BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009214
(540 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LRZ3|PUM24_ARATH Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1
Length = 641
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/533 (64%), Positives = 432/533 (81%), Gaps = 8/533 (1%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+LISEA++KMKGK+PEIA SHVSSRVLQTCVK+CSQAE+D +F ELQP FL+LA N YAV
Sbjct: 110 KLISEAIRKMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDVLFTELQPQFLNLASNKYAV 169
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYS 127
H ++KMLD ASK+QLA IS+L GHVA LLRH+ GS+VVEHAY LG+A QKQELL ELYS
Sbjct: 170 HFIQKMLDGASKQQLAACISSLRGHVAPLLRHVFGSLVVEHAYHLGSAAQKQELLAELYS 229
Query: 128 TELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEY 187
TELQLFK L + E +VD+I+KLGLQK +V RHM ++IQPILEKGI+DH+I H++L+EY
Sbjct: 230 TELQLFKGLTTSNEKTVVDIIAKLGLQKGAVNRHMTAIIQPILEKGIVDHTITHKLLIEY 289
Query: 188 LSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKV 247
L++ADK+SAAD++Q L+G LL+RM+HTRDGS++ ML +KHGSAKERKKIIK MK H+ K+
Sbjct: 290 LTIADKTSAADVLQLLTGSLLLRMVHTRDGSRLAMLSIKHGSAKERKKIIKAMKEHVKKM 349
Query: 248 AHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSRYL 307
A DQ GSMVL CI SIVDDTKL+ KII+REL++ +K+LVMDKNGRR LLQLLHPN SRYL
Sbjct: 350 AFDQFGSMVLACIFSIVDDTKLVTKIIVRELEATLKDLVMDKNGRRPLLQLLHPNSSRYL 409
Query: 308 SPDDLSSLNLSIPSLCAKEGSEVNSEAKN---NESSKEMADQEVVAVQADESTSPAENLP 364
S DDL++L+LS+PSLC+ + SE +S+ K+ NE +E D++ V E + EN+
Sbjct: 410 SHDDLAALDLSVPSLCSMDKSETSSKTKDTDGNEIGEETKDEQEDTVA--EHSDHEENVT 467
Query: 365 LAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILR 424
A GGKKDP VRRQELLV+SGLAE +IDVC+ENA E L+S FG EV+YEVA GGSD IL
Sbjct: 468 -AMGGKKDPLVRRQELLVNSGLAERLIDVCVENAEEFLQSKFGNEVMYEVAIGGSDGILC 526
Query: 425 PTLDDKLNTLHETIASLASESKSEASEE--EHVLENFHSSRTIRKLVMDCPKFASTLWKN 482
P+L +KL L+E I+S+A+E K + SE+ EH+LENFHSSRTIR+LV++ P FAS L+K
Sbjct: 527 PSLSEKLCELYEAISSVAAEPKPQESEKDSEHILENFHSSRTIRRLVLNRPGFASILFKK 586
Query: 483 ALKGKSEFWAQGHSCKVVTAFLESSDFKVRELAKTELQPLIDSGSLKIPEAKQ 535
AL GK WAQGH K+++AF+E+ D +VRE+AKTELQ L++ G+LKI K+
Sbjct: 587 ALSGKCRSWAQGHCSKILSAFVETEDVQVREMAKTELQVLVNEGTLKISATKK 639
>sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 homolog OS=Rattus
norvegicus PE=2 SV=1
Length = 647
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 184/307 (59%), Gaps = 8/307 (2%)
Query: 7 IRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYA 66
++L+S+ + ++GKI IA +H S+RV+Q ++Y S+ +R FEELQ + L+ Y+
Sbjct: 155 VKLMSDLQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYS 214
Query: 67 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-L 125
++VKK L SK Q+A I + GHV +LRH S +VE+AY +++ +L E L
Sbjct: 215 RNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEEL 274
Query: 126 YSTELQLFKNLVSIKESRLVDV-ISKLGLQKASVLRHMASVIQPILEK-GIIDHSIIHRV 183
Y QL+K+ ++++V KL L +L M ++ P+ +K +I HS++H+V
Sbjct: 275 YGNTFQLYKSADHPTLEKVLEVQPGKLEL----ILDEMKQILTPMAQKEAVIKHSLVHKV 330
Query: 184 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGH 243
+++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+RK I+K MK +
Sbjct: 331 FLDFFTYAPPKLRSELIEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTY 389
Query: 244 IGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNC 303
+ K+A+ Q +VLL +DDTKL+ +III E+ S + +V DK GR+VLL LL P
Sbjct: 390 VEKIANGQYSHLVLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSPRA 449
Query: 304 SRYLSPD 310
+L P+
Sbjct: 450 PAHLVPE 456
>sp|Q15397|K0020_HUMAN Pumilio domain-containing protein KIAA0020 OS=Homo sapiens
GN=KIAA0020 PE=1 SV=3
Length = 648
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 152/534 (28%), Positives = 268/534 (50%), Gaps = 76/534 (14%)
Query: 7 IRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYA 66
++L+S+ + ++GKI IA +H S+RV+Q ++Y ++ +R FEEL+ + L+ Y+
Sbjct: 156 VKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYS 215
Query: 67 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-L 125
++VKK L SK Q+A I + GHV +LRH S +VE+AY +++ +L E L
Sbjct: 216 RNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEEL 275
Query: 126 YSTELQLFKNLVSIKESRLVDVISKLGLQKAS-VLRHMASVIQPILEK-GIIDHSIIHRV 183
Y QL+K+ + R +D + ++ +K ++ M ++ P+ +K +I HS++H+V
Sbjct: 276 YGNTFQLYKSA----DHRTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKV 331
Query: 184 LMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGH 243
+++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+RK I+K MK +
Sbjct: 332 FLDFFTYAPPKLRSEMIEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTY 390
Query: 244 IGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNC 303
+ KVA+ Q +VLL +DDTKL+ +III E+ S + +V DK GR+VLL L
Sbjct: 391 VEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYL----- 445
Query: 304 SRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAENL 363
LSP D P+ +E EV + N S
Sbjct: 446 ---LSPRD--------PAHTVREIIEVLQKGDGNAHS----------------------- 471
Query: 364 PLAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDIL 423
KKD VRR+ELL S ++ +++ E+A E++ ++ ++ + D+
Sbjct: 472 ------KKDTEVRRRELLES--ISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDV- 522
Query: 424 RPTLDDKLNTLHETIASLASESKSEASE--EEHVLENFHSSRTIRKLVMDCPK------- 474
+PT++ IASLA+ + E H+ E+ ++ L+ K
Sbjct: 523 QPTMN--------AIASLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGRE 574
Query: 475 --FASTLWKNALKGKSEFWAQ-GHSCKVVTAFLESSDFKVRELAKTELQPLIDS 525
FA TL ++ + WA ++++ L+S D +V K L+ LI +
Sbjct: 575 GCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPT 628
>sp|Q8BKS9|K0020_MOUSE Pumilio domain-containing protein KIAA0020 OS=Mus musculus
GN=Kiaa0020 PE=2 SV=2
Length = 647
Score = 175 bits (444), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 183/309 (59%), Gaps = 12/309 (3%)
Query: 7 IRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYA 66
++L+S+ + ++GKI IA +H S+RV+Q ++Y ++ +R F+ELQ + L+ Y+
Sbjct: 155 VKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYS 214
Query: 67 VHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE-L 125
++VKK L SK Q+A I + GHV +LRH S +VE+AY +++ +L E L
Sbjct: 215 RNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEEL 274
Query: 126 YSTELQLFKNLVSIKESRLVDVISKLGLQKAS---VLRHMASVIQPILEK-GIIDHSIIH 181
Y QL+K+ + +D + L LQ A ++ M ++ P+ +K +I HS++H
Sbjct: 275 YGNTFQLYKSA----DHPTLDKV--LELQPAKLELIMDEMKQILTPMAQKEAVIKHSLVH 328
Query: 182 RVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK 241
+V +++ + A +++I+ + +V + HT DG+++ M C+ HG+ K+RK I+K MK
Sbjct: 329 KVFLDFFTYAPPKPRSELIEAIR-EAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMK 387
Query: 242 GHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301
++ KVA+ Q +VLL +DDTKL+ +III E+ S + +V DK GR+VLL L+ P
Sbjct: 388 TYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLMSP 447
Query: 302 NCSRYLSPD 310
+ P+
Sbjct: 448 RDPAHTVPE 456
>sp|Q9UU76|PUF6_SCHPO Pumilio homology domain family member 6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=puf6 PE=1 SV=1
Length = 642
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 133/532 (25%), Positives = 245/532 (46%), Gaps = 91/532 (17%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+I+E ++ + ++ H SRV+QTCVK+ S+ +R+ + EL ++ L + Y +
Sbjct: 154 IIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGSKQQRETICAELAGSYVDLCKSPYGKY 213
Query: 69 LVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAY-QLGNATQKQELLVELYS 127
L K+ + K + ++G+V ++RH + VVE A+ + N Q++ L+ E Y
Sbjct: 214 LAIKIFKYGTPKMKEVILGEMYGNVVKMIRHREAAYVVEDAFREFTNLQQQRALICEFYG 273
Query: 128 TELQLFKNLVSIKESRLVDV-ISKLGL----QKASVLRHMASVIQPILEKGIIDHSIIHR 182
E Q+FK+ R D+ I KL + ++ S+++++ I+ + KG I +++HR
Sbjct: 274 PEFQVFKD-------RTQDIHIDKLLIDHPEKRPSIMQNLWKTIEGSIAKGSIGFTMVHR 326
Query: 183 VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKG 242
++E+++ AD + A +++ L+ L+ +HTRDGS++ M +AK+RK ++K ++
Sbjct: 327 AMLEFINHADSNEAKELLN-LTKELIYEFVHTRDGSQVAMKLFALANAKDRKVMLKSLRP 385
Query: 243 HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQ-LLHP 301
++ + A D G +V++ + DDT + K++ E + + +L DK RR+LL L+
Sbjct: 386 YLIETAKDSYGHLVVVAALDCTDDTIMTGKLLQAEFEGELLKLSADKFARRILLYVLVGW 445
Query: 302 NCSRYLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAE 361
+RY S ++ L S+ SL AK
Sbjct: 446 EDARYFSKENRELLR-SLDSLKAK------------------------------------ 468
Query: 362 NLPLAEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDD 421
KKDP VRR EL + G +I + + AG+++ + +VL D
Sbjct: 469 ------TSKKDPIVRRNELKATIG--PLLISLISKAAGDMIAESLASQVLV--------D 512
Query: 422 ILRPTLDDKLNTLHETIASLASESKSEASEEEHVLENFHSSRTIRKLVMDCPKFASTLWK 481
L +K + T+ + ++ H++ H SR ++ LV + S K
Sbjct: 513 ALLYAPCEKEEAVDATLKAF----DGNPEQDNHLIHQIHCSRALKTLVQNG--HWSGAEK 566
Query: 482 NALKGKSEF----------------WAQGHSCKVVTAFLES-SDFKVRELAK 516
+K + + WA G VV A LE+ SD + +E K
Sbjct: 567 QVVKAEDDLKVASKLIVIIKKYLVEWASGDGAFVVVAVLEALSDSEKQEFLK 618
>sp|Q04373|PUF6_YEAST Pumilio homology domain family member 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF6 PE=1 SV=1
Length = 656
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 118/465 (25%), Positives = 225/465 (48%), Gaps = 55/465 (11%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+L +E + K I ++ H +SR++QT VKY S+ R+ + + L+ F LA + Y
Sbjct: 148 KLSNEIWELSKDCISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGK 207
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQL-GNATQKQELLVELY 126
+L+ K+L S+ I+ LHG + L+RH G+ VVE + L Q+Q+++ E +
Sbjct: 208 YLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFW 267
Query: 127 STELQLFKNLVSIKESRLVDVISKLGLQKASVL-RHMASVIQPILEKGIIDHSIIHRVLM 185
+E +F+ + ++ + + ++K +++ R++ I +EKG I+H +
Sbjct: 268 GSEYAVFR---ETHKDLTIEKVCESSIEKRNIIARNLIGTITASVEKGSTGFQILHAAMR 324
Query: 186 EYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIG 245
EY+ +A++ +++I+ L ++HT +GS + V +AKERK I+K +K H
Sbjct: 325 EYVKIANEKEISEMIELLHEQF-AELVHTPEGSDVACTLVARANAKERKLILKALKNHAE 383
Query: 246 KVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSR 305
K+ ++ G++V + I++ VDDT L+ K ++ ++E ++DK GRR L +L +
Sbjct: 384 KLIKNEYGNIVFITILNCVDDTVLVFKTFSPTVKEHLQEFIIDKFGRRPWLYILLGLDGK 443
Query: 306 YLSPDDLSSLNLSIPSLCAKEGSEVNSEAKNNESSKEMADQEVVAVQADESTSPAENLPL 365
Y SP + ++ + ++ ++TS
Sbjct: 444 YFSPI--------------------------------VKNELLRYIELSKATS------- 464
Query: 366 AEGGKKDPRVRRQELLVSSGLAESMIDVCIENAGELLRSNFGKEVLYEVAKGGSDDILRP 425
KKDP RR ELL S A + ++ +L N G + + EV +D L
Sbjct: 465 ----KKDPLQRRHELL--SKFAPMFLSTISKDYSSILTENLGCQFIAEVL---INDELYA 515
Query: 426 TLDDK-LNTLHETIASLASESKSEASEEEHVLENFHSSRTIRKLV 469
L++K + + ++ + K + +EEEH + S+R ++ L+
Sbjct: 516 QLNEKDQEKYQQVLNNILTTFKGDITEEEHPIHRAFSTRLLKALI 560
>sp|Q09622|PUF12_CAEEL Pumilio domain-containing protein 12 OS=Caenorhabditis elegans
GN=puf-12 PE=4 SV=1
Length = 766
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 163/302 (53%), Gaps = 9/302 (2%)
Query: 17 MKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDN 76
+KG ++ +H +SRV++ V + + +F EL P + ++ N Y+ VKKML N
Sbjct: 278 VKGHAAKLIYAHDTSRVIECLVATEREGIINNLFNELTPEIVRMSKNVYSKFFVKKMLKN 337
Query: 77 ASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQ-LGNATQKQELLVELYSTELQLFK- 134
+K+Q I+A GH +LLR + V+E+AY NA Q+ ++ E Y E LF+
Sbjct: 338 GTKEQRDIIINAFRGHAPTLLRIKHAAEVLEYAYNDFANAHQRYNIITEFYGKEFILFRE 397
Query: 135 -NLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADK 193
N+ S L +++++ +K +L+H+ VI + EK + SI+H++++++ D+
Sbjct: 398 DNIRS-----LTEILAEKPEKKVVILKHLDEVIGAVNEKETLRLSILHKLMLDFFDNCDE 452
Query: 194 SSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCG 253
+++ L + IHT DG+K+ + + KERK I+K K K A + G
Sbjct: 453 EKKINLLDSLKDKI-PEFIHTPDGAKLAIKLIWFAPVKERKLIVKNFKDLSVKAAMEHYG 511
Query: 254 SMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSRYLSPDDLS 313
VLL + VDDT L+ K+I+ EL + +K+L+ D G +V+ L+HP R + +++
Sbjct: 512 HRVLLALFDTVDDTVLLNKVIVSELANEMKKLIEDDWGEKVIHYLVHPRDGRGIDKREIT 571
Query: 314 SL 315
L
Sbjct: 572 FL 573
>sp|O61345|PEN_DROME Protein penguin OS=Drosophila melanogaster GN=pen PE=2 SV=1
Length = 737
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 150/292 (51%), Gaps = 6/292 (2%)
Query: 21 IPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKK 80
I ++ +H ++RV+Q+ +KY S A R + E+L P + + + YA V++ML +
Sbjct: 172 ISKVVKAHDTARVIQSMLKYASPALRAEISEKLLPFTVEMCQSKYAQFCVQRMLKYGAPA 231
Query: 81 QLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIK 140
A + +L+GH+ L H +GS +++ YQ Q+ + E Y L++
Sbjct: 232 TKAKLVDSLYGHIVRLAGHSIGSGLLDSMYQSATPNQRIYMRQEFYG---DLYRKAKDSN 288
Query: 141 ESRLVDVISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAA--D 198
L D + KAS+L + + + + K ++D +++H V++EYL D+ +
Sbjct: 289 VKTLSDTYKEATNMKASILGSVKANLDHVANKQLVDSALVHAVMLEYLRACDEDEEKLEE 348
Query: 199 IIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLL 258
+ + L+ M+ T++GS+ ++C + K R+ IIK +K H+ K+A+ + G + L+
Sbjct: 349 TVTAFAA-LVPHMLSTKEGSEAAVICFYKSTPKNRRAIIKNIKEHLLKIANHEHGHVFLI 407
Query: 259 CIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQLLHPNCSRYLSPD 310
+++ +DDTK K I L +K L+ GRRV+ L+ P + P+
Sbjct: 408 SLLNALDDTKATKKAIYDHLHGDLKALMSSPYGRRVIQWLVAPGDTTCFHPE 459
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 141/310 (45%), Gaps = 42/310 (13%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L + G++ E + SR +Q +++CS E+ +VF E+ P L + + ++++K
Sbjct: 626 LSDIAGRVVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKF 685
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 133
+++ + Q + L G + SL M G V++ A ++ + QK EL+ EL L+
Sbjct: 686 IEHGTPAQREELVKQLAGQMVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCV 745
Query: 134 KN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPILEKGIID---HS 178
++ + S+ R+ VI+ Q A++ H VIQ ILE D H
Sbjct: 746 RDQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHC 805
Query: 179 IIHRVLMEYLSMADKSSAA----------------DIIQQLSGPLLVRMIHTRDGSKIGM 222
II +L ++A II++L+G +V+M + S +
Sbjct: 806 IIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTG-NVVQMSQHKYASNVVE 864
Query: 223 LCVKHGSAKERKKIIKGMKG------HIGKVAHDQCGSMVLLCIVSIVDDTK---LIAKI 273
C++H + ER+ +I+ + G H+ + DQ + V+ ++ I D + L+ ++
Sbjct: 865 KCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQREILVQRM 924
Query: 274 IIRELQSIIK 283
I LQS+ K
Sbjct: 925 KI-HLQSLRK 933
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 137/332 (41%), Gaps = 40/332 (12%)
Query: 4 FLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADN 63
F R + L+++ G I E + SR +Q ++ + AER VF E+ L +
Sbjct: 836 FRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVD 895
Query: 64 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLV 123
+ ++++K + S +Q + GHV SL M G V++ A + + Q+ E++
Sbjct: 896 VFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVR 955
Query: 124 ELYSTELQLFKN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPILE 171
EL L+ K+ + ++ L +I Q ++ H VIQ ILE
Sbjct: 956 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1015
Query: 172 KGIIDHSI-----IHR-------------VLMEYLSMADKSSAADIIQQLSGPLLVRMIH 213
+ D ++ +H+ V+ L + I+ ++ G +LV H
Sbjct: 1016 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1075
Query: 214 TRDGSKIGMLCVKHGSAKERKKII-------KGMKGHIGKVAHDQCGSMVLLCIVSIVDD 266
+ S + CV H S ER +I G + + DQ + V+ ++ + +
Sbjct: 1076 -KFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1134
Query: 267 TKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ KI++ +++ I L G+ +L +L
Sbjct: 1135 GQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 1164
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 137/332 (41%), Gaps = 40/332 (12%)
Query: 4 FLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADN 63
F R + L+++ G I E + SR +Q ++ + AER VF E+ L +
Sbjct: 836 FRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVD 895
Query: 64 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLV 123
+ ++++K + S +Q + GHV SL M G V++ A + + Q+ E++
Sbjct: 896 VFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVR 955
Query: 124 ELYSTELQLFKN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPILE 171
EL L+ K+ + ++ L +I Q ++ H VIQ ILE
Sbjct: 956 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILE 1015
Query: 172 KGIIDHSI-----IHR-------------VLMEYLSMADKSSAADIIQQLSGPLLVRMIH 213
+ D ++ +H+ V+ L + I+ ++ G +LV H
Sbjct: 1016 HCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 1075
Query: 214 TRDGSKIGMLCVKHGSAKERKKII-------KGMKGHIGKVAHDQCGSMVLLCIVSIVDD 266
+ S + CV H S ER +I G + + DQ + V+ ++ + +
Sbjct: 1076 -KFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEP 1134
Query: 267 TKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ KI++ +++ I L G+ +L +L
Sbjct: 1135 GQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 1164
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 132/326 (40%), Gaps = 42/326 (12%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L + G I E + SR +Q ++ C E+ AVF E+ PH L + + ++++K
Sbjct: 530 LSDITGHIVEFSADQHGSRFIQQKLENCKPEEKAAVFREILPHACKLMTDVFGNYVIQKF 589
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 133
+ + Q L G + L M G V++ A + Q+ L EL ++
Sbjct: 590 FEYGNSTQRKELADQLMGQIVPLSLQMYGCRVIQKALDVIEPDQRVRLARELDGQVMRCV 649
Query: 134 KN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPILEKGIIDHS--I 179
++ + +I ++ ++ Q +S+ H VIQ +LE+ DH
Sbjct: 650 RDQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRLLERCSHDHQCRF 709
Query: 180 IHRVLMEYLSMADKSSAADIIQQ-----------------LSGPLLVRMIHTRDGSKIGM 222
I ++E + + K + + Q LSG ++ +H + S +
Sbjct: 710 ITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQLSLH-KFASNVIE 768
Query: 223 LCVKHGSAKERKKIIKGMKG------HIGKVAHDQCGSMVLLCIV-SIVDDTKLIAKIII 275
C+++G ER IIK + G + + DQ G+ V+ I + D +L +
Sbjct: 769 KCLEYGGRVERDLIIKEIAGPDESYNSLLMMMKDQYGNYVVQKIFETCTADQRLTLFSRV 828
Query: 276 RELQSIIKELVMDKNGRRVLLQLLHP 301
R S +K+ G+ ++ +L P
Sbjct: 829 RMHASALKKYTY---GKHIVSRLEQP 851
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 137/334 (41%), Gaps = 42/334 (12%)
Query: 4 FLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADN 63
F R + L+++ G I E + SR +Q ++ + AER VF E+ L +
Sbjct: 837 FRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATAAERQLVFNEILQAAYQLMVD 896
Query: 64 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQK--QEL 121
+ ++++K + S +Q + GHV SL M G V++ A + + Q+ E+
Sbjct: 897 VFGNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEM 956
Query: 122 LVELYSTELQLFKN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPI 169
+ EL L+ K+ + ++ L +I Q ++ H VIQ I
Sbjct: 957 VRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1016
Query: 170 LEKGIIDHSI-----IHR-------------VLMEYLSMADKSSAADIIQQLSGPLLVRM 211
LE + D ++ +H+ V+ L + I+ ++ G +LV
Sbjct: 1017 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1076
Query: 212 IHTRDGSKIGMLCVKHGSAKERKKII-------KGMKGHIGKVAHDQCGSMVLLCIVSIV 264
H + S + CV H S ER +I G + + DQ + V+ ++ +
Sbjct: 1077 QH-KFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVA 1135
Query: 265 DDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ + KI++ +++ I L G+ +L +L
Sbjct: 1136 EPGQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 1167
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 134/277 (48%), Gaps = 18/277 (6%)
Query: 31 SRVLQTCVKYCSQAERDAVFEEL-QPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISAL 89
SR +Q + ++ ER+AVF+E+ L L + + ++V+K + ++KQ +S +
Sbjct: 411 SRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYFEFGNEKQKQILLSQI 470
Query: 90 HGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF--KNLVSIKESRLVDV 147
GHV SL M G VV+ A + + + +L+ EL L +N + + + ++
Sbjct: 471 KGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNHVIQ-KAIEC 529
Query: 148 ISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPL 207
I LQ +LR + I +L +I R + E+ K II++L P
Sbjct: 530 IDTGHLQ--FILRALRPQIH-VLSAHPYGCRVIQRAI-EHCHSERKL----IIEELL-PH 580
Query: 208 LVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVA-HDQCGSMVLLCI--VSIV 264
++++ + G+ + ++ GS ++K I M H+ ++ H ++V CI +S V
Sbjct: 581 ILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVERCISYISDV 640
Query: 265 DDTKLIAKIIIRELQ--SIIKELVMDKNGRRVLLQLL 299
D +++ KII + + SI+ ++ DK V+ +LL
Sbjct: 641 DRRRILNKIISEKAENCSILMLMMKDKYANYVIQKLL 677
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L+ ++ +I ++ RV+Q +++C +ER + EEL PH L L + Y ++V+ +
Sbjct: 539 LRALRPQIHVLSAHPYGCRVIQRAIEHC-HSERKLIIEELLPHILKLTQDQYGNYVVQHI 597
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVE 107
L S+ + H+ L H S VVE
Sbjct: 598 LRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVE 631
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L ++KG + ++ RV+Q ++Y S + + +EL H L + H+++K
Sbjct: 467 LSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGHVLDCVCDQNGNHVIQKA 526
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQK---QELLVELYSTEL 130
++ L + AL + L H G V++ A + ++ +K +ELL +
Sbjct: 527 IECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERKLIIEELLPHILKLTQ 586
Query: 131 QLFKNLV 137
+ N V
Sbjct: 587 DQYGNYV 593
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 123/292 (42%), Gaps = 38/292 (13%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
L ++ G + E + SR +Q ++ + E++ V+EE+ PH L+L + + ++++K
Sbjct: 632 LAEIAGHVVEFSSDQYGSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKF 691
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLF 133
++ Q L +V L M G V++ A ++ + QK +++ EL ++
Sbjct: 692 FEHGLPPQRRELADKLFDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCV 751
Query: 134 KN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPILE--KGIIDHSI 179
++ + + E + +IS ++ H VIQ +LE S
Sbjct: 752 RDQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEHCHDPDTQSK 811
Query: 180 IHRVLMEYLSMADKSSAAD-----------------IIQQLSGPLLVRMIHTRDGSKIGM 222
+ +M +SM + + II++L+G +V+M + S +
Sbjct: 812 VMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAG-KIVQMSQQKFASNVVE 870
Query: 223 LCVKHGSAKERKKIIKGMKGHIGK------VAHDQCGSMVLLCIVSIVDDTK 268
C+ G +ER+ ++ M G + + DQ + V+ ++ DD +
Sbjct: 871 KCLTFGGPEEREFLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQ 922
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 136/334 (40%), Gaps = 42/334 (12%)
Query: 4 FLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADN 63
F R + L+++ G I E + SR +Q ++ + AER VF E+ L +
Sbjct: 837 FRNNRYPNLQLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVD 896
Query: 64 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQK--QEL 121
+ ++++K + S +Q + GHV SL M G V++ A + Q+ E+
Sbjct: 897 VFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINEM 956
Query: 122 LVELYSTELQLFKN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPI 169
+ EL L+ K+ + ++ L +I Q ++ H VIQ I
Sbjct: 957 VRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1016
Query: 170 LEKGIIDHSI-----IHR-------------VLMEYLSMADKSSAADIIQQLSGPLLVRM 211
LE + + ++ +H+ V+ L + I+ ++ G +LV
Sbjct: 1017 LEHCLPEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1076
Query: 212 IHTRDGSKIGMLCVKHGSAKERKKII-------KGMKGHIGKVAHDQCGSMVLLCIVSIV 264
H + S + CV H S ER +I G + + DQ + V+ ++ +
Sbjct: 1077 QH-KFASNVVEKCVTHASRTERAMLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVA 1135
Query: 265 DDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
+ + KI++ +++ I L G+ +L +L
Sbjct: 1136 EPAQ--RKIVMHKIRPHIATLRKYTYGKHILAKL 1167
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 101/231 (43%), Gaps = 43/231 (18%)
Query: 31 SRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALH 90
SR +Q + +E++ +F E++ + L+++ + ++++K + SK Q +
Sbjct: 553 SRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFK 612
Query: 91 GHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISK 150
G++ L M V++ A + ++ Q+ EL++EL + LQ+ IK+ VI
Sbjct: 613 GNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQM------IKDQNGNHVI-- 664
Query: 151 LGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVR 210
QKA I + +E L I+ L+G +
Sbjct: 665 ---QKA-----------------------IETIPIEKLPF--------ILSSLTGHIYHL 690
Query: 211 MIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLLCIV 261
H+ G ++ ++ GS+++++ I+ +K I + DQ G+ V+ ++
Sbjct: 691 STHSY-GCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVL 740
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 57/112 (50%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKM 73
+ + KG + +++ + RV+Q ++Y +R + EL L + + H+++K
Sbjct: 608 VDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKA 667
Query: 74 LDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 125
++ ++L +S+L GH+ L H G V++ + G++ ++ +L EL
Sbjct: 668 IETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNEL 719
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/125 (18%), Positives = 60/125 (48%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
++ISE ++++ G + + + V+Q C++ + + + L+ + Y
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGC 887
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYS 127
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 888 RVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG 947
Query: 128 TELQL 132
L L
Sbjct: 948 KVLAL 952
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 11 SEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEEL-----QPH--FLSLADN 63
S+ + +++GK+ ++ +S V++ CV + S+AER + +E+ PH ++ +
Sbjct: 939 SKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKD 998
Query: 64 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVG 102
YA ++V+KM+D A Q + + H+ +L ++ G
Sbjct: 999 QYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYG 1037
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 132/330 (40%), Gaps = 42/330 (12%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
R + L+ + G I E + SR +Q ++ + AER VF E+ L + +
Sbjct: 718 RFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGN 777
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQK--QELLVEL 125
++++K + S Q + + GHV L M G V++ A + ++ Q+ E++ EL
Sbjct: 778 YVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKEL 837
Query: 126 YSTELQLFKN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPILEKG 173
L+ K+ + ++ L +I Q + H VIQ ILE
Sbjct: 838 DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHC 897
Query: 174 IIDHSI-----IHR-------------VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTR 215
+ ++ +H+ V+ L + I+ ++ G +L H +
Sbjct: 898 TAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQH-K 956
Query: 216 DGSKIGMLCVKHGSAKERKKII-------KGMKGHIGKVAHDQCGSMVLLCIVSIVDDTK 268
S + CV H S ER +I G + + DQ + V+ ++ + + +
Sbjct: 957 FASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ 1016
Query: 269 LIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
KII+ +++ I L G+ +L +L
Sbjct: 1017 --RKIIMHKIRPHITTLRKYTYGKHILAKL 1044
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/125 (18%), Positives = 60/125 (48%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
++ISE ++++ G + + + V+Q C++ + + + L+ + Y
Sbjct: 828 QVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGC 887
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYS 127
+++++L++ + +Q + LH H L++ G+ V++H + G K +++ E+
Sbjct: 888 RVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRG 947
Query: 128 TELQL 132
L L
Sbjct: 948 KVLAL 952
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 11 SEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEEL-----QPH--FLSLADN 63
S+ + +++GK+ ++ +S V++ CV + S+AER + +E+ PH ++ +
Sbjct: 939 SKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKD 998
Query: 64 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVG 102
YA ++V+KM+D A Q + + H+ +L ++ G
Sbjct: 999 QYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYG 1037
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 132/330 (40%), Gaps = 42/330 (12%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
R + L+ + G I E + SR +Q ++ + AER VF E+ L + +
Sbjct: 718 RFPNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGN 777
Query: 68 HLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQK--QELLVEL 125
++++K + S Q + + GHV L M G V++ A + ++ Q+ E++ EL
Sbjct: 778 YVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKEL 837
Query: 126 YSTELQLFKN----------LVSIKESRLVDVISKLGLQKASVLRHMAS--VIQPILEKG 173
L+ K+ + ++ L +I Q + H VIQ ILE
Sbjct: 838 DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHC 897
Query: 174 IIDHSI-----IHR-------------VLMEYLSMADKSSAADIIQQLSGPLLVRMIHTR 215
+ ++ +H+ V+ L + I+ ++ G +L H +
Sbjct: 898 TAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQH-K 956
Query: 216 DGSKIGMLCVKHGSAKERKKII-------KGMKGHIGKVAHDQCGSMVLLCIVSIVDDTK 268
S + CV H S ER +I G + + DQ + V+ ++ + + +
Sbjct: 957 FASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ 1016
Query: 269 LIAKIIIRELQSIIKELVMDKNGRRVLLQL 298
KII+ +++ I L G+ +L +L
Sbjct: 1017 --RKIIMHKIRPHITTLRKYTYGKHILAKL 1044
>sp|Q92347|NOP9_SCHPO Nucleolar protein 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nop9 PE=3 SV=1
Length = 655
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 47 DAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVV 106
D+++ E+Q L + +N + +++K+ ++ +Q+ F SAL+GH L++ GS
Sbjct: 91 DSIYREVQGKELIVCNNVFGSKVLEKLFPLSTSRQIKSFFSALNGHYVELIQTTFGSYAF 150
Query: 107 E 107
E
Sbjct: 151 E 151
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 51/97 (52%), Gaps = 12/97 (12%)
Query: 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNT--------Y 65
+ ++GK+ ++ +S V++ CV + ++ ER + +E+ + DN Y
Sbjct: 1325 INSVRGKVLVLSQHKFASNVVEKCVTHATRGERTGLIDEV----CTFNDNALHVMMKDQY 1380
Query: 66 AVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVG 102
A ++V+KM+D + QL ++ + H+A+L ++ G
Sbjct: 1381 ANYVVQKMIDVSEPTQLKKLMTKIRPHMAALRKYTYG 1417
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%)
Query: 16 KMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLD 75
++KG + ++A RV+Q ++ S ++ + EL H L + H+V+K ++
Sbjct: 1183 QVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQNGNHVVQKCIE 1242
Query: 76 NASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKN 135
L I+A G V SL H G V++ + A Q +L EL+ QL ++
Sbjct: 1243 CVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQD 1302
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 38/307 (12%)
Query: 4 FLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADN 63
F R + L+ + I E + SR +Q ++ + AE+ VF E+ SL +
Sbjct: 1099 FRNQRYPNLQLRDLANHIVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTD 1158
Query: 64 TYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLV 123
+ ++++K + + +Q + GHV L M G V++ A + + Q+QE++
Sbjct: 1159 VFGNYVIQKFFEFGTPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVH 1218
Query: 124 ELYSTELQLFK----NLVSIKESRLVD------VISKLGLQKASVLRHMAS--VIQPILE 171
EL L+ K N V K VD +I+ Q S+ H VIQ ILE
Sbjct: 1219 ELDGHVLKCVKDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILE 1278
Query: 172 ------------------KGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIH 213
+ +I + V+ L + + +I + G +LV H
Sbjct: 1279 HCTAEQTTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQH 1338
Query: 214 TRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAH----DQCGSMVLLCIVSIVDDT-- 267
+ S + CV H + ER +I + H DQ + V+ ++ + + T
Sbjct: 1339 -KFASNVVEKCVTHATRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQL 1397
Query: 268 -KLIAKI 273
KL+ KI
Sbjct: 1398 KKLMTKI 1404
>sp|B9W7H9|NOP9_CANDC Nucleolar protein 9 OS=Candida dubliniensis (strain CD36 / ATCC
MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=NOP9
PE=3 SV=1
Length = 710
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 41/66 (62%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
I+ L++ +GK ++ + + S++++ + + + + +F++ Q HF+SLA + YA H
Sbjct: 83 FINSVLEEAQGKELKLVTNQICSKLMERLILFANYNQLKKIFKQFQNHFVSLAFHKYASH 142
Query: 69 LVKKML 74
+++ +L
Sbjct: 143 VLETLL 148
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 104/247 (42%), Gaps = 20/247 (8%)
Query: 33 VLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGH 92
V+Q ++ + +R + E++ H L+L+ Y +++K L+ +Q A + L G
Sbjct: 717 VIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDGS 776
Query: 93 VASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKE-SRLVDVISKL 151
V + G+ V++ + Q ++ Y L L + + R+++ I +
Sbjct: 777 VMKCVHDQNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDI 836
Query: 152 GLQK---ASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLL 208
Q+ ++ + ++ Q +I H I H ++II +L+G +
Sbjct: 837 ETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQH---------GKPHERSEIINKLAGQ-I 886
Query: 209 VRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGK------VAHDQCGSMVLLCIVS 262
V+M + S + C+ G +ER+ ++ M G+ + + D G+ V+ ++
Sbjct: 887 VKMSQQKFASNVVEKCLTFGGPEERQVLVNEMLGYTDENEPLQAMMKDPFGNYVVQKVLE 946
Query: 263 IVDDTKL 269
DD L
Sbjct: 947 TCDDQSL 953
>sp|C4YEN2|NOP9_CANAW Nucleolar protein 9 OS=Candida albicans (strain WO-1) GN=NOP9 PE=3
SV=1
Length = 715
Score = 39.7 bits (91), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 40/66 (60%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
I+ L + +GK ++ + + S++++ + + + + +F++ Q HF+SLA + YA H
Sbjct: 88 FINSVLDEAQGKELKLVTNQICSKLMERLILFANHNQLKKIFKQFQNHFVSLAFHKYASH 147
Query: 69 LVKKML 74
+++ +L
Sbjct: 148 VLETLL 153
>sp|A5DWG1|NOP9_LODEL Nucleolar protein 9 OS=Lodderomyces elongisporus (strain ATCC 11503
/ CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=NOP9 PE=3 SV=1
Length = 716
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 40/70 (57%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
IS L++ +GK ++ + + S++++ + + ++ A+FE HF SLA + Y+ H
Sbjct: 78 FISSVLEEAQGKELKLVTNQICSKLMERLILFADSSQLKAIFETFSGHFASLAFHKYSSH 137
Query: 69 LVKKMLDNAS 78
+++ L A+
Sbjct: 138 VLETFLVRAA 147
>sp|Q0U154|NOP9_PHANO Nucleolar protein 9 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=NOP9 PE=3 SV=1
Length = 726
Score = 39.3 bits (90), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 152 GLQKASVLRHMASVIQPILEKGIIDHSI--IHRVLMEYLSMADKSSAADII----QQLSG 205
G + +LR S + + + G DHS +H L+ MA D+I +L+
Sbjct: 463 GFEVTRILRVSESPAENLKQNGKQDHSPEKVHGSLLAQTMMAVDGPLGDLIFDSLAKLTP 522
Query: 206 PLLVRMIHTRDGSKI--GMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSI 263
L V++ S+ L +H S R+K+I+ GH+G++A D S V+ +
Sbjct: 523 ELSVQLARDPTASRTLQAALTAEHASVIFRRKMIQQFYGHVGELALDPAASRVIDAVWHG 582
Query: 264 VDDTKLIAKIIIREL 278
I + I EL
Sbjct: 583 THGLAFIRERIAEEL 597
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/247 (19%), Positives = 99/247 (40%), Gaps = 56/247 (22%)
Query: 32 RVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHG 91
RV+Q ++ ++ + +EL H + + H+V+K ++ ++ + IS G
Sbjct: 714 RVIQKAIEVVDLDQKIQMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFG 773
Query: 92 HVASLLRHMVGSVVV----EHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDV 147
HV +L H G V+ EH + N + +++ E+ ST L ++
Sbjct: 774 HVVTLSTHPYGCRVIQRVLEHCH---NPDTQSKVMEEILSTVSMLTQD------------ 818
Query: 148 ISKLGLQKASVLRHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPL 207
++ V+Q +LE G D + II++L+G
Sbjct: 819 ------------QYGNYVVQHVLEHGKPDERTV------------------IIKELAG-K 847
Query: 208 LVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGK------VAHDQCGSMVLLCIV 261
+V+M + S + C+ G +ER+ ++ M G + + DQ + V+ ++
Sbjct: 848 IVQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVL 907
Query: 262 SIVDDTK 268
DD +
Sbjct: 908 ETCDDQQ 914
>sp|C7YQ16|NOP9_NECH7 Nucleolar protein 9 OS=Nectria haematococca (strain 77-13-4 / ATCC
MYA-4622 / FGSC 9596 / MPVI) GN=NOP9 PE=3 SV=1
Length = 743
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 23 EIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNAS---K 79
++A S SR+++ ++ + A++ +FE HFLSL + +A H + + ++
Sbjct: 107 KLASSQSCSRLMERLIQLSTTAQKKRLFEAFAGHFLSLVQHRFASHCCEALFLRSAGVVT 166
Query: 80 KQLAGFI 86
K+L+GF+
Sbjct: 167 KELSGFV 173
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 23 EIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQL 82
++ G+HV +Q C+ SQ + +F+ + L ++ + + +V++ D+AS Q+
Sbjct: 463 DLNGNHV----IQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQI 518
Query: 83 AGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELL 122
+ + H +L++ G+ V+++ +L N + ++
Sbjct: 519 EQLVEHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAII 558
>sp|Q75C70|NOP9_ASHGO Nucleolar protein 9 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP9 PE=3 SV=2
Length = 678
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+ I+ +++ KGK ++A S + S++++ + + A+F+ + F++L+ N YA
Sbjct: 83 QFINSVIEESKGKELKLATSQICSKLMERIILAADDQQLKAIFQGINGFFVNLSYNKYAS 142
Query: 68 HLVKKML 74
H+V+ +L
Sbjct: 143 HVVETLL 149
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/246 (20%), Positives = 100/246 (40%), Gaps = 54/246 (21%)
Query: 32 RVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHG 91
RV+Q ++ ++ + +EL H + + H+V+K ++ ++ + IS G
Sbjct: 718 RVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQKCIECVPEENIEFIISTFFG 777
Query: 92 HVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKL 151
HV +L H G V+ Q +L + + Q S++++ I
Sbjct: 778 HVVTLSTHPYGCRVI------------QRVLEHCHDPDTQ----------SKVMEEI--- 812
Query: 152 GLQKASVL---RHMASVIQPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLL 208
L S+L ++ V+Q +LE G D + II++L+G +
Sbjct: 813 -LSTVSMLAQDQYGNYVVQHVLEHGKPDERTV------------------IIKELAG-KI 852
Query: 209 VRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGK------VAHDQCGSMVLLCIVS 262
V+M + S + C+ G +ER+ ++ M G + + DQ + V+ ++
Sbjct: 853 VQMSQQKFASNVVEKCLTFGGPEERELLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLE 912
Query: 263 IVDDTK 268
DD +
Sbjct: 913 TCDDQQ 918
>sp|C5MFB4|NOP9_CANTT Nucleolar protein 9 OS=Candida tropicalis (strain ATCC MYA-3404 /
T1) GN=NOP9 PE=3 SV=1
Length = 705
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 40/66 (60%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
I+ L++ +GK ++ + + S++++ + + + + +F++ HF+SLA + Y+ H
Sbjct: 79 FINSVLEEAQGKELKLVTNQICSKLMERLILFANNKQLKKIFKQFSNHFVSLAFHKYSSH 138
Query: 69 LVKKML 74
+++ +L
Sbjct: 139 VLETLL 144
>sp|C4R8S9|NOP9_PICPG Nucleolar protein 9 OS=Komagataella pastoris (strain GS115 / ATCC
20864) GN=NOP9 PE=3 SV=1
Length = 645
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 48 AVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVE 107
+VFEE + L L N L+++++ N S +Q+ A +GH SL H S V+E
Sbjct: 79 SVFEEAKGKELKLVTNQICSKLMERLILNGSDRQVKRLFKAFNGHFLSLAVHKYSSHVLE 138
Query: 108 HAYQLGNATQKQELL 122
+ + + ELL
Sbjct: 139 TLFIRSASVIENELL 153
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 36/66 (54%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+S ++ KGK ++ + + S++++ + S + +F+ HFLSLA + Y+ H
Sbjct: 76 FVSSVFEEAKGKELKLVTNQICSKLMERLILNGSDRQVKRLFKAFNGHFLSLAVHKYSSH 135
Query: 69 LVKKML 74
+++ +
Sbjct: 136 VLETLF 141
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%)
Query: 2 FFFLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLA 61
++ + +++ ++GK E+A S V+Q + C + ++ EE+ H +A
Sbjct: 495 WYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIA 554
Query: 62 DNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLG 113
+ +V+ M++N + L I AL S V+E A + G
Sbjct: 555 RGQWGNWVVQHMVENGQGEDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSG 606
>sp|Q6BRH3|NOP9_DEBHA Nucleolar protein 9 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NOP9 PE=3
SV=2
Length = 720
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 40/70 (57%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
I L++ +GK ++ + + S++++ V + + + +F + HF++LA + Y+ H
Sbjct: 83 FIRSVLEEARGKELKLVTNQICSKLMERLVLFATDRQLKNIFRQFSGHFVALAHHKYSSH 142
Query: 69 LVKKMLDNAS 78
+++ +L A+
Sbjct: 143 VLETLLVRAA 152
>sp|Q9P789|YN8E_SCHPO Pumilio domain-containing protein P35G2.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP35G2.14 PE=1 SV=2
Length = 1065
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 20 KIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASK 79
++ +++ H+ + V+Q YCS ++ + E + PH + + +K++D AS
Sbjct: 777 EVSDLSSDHLGNTVVQKLFDYCSDPVKEMMLERIAPHLAQIGIHKNGTWAAQKIVDVAST 836
Query: 80 KQLAGFISA-LHGHVASLLRHMVGSVVVEHAYQLG 113
+ I+ L ++ L G+ VV+ + G
Sbjct: 837 EAQMRLIAKHLQPYIPLLFADQFGNYVVQTCLKFG 871
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 33 VLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGH 92
VLQ C+ Y S +R+ + E+ + L LA + Y + V+ +L+ +A ++ L GH
Sbjct: 363 VLQKCIAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGH 422
Query: 93 VASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLG 152
L S +VE ++ Q ++ EL S + F L+ + V + + L
Sbjct: 423 YVELSMQKFSSHMVERCLTHCPESRPQ-IVRELIS--VPHFDILIQDPYANFV-IQAALA 478
Query: 153 LQKASVLRHMASVIQP--ILEKGIIDHSIIHRVLME 186
+ K S+ + VI+P IL I R L++
Sbjct: 479 VTKGSLHATLVEVIRPHSILRNNPYCKRIFSRNLLK 514
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/245 (17%), Positives = 107/245 (43%), Gaps = 19/245 (7%)
Query: 52 ELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQ 111
E Q + +A + + ++ + ++ S S + HV L+ G+ +++
Sbjct: 198 EFQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKLLD 257
Query: 112 LGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILE 171
+ N Q+ ++++ + S QL + ++ +R+V L ++ R S+++ L
Sbjct: 258 VCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQR-----LVESIKTRKQISLVKSALR 312
Query: 172 KGIID-------HSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLC 224
G ++ + +I R L + LS D + I + + + + R G + C
Sbjct: 313 PGFLNLIRDLNGNHVIQRCL-QCLSTEDN----EFIFEDATKFCIDIATHRHGCCVLQKC 367
Query: 225 VKHGSAKERKKIIKGMKGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKE 284
+ + S +R+K++ + + +A D G+ + ++ + D + + A ++ +L+ E
Sbjct: 368 IAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAA--MLAQLKGHYVE 425
Query: 285 LVMDK 289
L M K
Sbjct: 426 LSMQK 430
>sp|A3LXG0|NOP9_PICST Nucleolar protein 9 OS=Scheffersomyces stipitis (strain ATCC 58785
/ CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=NOP9 PE=3
SV=1
Length = 711
Score = 35.8 bits (81), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 38/66 (57%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
I L++ +GK ++ + + S++++ + + S + +F + HF++LA + Y+ H
Sbjct: 84 FIRSVLEEARGKELKLVTNQICSKLMERLILFASDRQLKNIFGQFSGHFVALAHHKYSSH 143
Query: 69 LVKKML 74
+++ +L
Sbjct: 144 VLETLL 149
>sp|D4AMF9|NOP9_ARTBC Nucleolar protein 9 OS=Arthroderma benhamiae (strain ATCC MYA-4681
/ CBS 112371) GN=NOP9 PE=3 SV=1
Length = 716
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
I + KGK +IA S SR+++ + + A+ A+FE+ HFL L + +A H
Sbjct: 103 FIESVYTEAKGKELKIACSQSCSRLMEKLIAMSTPAQVKALFEKFSGHFLHLVQHRFASH 162
>sp|A7TH34|NOP9_VANPO Nucleolar protein 9 OS=Vanderwaltozyma polyspora (strain ATCC 22028
/ DSM 70294) GN=NOP9 PE=3 SV=1
Length = 677
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 38/67 (56%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
++++ LQ+ KGK ++ S + S++++ + C + +VF+ F +L+ + YA
Sbjct: 86 QMVTNVLQEAKGKELKLVTSQICSKLMERIILECDDMQLKSVFKAFNGFFYNLSCHKYAS 145
Query: 68 HLVKKML 74
H+++ +
Sbjct: 146 HVLETLF 152
>sp|B6Q5P5|NOP9_PENMQ Nucleolar protein 9 OS=Penicillium marneffei (strain ATCC 18224 /
CBS 334.59 / QM 7333) GN=nop9 PE=3 SV=1
Length = 697
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+ ++ KGK +IA S SR+L+ + S +R +F + HFL+L + +A H
Sbjct: 106 FVESVYEEAKGKELKIACSQSCSRLLEKIISLSSTDQRRRLFGKFLGHFLNLVQHRFASH 165
Query: 69 LVKKML-----------DNASKKQL 82
+ + NA KKQ+
Sbjct: 166 CCETLFVKVAPALSHKTHNAPKKQI 190
>sp|Q7S5H0|NOP9_NEUCR Nucleolar protein 9 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nop9
PE=3 SV=1
Length = 775
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 36/66 (54%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+ ++M+GK ++A S SR+++ + + ++ ++F+ HF+SL + +A H
Sbjct: 118 FLQNVYKEMRGKELKLASSQSCSRLMERLILLSNTRQKKSLFDAFGGHFISLVTHRFASH 177
Query: 69 LVKKML 74
+K+
Sbjct: 178 CCEKLF 183
>sp|E5A2Z3|NOP9_LEPMJ Nucleolar protein 9 OS=Leptosphaeria maculans (strain JN3 / isolate
v23.1.3 / race Av1-4-5-6-7-8) GN=NOP9 PE=3 SV=1
Length = 712
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+ + ++ +GK +IA S SRVL+ + + + +FE+ HFL+L + +A
Sbjct: 99 QWLKNVFKEAEGKELKIANSQSCSRVLERLILLSTPGQLKNIFEKFNGHFLNLVQHRFAS 158
Query: 68 HLVKKML 74
H + +
Sbjct: 159 HCCEALF 165
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 106/222 (47%), Gaps = 24/222 (10%)
Query: 5 LLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNT 64
LL+++I +L + + G+HV LQ C+ + + +F ++ + ++LA N
Sbjct: 567 LLLKIIIPSLTTLAC---DNNGTHV----LQKCIAKFPPEKLEPLFLSMEENLITLATNR 619
Query: 65 YAVHLVKKMLDNASKKQLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVE 124
+ ++++ LD + ++++ L+++ G+ +V+H +L N E ++E
Sbjct: 620 HGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLEL-NIQPYTERIIE 678
Query: 125 LYSTELQLFKNLVSIKESRLVDVISKLGLQKAS------VLRHMASVIQPILEKGIIDHS 178
+ F N+ + + + ++ AS +L+ S P +E+ ++D
Sbjct: 679 ------KFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFLSF--PNIEQ-LLDDC 729
Query: 179 IIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKI 220
+ V+ +L++AD+S I++ +S ++ ++ +TR G I
Sbjct: 730 YANYVMQRFLNVADESQKFLILRSISH-VIPKIQNTRHGRHI 770
>sp|B2AL40|NOP9_PODAN Nucleolar protein 9 OS=Podospora anserina (strain S / ATCC MYA-4624
/ DSM 980 / FGSC 10383) GN=NOP9 PE=3 SV=1
Length = 834
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 36/66 (54%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
++ ++ KGK ++A S SR+++ + + ++ ++F+ HF+SL + +A H
Sbjct: 138 FLANVYKEAKGKELKLASSQSCSRLMERLILLSNTKQKKSMFDAFSGHFISLVTHRFASH 197
Query: 69 LVKKML 74
+K+
Sbjct: 198 CCEKLF 203
>sp|Q2UKV0|NOP9_ASPOR Nucleolar protein 9 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=nop9 PE=3 SV=1
Length = 707
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 52/277 (18%)
Query: 29 VSSRVLQTCVKYCSQAERDAVFEELQPHFL-----SLADNTYAVHLVKKMLDNASKKQLA 83
V SR+L+T V+ C + F+ L +F+ SLA N A ++V ++L+ K L
Sbjct: 378 VGSRLLETIVR-CMPGK---AFKGLYKNFIRDQITSLARNITAGYVVLRVLERLGKDDLQ 433
Query: 84 GFISALHGHVASLL---RHMVGSVVVEH-----------------AYQLGNATQKQELLV 123
+ + V SLL R +V V++E AY A + +++L
Sbjct: 434 NALERIVPQVPSLLERSRMVVPKVLIERCLVRGVDTAPLARALEEAYDKDPARRLEQILR 493
Query: 124 ELYSTELQLFKNLVSIKESRLVDVISKLG--LQKASVLRHMASVIQPILEKGIIDHSIIH 181
+T+ L ++ K + S G L + + + M + PI G+I S++
Sbjct: 494 LESTTQEDLEESEQKPKGANAAPSQSSTGEKLHGSLLAQTMLTAPGPI--SGLIYSSLLA 551
Query: 182 RVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK 241
+ + +A +A+ ++QQ L V SA+ R++
Sbjct: 552 QSSESLVKIAKDPTASRVLQQ-------------------ALTVPTSSAQFRRQFAPRFT 592
Query: 242 GHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL 278
H+ ++A D GS V+ + D I + + +EL
Sbjct: 593 SHLKELALDSSGSHVVDALWPATKDIFFIKERMAQEL 629
>sp|B8N3R8|NOP9_ASPFN Nucleolar protein 9 OS=Aspergillus flavus (strain ATCC 200026 /
FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=nop9
PE=3 SV=1
Length = 707
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 112/277 (40%), Gaps = 52/277 (18%)
Query: 29 VSSRVLQTCVKYCSQAERDAVFEELQPHFL-----SLADNTYAVHLVKKMLDNASKKQLA 83
V SR+L+T V+ C + F+ L +F+ SLA N A ++V ++L+ K L
Sbjct: 378 VGSRLLETIVR-CMPGK---AFKGLYKNFIRDQITSLARNITAGYVVLRVLERLGKDDLQ 433
Query: 84 GFISALHGHVASLL---RHMVGSVVVEH-----------------AYQLGNATQKQELLV 123
+ + V SLL R +V V++E AY A + +++L
Sbjct: 434 NALERIVPQVPSLLERSRMVVPKVLIERCLVRGVDTAPLARALEEAYDKDPARRLEQILR 493
Query: 124 ELYSTELQLFKNLVSIKESRLVDVISKLG--LQKASVLRHMASVIQPILEKGIIDHSIIH 181
+T+ L ++ K S G L + + + M + PI G+I S++
Sbjct: 494 LESTTQEDLEESEQKPKGPNAAPSQSSTGEKLHGSLLAQTMLTAPGPI--SGLIYSSLLA 551
Query: 182 RVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK 241
+ + +A +A+ ++QQ L V SA+ R++
Sbjct: 552 QSSESLVKIAKDPTASRVLQQ-------------------ALTVPTSSAQFRRQFAPRFT 592
Query: 242 GHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIREL 278
H+ ++A D GS V+ + D I + + +EL
Sbjct: 593 SHLKELALDSSGSHVVDALWPATKDIFFIKERMAQEL 629
>sp|Q6CNC2|NOP9_KLULA Nucleolar protein 9 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS
2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP9 PE=3 SV=1
Length = 668
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 39/67 (58%)
Query: 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAV 67
+ I+ +++ KGK ++A S +SS++++ + + + +F+ + +LA + Y+
Sbjct: 82 QFINSVIEESKGKELKLATSQISSKLMERIIMESDETQLKTIFKAFNGFYFNLACHKYSS 141
Query: 68 HLVKKML 74
H+++ +L
Sbjct: 142 HVLETLL 148
>sp|D1ZSG5|NOP9_SORMK Nucleolar protein 9 OS=Sordaria macrospora (strain ATCC MYA-333 /
DSM 997 / K(L3346) / K-hell) GN=NOP9 PE=3 SV=1
Length = 761
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 36/66 (54%)
Query: 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVH 68
+ ++++GK ++A S SR+++ + + ++ ++F+ HF+SL + +A H
Sbjct: 122 FLQNVYKELRGKELKVASSQSCSRLMERLILLSNTRQKKSLFDAFGGHFISLVTHRFASH 181
Query: 69 LVKKML 74
+K+
Sbjct: 182 CCEKLF 187
>sp|Q5NL79|MUTS_ZYMMO DNA mismatch repair protein MutS OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=mutS PE=3
SV=2
Length = 869
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 318 SIPSLCAKEGSEV-----NSEAKNNESSKEMADQEVVAVQADESTSPAENLPL 365
+P + K SEV NS KNN+SS ++D + VQA ++ P N PL
Sbjct: 784 GLPPVVLKRASEVLAQLENSSGKNNDSSANLSDLPLFGVQAFQTVLPQNN-PL 835
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,898,357
Number of Sequences: 539616
Number of extensions: 7131248
Number of successful extensions: 24691
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 24404
Number of HSP's gapped (non-prelim): 231
length of query: 540
length of database: 191,569,459
effective HSP length: 122
effective length of query: 418
effective length of database: 125,736,307
effective search space: 52557776326
effective search space used: 52557776326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)