Your job contains 1 sequence.
>009214
MFFFLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSL
ADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQE
LLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSII
HRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGM
KGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLH
PNCSRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPA
ENLPLAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSD
DILRPTLDDKLNTLHETIASLASESKSEASEEEHVLENFHSSRTIRKLVMDCPKFASTLW
KNALKGKSEFWAQGHSCKVVTAFLESSDFKVRELAKTELQPLIDSGSLKIPEAKQLPKEV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009214
(540 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2086760 - symbol:PUM24 "pumilio 24" species:37... 1561 2.8e-160 1
UNIPROTKB|Q15397 - symbol:KIAA0020 "Pumilio domain-contai... 448 1.8e-47 2
UNIPROTKB|E2RBF2 - symbol:KIAA0020 "Uncharacterized prote... 441 3.5e-45 2
RGD|1564753 - symbol:LOC499339 "hypothetical protein LOC4... 447 8.0e-45 2
UNIPROTKB|A2VDN9 - symbol:KIAA0020 "Uncharacterized prote... 437 1.4e-44 2
MGI|MGI:106253 - symbol:D19Bwg1357e "DNA segment, Chr 19,... 440 1.5e-44 2
ZFIN|ZDB-GENE-030131-9808 - symbol:si:ch211-241o7.5 "si:c... 428 2.3e-44 2
UNIPROTKB|F1SJG9 - symbol:LOC100152831 "Uncharacterized p... 429 2.8e-43 2
UNIPROTKB|E1C1R5 - symbol:KIAA0020 "Uncharacterized prote... 425 9.4e-42 2
DICTYBASE|DDB_G0288551 - symbol:DDB_G0288551 "pumilio RNA... 367 1.7e-38 2
POMBASE|SPCP1E11.11 - symbol:puf6 "Puf family RNA-binding... 357 1.5e-35 2
WB|WBGene00014165 - symbol:puf-12 species:6239 "Caenorhab... 365 1.3e-32 1
CGD|CAL0005913 - symbol:orf19.3547 species:5476 "Candida ... 348 6.2e-32 2
SGD|S000002904 - symbol:PUF6 "Pumilio-homology domain pro... 343 1.6e-31 2
ASPGD|ASPL0000058629 - symbol:AN10173 species:162425 "Eme... 287 1.5e-28 2
UNIPROTKB|G4MRT4 - symbol:MGG_13803 "Uncharacterized prot... 270 3.0e-25 2
FB|FBgn0015527 - symbol:pen "penguin" species:7227 "Droso... 306 1.1e-24 2
UNIPROTKB|F1NWW8 - symbol:KIAA0020 "Uncharacterized prote... 222 6.9e-15 3
UNIPROTKB|I3LI55 - symbol:I3LI55 "Uncharacterized protein... 210 5.6e-14 2
UNIPROTKB|D4A5Q5 - symbol:D4A5Q5 "Uncharacterized protein... 178 7.7e-13 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 150 1.7e-06 2
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 134 2.4e-05 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 124 3.0e-05 1
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 123 0.00038 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 123 0.00050 1
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 123 0.00052 1
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 123 0.00060 1
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 123 0.00060 1
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 121 0.00068 1
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 123 0.00069 1
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 121 0.00086 1
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 122 0.00088 1
>TAIR|locus:2086760 [details] [associations]
symbol:PUM24 "pumilio 24" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006406 "mRNA export from nucleus" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB028608 eggNOG:NOG273657 KO:K14844 EMBL:AY045638
IPI:IPI00521400 RefSeq:NP_566559.1 UniGene:At.5720
ProteinModelPortal:Q9LRZ3 SMR:Q9LRZ3 STRING:Q9LRZ3 PaxDb:Q9LRZ3
PRIDE:Q9LRZ3 EnsemblPlants:AT3G16810.1 GeneID:820934
KEGG:ath:AT3G16810 TAIR:At3g16810 HOGENOM:HOG000070534
InParanoid:Q9LRZ3 OMA:IKHGSAK PhylomeDB:Q9LRZ3
ProtClustDB:CLSN2688458 Genevestigator:Q9LRZ3 Uniprot:Q9LRZ3
Length = 641
Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
Identities = 316/533 (59%), Positives = 395/533 (74%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+LISEA++KMKGK+PEIA SHVSSRVLQTCVK+CSQAE+D +F ELQP FL+LA N YAV
Sbjct: 110 KLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAV 169
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYS 127
H ++KMLD ASK+QLA IS+L GHVA LLRH+ GS+VVEHAY LG+A QKQELL ELYS
Sbjct: 170 HFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYS 229
Query: 128 TELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEY 187
TELQLFK L + E +VD+I+KLGLQK +V RHM ++IQPILEKGI+DH+I H++L+EY
Sbjct: 230 TELQLFKGLTTSNEKTVVDIIAKLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEY 289
Query: 188 LSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXV 247
L++ADK+SAAD++Q L+G LL+RM+HTRDGS++ ML +KHGSAKER +
Sbjct: 290 LTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKKIIKAMKEHVKKM 349
Query: 248 AHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSRYX 307
A DQ GSMVL CI SIVDDTKL+ KII+REL++ +K+LVMDKNGRR LLQLLHPN SRY
Sbjct: 350 AFDQFGSMVLACIFSIVDDTKLVTKIIVRELEATLKDLVMDKNGRRPLLQLLHPNSSRYL 409
Query: 308 XXXXXXXXXXXXXXXCAKEGSEVNSEAKN---NESSKEMADQEVVAVQADESTSPAENLP 364
C+ + SE +S+ K+ NE +E D++ V E + EN+
Sbjct: 410 SHDDLAALDLSVPSLCSMDKSETSSKTKDTDGNEIGEETKDEQEDTVA--EHSDHEENVT 467
Query: 365 LAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILR 424
A GGKKDP VRRQELLV+SGLAE +IDVC+ENA E L+S FG EV+YEVA GGSD IL
Sbjct: 468 -AMGGKKDPLVRRQELLVNSGLAERLIDVCVENAEEFLQSKFGNEVMYEVAIGGSDGILC 526
Query: 425 PTLDDKLNTLHETIXXXXXXXX--XXXXXXXHVLENFHSSRTIRKLVMDCPKFASTLWKN 482
P+L +KL L+E I H+LENFHSSRTIR+LV++ P FAS L+K
Sbjct: 527 PSLSEKLCELYEAISSVAAEPKPQESEKDSEHILENFHSSRTIRRLVLNRPGFASILFKK 586
Query: 483 ALKGKSEFWAQGHSCKVVTAFLESSDFKVRELAKTELQPLIDSGSLKIPEAKQ 535
AL GK WAQGH K+++AF+E+ D +VRE+AKTELQ L++ G+LKI K+
Sbjct: 587 ALSGKCRSWAQGHCSKILSAFVETEDVQVREMAKTELQVLVNEGTLKISATKK 639
>UNIPROTKB|Q15397 [details] [associations]
symbol:KIAA0020 "Pumilio domain-containing protein
KIAA0020" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:CH471071 EMBL:AK292169 EMBL:AL354723 EMBL:AL589675
EMBL:BC016137 EMBL:D13645 EMBL:AF490254 EMBL:CR456957 EMBL:AY047588
EMBL:AY047589 EMBL:AY047590 IPI:IPI00791325 RefSeq:NP_055693.4
UniGene:Hs.493309 ProteinModelPortal:Q15397 IntAct:Q15397
MINT:MINT-1404790 STRING:Q15397 PhosphoSite:Q15397 DMDM:81175177
SWISS-2DPAGE:Q15397 PaxDb:Q15397 PRIDE:Q15397 DNASU:9933
Ensembl:ENST00000397885 GeneID:9933 KEGG:hsa:9933 UCSC:uc003zhp.1
CTD:9933 GeneCards:GC09M002720 HGNC:HGNC:29676 HPA:HPA002353
MIM:609960 neXtProt:NX_Q15397 PharmGKB:PA134895115 eggNOG:NOG273657
HOVERGEN:HBG052166 InParanoid:Q15397 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 ChiTaRS:KIAA0020 GenomeRNAi:9933 NextBio:37470
Bgee:Q15397 CleanEx:HS_KIAA0020 Genevestigator:Q15397
GermOnline:ENSG00000080608 Uniprot:Q15397
Length = 648
Score = 448 (162.8 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 101/299 (33%), Positives = 174/299 (58%)
Query: 7 IRLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 65
++L+S+ LQK+ +GKI IA +H S+RV+Q ++Y ++ +R FEEL+ + L+ Y
Sbjct: 156 VKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKY 214
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE- 124
+ ++VKK L SK Q+A I + GHV +LRH S +VE+AY +++ +L E
Sbjct: 215 SRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEE 274
Query: 125 LYSTELQLFKNLVSIKESRLVDVISKLGLQKAS-VLRHMASVIQPILEK-GIIDHSIIHR 182
LY QL+K+ + R +D + ++ +K ++ M ++ P+ +K +I HS++H+
Sbjct: 275 LYGNTFQLYKSA----DHRTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHK 330
Query: 183 VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXX 242
V +++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+R
Sbjct: 331 VFLDFFTYAPPKLRSEMIEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKT 389
Query: 243 XXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
VA+ Q +VLL +DDTKL+ +III E+ S + +V DK GR+VLL LL P
Sbjct: 390 YVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSP 448
Score = 67 (28.6 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 36/164 (21%), Positives = 71/164 (43%)
Query: 370 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 429
KKD VRR+ELL S ++ +++ E+A E++ ++ ++ + D+ +PT++
Sbjct: 472 KKDTEVRRRELLES--ISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDV-QPTMN- 527
Query: 430 KLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVMDCPK---------FASTLW 480
+ +L T H+ E+ ++ L+ K FA TL
Sbjct: 528 AIASLAAT-----GLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLV 582
Query: 481 KNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 523
++ + WA ++++ L+S D +V K L+ LI
Sbjct: 583 EHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLI 626
>UNIPROTKB|E2RBF2 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:AAEX03000606
EMBL:AAEX03000607 Ensembl:ENSCAFT00000003228 Uniprot:E2RBF2
Length = 648
Score = 441 (160.3 bits), Expect = 3.5e-45, Sum P(2) = 3.5e-45
Identities = 98/299 (32%), Positives = 174/299 (58%)
Query: 7 IRLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 65
++L+S+ LQK+ +GKI IA +H S+RV+Q ++Y ++ +R+ FEEL+ F+ L+ Y
Sbjct: 156 VKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQREQAFEELRDDFVQLSKAKY 214
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE- 124
+ ++VKK L SK Q+A + + GHV +LRH S +VE+AY +++ +L E
Sbjct: 215 SRNIVKKFLMYGSKPQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEE 274
Query: 125 LYSTELQLFKNLVSIKESRLVDVISKLGLQKAS-VLRHMASVIQPILEK-GIIDHSIIHR 182
LY QL+K+ + +D + + +K ++ M ++ P+ +K +I HS++H+
Sbjct: 275 LYGNTFQLYKSA----DHPTLDKVLETQPEKLDLIMDEMKQILTPMAQKEAVIKHSLVHK 330
Query: 183 VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXX 242
V +++ + A +++I+ + ++ + HT DG+++ M C+ HG+ K+R
Sbjct: 331 VFLDFFTYAPPKLRSEMIEAIR-EAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKT 389
Query: 243 XXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
VA+ Q +VLL +DDTKL+ +III E+ + + +V DK GR+VLL LL P
Sbjct: 390 YIEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSP 448
Score = 54 (24.1 bits), Expect = 3.5e-45, Sum P(2) = 3.5e-45
Identities = 35/164 (21%), Positives = 69/164 (42%)
Query: 370 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 429
KKD +RR+ELL S ++ +++ +A E++ ++ ++ D+ +P +D
Sbjct: 472 KKDTAIRRRELLES--ISPALLSYLQGHAQEVVLDKSACVLVSDILGAAIGDV-QPAMD- 527
Query: 430 KLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVMDCPK---------FASTLW 480
+ +L T H+ E+ ++ L+ K FA TL
Sbjct: 528 AIASLAAT-----ELHPGGKDGELHIAEHPAGHLVLKWLIEQDEKMKESGREGCFAKTLI 582
Query: 481 KNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 523
++ + WA ++++ L+SSD +V K L+ LI
Sbjct: 583 EHVGMKNLKSWASVNRGAILLSSLLQSSDHEVAHKIKAGLKGLI 626
Score = 38 (18.4 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 511 VRELAKTELQPLIDSGSLKIPE 532
+ LA TEL P G L I E
Sbjct: 529 IASLAATELHPGGKDGELHIAE 550
>RGD|1564753 [details] [associations]
symbol:LOC499339 "hypothetical protein LOC499339" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1564753 SUPFAM:SSF48371
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:BC092579 EMBL:BC098744 IPI:IPI00563669 RefSeq:NP_001020207.1
UniGene:Rn.127943 UniGene:Rn.52964 ProteinModelPortal:Q562C7
STRING:Q562C7 PhosphoSite:Q562C7 PRIDE:Q562C7
Ensembl:ENSRNOT00000033724 GeneID:499339 KEGG:rno:499339
InParanoid:Q562C7 NextBio:702600 Genevestigator:Q562C7
GermOnline:ENSRNOG00000012574 Uniprot:Q562C7
Length = 647
Score = 447 (162.4 bits), Expect = 8.0e-45, Sum P(2) = 8.0e-45
Identities = 104/299 (34%), Positives = 173/299 (57%)
Query: 7 IRLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 65
++L+S+ LQK+ +GKI IA +H S+RV+Q ++Y S+ +R FEELQ + L+ Y
Sbjct: 155 VKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKY 213
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE- 124
+ ++VKK L SK Q+A I + GHV +LRH S +VE+AY +++ +L E
Sbjct: 214 SRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEE 273
Query: 125 LYSTELQLFKNLVSIKESRLVDVI-SKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHR 182
LY QL+K+ ++++V KL L +L M ++ P+ +K +I HS++H+
Sbjct: 274 LYGNTFQLYKSADHPTLEKVLEVQPGKLEL----ILDEMKQILTPMAQKEAVIKHSLVHK 329
Query: 183 VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXX 242
V +++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+R
Sbjct: 330 VFLDFFTYAPPKLRSELIEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKT 388
Query: 243 XXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
+A+ Q +VLL +DDTKL+ +III E+ S + +V DK GR+VLL LL P
Sbjct: 389 YVEKIANGQYSHLVLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSP 447
Score = 43 (20.2 bits), Expect = 8.0e-45, Sum P(2) = 8.0e-45
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 370 KKDPRVRRQELLVS 383
KKD +RR+ELL S
Sbjct: 471 KKDTAIRRRELLES 484
>UNIPROTKB|A2VDN9 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 CTD:9933
eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844 OMA:RKDCDKE
OrthoDB:EOG4X3H13 GeneTree:ENSGT00390000015757 HOGENOM:HOG000237322
EMBL:DAAA02022736 EMBL:BC133332 EMBL:BT030563 IPI:IPI00693374
RefSeq:NP_001091499.1 UniGene:Bt.24626 STRING:A2VDN9
Ensembl:ENSBTAT00000017765 GeneID:514957 KEGG:bta:514957
InParanoid:A2VDN9 NextBio:20871591 Uniprot:A2VDN9
Length = 647
Score = 437 (158.9 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 101/299 (33%), Positives = 173/299 (57%)
Query: 7 IRLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 65
++L+S+ LQK+ +GKI IA +H S+RV+Q +++ ++ +R FEEL+ + L+ Y
Sbjct: 155 VKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCYIQFGNEEQRKQAFEELRGDLVELSKAKY 213
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE- 124
+ ++VKK L SK Q+A I + GHV LLRH S +VE+AY +++ +L E
Sbjct: 214 SRNIVKKFLMYGSKAQIAEIIRSFKGHVRKLLRHAEASAIVEYAYNDKAILEQRNMLTEE 273
Query: 125 LYSTELQLFKNLVSIKESRLVDVI-SKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHR 182
LY QL+K+ ++++V KL L ++ M ++ P+ +K +I HS++H+
Sbjct: 274 LYGNTFQLYKSADHPTLDKVLEVQPEKLEL----IMDEMKQILTPMAQKEAVIKHSLVHK 329
Query: 183 VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXX 242
V +++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+R
Sbjct: 330 VFLDFFTYAPPKLRSEMIEAIR-EAVVYLAHTHDGARVAMYCLWHGTPKDRKVIVKTMKT 388
Query: 243 XXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
VA+ Q +VLL +DDTKL+ +III E+ + + +V DK GR+VLL LL P
Sbjct: 389 YIEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSP 447
Score = 53 (23.7 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 31/160 (19%), Positives = 68/160 (42%)
Query: 370 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 429
KKD +RR+ELL S ++ +++ +A E++ ++ ++ + D+ +P +D
Sbjct: 471 KKDTEIRRRELLES--ISPALLSYLQGHAQEVVLDKSACVLVADILGTATGDV-QPAMDA 527
Query: 430 KLNTLHETIXXXXXXXXXXXXX--XXHVLENF--HSSRTIRKLVMD-CPKFASTLWKNAL 484
+ + H++ + + +++ + C FA TL +
Sbjct: 528 VASLAAAELHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKERGREGC--FAKTLIERVG 585
Query: 485 KGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 523
+ WA ++++ L+SSD +V K L+ LI
Sbjct: 586 VKNLKSWASVNRGAIILSSLLQSSDQEVANKVKAGLKSLI 625
>MGI|MGI:106253 [details] [associations]
symbol:D19Bwg1357e "DNA segment, Chr 19, Brigham & Women's
Genetics 1357 expressed" species:10090 "Mus musculus" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:106253 GO:GO:0005783
SUPFAM:SSF48371 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 HOVERGEN:HBG052166 KO:K14844
OMA:RKDCDKE OrthoDB:EOG4X3H13 EMBL:AK050829 EMBL:AK088081
EMBL:AK141893 EMBL:AK172872 IPI:IPI00222675 RefSeq:NP_803425.1
UniGene:Mm.261027 ProteinModelPortal:Q8BKS9 STRING:Q8BKS9
PhosphoSite:Q8BKS9 PaxDb:Q8BKS9 PRIDE:Q8BKS9
Ensembl:ENSMUST00000076219 GeneID:52874 KEGG:mmu:52874
UCSC:uc008hby.1 CTD:52874 GeneTree:ENSGT00390000015757
HOGENOM:HOG000237322 InParanoid:Q8BKS9 NextBio:309667 Bgee:Q8BKS9
Genevestigator:Q8BKS9 GermOnline:ENSMUSG00000041360 Uniprot:Q8BKS9
Length = 647
Score = 440 (159.9 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 100/299 (33%), Positives = 172/299 (57%)
Query: 7 IRLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 65
++L+S+ LQK+ +GKI IA +H S+RV+Q ++Y ++ +R F+ELQ + L+ Y
Sbjct: 155 VKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKY 213
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE- 124
+ ++VKK L SK Q+A I + GHV +LRH S +VE+AY +++ +L E
Sbjct: 214 SRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEE 273
Query: 125 LYSTELQLFKNLVSIKESRLVDVISKLGLQKAS-VLRHMASVIQPILEK-GIIDHSIIHR 182
LY QL+K+ + +D + +L K ++ M ++ P+ +K +I HS++H+
Sbjct: 274 LYGNTFQLYKSA----DHPTLDKVLELQPAKLELIMDEMKQILTPMAQKEAVIKHSLVHK 329
Query: 183 VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXX 242
V +++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+R
Sbjct: 330 VFLDFFTYAPPKPRSELIEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKT 388
Query: 243 XXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
VA+ Q +VLL +DDTKL+ +III E+ S + +V DK GR+VLL L+ P
Sbjct: 389 YVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLMSP 447
Score = 49 (22.3 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 475 FASTLWKNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 523
FA TL + + WA ++++ L+S D +V K L+PLI
Sbjct: 576 FAKTLVERVGMKNLKSWASINRGAIILSSLLQSCDQEVVNKVKGGLKPLI 625
>ZFIN|ZDB-GENE-030131-9808 [details] [associations]
symbol:si:ch211-241o7.5 "si:ch211-241o7.5"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
ZFIN:ZDB-GENE-030131-9808 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000015757
EMBL:CR628386 IPI:IPI00799550 Ensembl:ENSDART00000127277
ArrayExpress:E9QJ83 Bgee:E9QJ83 Uniprot:E9QJ83
Length = 601
Score = 428 (155.7 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 99/297 (33%), Positives = 166/297 (55%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+L+ E +KGKI IA +H S+RVLQ +++ S +R VF+EL+ H + L+ + YA
Sbjct: 140 KLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYAR 199
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLV--EL 125
++VKK L SK+Q+ + A G V +LRH S VVE+AY A Q L++ EL
Sbjct: 200 NIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYN-DKAILSQRLMLTEEL 258
Query: 126 YSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHRVL 184
Y + K+ V ++++ + G + S+L M ++ P+ +K +I HS++H+V
Sbjct: 259 YGNTFTVLKSSVCPTLEKVLE--ANPG-KLESILDEMKQILTPMAQKEAVIKHSLVHKVF 315
Query: 185 MEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXX 244
+++ A ++I+ + +V M HT DG+++ M C+ HG+ K+R
Sbjct: 316 LDFFEHAPDKQRTEMIESIR-EAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYI 374
Query: 245 XXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
A + +VLL +DDTKL+ +III E+ S + E++ +K+G++VLL LL P
Sbjct: 375 AKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVLLYLLSP 431
Score = 56 (24.8 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 370 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLD 428
KKD +RR+ELL ++ + S+++ ENA ++ V+ ++ D LRP ++
Sbjct: 455 KKDVLIRRKELLEAA--SPSLLNHLCENAQSMVMDKSCCVVVSDILGSAVGD-LRPAME 510
>UNIPROTKB|F1SJG9 [details] [associations]
symbol:LOC100152831 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
OMA:RKDCDKE GeneTree:ENSGT00390000015757 EMBL:CU062572
Ensembl:ENSSSCT00000005761 Uniprot:F1SJG9
Length = 647
Score = 429 (156.1 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 98/299 (32%), Positives = 173/299 (57%)
Query: 7 IRLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 65
++L+S+ LQK+ +GKI IA +H S+RV+Q ++Y ++ +R FEEL+ + L+ Y
Sbjct: 155 VKLMSD-LQKLIQGKIKTIAFAHDSTRVIQCYIQYGTEEQRKQAFEELRGDLVELSKAKY 213
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE- 124
+ ++VKK L +K Q+A + + GHV +LRH S +VE+AY +++ +L E
Sbjct: 214 SRNIVKKFLMYGNKAQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEE 273
Query: 125 LYSTELQLFKNLVSIKESRLVDVI-SKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHR 182
LY QL+K+ ++++V KL L ++ M ++ P+ +K +I HS++H+
Sbjct: 274 LYGNTFQLYKSADCPTLDKVLEVQPEKLEL----IMDEMKQILTPMAQKEAVIKHSLVHK 329
Query: 183 VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXX 242
V +++ + A +++I+ + ++ + HT DG+++ M C+ HG+ K+R
Sbjct: 330 VFLDFFTHAPPKLRSEMIEAIR-EAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKT 388
Query: 243 XXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
VA+ Q +VLL +DDTKL+ +III E+ + + +V DK GR+VLL LL P
Sbjct: 389 YVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSP 447
Score = 50 (22.7 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 475 FASTLWKNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 523
FA TL ++ + WA ++++ L+SSD +V K L+ LI
Sbjct: 576 FAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSSDQEVANEVKAGLKSLI 625
>UNIPROTKB|E1C1R5 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005783 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 OMA:RKDCDKE
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00574038 Ensembl:ENSGALT00000016546
ArrayExpress:E1C1R5 Uniprot:E1C1R5
Length = 638
Score = 425 (154.7 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
Identities = 88/296 (29%), Positives = 170/296 (57%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+L++E + + GKI +A +H S+RV+Q ++Y + +R FEEL+ + L+ + Y+
Sbjct: 149 KLMNELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSKSKYSR 208
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-LY 126
++VKK L +K+Q+A I + GHV +LRH S VVE+AY +++ +L E LY
Sbjct: 209 NIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAILEQRNMLTEELY 268
Query: 127 STELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHRVLM 185
Q++K + ++++ + ++ ++L M ++ P+ +K +I HS++H+V +
Sbjct: 269 GNTFQVYKTPIVPTLDKVLEAQPE---KREAILDEMKQILTPMAQKEAVIKHSLVHKVFL 325
Query: 186 EYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXX 245
++ + A +++I+ + ++ + HT DG+++ M C+ HG+ K+R
Sbjct: 326 DFFTHALPKQRSEMIEAIR-EAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIE 384
Query: 246 XVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
+A + +VLL +DDTKL+ ++II EL + + L+ +K+G++VLL LL P
Sbjct: 385 KIATGEFSHLVLLAAFDCIDDTKLVKQLIITELNASLPSLISNKHGKKVLLYLLSP 440
Score = 39 (18.8 bits), Expect = 9.4e-42, Sum P(2) = 9.4e-42
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 491 WAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 523
WA+ V+ L S+D KV K L+ ++
Sbjct: 585 WAEVNRGAIVLCCLLRSTDQKVTNAVKKGLKKIV 618
>DICTYBASE|DDB_G0288551 [details] [associations]
symbol:DDB_G0288551 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
dictyBase:DDB_G0288551 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099 KO:K14844
EMBL:AAFI02000116 RefSeq:XP_636672.1 ProteinModelPortal:Q54IS5
STRING:Q54IS5 EnsemblProtists:DDB0238675 GeneID:8626685
KEGG:ddi:DDB_G0288551 OMA:LLRNDHI ProtClustDB:CLSZ2429870
Uniprot:Q54IS5
Length = 679
Score = 367 (134.2 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 86/298 (28%), Positives = 161/298 (54%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
LI + QK+KG + + H +SRV+QT +KY ++A+R+ VF+EL+ L+++ Y
Sbjct: 133 LIEQLTQKLKGNVLNVIVKHDASRVVQTLLKYGNEAQREIVFKELKDQELTISKTQYGRF 192
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAY-QLGNATQKQELLVELYS 127
L+ K+L +++Q I +G S++ H S VVE+ + ++ + QK ++ E Y
Sbjct: 193 LILKLLKYGTEEQRNTIIKQFYGKFVSMISHKESSSVVEYIFSEIASKLQKTHIIEEFYG 252
Query: 128 TELQLFKNLVSIKESRLVDVISKLGLQKAS-VLRHMASVIQPILE-KG--IIDHSIIHRV 183
E +LFK ++ R +D I + QK ++ +++S + IL KG ++ +II +
Sbjct: 253 PEYRLFKT----EQPRTLDSIVESSPQKKEPIITYLSSQLTKILSSKGERLVQFTIIQTL 308
Query: 184 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXX 243
L+E+ A + D+ + L G LL+ MIH+++GS++ + + + K R
Sbjct: 309 LIEFFKHASPDNCVDMSETL-GELLLPMIHSKEGSQVAYYVISYATPKTRKSIVKSLKDF 367
Query: 244 XXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
+A ++ G + L+ ++ + DDT++I K + EL ++ E + K G +L LL P
Sbjct: 368 IPKIASEEYGFLALVRLLDVTDDTQMIIKSVFNELIPVLPECSITKQGSLWILHLLAP 425
Score = 75 (31.5 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 367 EGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKG--GSDDILR 424
E KKD RR+ELL + ++ +I++C + +LL S +G +VL + K G+ IL
Sbjct: 452 EISKKDRDQRRKELL--NWISPKLIELCSNHTQDLLSSQWGTKVLNQTLKNADGNKIILM 509
Query: 425 PTLDDKL 431
+ D L
Sbjct: 510 KRILDLL 516
>POMBASE|SPCP1E11.11 [details] [associations]
symbol:puf6 "Puf family RNA-binding protein Puf6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISO] [GO:2000766 "negative regulation of cytoplasmic
translation" evidence=ISO] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPCP1E11.11 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:2000766 eggNOG:NOG273657 KO:K14844 PIR:T41690
RefSeq:NP_588564.1 ProteinModelPortal:Q9UU76 STRING:Q9UU76
PRIDE:Q9UU76 EnsemblFungi:SPCP1E11.11.1 GeneID:2538833
KEGG:spo:SPCP1E11.11 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF NextBio:20800015 Uniprot:Q9UU76
Length = 642
Score = 357 (130.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 81/294 (27%), Positives = 155/294 (52%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+I+E ++ + ++ H SRV+QTCVK+ S+ +R+ + EL ++ L + Y +
Sbjct: 154 IIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKY 213
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAY-QLGNATQKQELLVELYS 127
L K+ + K + ++G+V ++RH + VVE A+ + N Q++ L+ E Y
Sbjct: 214 LAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYG 273
Query: 128 TELQLFKNLVS-IK-ESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLM 185
E Q+FK+ I + L+D K + S+++++ I+ + KG I +++HR ++
Sbjct: 274 PEFQVFKDRTQDIHIDKLLIDHPEK----RPSIMQNLWKTIEGSIAKGSIGFTMVHRAML 329
Query: 186 EYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXX 245
E+++ AD + A +++ L+ L+ +HTRDGS++ M +AK+R
Sbjct: 330 EFINHADSNEAKELLN-LTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRPYLI 388
Query: 246 XVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLL 299
A D G +V++ + DDT + K++ E + + +L DK RR+LL +L
Sbjct: 389 ETAKDSYGHLVVVAALDCTDDTIMTGKLLQAEFEGELLKLSADKFARRILLYVL 442
Score = 76 (31.8 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 43/157 (27%), Positives = 67/157 (42%)
Query: 366 AEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEV---AKGGSDDI 422
A+ KKDP VRR EL + G +I + + AG+++ + +VL + A ++
Sbjct: 467 AKTSKKDPIVRRNELKATIG--PLLISLISKAAGDMIAESLASQVLVDALLYAPCEKEEA 524
Query: 423 LRPTLDDKLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVM--DCPKFASTLW 480
+ TL K + +++N H S +++V D K AS L
Sbjct: 525 VDATL--KAFDGNPEQDNHLIHQIHCSRALKTLVQNGHWSGAEKQVVKAEDDLKVASKLI 582
Query: 481 KNALKGKSEFWAQGHSCKVVTAFLES-SDFKVRELAK 516
K E WA G VV A LE+ SD + +E K
Sbjct: 583 VIIKKYLVE-WASGDGAFVVVAVLEALSDSEKQEFLK 618
>WB|WBGene00014165 [details] [associations]
symbol:puf-12 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0018991 "oviposition"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0018991 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 EMBL:Z48544 PIR:T28120
RefSeq:NP_496178.1 ProteinModelPortal:Q09622 SMR:Q09622
STRING:Q09622 PaxDb:Q09622 EnsemblMetazoa:ZK945.3.1
EnsemblMetazoa:ZK945.3.2 GeneID:174572 KEGG:cel:CELE_ZK945.3
CTD:174572 WormBase:ZK945.3 HOGENOM:HOG000020011 InParanoid:Q09622
OMA:TSRVIEC NextBio:884608 Uniprot:Q09622
Length = 766
Score = 365 (133.5 bits), Expect = 1.3e-32, P = 1.3e-32
Identities = 87/297 (29%), Positives = 154/297 (51%)
Query: 10 ISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHL 69
+ E +KG ++ +H +SRV++ V + + +F EL P + ++ N Y+
Sbjct: 271 VHELYGLVKGHAAKLIYAHDTSRVIECLVATEREGIINNLFNELTPEIVRMSKNVYSKFF 330
Query: 70 VKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQ-LGNATQKQELLVELYST 128
VKKML N +K+Q I+A GH +LLR + V+E+AY NA Q+ ++ E Y
Sbjct: 331 VKKMLKNGTKEQRDIIINAFRGHAPTLLRIKHAAEVLEYAYNDFANAHQRYNIITEFYGK 390
Query: 129 ELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYL 188
E LF+ +I+ L +++++ +K +L+H+ VI + EK + SI+H++++++
Sbjct: 391 EFILFRE-DNIRS--LTEILAEKPEKKVVILKHLDEVIGAVNEKETLRLSILHKLMLDFF 447
Query: 189 SMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVA 248
D+ +++ L + IHT DG+K+ + + KER A
Sbjct: 448 DNCDEEKKINLLDSLKDKI-PEFIHTPDGAKLAIKLIWFAPVKERKLIVKNFKDLSVKAA 506
Query: 249 HDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSR 305
+ G VLL + VDDT L+ K+I+ EL + +K+L+ D G +V+ L+HP R
Sbjct: 507 MEHYGHRVLLALFDTVDDTVLLNKVIVSELANEMKKLIEDDWGEKVIHYLVHPRDGR 563
>CGD|CAL0005913 [details] [associations]
symbol:orf19.3547 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 CGD:CAL0005913 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:AACQ01000094
EMBL:AACQ01000093 eggNOG:NOG273657 KO:K14844 HOGENOM:HOG000246618
RefSeq:XP_714906.1 RefSeq:XP_714969.1 ProteinModelPortal:Q59ZH2
STRING:Q59ZH2 GeneID:3643365 GeneID:3643461 KEGG:cal:CaO19.11031
KEGG:cal:CaO19.3547 Uniprot:Q59ZH2
Length = 667
Score = 348 (127.6 bits), Expect = 6.2e-32, Sum P(2) = 6.2e-32
Identities = 87/301 (28%), Positives = 155/301 (51%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+L E + I ++ H +SRV+QT VKY S+ RD + L+ F LA + Y
Sbjct: 153 KLCDEVWELSHDVINDLVMKHDASRVVQTLVKYSSKERRDIIVNSLKGSFYQLATSAYGK 212
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQL-GNATQKQELLVELY 126
+L+ K+L SK+ A + LHG + L+RH G+ VVE Y L + Q+Q+++ E +
Sbjct: 213 YLLIKLLHYGSKESRAIIVDELHGKLRKLMRHKEGAYVVEDLYVLYSTSEQRQQMIREFW 272
Query: 127 STELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLME 186
++ +F++ S K ++D+ + +K ++ ++ I+ +EKG I+H + E
Sbjct: 273 GSQYAVFRD--SGKGKTVLDITRESAEKKQLIMSNLYGTIKASVEKGSTGFQILHAAMKE 330
Query: 187 YLSM------ADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX 240
Y+++ A+ S+ D I L G ++HT++GS + + +AKER
Sbjct: 331 YVTVLKDDIDANDSAIRDFIDLL-GEQFAELVHTQEGSDVACNLIALANAKERKVIIRGL 389
Query: 241 XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL--QSIIKELVMDKNGRRVLLQL 298
+ ++ G++VL+ + VDDT LI+K E+ ++ +L+ DK RR +L L
Sbjct: 390 KTHTNELIKNEYGNIVLITLFMTVDDTVLISKSFGAEIFTSELVPQLIQDKFSRRPILYL 449
Query: 299 L 299
L
Sbjct: 450 L 450
Score = 58 (25.5 bits), Expect = 6.2e-32, Sum P(2) = 6.2e-32
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 361 ENLPLAEGGKKDPRVRRQELLVSS--GLAESMIDVCIENAGELLRSNFGKEVLYEVAKGG 418
E L + KKD R+ ELL S + ++++D E+ +LL+ N +V+ E+
Sbjct: 470 EELAYKKTSKKDKEQRKSELLERSISPIYKALLDE--ESIVKLLQVNIAAQVITELILTS 527
Query: 419 S--DDI---LRPTLDD 429
+ +D+ LRP L D
Sbjct: 528 TNVEDVNKNLRPQLAD 543
>SGD|S000002904 [details] [associations]
symbol:PUF6 "Pumilio-homology domain protein that binds the
3' UTR of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005934 "cellular bud tip" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0015934 "large ribosomal subunit"
evidence=IDA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IMP] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IDA] InterPro:IPR001313 InterPro:IPR012959
InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002904 SUPFAM:SSF48371 GO:GO:0005730
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0005934 GO:GO:0006810
EMBL:BK006938 EMBL:U33057 GO:GO:0003730 GO:GO:0042273 GO:GO:0000900
GO:GO:0015934 eggNOG:NOG273657 KO:K14844
GeneTree:ENSGT00390000015757 HOGENOM:HOG000246618 OMA:FAELVHT
OrthoDB:EOG41ZJKF PIR:S69554 RefSeq:NP_010784.1
ProteinModelPortal:Q04373 SMR:Q04373 DIP:DIP-6579N IntAct:Q04373
MINT:MINT-637951 STRING:Q04373 PaxDb:Q04373 PeptideAtlas:Q04373
EnsemblFungi:YDR496C GeneID:852107 KEGG:sce:YDR496C CYGD:YDR496c
NextBio:970463 Genevestigator:Q04373 GermOnline:YDR496C
Uniprot:Q04373
Length = 656
Score = 343 (125.8 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 79/294 (26%), Positives = 154/294 (52%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+L +E + K I ++ H +SR++QT VKY S+ R+ + + L+ F LA + Y
Sbjct: 148 KLSNEIWELSKDCISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGK 207
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQL-GNATQKQELLVELY 126
+L+ K+L S+ I+ LHG + L+RH G+ VVE + L Q+Q+++ E +
Sbjct: 208 YLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFW 267
Query: 127 STELQLFKNLVSIKESRLVDVISKLGLQKASVL-RHMASVIQPILEKGIIDHSIIHRVLM 185
+E +F+ + ++ + + ++K +++ R++ I +EKG I+H +
Sbjct: 268 GSEYAVFRET---HKDLTIEKVCESSIEKRNIIARNLIGTITASVEKGSTGFQILHAAMR 324
Query: 186 EYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXX 245
EY+ +A++ +++I+ L ++HT +GS + V +AKER
Sbjct: 325 EYVKIANEKEISEMIELLHEQF-AELVHTPEGSDVACTLVARANAKERKLILKALKNHAE 383
Query: 246 XVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLL 299
+ ++ G++V + I++ VDDT L+ K ++ ++E ++DK GRR L +L
Sbjct: 384 KLIKNEYGNIVFITILNCVDDTVLVFKTFSPTVKEHLQEFIIDKFGRRPWLYIL 437
Score = 61 (26.5 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 24/101 (23%), Positives = 40/101 (39%)
Query: 370 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLDD 429
KKDP RR ELL S A + ++ +L N G + + EV +D L L++
Sbjct: 465 KKDPLQRRHELL--SKFAPMFLSTISKDYSSILTENLGCQFIAEVL---INDELYAQLNE 519
Query: 430 K-LNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLV 469
K + + H + S+R ++ L+
Sbjct: 520 KDQEKYQQVLNNILTTFKGDITEEEHPIHRAFSTRLLKALI 560
>ASPGD|ASPL0000058629 [details] [associations]
symbol:AN10173 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308
GO:GO:0003723 OMA:FAELVHT EnsemblFungi:CADANIAT00001389
Uniprot:C8VSQ6
Length = 709
Score = 287 (106.1 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 78/291 (26%), Positives = 152/291 (52%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+LI+E + G++ + H S RV+QT +KY + +R + EL+ ++ LA + YA
Sbjct: 183 KLIAELFDIITGRVKDFVFKHDSVRVIQTALKYANVEQRKQIAHELKGSYVELAQSKYAK 242
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQE--LLVEL 125
L+ K++ + + I+ +G V L+RH GS +++ Y+ ATQ+Q+ LL E
Sbjct: 243 FLIGKLIVHGDSEIRDLIIAEFYGKVKRLIRHPEGSWILDDIYRTV-ATQEQQANLLREW 301
Query: 126 YSTELQLFKNLVSIKESRLVDVISKL----GLQKASVLRHMASVIQPILEKGIIDHSIIH 181
Y E +F++ + K+ + +SK+ +++ ++ + +I +++K +++H
Sbjct: 302 YGAEFAIFRDN-NTKDKKPTADLSKILEEDPAKRSPIMHFLLELINQLIQKKTTGFTMLH 360
Query: 182 RVLMEY-LSMADKSS-AADIIQQLSGP----LLVRMIHTRDGSKIGMLCVKHGSAKERXX 235
+++Y L++ +S A + I+ + G L+ + T+ G+ + L + + +AK+R
Sbjct: 361 DAMLQYFLNVKPGTSDATEFIELIKGDEEGDLVKNLAFTKSGAHLMCLALAYSTAKDRKH 420
Query: 236 XXXXXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL--QSIIKE 284
+A D G +VLL ++DDTKL AK+I EL Q+I E
Sbjct: 421 LTRFYKDTIKMMAGDLHGHLVLLAAYEVIDDTKLTAKLIFPELLNQNIADE 471
Score = 103 (41.3 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 40/153 (26%), Positives = 67/153 (43%)
Query: 367 EGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSD-DILRP 425
E KKDP VRR EL+ ++ + +++D+ A LL ++FG + L EV D D +
Sbjct: 528 ETSKKDPAVRRMELIKAA--SPTLLDLITARAESLLTTSFGCQFLSEVLFDADDSDGKKH 585
Query: 426 TLDDKLNTLHETIXXXXXXXXXXXXXXXHVLENFHSSRTIRKLVMDCPKFA-STLWKNAL 484
T + T ++ +++ + T +K+ P L+ +
Sbjct: 586 TALSAVATAAKS-RSDTKDSPFVGRMLKSLVQGGRFNVTEKKVEKVSPPLGFDALFYEQI 644
Query: 485 KGKSEFWAQGHSCKVVTAFLESSDF-KVRELAK 516
+ WA G + V+ A +ES DF K EL K
Sbjct: 645 SDEIMAWATGSNVYVIVALVESEDFEKKNELIK 677
>UNIPROTKB|G4MRT4 [details] [associations]
symbol:MGG_13803 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50303 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 EMBL:CM001231 KO:K14844
RefSeq:XP_003710911.1 ProteinModelPortal:G4MRT4
EnsemblFungi:MGG_13803T0 GeneID:5049020 KEGG:mgr:MGG_13803
Uniprot:G4MRT4
Length = 724
Score = 270 (100.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 85/359 (23%), Positives = 167/359 (46%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
L+ E + G++ + H + R +QT +KY + A+R + +EL+ F LA++ YA
Sbjct: 155 LVDELFTIVTGRVRDFVLKHDAVRAVQTAIKYATMAQRREIAQELKGTFAQLAESRYAKF 214
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQE--LLVELY 126
L+ K+L + + + +G V L+ H S +++ Y+ G AT++Q+ LL E Y
Sbjct: 215 LIGKLLGHQDDEVRDLIVPEFYGKVKKLINHPEASWILDDIYR-GVATKEQKDILLREWY 273
Query: 127 STELQLFK--NLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVL 184
TE LFK N ++ L ++ ++ +L+++ +I +++K + +++H +
Sbjct: 274 GTEFALFKPENGEAVTAD-LPKILKNEPSKRGPILKYLFGMINNLIQKQMTGFTMLHDAM 332
Query: 185 MEY-LSMA-DKSSAADIIQQL----SGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXX 238
++Y L + D + ++ + +G LL + TR G+++ L + +G AK+R
Sbjct: 333 LQYFLCLPPDTEEHKEFVEIIKADDNGDLLKNLAFTRSGARLVCLLLAYGGAKDRKQILK 392
Query: 239 XXXXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ D+ V+L ++DDT L +K I+ E+ + DK V +
Sbjct: 393 TYKDTFELMCGDRNAHAVILTAFDVIDDTVLTSKSILPEILGKSE----DKEAENVFFCV 448
Query: 299 LHPNCS---RYXXXXXXXXXXXXXXXXCAKEGSEVNSEAKN-NESSKEMADQEVVAVQA 353
+PN RY EV++ KN ++ E+ +E+VA +
Sbjct: 449 NNPNARIVIRYPFEGTSKSLFPPSHWSDLGLLKEVHAIRKNTSKKDPEVRRKEIVAAMS 507
Score = 91 (37.1 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 47/188 (25%), Positives = 84/188 (44%)
Query: 370 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEV---AKGGSDDILRP- 425
KKDP VRR+E++ + ++ +++ V +A +++ ++FG +++ EV A G + L
Sbjct: 492 KKDPEVRRKEIVAA--MSPALLRVIASSAKDIMSTSFGCQMITEVLLSAVGDKTEALNAV 549
Query: 426 --TLDDKLNTLHETIXXXXX-------XXXXXXXXXXHVLENFHSSRTIRKL-VMDCP-K 474
T + N E ++ H + K+ D P
Sbjct: 550 AATAEGDPNQEPEENPDSLAPPRPHPARDPFAARMYKTLVSGGHYDKASGKVKAADPPLN 609
Query: 475 FASTLWKNALKGKSEFWAQGHSCKVVTAFLESSDFKVR--ELAKT--ELQPLIDSGSLKI 530
FA+TL+ + +K WA G V LE+ DF+ R EL KT + + L++ S++
Sbjct: 610 FANTLY-DVIKSHIVAWATGPGSFVPVGLLEAEDFEPRKAELVKTLKKNKKLLEKASIE- 667
Query: 531 PEAKQLPK 538
A+Q K
Sbjct: 668 ETAEQKAK 675
Score = 58 (25.5 bits), Expect = 8.3e-22, Sum P(2) = 8.3e-22
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 325 KEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAENLPLAEGGKKDPRV-RRQELLVS 383
K+ ++ +A E++++ A +E +A E + A G+KD R ++ELLV
Sbjct: 655 KKNKKLLEKASIEETAEQKAKREALAAVDSEEGQEVDKAA-ARKGRKDKRKGAKKELLVG 713
Query: 384 SGLAESMID 392
+ A+ +++
Sbjct: 714 NAGAKILLE 722
>FB|FBgn0015527 [details] [associations]
symbol:pen "penguin" species:7227 "Drosophila melanogaster"
[GO:0007475 "apposition of dorsal and ventral imaginal disc-derived
wing surfaces" evidence=IMP] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AE014298
GO:GO:0003723 GO:GO:0007475 EMBL:AF017777 ChiTaRS:Pen
eggNOG:NOG273657 KO:K14844 GeneTree:ENSGT00390000015757
EMBL:AF132165 PIR:T08427 RefSeq:NP_523429.1 UniGene:Dm.235
ProteinModelPortal:O61345 SMR:O61345 DIP:DIP-21277N
MINT:MINT-752576 STRING:O61345 PaxDb:O61345 PRIDE:O61345
EnsemblMetazoa:FBtr0077223 GeneID:33112 KEGG:dme:Dmel_CG1685
UCSC:CG1685-RA CTD:33112 FlyBase:FBgn0015527 HOGENOM:HOG000245365
InParanoid:O61345 OMA:SNSHIGL OrthoDB:EOG4PRR64 PhylomeDB:O61345
GenomeRNAi:33112 NextBio:781967 Bgee:O61345 GermOnline:CG1685
Uniprot:O61345
Length = 737
Score = 306 (112.8 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 72/283 (25%), Positives = 138/283 (48%)
Query: 21 IPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKK 80
I ++ +H ++RV+Q+ +KY S A R + E+L P + + + YA V++ML +
Sbjct: 172 ISKVVKAHDTARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPA 231
Query: 81 QLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIK 140
A + +L+GH+ L H +GS +++ YQ Q+ + E Y L++
Sbjct: 232 TKAKLVDSLYGHIVRLAGHSIGSGLLDSMYQSATPNQRIYMRQEFYG---DLYRKAKDSN 288
Query: 141 ESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAA--D 198
L D + KAS+L + + + + K ++D +++H V++EYL D+ +
Sbjct: 289 VKTLSDTYKEATNMKASILGSVKANLDHVANKQLVDSALVHAVMLEYLRACDEDEEKLEE 348
Query: 199 IIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLL 258
+ + L+ M+ T++GS+ ++C + K R +A+ + G + L+
Sbjct: 349 TVTAFAA-LVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHEHGHVFLI 407
Query: 259 CIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
+++ +DDTK K I L +K L+ GRRV+ L+ P
Sbjct: 408 SLLNALDDTKATKKAIYDHLHGDLKALMSSPYGRRVIQWLVAP 450
Score = 45 (20.9 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 369 GKKDPRVRRQELL--VSSGLAESMID 392
GKK+ +RR+E+L + + +A+S+ +
Sbjct: 471 GKKEKELRRKEILEQIEAPIAQSIAE 496
>UNIPROTKB|F1NWW8 [details] [associations]
symbol:KIAA0020 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR012959 InterPro:IPR016024
Pfam:PF08144 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000015757 EMBL:AADN02068459 EMBL:AADN02068460
EMBL:AADN02068461 IPI:IPI00681111 Ensembl:ENSGALT00000034677
ArrayExpress:F1NWW8 Uniprot:F1NWW8
Length = 613
Score = 222 (83.2 bits), Expect = 6.9e-15, Sum P(3) = 6.9e-15
Identities = 52/183 (28%), Positives = 102/183 (55%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+L++E + + GKI +A +H S+RV+Q ++Y + +R FEEL+ + L+ + Y+
Sbjct: 149 KLMNELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSKSKYSR 208
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-LY 126
++VKK L +K+Q+A I + GHV +LRH S VVE+AY +++ +L E LY
Sbjct: 209 NIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAILEQRNMLTEELY 268
Query: 127 STELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLME 186
Q++K + ++++ + ++ ++L M ++ P+ + + +I V+
Sbjct: 269 GNTFQVYKTPIVPTLDKVLEAQPE---KREAILDEMKQILTPMAQNAEMIEAIREAVI-- 323
Query: 187 YLS 189
YL+
Sbjct: 324 YLA 326
Score = 175 (66.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 62/280 (22%), Positives = 123/280 (43%)
Query: 39 KYCSQAERDAVFEELQPHFLSLADNTYAVH----LVKKMLDNASKKQLAGFISALHGHVA 94
K C + +R+ + ELQ N H +++ + + KQ L +
Sbjct: 140 KKCDKEKREKLMNELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLV 199
Query: 95 SLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVI--SKLG 152
L + +V+ G KQ++ + S + + K L + S +V+ K
Sbjct: 200 ELSKSKYSRNIVKKFLMYGT---KQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAI 256
Query: 153 LQKASVLRH---------MASVIQPILEKGIIDHSIIHRVLMEYLS--MADKSSAADIIQ 201
L++ ++L + I P L+K + +++ + + + A++I+
Sbjct: 257 LEQRNMLTEELYGNTFQVYKTPIVPTLDKVLEAQPEKREAILDEMKQILTPMAQNAEMIE 316
Query: 202 QLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVAHDQCGSMVLLCIV 261
+ ++ + HT DG+++ M C+ HG+ K+R +A + +VLL
Sbjct: 317 AIR-EAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIEKIATGEFSHLVLLAAF 375
Query: 262 SIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
+DDTKL+ ++II EL + + L+ +K+G++VLL LL P
Sbjct: 376 DCIDDTKLVKQLIITELNASLPSLISNKHGKKVLLYLLSP 415
Score = 41 (19.5 bits), Expect = 6.9e-15, Sum P(3) = 6.9e-15
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 270 IAKIIIRELQSIIKELVMDK 289
I+ ++ LQ I+E+VMDK
Sbjct: 453 ISPPLLEYLQEHIQEIVMDK 472
Score = 39 (18.8 bits), Expect = 6.9e-15, Sum P(3) = 6.9e-15
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 491 WAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLI 523
WA+ V+ L S+D KV K L+ ++
Sbjct: 560 WAEVNRGAIVLCCLLRSTDQKVTNAVKKGLKKIV 593
>UNIPROTKB|I3LI55 [details] [associations]
symbol:I3LI55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR012959 InterPro:IPR016024 Pfam:PF08144 PROSITE:PS50302
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000015757
Ensembl:ENSSSCT00000025417 Uniprot:I3LI55
Length = 573
Score = 210 (79.0 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 78/300 (26%), Positives = 141/300 (47%)
Query: 7 IRLISEALQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTY 65
++L+S+ LQK+ +GKI ++ ++ R ++ +Y S + L+ FLS N Y
Sbjct: 155 VKLMSD-LQKLIQGKIKTVSSTYCMMRSIKYD-RYGSCKNNKTILL-LKDDFLSFIKNIY 211
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLG-NATQKQELLVE 124
+K N K L + V+ R + ++ N K
Sbjct: 212 GKKTKRKKKKNLWKSLLKEILLKFMSKVSHRSRFTEAGLDFQNRENDHLNIFYKNRHTFF 271
Query: 125 LYSTELQLFKNLVSI-KESRLVDVISKLGLQKASVLRHMASVIQ-PILEKGIIDHSIIHR 182
L L ++ L +I +S ++ + K+ L+ L H +I+ P +K I HS + +
Sbjct: 272 LPGGSLCIYLILPNIIMKSYMLKIKIKIKLK----LSHNKLMIEFPPQKKIIKKHSHLLK 327
Query: 183 VLMEYLS-MADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXX 241
++Y + + + ++I+ + ++ + HT DG+++ M C+ HG+ K+R
Sbjct: 328 NHLKYSTHYVSRKKSDEMIEAIR-EAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMK 386
Query: 242 XXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
VA+ Q +VLL +DDTKL+ +III E+ + + +V DK GR+VLL LL P
Sbjct: 387 TYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSP 446
Score = 45 (20.9 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 370 KKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLD 428
KKD +RR+ELL S ++ +++ +A E++ ++ ++ D+ +P ++
Sbjct: 470 KKDTEIRRRELLES--ISPALLSYLQGHAQEVMLDKSACVLVSDILGAAIGDV-QPAMN 525
>UNIPROTKB|D4A5Q5 [details] [associations]
symbol:D4A5Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50303
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00568526 Ensembl:ENSRNOT00000030427 OMA:ASAIVEC
Uniprot:D4A5Q5
Length = 233
Score = 178 (67.7 bits), Expect = 7.7e-13, P = 7.7e-13
Identities = 71/250 (28%), Positives = 118/250 (47%)
Query: 14 LQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKK 72
LQK+ +G+I IA +H S LQ + R FEELQ L L+ Y+ ++ KK
Sbjct: 4 LQKLIQGRIKTIAFAHDSQ--LQR------EELRKQAFEELQGD-LELSKAKYSRNIAKK 54
Query: 73 MLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-LYSTELQ 131
L SK Q+ I + HV +L+H S +VE AY +++ +L E LY +
Sbjct: 55 FLMYGSKPQVVEIIRSFKDHVRKMLQHSEASAIVECAYNDKAILEQRNMLTEELYGNKSA 114
Query: 132 LFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKG-IIDHSIIHRVLMEYLS- 189
+L + E + KL L +L M ++ P+ KG +I HS++H+V ++ L+
Sbjct: 115 DHPSLEMVLELQP----GKLEL----ILDEMKQILTPMARKGAVIKHSLVHKVFLDCLTH 166
Query: 190 MADKSSAA-DIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVA 248
+ K S + I++ V + T G+++ M C++H + +R VA
Sbjct: 167 IPPKQSELNETIREA-----VVYLATHYGARVAMHCLRHDTP-DRKMIMKTMKTYMETVA 220
Query: 249 HDQCGSMVLL 258
+ +VLL
Sbjct: 221 NGHYSHLVLL 230
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 50/193 (25%), Positives = 91/193 (47%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L + G++ E + SR +Q +++CS E+ +VF E+ P L + + ++++K
Sbjct: 626 LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKF 685
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 133
+++ + Q + L G + SL M G V++ A ++ + QK EL+ EL L+
Sbjct: 686 IEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCV 745
Query: 134 KN----------LVSIKESRLVDVISKLGLQKASVLRHM--ASVIQPILEKGIID---HS 178
++ + S+ R+ VI+ Q A++ H VIQ ILE D H
Sbjct: 746 RDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHC 805
Query: 179 IIHRVLMEYLSMA 191
II +L ++A
Sbjct: 806 IIDEILESAFALA 818
Score = 43 (20.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 390 MIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRPTLD 428
+ID +E+A L +G V V + G D R ++
Sbjct: 806 IIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIE 844
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 134 (52.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 68/294 (23%), Positives = 134/294 (45%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEEL-QPHFLSLADNTYAVHLVKK 72
L + G + + SR +Q + ++ ER+AVF+E+ L L + + ++V+K
Sbjct: 394 LSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQK 453
Query: 73 MLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQL 132
+ ++KQ +S + GHV SL M G VV+ A + + + +L+ EL L
Sbjct: 454 YFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDC 513
Query: 133 F--KNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSM 190
+N + + + ++ I LQ +LR + I +L +I R + E+
Sbjct: 514 VCDQNGNHVIQ-KAIECIDTGHLQ--FILRALRPQIH-VLSAHPYGCRVIQRAI-EHCHS 568
Query: 191 ADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXXXXXXXXVA-H 249
K II++L P ++++ + G+ + ++ GS ++ ++ H
Sbjct: 569 ERKL----IIEELL-PHILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCH 623
Query: 250 DQCGSMVLLCI--VSIVDDTKLIAKIIIRELQ--SIIKELVMDKNGRRVLLQLL 299
++V CI +S VD +++ KII + + SI+ ++ DK V+ +LL
Sbjct: 624 KFASNVVERCISYISDVDRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLL 677
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 53/215 (24%), Positives = 93/215 (43%)
Query: 19 GKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNAS 78
G I E + SR +Q ++ + AER VF E+ L + + ++++K + S
Sbjct: 2 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGS 61
Query: 79 KKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVS 138
+Q + GHV SL M G V++ A + Q+++ E+ EL L
Sbjct: 62 LEQKLALAERIRGHVLSLALQMYGCRVIQKALEF--IPSDQQVINEMVR-ELDGHV-LKC 117
Query: 139 IKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAAD 198
+K+ V+ K ++ + + +I + + +I VL E+ DKS
Sbjct: 118 VKDQNGNHVVQKC-IECVQP-QSLQFIIDAFKGQDQYGNYVIQHVL-EHGRPEDKSK--- 171
Query: 199 IIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKER 233
I+ ++ G +LV H + S + CV H S ER
Sbjct: 172 IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTER 205
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 63/299 (21%), Positives = 128/299 (42%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+ +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 430 VFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCR 485
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYST 128
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L + +
Sbjct: 486 VIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFIIDAF 542
Query: 129 ELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRVLME 186
+ Q+F R++ I + L Q +L + + +++ ++ I H ++E
Sbjct: 543 KGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH--VLE 600
Query: 187 YLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX------ 240
+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 601 HGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTMNDG 656
Query: 241 -XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L +L
Sbjct: 657 PHSALYTMMKDQYANYVVQKMIDVAEPAQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 713
Score = 121 (47.7 bits), Expect = 0.00063, P = 0.00063
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L+++ G I E + SR +Q ++ + AER VF E+ L + + ++++K
Sbjct: 395 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 454
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 133
+ S +Q + GHV SL M G V++ A + + Q+ E++ EL L+
Sbjct: 455 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCV 514
Query: 134 KN 135
K+
Sbjct: 515 KD 516
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00050
Identities = 25/126 (19%), Positives = 63/126 (50%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAER-DAVFEELQPHFLSLADNTYA 66
++ISE ++++ G + + + V+Q C++ C Q + + + + L+ + Y
Sbjct: 666 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYG 724
Query: 67 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY 126
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 725 CRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 784
Query: 127 STELQL 132
L L
Sbjct: 785 GKVLAL 790
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 123 (48.4 bits), Expect = 0.00052, P = 0.00052
Identities = 63/299 (21%), Positives = 128/299 (42%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+ +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 639 VFNEILQAAYQLMVDVFGNYV----IQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCR 694
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYST 128
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L + +
Sbjct: 695 VIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFIIDAF 751
Query: 129 ELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRVLME 186
+ Q+F R++ I + L Q +L + + +++ ++ I H ++E
Sbjct: 752 KGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH--VLE 809
Query: 187 YLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX------ 240
+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 810 HGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTMNDG 865
Query: 241 -XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L +L
Sbjct: 866 PHSALYTMMKDQYANYVVQKMIDVAEPGQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 922
Score = 122 (48.0 bits), Expect = 0.00067, P = 0.00067
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L+++ G I E + SR +Q ++ + AER VF E+ L + + ++++K
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 133
+ S +Q + GHV SL M G V++ A + + Q+ E++ EL L+
Sbjct: 664 FEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCV 723
Query: 134 KN 135
K+
Sbjct: 724 KD 725
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 123 (48.4 bits), Expect = 0.00061, P = 0.00060
Identities = 25/126 (19%), Positives = 63/126 (50%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAER-DAVFEELQPHFLSLADNTYA 66
++ISE ++++ G + + + V+Q C++ C Q + + + + L+ + Y
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYG 886
Query: 67 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY 126
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 887 CRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 127 STELQL 132
L L
Sbjct: 947 GKVLAL 952
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 123 (48.4 bits), Expect = 0.00061, P = 0.00060
Identities = 25/126 (19%), Positives = 63/126 (50%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAER-DAVFEELQPHFLSLADNTYA 66
++ISE ++++ G + + + V+Q C++ C Q + + + + L+ + Y
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFVLSTHPYG 886
Query: 67 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY 126
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 887 CRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIR 946
Query: 127 STELQL 132
L L
Sbjct: 947 GKVLAL 952
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 121 (47.7 bits), Expect = 0.00068, P = 0.00068
Identities = 27/115 (23%), Positives = 59/115 (51%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
LI + G I ++A RV+Q +++C++ + + +EL +SL + Y +
Sbjct: 596 LIQFIIDSFHGHIYQLATHPYGCRVIQRILEHCAEKQVAPILDELMRCAVSLVQDQYGNY 655
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLV 123
+++ +L+N + + + + L G + +L +H S V+E Q G T ++ L++
Sbjct: 656 VIQHVLENGTPRDKSAIVCKLQGQIYNLSQHKFASNVIEKCVQHG-CTAERILII 709
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 123 (48.4 bits), Expect = 0.00069, P = 0.00069
Identities = 63/299 (21%), Positives = 128/299 (42%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+ +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 881 VFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCR 936
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYST 128
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L + +
Sbjct: 937 VIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFIIDAF 993
Query: 129 ELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRVLME 186
+ Q+F R++ I + L Q +L + + +++ ++ I H ++E
Sbjct: 994 KGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH--VLE 1051
Query: 187 YLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX------ 240
+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 1052 HGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTMNDG 1107
Query: 241 -XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L +L
Sbjct: 1108 PHSALYTMMKDQYANYVVQKMIDVAEPAQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 1164
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 121 (47.7 bits), Expect = 0.00086, P = 0.00086
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L+++ G I E + SR +Q ++ + AER VF E+ L + + ++++K
Sbjct: 604 LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 663
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 133
+ S +Q + GHV SL M G V++ A + + Q+ E++ EL L+
Sbjct: 664 FEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCV 723
Query: 134 KN 135
K+
Sbjct: 724 KD 725
Score = 121 (47.7 bits), Expect = 0.00086, P = 0.00086
Identities = 63/299 (21%), Positives = 128/299 (42%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+ +E LQ + ++ G++V +Q ++ S ++ A+ E ++ H LSLA Y
Sbjct: 639 VFNEILQAAYQLMVDVFGNYV----IQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCR 694
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYST 128
+++K L+ Q + L GHV ++ G+ VV+ + Q Q L + +
Sbjct: 695 VIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIE---CVQPQSLQFIIDAF 751
Query: 129 ELQLFKNLVSIKESRLVDVISKLGL--QKASVLRHMASVIQPILEKGIIDHSIIHRVLME 186
+ Q+F R++ I + L Q +L + + +++ ++ I H ++E
Sbjct: 752 KGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH--VLE 809
Query: 187 YLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERXXXXXXX------ 240
+ DKS I+ ++ G +LV H + S + CV H S ER
Sbjct: 810 HGRPEDKSK---IVAEIRGNVLVLSQH-KFASNVVEKCVTHASRTERAVLIDEVCTMNDG 865
Query: 241 -XXXXXXVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ DQ + V+ ++ + + + KI++ +++ I L G+ +L +L
Sbjct: 866 PHSALYTMMKDQYANYVVQKMIDVAEPGQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 922
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 122 (48.0 bits), Expect = 0.00088, P = 0.00088
Identities = 24/126 (19%), Positives = 63/126 (50%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAER-DAVFEELQPHFLSLADNTYA 66
++I+E ++++ G + + + V+Q C++ C Q + + + + +L+ + Y
Sbjct: 951 QVINEMVRELDGHVLKCVKDQNGNHVVQKCIE-CVQPQSLQFIIDAFKGQVFALSTHPYG 1009
Query: 67 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY 126
+++++L++ +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 1010 CRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIR 1069
Query: 127 STELQL 132
L L
Sbjct: 1070 GNVLVL 1075
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 540 496 0.00083 119 3 11 22 0.39 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 615 (65 KB)
Total size of DFA: 255 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 40.32u 0.15s 40.47t Elapsed: 00:00:02
Total cpu time: 40.33u 0.15s 40.48t Elapsed: 00:00:02
Start: Tue May 21 09:40:17 2013 End: Tue May 21 09:40:19 2013