Query 009213
Match_columns 540
No_of_seqs 374 out of 2112
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 21:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 7.3E-53 2.5E-57 440.0 27.4 321 84-433 4-338 (349)
2 2zyl_A Possible oxidoreductase 100.0 3E-44 1E-48 379.7 28.6 311 80-432 17-339 (386)
3 1z01_A 2-OXO-1,2-dihydroquinol 100.0 5.4E-44 1.8E-48 384.5 28.9 339 72-443 25-418 (446)
4 2de6_A Terminal oxygenase comp 100.0 1.3E-43 4.5E-48 375.6 24.0 316 78-433 18-376 (392)
5 3n0q_A Putative aromatic-ring 100.0 1.8E-43 6E-48 375.5 23.8 324 73-433 26-400 (409)
6 3vca_A Ring-hydroxylating diox 100.0 4.9E-43 1.7E-47 372.4 24.4 324 73-433 28-403 (412)
7 3gkq_A Terminal oxygenase comp 100.0 4.3E-40 1.5E-44 343.4 23.3 316 78-432 21-376 (389)
8 3gcf_A Terminal oxygenase comp 100.0 8.7E-40 3E-44 342.0 25.3 316 77-432 23-379 (394)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 3.9E-36 1.3E-40 324.1 19.9 188 73-262 22-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 2.9E-36 9.9E-41 324.5 16.1 188 73-262 21-216 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 1.3E-34 4.6E-39 313.3 24.1 188 73-262 30-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 7.1E-35 2.4E-39 313.1 7.5 188 73-262 42-244 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 1.6E-33 5.5E-38 304.0 14.4 186 73-261 40-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 8E-26 2.7E-30 195.0 13.1 101 87-202 2-103 (103)
15 2i7f_A Ferredoxin component of 99.9 6.2E-26 2.1E-30 197.5 10.8 102 88-204 3-106 (108)
16 2de6_D Ferredoxin component of 99.9 7.4E-26 2.5E-30 199.4 11.1 104 87-205 3-108 (115)
17 1fqt_A Rieske-type ferredoxin 99.9 1.8E-25 6.2E-30 195.9 13.3 103 87-204 4-108 (112)
18 1vm9_A Toluene-4-monooxygenase 99.9 1.6E-25 5.6E-30 195.7 12.3 102 88-204 1-104 (111)
19 2jo6_A Nitrite reductase [NAD( 99.9 2E-25 6.8E-30 195.8 12.7 102 87-202 5-112 (113)
20 3dqy_A Toluene 1,2-dioxygenase 99.9 8.8E-26 3E-30 195.8 10.0 101 88-203 1-102 (106)
21 2jza_A Nitrite reductase [NAD( 99.9 5.6E-25 1.9E-29 198.0 13.1 106 87-205 2-112 (130)
22 3gce_A Ferredoxin component of 99.9 5.7E-25 1.9E-29 195.5 12.9 103 87-204 9-114 (121)
23 4aiv_A Probable nitrite reduct 99.9 1.7E-25 6E-30 198.2 8.9 102 87-202 8-116 (119)
24 3c0d_A Putative nitrite reduct 99.9 4.3E-25 1.5E-29 195.7 11.3 104 87-204 4-112 (119)
25 3d89_A Rieske domain-containin 99.9 1.7E-25 5.6E-30 207.8 7.3 118 85-205 13-137 (157)
26 1rie_A Rieske iron-sulfur prot 99.8 6.2E-20 2.1E-24 164.8 11.0 97 88-199 5-128 (129)
27 1rfs_A Rieske protein; iron-su 99.8 1.8E-20 6E-25 170.4 6.7 102 87-203 20-125 (139)
28 1g8k_B Arsenite oxidase; molyb 99.8 3.3E-19 1.1E-23 160.9 10.6 98 88-200 7-119 (133)
29 3azc_A Cytochrome B6-F complex 99.6 1.9E-20 6.4E-25 168.6 0.0 97 94-205 22-122 (133)
30 4aay_B AROB; oxidoreductase, r 99.7 1.7E-18 5.8E-23 163.0 8.6 97 89-200 51-161 (175)
31 1pp9_E Ubiquinol-cytochrome C 99.7 1.2E-16 4.2E-21 152.9 10.1 95 92-199 75-195 (196)
32 2nwf_A Ubiquinol-cytochrome C 99.7 1.6E-16 5.3E-21 144.6 10.2 93 94-199 7-140 (141)
33 2qjy_C Ubiquinol-cytochrome C 99.7 2.3E-16 8E-21 150.1 11.3 97 89-199 49-186 (187)
34 1nyk_A Rieske iron-sulfur prot 99.7 1.3E-16 4.4E-21 148.9 8.9 67 124-203 80-148 (165)
35 3cx5_E Cytochrome B-C1 complex 99.7 2.8E-16 9.7E-21 149.2 11.2 97 88-199 62-184 (185)
36 1vf5_D Rieske iron-sulfur prot 99.6 9.1E-17 3.1E-21 152.0 1.3 93 95-202 70-165 (179)
37 1jm1_A Rieske iron-sulfur prot 99.5 4E-15 1.4E-19 143.3 3.7 87 104-203 56-168 (204)
38 3hug_B Probable conserved memb 55.5 5 0.00017 34.0 1.9 48 421-483 26-73 (108)
39 3fz4_A Putative arsenate reduc 46.4 8.6 0.00029 32.8 2.0 18 460-477 9-26 (120)
40 3f0i_A Arsenate reductase; str 44.3 9.9 0.00034 32.4 2.1 17 460-476 10-26 (119)
41 3gkx_A Putative ARSC family re 42.4 11 0.00037 32.2 2.0 17 460-476 10-26 (120)
42 3rdw_A Putative arsenate reduc 39.7 12 0.00041 32.0 1.9 17 460-476 11-27 (121)
43 3l78_A Regulatory protein SPX; 36.1 16 0.00053 31.1 2.0 17 460-476 6-22 (120)
44 1s3c_A Arsenate reductase; ARS 35.8 16 0.00054 32.1 2.1 17 460-476 8-24 (141)
45 1rw1_A Conserved hypothetical 35.6 16 0.00055 30.6 2.0 17 460-476 6-22 (114)
46 2q1z_B Anti-sigma factor CHRR, 35.4 21 0.00071 33.1 2.9 25 454-478 25-49 (195)
47 2kok_A Arsenate reductase; bru 33.4 18 0.00063 30.5 2.0 18 460-477 11-28 (120)
48 1z3e_A Regulatory protein SPX; 23.3 35 0.0012 29.3 2.0 18 460-477 7-24 (132)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=7.3e-53 Score=440.04 Aligned_cols=321 Identities=20% Similarity=0.311 Sum_probs=244.2
Q ss_pred cccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEeCCCC
Q 009213 84 DWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGD 163 (540)
Q Consensus 84 ~~~~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd~~G~ 163 (540)
.+++.||+||+++|| +|+++.++++|++|||||+.+ |+++|++|+|||||++|+.|++++ +.|+||||||+||.+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~CpHrg~~L~~G~~~~-~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPD-GVVAALLDICPHRFAPLSDGILVN-GHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCGGGCEEET-TEEECTTTCCEECTTCC
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCC-CcEEEEeCcCCCCCcCCccCCccc-eEEEECCCCCEEcCCCC
Confidence 467999999999999 899999999999999999876 899999999999999999999974 79999999999999999
Q ss_pred cccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCccccccccCCCCCCCCCCCCCCceeeeeeEEeeChHHH
Q 009213 164 CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTKLFGNRDIPYGYEVL 243 (540)
Q Consensus 164 c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (540)
|+.+|+... ..+.+.+|++|||++++|+||||+++++.. +. ..+|.++++++++|.......+++|||+.+
T Consensus 81 ~~~~P~~~~-----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~-~~---~~~p~~~~~~~~~~~~~~~~~~~~~nwk~~ 151 (349)
T 3gke_A 81 CVHNPHGNG-----ARPASLNVRSFPVVERDALIWIWPGDPALA-DP---GAIPDFGCRVDPAYRTVGGYGHVDCNYKLL 151 (349)
T ss_dssp EEECCSTTC-----CCCGGGCCCBCCEEEETTEEEECCSCGGGC-CG---GGSCCCGGGGCTTSEEEEEEEEESSCHHHH
T ss_pred ccccCcccc-----ccccccccceeeEEEECCEEEEeeCCCCCC-cc---cccCCccccCCCCCEEEeEEEEEecCHHhH
Confidence 999996221 124578899999999999999999864321 11 235666667777776555667899999999
Q ss_pred hhhCCCCCCcccccccccccCC---CceeeecCCCe-eEEEEEeecCCCCc--------cccc-ccceeEEecceEEEEe
Q 009213 244 LENLMDPAHVPYAHYGLMRTRK---PKVKLDREGGR-PVEMSVNKIDINGF--------IGKQ-EWGSSKFLAPCIFFAY 310 (540)
Q Consensus 244 iEN~lD~~H~~~vH~~~~~~~~---p~~~~~r~~~~-~~~~~~~~~~~~Gf--------~~~~-~~~~~~f~~P~~~~~~ 310 (540)
+||++|+||++|+|+++++... ...+++.++.. .....+......+| .+.. .+..++|.+||++..+
T Consensus 152 ~EN~~D~~H~~~~H~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~ 231 (349)
T 3gke_A 152 VDNLMDLGHAQYVHRANAQTDAFDRLEREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNF 231 (349)
T ss_dssp HHHHHCGGGHHHHTHHHHCCTTGGGCEEEEEECSSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEE
T ss_pred HHhccccccchhccchhhcCccccCCCCEEEEcCCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEE
Confidence 9999999999999999998644 23344443322 22222332222111 1111 3567899999987654
Q ss_pred eecccccccCCccccccchhcccccceEEEEEEEEECCCCeEEEEEEeecCccccccccchhHHHHHhhHHHH-hhhHHH
Q 009213 311 TDLMKDQENGSASSAGAEKVKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWIDKVVPRWIFHIGQNLIL-DSDLYL 389 (540)
Q Consensus 311 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Pv~pg~sr~~~~~~rnf~~~~~~~~prw~~h~~~~~Vl-~qD~~i 389 (540)
....+.+ .....+..+.+++++||+++++||++|.++|||..+...+.+.| ..+++.|| +||+.|
T Consensus 232 ~~~~~~g------------~p~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d~~~~~~~--~~~~~~if~~ED~~i 297 (349)
T 3gke_A 232 IAVAPEG------------TPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDDPEMDGVL--RSWQAQALVKEDKVV 297 (349)
T ss_dssp EEEEETT------------SCGGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTCHHHHHHH--HHHHHHHTTTHHHHH
T ss_pred EecccCC------------CCCCCceEEEEEEEEecCCCCeEEEEEEEEecCccCchhhhHHH--HHHHhhhhhhhhHHH
Confidence 3322110 11123345778899999999999999999999986655444544 34678898 999999
Q ss_pred HHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcCC
Q 009213 390 LHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGGQ 433 (540)
Q Consensus 390 Le~Qe~~l~~~g~~~~~~~~~lp~~aD~~V~~fRrWl~~~~~g~ 433 (540)
||.||+++...+ ....+++++++|+++++|||||++++..+
T Consensus 298 le~Qq~~l~~~~---~~~~~~~~~~~D~~~v~~Rr~l~~l~~~e 338 (349)
T 3gke_A 298 VEAIERRRAYVE---ANGIRPAMLSCDEAAVRVSREIEKLEQLE 338 (349)
T ss_dssp HHHHHHTHHHHH---HTTCCCCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC---ccccccccccccHHHHHHHHHHHHHHHHH
Confidence 999999987642 12235689999999999999999998643
No 2
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3e-44 Score=379.69 Aligned_cols=311 Identities=21% Similarity=0.328 Sum_probs=219.3
Q ss_pred cccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEe
Q 009213 80 EEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS 159 (540)
Q Consensus 80 e~~~~~~~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd 159 (540)
....+|.+.||+|++++||++|+++.++++|++|||||+.+ |+++||+|+|||||++|+.|++++ +.|+||||||+||
T Consensus 17 ~~~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~-G~v~a~~n~CpHrga~L~~g~~~~-~~i~CpyHgw~f~ 94 (386)
T 2zyl_A 17 ALPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSH-GDLKVLDGYCRHMGGDLSEGTVKG-DEVACPFHDWRWG 94 (386)
T ss_dssp CCCSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTT-SCEEEEESBCTTTCCBGGGSEEET-TEEECTTTCCEEE
T ss_pred CCchhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCC-CCEEEEcCcCCCCCCCCCCCcccC-CEEEeCCCCCEEC
Confidence 34567889999999999999999999999999999999976 899999999999999999999875 6999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCccccccccCCCCCCCCCCCCCCce-eeeeeEEe-
Q 009213 160 GSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHIPELDDPSFTK-LFGNRDIP- 237 (540)
Q Consensus 160 ~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~~d~~~~~~~p~~~~~~~~~~~~-~~~~~~~~- 237 (540)
.+|+|+.+|+... .+++.++++|||++++|+||||++++.... .....+|.+++++.++|.. .....+++
T Consensus 95 ~~G~~~~~P~~~~------~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 166 (386)
T 2zyl_A 95 GDGRCKLVPYARR------TPRMARTRSWTTDVRSGLLFVWHDHEGNPP--DPAVRIPEIPEAASDEWTDWRWNRILIEG 166 (386)
T ss_dssp TTSBEEECTTCSS------CCTTCBCCEECEEEETTEEEEEECTTCCCC--CGGGCCCCCGGGGCTTBCCCEEEEEEEES
T ss_pred CCCCccccCcccc------cCcccCcceEeEEEECCEEEEEECCccCCC--cccccCcccccccCCCceEEEEEEEEEcC
Confidence 9999999997532 235678999999999999999997643211 1123457777777777654 34567889
Q ss_pred eChHHHhhhCCCCCCcccccccccccCCCceeeecCCCeeEEEEEe-ecC-C--CC-ccccc-ccceeEEecceEEEEee
Q 009213 238 YGYEVLLENLMDPAHVPYAHYGLMRTRKPKVKLDREGGRPVEMSVN-KID-I--NG-FIGKQ-EWGSSKFLAPCIFFAYT 311 (540)
Q Consensus 238 ~~~~~~iEN~lD~~H~~~vH~~~~~~~~p~~~~~r~~~~~~~~~~~-~~~-~--~G-f~~~~-~~~~~~f~~P~~~~~~~ 311 (540)
+|||.++||++|+||++|+|+++.... ....++.....+... ... . .+ ..+.. .+....|..|+++.+..
T Consensus 167 ~nwk~~~EN~~D~~H~~~~H~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~ 242 (386)
T 2zyl_A 167 SNCRDIIDNVTDMAHFFYIHFGLPTYF----KNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWL 242 (386)
T ss_dssp SCGGGGGGGGGCSTHHHHTTCEEEEEE----EEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEE
T ss_pred cCHHhHhhhcccccchhhhCcCccccc----cccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEe
Confidence 999999999999999999999875321 011111111111111 111 0 00 01111 12345778898776432
Q ss_pred ecccccccCCccccccchhcccccceEEEEEEEEECCCCeEEEEEEeecCcccccc----ccchhHHHHHhhHHHHhhhH
Q 009213 312 DLMKDQENGSASSAGAEKVKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQTWID----KVVPRWIFHIGQNLILDSDL 387 (540)
Q Consensus 312 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Pv~pg~sr~~~~~~rnf~~~~~----~~~prw~~h~~~~~Vl~qD~ 387 (540)
.... + +......+++.++|+++++|++++.+.+++..... ....+. ...+...+++||.
T Consensus 243 ~~~~-----~-----------g~~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vf~ED~ 305 (386)
T 2zyl_A 243 HNRY-----G-----------NYKSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRV-FTEGVSKGFLQDV 305 (386)
T ss_dssp EEEE-----T-----------TEEEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHH-HHHHHHHHHHHHH
T ss_pred eecc-----C-----------CcceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHH-HHHHHHHhhHHHH
Confidence 1100 0 01123456777899999999999987655432111 111111 2345678999999
Q ss_pred HHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009213 388 YLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 432 (540)
Q Consensus 388 ~iLe~Qe~~l~~~g~~~~~~~~~lp~~aD~~V~~fRrWl~~~~~g 432 (540)
.|++.|++.. . . +..+.|+++++||||+++++..
T Consensus 306 ~I~e~q~~~~-----~-----p-~~~~~D~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 306 EIWKHKTRID-----N-----P-LLVEEDGAVYQLRRWYEQFYVD 339 (386)
T ss_dssp HHHTTCCCCS-----S-----C-CCCGGGCSHHHHHHHHHGGGSC
T ss_pred HHHHhccccc-----C-----C-ccCcccHHHHHHHHHHHHhCCc
Confidence 9999876421 1 1 3457899999999999999863
No 3
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=5.4e-44 Score=384.47 Aligned_cols=339 Identities=16% Similarity=0.201 Sum_probs=226.9
Q ss_pred CcCcccc--ccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcc-cCCCe
Q 009213 72 RELETNS--QEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRI-DQWGR 148 (540)
Q Consensus 72 ~~~~~~~--~e~~~~~~~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v-~~~g~ 148 (540)
..++..+ .|.+++|.+.||+||+++||++|+++.++++|++||||| .+ |+++||+|+|||||++|+.|++ ..++.
T Consensus 25 ~~~~~~~~~~e~~~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~-G~v~a~~n~CpHrga~L~~g~~~~~~~~ 102 (446)
T 1z01_A 25 KTQSQYQPYKDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VN-GKVFALKDQCLHRGVRLSEKPTCFTKST 102 (446)
T ss_dssp HHHGGGHHHHHCTTCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ET-TEEEEEESSCTTTCCCGGGSCCCSSTTE
T ss_pred cCHHHhhhhhhhhhhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eC-CEEEEEeCcCCCCcCCCCCCccCCCCCE
Confidence 3456666 788999999999999999999899999999999999999 45 8999999999999999999985 23479
Q ss_pred EEccccCeEEeC-CCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCC----ccccccccCCCCCCC---
Q 009213 149 LQCVYHGWCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP----RYKDIIKTKKPPHIP--- 220 (540)
Q Consensus 149 l~CpYHGW~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~----~~~d~~~~~~~p~~~--- 220 (540)
|+||||||+||. +|+|+.+|+.+.. ..+.+.+|++|||++++|+||||+++++ +.. .+.+..++.++
T Consensus 103 i~CpyHgw~fd~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~-~l~~~l~~~~~~~~ 177 (446)
T 1z01_A 103 ISCWYHGFTFDLETGKLVTIVANPED----KLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVP-PLAHDLPFRFPERS 177 (446)
T ss_dssp EECTTTCEEEETTTCBEEEETTCTTC----TTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCC-CGGGGSCCCTTTTT
T ss_pred EEeCCCCeEEeCCCCCccccCCCccc----cCcccCCCcEEEEEEECCEEEEEeCCccccccCCC-ChhHhccchhhhhh
Confidence 999999999996 9999999876532 2345688999999999999999998532 110 11111111111
Q ss_pred ------------CCCCCCCceeeeeeEEeeChHHHhhhCCCCCCcccccccccccCC---C-ce-----------eeecC
Q 009213 221 ------------ELDDPSFTKLFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK---P-KV-----------KLDRE 273 (540)
Q Consensus 221 ------------~~~~~~~~~~~~~~~~~~~~~~~iEN~lD~~H~~~vH~~~~~~~~---p-~~-----------~~~r~ 273 (540)
.+.++++......++++|||++++||++|+||+ |+|+++++... . .+ ....+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (446)
T 1z01_A 178 EQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDD 256 (446)
T ss_dssp TTSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEEECCS
T ss_pred hccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeEEEec
Confidence 222334443334578999999999999999999 99999865210 0 01 00100
Q ss_pred --CCeeEEEE-------EeecCCCCcc---cccccceeEEecceEEEEeeecccccccCCccccccchhcccccceEEEE
Q 009213 274 --GGRPVEMS-------VNKIDINGFI---GKQEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKVKKLEQQRAALI 341 (540)
Q Consensus 274 --~~~~~~~~-------~~~~~~~Gf~---~~~~~~~~~f~~P~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 341 (540)
..+..... .......|.. +...+....+..|+++..... | ...+.++
T Consensus 257 ~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~~--------p-------------~~~~~~~ 315 (446)
T 1z01_A 257 DGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVENW--------P-------------EEHVVQY 315 (446)
T ss_dssp SSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEETC--------S-------------STTCEEE
T ss_pred CCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEecc--------C-------------CCCeEEE
Confidence 01110000 0000000110 011223455678887753210 1 1134567
Q ss_pred EEEEECCCCeEEEEEEeecCcccc--ccccc---hhHHHHHhhHHHHhhhHHHHHHHHhhhhccCCcccccccccCCccc
Q 009213 342 FICVPVSPGHSRLIWAFPRNFQTW--IDKVV---PRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKAD 416 (540)
Q Consensus 342 ~~~~Pv~pg~sr~~~~~~rnf~~~--~~~~~---prw~~h~~~~~Vl~qD~~iLe~Qe~~l~~~g~~~~~~~~~lp~~aD 416 (540)
..++|+++++|++++.+.+++... ..... ..++.......|+.||+.+++.||+++... ..|. ..+++++|
T Consensus 316 ~~~~Pi~~~~t~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~--~~~~--~~~l~~~D 391 (446)
T 1z01_A 316 EWYVPITDDTHEYWEILVRVCPTDEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDG--TGWD--DEQLVATD 391 (446)
T ss_dssp EEEEESSSSEEEEEEEEEEECCSHHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTS--HHHH--HCCCCGGG
T ss_pred EEEEECCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccc--cccc--cccCchhh
Confidence 889999999999988887766421 11111 112222233457899999999999987543 2232 24677899
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCCC
Q 009213 417 ALVVGFRRWLKKYAGGQFNWGGKFNAT 443 (540)
Q Consensus 417 ~~V~~fRrWl~~~~~g~~~w~~~~~~~ 443 (540)
+++++||||+++++.+.-.+.....+.
T Consensus 392 ~~i~~~Rr~l~~~~~~~~~~~~~~~~~ 418 (446)
T 1z01_A 392 ISPITWRKLASRWNRGIAKPGRGVAGA 418 (446)
T ss_dssp HHHHHHHHHHHHHCSCBCCCCCSSTTS
T ss_pred HHHHHHHHHHHHHHhhccCcccccCcc
Confidence 999999999999998875544443333
No 4
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=1.3e-43 Score=375.59 Aligned_cols=316 Identities=17% Similarity=0.275 Sum_probs=214.9
Q ss_pred cccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccc-CCCeEEccccCe
Q 009213 78 SQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCVYHGW 156 (540)
Q Consensus 78 ~~e~~~~~~~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~-~~g~l~CpYHGW 156 (540)
-.|.+.+|.+.||+|++++||++|+++.++++|++|||||+ + |+++||+|+|||||++|+.|++. .++.|+||||||
T Consensus 18 ~~e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~-G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw 95 (392)
T 2de6_A 18 YVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI-D-GKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAW 95 (392)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-T-TEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCE
T ss_pred cchhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe-C-CEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCC
Confidence 45778999999999999999998999999999999999995 5 89999999999999999999864 247899999999
Q ss_pred EEeC-CCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCccccccccCCCCCC-CCCCCCCCceeeeee
Q 009213 157 CFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHI-PELDDPSFTKLFGNR 234 (540)
Q Consensus 157 ~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~~d~~~~~~~p~~-~~~~~~~~~~~~~~~ 234 (540)
+||. +|+|+.+|+.+.. .++++.+|++|||++++|+||||++++... + +. +.+ +++.++++.......
T Consensus 96 ~f~~~~G~~~~~p~~p~~----~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~-l~----~~l~~~~~~~~~~~~~~~~ 165 (392)
T 2de6_A 96 TYRWEDGVLCDILTNPTS----AQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-P-LA----RDTPPNFLDDDMEILGKNQ 165 (392)
T ss_dssp EEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSSCC-C-GG----GGSCTTTTCTTEEEEEEEE
T ss_pred EEcCCCCccccccCCccc----cccccCCCceEeEEEECCEEEEEeCCCCCC-C-hh----HhccccccCCCeEEEEEEE
Confidence 9996 9999999976532 234668899999999999999999742211 1 11 122 345555665444557
Q ss_pred EEeeChHHHhhhCCCCCCcccccccccccCC-----C------------ceeeecC---CCeeEEEEEeec-------CC
Q 009213 235 DIPYGYEVLLENLMDPAHVPYAHYGLMRTRK-----P------------KVKLDRE---GGRPVEMSVNKI-------DI 287 (540)
Q Consensus 235 ~~~~~~~~~iEN~lD~~H~~~vH~~~~~~~~-----p------------~~~~~r~---~~~~~~~~~~~~-------~~ 287 (540)
+++|||+.++||++|+||+ |+|+++++... + .+..+.. ..+.... .... ..
T Consensus 166 ~~~~nwk~~~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~-~~~~~~p~~~~~~ 243 (392)
T 2de6_A 166 IIKSNWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDL-IGEHGVPVFEGTI 243 (392)
T ss_dssp EESSCHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEEC-GGGTCEEECEEEE
T ss_pred EEecChHhhhHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeee-cCCcccccccccc
Confidence 8999999999999999999 99999864211 0 0001100 0000000 0000 00
Q ss_pred CCc------cccc-ccceeEEecceEEEEeeecccccccCCccccccchhcccccceEEEEEEEEECCCCeEEEEEEeec
Q 009213 288 NGF------IGKQ-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKVKKLEQQRAALIFICVPVSPGHSRLIWAFPR 360 (540)
Q Consensus 288 ~Gf------~~~~-~~~~~~f~~P~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Pv~pg~sr~~~~~~r 360 (540)
.+. .+.. ......+..|+++... . +| ...+.++..++|+++++|++++.+++
T Consensus 244 ~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~--~------~p-------------~~~~~~~~~~~Pi~~~~t~~~~~~~~ 302 (392)
T 2de6_A 244 GGEVVREGAYGEKIVANDISIWLPGVLKVN--P------FP-------------NPDMMQFEWYVPIDENTHYYFQTLGK 302 (392)
T ss_dssp TTEEEEECEECSBCCCCEEEEETTTEEEEE--S------CS-------------STTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ccceeeccccCCcccceeEEEecccceecc--c------cC-------------CCCEEEEEEEeecCCCcEEEEEEEec
Confidence 000 0000 0122344567655321 0 11 01234567789999999999998887
Q ss_pred Ccccccc------ccchhHHHHHhhHHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcCC
Q 009213 361 NFQTWID------KVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGGQ 433 (540)
Q Consensus 361 nf~~~~~------~~~prw~~h~~~~~Vl~qD~~iLe~Qe~~l~~~g~~~~~~~~~lp~~aD~~V~~fRrWl~~~~~g~ 433 (540)
++..... .+...|. ......|++||+.++++||+.+... ..|.+ .++.++|+++++||||+++++.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~qD~~i~e~qq~~~~~~--~~~~~--e~~~~~D~~~~~~Rr~l~~~~~~~ 376 (392)
T 2de6_A 303 PCANDEERKKYEQEFESKWK-PMALEGFNNDDIWAREAMVDFYADD--KGWVN--EILFESDEAIVAWRKLASEHNQGI 376 (392)
T ss_dssp ECSSHHHHHHHHHHHHHTHH-HHTTTTTTHHHHHHHHHTHHHHHTS--THHHH--CCCCGGGHHHHHHHHHHHHHCSCB
T ss_pred CCCCHHHHHHHHHHHHHHHH-HhhccCCChhhHHHHHhhhhhhhcc--ccCcc--ceecchhHHHHHHHHHHHHHhhhh
Confidence 7643111 0011111 1123457899999999999977542 22432 346689999999999999998764
No 5
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=1.8e-43 Score=375.51 Aligned_cols=324 Identities=16% Similarity=0.231 Sum_probs=229.3
Q ss_pred cCccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCC-CcccCCCeEE
Q 009213 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSE-GRIDQWGRLQ 150 (540)
Q Consensus 73 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~-G~v~~~g~l~ 150 (540)
.++..+.|.+.+|.+.|++||+++||+ +|++++++++|++|||+|+.+ |+++||.|+|||||++|+. |++++ +.|+
T Consensus 26 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~d-G~v~A~~n~C~Hrga~L~~~g~~~~-~~i~ 103 (409)
T 3n0q_A 26 DAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGAD-NVIRAFHNACRHRGSVICKAKKGNN-PKLV 103 (409)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEEC-SSEE
T ss_pred CHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCC-CCEEeecCcCCcCcCCccCcCccCC-CEEE
Confidence 478889999999999999999999998 699999999999999999987 8999999999999999996 77764 6899
Q ss_pred ccccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCcc-ccccccCCCCCCCCCCCCCCce
Q 009213 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRY-KDIIKTKKPPHIPELDDPSFTK 229 (540)
Q Consensus 151 CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~-~d~~~~~~~p~~~~~~~~~~~~ 229 (540)
||||||+||.+|+|+.+|..+. .+++++.+|++|||++++|+|||+++++++. .+.+. ...+.+..++..++..
T Consensus 104 CpyHgw~fd~dG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~l~~~l~-~~~~~l~~~~~~~~~~ 178 (409)
T 3n0q_A 104 CPYHQWTYELDGRLLWARDMGP----DFEPSRHGLKTVHCRELAGLIYICLADEAPDFERFAE-VARPYLEVHDLSNAKV 178 (409)
T ss_dssp CTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHH-HHHHHHHTTCGGGEEE
T ss_pred ECCCCCEEeCCCCcccCCcCCc----ccCcccCCCceEEEEEECCEEEEEeCCCCCChHHhhh-hhhhhhccccCCCeEE
Confidence 9999999999999999997643 2456788999999999999999999876432 11111 0112233333233332
Q ss_pred -eeeeeEEeeChHHHhhhCCCCCCcccccccccccCCC--ce---e--------------eecCCC---------eeEEE
Q 009213 230 -LFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP--KV---K--------------LDREGG---------RPVEM 280 (540)
Q Consensus 230 -~~~~~~~~~~~~~~iEN~lD~~H~~~vH~~~~~~~~p--~~---~--------------~~r~~~---------~~~~~ 280 (540)
....+++++|||.++||++|+||++++|+++++.-.. .+ . .+..+. +....
T Consensus 179 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 258 (409)
T 3n0q_A 179 AHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQFRV 258 (409)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTTCCCCCEECTTSSEEE
T ss_pred eeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccCCcceeecccccceee
Confidence 2345788999999999999999999999998763210 00 0 000000 01111
Q ss_pred EEeec-------CCCCcc------cc----cccceeEEecceEEEEeeecccccccCCccccccchhcccccceEEEEEE
Q 009213 281 SVNKI-------DINGFI------GK----QEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKVKKLEQQRAALIFI 343 (540)
Q Consensus 281 ~~~~~-------~~~Gf~------~~----~~~~~~~f~~P~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~ 343 (540)
..... ..+|-. +. .......++.||++... ..+++.++.
T Consensus 259 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~------------------------~pd~~~~~~ 314 (409)
T 3n0q_A 259 ARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHF------------------------LSDHSIVFR 314 (409)
T ss_dssp EEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEE------------------------CSSCEEEEE
T ss_pred eeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEE------------------------CCCEEEEEE
Confidence 11100 111110 01 01234556889887642 125677889
Q ss_pred EEECCCCeEEEEEEeecCcc--ccccccchhHHHHHhhHHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHH
Q 009213 344 CVPVSPGHSRLIWAFPRNFQ--TWIDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVG 421 (540)
Q Consensus 344 ~~Pv~pg~sr~~~~~~rnf~--~~~~~~~prw~~h~~~~~Vl~qD~~iLe~Qe~~l~~~g~~~~~~~~~lp~~aD~~V~~ 421 (540)
++|+++++|++.+.+.++.. ...+..+.+ ...+...|++||..+++..|+++.+.. +..+.|.| ..|.++..
T Consensus 315 ~~P~~p~~t~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~ED~~l~e~~Q~G~~s~~---y~~G~~s~-~~E~~v~~ 388 (409)
T 3n0q_A 315 VTPISPTETEVTTKWLVHKDAVEGVDYDLQR--LTEVWIATNDEDREVVEFNQMGINSPA---YEPGPYSP-TQESGVLQ 388 (409)
T ss_dssp EEEEETTEEEEEEEEEEETTCCBTTTBCHHH--HHHHHHHHHHHHHHHHHHHHHHHTSTT---CCCCBCCT-TTSHHHHH
T ss_pred EEECCCCeEEEEEEEEEcCcccccchhhHHH--HHHHHHHHHHHHHHHHHHHhhhhcCCC---CCCCCCCC-CccHhHHH
Confidence 99999999999866544321 111111122 124457799999999999999998875 44566655 46999999
Q ss_pred HHHHHHHHHcCC
Q 009213 422 FRRWLKKYAGGQ 433 (540)
Q Consensus 422 fRrWl~~~~~g~ 433 (540)
|.+|+.+.+...
T Consensus 389 F~~w~~~~l~~~ 400 (409)
T 3n0q_A 389 FVEWYLSTLKRN 400 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988653
No 6
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=4.9e-43 Score=372.40 Aligned_cols=324 Identities=17% Similarity=0.244 Sum_probs=229.0
Q ss_pred cCccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCC-CCcccCCCeEE
Q 009213 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLS-EGRIDQWGRLQ 150 (540)
Q Consensus 73 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs-~G~v~~~g~l~ 150 (540)
.++..+.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+.+ |+++||+|+|||||++|+ +|++++ +.|+
T Consensus 28 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~d-G~v~A~~n~CpHrga~L~~~g~~~~-~~i~ 105 (412)
T 3vca_A 28 SPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRD-GEVRAFHNSCRHRGSLICKARQGQV-AKLV 105 (412)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCSSEEEC-SSEE
T ss_pred CHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCC-CCEEEecccCCCCCCEeecccccCC-CEEE
Confidence 478889999999999999999999998 699999999999999999986 899999999999999998 788874 6899
Q ss_pred ccccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCcc-ccccccCCCCCCCCCCCCCCce
Q 009213 151 CVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRY-KDIIKTKKPPHIPELDDPSFTK 229 (540)
Q Consensus 151 CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~-~d~~~~~~~p~~~~~~~~~~~~ 229 (540)
||||||+||.+|+|+.+|.... .+++++.+|++|+|++++|+|||+++++++. .+.+.. ..+.++.++.+++..
T Consensus 106 CPyHgw~fdldG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~-~~~~l~~~~~~~~~~ 180 (412)
T 3vca_A 106 CPYHQWTYELDGKLIWANDMGP----DFDASKYGLKPVNLRNLDGLIYICLSDTPPDFQTFAQL-ARPYLEVHDLKDAKV 180 (412)
T ss_dssp CTTTCCEECTTSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSSSCCCCHHHHHH-HHHHHHTTCGGGEEE
T ss_pred cCCCCCEEcCCCccccCCcccc----ccCcccCCCcEEEEEEECCEEEEEecCCCCCHHHHhhh-hHHhhccccCCCeEE
Confidence 9999999999999999997643 2456778999999999999999999865432 111110 112222333233332
Q ss_pred -eeeeeEEeeChHHHhhhCCCCCCcccccccccccCCC--c---eee---------------ecCC---------CeeEE
Q 009213 230 -LFGNRDIPYGYEVLLENLMDPAHVPYAHYGLMRTRKP--K---VKL---------------DREG---------GRPVE 279 (540)
Q Consensus 230 -~~~~~~~~~~~~~~iEN~lD~~H~~~vH~~~~~~~~p--~---~~~---------------~r~~---------~~~~~ 279 (540)
....+++++|||+++||++|+||++++|+++++.-.. . +.. +..+ .+...
T Consensus 181 ~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 260 (412)
T 3vca_A 181 AFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDGQYR 260 (412)
T ss_dssp EEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHTTCCCSCEECTTSSEE
T ss_pred eEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhccCCcccccccccCcee
Confidence 2455788999999999999999999999998753210 0 000 0000 01111
Q ss_pred EEEeec-------CCCCcc------cc---c-ccceeEEecceEEEEeeecccccccCCccccccchhcccccceEEEEE
Q 009213 280 MSVNKI-------DINGFI------GK---Q-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKVKKLEQQRAALIF 342 (540)
Q Consensus 280 ~~~~~~-------~~~Gf~------~~---~-~~~~~~f~~P~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~ 342 (540)
...... ..+|-. +. . ......++.|+++... ..+++.++
T Consensus 261 ~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~------------------------~pd~~~~~ 316 (412)
T 3vca_A 261 LARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHF------------------------LPDHSLTF 316 (412)
T ss_dssp EEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEE------------------------CSSCEEEE
T ss_pred eeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEE------------------------CCCEEEEE
Confidence 111100 111110 11 0 1234566889887642 12567788
Q ss_pred EEEECCCCeEEEEEEeecCc--cccccccchhHHHHHhhHHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHH
Q 009213 343 ICVPVSPGHSRLIWAFPRNF--QTWIDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVV 420 (540)
Q Consensus 343 ~~~Pv~pg~sr~~~~~~rnf--~~~~~~~~prw~~h~~~~~Vl~qD~~iLe~Qe~~l~~~g~~~~~~~~~lp~~aD~~V~ 420 (540)
.++|+++++|++.+.+.+.. ....+..+.+ ...+...|++||..+++..|+++.+.. +..+.|.| ..|.++.
T Consensus 317 ~~~P~~~~~t~v~~~~~~~~d~~~~~d~~~~~--~~~~~~~~~~ED~~l~e~~Q~G~~S~~---y~~G~~sp-~~E~~v~ 390 (412)
T 3vca_A 317 RVMPISPTETEVTTTWLVHKDAVEGVDYDLKR--LTEVWIATNDEDREIVETNQQGILSPA---YVPGPYSP-GQESGVM 390 (412)
T ss_dssp EEEEEETTEEEEEEEEEEETTCCBTTTBCHHH--HHHHHHHHHHHHHHHHHHHHHHHTSTT---CCCCBCCT-TTCHHHH
T ss_pred EEEECCCCeEEEEEEEEEccccccCccHHHHH--HHHHHHHHHHHHHHHHHHhhhhhcCCC---CCCCCCCC-CcchhHH
Confidence 89999999999986654322 1111111222 124567899999999999999998875 44566755 3699999
Q ss_pred HHHHHHHHHHcCC
Q 009213 421 GFRRWLKKYAGGQ 433 (540)
Q Consensus 421 ~fRrWl~~~~~g~ 433 (540)
.|.+|+.+.+...
T Consensus 391 ~F~~w~~~~l~~~ 403 (412)
T 3vca_A 391 QFVDWYAASLERA 403 (412)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=4.3e-40 Score=343.39 Aligned_cols=316 Identities=18% Similarity=0.293 Sum_probs=221.8
Q ss_pred cccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccc-CCCeEEccccCe
Q 009213 78 SQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCVYHGW 156 (540)
Q Consensus 78 ~~e~~~~~~~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~-~~g~l~CpYHGW 156 (540)
-.|.+.+|++.||+||+++||++|+++.++++|++|||+| .+ |+++|++|+|||||++|+.|.+. .++.|+||||||
T Consensus 21 ylE~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~d-G~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW 98 (389)
T 3gkq_A 21 YIDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VD-GVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGW 98 (389)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ET-TEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCE
T ss_pred hhhhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eC-CeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCC
Confidence 4588999999999999999999999999999999999999 45 89999999999999999999742 246899999999
Q ss_pred EEeC-CCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCccccccccCCCCCC-CCCCCCCCceeeeee
Q 009213 157 CFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHI-PELDDPSFTKLFGNR 234 (540)
Q Consensus 157 ~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~~d~~~~~~~p~~-~~~~~~~~~~~~~~~ 234 (540)
+||. +|+|+.+|+.+.. ..+.+.+|++|||++++|+|||++++.+. .+ +. +.+ +.+.+.++......+
T Consensus 99 ~Fdl~dG~cv~iP~~P~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-pp-L~----e~l~~~~~~~~~~~~~~~~ 168 (389)
T 3gkq_A 99 TYRWDNGKLVDILTNPTS----VQIGRHALKTYPVREEKGLVFLFVGDQEP-HD-LA----EDVPPGFLDADLAVHGQHR 168 (389)
T ss_dssp EEETTTCBEEEETTCTTC----TTTTSCBCCBCCEEEETTEEEEEESSSCC-CC-GG----GGSCTTTTCTTEEEEEEEE
T ss_pred EEECCCCCeecccCCccc----ccccccCCcEEEEEEECCeEEEecCCCCC-CC-ch----hhcchhccCCceEEEeEEE
Confidence 9996 9999999976542 23456789999999999999999964211 11 11 122 234445555444567
Q ss_pred EEeeChHHHhhhCCCCCCcccccccccccCC---C-ceeeecC-CCeeEEEEEeecCCCCcc------------------
Q 009213 235 DIPYGYEVLLENLMDPAHVPYAHYGLMRTRK---P-KVKLDRE-GGRPVEMSVNKIDINGFI------------------ 291 (540)
Q Consensus 235 ~~~~~~~~~iEN~lD~~H~~~vH~~~~~~~~---p-~~~~~r~-~~~~~~~~~~~~~~~Gf~------------------ 291 (540)
+++|||+.++||++|+||+ |+|+++++... . ....... .+....+..++..+.|+.
T Consensus 169 ~i~~NWK~~~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~ 247 (389)
T 3gkq_A 169 VVDANWRMGVENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQ 247 (389)
T ss_dssp EESSCHHHHHHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTE
T ss_pred EEecCchhhHHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCc
Confidence 8999999999999999999 99999876321 1 1111111 111111222222222211
Q ss_pred -------ccc-ccceeEEecceEEEEeeecccccccCCccccccchhcccccceEEEEEEEEECCCCeEEEEEEeecCcc
Q 009213 292 -------GKQ-EWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKVKKLEQQRAALIFICVPVSPGHSRLIWAFPRNFQ 363 (540)
Q Consensus 292 -------~~~-~~~~~~f~~P~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Pv~pg~sr~~~~~~rnf~ 363 (540)
+.. ......+..|++...... | ..+++.+-..+|+++++++++-.+.+.+.
T Consensus 248 ~~~~~~~~~~~~~~~~s~~lP~v~~v~~~--------~-------------~~~~~~~~~~vpi~~~~~~y~~~~~~~~~ 306 (389)
T 3gkq_A 248 PAIQGHMGSKMVAISISVWLPGVLKVDPF--------P-------------DPTLTQFEWYVPIDEGHHLYLQMLGRRVG 306 (389)
T ss_dssp EEEECBCCSBCCCCEEEEETTTEEEEESC--------S-------------STTCEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred ccccCCCCCcccceeEEEEecCeeEeccC--------C-------------CCCeEEEEEEeeccCCeEEEEEEEEEEcC
Confidence 110 113456677877664311 1 12567777789999999999876655443
Q ss_pred cc------ccccchhHHHHHhhHHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009213 364 TW------IDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 432 (540)
Q Consensus 364 ~~------~~~~~prw~~h~~~~~Vl~qD~~iLe~Qe~~l~~~g~~~~~~~~~lp~~aD~~V~~fRrWl~~~~~g 432 (540)
.. ..++-.+|.. ...+.++++|...-+++|...+.. ..|.+.. ....|..++++||...++..|
T Consensus 307 ~~~~~~~~~~~~~~~~~~-~~~~~f~~~d~~ar~~~~~~y~~~--~g~~~e~--l~~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 307 SEEEARSFEAEFREKWVE-LALNGFNDDDILARRSMEPFYADD--RGWREEV--LFESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp SHHHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHHHHHTS--HHHHHCC--CCGGGHHHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHHHHHH-HhhccccchhHHHHHHHHHhhccC--CCCChhh--ccCcchhHHHHHHHHHHhccc
Confidence 21 1112224432 335778999999999999988754 3576543 446799999999999999765
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=8.7e-40 Score=341.98 Aligned_cols=316 Identities=18% Similarity=0.252 Sum_probs=221.9
Q ss_pred ccccccccccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCccc-CCCeEEccccC
Q 009213 77 NSQEEKFDWFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRID-QWGRLQCVYHG 155 (540)
Q Consensus 77 ~~~e~~~~~~~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~-~~g~l~CpYHG 155 (540)
.-.|.+++|++.||+||+++||++|+++.++++|++|||+| .+ |+++|++|+|||||++|+.|.+. .++.|+|||||
T Consensus 23 ~yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~d-G~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHG 100 (394)
T 3gcf_A 23 RYLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AK-GEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHG 100 (394)
T ss_dssp HHHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ET-TEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTC
T ss_pred hhhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eC-CeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCC
Confidence 34588899999999999999999999999999999999999 45 89999999999999999999742 34689999999
Q ss_pred eEEeC-CCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCccccccccCCCCCC-CCCCCCCCceeeee
Q 009213 156 WCFSG-SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRYKDIIKTKKPPHI-PELDDPSFTKLFGN 233 (540)
Q Consensus 156 W~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~~d~~~~~~~p~~-~~~~~~~~~~~~~~ 233 (540)
|+||. +|+|+.+|+.+.. ..+.+.+|++|||++++|+|||++++.+. .+ +. +.+ +.+.+.++......
T Consensus 101 W~Fdl~dG~cv~iP~~p~~----~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-pp-L~----e~L~~~~~d~~~~~~~~~ 170 (394)
T 3gcf_A 101 WTYDLDDGRLVDVLTSPGS----PVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HA-LS----EDLPPGFLDEDTHLLGIR 170 (394)
T ss_dssp EEEETTTCBEEEETTSTTC----TTTTSCBCCEECEEEETTEEEEEESSSCC-CC-GG----GGSCTTTTCTTEEEEEEE
T ss_pred cEEECCCCceeccCCCccc----ccccccCceEEEEEEECCcEEEecCCCCC-CC-ch----hhcchhhcCCceEEEeEE
Confidence 99996 8999999976542 23456789999999999999999974211 11 11 122 23444556544456
Q ss_pred eEEeeChHHHhhhCCCCCCcccccccccccCC---C-ceeeecCCCeeEEEEEeecCCCCcc------------------
Q 009213 234 RDIPYGYEVLLENLMDPAHVPYAHYGLMRTRK---P-KVKLDREGGRPVEMSVNKIDINGFI------------------ 291 (540)
Q Consensus 234 ~~~~~~~~~~iEN~lD~~H~~~vH~~~~~~~~---p-~~~~~r~~~~~~~~~~~~~~~~Gf~------------------ 291 (540)
++++|||+.++||++|+||+ |+|+++++... + .+.+...+...+.. ..+..+.|..
T Consensus 171 ~~i~~NWK~~~EN~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kg~~~~~~~~~~pv~~~~~~~~ 248 (394)
T 3gcf_A 171 RTVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQV-YDENWPKGVLDRLSENYMPVFEATLDGE 248 (394)
T ss_dssp EEESSCHHHHHHHHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEE-ECSSSSCEEEECHHHHEEEECEEEETTE
T ss_pred EEEecCchhhHhhccccchh-hCchhhhcccccccccCcceeEcCCceEEe-ccCCCCcchhhhhhcccccccccccccc
Confidence 78999999999999999999 99999986421 1 11221111111111 1111122210
Q ss_pred --------cc--cccceeEEecceEEEEeeecccccccCCccccccchhcccccceEEEEEEEEECCCCeEEEEEEeecC
Q 009213 292 --------GK--QEWGSSKFLAPCIFFAYTDLMKDQENGSASSAGAEKVKKLEQQRAALIFICVPVSPGHSRLIWAFPRN 361 (540)
Q Consensus 292 --------~~--~~~~~~~f~~P~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~Pv~pg~sr~~~~~~rn 361 (540)
+. .......+..|++.+... +| ..+++++-..+|+++++++++-...+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~s~~lP~v~~v~~--------~p-------------~~~~~~~~~~vPid~~~~~~~~~~~~~ 307 (394)
T 3gcf_A 249 TVLSAELTGEEKKVAAQVSVWLPGVLKVDP--------FP-------------DPTLIQYEFYVPISETQHEYFQVLQRK 307 (394)
T ss_dssp EEEECCCCSSCBCCCSEEEEETTTEEEEES--------CS-------------STTCEEEEEEEESSSSCEEEEEEEEEE
T ss_pred ccccccccCcccccceeEEEEecCeeEecc--------CC-------------CCCeEEEEEEeeccCCeEEEEEEEEEE
Confidence 11 011245566777765431 12 125677778899999999998766554
Q ss_pred cccc------ccccchhHHHHHhhHHHHhhhHHHHHHHHhhhhccCCcccccccccCCccchHHHHHHHHHHHHHcC
Q 009213 362 FQTW------IDKVVPRWIFHIGQNLILDSDLYLLHVEERKIMDVGPANWQKACFVPTKADALVVGFRRWLKKYAGG 432 (540)
Q Consensus 362 f~~~------~~~~~prw~~h~~~~~Vl~qD~~iLe~Qe~~l~~~g~~~~~~~~~lp~~aD~~V~~fRrWl~~~~~g 432 (540)
+... ..++-.+|.. ...+.++++|...-+++|...+.. ..|.+.. ....|..++++||...++..|
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~d~~ar~~~~~~y~~~--~g~~~e~--l~~~d~~~~~~r~~~~~~~~~ 379 (394)
T 3gcf_A 308 VEGPEDVKTFEVEFEERWRD-DALHGFNDDDVWAREAQQEFYGER--DGWSKEQ--LFPPDMCIVKWRTLASERGRG 379 (394)
T ss_dssp CSSHHHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHHHHHHS--CHHHHCC--CCGGGHHHHHHHHHHHHHCSE
T ss_pred CCCHHHHHHHHHHHHHHhHH-HhhcccchhhHHHHHHHHHhhccc--CCCChhh--ccCcchhHHHHHHHHHHhccc
Confidence 4321 1112224432 335778999999999999988764 3476543 446799999999999999765
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=3.9e-36 Score=324.06 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=148.0
Q ss_pred cCccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEc
Q 009213 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (540)
Q Consensus 73 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~C 151 (540)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|||+|+.+ |+++||+|+|||||++|+.|.++.++.|+|
T Consensus 22 ~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~i~C 100 (454)
T 2gbw_A 22 DEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSD-GTFRAFINSCSHRGNQICHADSGNAKAFVC 100 (454)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCCSEEECSEEEC
T ss_pred CHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEeccCCCCCCCCcccccCCcCEEEe
Confidence 477888999999999999999999998 689999999999999999986 899999999999999999988743468999
Q ss_pred cccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCcc-ccccccCCCCCCCC-CCC--CCC
Q 009213 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRY-KDIIKTKKPPHIPE-LDD--PSF 227 (540)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~-~d~~~~~~~p~~~~-~~~--~~~ 227 (540)
|||||+||.+|+|+.+|+.....+..+++.+.+|++|+|++++|+|||+++++++. .+.+.. ..+.+.. ++. .++
T Consensus 101 pyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~~~~~l~~-~~~~l~~~~~~~~~~~ 179 (454)
T 2gbw_A 101 NYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPSLEDYLGE-FRYYLDTIWEGAGGGM 179 (454)
T ss_dssp TTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCCHHHHHGG-GHHHHHHHHTTTTTCE
T ss_pred CCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCCHHHHhhh-hHHHHHHHHhcCCCce
Confidence 99999999999999999865322112456678899999999999999999865322 111111 0011111 111 223
Q ss_pred cee--eeeeEEeeChHHHhhhC-CCCCCcccccccccc
Q 009213 228 TKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMR 262 (540)
Q Consensus 228 ~~~--~~~~~~~~~~~~~iEN~-lD~~H~~~vH~~~~~ 262 (540)
... ...+++++|||.++||+ +|+||++++|+.+++
T Consensus 180 ~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 180 ELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp EEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred EEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 322 34578999999999999 799999999976654
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=2.9e-36 Score=324.48 Aligned_cols=188 Identities=17% Similarity=0.189 Sum_probs=147.1
Q ss_pred cCccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEc
Q 009213 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (540)
Q Consensus 73 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~C 151 (540)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|||+|+.+ |+++||.|+|||||++|+.|.+..++.|+|
T Consensus 21 ~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~l~C 99 (447)
T 2bmo_A 21 DKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQND-GSVRAFLNVCRHRGKTLVHAEAGNAKGFVC 99 (447)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESBCTTTCCBCCCSSEEECSEEEC
T ss_pred CHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCC-CCEEEEeccCcCCCCCccccccCCcCeEEC
Confidence 577888999999999999999999998 688999999999999999986 899999999999999999998743468999
Q ss_pred cccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeee-EEEEcCeEEEccCCCCccc-cccccCCCCCCCC-CC-CCCC
Q 009213 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYP-STVQHDIVWFWPNIAPRYK-DIIKTKKPPHIPE-LD-DPSF 227 (540)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~yp-v~~~~G~VwV~~~~~~~~~-d~~~~~~~p~~~~-~~-~~~~ 227 (540)
|||||+||.+|+|+.+|+.....+..+++.+.+|++|| |++++|+|||+++++++.. +.+.. ..+.+.. ++ ..++
T Consensus 100 pyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~ 178 (447)
T 2bmo_A 100 GYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPPLIDYLGD-AAWYLEPTFKYSGGL 178 (447)
T ss_dssp TTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCCHHHHHTT-HHHHHHHHHTTTSCE
T ss_pred CCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCCHHHHhcc-HHHHHHHHhccCCCe
Confidence 99999999999999999753211112445678999998 9999999999998653321 11110 0001111 11 2233
Q ss_pred cee--eeeeEEeeChHHHhhhC-CCCCCcccccccccc
Q 009213 228 TKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMR 262 (540)
Q Consensus 228 ~~~--~~~~~~~~~~~~~iEN~-lD~~H~~~vH~~~~~ 262 (540)
... ...+++++|||.++||+ +|+||++++|+++++
T Consensus 179 ~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~ 216 (447)
T 2bmo_A 179 ELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALR 216 (447)
T ss_dssp EEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred EEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhh
Confidence 332 34578999999999999 799999999987665
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=1.3e-34 Score=313.32 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=146.9
Q ss_pred cCccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEc
Q 009213 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (540)
Q Consensus 73 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~C 151 (540)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|||+|+.+ |+++||+|+|||||++|+.|.+++.+.|+|
T Consensus 30 d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~-G~v~a~~n~C~Hrga~L~~g~~~~~~~i~C 108 (470)
T 2b1x_A 30 DPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEG-GEIRGHLNACRHRGMQVCRAEMGNTSHFRC 108 (470)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESSCTTTCCCSCCSSEEECSEEEC
T ss_pred CHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEecccCCCCCEeeccCcCCCCEEEE
Confidence 577888999999999999999999998 488899999999999999886 899999999999999999998764468999
Q ss_pred cccCeEEeCCCCcccCCCCCCCCCCCCCcccccceee-eEEEEcCeEEEccCCCCcc-ccccccCCCCCCCC---CCCCC
Q 009213 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVY-PSTVQHDIVWFWPNIAPRY-KDIIKTKKPPHIPE---LDDPS 226 (540)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~y-pv~~~~G~VwV~~~~~~~~-~d~~~~~~~p~~~~---~~~~~ 226 (540)
|||||+||.||+|+.+|..+...+..+++++.+|..+ .+++++|+|||+++++++. .+.+... .+.++. ....+
T Consensus 109 pyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~~~~~l~~~-~~~~d~~~~~~~~~ 187 (470)
T 2b1x_A 109 PYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADSLEDYLGDL-KFYLDIVLDRSDAG 187 (470)
T ss_dssp TTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCCHHHHHGGG-HHHHHHHHCSSSSC
T ss_pred CCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCCHHHHhcch-hHHHHHHhccCCCC
Confidence 9999999999999999986432111245667889999 5777899999999865332 1211100 001110 01223
Q ss_pred Ccee--eeeeEEeeChHHHhhhC-CCCCCcccccccccc
Q 009213 227 FTKL--FGNRDIPYGYEVLLENL-MDPAHVPYAHYGLMR 262 (540)
Q Consensus 227 ~~~~--~~~~~~~~~~~~~iEN~-lD~~H~~~vH~~~~~ 262 (540)
+... ...+++++|||.++||+ +|+||++++|++++.
T Consensus 188 ~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 188 LQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp EEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred eEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 3322 34578999999999999 999999999999764
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=7.1e-35 Score=313.12 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=148.2
Q ss_pred cCccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEc
Q 009213 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (540)
Q Consensus 73 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~C 151 (540)
.++.++.|.+.+|.+.|++||+++||+ +|++++++++|++|||+|+.+ |+++||.|+|||||++|+.|.....+.|+|
T Consensus 42 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~d-G~v~A~~n~C~Hrga~L~~g~~g~~~~i~C 120 (457)
T 3gzx_A 42 DQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKD-QSIKVFLNQCRHRGMRIVRSDGGNAKAFTC 120 (457)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSEEEC
T ss_pred CHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCC-CeEEEEeCcCCCCCcCccCCCCCcCCEEEc
Confidence 578889999999999999999999998 689999999999999999987 899999999999999999987433468999
Q ss_pred cccCeEEeCCCCcccCCCCCCCC-----CCC-CCcccccceeeeEEEEcCeEEEccCCCCcc-ccccccCCCCCCCCC-C
Q 009213 152 VYHGWCFSGSGDCKFIPQAPPDG-----PPV-HTFEKACAAVYPSTVQHDIVWFWPNIAPRY-KDIIKTKKPPHIPEL-D 223 (540)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~-----~~~-~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~-~d~~~~~~~p~~~~~-~ 223 (540)
|||||+||.+|+|+.+|..+... ... +++.+.+|++|+|.+++|+||||++++++. .+.+.. ..++++.+ +
T Consensus 121 pyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~l~e~lg~-~~~~ld~~~~ 199 (457)
T 3gzx_A 121 TYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPDLKTYLSD-AMPYMDVMLD 199 (457)
T ss_dssp TTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCCHHHHTTT-CHHHHHHHHS
T ss_pred CCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCChHHHHhh-hHHHHHHHhc
Confidence 99999999999999999853211 112 446678999999999999999999876432 222210 00111111 2
Q ss_pred C--CCCcee--eeeeEEeeChHHHhhhC-CCCCCcc-cccccccc
Q 009213 224 D--PSFTKL--FGNRDIPYGYEVLLENL-MDPAHVP-YAHYGLMR 262 (540)
Q Consensus 224 ~--~~~~~~--~~~~~~~~~~~~~iEN~-lD~~H~~-~vH~~~~~ 262 (540)
. .++... ...++++||||.++||+ +|+||++ ++|..++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 200 RTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp SSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred cCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 1 123322 34578999999999999 8999999 99998764
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=1.6e-33 Score=304.03 Aligned_cols=186 Identities=16% Similarity=0.169 Sum_probs=144.1
Q ss_pred cCccccccccccccCCeEEeeecCCCC-CCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEc
Q 009213 73 ELETNSQEEKFDWFSQWYPLMPVCDLD-KRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQC 151 (540)
Q Consensus 73 ~~~~~~~e~~~~~~~~W~~v~~~~dl~-~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~C 151 (540)
.++.++.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+.+ |+++||+|+|||||++|+.|.....+.|+|
T Consensus 40 d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~-G~v~a~~n~CpHrga~L~~g~~g~~~~i~C 118 (460)
T 1uli_A 40 DEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKN-GEIRVFLNQCRHRGMRICRADGGNAKSFTC 118 (460)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTT-SCEEEEESCCTTTCCCSCCSSEEECSCEEC
T ss_pred CHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCC-CCEEEEeeeCCCCCCCCccccCCCCCEEEc
Confidence 567788999999999999999999998 577889999999999999876 899999999999999999988743468999
Q ss_pred cccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCCcc-ccccccCCCCCCCC-CCC--CCC
Q 009213 152 VYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAPRY-KDIIKTKKPPHIPE-LDD--PSF 227 (540)
Q Consensus 152 pYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~~~-~d~~~~~~~p~~~~-~~~--~~~ 227 (540)
|||||+||.+|+|+.+|+.....+ .+++.+.+|++|+|++++|+|||+++++++. .+.+.. ..+.+.. ++. .++
T Consensus 119 pyHgw~fd~~G~~~~~P~~~~~~~-~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l~~~l~~-~~~~l~~~~~~~~~~~ 196 (460)
T 1uli_A 119 SYHGWAYDTGGNLVSVPFEEQAFP-GLRKEDWGPLQARVETYKGLIFANWDADAPDLDTYLGE-AKFYMDHMLDRTEAGT 196 (460)
T ss_dssp TTTCCEECTTCCEEECTTHHHHCT-TCCGGGSSCCEEEEEEETTEEEEECCTTSCCHHHHHTT-HHHHHHHHHCSSTTCE
T ss_pred CCCCCEEeCCCCEeeCCccccccC-CCCHhHcCCceeeEEEECCEEEEEeCCCCCCHHHHhcc-hHHHHHHHhhcCCCce
Confidence 999999999999999997532111 2456678899999999999999999865322 111110 0011111 111 122
Q ss_pred ce--eeeeeEEeeChHHHhhhC-CCCCCc-cccccccc
Q 009213 228 TK--LFGNRDIPYGYEVLLENL-MDPAHV-PYAHYGLM 261 (540)
Q Consensus 228 ~~--~~~~~~~~~~~~~~iEN~-lD~~H~-~~vH~~~~ 261 (540)
.. ....+++++|||.++||+ +|+||+ .++|...+
T Consensus 197 ~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 197 EAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp EECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred EEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 22 134578999999999999 799999 69998554
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.93 E-value=8e-26 Score=195.03 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=92.2
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEeC-CCCcc
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCK 165 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd~-~G~c~ 165 (540)
..|++|+.++||++|+++.+++.|++|+|+| .+ |+++|++|+||||+++|++|.+++ +.|+||||||+||. +|+|+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~~G~~~ 78 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VE-GEIYATDNLCTHGSARMSDGYLEG-REIECPLHQGRFDVCTGKAL 78 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ET-TEEEEEESBCSSSSCBGGGSEEET-TEEECTTTTCEEETTTCCEE
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-EC-CEEEEECCcCCCCCCCCCCCeEeC-CEEECCCCCCEEeCCCCCEe
Confidence 3699999999999999999999999999999 44 899999999999999999999874 79999999999995 99999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccC
Q 009213 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (540)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~ 202 (540)
..|.. .+|++|||++++|.|||+++
T Consensus 79 ~~P~~------------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 79 CAPVT------------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp ETTCC------------SCCCEECEEEETTEEEEECC
T ss_pred CCCCC------------CCCCEEeEEEECCEEEEEcC
Confidence 98853 25899999999999999874
No 15
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=6.2e-26 Score=197.47 Aligned_cols=102 Identities=24% Similarity=0.315 Sum_probs=92.7
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEE-EEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEe-CCCCcc
Q 009213 88 QWYPLMPVCDLDKRVPHAKKVLGLD-VVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCK 165 (540)
Q Consensus 88 ~W~~v~~~~dl~~g~~~~~~l~g~~-lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd-~~G~c~ 165 (540)
.|++|+.++||++|+++.+++.|++ |+|+|+ + |+++|++|+||||+++|++|.+++ +.|+||||||+|| .+|+|+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~tG~~~ 79 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-D-GEVFVTDNLCTHGNAMLTDGYQDG-TIIECPFHGGSFDIATGAAK 79 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-T-TEEEEEESBCSSSSCBGGGSEEET-TEEECSSTTCEEETTTCCBC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-C-CEEEEEeCcCCCCCCCCCCCEEeC-CEEEcCCCCCEEeCCCcCEe
Confidence 5999999999999999999999999 999998 5 899999999999999999999874 7999999999999 599999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCC
Q 009213 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (540)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~ 204 (540)
.+|.. ..|++|+|++++|.|||+++++
T Consensus 80 ~~P~~------------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 80 AFPCQ------------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp STTCC------------SCCCEECEEEETTEEEEECC--
T ss_pred CCCCC------------CCccEEeEEEECCEEEEeCCCC
Confidence 98853 3599999999999999998753
No 16
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=7.4e-26 Score=199.40 Aligned_cols=104 Identities=21% Similarity=0.385 Sum_probs=94.0
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCE-EEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEe-CCCCc
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVLGL-DVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDC 164 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~g~-~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd-~~G~c 164 (540)
+.|++|+.++||++|+++.+++.|+ +|+|+|+ + |+++|++|+||||+++|++|.+++ +.|+||||||+|| .+|+|
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~-g~~~A~~n~CpH~g~~L~~g~~~~-~~i~CP~Hg~~Fdl~tG~~ 79 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-G-DQFYATEDTCTHGIASLSEGTLDG-DVIECPFHGGAFNVCTGMP 79 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-T-TEEEEEESBCTTSSCBGGGSEEET-TEEECTTTCCEEETTTCCE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-C-CEEEEEeCCCCCCCCCCcCCEEeC-CEEECCCCCCEEcCCCcCE
Confidence 5799999999999999999999999 9999998 5 899999999999999999999874 7999999999999 59999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCC
Q 009213 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (540)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~ 205 (540)
+.+|.. .+|++|+|++++|.|||++++++
T Consensus 80 ~~~P~~------------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 80 ASSPCT------------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp EETTCC------------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred eCCCCc------------CCCCEEEEEEECCEEEEecCCcc
Confidence 998853 35899999999999999987543
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.93 E-value=1.8e-25 Score=195.85 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=93.7
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCC-cccCCCeEEccccCeEEeC-CCCc
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG-RIDQWGRLQCVYHGWCFSG-SGDC 164 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G-~v~~~g~l~CpYHGW~Fd~-~G~c 164 (540)
..|++|+.++||++|+++.+++.|++|+|+|+ + |+++||+|+||||+++|++| .+++ +.|+||||||+||. +|+|
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~-g~~~A~~n~CpH~g~~L~~g~~~~~-~~i~CP~Hg~~Fd~~tG~~ 80 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-D-GELFATQDRCTHGDWSLSDGGYLEG-DVVECSLHMGKFCVRTGKV 80 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-T-TEEEEEESBCTTSSCBSSTTCCEET-TEEECTTTCCEEETTTCCE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-C-CEEEEEECCCCCCCcCCCCCCEEcC-CEEECCCCCCEEeCCCCcE
Confidence 35999999999999999999999999999998 5 89999999999999999999 7764 79999999999996 8999
Q ss_pred ccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCC
Q 009213 165 KFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (540)
Q Consensus 165 ~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~ 204 (540)
+.+|.. .+|++|+|++++|+|||+++++
T Consensus 81 ~~~P~~------------~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 81 KSPPPC------------EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp EESSCC------------SCCCBCCEEEETTEEEECTTCC
T ss_pred eCCCCC------------CCccEEEEEEECCEEEEEeccc
Confidence 998842 3589999999999999998753
No 18
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.93 E-value=1.6e-25 Score=195.72 Aligned_cols=102 Identities=23% Similarity=0.376 Sum_probs=92.5
Q ss_pred CeEEeeecCCCCCCCcEEEEE-CCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEeC-CCCcc
Q 009213 88 QWYPLMPVCDLDKRVPHAKKV-LGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGDCK 165 (540)
Q Consensus 88 ~W~~v~~~~dl~~g~~~~~~l-~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd~-~G~c~ 165 (540)
.|++|+.++||++|+.+.+++ .|++|+|+|+.+ |+++|++|+|||||++|++|.+++ +.|+||||||+||. +|+|+
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fd~~tG~~~ 78 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEE-HGVKAYQAMCPHQEILLSEGSYEG-GVITCRAHLWTFNDGTGHGI 78 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETT-TEEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCBBS
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCC-CeEEEEeCcCCCCCcCCCCceEcC-CEEEcCCCCCEEeCCCccCC
Confidence 599999999999999999999 999999999876 899999999999999999999874 79999999999996 59999
Q ss_pred cCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCC
Q 009213 166 FIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (540)
Q Consensus 166 ~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~ 204 (540)
. |. ...|++|+|++++|+|||+++++
T Consensus 79 ~-p~------------~~~L~~~~v~~~~g~v~v~~~~~ 104 (111)
T 1vm9_A 79 N-PD------------DAALAEYPVEVKGDDIYVSTKGI 104 (111)
T ss_dssp S-SS------------SCBCCEECEEEETTEEEECCTTC
T ss_pred C-CC------------cCCcCEEEEEEECCEEEEeccCc
Confidence 7 52 13599999999999999999764
No 19
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.93 E-value=2e-25 Score=195.83 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=92.0
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCC-eEEEEecCCCCCCC-CCCCCcccC-CC--eEEccccCeEEeC-
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNEN-EWRVFADACPHRLA-PLSEGRIDQ-WG--RLQCVYHGWCFSG- 160 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G-~~~a~~d~CpHRga-pLs~G~v~~-~g--~l~CpYHGW~Fd~- 160 (540)
..|++|+.++||++|+++.+++.|++|+|||+.+ | +++|++|+||||++ +|++|.+.+ ++ .|+||||||+||.
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~-g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRPYH-SDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEECSS-SSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETT
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEECC-CCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCC
Confidence 4599999999999999999999999999999866 8 69999999999999 899999862 23 7999999999996
Q ss_pred CCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccC
Q 009213 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (540)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~ 202 (540)
+|+|+.+|. .+|++|||++++|+|||+++
T Consensus 84 tG~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 84 DGLCMEDEQ-------------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TTEETTTTT-------------TCCCEEEEEEETTEEEEECC
T ss_pred CccCCCCCc-------------ccccEEeEEEECCEEEEEcC
Confidence 999999884 25899999999999999975
No 20
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.92 E-value=8.8e-26 Score=195.83 Aligned_cols=101 Identities=24% Similarity=0.281 Sum_probs=92.9
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEe-CCCCccc
Q 009213 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFS-GSGDCKF 166 (540)
Q Consensus 88 ~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd-~~G~c~~ 166 (540)
+|++|+.++||++|+++.+++.|++|+|+|. + |+++|++|+||||+++|++|.+++ +.|+||||||+|| .+|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~-g~~~A~~~~CpH~g~~L~~g~~~~-~~i~Cp~Hg~~Fdl~~G~~~~ 77 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV-D-GEFFAVQDTCTHGDWALSDGYLDG-DIVECTLHFGKFCVRTGKVKA 77 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE-T-TEEEEEESBCSSSSCBGGGSEEET-TEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-C-CEEEEEeCcCCCCCCCCcCcEEeC-CEEECCCCCCEEeCCCCCEeC
Confidence 5999999999999999999999999999985 4 899999999999999999999874 7999999999999 6999999
Q ss_pred CCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCC
Q 009213 167 IPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203 (540)
Q Consensus 167 iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~ 203 (540)
+|.. .+|++||+++++|.|||++++
T Consensus 78 ~P~~------------~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 78 LPAC------------KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp TTCC------------SCCCEECEEEETTEEEECGGG
T ss_pred CCCC------------CCccEEEEEEECCEEEEEccc
Confidence 8852 358999999999999999864
No 21
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.92 E-value=5.6e-25 Score=197.96 Aligned_cols=106 Identities=19% Similarity=0.158 Sum_probs=93.8
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCC-CCCCCcccC-CC--eEEccccCeEEeC-C
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQ-WG--RLQCVYHGWCFSG-S 161 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRga-pLs~G~v~~-~g--~l~CpYHGW~Fd~-~ 161 (540)
..|++|+.++||++|+++.+++.|++|+|||+.++|+++|++|+|||||+ +|++|.+.+ +| .|+||||||+||. +
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 81 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCC
Confidence 46999999999999999999999999999998662399999999999999 599999863 23 8999999999996 9
Q ss_pred CCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCC
Q 009213 162 GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (540)
Q Consensus 162 G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~ 205 (540)
|+|+.+|. .+|++|||++++|.|||++++++
T Consensus 82 G~~~~~P~-------------~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 82 GFCLEDGA-------------YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp CCBSSCCS-------------SCCBCCCEEESSSEEEEECCCCC
T ss_pred cCCCCCCc-------------CcceEEEEEEECCEEEEEeCCCC
Confidence 99999884 35899999999999999997654
No 22
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=5.7e-25 Score=195.47 Aligned_cols=103 Identities=23% Similarity=0.268 Sum_probs=93.0
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCC--cccCCCeEEccccCeEEe-CCCC
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEG--RIDQWGRLQCVYHGWCFS-GSGD 163 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G--~v~~~g~l~CpYHGW~Fd-~~G~ 163 (540)
..|++|+.++||++|+++.+++.|++|+|+|+ + |+++|++|+|||+|++|++| .+++ +.|+||||||+|| .+|+
T Consensus 9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~-g~~~A~~n~CpH~g~~L~~G~~~~~~-~~i~CP~Hg~~Fdl~tG~ 85 (121)
T 3gce_A 9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-G-DSVYAISNLCSHAEAYLDMGVFHAES-LEIECPLHVGRFDVRTGA 85 (121)
T ss_dssp CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-T-TEEEEEESBCSSSSCBGGGSEEETTT-TEEECTTTCCEEETTTCC
T ss_pred cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-C-CEEEEEeCcCCCCCCCCCCCceeecC-CEEEcCCCCCEEcCCCcc
Confidence 35999999999999999999999999999997 4 89999999999999999999 7764 7999999999999 6999
Q ss_pred cccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCC
Q 009213 164 CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (540)
Q Consensus 164 c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~ 204 (540)
|+.+|.. .+|++|||++++|.|||+++..
T Consensus 86 ~~~~P~~------------~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 86 PTALPCV------------LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp EEETTCC------------SCCCBCCEEEETTEEEECCC--
T ss_pred EeCCCCc------------CCcceEEEEEECCEEEEEECcc
Confidence 9998853 3599999999999999998743
No 23
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=1.7e-25 Score=198.22 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCeEEeeecCCCCCCCcEEEEEC-CEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccCC----CeEEccccCeEEe-C
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVL-GLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQW----GRLQCVYHGWCFS-G 160 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~-g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~~----g~l~CpYHGW~Fd-~ 160 (540)
++|++||.++||++|+...+.+. |++|+|||+.+ |+++|++|+|||++++|+.|.+.++ +.|+||||||+|| .
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~d-G~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDD-GSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTT-SCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCC-CeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 46999999999999999999885 79999999876 8999999999999999887665422 3599999999999 7
Q ss_pred CCCcccCCCCCCCCCCCCCcccccceeeeEEEE-cCeEEEccC
Q 009213 161 SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ-HDIVWFWPN 202 (540)
Q Consensus 161 ~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~-~G~VwV~~~ 202 (540)
+|+|+..|. .++++|||+++ +|+|||.+.
T Consensus 87 tG~~~~~p~-------------~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR-------------VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT-------------CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC-------------CccceEEEEEEeCCEEEEecC
Confidence 999998774 25899999875 899999864
No 24
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=4.3e-25 Score=195.68 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=93.9
Q ss_pred CCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCC-CCCCCcccCC---CeEEccccCeEEeC-C
Q 009213 87 SQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLA-PLSEGRIDQW---GRLQCVYHGWCFSG-S 161 (540)
Q Consensus 87 ~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRga-pLs~G~v~~~---g~l~CpYHGW~Fd~-~ 161 (540)
..|++|+.++||++|+++.+++.|++|+|||+.+ |+++|++|+||||++ +|++|.++++ +.|+||||||+||. +
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~-G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPD-SGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETT-TEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecC-CeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 4699999999999999999999999999999876 899999999999999 8999998632 28999999999996 9
Q ss_pred CCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCC
Q 009213 162 GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIA 204 (540)
Q Consensus 162 G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~ 204 (540)
|+|+.+|. .+|++|||++++|.|||++++.
T Consensus 83 G~~~~~P~-------------~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 83 GQCLEDEA-------------HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp CBBSSCTT-------------CBCCEECEEESSSEEEEECCCC
T ss_pred CcCCCCCC-------------ceeeEEEEEEECCEEEEEeCCc
Confidence 99999874 2589999999999999998753
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.91 E-value=1.7e-25 Score=207.77 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=96.2
Q ss_pred ccCCeEEeeecCCCCCCCcEEEEECCEEEEEEEeCCCCeEEEEecCCCCCCCCCCCCcccC---CCeEEccccCeEEeC-
Q 009213 85 WFSQWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRNENEWRVFADACPHRLAPLSEGRIDQ---WGRLQCVYHGWCFSG- 160 (540)
Q Consensus 85 ~~~~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~~G~~~a~~d~CpHRgapLs~G~v~~---~g~l~CpYHGW~Fd~- 160 (540)
..+.|++|+.++||++|+++.++++|++|+|+|. + |+++||+|+|||||++|++|.+++ .+.|+||||||+||.
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~-G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~ 90 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH-K-GEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE-T-TEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE-C-CEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecC
Confidence 3578999999999998899999999999999995 4 899999999999999999999863 157999999999996
Q ss_pred CCCccc--C-CCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCCCC
Q 009213 161 SGDCKF--I-PQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNIAP 205 (540)
Q Consensus 161 ~G~c~~--i-P~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~~~ 205 (540)
+|+|+. | |...... +.+.++..+|++|+|++++|+|||++++++
T Consensus 91 tG~~~~~~i~P~~~~~~-~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 91 TGEGLYQSINPKDPSAK-PKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp TCEEEEEECCCC------CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred CcCEEEeccCCCccccc-cccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 999986 4 6432110 001233568999999999999999998653
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.81 E-value=6.2e-20 Score=164.77 Aligned_cols=97 Identities=21% Similarity=0.245 Sum_probs=86.1
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeC--------------------------CCCeEEEEecCCCCCCCCCCCC
Q 009213 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR--------------------------NENEWRVFADACPHRLAPLSEG 141 (540)
Q Consensus 88 ~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~--------------------------~~G~~~a~~d~CpHRgapLs~G 141 (540)
.|..+ .++||++|+...+.+.|++++|+|.. + |+++|+.|+|||+|++|++|
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~-g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKK-PEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSS-TTEEEEECCCTTTSCCCEET
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccC-CeEEEEECccCCCCeecccc
Confidence 46667 88999999999999999999999863 4 89999999999999999999
Q ss_pred cccCCCeEEccccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEE-EcCeEEE
Q 009213 142 RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (540)
Q Consensus 142 ~v~~~g~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~G~VwV 199 (540)
.+++ +.|+||||||+||.+|+|+..|.. ..|+.||+++ .+|.|||
T Consensus 83 ~~~~-~~i~CP~Hg~~fd~~G~~~~~P~~------------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 83 AGDF-GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp CTTT-EEEEETTTTEEEETTCCEEESSCC------------SCCCCCCEEESSSSEEEE
T ss_pred cCCC-CEEEcCCCCCEEcCCCCEeeCCCC------------CCCCceeEEEEeCCEEEE
Confidence 8764 689999999999999999998853 2489999999 8999987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.81 E-value=1.8e-20 Score=170.41 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=86.3
Q ss_pred CCeEEeee-cCCCCCCCcEEEE-ECCEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCcccCCCeEEccccCeEEeCCC
Q 009213 87 SQWYPLMP-VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSG 162 (540)
Q Consensus 87 ~~W~~v~~-~~dl~~g~~~~~~-l~g~~lVl~r~~~~G~~--~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd~~G 162 (540)
..|..++. ++||+++..+.+. +.|++++++|+.+ |++ +|++|+||||+++|+.|.. ++.|+||||||+||.+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~-G~i~~~A~~n~CpH~g~~L~~g~~--~~~i~CP~Hg~~Fd~tG 96 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESD-KTLATFGINAVCTHLGCVVPFNAA--ENKFICPCHGSQYNNQG 96 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTT-SSBCSEEEECBCTTTCCBCCEETT--TTEEECTTTCCEEETTC
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCC-CcEEEEEEeCcCCCCCCCCccCCC--CCEEEcCCCCCEECCCC
Confidence 34667777 8999988777665 5788888888776 899 9999999999999998873 46899999999999999
Q ss_pred CcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEccCC
Q 009213 163 DCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWPNI 203 (540)
Q Consensus 163 ~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~~ 203 (540)
+|+..|.. .+|++|++++++|.|||.+..
T Consensus 97 ~~~~~P~~------------~~L~~~~v~v~~g~V~V~~~~ 125 (139)
T 1rfs_A 97 RVVRGPAP------------LSLALAHCDVDDGKVVFVPWT 125 (139)
T ss_dssp CEEESSCC------------SCCCEEEEEEETTEEEEEECC
T ss_pred CCccCCCC------------CCCCEEEEEEECCEEEEEeCC
Confidence 99998842 258999999999999998643
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.79 E-value=3.3e-19 Score=160.90 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=85.3
Q ss_pred CeEEeeecCCCCCCCcEEEEEC--CEEEEEEEeC---------CCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCe
Q 009213 88 QWYPLMPVCDLDKRVPHAKKVL--GLDVVVWWDR---------NENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGW 156 (540)
Q Consensus 88 ~W~~v~~~~dl~~g~~~~~~l~--g~~lVl~r~~---------~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW 156 (540)
-|..|+.++||++|+++.+++. |++++|+|.. + |+++|++|+|||++++|+.+ .+ ++.|+||||||
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~-g~~~A~~n~CpH~g~~L~~~-~~-~~~i~CP~Hg~ 83 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPD-DDIVAYSVLCTHMGCPTSYD-SS-SKTFSCPCHFT 83 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTT-TCEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCC
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCC-CEEEEEeCcCCCCCCCCCcc-cC-CCEEECCCCCC
Confidence 3889999999999999999986 8999999974 5 89999999999999999973 33 46899999999
Q ss_pred EEeC--CCCcccCCCCCCCCCCCCCcccccceeeeEEEE--cCeEEEc
Q 009213 157 CFSG--SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ--HDIVWFW 200 (540)
Q Consensus 157 ~Fd~--~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~--~G~VwV~ 200 (540)
+||. +|+|+..|.. ..|+.|++++. +|.|||-
T Consensus 84 ~Fd~~~~G~~~~gP~~------------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 84 EFDAEKAGQMICGEAT------------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EEEGGGTTEEEESSCS------------SCCCEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCEEcCCCC------------CCCCEEEEEEECCCCEEEEE
Confidence 9996 8999998842 24899999999 6789984
No 29
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.64 E-value=1.9e-20 Score=168.63 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=79.5
Q ss_pred ecCCCCCCCcEEEE-ECCEEEEEEEeCCCCe--EEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEeCCCCcccCCCC
Q 009213 94 PVCDLDKRVPHAKK-VLGLDVVVWWDRNENE--WRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQA 170 (540)
Q Consensus 94 ~~~dl~~g~~~~~~-l~g~~lVl~r~~~~G~--~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd~~G~c~~iP~~ 170 (540)
..+|+++|+...+. +.|+++|++|+.+ |+ ++|++|+||||+++|+.|. + ++.|+||||||+||.+|+|+.+|..
T Consensus 22 ~~~~l~~g~~~~v~~l~g~~~vlv~~~~-G~~~v~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG~~~~~P~~ 98 (133)
T 3azc_A 22 YLAKHLPGDRSLAQGIKGDPTYVIVTED-HQIANYGLNAVCTHLGCVVPWNV-S-ENKFICPCHGSQYDSTGKVVRGPAP 98 (133)
Confidence 45677777666555 4566667667665 78 9999999999999999987 3 4689999999999999999998842
Q ss_pred CCCCCCCCCcccccceeeeEEE-EcCeEEEccCCCC
Q 009213 171 PPDGPPVHTFEKACAAVYPSTV-QHDIVWFWPNIAP 205 (540)
Q Consensus 171 ~~~~~~~~~~~~~~l~~ypv~~-~~G~VwV~~~~~~ 205 (540)
.+|++|||++ ++|.|||.++.+.
T Consensus 99 ------------~~L~~ypv~v~~~g~V~V~~~~e~ 122 (133)
T 3azc_A 99 ------------LSLALVKATVTEDDKLVFTPWTEI 122 (133)
Confidence 2599999999 9999999987543
No 30
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.75 E-value=1.7e-18 Score=162.98 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=83.6
Q ss_pred eEEeeecCCCCCCCcEEEEECC--EEEEEEEe---------CCCCeEEEEecCCCCCCCCCCCCcccCCCeEEccccCeE
Q 009213 89 WYPLMPVCDLDKRVPHAKKVLG--LDVVVWWD---------RNENEWRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWC 157 (540)
Q Consensus 89 W~~v~~~~dl~~g~~~~~~l~g--~~lVl~r~---------~~~G~~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~ 157 (540)
+..|+.++||++|+++.+++.| ++++|+|. .+ |+++|++|+|||+|++|+.| ++ ++.|+||||||+
T Consensus 51 ~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~-G~v~A~~n~CpH~G~~L~~g-~~-~~~i~CP~Hg~~ 127 (175)
T 4aay_B 51 ANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPD-GDIVGFSTICPHKGFPLSYS-AD-NKTFNCPGHFSV 127 (175)
T ss_dssp CEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTT-TCEEEEECBCTTTCCBCEEE-TT-TTEEECTTTCCE
T ss_pred cceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCC-CEEEEEeCCCCCCCCCCccC-CC-CCEEEcCCCCCE
Confidence 3479999999999999999975 58999997 34 89999999999999999998 44 478999999999
Q ss_pred EeC--CCCcccCCCCCCCCCCCCCcccccceeeeEEE-EcCeEEEc
Q 009213 158 FSG--SGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWFW 200 (540)
Q Consensus 158 Fd~--~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~G~VwV~ 200 (540)
||. +|+|+..|.. ..|+.|++++ .+|.||+-
T Consensus 128 Fd~~~tG~~~~gPa~------------~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 128 FDPEKGGQQVWGQAT------------QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp EEGGGTTEEEECSCS------------SCCCBEEEEECTTSEEEEE
T ss_pred ECCCCCceEecCCCC------------CCcCEEEEEEEcCCEEEEE
Confidence 995 5999998853 2489999999 69998854
No 31
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.67 E-value=1.2e-16 Score=152.91 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=83.3
Q ss_pred eeecCCCCCCCcEEEEECCEEEEEEEeC-------------------------CCCeEEEEecCCCCCCCCCCCCcccCC
Q 009213 92 LMPVCDLDKRVPHAKKVLGLDVVVWWDR-------------------------NENEWRVFADACPHRLAPLSEGRIDQW 146 (540)
Q Consensus 92 v~~~~dl~~g~~~~~~l~g~~lVl~r~~-------------------------~~G~~~a~~d~CpHRgapLs~G~v~~~ 146 (540)
.+.++||++|+...+.+.|++++|+|.. .+|+|+|+.|+|||+|++|+.|..+.
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~- 153 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF- 153 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT-
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC-
Confidence 4688999999999999999999999862 13899999999999999999988764
Q ss_pred CeEEccccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEE-EcCeEEE
Q 009213 147 GRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (540)
Q Consensus 147 g~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~G~VwV 199 (540)
+.|.||||||+||.+|+|+..|.. ..|..||+++ .+|.|+|
T Consensus 154 ~~~~CP~HGs~FD~~G~v~~gPa~------------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 GGYYCPCHGSHYDASGRIRKGPAP------------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSEEETTTTEEECTTCCEEESSCC------------SCCCCCCEEEETTTEEEE
T ss_pred CEEEeCCCCCEECCCCCCccCCCC------------CCCcceeEEEEECCEEEE
Confidence 689999999999999999998853 2488999998 7998887
No 32
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.67 E-value=1.6e-16 Score=144.57 Aligned_cols=93 Identities=18% Similarity=0.274 Sum_probs=80.4
Q ss_pred ecCCCCCCCcEEEEECCEEEEEEEeC---------------------------------------CCCeEEEEecCCCCC
Q 009213 94 PVCDLDKRVPHAKKVLGLDVVVWWDR---------------------------------------NENEWRVFADACPHR 134 (540)
Q Consensus 94 ~~~dl~~g~~~~~~l~g~~lVl~r~~---------------------------------------~~G~~~a~~d~CpHR 134 (540)
.+++|++|+.+++...|+++.|.|.. .+|+++|+.|+|||+
T Consensus 7 d~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H~ 86 (141)
T 2nwf_A 7 DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHL 86 (141)
T ss_dssp ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTTT
T ss_pred ecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCCC
Confidence 56899999999999999999998851 148999999999999
Q ss_pred CCCCCC-CcccCCCeEEccccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEE-EcCeEEE
Q 009213 135 LAPLSE-GRIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTV-QHDIVWF 199 (540)
Q Consensus 135 gapLs~-G~v~~~g~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~-~~G~VwV 199 (540)
|++|+. +..+ .+.|.||||||+||.+|+|+..|.. ..|..||+++ .+|.|+|
T Consensus 87 G~~l~~~~~~~-~~~~~CP~Hgs~Fd~~G~~~~gPa~------------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 87 GCVPIGGVSGD-FGGWFCPCHGSHWDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp CCCCEEEEETT-TTEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEESSSSEEEE
T ss_pred CeEccccCccC-CCEEEcCCCCCEECCCCCCccCCCC------------CCCCceeEEEEECCEEEE
Confidence 999998 6554 3689999999999999999998853 2488999999 7999887
No 33
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.66 E-value=2.3e-16 Score=150.10 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=80.7
Q ss_pred eEEeeecCCCCCCCcEEEEECCEEEEEEEeC---------------------------------------CCCeEEEEec
Q 009213 89 WYPLMPVCDLDKRVPHAKKVLGLDVVVWWDR---------------------------------------NENEWRVFAD 129 (540)
Q Consensus 89 W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~---------------------------------------~~G~~~a~~d 129 (540)
|..+ .++||++|+.+.+...|++|+|+|.. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 3444 78999999999999999999999931 1489999999
Q ss_pred CCCCCCCCCCCC-cccCCCeEEccccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEEE-cCeEEE
Q 009213 130 ACPHRLAPLSEG-RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ-HDIVWF 199 (540)
Q Consensus 130 ~CpHRgapLs~G-~v~~~g~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~-~G~VwV 199 (540)
+|||+|++|+.| ..+ .+.|.||||||+||.+|+|+..|.. ..|+.||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~-~~~~~CP~Hg~~Fd~~G~~~~gPa~------------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGD-FGGWFCPCHGSHYDSAGRIRKGPAP------------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETT-TTEEEETTTTEEECTTSCEEESSCC------------SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCC-cCEEEeCCCCCEECCCCeEeCCCCC------------CCCceEEEEEEeCCEEEE
Confidence 999999999984 222 2689999999999999999998842 24899999986 688887
No 34
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.66 E-value=1.3e-16 Score=148.86 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=59.4
Q ss_pred EEEEecCCCCCCCCCCCCcccCCCeEEccccCeEEeC-CCC-cccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEEcc
Q 009213 124 WRVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSG-SGD-CKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWFWP 201 (540)
Q Consensus 124 ~~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd~-~G~-c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~ 201 (540)
++||.|+|||+|++|+.|.+++ +.|+||||||+||. +|. |+..|.. .+|..|++++.+|.|||++
T Consensus 80 v~A~~~~CpH~G~~L~~g~~~~-~~i~CP~Hgs~Fd~~tG~~~~~gPa~------------~~L~~~~v~v~~g~V~v~~ 146 (165)
T 1nyk_A 80 VVAYSAVCTHLGCIVSQWVADE-EAALCPCHGGVYDLRHGAQVIAGPPP------------RPVPQLPVRVEDGVLVAAG 146 (165)
T ss_dssp EEEEECBCTTTCCBCCEEEGGG-TEEECTTTCCEEEGGGTTEEEESSCS------------SCCCEECEEEETTEEEECS
T ss_pred EEEEEeecCCCCeEcccccCCC-CEEECCCCCCEEcCCCCCeeecCCCC------------CCCcEEEEEEECCEEEEEe
Confidence 9999999999999999998874 68999999999995 486 9998842 2589999999999999998
Q ss_pred CC
Q 009213 202 NI 203 (540)
Q Consensus 202 ~~ 203 (540)
+.
T Consensus 147 ~~ 148 (165)
T 1nyk_A 147 EF 148 (165)
T ss_dssp SC
T ss_pred cC
Confidence 74
No 35
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.66 E-value=2.8e-16 Score=149.22 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=81.9
Q ss_pred CeEEeeecCCCCCCCcEEEEECCEEEEEEEeCC-------------------------CCeEEEEecCCCCCCCC-CCCC
Q 009213 88 QWYPLMPVCDLDKRVPHAKKVLGLDVVVWWDRN-------------------------ENEWRVFADACPHRLAP-LSEG 141 (540)
Q Consensus 88 ~W~~v~~~~dl~~g~~~~~~l~g~~lVl~r~~~-------------------------~G~~~a~~d~CpHRgap-Ls~G 141 (540)
.|..| .++||++|+...+.+.|++++|+|..+ +|+|+|+.|+|||+|+. +..+
T Consensus 62 ~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~~~ 140 (185)
T 3cx5_E 62 AKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEA 140 (185)
T ss_dssp CCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEEEE
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceeccCC
Confidence 58889 699999999999999999999999741 38999999999999995 6554
Q ss_pred cccCCCeEEccccCeEEeCCCCcccCCCCCCCCCCCCCcccccceeeeEEEEcCeEEE
Q 009213 142 RIDQWGRLQCVYHGWCFSGSGDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQHDIVWF 199 (540)
Q Consensus 142 ~v~~~g~l~CpYHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~~G~VwV 199 (540)
. + .+.|.||||||+||.+|+|+..|.. ..|..+|+.+.+|.|||
T Consensus 141 ~-~-~~~~~CPcHGs~FD~~G~v~~gPa~------------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 141 G-D-FGGWFCPCHGSHYDISGRIRKGPAP------------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp T-T-TTEEEETTTTEEECTTCCEEESSCC------------SCCCCCCEEEETTEEEE
T ss_pred C-C-CCEEEcCCCCCEECCCCCEecCCCC------------CCcceEEEEEECCEEEE
Confidence 2 2 3689999999999999999998842 13777888889999987
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.60 E-value=9.1e-17 Score=152.04 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=79.2
Q ss_pred cCCCCCCCcEEEE-ECCEEEEEEEeCCCCeE--EEEecCCCCCCCCCCCCcccCCCeEEccccCeEEeCCCCcccCCCCC
Q 009213 95 VCDLDKRVPHAKK-VLGLDVVVWWDRNENEW--RVFADACPHRLAPLSEGRIDQWGRLQCVYHGWCFSGSGDCKFIPQAP 171 (540)
Q Consensus 95 ~~dl~~g~~~~~~-l~g~~lVl~r~~~~G~~--~a~~d~CpHRgapLs~G~v~~~g~l~CpYHGW~Fd~~G~c~~iP~~~ 171 (540)
.+||++|+...+. +.|++++++|+.+ |++ +|+.|+|||+|++|+.|.. ++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~-g~~~~~a~~~~CtH~G~~l~~~~~--~~~~~CP~Hgs~Fd~~G~~~~gPa~- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESK-EAIRDYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDETGRVIRGPAP- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTT-CCBCSCCCBCBCTTTSCBCCBCSS--SSSEECTTTCCEECSSSCCCSSSCC-
T ss_pred ccccCCCceEEEeccCCCeEEEEEECC-CcEEEEEEeCccCCCCCCCcccCC--CCEEECCCCCCEECCCCcEecCCCC-
Confidence 4678888877775 6788999989876 787 9999999999999998873 3689999999999999999998842
Q ss_pred CCCCCCCCcccccceeeeEEEEcCeEEEccC
Q 009213 172 PDGPPVHTFEKACAAVYPSTVQHDIVWFWPN 202 (540)
Q Consensus 172 ~~~~~~~~~~~~~l~~ypv~~~~G~VwV~~~ 202 (540)
..|+.||+++++|.|||.+-
T Consensus 146 -----------~~L~~~~v~v~~g~v~v~~~ 165 (179)
T 1vf5_D 146 -----------LSLALCHATVQDDNIVLTPW 165 (179)
T ss_dssp -----------SCCBCCCCCCSSSSCCCCCC
T ss_pred -----------CCCCeEEEEEECCEEEEEee
Confidence 24899999999999998763
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.51 E-value=4e-15 Score=143.28 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=71.1
Q ss_pred EEEEECCEEEEEEEeC------------CCCeEEEEecCCCCCCCCCCCCcc----------cCCCeEEccccCeEEeCC
Q 009213 104 HAKKVLGLDVVVWWDR------------NENEWRVFADACPHRLAPLSEGRI----------DQWGRLQCVYHGWCFSGS 161 (540)
Q Consensus 104 ~~~~l~g~~lVl~r~~------------~~G~~~a~~d~CpHRgapLs~G~v----------~~~g~l~CpYHGW~Fd~~ 161 (540)
..+++.|.+++++|+. + |+++|+.|+|||+|++|+.|.+ ..++.|+||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~-g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~ 134 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPN-GTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALK 134 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTT-TCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGG
T ss_pred ceEeeCCceEEEEecCccccccccccccC-CEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCC
Confidence 4567788888888864 4 8999999999999999999864 224689999999999966
Q ss_pred --CCcccCCCCCCCCCCCCCcccccceeeeEEEE--cCeEEEccCC
Q 009213 162 --GDCKFIPQAPPDGPPVHTFEKACAAVYPSTVQ--HDIVWFWPNI 203 (540)
Q Consensus 162 --G~c~~iP~~~~~~~~~~~~~~~~l~~ypv~~~--~G~VwV~~~~ 203 (540)
|+|+..|.. ..|+.|++.+. +|.|||....
T Consensus 135 tGG~v~~gPa~------------~~L~~~~v~v~~~~g~v~v~g~~ 168 (204)
T 1jm1_A 135 DGGVVVSGPAP------------RPLPIVILDYDSSTGDIYAVGTN 168 (204)
T ss_dssp GTSEEEESSCC------------SCCCBEEEEECTTTCEEEEEEES
T ss_pred CCCeEecCCCC------------CCCCeEeeEEEecCCEEEEEeCC
Confidence 699988842 24889999987 9999987543
No 38
>3hug_B Probable conserved membrane protein; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.48 E-value=5 Score=34.03 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCChhhHHHHHHhhcccChhHHHHHHHHHHHHHHHHH
Q 009213 421 GFRRWLKKYAGGQFNWGGKFNATLPPTPPREQLMDRYWSHVVNCKSCNAAHKSLSALEVTLQV 483 (540)
Q Consensus 421 ~fRrWl~~~~~g~~~w~~~~~~~lp~~~~~e~lldRy~~Ht~~C~sC~~Al~~~~~~~~~~~~ 483 (540)
.++.|+..|+.|. |+ +.--.++++|-..|+.|++.++.++.+...+..
T Consensus 26 ~l~eLL~aYalGa----------Ld-----~~e~~~vEaHLa~Cp~CR~ev~eL~~~~a~L~~ 73 (108)
T 3hug_B 26 HYAMWDAAYVLGA----------LS-----AADRREFEAHLAGCPECRGAVTELCGVPALLSQ 73 (108)
T ss_dssp GGGGGHHHHHHTC----------SC-----HHHHHHHHHHHHTCHHHHHHHHHHTTHHHHHTT
T ss_pred HHHHHHHHHHcCC----------CC-----HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 4667778887653 32 233457899999999999999999986555543
No 39
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=46.45 E-value=8.6 Score=32.85 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=16.0
Q ss_pred hcccChhHHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSAL 477 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~~ 477 (540)
|+..|+.|++|++.++.-
T Consensus 9 ~~~~C~~c~ka~~~L~~~ 26 (120)
T 3fz4_A 9 EYPKCSTCRRAKAELDDL 26 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 678999999999999863
No 40
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=44.34 E-value=9.9 Score=32.42 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=15.5
Q ss_pred hcccChhHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSA 476 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~ 476 (540)
|...|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (119)
T 3f0i_A 10 HNPKCSKSRETLALLEN 26 (119)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67899999999999986
No 41
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=42.44 E-value=11 Score=32.23 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.4
Q ss_pred hcccChhHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSA 476 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~ 476 (540)
|+..|+.|++|++.++.
T Consensus 10 ~~p~C~~c~ka~~~L~~ 26 (120)
T 3gkx_A 10 QYPACSTCQKAKKWLIE 26 (120)
T ss_dssp ECTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67899999999999986
No 42
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=39.72 E-value=12 Score=31.96 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=15.4
Q ss_pred hcccChhHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSA 476 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~ 476 (540)
|...|+.|++|++.++.
T Consensus 11 ~~p~C~~c~ka~~~L~~ 27 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQ 27 (121)
T ss_dssp CCTTCHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 67899999999999985
No 43
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=36.09 E-value=16 Score=31.08 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=15.2
Q ss_pred hcccChhHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSA 476 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~ 476 (540)
|...|+.|++|++.++.
T Consensus 6 ~~~~C~~c~ka~~~L~~ 22 (120)
T 3l78_A 6 LSPSCTSCRKARAWLNR 22 (120)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56789999999999986
No 44
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=35.78 E-value=16 Score=32.14 Aligned_cols=17 Identities=6% Similarity=0.063 Sum_probs=15.4
Q ss_pred hcccChhHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSA 476 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~ 476 (540)
|...|+.|++|++.++.
T Consensus 8 ~~p~C~~crkak~~L~~ 24 (141)
T 1s3c_A 8 HNPASGTSRNTLEMIRN 24 (141)
T ss_dssp CCTTCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 67899999999999986
No 45
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=35.58 E-value=16 Score=30.57 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=15.2
Q ss_pred hcccChhHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSA 476 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~ 476 (540)
|+.+|+.|++|.+.++.
T Consensus 6 ~~~~C~~C~kak~~L~~ 22 (114)
T 1rw1_A 6 GIKACDTMKKARTWLDE 22 (114)
T ss_dssp ECSSCHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHH
Confidence 56799999999999986
No 46
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=35.35 E-value=21 Score=33.07 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHHHhhcccChhHHHHHHHHHHHH
Q 009213 454 MDRYWSHVVNCKSCNAAHKSLSALE 478 (540)
Q Consensus 454 ldRy~~Ht~~C~sC~~Al~~~~~~~ 478 (540)
--...+|-..|+.|++.++.++++.
T Consensus 25 ~~~ve~HL~~C~~Cr~~v~~l~~~~ 49 (195)
T 2q1z_B 25 SLVVATHLSLCDECRARAGALDAVG 49 (195)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHCHHHHHHHHHHHHHH
Confidence 3567899999999999999998864
No 47
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=33.42 E-value=18 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.8
Q ss_pred hcccChhHHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSAL 477 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~~ 477 (540)
|+..|+.|++|++.++..
T Consensus 11 ~~~~C~~C~ka~~~L~~~ 28 (120)
T 2kok_A 11 GIKNCDTMKKARIWLEDH 28 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 578999999999999864
No 48
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=23.30 E-value=35 Score=29.26 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=15.6
Q ss_pred hcccChhHHHHHHHHHHH
Q 009213 460 HVVNCKSCNAAHKSLSAL 477 (540)
Q Consensus 460 Ht~~C~sC~~Al~~~~~~ 477 (540)
|...|+.|++|.+.++..
T Consensus 7 ~~~~C~~C~ka~~~L~~~ 24 (132)
T 1z3e_A 7 TSPSCTSCRKARAWLEEH 24 (132)
T ss_dssp ECTTCHHHHHHHHHHHHT
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 567999999999999863
Done!