAFLNKKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 472 ~~l~~~~~i~~~~~~~~~~~I~q~~v~~~~~~~~~~~~~~~~~~K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
.++.++..+..........+|.|+++.+.. ..|+..|.+++.... .++||||+++
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~------------~~K~~~L~~~l~~~~-~~~lVF~~~~ 64 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKE------------EAKMVYLLECLQKTP-PPVLIFAEKK 64 (191)
T ss_dssp ------------------CCSEEEEEECCG------------GGHHHHHHHHHTTSC-SCEEEECSCH
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcCh------------HHHHHHHHHHHHhCC-CCEEEEECCH
Confidence 456666666555555677889999998875 469999999998764 5899999986
No 111
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.13 E-value=0.61 Score=45.94 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=26.3
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
..-.+|||||+|.+. ......+..+++..+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~--~~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALT--QDAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCC--HHHHHHHHHHHHhcCCCCeEEEEe
Confidence 456789999999986 344556666677655555555544
No 112
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.11 E-value=0.41 Score=51.55 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=27.0
Q ss_pred CccEEEEeCCcccCC-CCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 420 NLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 420 ~i~~LVlDEad~ll~-d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
.-.+|||||+|.|.. +.++...+..+++.. ...+++++++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 446899999999974 233445666666553 45577777764
No 113
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.08 E-value=0.57 Score=43.24 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=23.2
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
.-.+|||||+|.+. ......+..++...+....+|+.|
T Consensus 126 ~~~vlviDe~~~l~--~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSC--HHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECccccc--HHHHHHHHHHHhcCCCceEEEEEe
Confidence 34689999999975 344455555565544444444444
No 114
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.94 E-value=0.28 Score=45.25 Aligned_cols=16 Identities=38% Similarity=0.393 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
+.+++.+|+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999975
No 115
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.82 E-value=0.085 Score=63.10 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 289 LRPSQIQAMAFPPVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 289 ~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+|+-|.++|.. .+++++|.|..|||||.+.+--++..+.... .....-++|+|++|+..|.++.+.+...
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~------~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEE------NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSS------SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3689999999854 4789999999999999885544554443210 0112346999999999999999888773
No 116
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.76 E-value=0.4 Score=48.49 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHH----cCC---cEEEEcCCCCCchhhcH
Q 009212 291 PSQIQAMAFPPVV----EGK---SCILADQSGSGKTLAYL 323 (540)
Q Consensus 291 ptpiQ~~aip~il----~G~---dvlv~ApTGSGKTlayl 323 (540)
.+|+|.+++..+. .|+ -+++.+|.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577777765543 444 38999999999997643
No 117
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.44 E-value=0.62 Score=46.80 Aligned_cols=42 Identities=19% Similarity=0.425 Sum_probs=29.1
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
..-+++||||+|.| +......+..+++..+....+|+.|...
T Consensus 133 ~~~~vlilDE~~~L--~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANSL--TKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTSS--CHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCcccc--CHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 35679999999994 4556667777777766666666665543
No 118
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.30 E-value=0.1 Score=51.10 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=32.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHH--HHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPP--VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ-~~aip~--il~G~dvlv~ApTGSGKTla 321 (540)
.+|+++.-.+..++.|.+.- . .+.+ .+.+.. +..++.+++.+|+|+|||..
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVV-E--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHT-H--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHH-H--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 46889888888877776531 0 0011 111111 13457899999999999964
No 119
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.16 E-value=0.68 Score=44.90 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
+.+++.+|+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999753
No 120
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.05 E-value=1 Score=44.74 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
...++|||||+|.+. .......+..+++..+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~-~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG-LAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGG-GHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccC-cHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 367789999999985 12345556666665555566666443
No 121
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.01 E-value=1.8 Score=43.08 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=28.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTla 321 (540)
.+|.++--...+++.|.. ++.... ...++++.+|+|+|||..
T Consensus 26 ~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHH
T ss_pred CCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHH
Confidence 368887777777766643 111111 235899999999999975
No 122
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.68 E-value=1.3 Score=44.50 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=30.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il-----~G~dvlv~ApTGSGKTla 321 (540)
.+|++++-.+.+.+.|.+.=. .|+ -.|.+. ..+.+++.+|+|+|||..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 579999888888777754200 000 001121 236899999999999965
No 123
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.45 E-value=0.71 Score=43.13 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
|+=.++.++.|+|||.+.+ -++.++.. .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~-----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI-----------AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH-----------TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH-----------CCCEEEEEEecc
Confidence 4556778999999997643 44444432 255799998874
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.39 E-value=0.36 Score=48.97 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
.+.+++.+|+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999753
No 125
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.21 E-value=0.6 Score=49.36 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=36.5
Q ss_pred CCccEEEEeCCcccC--CCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHH
Q 009212 419 INLRCAILDEVDILF--NDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYN 468 (540)
Q Consensus 419 ~~i~~LVlDEad~ll--~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~ 468 (540)
...+++|||++-++. .+..+...+..+.....+..-+++++|+...+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 467899999998764 45667778888877776666778888887544433
No 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.21 E-value=0.44 Score=47.98 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
++.+++.+|+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999753
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.82 E-value=0.27 Score=49.90 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=14.2
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
.+++.+|+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999753
No 128
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.81 E-value=1.6 Score=44.83 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=29.8
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH---------HcCCcEEEEcCCCCCchhhc
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---------VEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~i---------l~G~dvlv~ApTGSGKTlay 322 (540)
.+|.++.-...+++.|...- .++.. ...+++++.+|+|+|||...
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIV----------ILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHH----------HHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 46888877777777665421 11111 13479999999999999753
No 129
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.69 E-value=2.3 Score=41.91 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=26.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP-VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~-il~G~dvlv~ApTGSGKTla 321 (540)
.+|.++--....+..|... ...+.. -.....+++.+|+|+|||..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~---------l~~~~~~~~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVY---------LEAAKARKEPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHH---------HHHHHHHCSCCCCCEEECCTTCCCHHH
T ss_pred ccHHHhhCHHHHHHHHHHH---------HHHHHccCCCCCcEEEECCCCCCHHHH
Confidence 3577765566666655331 010100 01347899999999999964
No 130
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.68 E-value=0.39 Score=42.83 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
.+++++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999653
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.41 E-value=0.49 Score=44.57 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=26.2
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPT 354 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Pt 354 (540)
.|+=.++.++.|+|||.- |+-.+.+.... +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~-----------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQIA-----------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHHT-----------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHHc-----------CCeEEEEccc
Confidence 356678899999999944 34444433322 3568898887
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.31 E-value=0.61 Score=46.75 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
++++++.+|+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 589999999999999753
No 133
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.21 E-value=1.7 Score=38.74 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=53.8
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.++++..+..++..+... ++.+..++|+....+....+ . ...+|||+|.- + ...+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----A-ARGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----G-TTTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----h-hcCCchhc
Confidence 347999999999999999988875 35788899988765543333 2 35789999942 2 34667888
Q ss_pred ccEEEEeC
Q 009212 421 LRCAILDE 428 (540)
Q Consensus 421 i~~LVlDE 428 (540)
++++|.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 98887633
No 134
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.90 E-value=0.9 Score=45.35 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=25.9
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
...+|+|||+|.+. ......+..+++..+....+++.+
T Consensus 133 ~~~vliiDE~~~l~--~~~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMT--ADAQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccC--HHHHHHHHHHHHhcCCCceEEEEe
Confidence 45789999999986 344556666777666555555544
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.86 E-value=2.4 Score=42.30 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=31.7
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCcEEEEcCCCCCchhhc
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il-----~G~dvlv~ApTGSGKTlay 322 (540)
..+|.++.-...+++.|...=. .| ...|.+. ..+.+++.+|+|+|||...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3579999888888887765310 00 0011111 1357999999999999753
No 136
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.62 E-value=2.6 Score=42.28 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=27.7
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
...+++|+||+|.|. ......+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMT--NAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSC--HHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCC--HHHHHHHHHHHhcCCCCeEEEEEe
Confidence 457889999999986 345566777777766666666554
No 137
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.20 E-value=0.94 Score=43.27 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre 356 (540)
|+=.++.++.|+|||.+.+ -.+.+... .+.+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL-~~a~r~~~-----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELI-RRVRRTQF-----------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHH-HHHHHHHH-----------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH-----------CCCEEEEEEeccC
Confidence 3445578888999997643 33333332 2557999998764
No 138
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.06 E-value=0.97 Score=41.94 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCchhhc
Q 009212 304 EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlay 322 (540)
.|.-+++.+++|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4677889999999999643
No 139
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.95 E-value=2 Score=45.23 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=30.6
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHH-HHHH-HHHcCCcEEEEcCCCCCchhh
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQA-MAFP-PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~-~aip-~il~G~dvlv~ApTGSGKTla 321 (540)
..+|.+++-.+.+.+.|...-. .|++. ..+. .....+.+++.+|+|+|||..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 3578998877777777754200 00000 0000 011236899999999999975
No 140
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.69 E-value=2.9 Score=37.20 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.+++++-+..++..+... ++.+..++|+....+....+ . ...+|||+|.- + ...+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----L-ARGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----G-TTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----h-hcCCCccc
Confidence 457999999999999999888764 35788899988765554333 2 35789999942 2 34667888
Q ss_pred ccEEEEeC
Q 009212 421 LRCAILDE 428 (540)
Q Consensus 421 i~~LVlDE 428 (540)
++++|.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887743
No 141
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.65 E-value=1.1 Score=42.98 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=51.3
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|.=.++.++.|+|||... +-.+.++.. .+.+++|+.|...--.-.......+ +.....
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~~-----------~g~kvli~kp~~D~R~~~~~I~Sr~---G~~~~a------ 85 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGIY-----------AKQKVVVFKPAIDDRYHKEKVVSHN---GNAIEA------ 85 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHH-----------TTCCEEEEEEC-----------CBT---TBCCEE------
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHHH-----------cCCceEEEEeccCCcchhhhHHHhc---CCceee------
Confidence 3555678899999999653 333444432 2456899988654100000011111 111221
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCCCCCHHHHHHHHH
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFNDEDFEVALQSLI 446 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il 446 (540)
+.|..+..+...+ ...+++|+||||+.+- ......+..+.
T Consensus 86 ---------------~~v~~~~di~~~i------~~~~dvV~IDEaQFf~--~~~v~~l~~la 125 (219)
T 3e2i_A 86 ---------------INISKASEIMTHD------LTNVDVIGIDEVQFFD--DEIVSIVEKLS 125 (219)
T ss_dssp ---------------EEESSGGGGGGSC------CTTCSEEEECCGGGSC--THHHHHHHHHH
T ss_pred ---------------EEeCCHHHHHHHH------hcCCCEEEEechhcCC--HHHHHHHHHHH
Confidence 2333333332211 2467899999998774 45667777776
No 142
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.52 E-value=2.4 Score=39.17 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=53.3
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|++++-+..+...++.. ++.+..++|+....+....+ . ..++|||+|. .+. ..+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCccc
Confidence 347999999999999999988775 35788899988765554333 2 3589999993 333 3667888
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 123 v~~VI~ 128 (191)
T 2p6n_A 123 IQHVIN 128 (191)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 988876
No 143
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=88.30 E-value=2.8 Score=37.78 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=59.1
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|+++..+..++..+... ++.+..++|+....+....+ . ...+|||+|.- + ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-STTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-hcCcchhh
Confidence 457999999999999999988775 35788899988766543333 2 35799999952 1 33567778
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
++++|.=+. .......++++
T Consensus 100 ~~~Vi~~d~-----p~~~~~~~qr~ 119 (172)
T 1t5i_A 100 VNIAFNYDM-----PEDSDTYLHRV 119 (172)
T ss_dssp CSEEEESSC-----CSSHHHHHHHH
T ss_pred CCEEEEECC-----CCCHHHHHHHh
Confidence 888886333 23445555555
No 144
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.00 E-value=2.3 Score=38.21 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=54.3
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|+++..+..++..+... ++.+..++|+....+....+ . ...+|||+|.- + ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C-ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C-CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h-hcCCCccc
Confidence 458999999999999999888764 45788899998766554333 2 35799999942 2 34667888
Q ss_pred ccEEEEeC
Q 009212 421 LRCAILDE 428 (540)
Q Consensus 421 i~~LVlDE 428 (540)
++++|.=+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888633
No 145
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.88 E-value=4.5 Score=40.43 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=24.7
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
..-.+|||||+|.|. ......+..+++..+....+|+.+
T Consensus 118 ~~~~vliiDe~~~l~--~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLS--RHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSC--HHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhc--HHHHHHHHHHHhcCCCceEEEEEe
Confidence 345789999999985 344455666666655444444444
No 146
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.56 E-value=1.3 Score=41.54 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=30.9
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
.|.-+++.+++|+|||...+ -++..+... +..++|+.- .+...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~-~~~~~~~~~-----------~~~v~~~~~-e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQ-QFLWNGLKM-----------GEPGIYVAL-EEHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHH-HHHHHHHHT-----------TCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHH-HHHHHHHhc-----------CCeEEEEEc-cCCHHHHHHHHHHc
Confidence 46788999999999997533 232222221 234666653 33455666666544
No 147
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.42 E-value=4.4 Score=42.82 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=27.0
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIY 467 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~ 467 (540)
..+++|||.+=++..+......+..+.....+..-++++.|+...+..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 356778887765542333444555555555445556666777654433
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.14 E-value=2.3 Score=41.60 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=25.4
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
.-.+|||||+|.|. ......+..+++..+....+++.|
T Consensus 107 ~~~viiiDe~~~l~--~~~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMT--AGAQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSC--HHHHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCC--HHHHHHHHHHHhccCCCceEEEEe
Confidence 36789999999986 234445666666655556666655
No 149
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.81 E-value=1 Score=44.02 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=28.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
.+|.++--.+.+++.|... ... -...++++.+|+|+|||..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHH
Confidence 4677776677777777653 110 1123699999999999965
No 150
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.44 E-value=0.83 Score=45.25 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5788999999999964
No 151
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.38 E-value=2.6 Score=40.79 Aligned_cols=41 Identities=12% Similarity=0.268 Sum_probs=26.7
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre 356 (540)
.|+=.++.++.|+|||.+.+ -.+.+.. ..+.+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL-~~~~r~~-----------~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELM-RRVRRFQ-----------IAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHH-HHHHHHH-----------TTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHH-HHHHHHH-----------HCCCeEEEEeecCC
Confidence 35656778888999997643 3333332 23567899888753
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.38 E-value=1.1 Score=45.65 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCcEEE--EcCCCCCchhhc
Q 009212 305 GKSCIL--ADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv--~ApTGSGKTlay 322 (540)
+..+++ .++.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 346888 899999999753
No 153
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=85.98 E-value=3.6 Score=38.45 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=53.5
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|+++.-+..++..+... ++.+..++|+....++...+ . ...+|+|+|. .+ ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCcc
Confidence 447999999999999999888775 35788899998776654443 2 3478999994 22 34677888
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 988874
No 154
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.70 E-value=2 Score=43.76 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=29.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCcEEEEcCCCCCchhhc
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV-----EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il-----~G~dvlv~ApTGSGKTlay 322 (540)
.+|.+++-.+.+++.|...=. .| ...|.+. ..+.+++.+|+|+|||...
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~---~~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTH---HH---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 468888766667666644200 00 0011111 2357999999999999753
No 155
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=85.02 E-value=6.2 Score=42.15 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=30.1
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH--HcCCcEEEEcCCCCCchhhc
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV--VEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~i--l~G~dvlv~ApTGSGKTlay 322 (540)
..|.+++-....++.|.+.= ..+. ...+.+..+ ...+.+++.+|+|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i-~~~l-~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMV-ELPL-RHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHT-HHHH-HCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHH-HHHh-hCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 35777766666666665521 0000 001112222 23468999999999999753
No 156
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.96 E-value=2.1 Score=44.92 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=53.6
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh-hhcCC-CCceEEEEe
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS-LSKCG-VPFRSMVVT 381 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~-l~~~~-~~l~v~~l~ 381 (540)
.|.=+++.|++|+|||.. ++-+...+... .+..++|+.-- .-..|+...+.. ..... ..++ .
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~a~~----------~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~l~----~ 262 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNAALK----------EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNRVR----L 262 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHHT----------TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTTCC----G
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHh----------CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHh----C
Confidence 345688899999999954 44444443321 13346776542 223344444322 11110 1121 1
Q ss_pred CCcchHHHHHh-------hcCCCcEEEe-----ChHHHHHHHHhccccCCCccEEEEeCCcccC
Q 009212 382 GGFRQKTQLEN-------LQEGVDVLIA-----TPGRFMFLIKEGILQLINLRCAILDEVDILF 433 (540)
Q Consensus 382 Gg~~~~~q~~~-------l~~~~dIlVa-----TP~rL~~ll~~~~~~l~~i~~LVlDEad~ll 433 (540)
|.... .++.. +.. ..|.|- |+..+...+++-. .-..+++||||..+.|.
T Consensus 263 g~l~~-~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 263 GQLTD-RDFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp GGCCH-HHHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCB
T ss_pred CCCCH-HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcC
Confidence 22221 22221 222 345553 3445544333211 11258899999999987
No 157
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.88 E-value=6.3 Score=42.14 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=59.2
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.|+++.-|..++..+..... .++.+..++|+....+....+. ...+|||||-- + ...+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-ARGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-TSSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----h-hcCCCcc
Confidence 456899999999999999999988754 3578888999987765543332 45899999962 2 3467888
Q ss_pred CccEEEEeCC
Q 009212 420 NLRCAILDEV 429 (540)
Q Consensus 420 ~i~~LVlDEa 429 (540)
.+++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8999886544
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.14 E-value=1.1 Score=42.25 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=27.9
Q ss_pred CCccEEEEeCCcccCCC-----CCHHHHHHHHHHhCCCCCcEEEEeccCCHH
Q 009212 419 INLRCAILDEVDILFND-----EDFEVALQSLISSSPVTAQYLFVTATLPVE 465 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d-----~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~ 465 (540)
...++||+||.-.++ + ......+..+++.+...-.+++++.-...+
T Consensus 134 ~~p~~lilDep~~~l-d~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIA-LRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHH-HHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHH-hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 467889999998877 3 345555666666554333455665555444
No 159
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=83.21 E-value=2.3 Score=46.49 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHH
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQ 328 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~ 328 (540)
..+++|.+.||||||.+...-++.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999764433433
No 160
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.20 E-value=2.9 Score=43.02 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=19.2
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
.|.-+++.+++|+|||.. ++.++..+.
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~~~~ 99 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVAQAQ 99 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHHHHH
Confidence 456788999999999954 445544443
No 161
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=82.66 E-value=5.7 Score=39.61 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHH
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVE 472 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~ 472 (540)
..-+++||||||.|- ..-...+.+.++.-+....+++++ +-+..+...+.+
T Consensus 81 ~~~kvviIdead~lt--~~a~naLLk~LEep~~~t~fIl~t-~~~~kl~~tI~S 131 (305)
T 2gno_A 81 YTRKYVIVHDCERMT--QQAANAFLKALEEPPEYAVIVLNT-RRWHYLLPTIKS 131 (305)
T ss_dssp SSSEEEEETTGGGBC--HHHHHHTHHHHHSCCTTEEEEEEE-SCGGGSCHHHHT
T ss_pred CCceEEEeccHHHhC--HHHHHHHHHHHhCCCCCeEEEEEE-CChHhChHHHHc
Confidence 457899999999996 334455667777655555555554 444444333333
No 162
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.55 E-value=8.8 Score=41.39 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=59.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.|+|+.-|..++..++.... .++.+..++|+....+....+. ...+|||||-- + ...+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~-~~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G-ARGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G-TSSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----h-hcCCCcc
Confidence 356899999999999999999988754 3578889999987665543332 45899999962 2 3467888
Q ss_pred CccEEEEeCC
Q 009212 420 NLRCAILDEV 429 (540)
Q Consensus 420 ~i~~LVlDEa 429 (540)
.+++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8999887554
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.43 E-value=3.1 Score=43.97 Aligned_cols=16 Identities=44% Similarity=0.511 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
.++++.+|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4799999999999964
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.10 E-value=3.2 Score=43.74 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.|.-+++.|++|+|||.. ++-+...+
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~ 227 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNV 227 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456788899999999964 44444433
No 165
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=81.64 E-value=2.5 Score=38.65 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=44.5
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHH---Hhhc-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQL---ENLQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~---~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.++++.-+..+...++.. ++.+..++|+....+.. ..+. ...+|||+|- .+ ...+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCcc
Confidence 3567999999999999999888764 35788888887654432 2222 3578999993 22 2356778
Q ss_pred CccEEEE
Q 009212 420 NLRCAIL 426 (540)
Q Consensus 420 ~i~~LVl 426 (540)
.++++|.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 166
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.46 E-value=4 Score=38.07 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCCchhhcHH
Q 009212 304 EGKSCILADQSGSGKTLAYLL 324 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayll 324 (540)
.|.-+++.+|+|+|||.....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 457789999999999975443
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.44 E-value=2.5 Score=43.37 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=25.6
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
.|.-+++.+|+|+|||.. ++.++..+.. .+..++|+..-.
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~-----------~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQK-----------MGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHH-----------TTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh-----------cCCeEEEEeccc
Confidence 356788999999999954 4455444432 133577776543
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.55 E-value=1.9 Score=44.02 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCCchhhc
Q 009212 304 EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlay 322 (540)
.|+-+++.+++|+|||...
T Consensus 60 ~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp TTSEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4577999999999999653
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.33 E-value=9.9 Score=34.69 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCchhhcH
Q 009212 304 EGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayl 323 (540)
.|.-+++.+++|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35678899999999997543
No 170
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.27 E-value=2.3 Score=46.04 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999964
No 171
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.47 E-value=7.9 Score=39.15 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=54.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.+++++.+..+++.+++. ++.+..++|+....++...+. ...+|||+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCcc
Confidence 4668999999999999999988765 457888999887665543332 3578999995 333 367788
Q ss_pred CccEEEE
Q 009212 420 NLRCAIL 426 (540)
Q Consensus 420 ~i~~LVl 426 (540)
.++++|.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8988875
No 172
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.21 E-value=4.5 Score=50.45 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHc------CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCH
Q 009212 299 FPPVVE------GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTA 355 (540)
Q Consensus 299 ip~il~------G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptr 355 (540)
+..++. |+++++.+|+|+|||...+-.+.... ..+.+++++..-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~------------~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------------REGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH------------TTTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------------HcCCcEEEEEccc
Confidence 556666 68999999999999986544333222 1355688877553
No 173
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.91 E-value=6.2 Score=39.13 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
++-+++++++|+|||...
T Consensus 105 g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SSEEEEEESTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567888999999999754
No 174
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.65 E-value=4.8 Score=42.98 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=38.5
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhc
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSK 370 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~ 370 (540)
.|....+.+-||||||++.. .+ ... .+..+|||+|+..+|.|+++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a--~l---~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA--EI---AER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH--HH---HHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHH--HH---HHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678889999999997522 21 111 122389999999999999999998853
No 175
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.15 E-value=1.4 Score=38.54 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=17.6
Q ss_pred HHHcCCcEEEEcCCCCCchhh
Q 009212 301 PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTla 321 (540)
....+.++++.+++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678999999999999964
No 176
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.08 E-value=3.7 Score=46.11 Aligned_cols=26 Identities=15% Similarity=0.246 Sum_probs=18.4
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
..+|+|||+|.+. ......+..++..
T Consensus 580 ~~vl~lDEi~~~~--~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 580 YSVVLLDAIEKAH--PDVFNILLQVLED 605 (758)
T ss_dssp SSEEEEECGGGSC--HHHHHHHHHHHHH
T ss_pred CeEEEEeCccccC--HHHHHHHHHHhcc
Confidence 3479999999885 4555566666654
No 177
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=77.37 E-value=37 Score=33.51 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=63.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
...++||.++++.-+..+++.++.. ++.+..++|+....++...+ . ...+|||+|.- + ...+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----L-ARGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----G-SSSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h-hcCCCcc
Confidence 3568999999999999999988875 35678889988765543333 2 35789999952 2 3467888
Q ss_pred CccEEEEeCCcccCC-CCCHHHHHHHH
Q 009212 420 NLRCAILDEVDILFN-DEDFEVALQSL 445 (540)
Q Consensus 420 ~i~~LVlDEad~ll~-d~~f~~~i~~I 445 (540)
.++++|.-+...+.. .......++++
T Consensus 311 ~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 337 (395)
T 3pey_A 311 TVSMVVNYDLPTLANGQADPATYIHRI 337 (395)
T ss_dssp TEEEEEESSCCBCTTSSBCHHHHHHHH
T ss_pred cCCEEEEcCCCCCCcCCCCHHHhhHhc
Confidence 999998766654331 11344555555
No 178
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=76.22 E-value=8.2 Score=36.16 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEc
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILA 352 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~ 352 (540)
..+++..++|.|||.+.+--++..+. .+-+++|+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g------------~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG------------HGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH------------TTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------------CCCeEEEEE
Confidence 48999999999999987766666653 255788874
No 179
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=76.21 E-value=8.6 Score=38.24 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=53.1
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc----CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ----EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~----~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|++++-+..++..+... ++.+..++|+....++...+. ...+|+|||- .+ ...+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccc
Confidence 457999999999999888887754 467889999987766544442 3578999994 22 34677888
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 888875
No 180
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.75 E-value=3 Score=40.88 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.2
Q ss_pred HcCCcEEEEcCCCCCchhhc
Q 009212 303 VEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlay 322 (540)
..|.-+++.+++|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 35677889999999999653
No 181
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.73 E-value=7.8 Score=38.15 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=53.3
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.+++++-+..+++.++.. ++.+..++|+....+....+ . ...+|||+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcc
Confidence 3567999999999999999988875 35788889887765543333 2 3578999994 2333 56677
Q ss_pred CccEEEEe
Q 009212 420 NLRCAILD 427 (540)
Q Consensus 420 ~i~~LVlD 427 (540)
.++++|.-
T Consensus 306 ~~~~Vi~~ 313 (367)
T 1hv8_A 306 DLNCVINY 313 (367)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 88888763
No 182
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.56 E-value=12 Score=38.02 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=51.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeC--------CcchHHHHH---hhc-CCCcEEEeChHHHHHHH
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLE---NLQ-EGVDVLIATPGRFMFLI 411 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~G--------g~~~~~q~~---~l~-~~~dIlVaTP~rL~~ll 411 (540)
.+.++||.++++.-+..+++.+... ++.+..++| +....++.. .+. ..++|||+|-- +
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~-----~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV-----G 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG-----G
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCc-----c
Confidence 3568999999999999999988876 357788888 554433322 222 34789999942 2
Q ss_pred HhccccCCCccEEEEeC
Q 009212 412 KEGILQLINLRCAILDE 428 (540)
Q Consensus 412 ~~~~~~l~~i~~LVlDE 428 (540)
...+++..++++|+-+
T Consensus 430 -~~Gldl~~~~~Vi~~d 445 (494)
T 1wp9_A 430 -EEGLDVPEVDLVVFYE 445 (494)
T ss_dssp -GGGGGSTTCCEEEESS
T ss_pred -ccCCCchhCCEEEEeC
Confidence 3467788898888643
No 183
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=75.26 E-value=19 Score=37.73 Aligned_cols=92 Identities=10% Similarity=0.046 Sum_probs=59.6
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh---h-cCCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---L-QEGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l-~~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+...+|++...+-+..+.+.+...+ .++..++|+....+.... + ....+|||+|+..+ ...+++..
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY-----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STGISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC-----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHSCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hccccccc
Confidence 4456666666777777777766543 378889998876544322 2 24578999997655 33668889
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHh
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLISS 448 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~~ 448 (540)
++++|+..++.-. ..+.+.+-+.-+.
T Consensus 417 v~~vi~~~~~~s~--~~~~Q~~GR~gR~ 442 (510)
T 2oca_A 417 LHHVVLAHGVKSK--IIVLQTIGRVLRK 442 (510)
T ss_dssp EEEEEESSCCCSC--CHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCH--HHHHHHHhccccc
Confidence 9999998877432 2344444444443
No 184
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.26 E-value=9.4 Score=38.40 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=54.7
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|+++.-+..++..+... ++.+..++|+....++...+ . ...+|||+|.- + ...+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----C-ARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----G-TSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----c-ccCCCccC
Confidence 457999999999999999988876 35678889988766554333 2 35789999952 2 34678889
Q ss_pred ccEEEEeC
Q 009212 421 LRCAILDE 428 (540)
Q Consensus 421 i~~LVlDE 428 (540)
++++|.-.
T Consensus 335 ~~~Vi~~~ 342 (412)
T 3fht_A 335 VSVVINFD 342 (412)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 99988533
No 185
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=74.12 E-value=27 Score=34.62 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=59.9
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.+++++.+..+++.+... ++.+..++|+....+....+ . ...+|||+|.- + ...+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-----C-SSCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-----h-hcCCCcc
Confidence 3568999999999999999988765 35778889887765543333 2 35789999942 2 3467788
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
.++++|.-... ......++++
T Consensus 318 ~~~~Vi~~~~p-----~s~~~~~Qr~ 338 (391)
T 1xti_A 318 RVNIAFNYDMP-----EDSDTYLHRV 338 (391)
T ss_dssp TEEEEEESSCC-----SSHHHHHHHH
T ss_pred cCCEEEEeCCC-----CCHHHHHHhc
Confidence 89998874442 3444455554
No 186
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=73.40 E-value=5.1 Score=47.47 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=61.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh---hc-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.+++|+|++++-+..+++.++++. .++++..++|+....+.... +. ..++|||||- .+ ...+++.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~-e~GiDip 881 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIP 881 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TT-GGGSCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-eeeeccc
Confidence 36789999999999999999998874 35788999999876554333 32 4589999996 22 3467889
Q ss_pred CccEEEEeCCccc
Q 009212 420 NLRCAILDEVDIL 432 (540)
Q Consensus 420 ~i~~LVlDEad~l 432 (540)
+++++|+..++.+
T Consensus 882 ~v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 882 TANTIIIERADHF 894 (1151)
T ss_dssp TEEEEEETTTTSS
T ss_pred CCcEEEEeCCCCC
Confidence 9999998777643
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=73.21 E-value=3.2 Score=43.19 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
...++++.|+||||||..+ ..++..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~ 77 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTG 77 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHH
Confidence 4579999999999999874 3444444
No 188
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=73.17 E-value=15 Score=40.57 Aligned_cols=91 Identities=11% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|+|+..+..+.+.+... ++.+..++|+....+....+ . ...+|+|||-- + ...+++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l-~~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----L-REGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----C-STTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----h-hCCcccCC
Confidence 568999999999999999888875 35777888887665554443 2 35899999852 2 34677889
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHH
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLI 446 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il 446 (540)
++++|+=++|...-.......++++=
T Consensus 514 v~lVi~~d~d~~G~p~s~~~~iQr~G 539 (661)
T 2d7d_A 514 VSLVAILDADKEGFLRSERSLIQTIG 539 (661)
T ss_dssp EEEEEETTTTCCTTTTSHHHHHHHHH
T ss_pred CCEEEEeCcccccCCCCHHHHHHHhC
Confidence 99999998886531123445555543
No 189
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.87 E-value=14 Score=40.82 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=62.7
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHh---hc-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLEN---LQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~---l~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|+|+..+..+.+.+... ++.+..++|+....+.... +. ...+|+|||-- + ...+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l-~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L-REGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C-CTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h-hcCccCCC
Confidence 458999999999999999988875 3567778888766555443 33 34799999842 2 34677889
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
++++|+=++|...-.......++++
T Consensus 508 v~lVI~~d~d~~G~p~s~~~~iQr~ 532 (664)
T 1c4o_A 508 VSLVAILDADKEGFLRSERSLIQTI 532 (664)
T ss_dssp EEEEEETTTTSCSGGGSHHHHHHHH
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHH
Confidence 9999998887642012344444444
No 190
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=70.29 E-value=20 Score=35.85 Aligned_cols=71 Identities=10% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.+++++-+..+++.++..+ +.+..++|+....++...+ . ...+|||+|- .+ ...+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG-----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT-----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC-----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 4589999999999999999988763 5678888888765543333 2 3478999994 22 34677888
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 327 ~~~Vi~ 332 (400)
T 1s2m_A 327 VNVVIN 332 (400)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 988875
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=69.24 E-value=8.7 Score=38.31 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHH-HHHHHHHHHhh
Q 009212 305 GKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAEL-ASQVLSNCRSL 368 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreL-a~Qi~~~l~~l 368 (540)
|.-+++.+++|+|||...+--+.+...... ....+..++|+.-...+ ..++.+.++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~------~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPE------KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGG------GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccc------cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999654332222111000 00114467887654332 44555555544
No 192
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=68.68 E-value=14 Score=38.15 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=52.6
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCCcc
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINLR 422 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~ 422 (540)
++||.|+++.-|..+++.+... ++.+..++|+....+....+ . ..++|||||-- + ...+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v-----~-~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV-----A-SRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG-----G-TSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh-----h-hCCCCcccCC
Confidence 3999999999999999888765 45788899998766554433 2 35799999962 2 3467888899
Q ss_pred EEEE
Q 009212 423 CAIL 426 (540)
Q Consensus 423 ~LVl 426 (540)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 193
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.25 E-value=20 Score=35.53 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=29.4
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRS 367 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~ 367 (540)
.|.=+++.|++|+|||.. ++-+...+... +..++|+.-- +-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl-~l~ia~~~a~~-----------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF-ALKQAKNMSDN-----------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHHHTT-----------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHc-----------CCeEEEEECC-CCHHHHHHHHHH
Confidence 456688899999999954 34443333221 2457777633 444455544443
No 194
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=68.12 E-value=15 Score=37.08 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=52.7
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCCc
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLINL 421 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~i 421 (540)
.++||.|+++.-+..+++.+... ++.+..++|+....+....+ . ...+|||+|.- + ...+++..+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidi~~v 345 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----W-ARGLDVPQV 345 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----G-SSSCCCTTE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----h-hCcCCcccC
Confidence 47999999999999999888765 35778889988765543333 2 35789999962 2 346788899
Q ss_pred cEEEE
Q 009212 422 RCAIL 426 (540)
Q Consensus 422 ~~LVl 426 (540)
+++|.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98876
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=67.82 E-value=12 Score=40.79 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=54.2
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh----cCCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l----~~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.|+++.-+.+++..+... ++.+..++|+....+....+ ....+|||+|-- + ...+++.
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-----~-~~GID~p 334 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL-----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-----F-GMGIDKP 334 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-----S-CTTCCCS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-hcCCCcc
Confidence 4568999999999999999998875 45788899998766553333 245799999952 2 3366788
Q ss_pred CccEEEE
Q 009212 420 NLRCAIL 426 (540)
Q Consensus 420 ~i~~LVl 426 (540)
++++||.
T Consensus 335 ~V~~VI~ 341 (591)
T 2v1x_A 335 DVRFVIH 341 (591)
T ss_dssp CEEEEEE
T ss_pred cccEEEE
Confidence 8988874
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=67.37 E-value=5.9 Score=38.48 Aligned_cols=44 Identities=25% Similarity=0.417 Sum_probs=30.4
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH---------HcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPV---------VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~i---------l~G~dvlv~ApTGSGKTla 321 (540)
.+|.++.-.+..++.|.+.= .+|.. ..++.+++.+|+|+|||..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 57888887888877775420 01111 1357899999999999975
No 197
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.85 E-value=8.3 Score=47.38 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcc
Q 009212 306 KSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFR 385 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~ 385 (540)
+-+.+.+|.|||||... ++++....+ .+-.|+++.+-.+|.... +++++- ++.
T Consensus 1432 ~~iei~g~~~sGkttl~-~~~~a~~~~-----------~g~~~~~i~~e~~~~~~~---~~~~Gv---~~~--------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLT-LQVIAAAQR-----------EGKTCAFIDAEHALDPIY---ARKLGV---DID--------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHH-HHHHHHHHH-----------TTCCEEEECTTSCCCHHH---HHHTTC---CGG---------
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHHHHh-----------cCCeEEEEecCCCCCHHH---HHHcCC---CHH---------
Confidence 67999999999999764 444443333 255688888876664443 555542 221
Q ss_pred hHHHHHhhcCCCcEEEeChHHHHHHHHh--ccccCCCccEEEEeCCcccCCC------CC----------HHHHHHHHHH
Q 009212 386 QKTQLENLQEGVDVLIATPGRFMFLIKE--GILQLINLRCAILDEVDILFND------ED----------FEVALQSLIS 447 (540)
Q Consensus 386 ~~~q~~~l~~~~dIlVaTP~rL~~ll~~--~~~~l~~i~~LVlDEad~ll~d------~~----------f~~~i~~Il~ 447 (540)
+++|+-|+.-.+.|.. ..+.-..+++||||.+..+... ++ +...++++..
T Consensus 1485 ------------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~ 1552 (1706)
T 3cmw_A 1485 ------------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1552 (1706)
T ss_dssp ------------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHH
T ss_pred ------------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHH
Confidence 2666667443322211 1122235789999999988741 11 3444666666
Q ss_pred hCCCCCcEEEEeccCCHHH
Q 009212 448 SSPVTAQYLFVTATLPVEI 466 (540)
Q Consensus 448 ~l~~~~Q~ll~SATlp~~i 466 (540)
.+.+..-+++|...+...+
T Consensus 1553 ~~~~~~~~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1553 NLKQSNTLLIFINQIRMKI 1571 (1706)
T ss_dssp HHHHHTCEEEEEECBC---
T ss_pred HHHhCCcEEEEeecccccc
Confidence 6665666777777765443
No 198
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.23 E-value=15 Score=41.87 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
..++++++|+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 35899999999999964
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=65.93 E-value=5.2 Score=39.41 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=31.2
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQA-MAFPP--VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~-~aip~--il~G~dvlv~ApTGSGKTla 321 (540)
.+|++++-.+.+++.|.+.- . .|+.. +.+.. +..++.+++.+|+|+|||..
T Consensus 12 ~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 57889887787777775520 0 00000 01111 12457899999999999975
No 200
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=65.75 E-value=15 Score=39.18 Aligned_cols=85 Identities=11% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh----cCCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL----QEGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l----~~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|+|+.-+.++++.++.. ++.+..++|+....+....+ ....+|||||.- + ...+++.+
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~-----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-----~-~~GiD~p~ 304 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK-----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----F-GMGINKPN 304 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----S-CTTTCCTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC-----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-hCCCCccC
Confidence 457999999999999999988875 35788899988765443322 245899999962 2 33567888
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHH
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSL 445 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~I 445 (540)
++++|.=.. ..+....++++
T Consensus 305 v~~VI~~~~-----p~s~~~y~Qr~ 324 (523)
T 1oyw_A 305 VRFVVHFDI-----PRNIESYYQET 324 (523)
T ss_dssp CCEEEESSC-----CSSHHHHHHHH
T ss_pred ccEEEEECC-----CCCHHHHHHHh
Confidence 998876322 23455555554
No 201
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=63.94 E-value=5.8 Score=36.95 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHHcCC--cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHH
Q 009212 291 PSQIQAMAFPPVVEGK--SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVL 362 (540)
Q Consensus 291 ptpiQ~~aip~il~G~--dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~ 362 (540)
.++-|..++..++... =.++.++-|++|+-..+--++..... .|.++.+|+|+..-.....
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-----------~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-----------QGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-----------TTCCEEEECSTTHHHHHHS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-----------cCeEEEEEcCchHHHHHHH
Confidence 4567899998887543 46667899999998865444433322 3678999999988655543
No 202
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.75 E-value=4.5 Score=42.61 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.|.=+++.|++|+|||.. ++-+...+
T Consensus 196 ~G~liiIaG~pG~GKTtl-al~ia~~~ 221 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAF-ALKQAKNM 221 (444)
T ss_dssp SSCEEEEEECSSSSHHHH-HHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHH
Confidence 445688899999999965 44444433
No 203
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=67.49 E-value=1.5 Score=39.46 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|+++..+..++..++.. ++.+..++|+....+....+ . ...+|||+|. .+. ..+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA-RGIDIPD 98 (170)
Confidence 357999999999999988888765 35677788877655443333 2 2468999993 222 3456667
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 99 ~~~Vi~ 104 (170)
T 2yjt_D 99 VSHVFN 104 (170)
Confidence 777765
No 204
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=63.30 E-value=2.5 Score=40.19 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=28.9
Q ss_pred ccccccCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~g--f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
.+|+++.-.+.+.+.|.+.- +..+..+... .+...+.+++.+|+|+|||..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHH
Confidence 46788777777776665420 1111111111 012346899999999999975
No 205
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=63.21 E-value=3.6 Score=41.86 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=28.0
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|.=+++.|++|+|||.. ++-+...+.. .+..++|+..- .-..|+...+
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~-----------~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALN-----------DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH-----------TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH-----------cCCeEEEEeCC-CCHHHHHHHH
Confidence 345688889999999964 4444433332 13457776542 3344444444
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.83 E-value=7.3 Score=41.01 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=34.4
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~---gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
+..+|++++-.++..+.|.+. -+..|--++...+ ..-+.+|+.+|+|+|||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHH
Confidence 456899999888888877552 1112222222111 1237899999999999975
No 207
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=62.56 E-value=9.3 Score=39.76 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=46.0
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
+.++||.||+++-+..+++.+++. ++++..++|+... .....+. ...+|||||- .+. ..+++. +.+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT~-----v~e-~GiDip-~~~ 237 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITTD-----ISE-MGANFK-ADR 237 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTHH-HHTTHHHHSCCSEEEECG-----GGG-TSCCCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccHH-HHHHhhcCCCCeEEEECc-----hHH-cCcccC-CcE
Confidence 346999999999999999988876 3578888887432 2233332 4589999996 233 345555 555
Q ss_pred E
Q 009212 424 A 424 (540)
Q Consensus 424 L 424 (540)
|
T Consensus 238 V 238 (431)
T 2v6i_A 238 V 238 (431)
T ss_dssp E
T ss_pred E
Confidence 4
No 208
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=61.56 E-value=9.5 Score=39.83 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=46.0
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
+.++||.||+++-|.++++.++.. ++++..++|.... .....+. ...+|||||.- + ...+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~v-----~-e~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFE-REYPTIKQKKPDFILATDI-----A-EMGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC---------CCCSEEEESSS-----T-TCCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHH-HHHhhhcCCCceEEEECCh-----h-heeeccC-ceE
Confidence 457999999999999999988875 3578888885433 3333443 34799999952 2 3456677 888
Q ss_pred EE
Q 009212 424 AI 425 (540)
Q Consensus 424 LV 425 (540)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 209
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=60.05 E-value=8.5 Score=39.31 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCCchhhcH
Q 009212 304 EGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayl 323 (540)
.|+-+++.+++|+|||...+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45789999999999997543
No 210
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=59.42 E-value=12 Score=37.15 Aligned_cols=18 Identities=33% Similarity=0.254 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
|.-+++.+++|+|||...
T Consensus 98 g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999653
No 211
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=59.08 E-value=5.4 Score=40.98 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=19.4
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566788987 555689999999874
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=59.01 E-value=17 Score=36.77 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=50.3
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcch
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQ 386 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~ 386 (540)
-+++.+|.|+|||.. ++.++...... ..+.+++|+..-..+.. . .++.++- +..
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~---------g~g~~vlyId~E~s~~~-~--ra~~lGv---d~d---------- 83 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ---------YPDAVCLFYDSEFGITP-A--YLRSMGV---DPE---------- 83 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH---------CTTCEEEEEESSCCCCH-H--HHHHTTC---CGG----------
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc---------CCCceEEEEeccchhhH-H--HHHHhCC---CHH----------
Confidence 478899999999965 34444443321 12457888876555432 2 3455532 111
Q ss_pred HHHHHhhcCCCcEEEeChHHHHHH----HHh-ccccCCCccEEEEeCCcccC
Q 009212 387 KTQLENLQEGVDVLIATPGRFMFL----IKE-GILQLINLRCAILDEVDILF 433 (540)
Q Consensus 387 ~~q~~~l~~~~dIlVaTP~rL~~l----l~~-~~~~l~~i~~LVlDEad~ll 433 (540)
++++..|..+..+ +.. ..+.-..+++||||=+..|.
T Consensus 84 -----------~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 84 -----------RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp -----------GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred -----------HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 2445544433333 211 01233468899999999886
No 213
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=58.96 E-value=6.8 Score=42.08 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=24.2
Q ss_pred HHHCCCCCCcHHHHHHHH-HHHcCCcEEEEcCCCCCchhh
Q 009212 283 LKRQNFLRPSQIQAMAFP-PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 283 L~~~gf~~ptpiQ~~aip-~il~G~dvlv~ApTGSGKTla 321 (540)
|.+.|. +++.+..-+. .+..|..+++++|||||||..
T Consensus 239 l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 239 LIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 444452 3333333333 356788999999999999964
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.91 E-value=10 Score=35.95 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=29.6
Q ss_pred ccccccCCCHHHHHHHHHC-C-CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 268 KSFKELGCSDYMIESLKRQ-N-FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~-g-f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
.+|+++.-.+.+++.|.+. . +..+..++... ....+.+++.+|+|+|||..
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHH
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHH
Confidence 5799988888877776542 0 00010000000 11245799999999999965
No 215
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=58.53 E-value=6.8 Score=34.33 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
.+.+++.+++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46899999999999975
No 216
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.34 E-value=10 Score=38.26 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCCchhhc
Q 009212 304 EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlay 322 (540)
...++++.+|+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999753
No 217
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=57.50 E-value=6.4 Score=39.43 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=28.1
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhc
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlay 322 (540)
..+|+++--.+..++.+.. .+..+. .++.+++.+|+|+|||...
T Consensus 40 ~~~~~~ivG~~~~~~~l~~------------l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGV------------VLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccChHHHHHHHHH------------HHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 3457777666666655432 122222 2468999999999999753
No 218
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.88 E-value=1.3e+02 Score=29.72 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
++-+++.+++|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 44577899999999964
No 219
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.82 E-value=6.4 Score=39.79 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3455678887 556789999999874
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=56.40 E-value=17 Score=35.07 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
...++++.+|+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 357899999999999965
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=56.38 E-value=6.1 Score=37.79 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.3
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
..+.++++.+++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567999999999999964
No 222
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.35 E-value=24 Score=34.07 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCC
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLI 419 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~ 419 (540)
.+.++||.+++++-+..+++.++ .+..++|+....+....+ . ...+|||+|. .+. ..+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCcc
Confidence 45679999999998877766554 356677777655543333 2 3579999995 333 467788
Q ss_pred CccEEEEeC
Q 009212 420 NLRCAILDE 428 (540)
Q Consensus 420 ~i~~LVlDE 428 (540)
.++++|.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 899888633
No 223
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=56.31 E-value=11 Score=40.25 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 279 MIESLKRQNFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 279 ll~~L~~~gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
+...|.. .+..-..+=..++-.+..+.++++.+|+|+|||..
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3344443 33333334445555677889999999999999964
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=56.05 E-value=9.9 Score=35.37 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=30.3
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
.|.-+++.|++|+|||...+--+.+.+... +..++|+.- .+-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-----------~~~v~~~s~-E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-----------GEPGVFVTL-EERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-----------CCCceeecc-cCCHHHHHHHHHHc
Confidence 456789999999999964332233323222 223666553 33455565555544
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=55.43 E-value=6.6 Score=40.15 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.5
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
..+.-+++++|||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4556789999999999964
No 226
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=54.86 E-value=20 Score=35.20 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHHcCC-----cEEEEcCCCCCchhhcH
Q 009212 277 DYMIESLKRQNFLRPSQIQAMA-FPPVVEGK-----SCILADQSGSGKTLAYL 323 (540)
Q Consensus 277 ~~ll~~L~~~gf~~ptpiQ~~a-ip~il~G~-----dvlv~ApTGSGKTlayl 323 (540)
..+.+.|+-.||. +++-.. +...+.++ .+++.+|.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677888777764 566333 44566654 48999999999997643
No 227
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=54.61 E-value=7.2 Score=40.09 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=18.8
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455678887 555689999999764
No 228
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=54.53 E-value=16 Score=45.69 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=64.7
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|+++++.+++|+|||...+..+.+.+. .+-+++|+. ..++..+++ ...++..-..+. +. .
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k------------~Ge~~~Fit-~ee~~~~L~--a~~~G~dl~~l~---~~-~ 1140 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR------------EGKTCAFID-AEHALDPIY--ARKLGVDIDNLL---CS-Q 1140 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT------------TTCCEEEEC-TTSCCCHHH--HHHTTCCTTTCE---EE-C
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH------------cCCeEEEEE-ccccHHHHH--HHHcCCChhHhe---ee-c
Confidence 4689999999999999865544444332 245577775 445555555 334432111111 11 0
Q ss_pred cchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccEEEEeCCcccCC---------C--C-----CHHHHHHHHHH
Q 009212 384 FRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRCAILDEVDILFN---------D--E-----DFEVALQSLIS 447 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~---------d--~-----~f~~~i~~Il~ 447 (540)
....+ .-.++...+.+ ....++|||||+..+.. + . .+...+.++..
T Consensus 1141 pd~~e--------------~~~~i~~~l~~----~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~ 1202 (2050)
T 3cmu_A 1141 PDTGE--------------QALEICDALAR----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1202 (2050)
T ss_dssp CSSHH--------------HHHHHHHHHHH----HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHHHH----hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 00000 01122223322 34688999999987731 0 0 13344566666
Q ss_pred hCCCCCcEEEEeccC
Q 009212 448 SSPVTAQYLFVTATL 462 (540)
Q Consensus 448 ~l~~~~Q~ll~SATl 462 (540)
.+....-+++++...
T Consensus 1203 ~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1203 NLKQSNTLLIFINQI 1217 (2050)
T ss_dssp HHHTTTCEEEEEECC
T ss_pred HHHhCCeEEEEecCC
Confidence 555556666666543
No 229
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=54.35 E-value=7.4 Score=39.78 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=18.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455678887 555789999999874
No 230
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=54.27 E-value=32 Score=35.87 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=46.3
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeC--------CcchHHH---HHhhcC--CCcEEEeChHHHHHHH
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQ---LENLQE--GVDVLIATPGRFMFLI 411 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~G--------g~~~~~q---~~~l~~--~~dIlVaTP~rL~~ll 411 (540)
..++||.++++..+..+.+.+...+.. ..+++..++| +....++ ...+.+ .++|||||-- +
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~-----~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPAL-SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSV-----A 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGG-TTCCEEECCC--------------------------CCSEEEECCC-----T
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCc-CceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcch-----h
Confidence 568999999999999999999886532 2345555554 4443333 233333 4789999952 2
Q ss_pred HhccccCCCccEEEE
Q 009212 412 KEGILQLINLRCAIL 426 (540)
Q Consensus 412 ~~~~~~l~~i~~LVl 426 (540)
...+++..+++||.
T Consensus 463 -~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 -DEGIDIAECNLVIL 476 (555)
T ss_dssp -TCCEETTSCSEEEE
T ss_pred -hcCCccccCCEEEE
Confidence 34678889998876
No 231
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=54.26 E-value=12 Score=34.88 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 291 PSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 291 ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
-+.-|..++..+..|.-+.+.+|+|+|||..
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 3445677787888899999999999999974
No 232
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.17 E-value=7.5 Score=39.37 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 297 ~aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
..+..++.|.| ++..++||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35566788987 555789999999874
No 233
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=54.07 E-value=7.1 Score=39.84 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=18.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455678887 455789999999874
No 234
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=54.03 E-value=7 Score=40.10 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.0
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4556778987 455689999999764
No 235
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=53.92 E-value=7.4 Score=39.93 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.5
Q ss_pred HHHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 297 ~aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
..+..++.|.| ++..++||||||...
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34566788987 455689999999874
No 236
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.77 E-value=8 Score=40.30 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667889987 455689999999875
No 237
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=53.77 E-value=10 Score=38.73 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=27.2
Q ss_pred CccEEEEeCCcccCC--CCCHHHHHHHHHHhCCC-CCcEEEEeccC
Q 009212 420 NLRCAILDEVDILFN--DEDFEVALQSLISSSPV-TAQYLFVTATL 462 (540)
Q Consensus 420 ~i~~LVlDEad~ll~--d~~f~~~i~~Il~~l~~-~~Q~ll~SATl 462 (540)
.-.++|+||||.++. ...+...+..+++...+ ..-+++.|..+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~ 307 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNV 307 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCH
Confidence 346789999999983 13366677777776654 33444444444
No 238
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=53.65 E-value=7.5 Score=40.11 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=18.8
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 4455778887 455689999999874
No 239
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.62 E-value=7.4 Score=39.81 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=19.3
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556778987 455689999999875
No 240
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.61 E-value=26 Score=39.45 Aligned_cols=76 Identities=11% Similarity=0.153 Sum_probs=55.6
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhh------cCCCCceEEEEeCCcchHHHHHhhcC---------CCcEEEeChHHHHH
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLS------KCGVPFRSMVVTGGFRQKTQLENLQE---------GVDVLIATPGRFMF 409 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~------~~~~~l~v~~l~Gg~~~~~q~~~l~~---------~~dIlVaTP~rL~~ 409 (540)
...+||.+|+++-+.++++.+.+.. ....++.+..++|+....++...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5689999999999999998887522 11246789999999988777655532 358999995
Q ss_pred HHHhccccCCCccEEEE
Q 009212 410 LIKEGILQLINLRCAIL 426 (540)
Q Consensus 410 ll~~~~~~l~~i~~LVl 426 (540)
.+. ..+++..+++||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 223 3667788887663
No 241
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=53.58 E-value=7.5 Score=39.70 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.0
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4555778887 555789999999875
No 242
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=53.51 E-value=7.6 Score=40.57 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=18.9
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4455778887 555689999999874
No 243
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.13 E-value=8.3 Score=39.25 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=18.9
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3455778887 455689999999874
No 244
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=53.00 E-value=8.3 Score=39.62 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=18.9
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3455678887 555789999999874
No 245
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=52.79 E-value=7.6 Score=39.78 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=18.3
Q ss_pred HHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 299 FPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 299 ip~il~G~d--vlv~ApTGSGKTlay 322 (540)
+..++.|.| ++..++||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 445678887 555789999999874
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=52.61 E-value=82 Score=32.79 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
++-+++++++|+|||...
T Consensus 98 ~~vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA 115 (425)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345777899999999653
No 247
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=52.58 E-value=17 Score=40.43 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=48.2
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
+.++||.||+++-+.++++.++.. ++++..++|.. .......+. ...+|||||-- + ...+++. +++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTdv-----~-e~GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTDI-----S-EMGANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECGG-----G-GTTCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChHH-HHHHHHHHHCCCceEEEECch-----h-hcceeeC-CcE
Confidence 567999999999999999888765 46788888853 233334444 35799999952 2 3356667 777
Q ss_pred EE
Q 009212 424 AI 425 (540)
Q Consensus 424 LV 425 (540)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 248
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.34 E-value=7.7 Score=39.70 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455778887 555689999999874
No 249
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=52.22 E-value=29 Score=37.18 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=13.2
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
.-+.+++++|+|||..
T Consensus 294 eVI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTT 309 (503)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCcccHHHH
Confidence 3577889999999974
No 250
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=52.03 E-value=7.5 Score=40.08 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=18.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 4455678887 555789999999764
No 251
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=51.94 E-value=7.1 Score=40.23 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5566788987 455689999999874
No 252
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=51.75 E-value=5.4 Score=39.54 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHcCCcEEEEcCCCCCchhh
Q 009212 298 AFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 298 aip~il~G~dvlv~ApTGSGKTla 321 (540)
+.-.+..+.++++.+|+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334456789999999999999964
No 253
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.32 E-value=10 Score=39.83 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=29.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----cCCcEEEEcCCCCCchhhc
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV----EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il----~G~dvlv~ApTGSGKTlay 322 (540)
...|+++.-.+++++.+... +..+. .++++++.+|+|+|||...
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~------------~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVI------------VELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEESCHHHHHHHHHH------------HHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccCHHHHHHHHHHH------------HHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 34577777677776655431 11222 3468999999999999764
No 254
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=51.22 E-value=1.1e+02 Score=29.95 Aligned_cols=51 Identities=18% Similarity=0.046 Sum_probs=26.8
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKL 470 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l 470 (540)
..+++|||+.-.+.-|......+..+...+....-++.+.++-..+..+.+
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 230 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHH
Confidence 567999999955431322334444444443333334556666554444433
No 255
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=50.96 E-value=8.8 Score=40.52 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 297 ~aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
..+..++.|.| ++..++||||||+..
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34555678887 555789999999875
No 256
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.79 E-value=8.1 Score=40.41 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred HHHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 297 ~aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
..+..++.|.| ++..++||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 35677889987 455689999999874
No 257
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=50.42 E-value=7.2 Score=39.80 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=19.7
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666788987 455689999999875
No 258
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.23 E-value=11 Score=39.41 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCCchhhcH
Q 009212 306 KSCILADQSGSGKTLAYL 323 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlayl 323 (540)
+.+++++++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 478899999999996543
No 259
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.94 E-value=4.9 Score=41.98 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=33.2
Q ss_pred ccccccccCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 266 SRKSFKELGCSDYMIESLKRQ-N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~-g--f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
+..+|++.|--++..+.|++. - +..|--++... +.--+.+|+.+|+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHH
Confidence 346899998888887777653 1 11111111111 11237899999999999975
No 260
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=49.75 E-value=9.6 Score=39.51 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=19.5
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhcH
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAYL 323 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlayl 323 (540)
.+..++.|.| ++..++||||||....
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 4556778887 5557899999998753
No 261
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=49.72 E-value=12 Score=37.79 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=29.9
Q ss_pred ccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH---------HHcCCcEEEEcCCCCCchhhc
Q 009212 268 KSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPP---------VVEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~---------il~G~dvlv~ApTGSGKTlay 322 (540)
.+|.++.-...+++.|.+.= .+|. ....+.+++.+|+|+|||...
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIV----------VWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHT----------HHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHH----------HHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 46888877777777765420 1111 123468999999999999753
No 262
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=49.53 E-value=30 Score=40.05 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=61.6
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHhhcCC---CcEEEeChHHHHHHHHhcccc
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQEG---VDVLIATPGRFMFLIKEGILQ 417 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q---~~~l~~~---~dIlVaTP~rL~~ll~~~~~~ 417 (540)
.+.++||.|+++.-+..+...+... .++.+..++|+....+. +..+.++ ++|||+|- .+ ...++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~----~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v~-----~~GlD 571 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER----EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-IG-----SEGRN 571 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT----TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-CT-----TCSSC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-hh-----hcCCC
Confidence 3567999999999999988888753 24688899999765443 3344444 89999993 22 45678
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHH
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLI 446 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il 446 (540)
+..+.++|+-+.+ .+....++.+=
T Consensus 572 l~~~~~VI~~d~p-----~~~~~~~Q~~G 595 (968)
T 3dmq_A 572 FQFASHMVMFDLP-----FNPDLLEQRIG 595 (968)
T ss_dssp CTTCCEEECSSCC-----SSHHHHHHHHH
T ss_pred cccCcEEEEecCC-----CCHHHHHHHhh
Confidence 8899999876654 34444444443
No 263
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.43 E-value=7.6 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=17.8
Q ss_pred HHHHcCCc--EEEEcCCCCCchhhc
Q 009212 300 PPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 300 p~il~G~d--vlv~ApTGSGKTlay 322 (540)
..++.|.| ++..++||||||...
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44678887 555789999999875
No 264
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=48.20 E-value=15 Score=43.48 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=40.1
Q ss_pred cEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhh
Q 009212 307 SCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSL 368 (540)
Q Consensus 307 dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l 368 (540)
..+|.|.-|||||.+..-=++..+..............-.++|+|+=|+.-|.++.+.+++.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45999999999998866556655542100000000112346999999999999888877663
No 265
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.20 E-value=16 Score=34.51 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=29.8
Q ss_pred cccccccCCCHHHHHHHHHCC--CCCCcHHHHHHHHHHH--cCCcEEEEcCCCCCchhh
Q 009212 267 RKSFKELGCSDYMIESLKRQN--FLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~g--f~~ptpiQ~~aip~il--~G~dvlv~ApTGSGKTla 321 (540)
..+|+++...+.....++..- |.. ...+..+. -.+.+++.+|+|+|||..
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 357888877777766665431 111 11222211 124599999999999964
No 266
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=48.01 E-value=6.5 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.7
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
+.|+-+++++|+|+|||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567788999999999964
No 267
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=47.73 E-value=7.6 Score=39.63 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.1
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4555678887 555789999999874
No 268
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=47.65 E-value=2.2e+02 Score=28.22 Aligned_cols=53 Identities=6% Similarity=0.048 Sum_probs=34.9
Q ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHh
Q 009212 421 LRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEV 473 (540)
Q Consensus 421 i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~ 473 (540)
.+++++|.+..+-.+......+..+.+.+.....++++.++...++.+.+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45677888876543445666666666666566677888888776666655443
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=47.33 E-value=14 Score=38.51 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.-+++++|||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 455688999999999964
No 270
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=46.97 E-value=5.2 Score=38.21 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
.+.+++.+|+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 457999999999999753
No 271
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=46.95 E-value=21 Score=33.83 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CcEEEEcCCCCCchhhc
Q 009212 277 DYMIESLKRQNFLRPSQIQAMAFPPVVEG----KSCILADQSGSGKTLAY 322 (540)
Q Consensus 277 ~~ll~~L~~~gf~~ptpiQ~~aip~il~G----~dvlv~ApTGSGKTlay 322 (540)
..|.+.|+-.|+ .+..+ ..++..++.+ +.+++.+|.|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 456666665543 33333 3444455544 35899999999999653
No 272
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=46.78 E-value=10 Score=38.55 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.0
Q ss_pred HHHcCCcEEEEcCCCCCchhh
Q 009212 301 PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTla 321 (540)
.+..|..+++++|||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 356889999999999999963
No 273
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.52 E-value=24 Score=37.16 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=33.0
Q ss_pred ccccccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 266 SRKSFKELGCSDYMIESLKRQ---NFLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~---gf~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
+..+|+++|--+++.+.|.+. -+..|--++... +---+.+|+.+|+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHH
Confidence 446899998777777776552 111222222111 11237899999999999974
No 274
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.45 E-value=4.7 Score=42.88 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=33.8
Q ss_pred ccccccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH--HcCCcEEEEcCCCCCchhh
Q 009212 266 SRKSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPPV--VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ-~~aip~i--l~G~dvlv~ApTGSGKTla 321 (540)
+..+|++.|--+++.+.|++.=. .|+. -+.+..+ .--+.+|+.+|+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 45689999988888888765310 0111 1111111 1347899999999999974
No 275
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.35 E-value=4.2 Score=42.88 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=32.3
Q ss_pred ccccccccCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 266 SRKSFKELGCSDYMIESLKRQ-N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~-g--f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
+..+|+++|--++..+.|.+. - +..|--++... +.--+-+|+.+|+|+|||+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHH
Confidence 346899998777777777542 0 11111111110 11237899999999999975
No 276
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.31 E-value=19 Score=37.73 Aligned_cols=53 Identities=13% Similarity=0.365 Sum_probs=31.8
Q ss_pred ccccccccCCCHHHHHHHHHC-C--CCCCcHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 266 SRKSFKELGCSDYMIESLKRQ-N--FLRPSQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 266 ~~~~F~~l~L~~~ll~~L~~~-g--f~~ptpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
+..+|++.|--+++.+.|.+. - +..|--++... +.--+-+++.+|+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHH
Confidence 346899998777777776542 0 11111111110 11236799999999999975
No 277
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=46.27 E-value=87 Score=33.40 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.4
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
.+++++++|+|||...
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999753
No 278
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=45.91 E-value=32 Score=36.34 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHH
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNC 365 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l 365 (540)
.|.=+++.|++|+|||.. ++-++..+.. ..+..++|+.- -+-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~l-al~~a~~~a~----------~~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTF-VRQQALQWGT----------AMGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHH-HHHHHHHHTT----------TSCCCEEEEES-SSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHH-HHHHHHHHHH----------hcCCcEEEEec-cCCHHHHHHHH
Confidence 456788899999999964 3333333321 11335676653 23344555544
No 279
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=45.91 E-value=40 Score=36.93 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
..++||.+++++-|..+++.+++. ++++..++|.... .....+. ...+|||||. .+.. .+++. +++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~R~-~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~ 421 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGR 421 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTTHH-HHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChHHHH-HHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceE
Confidence 347999999999999999998876 3567778875332 2223332 4579999996 2333 45564 776
Q ss_pred E
Q 009212 424 A 424 (540)
Q Consensus 424 L 424 (540)
|
T Consensus 422 V 422 (618)
T 2whx_A 422 V 422 (618)
T ss_dssp E
T ss_pred E
Confidence 6
No 280
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=45.74 E-value=10 Score=37.54 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+.++++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467999999999999975
No 281
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=45.63 E-value=8 Score=38.94 Aligned_cols=19 Identities=42% Similarity=0.665 Sum_probs=17.0
Q ss_pred HHcCCcEEEEcCCCCCchh
Q 009212 302 VVEGKSCILADQSGSGKTL 320 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTl 320 (540)
+..|..+++++|||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4578999999999999996
No 282
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=45.44 E-value=11 Score=38.54 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=15.6
Q ss_pred cCCc--EEEEcCCCCCchhhc
Q 009212 304 EGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~d--vlv~ApTGSGKTlay 322 (540)
.|.+ ++..++||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 577899999999764
No 283
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=45.39 E-value=26 Score=36.45 Aligned_cols=67 Identities=13% Similarity=0.125 Sum_probs=46.7
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccEE
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRCA 424 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~L 424 (540)
.++||.+|++.-|.++++.+++. ++.+..++|.... .....+. ...+|||||- .+ ...+++.. ++|
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~V 255 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRV 255 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEE
Confidence 36999999999999999988765 3567777776553 3333443 3579999995 23 34566666 665
Q ss_pred E
Q 009212 425 I 425 (540)
Q Consensus 425 V 425 (540)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 284
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=44.95 E-value=8.1 Score=35.51 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|+-+.+++|+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999964
No 285
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=44.92 E-value=8.5 Score=39.72 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=19.1
Q ss_pred HHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 298 AFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 298 aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
.+..++.|.| ++..++||||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556778887 555689999999874
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=44.62 E-value=8.8 Score=35.01 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=16.5
Q ss_pred HcCCcEEEEcCCCCCchhhc
Q 009212 303 VEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlay 322 (540)
..++.+++++++|||||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 35788999999999999753
No 287
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=43.83 E-value=57 Score=36.18 Aligned_cols=74 Identities=19% Similarity=0.157 Sum_probs=54.4
Q ss_pred EEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchH---HHHHhhcC---CCcEEEeChHHHHHHHHhccccCCC
Q 009212 347 RVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQK---TQLENLQE---GVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 347 ~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~---~q~~~l~~---~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..+|+++++.-+.+++..+.+. ++.+..++|+.... .+...+.. ..+|||||-- + ...+++ .
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi-----~-e~GlDi-~ 389 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA-----I-GMGLNL-S 389 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG-----G-GSSCCC-C
T ss_pred CCEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH-----H-HCCcCc-C
Confidence 3577799999888888888764 46788999998876 45555553 3799999962 2 346677 8
Q ss_pred ccEEEEeCCccc
Q 009212 421 LRCAILDEVDIL 432 (540)
Q Consensus 421 i~~LVlDEad~l 432 (540)
+++||.-.+...
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 999998777543
No 288
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=43.81 E-value=2.8 Score=41.08 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=27.0
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHHHH--cCCcEEEEcCCCCCchhh
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQ-AMAFPPVV--EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ-~~aip~il--~G~dvlv~ApTGSGKTla 321 (540)
..+|.+++..+++.+.|.+.= ..|+. ..++..+. -.+.+++.+|+|+|||..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 357999988788777775520 11111 12222211 124599999999999964
No 289
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=42.87 E-value=34 Score=37.92 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
...++||.+++++-+.++++.+++. ++.+..++|+....+ ....+.+|||||- .+.++ +++. +++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e---r~~~~~~VLVATd-----VaerG-IDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV---IPTIGDVVVVATD-----ALMTG-YTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG---SCSSSCEEEEECT-----THHHH-CCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH---HHhCCCcEEEECC-----hHHcc-CCCC-CcE
Confidence 4568999999999999999888864 467889999987664 2345579999995 34443 3454 877
Q ss_pred EE
Q 009212 424 AI 425 (540)
Q Consensus 424 LV 425 (540)
+|
T Consensus 460 VI 461 (666)
T 3o8b_A 460 VI 461 (666)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 290
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=42.69 E-value=15 Score=40.26 Aligned_cols=76 Identities=24% Similarity=0.220 Sum_probs=48.8
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcC-CCCceEEEEeCC--------cchHHHHHhh---cC-CCcEEEeChHHHHHHH
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKC-GVPFRSMVVTGG--------FRQKTQLENL---QE-GVDVLIATPGRFMFLI 411 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~-~~~l~v~~l~Gg--------~~~~~q~~~l---~~-~~dIlVaTP~rL~~ll 411 (540)
+.++||.++++..+..+.+.+...... ..++.+..++|+ ....++...+ .+ ..+|||||-- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~-----~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV-----A 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS-----C
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc-----c
Confidence 568999999999999999999875221 125778888888 6655543333 33 4789999851 1
Q ss_pred HhccccCCCccEEEE
Q 009212 412 KEGILQLINLRCAIL 426 (540)
Q Consensus 412 ~~~~~~l~~i~~LVl 426 (540)
...+++..+++||.
T Consensus 475 -~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 -EEGLDIKECNIVIR 488 (699)
T ss_dssp -CTTSCCCSCCCCEE
T ss_pred -ccCCccccCCEEEE
Confidence 23566777777764
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=41.47 E-value=11 Score=33.64 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
++.+++++++|||||...
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999754
No 292
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=41.04 E-value=7.1 Score=34.82 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.7
Q ss_pred HcCCcEEEEcCCCCCchhhc
Q 009212 303 VEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTlay 322 (540)
..++.+++.+++|||||...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH
Confidence 35678999999999999753
No 293
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=40.63 E-value=8.4 Score=35.33 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=16.8
Q ss_pred HHcCCcEEEEcCCCCCchhh
Q 009212 302 VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTla 321 (540)
+..|+-+++++++|||||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44678899999999999964
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=40.48 E-value=12 Score=36.38 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.8
Q ss_pred HHcCCcEEEEcCCCCCchhh
Q 009212 302 VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTla 321 (540)
+..|.-+++++|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45677899999999999964
No 295
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=40.38 E-value=11 Score=33.32 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
++-+++++++|||||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 46689999999999965
No 296
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=40.03 E-value=25 Score=33.77 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=30.3
Q ss_pred cccccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCcEEEEcCCCCCchhh
Q 009212 267 RKSFKELGCSDYMIESLKRQNFLRPSQIQAMAFPPVV--EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 267 ~~~F~~l~L~~~ll~~L~~~gf~~ptpiQ~~aip~il--~G~dvlv~ApTGSGKTla 321 (540)
..+|+++...+.+...+...-.. . -....+..+. -.+.+++.+|+|+|||..
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 35788888787777666553110 0 0011222211 124599999999999964
No 297
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=40.02 E-value=19 Score=32.74 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=30.4
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
.-.++|+||.+.-+ |......+..++..+....|++++|-
T Consensus 86 ~~~~llLDEp~a~L-D~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHL-DDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTC-CHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCEEEECCCccCC-CHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 34689999999999 76667777777766666778887764
No 298
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=39.93 E-value=11 Score=34.75 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|+=+++++|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466788899999999964
No 299
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=39.73 E-value=44 Score=34.94 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=36.7
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEE--------eCCcchHHH---HHhhcC--CCcEEEeChHHHHHH
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV--------TGGFRQKTQ---LENLQE--GVDVLIATPGRFMFL 410 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l--------~Gg~~~~~q---~~~l~~--~~dIlVaTP~rL~~l 410 (540)
.+.++||.++++..+..+.+.+...... ..+++..+ +|+....++ ...+.. .++|||||- .
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGG-GSCCEEC------------------------------CCEEEEEC------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCc-ceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----c
Confidence 3568999999999999999999875221 12333333 334444333 233333 378999994 2
Q ss_pred HHhccccCCCccEEEEeC
Q 009212 411 IKEGILQLINLRCAILDE 428 (540)
Q Consensus 411 l~~~~~~l~~i~~LVlDE 428 (540)
+ ...+++..+++||.=+
T Consensus 463 ~-~~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 463 A-DEGIDIVQCNLVVLYE 479 (556)
T ss_dssp -----------CEEEEET
T ss_pred h-hcCCCchhCCEEEEeC
Confidence 2 3366788899888633
No 300
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=39.08 E-value=11 Score=38.49 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
++-+++++|||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346889999999999653
No 301
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=38.97 E-value=11 Score=38.05 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
+-++|.+|||+|||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34678999999999653
No 302
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=38.75 E-value=24 Score=45.51 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCCCCcHHH-HH---HHHHHHcCCcEEEEcCCCCCchhhcH
Q 009212 277 DYMIESLKRQNFLRPSQIQ-AM---AFPPVVEGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 277 ~~ll~~L~~~gf~~ptpiQ-~~---aip~il~G~dvlv~ApTGSGKTlayl 323 (540)
..+.+.+.+.|+. +++.+ .+ .+..+...+.+++++|||||||.++-
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 4456666777774 55554 22 22334556789999999999999864
No 303
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=38.70 E-value=11 Score=37.90 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.0
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
=+++++|||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678999999999653
No 304
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=38.45 E-value=13 Score=33.58 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.0
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
..|.-+++.+++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577889999999999964
No 305
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=38.13 E-value=14 Score=35.80 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
..+++.+|+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 37999999999999753
No 306
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=37.90 E-value=39 Score=34.17 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=55.2
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEE-EEeCCcchHHHHHhhcC-CCcEEEe----ChHHHHHHHHhccccCC
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSM-VVTGGFRQKTQLENLQE-GVDVLIA----TPGRFMFLIKEGILQLI 419 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~-~l~Gg~~~~~q~~~l~~-~~dIlVa----TP~rL~~ll~~~~~~l~ 419 (540)
.++||.|+++.-|..++..++.. ++.+. .++|. ... ...+.+ ..+|||| |-- + ...+++.
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~~-----~-~~GiDip 318 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYGK-----L-TRGVDLP 318 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTCC-----C-CCCCCCT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCch-----h-hccCccc
Confidence 56999999999999999988875 34555 44543 222 555554 4899999 541 1 3467888
Q ss_pred C-ccEEEEeCCcccCCCCCHHHHHHHHHH
Q 009212 420 N-LRCAILDEVDILFNDEDFEVALQSLIS 447 (540)
Q Consensus 420 ~-i~~LVlDEad~ll~d~~f~~~i~~Il~ 447 (540)
. ++++|.-.+.. .......++++=+
T Consensus 319 ~~v~~VI~~~~p~---~~~~~~y~qr~GR 344 (414)
T 3oiy_A 319 ERIKYVIFWGTPS---GPDVYTYIQASGR 344 (414)
T ss_dssp TTCCEEEEESCCT---TTCHHHHHHHHGG
T ss_pred cccCEEEEECCCC---CCCHHHHHHHhCc
Confidence 8 89988644321 0345555555543
No 307
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=37.68 E-value=21 Score=42.19 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=26.1
Q ss_pred EEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHH
Q 009212 309 ILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAE 356 (540)
Q Consensus 309 lv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~Ptre 356 (540)
+|.|..|||||.+.+--+...+... ....++|+|||...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~---------~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA---------PFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC---------TTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC---------CCCCcEEEEecCcc
Confidence 6889999999987544444444321 13457899988763
No 308
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=37.57 E-value=28 Score=36.44 Aligned_cols=68 Identities=7% Similarity=0.020 Sum_probs=44.3
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeChHHHHHHHHhccccCCCccE
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIATPGRFMFLIKEGILQLINLRC 423 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~ 423 (540)
+.++||.+|++.-|..+++.++.. ++.+..++|..... ....+. ...+|||||-- +. ..+++.. ++
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~~R~~-~~~~f~~g~~~iLVaT~v-----~~-~GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRKSYDT-EYPKCKNGDWDFVITTDI-----SE-MGANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTTCCCC-CGGGSSSCCCSEEEESSC-----C----CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHHHHHH-HHhhccCCCceEEEECCh-----HH-hCeecCC-CE
Confidence 346999999999999999998876 35777787753322 222333 34789999952 22 3455666 55
Q ss_pred EE
Q 009212 424 AI 425 (540)
Q Consensus 424 LV 425 (540)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 309
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=37.52 E-value=12 Score=32.28 Aligned_cols=15 Identities=27% Similarity=0.415 Sum_probs=12.8
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-+++++++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999974
No 310
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=37.19 E-value=13 Score=37.56 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
..++++.+|+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999653
No 311
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=37.01 E-value=17 Score=35.75 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
...++++.+|+|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 346799999999999975
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=37.01 E-value=14 Score=33.18 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+..++++++.|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999975
No 313
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.36 E-value=25 Score=46.00 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHH-HHHH---HHHHcCCcEEEEcCCCCCchhhcH
Q 009212 275 CSDYMIESLKRQNFLRPSQIQ-AMAF---PPVVEGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 275 L~~~ll~~L~~~gf~~ptpiQ-~~ai---p~il~G~dvlv~ApTGSGKTlayl 323 (540)
|...+.+.+.+.|+. |++.| .+++ ..+...+-+++++|||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345566677788884 55544 3333 233445679999999999999864
No 314
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=36.29 E-value=15 Score=32.24 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+..+++.++.|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56789999999999964
No 315
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=36.18 E-value=14 Score=34.34 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHcCCcEEEEcCCCCCchhh
Q 009212 302 VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTla 321 (540)
+..|+-+.+++|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45688899999999999964
No 316
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=36.10 E-value=25 Score=37.47 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.2
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEe
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVT 459 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~S 459 (540)
..++++|||||++| |..+...+..+++.+ .-|.|+.+
T Consensus 413 ~~~rlvvlDEA~km--D~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARL--DAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGS--CHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred CceeEEEEeccccC--CHHHHHHHHHHHHHc--CCEEEEEC
Confidence 58999999999777 567888888888876 57877643
No 317
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=36.02 E-value=12 Score=33.49 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=15.8
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
..|.-+++.+++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567789999999999964
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=35.51 E-value=13 Score=35.59 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=13.1
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
-+++++++|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3678999999999653
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=35.45 E-value=15 Score=32.55 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+.-+++.++.|||||..
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999964
No 320
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=35.20 E-value=30 Score=37.80 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=44.8
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeC--------CcchHHHHH---hhcC--CCcEEEeChHHHHHH
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTG--------GFRQKTQLE---NLQE--GVDVLIATPGRFMFL 410 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~G--------g~~~~~q~~---~l~~--~~dIlVaTP~rL~~l 410 (540)
.+.++||.++++.-+..+++.++..+.. ..+++..++| +....++.. .+.. ..+|||+|--
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~-~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v----- 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKL-SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV----- 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTC-CSCCEEC-----------------------------CCSCSEEEES-----
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc-cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech-----
Confidence 3567999999999999999999886532 2366666754 554444332 3333 4789999941
Q ss_pred HHhccccCCCccEEEEeCC
Q 009212 411 IKEGILQLINLRCAILDEV 429 (540)
Q Consensus 411 l~~~~~~l~~i~~LVlDEa 429 (540)
+ ...+++..+++||.=+.
T Consensus 471 ~-~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 A-DEGIDIAQCNLVILYEY 488 (696)
T ss_dssp S-CCC---CCCSEEEEESC
T ss_pred h-hcCCcCccCCEEEEeCC
Confidence 2 34677888998886444
No 321
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=35.13 E-value=14 Score=34.53 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.1
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
+.|+=+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677889999999999964
No 322
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=35.02 E-value=20 Score=38.43 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCCchhhcH
Q 009212 304 EGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayl 323 (540)
.+.+++|.+.||||||.+.-
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~ 185 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVN 185 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHH
Confidence 46899999999999997643
No 323
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=34.81 E-value=30 Score=34.69 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.+++++-+..+++.+... ++.+..++|+....++...+ . ...+|||+|.- + ...+++..
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~Gidip~ 348 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR-----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL-----L-ARGIDVQQ 348 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT-----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS-----C-C--CCGGG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc-----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc-----c-ccCCCccC
Confidence 347999999999999998888764 45677888887665543333 3 34789999952 2 23566778
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 349 v~~Vi~ 354 (414)
T 3eiq_A 349 VSLVIN 354 (414)
T ss_dssp CSCEEE
T ss_pred CCEEEE
Confidence 888775
No 324
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=34.61 E-value=15 Score=34.69 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
|+-+++.+|||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 56689999999999843
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=34.59 E-value=15 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999963
No 326
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=34.43 E-value=18 Score=32.63 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.=+.+.+|+|||||..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 567788899999999964
No 327
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=34.40 E-value=1.9e+02 Score=30.05 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
+-+++++++|+|||...
T Consensus 101 ~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999764
No 328
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=34.33 E-value=16 Score=34.39 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=16.1
Q ss_pred HHcCCcEEEEcCCCCCchhh
Q 009212 302 VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTla 321 (540)
+-.|+=+++++|+|+|||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 55788899999999999974
No 329
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=34.25 E-value=23 Score=39.53 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=20.2
Q ss_pred HHHHHHHcCCc--EEEEcCCCCCchhhc
Q 009212 297 MAFPPVVEGKS--CILADQSGSGKTLAY 322 (540)
Q Consensus 297 ~aip~il~G~d--vlv~ApTGSGKTlay 322 (540)
..+..++.|.| ++..++||||||...
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 36777889987 455689999999764
No 330
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=33.95 E-value=75 Score=33.95 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcC---CCCceEEEEeCCcch--HHHHHhhcCC-Cc---EEEeChHHHHHHHHhc
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKC---GVPFRSMVVTGGFRQ--KTQLENLQEG-VD---VLIATPGRFMFLIKEG 414 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~---~~~l~v~~l~Gg~~~--~~q~~~l~~~-~d---IlVaTP~rL~~ll~~~ 414 (540)
...++||.|++++-|..+++.+.+++.. ...-.+..++|.... ...+..+.++ .+ |+|+|- . + ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-~----l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-L----L-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-T----T-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-h----h-hc
Confidence 3578999999999999999999876421 112235667777653 2234444442 23 677763 1 1 34
Q ss_pred cccCCCccEEEEeCC
Q 009212 415 ILQLINLRCAILDEV 429 (540)
Q Consensus 415 ~~~l~~i~~LVlDEa 429 (540)
.+++..+++||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 678899999998655
No 331
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=33.29 E-value=17 Score=37.22 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.2
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
..|..+++++|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577899999999999964
No 332
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=33.24 E-value=66 Score=36.00 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=39.9
Q ss_pred CCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEE--------EEeCCcchHHH---HHhhcC--CCcEEEeChHHHHHH
Q 009212 344 GSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSM--------VVTGGFRQKTQ---LENLQE--GVDVLIATPGRFMFL 410 (540)
Q Consensus 344 ~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~--------~l~Gg~~~~~q---~~~l~~--~~dIlVaTP~rL~~l 410 (540)
.+.++||.++++..+..+.+.++..... ..+++. .++|+....++ +..+.. .++|||||- .
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~-~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTT-CSCCCEEC----------------------------CCSEEEEEC-----C
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCccc-ccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----c
Confidence 3568999999999999999999874221 122322 33444444433 233333 478999995 2
Q ss_pred HHhccccCCCccEEEEeCC
Q 009212 411 IKEGILQLINLRCAILDEV 429 (540)
Q Consensus 411 l~~~~~~l~~i~~LVlDEa 429 (540)
+ ...+++..+++||.=+.
T Consensus 704 ~-~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 704 A-DEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp --------CCCSEEEEESC
T ss_pred h-hcCCCchhCCEEEEeCC
Confidence 2 23667888999886333
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=33.12 E-value=18 Score=32.60 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
+=+.+.+|+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999964
No 334
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=32.99 E-value=17 Score=32.99 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.-+++.++.|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999964
No 335
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=32.89 E-value=9.2 Score=39.94 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.|+++.-+..++..+... ++.+..++|+....+....+ . ...+|||||- ++. ..+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~-~GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC-----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc-cCCcccc
Confidence 457999999999999888888765 35677788887655443332 2 2478999994 232 3567778
Q ss_pred ccEEE
Q 009212 421 LRCAI 425 (540)
Q Consensus 421 i~~LV 425 (540)
+++||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 88776
No 336
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=32.73 E-value=12 Score=39.70 Aligned_cols=50 Identities=34% Similarity=0.486 Sum_probs=30.1
Q ss_pred ccccccCCCHHHHHHHHHC--CCCCCcHHHHHHHHHH--HcCCcEEEEcCCCCCchhhc
Q 009212 268 KSFKELGCSDYMIESLKRQ--NFLRPSQIQAMAFPPV--VEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 268 ~~F~~l~L~~~ll~~L~~~--gf~~ptpiQ~~aip~i--l~G~dvlv~ApTGSGKTlay 322 (540)
.+|.++.-.++.++.|.+. .+..|. .+..+ .-.+.+++.+|+|+|||+..
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4788888777776666542 011111 11111 11257999999999999753
No 337
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=32.58 E-value=1.6e+02 Score=31.38 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=17.0
Q ss_pred CCC-CcEEEEeccCCHHHHHHHHHhCC
Q 009212 450 PVT-AQYLFVTATLPVEIYNKLVEVFP 475 (540)
Q Consensus 450 ~~~-~Q~ll~SATlp~~i~~~l~~~l~ 475 (540)
... +.+|++|||+.+ ...+.+.+.
T Consensus 312 ~~~~~svIltSaTL~~--~~~~~~~lG 336 (551)
T 3crv_A 312 NDNELSIILMSGTLPP--REYMEKVWG 336 (551)
T ss_dssp GCTTCEEEEEESSCCC--HHHHHHTSC
T ss_pred hccCceEEEEeeCCCc--HHHHHHHhC
Confidence 344 789999999986 355555554
No 338
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=32.23 E-value=15 Score=32.31 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
|.-++++++.|||||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 56788999999999975
No 339
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=32.02 E-value=17 Score=31.86 Aligned_cols=15 Identities=27% Similarity=0.249 Sum_probs=12.8
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-++++++.|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478899999999964
No 340
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=31.71 E-value=1.1e+02 Score=29.30 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=49.8
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHH---hhcC--CCc-EEEeChHHHHHHHHhccccC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLE---NLQE--GVD-VLIATPGRFMFLIKEGILQL 418 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~---~l~~--~~d-IlVaTP~rL~~ll~~~~~~l 418 (540)
+.++||.+.++..+..+...+.... ++.+..++|+.+..+... .+.. .+. +|++|- .. ...+++
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-~~-----g~Glnl 181 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-AG-----GFGINL 181 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-TT-----CCCCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-hh-----cCCcCc
Confidence 4579999999999998888887642 245667888887554433 3333 355 455553 21 346778
Q ss_pred CCccEEEEeCC
Q 009212 419 INLRCAILDEV 429 (540)
Q Consensus 419 ~~i~~LVlDEa 429 (540)
..++++|+=+.
T Consensus 182 ~~a~~VI~~d~ 192 (271)
T 1z5z_A 182 TSANRVIHFDR 192 (271)
T ss_dssp TTCSEEEECSC
T ss_pred ccCCEEEEECC
Confidence 88888887444
No 341
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=31.67 E-value=19 Score=32.96 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=16.1
Q ss_pred HHHcCCcEEEEcCCCCCchhh
Q 009212 301 PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTla 321 (540)
.+..|+=+.+.+|+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 467788899999999999964
No 342
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.43 E-value=18 Score=31.44 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=12.9
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-+++.++.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999965
No 343
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.33 E-value=16 Score=32.49 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCCchhhcH
Q 009212 304 EGKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayl 323 (540)
.|.=+.+++|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45567889999999997644
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=30.59 E-value=14 Score=32.73 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|..+++.++.|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999964
No 345
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=30.49 E-value=25 Score=32.56 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=28.4
Q ss_pred ccEEEEeCCcccCCCC--CH--HHHHHHHHHhCCCCCcEEEEeccCCHHHHHHHHHhC
Q 009212 421 LRCAILDEVDILFNDE--DF--EVALQSLISSSPVTAQYLFVTATLPVEIYNKLVEVF 474 (540)
Q Consensus 421 i~~LVlDEad~ll~d~--~f--~~~i~~Il~~l~~~~Q~ll~SATlp~~i~~~l~~~l 474 (540)
-.+|||||||.++... .. ...+..+..+-....++++++.. +..+...++..+
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~-~~~l~~~lr~ri 144 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG-PKLLDQNLRTLV 144 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC-GGGBCHHHHTTE
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC-HHHHhHHHHHHh
Confidence 4479999999995211 11 12222232233445688888776 444444444433
No 346
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=30.44 E-value=16 Score=22.47 Aligned_cols=17 Identities=47% Similarity=0.847 Sum_probs=7.5
Q ss_pred CCCCCCCCcCccccCCC
Q 009212 63 GGDGGGGGYSRTPLETA 79 (540)
Q Consensus 63 ~~~~~~~~~~~~~~~~~ 79 (540)
||+|+|+|--+-+--||
T Consensus 1 ggggggggaashqrvtp 17 (29)
T 1cn3_F 1 GGGGGGGGAASHQRVTP 17 (29)
T ss_dssp CCCCCCSTTTCCCCCEE
T ss_pred CCCCCCCccccccccCc
Confidence 34444555444333344
No 347
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=30.39 E-value=1.5e+02 Score=32.56 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=52.2
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcC-C------------------------------CCceEEEEeCCcchHHHHHhh
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKC-G------------------------------VPFRSMVVTGGFRQKTQLENL 393 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~-~------------------------------~~l~v~~l~Gg~~~~~q~~~l 393 (540)
+.++||.+|++.-+..++..+...... . ....+..++|+....++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 457999999999999999888764321 0 012478889998776654433
Q ss_pred c----CCCcEEEeChHHHHHHHHhccccCCCccEEEE
Q 009212 394 Q----EGVDVLIATPGRFMFLIKEGILQLINLRCAIL 426 (540)
Q Consensus 394 ~----~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVl 426 (540)
. ...+|||||.- + ...+++..+.+||.
T Consensus 332 ~~f~~g~~~vlvaT~~-----l-~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATPT-----L-AAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECGG-----G-GGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEEChH-----H-hcccCCCceEEEEe
Confidence 2 45799999952 2 34677888877553
No 348
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=30.04 E-value=28 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
..++++.+|+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999754
No 349
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=29.82 E-value=24 Score=32.71 Aligned_cols=16 Identities=44% Similarity=0.852 Sum_probs=13.4
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
-.++.++.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678999999999854
No 350
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=29.76 E-value=26 Score=33.68 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=17.8
Q ss_pred HHcCCcEEEEcCCCCCchhhc
Q 009212 302 VVEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlay 322 (540)
.+.|+.+++.+++|+|||...
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345899999999999999763
No 351
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=29.59 E-value=19 Score=36.23 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=13.6
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
-+++++|||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999653
No 352
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=29.50 E-value=60 Score=37.87 Aligned_cols=73 Identities=26% Similarity=0.279 Sum_probs=49.6
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhc-CCCcEEEeC---hHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQ-EGVDVLIAT---PGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~-~~~dIlVaT---P~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|+++.-|..+++.++.. +.+..++|+.. .....+. ...+||||| -+ .+ ...+++..
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~------~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~Td----v~-~rGIDip~ 341 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYYG----TL-VRGLDLPE 341 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSS--HHHHHHHHTSCSEEEEECC-----------CCSCCTT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc------cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCCC----ee-EeccccCC
Confidence 456999999999988888776653 57888888764 2333343 457999994 22 22 34778889
Q ss_pred c-cEEEEeCCc
Q 009212 421 L-RCAILDEVD 430 (540)
Q Consensus 421 i-~~LVlDEad 430 (540)
+ ++||.=.+.
T Consensus 342 VI~~VI~~~~P 352 (1054)
T 1gku_B 342 RIRFAVFVGCP 352 (1054)
T ss_dssp TCCEEEEESCC
T ss_pred cccEEEEeCCC
Confidence 4 988876655
No 353
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=29.07 E-value=20 Score=36.37 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.3
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
-++|++|||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5788999999999653
No 354
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=28.99 E-value=19 Score=39.37 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=13.9
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
++++.+|+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 355
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=28.61 E-value=21 Score=33.13 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=11.5
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|+=+.+.+|+|+|||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788899999999975
No 356
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=28.52 E-value=20 Score=37.43 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.2
Q ss_pred EEEEcCCCCCchhh
Q 009212 308 CILADQSGSGKTLA 321 (540)
Q Consensus 308 vlv~ApTGSGKTla 321 (540)
++|.+|||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 67889999999965
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=28.45 E-value=20 Score=31.70 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
=+++++++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999965
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=28.38 E-value=21 Score=31.19 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367889999999975
No 359
>2fhz_B Colicin-E5; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.243.1.2 PDB: 2a8k_A 3ao9_A 2dfx_E 2djh_A* 3vj7_A*
Probab=27.79 E-value=31 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.4
Q ss_pred ccCCCCceEeecCCCCcceEEeCCCCC
Q 009212 75 PLETAGACELIDNDTGEKVIVWGGTDD 101 (540)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (540)
-..-||.|++++..||+-|-++...|-
T Consensus 66 ~Y~~~g~YVVvndrtGeivQiS~k~d~ 92 (108)
T 2fhz_B 66 VYGSPGKYVVVNDRTGEVTQISDKTDP 92 (108)
T ss_dssp EEEETTEEEEEETTTCBEEEECCTTCT
T ss_pred EecCCCCEEEEeCCCccEEEeccCCCC
Confidence 344689999999999999999988776
No 360
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=27.68 E-value=61 Score=37.92 Aligned_cols=65 Identities=23% Similarity=0.251 Sum_probs=42.3
Q ss_pred ccccccccC-C-CHHHHHHHHHCCCC----CCcHHHHHHHHHHHc---CCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 266 SRKSFKELG-C-SDYMIESLKRQNFL----RPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 266 ~~~~F~~l~-L-~~~ll~~L~~~gf~----~ptpiQ~~aip~il~---G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
.++.|..++ + .+++++..+..... +...+=..|+..++. .+.+|+.+.+|+|||.+.- .+++++.
T Consensus 96 aVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK-~im~yLa 169 (1052)
T 4anj_A 96 AVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK-FVLRYLT 169 (1052)
T ss_dssp EECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred EECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH-HHHHHHH
Confidence 456788884 5 57777666543322 234555667766653 3579999999999999853 3445543
No 361
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=27.52 E-value=37 Score=36.85 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.2
Q ss_pred HHHcCCcEEEEcCCCCCchhh
Q 009212 301 PVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTla 321 (540)
.+..|+.+++.+|+|+|||..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 356789999999999999965
No 362
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.19 E-value=57 Score=29.72 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCCccEEEEeCCcccCC-CCCHHHHHHHHHHhCCCCCcEEEEeccCC
Q 009212 418 LINLRCAILDEVDILFN-DEDFEVALQSLISSSPVTAQYLFVTATLP 463 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~-d~~f~~~i~~Il~~l~~~~Q~ll~SATlp 463 (540)
+...++||+||+..|-. +..|...+..++... ..+|+-+.|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecC
Confidence 45678999999887731 456888888887742 23454466764
No 363
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=27.13 E-value=22 Score=32.34 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.-+.+.+++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467788899999999964
No 364
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.05 E-value=1.8e+02 Score=28.40 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
+-+++.+++|+|||...
T Consensus 99 ~vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEEECSSCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34677899999999653
No 365
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=26.95 E-value=16 Score=38.75 Aligned_cols=72 Identities=11% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHH---HHhhc-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQ---LENLQ-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q---~~~l~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
+.++||.|+++.-|..++..+.+. ++.+..++|+....++ .+.+. ...+|||+|- ++. ..+++..
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~-----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~-~GiDip~ 425 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD-----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA-RGIDVSQ 425 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT-----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTT
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh-cCCCccC
Confidence 457999999999999988888764 3466777777654322 22333 3578999996 333 4677888
Q ss_pred ccEEEEe
Q 009212 421 LRCAILD 427 (540)
Q Consensus 421 i~~LVlD 427 (540)
++++|.-
T Consensus 426 v~~VI~~ 432 (508)
T 3fho_A 426 VNLVVNY 432 (508)
T ss_dssp CCEEEC-
T ss_pred CCEEEEE
Confidence 9988853
No 366
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=26.77 E-value=26 Score=31.13 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.3
Q ss_pred HHcCCcEEEEcCCCCCchhh
Q 009212 302 VVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTla 321 (540)
+..+.-+++.++.|||||..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHH
T ss_pred CcCCCEEEEECCCCCCHHHH
Confidence 34567899999999999974
No 367
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=26.69 E-value=1.5e+02 Score=33.63 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=37.6
Q ss_pred CEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhhcC--CCcEEEeCh
Q 009212 346 PRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENLQE--GVDVLIATP 404 (540)
Q Consensus 346 p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l~~--~~dIlVaTP 404 (540)
..+||.|.|++-+..+...+... ++.+.+++|+....+....... ...|+|||-
T Consensus 433 ~pvLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 433 QPVLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp CCEEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred CcEEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 35999999999999998888764 4567788888654443222211 247888884
No 368
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=26.66 E-value=57 Score=29.42 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=12.1
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999963
No 369
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.37 E-value=19 Score=32.25 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.-+++++++|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34678999999999743
No 370
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=26.28 E-value=24 Score=31.93 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
+-++++++.|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999965
No 371
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=26.21 E-value=25 Score=34.39 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
.-++++|++|||||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588899999999964
No 372
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=26.13 E-value=23 Score=32.36 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.2
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.-+.+.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355677889999999963
No 373
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=25.88 E-value=31 Score=34.25 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999975
No 374
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=25.79 E-value=23 Score=31.36 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
+.-+++.+++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456888999999999753
No 375
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=25.59 E-value=1e+02 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEeccc
Q 009212 516 KKSALLQLIEKSPVSKTIVFCNKK 539 (540)
Q Consensus 516 K~~~L~~ll~~~~~~rtIIFcnSr 539 (540)
-...|.++++..+ +.++||++|.
T Consensus 436 ~~~~i~~l~~~~~-g~~lvlF~Sy 458 (620)
T 4a15_A 436 MATVIEDIILKVK-KNTIVYFPSY 458 (620)
T ss_dssp HHHHHHHHHHHHC-SCEEEEESCH
T ss_pred HHHHHHHHHHhCC-CCEEEEeCCH
Confidence 3445666666544 5699999974
No 376
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=25.58 E-value=2.5e+02 Score=29.54 Aligned_cols=123 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCC
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGG 383 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg 383 (540)
.|.-+++.+++|+|||.....-+-... ..+-+++++++..... |+...+..++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~------------~~G~~vi~~~~ee~~~-~l~~~~~~~g~~------------ 334 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC------------ANKERAILFAYEESRA-QLLRNAYSWGMD------------ 334 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH------------TTTCCEEEEESSSCHH-HHHHHHHTTSCC------------
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH------------hCCCCEEEEEEeCCHH-HHHHHHHHcCCC------------
Q ss_pred cchHHHHHhhcCCCcEEE-------eChHHHHHHHHhccccCCCccEEEEeCCcccCCCCC-----HHHHHHHHHHhCCC
Q 009212 384 FRQKTQLENLQEGVDVLI-------ATPGRFMFLIKEGILQLINLRCAILDEVDILFNDED-----FEVALQSLISSSPV 451 (540)
Q Consensus 384 ~~~~~q~~~l~~~~dIlV-------aTP~rL~~ll~~~~~~l~~i~~LVlDEad~ll~d~~-----f~~~i~~Il~~l~~ 451 (540)
...+...-.+-+ -+.+.....+.. .....+.++||+| -=.-+ |.. ....+..++..+..
T Consensus 335 ------~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a-~~l~~~p~llilD-p~~~L-d~~~~~~~~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 335 ------FEEMERQNLLKIVCAYPESAGLEDHLQIIKS-EINDFKPARIAID-SLSAL-ARGVSNNAFRQFVIGVTGYAKQ 405 (525)
T ss_dssp ------HHHHHHTTSEEECCCCGGGSCHHHHHHHHHH-HHHTTCCSEEEEE-CHHHH-TSSSCHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHhCCCEEEEEeccccCCHHHHHHHHHH-HHHhhCCCEEEEc-ChHHH-HhhCChHHHHHHHHHHHHHHHh
Q ss_pred CCcEEEEec
Q 009212 452 TAQYLFVTA 460 (540)
Q Consensus 452 ~~Q~ll~SA 460 (540)
.-.+++++.
T Consensus 406 ~g~tvilvs 414 (525)
T 1tf7_A 406 EEITGLFTN 414 (525)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
No 377
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=25.48 E-value=28 Score=31.86 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHcCCcEEEEcCCCCCchhh
Q 009212 292 SQIQAMAFPPVVEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 292 tpiQ~~aip~il~G~dvlv~ApTGSGKTla 321 (540)
++.+... ..+..|.-+++.++.|||||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 4455544 3345677889999999999964
No 378
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=25.32 E-value=29 Score=31.66 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCchhhc
Q 009212 304 EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlay 322 (540)
.|.-+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567888999999999643
No 379
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=25.29 E-value=28 Score=30.39 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
+++++.++.|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 58999999999999753
No 380
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.17 E-value=40 Score=37.66 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
..++++.+|+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999764
No 381
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=24.96 E-value=25 Score=35.70 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=13.4
Q ss_pred cEEEEcCCCCCchhhc
Q 009212 307 SCILADQSGSGKTLAY 322 (540)
Q Consensus 307 dvlv~ApTGSGKTlay 322 (540)
-+++++|||+|||-.+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999754
No 382
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=24.86 E-value=34 Score=32.88 Aligned_cols=23 Identities=30% Similarity=0.487 Sum_probs=18.4
Q ss_pred HHcCCcEEEEcCCCCCchhhcHH
Q 009212 302 VVEGKSCILADQSGSGKTLAYLL 324 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlayll 324 (540)
+..|.-+++.+++|+|||...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHH
Confidence 45778899999999999975443
No 383
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=24.79 E-value=25 Score=31.15 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+.-++++++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688899999999974
No 384
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=24.44 E-value=29 Score=32.89 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=26.8
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCC-CcEEEEe
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVT-AQYLFVT 459 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~-~Q~ll~S 459 (540)
+.+-++|++||--.-+ |......+..++..+... -.+++++
T Consensus 161 ~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~~~g~tvi~v 202 (235)
T 3tif_A 161 ANNPPIILADQPTWAL-DSKTGEKIMQLLKKLNEEDGKTVVVV 202 (235)
T ss_dssp TTCCSEEEEESTTTTS-CHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred HcCCCEEEEeCCcccC-CHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3456789999998888 666666777766665332 2344443
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=24.32 E-value=32 Score=30.86 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.-+++.++.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 467789999999999965
No 386
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=24.24 E-value=90 Score=30.67 Aligned_cols=56 Identities=9% Similarity=-0.091 Sum_probs=35.6
Q ss_pred hHHHHHHHHhccccCCCccEEEEeCCcc-cCCCCCHHHHHHHHHHhCCCCCcEEEEeccC
Q 009212 404 PGRFMFLIKEGILQLINLRCAILDEVDI-LFNDEDFEVALQSLISSSPVTAQYLFVTATL 462 (540)
Q Consensus 404 P~rL~~ll~~~~~~l~~i~~LVlDEad~-ll~d~~f~~~i~~Il~~l~~~~Q~ll~SATl 462 (540)
+..+.+.+.... .+..-+++||||+|. |- ......+..+++..+....+|+.+.++
T Consensus 61 ~~~l~~~~~~~p-lf~~~kvvii~~~~~kl~--~~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 61 WNAIFSLCQAMS-LFASRQTLLLLLPENGPN--AAINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp HHHHHHHHHHHH-HCCSCEEEEEECCSSCCC--TTHHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred HHHHHHHhcCcC-CccCCeEEEEECCCCCCC--hHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 344444443322 245678999999998 75 456666777777766566666665554
No 387
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=24.16 E-value=56 Score=38.08 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=36.8
Q ss_pred ccccccccCC-CHHHHHHHHHCCCCC--C--cHHHHHHHHHHHc---CCcEEEEcCCCCCchhhcH
Q 009212 266 SRKSFKELGC-SDYMIESLKRQNFLR--P--SQIQAMAFPPVVE---GKSCILADQSGSGKTLAYL 323 (540)
Q Consensus 266 ~~~~F~~l~L-~~~ll~~L~~~gf~~--p--tpiQ~~aip~il~---G~dvlv~ApTGSGKTlayl 323 (540)
.++.|..+++ .++++...+...... | ..+=..|+..++. .+.+||++.+|+|||.+.-
T Consensus 125 avNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 190 (1010)
T 1g8x_A 125 AVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (1010)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHH
T ss_pred EecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHH
Confidence 4566777776 455665554432222 2 3455566666553 3569999999999999843
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=24.15 E-value=42 Score=30.27 Aligned_cols=15 Identities=40% Similarity=0.381 Sum_probs=12.4
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-+++++++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 467889999999953
No 389
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=24.09 E-value=38 Score=32.76 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHhC--CCCcEEEEeccc
Q 009212 514 LNKKSALLQLIEKS--PVSKTIVFCNKK 539 (540)
Q Consensus 514 ~~K~~~L~~ll~~~--~~~rtIIFcnSr 539 (540)
..|+..|.+++... ...++||||+++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~ 122 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFV 122 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccH
Confidence 46888898888775 568999999875
No 390
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=24.00 E-value=30 Score=30.39 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
+.+++.++.|||||..
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999965
No 391
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=23.88 E-value=26 Score=35.46 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=0.0
Q ss_pred EEEEcCCCCCchhhc
Q 009212 308 CILADQSGSGKTLAY 322 (540)
Q Consensus 308 vlv~ApTGSGKTlay 322 (540)
.++.++||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 392
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=23.84 E-value=28 Score=44.80 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.0
Q ss_pred HHcCCcEEEEcCCCCCchhhc
Q 009212 302 VVEGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 302 il~G~dvlv~ApTGSGKTlay 322 (540)
+..++.+++++|||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456899999999999999753
No 393
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=23.75 E-value=32 Score=30.65 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+.-+++.++.|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999964
No 394
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=23.58 E-value=29 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCCchhhc
Q 009212 305 GKSCILADQSGSGKTLAY 322 (540)
Q Consensus 305 G~dvlv~ApTGSGKTlay 322 (540)
.+++++.+|+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999753
No 395
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=23.44 E-value=3.3e+02 Score=22.78 Aligned_cols=39 Identities=3% Similarity=0.091 Sum_probs=22.5
Q ss_pred cEEEEeCCcccCCCCCHHHHHHHHHHhC-CCCCcEEEEeccC
Q 009212 422 RCAILDEVDILFNDEDFEVALQSLISSS-PVTAQYLFVTATL 462 (540)
Q Consensus 422 ~~LVlDEad~ll~d~~f~~~i~~Il~~l-~~~~Q~ll~SATl 462 (540)
..|+|||+|.+- ......+..++... +...++|+.|..-
T Consensus 77 ~~l~lDei~~l~--~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 77 GVLYVGDIAQYS--RNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp SEEEEEECTTCC--HHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CeEEEeChHHCC--HHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 579999999986 33334444444432 3345566555443
No 396
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=23.27 E-value=34 Score=30.84 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=19.4
Q ss_pred CCccEEEEeCCcc--cCCCCCHHHHHHHHHHh
Q 009212 419 INLRCAILDEVDI--LFNDEDFEVALQSLISS 448 (540)
Q Consensus 419 ~~i~~LVlDEad~--ll~d~~f~~~i~~Il~~ 448 (540)
.+-+++|+||++- .+ |..+...+..++..
T Consensus 98 ~~p~llilDEigp~~~l-d~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELF-SKKFRDLVRQIMHD 128 (178)
T ss_dssp CTTCEEEECCCSTTGGG-CHHHHHHHHHHHTC
T ss_pred cCCCEEEEeCCCCcccC-CHHHHHHHHHHHhc
Confidence 4567999999653 34 45566666666654
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=23.23 E-value=28 Score=30.73 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.-+++.++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999964
No 398
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=23.13 E-value=25 Score=31.64 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+.-+++.++.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 456688999999999964
No 399
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.01 E-value=1.9e+02 Score=31.70 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcC---------------C-------------CCceEEEEeCCcchHHHHHhh---
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKC---------------G-------------VPFRSMVVTGGFRQKTQLENL--- 393 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~---------------~-------------~~l~v~~l~Gg~~~~~q~~~l--- 393 (540)
+.++||.+|++.-+..++..+.+.... . ....+..++|+....++....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 356999999999999988888764210 0 012378888988776654333
Q ss_pred c-CCCcEEEeChHHHHHHHHhccccCCCccEEEEeCC
Q 009212 394 Q-EGVDVLIATPGRFMFLIKEGILQLINLRCAILDEV 429 (540)
Q Consensus 394 ~-~~~dIlVaTP~rL~~ll~~~~~~l~~i~~LVlDEa 429 (540)
. ...+|||||.- + ...+++..+.+ |||..
T Consensus 317 ~~g~~~vlvaT~~-----l-~~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATPT-----L-SAGINTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECST-----T-GGGCCCCBSEE-EECCS
T ss_pred HCCCCeEEEECcH-----h-hccCCCCceEE-EEcCC
Confidence 2 34789999962 2 33567777765 55533
No 400
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=22.91 E-value=18 Score=36.04 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHhh---c-CCCcEEEeChHHHHHHHHhccccCCC
Q 009212 345 SPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVTGGFRQKTQLENL---Q-EGVDVLIATPGRFMFLIKEGILQLIN 420 (540)
Q Consensus 345 ~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~Gg~~~~~q~~~l---~-~~~dIlVaTP~rL~~ll~~~~~~l~~ 420 (540)
..++||.+++++-+..+++.++.. ++.+..++|+....+....+ . ...+|||+|. .+. ..+++..
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gldi~~ 327 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhh-cCCCccc
Confidence 357999999999998888877654 35677777776554433222 2 2468999985 222 3556677
Q ss_pred ccEEEE
Q 009212 421 LRCAIL 426 (540)
Q Consensus 421 i~~LVl 426 (540)
++++|.
T Consensus 328 ~~~Vi~ 333 (394)
T 1fuu_A 328 VSLVIN 333 (394)
T ss_dssp ------
T ss_pred CCEEEE
Confidence 777764
No 401
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=22.89 E-value=28 Score=30.66 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-+++.++.|||||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
No 402
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=22.88 E-value=3.7e+02 Score=24.77 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=48.9
Q ss_pred HcCCcEEEEcCCCC--CchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEE
Q 009212 303 VEGKSCILADQSGS--GKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVV 380 (540)
Q Consensus 303 l~G~dvlv~ApTGS--GKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l 380 (540)
+.++-++|.+.+|+ |+.+| ..+... +.+++++.-..+-..+..+.+.... .-++..+
T Consensus 20 l~~k~vlITGasg~GIG~~~a------~~l~~~-----------G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~ 78 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTA------RRALLE-----------GADVVISDYHERRLGETRDQLADLG----LGRVEAV 78 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHH------HHHHHT-----------TCEEEEEESCHHHHHHHHHHHHTTC----SSCEEEE
T ss_pred CCCCEEEEECCCCCchHHHHH------HHHHHC-----------CCEEEEecCCHHHHHHHHHHHHhcC----CCceEEE
Confidence 56788999887654 54433 333322 4567888777777666666665442 2245556
Q ss_pred eCCcchHHHHHhhc-------CCCcEEEeChH
Q 009212 381 TGGFRQKTQLENLQ-------EGVDVLIATPG 405 (540)
Q Consensus 381 ~Gg~~~~~q~~~l~-------~~~dIlVaTP~ 405 (540)
..+....+....+. ...|++|...+
T Consensus 79 ~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag 110 (266)
T 3o38_A 79 VCDVTSTEAVDALITQTVEKAGRLDVLVNNAG 110 (266)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 66665544433332 35788888766
No 403
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=22.67 E-value=36 Score=30.03 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.-+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999753
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=22.57 E-value=72 Score=31.44 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=22.4
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
..+++|++..|.+- .. ..+..+++.++....+++.|-
T Consensus 151 ~ad~ill~k~dl~d--e~--~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVAG--EA--EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTCS--CT--HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccCC--HH--HHHHHHHHHhCCCCeEEEecc
Confidence 46788889998774 33 455555555554555555443
No 405
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=22.47 E-value=29 Score=31.49 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=14.0
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.|.-+.+.+++|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 344577889999999964
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=22.38 E-value=34 Score=31.41 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+..+++.++.|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 56789999999999964
No 407
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=22.27 E-value=34 Score=22.20 Aligned_cols=10 Identities=70% Similarity=1.484 Sum_probs=5.9
Q ss_pred cCCCCCCCCc
Q 009212 62 SGGDGGGGGY 71 (540)
Q Consensus 62 ~~~~~~~~~~ 71 (540)
+||+|+|+|.
T Consensus 12 eggggggggs 21 (37)
T 2i9o_A 12 EGGGGGGGGS 21 (37)
T ss_dssp CCSCCCCSCS
T ss_pred ecCCCCCcch
Confidence 5666666654
No 408
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=22.14 E-value=36 Score=29.53 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCCchhh
Q 009212 306 KSCILADQSGSGKTLA 321 (540)
Q Consensus 306 ~dvlv~ApTGSGKTla 321 (540)
+-+++.++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4588999999999975
No 409
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=21.98 E-value=33 Score=31.19 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=12.9
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999965
No 410
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=21.95 E-value=35 Score=31.55 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+.-+++.+++|||||..
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 346789999999999975
No 411
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.90 E-value=72 Score=30.40 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=16.2
Q ss_pred cCC-cEEEEcCCCCCchhhcHH
Q 009212 304 EGK-SCILADQSGSGKTLAYLL 324 (540)
Q Consensus 304 ~G~-dvlv~ApTGSGKTlayll 324 (540)
.|+ ++++.++.|.|||...+-
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHH
Confidence 344 688899999999987543
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.81 E-value=33 Score=30.18 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.0
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-+++.++.|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 413
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=21.79 E-value=35 Score=31.32 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+..+++.++.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999965
No 414
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=21.75 E-value=83 Score=35.55 Aligned_cols=64 Identities=25% Similarity=0.299 Sum_probs=39.9
Q ss_pred cccccccc-CC-CHHHHHHHHHCCCC--CC--cHHHHHHHHHHHc---CCcEEEEcCCCCCchhhcHHHHHHHH
Q 009212 266 SRKSFKEL-GC-SDYMIESLKRQNFL--RP--SQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLPVIQRL 330 (540)
Q Consensus 266 ~~~~F~~l-~L-~~~ll~~L~~~gf~--~p--tpiQ~~aip~il~---G~dvlv~ApTGSGKTlayllpil~~l 330 (540)
.++.|..+ ++ .+++++..+..... .| ..+=..|+..++. .+.+|+.+.+|+|||.+.- -+++++
T Consensus 92 aVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK-~i~~yl 164 (784)
T 2v26_A 92 AVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK-FVLRYL 164 (784)
T ss_dssp EECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred EecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHH-HHHHHH
Confidence 45678887 45 46666655443222 22 4555667766653 4579999999999998843 333444
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.52 E-value=33 Score=31.96 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+..+++.++.|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 446899999999999964
No 416
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.51 E-value=32 Score=30.57 Aligned_cols=19 Identities=37% Similarity=0.408 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCCchhhc
Q 009212 304 EGKSCILADQSGSGKTLAY 322 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlay 322 (540)
.|.-+++.++.|||||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567889999999999753
No 417
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=21.49 E-value=1e+02 Score=35.33 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=41.8
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEE--------EeCCcchHHHH---HhhcC--CCcEEEeChHHHHH
Q 009212 343 SGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMV--------VTGGFRQKTQL---ENLQE--GVDVLIATPGRFMF 409 (540)
Q Consensus 343 ~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~--------l~Gg~~~~~q~---~~l~~--~~dIlVaTP~rL~~ 409 (540)
..+.++||.++++..+..+.+.+...... ..+++.. ++|+....++. ..+.. .++|||+|-
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l-~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~----- 702 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPIL-NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS----- 702 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTT-SSCCCEEC----------------------------CCSEEEEEC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccc-cccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----
Confidence 34678999999999999999999875321 1233333 34445444333 33333 478999994
Q ss_pred HHHhccccCCCccEEEEeCC
Q 009212 410 LIKEGILQLINLRCAILDEV 429 (540)
Q Consensus 410 ll~~~~~~l~~i~~LVlDEa 429 (540)
++ ...+++..+++||.=+.
T Consensus 703 ~~-~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 703 VA-DEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp C-------CCCCSEEEEESC
T ss_pred ch-hcCCcchhCCEEEEeCC
Confidence 22 23567788888876433
No 418
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.45 E-value=4.2e+02 Score=23.38 Aligned_cols=137 Identities=10% Similarity=0.001 Sum_probs=52.2
Q ss_pred HHHcCCcEEEEcCCCCCchhhcHHHHHHHHHHHHh-hccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCc-eEE
Q 009212 301 PVVEGKSCILADQSGSGKTLAYLLPVIQRLRQEEL-QGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPF-RSM 378 (540)
Q Consensus 301 ~il~G~dvlv~ApTGSGKTlayllpil~~l~~~~~-~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l-~v~ 378 (540)
.-+.|-.+-+....|-|=|+.+.+|+...-..... .........+.++||+-........+...+...+ + .+.
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g-----~~~v~ 90 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG-----VSEVE 90 (206)
T ss_dssp ---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT-----CSEEE
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeee
Confidence 34556677888889999999999997543221110 0011122345577777777766666655555442 1 222
Q ss_pred EEeCCcchHHHHHhhcCCCcEEEeChHHHHHHHHhc--------cccCCCccEEEEeCCcccCCCCCHHHHHHHHHHh--
Q 009212 379 VVTGGFRQKTQLENLQEGVDVLIATPGRFMFLIKEG--------ILQLINLRCAILDEVDILFNDEDFEVALQSLISS-- 448 (540)
Q Consensus 379 ~l~Gg~~~~~q~~~l~~~~dIlVaTP~rL~~ll~~~--------~~~l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~-- 448 (540)
. +.+....+.++... ...-...++||+|=. |- ++.-...++.|.+.
T Consensus 91 ~---------------------a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp-~~~G~el~~~lr~~~~ 146 (206)
T 3mm4_A 91 Q---------------------CDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MP-EMDGYEATREIRKVEK 146 (206)
T ss_dssp E---------------------ESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CS-SSCHHHHHHHHHHHHH
T ss_pred e---------------------eCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CC-CCCHHHHHHHHHhhhh
Confidence 2 22333444444432 112235678888842 33 45555566666553
Q ss_pred -CCCCCcEEEEeccC-CHHH
Q 009212 449 -SPVTAQYLFVTATL-PVEI 466 (540)
Q Consensus 449 -l~~~~Q~ll~SATl-p~~i 466 (540)
......+|++|+.. ..+.
T Consensus 147 ~~~~~~piI~ls~~~~~~~~ 166 (206)
T 3mm4_A 147 SYGVRTPIIAVSGHDPGSEE 166 (206)
T ss_dssp TTTCCCCEEEEESSCCCHHH
T ss_pred hcCCCCcEEEEECCCCcHHH
Confidence 24567899999976 4333
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.39 E-value=36 Score=32.24 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=19.3
Q ss_pred CccEEEEeCCcccCCCCCHHHHHHHHH
Q 009212 420 NLRCAILDEVDILFNDEDFEVALQSLI 446 (540)
Q Consensus 420 ~i~~LVlDEad~ll~d~~f~~~i~~Il 446 (540)
+-++|++||.-.-+ |......+..++
T Consensus 145 ~p~lllLDEPts~L-D~~~~~~i~~~l 170 (237)
T 2cbz_A 145 NADIYLFDDPLSAV-DAHVGKHIFENV 170 (237)
T ss_dssp CCSEEEEESTTTTS-CHHHHHHHHHHT
T ss_pred CCCEEEEeCccccc-CHHHHHHHHHHH
Confidence 45789999998888 666666666655
No 420
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=21.29 E-value=65 Score=31.25 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=31.4
Q ss_pred cCCcEEEEcCCCCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhh
Q 009212 304 EGKSCILADQSGSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLS 369 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~ 369 (540)
.|..+++.+.+|+||| .+.+-++..-.. .+-+++|+.- .|-..++...++.++
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~-----------~Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK-----------SDNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH-----------TTCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH-----------CCCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 3467888878888887 444443333222 2445777664 455566777777664
No 421
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=21.12 E-value=2.8e+02 Score=26.37 Aligned_cols=81 Identities=21% Similarity=0.387 Sum_probs=52.1
Q ss_pred HcCCcEEEEcCC-CCCchhhcHHHHHHHHHHHHhhccCCCCCCCCEEEEEccCHHHHHHHHHHHHhhhcCCCCceEEEEe
Q 009212 303 VEGKSCILADQS-GSGKTLAYLLPVIQRLRQEELQGLSKSTSGSPRVVILAPTAELASQVLSNCRSLSKCGVPFRSMVVT 381 (540)
Q Consensus 303 l~G~dvlv~ApT-GSGKTlayllpil~~l~~~~~~~~~~~~~~~p~aLIL~PtreLa~Qi~~~l~~l~~~~~~l~v~~l~ 381 (540)
|+||-+||.+.+ |-|+-.| ..+.. .+.+++++.-..+-+.++.+.++..+. ++..+.
T Consensus 5 L~gKvalVTGas~GIG~aiA------~~la~-----------~Ga~Vv~~~~~~~~~~~~~~~i~~~g~-----~~~~~~ 62 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIA------KKFAL-----------NDSIVVAVELLEDRLNQIVQELRGMGK-----EVLGVK 62 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHH------HHHHH-----------TTCEEEEEESCHHHHHHHHHHHHHTTC-----CEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHH------HHHHH-----------cCCEEEEEECCHHHHHHHHHHHHhcCC-----cEEEEE
Confidence 678888887543 4555433 23332 255788888888888888888876642 455666
Q ss_pred CCcchHHHHHhh-------cCCCcEEEeChH
Q 009212 382 GGFRQKTQLENL-------QEGVDVLIATPG 405 (540)
Q Consensus 382 Gg~~~~~q~~~l-------~~~~dIlVaTP~ 405 (540)
.+....++.+.+ ..+.||||...+
T Consensus 63 ~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 63 ADVSKKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 666655554444 246899998765
No 422
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=20.88 E-value=34 Score=30.78 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.8
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
.+.+.++.|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999964
No 423
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=20.84 E-value=39 Score=30.87 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCCchhhc
Q 009212 306 KSCILADQSGSGKTLAY 322 (540)
Q Consensus 306 ~dvlv~ApTGSGKTlay 322 (540)
.-+.+.+++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999653
No 424
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=20.72 E-value=37 Score=30.95 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
.+++.++.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999965
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=20.68 E-value=36 Score=29.89 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=10.7
Q ss_pred cCCcEEEEcCCCCCchhh
Q 009212 304 EGKSCILADQSGSGKTLA 321 (540)
Q Consensus 304 ~G~dvlv~ApTGSGKTla 321 (540)
.+.-+++.++.|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356788999999999975
No 426
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=20.67 E-value=36 Score=31.29 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
-.++.+++|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 467789999999975
No 427
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=20.45 E-value=42 Score=30.19 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCCchhh
Q 009212 305 GKSCILADQSGSGKTLA 321 (540)
Q Consensus 305 G~dvlv~ApTGSGKTla 321 (540)
+.-+++.++.|||||..
T Consensus 20 ~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999974
No 428
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=20.27 E-value=35 Score=30.36 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.7
Q ss_pred cEEEEcCCCCCchhh
Q 009212 307 SCILADQSGSGKTLA 321 (540)
Q Consensus 307 dvlv~ApTGSGKTla 321 (540)
.+++.++.|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999964
No 429
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=20.26 E-value=58 Score=37.86 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=39.4
Q ss_pred ccccccccCCC-HHHHHHHHHCCCC----CCcHHHHHHHHHHHc---CCcEEEEcCCCCCchhhcHHHHHHHHH
Q 009212 266 SRKSFKELGCS-DYMIESLKRQNFL----RPSQIQAMAFPPVVE---GKSCILADQSGSGKTLAYLLPVIQRLR 331 (540)
Q Consensus 266 ~~~~F~~l~L~-~~ll~~L~~~gf~----~ptpiQ~~aip~il~---G~dvlv~ApTGSGKTlayllpil~~l~ 331 (540)
.++.|..+++- ++++...+..... +...+=..|+..++. .+.+||++.+|+|||.+.- -+++++.
T Consensus 99 avNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K-~i~~yla 171 (995)
T 2ycu_A 99 VINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTK-KVIQYLA 171 (995)
T ss_dssp EECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHH-HHHHHHH
T ss_pred eeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHH-HHHHHHH
Confidence 45677777764 5555554433221 223455666766653 3579999999999999843 3344443
No 430
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=20.24 E-value=39 Score=31.76 Aligned_cols=41 Identities=10% Similarity=-0.028 Sum_probs=25.8
Q ss_pred CCccEEEEeCCcccCCCCCHHHHHHHH-HHhCCCCCcEEEEecc
Q 009212 419 INLRCAILDEVDILFNDEDFEVALQSL-ISSSPVTAQYLFVTAT 461 (540)
Q Consensus 419 ~~i~~LVlDEad~ll~d~~f~~~i~~I-l~~l~~~~Q~ll~SAT 461 (540)
.+-+++++||--.-+ |......+..+ +..+... .+++++..
T Consensus 147 ~~p~lllLDEPts~L-D~~~~~~i~~~l~~~~~~~-~tvi~vtH 188 (229)
T 2pze_A 147 KDADLYLLDSPFGYL-DVLTEKEIFESCVCKLMAN-KTRILVTS 188 (229)
T ss_dssp SCCSEEEEESTTTTS-CHHHHHHHHHHCCCCCTTT-SEEEEECC
T ss_pred cCCCEEEEECcccCC-CHHHHHHHHHHHHHHhhCC-CEEEEEcC
Confidence 456789999998888 66666666554 3333333 45555543
No 431
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=20.22 E-value=38 Score=30.65 Aligned_cols=19 Identities=21% Similarity=0.087 Sum_probs=15.0
Q ss_pred HcCCcEEEEcCCCCCchhh
Q 009212 303 VEGKSCILADQSGSGKTLA 321 (540)
Q Consensus 303 l~G~dvlv~ApTGSGKTla 321 (540)
..+.-+.+.+++|||||..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCEEEEEEESTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3455678899999999964
No 432
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=20.08 E-value=38 Score=31.71 Aligned_cols=42 Identities=7% Similarity=-0.073 Sum_probs=26.9
Q ss_pred CCCccEEEEeCCcccCCCCCHHHHHHHHHHhCCCCCcEEEEec
Q 009212 418 LINLRCAILDEVDILFNDEDFEVALQSLISSSPVTAQYLFVTA 460 (540)
Q Consensus 418 l~~i~~LVlDEad~ll~d~~f~~~i~~Il~~l~~~~Q~ll~SA 460 (540)
+.+-++|++||--.-+ |......+..++..+.....+++++.
T Consensus 156 ~~~p~lllLDEPt~~L-D~~~~~~~~~~l~~l~~~g~tvi~vt 197 (224)
T 2pcj_A 156 ANEPILLFADEPTGNL-DSANTKRVMDIFLKINEGGTSIVMVT 197 (224)
T ss_dssp TTCCSEEEEESTTTTC-CHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 4456789999998888 66666666666655532233455443
Done!