Query 009214
Match_columns 540
No_of_seqs 268 out of 1475
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 21:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bwt_A Protein PUF4; pumilio, 100.0 9.9E-45 3.4E-49 374.3 26.5 250 9-301 3-255 (333)
2 3k49_A MRNA-binding protein PU 100.0 3.2E-45 1.1E-49 383.1 20.8 245 14-301 26-274 (369)
3 3gvo_A Pumilio 2, pumilio homo 100.0 3.4E-44 1.2E-48 372.9 26.3 278 14-301 21-306 (351)
4 3k62_A FEM-3 mRNA-binding fact 100.0 3.2E-40 1.1E-44 348.5 22.9 279 13-301 22-346 (412)
5 3gvo_A Pumilio 2, pumilio homo 100.0 4.6E-39 1.6E-43 334.3 27.4 281 8-298 51-339 (351)
6 3v71_A PUF (pumilio/FBF) domai 100.0 3.1E-39 1.1E-43 338.5 23.4 278 14-301 14-326 (382)
7 3k49_A MRNA-binding protein PU 100.0 2E-37 6.9E-42 324.0 21.7 278 9-296 57-355 (369)
8 3bwt_A Protein PUF4; pumilio, 100.0 1.1E-36 3.6E-41 314.3 26.7 280 9-298 39-331 (333)
9 3v71_A PUF (pumilio/FBF) domai 100.0 5.8E-36 2E-40 313.7 23.6 281 11-299 49-379 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 1.4E-35 4.8E-40 313.0 24.9 284 9-299 56-400 (412)
11 3hjl_A Flagellar motor switch 52.7 1.8E+02 0.0063 28.7 17.0 31 213-243 195-225 (329)
12 4fhr_B Flagellar motor switch 37.8 80 0.0027 29.3 7.4 94 27-125 83-181 (216)
13 3pkr_A FLIG, flagellar motor s 31.9 1.6E+02 0.0056 28.4 8.8 120 4-125 118-238 (279)
14 2wx4_A DCP1, decapping protein 29.0 34 0.0012 23.6 2.3 25 462-486 15-39 (46)
15 2jtt_C Calcyclin-binding prote 24.1 57 0.0019 21.2 2.6 22 68-89 10-31 (35)
16 3hjl_A Flagellar motor switch 24.0 3E+02 0.01 27.1 9.3 95 26-125 195-294 (329)
17 2ion_A PDCD4, programmed cell 22.0 84 0.0029 27.4 4.3 57 182-242 14-70 (152)
18 2yvy_A MGTE, Mg2+ transporter 21.9 2.5E+02 0.0085 26.4 8.1 20 36-55 14-33 (278)
No 1
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=9.9e-45 Score=374.30 Aligned_cols=250 Identities=19% Similarity=0.278 Sum_probs=230.6
Q ss_pred HHHHHHHHHhchHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhhcCCHHHHHHHHHH
Q 009214 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISA 88 (540)
Q Consensus 9 lv~el~~~i~g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~~~~~e~~~~Il~~ 88 (540)
+.+.+++.++|++.++|.+|+|||+||++++++++++++.||+++.|++.+|++|+|||||+||+|++++++++..|+++
T Consensus 3 ~~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 82 (333)
T 3bwt_A 3 FADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82 (333)
T ss_dssp TTTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhccchhhHHHHHHhhC-CHHHHHHHHHHHHhhHHHhhcccCCCchhhHHHHHhhhhhhHHHHHHhHHHHHH
Q 009214 89 LHGHVASLLRHMVGSVVVEHAYQLG-NATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQ 167 (540)
Q Consensus 89 l~g~v~~L~~h~~gs~Vvq~ll~~~-~~~qr~~il~e~~g~~~~l~~~~~g~~~~~L~~il~~~~~k~~~i~~~~~~~iq 167 (540)
+.|++..|+.|+|||||+|++++.+ +++|+..+++++++....+++|. +|++++|
T Consensus 83 ~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~------------------------~gn~Viq 138 (333)
T 3bwt_A 83 SSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDL------------------------NGNHVIQ 138 (333)
T ss_dssp HGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTST------------------------THHHHHH
T ss_pred HHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCC------------------------cccHHHH
Confidence 9999999999999999999999975 68889999999999999999985 4567777
Q ss_pred HHHhhCCCchhhHHHHHHHHHhhCChhhHHHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Q 009214 168 PILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKV 247 (540)
Q Consensus 168 ~il~K~~~~~~i~h~~l~ey~~~~~~~~~~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk~~i~~L 247 (540)
++++ .++++.+..+++.+.++ +..|+++++||+|+++|+.++++++|+.|++++.+++..|
T Consensus 139 k~l~------------------~~~~~~~~~i~~~l~~~-~~~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L 199 (333)
T 3bwt_A 139 KCLQ------------------RLKPENFQFIFDAISDS-CIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKL 199 (333)
T ss_dssp HHHH------------------HSCHHHHHHHHHHHHHS-HHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHH
T ss_pred HHHH------------------HCCHHHHHHHHHHHHHH-HHHHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 7665 34677888999999988 6999999999999999999999999999999999999999
Q ss_pred HhCcChhHHHHHHHhccCchH--HHHHHHHHHHHHHHHHhHhCcChHHHHHHhcCC
Q 009214 248 AHDQCGSMVLLCIVSIVDDTK--LIAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301 (540)
Q Consensus 248 a~d~~G~~Vl~~ll~~~dDt~--l~~k~I~~eL~~~l~~L~~~kyGr~vll~lL~~ 301 (540)
++|+|||||||++++..+++. ..++.|++.+.+++.+|+.++||++|++++|..
T Consensus 200 ~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~ 255 (333)
T 3bwt_A 200 TLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKT 255 (333)
T ss_dssp HTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTS
T ss_pred hcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHcc
Confidence 999999999999999876543 235789999999999999999999999999863
No 2
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=3.2e-45 Score=383.14 Aligned_cols=245 Identities=21% Similarity=0.315 Sum_probs=229.8
Q ss_pred HHHHhchHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhhcCCHHHHHHHHHHHHHhH
Q 009214 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHV 93 (540)
Q Consensus 14 ~~~i~g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~~~~~e~~~~Il~~l~g~v 93 (540)
++.++|++.++|.+|+|||+||++++++++++|+.||++++|++.+|++|+||||||||+|++|+++++..|+++|.|++
T Consensus 26 l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~ 105 (369)
T 3k49_A 26 LKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNM 105 (369)
T ss_dssp GGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhHHHHHHhhCCHHHHHHHHHHHHhhHHHhhcccCCCchhhHHHHHhhhhhhHHHHHHhHHHHHHHHHhhC
Q 009214 94 ASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISKLGLQKASVLRHMASVIQPILEKG 173 (540)
Q Consensus 94 ~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~g~~~~l~~~~~g~~~~~L~~il~~~~~k~~~i~~~~~~~iq~il~K~ 173 (540)
..|+.|+|||+|+|++++.++++|+..+++++++....+++|.+ |++++|++++.
T Consensus 106 ~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~------------------------Gn~ViQ~~l~~- 160 (369)
T 3k49_A 106 KQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQN------------------------GNHVIQKAIET- 160 (369)
T ss_dssp HHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTT------------------------HHHHHHHHHHH-
T ss_pred HHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcc------------------------cchHHHHHHHh-
Confidence 99999999999999999999999999999999999999999854 56777777663
Q ss_pred CCchhhHHHHHHHHHhhCChhhHHHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhCcCh
Q 009214 174 IIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQCG 253 (540)
Q Consensus 174 ~~~~~i~h~~l~ey~~~~~~~~~~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk~~i~~La~d~~G 253 (540)
++++.+..+++.+.+. +..|++|++||+|+++|++++++++|+.|++++++++..|++|+||
T Consensus 161 -----------------~~~~~~~~i~~~~~~~-~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~G 222 (369)
T 3k49_A 161 -----------------IPIEKLPFILSSLTGH-IYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYG 222 (369)
T ss_dssp -----------------SCGGGCHHHHHHHTTT-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTH
T ss_pred -----------------CCHHHHHHHHHHHHHH-HHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 4566778889999988 6999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCchHH----HHHHHHHHHHHHHHHhHhCcChHHHHHHhcCC
Q 009214 254 SMVLLCIVSIVDDTKL----IAKIIIRELQSIIKELVMDKNGRRVLLQLLHP 301 (540)
Q Consensus 254 ~~Vl~~ll~~~dDt~l----~~k~I~~eL~~~l~~L~~~kyGr~vll~lL~~ 301 (540)
|||||++++..+++.. .++.|++.+.+++.+|+.++||++|++++|..
T Consensus 223 nyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~Ls~~k~gS~Vvek~l~~ 274 (369)
T 3k49_A 223 NYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILY 274 (369)
T ss_dssp HHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHh
Confidence 9999999999988753 36789999999999999999999999999975
No 3
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=3.4e-44 Score=372.92 Aligned_cols=278 Identities=18% Similarity=0.290 Sum_probs=254.9
Q ss_pred HHHHhchHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhhcCCHHHHHHHHHHHHHhH
Q 009214 14 LQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISALHGHV 93 (540)
Q Consensus 14 ~~~i~g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~~~~~e~~~~Il~~l~g~v 93 (540)
++.++|++.++|.+|+|||+||++++++++++|+.||+++.+++.+||+|+||||||||+|++|+++++..|++.+.|++
T Consensus 21 l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~ 100 (351)
T 3gvo_A 21 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHV 100 (351)
T ss_dssp GGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhHHHHHHhhCCHHHHHHHHHHHHhhHHHhhcccCCCchhhHHHHHh-hhhhhHHHHHHhHHHHHHHHHhh
Q 009214 94 ASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVIS-KLGLQKASVLRHMASVIQPILEK 172 (540)
Q Consensus 94 ~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~g~~~~l~~~~~g~~~~~L~~il~-~~~~k~~~i~~~~~~~iq~il~K 172 (540)
.+|+.|+|||+|||++++.++.+++..|++++++....+++|.+| +..++.+++ ..|+++..|++.+...+..+.
T Consensus 101 ~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~G--n~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls-- 176 (351)
T 3gvo_A 101 LPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNG--NHVVQKCIECVQPQSLQFIIDAFKGQVFVLS-- 176 (351)
T ss_dssp HHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTH--HHHHHHHHHHSCGGGTHHHHHHTTTTHHHHH--
T ss_pred HHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhh--hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999998 678899998 456777777777665554443
Q ss_pred CCCchhhHHHHHHHHHhhCChhhHHHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhCcC
Q 009214 173 GIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKGHIGKVAHDQC 252 (540)
Q Consensus 173 ~~~~~~i~h~~l~ey~~~~~~~~~~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk~~i~~La~d~~ 252 (540)
.+...++++..++..++++++..+++.+.+. +..|+++++|++|+++||+++++++|+.|++.+++++..|++|+|
T Consensus 177 ---~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~-~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~ 252 (351)
T 3gvo_A 177 ---THPYGCRVIQRILEHCTAEQTLPILEELHQH-TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKF 252 (351)
T ss_dssp ---TSTTHHHHHHHHHHHSCHHHHHHHHHHHHTT-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTT
T ss_pred ---hCcHhHHHHHHHHHHCCHHHHHHHHHHHhhh-HHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcH
Confidence 2345667888888899999999999999987 699999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhccCchHHHHHHHHHHHHH-------HHHHhHhCcChHHHHHHhcCC
Q 009214 253 GSMVLLCIVSIVDDTKLIAKIIIRELQS-------IIKELVMDKNGRRVLLQLLHP 301 (540)
Q Consensus 253 G~~Vl~~ll~~~dDt~l~~k~I~~eL~~-------~l~~L~~~kyGr~vll~lL~~ 301 (540)
|++||+++++..++.. ++.|+.||.. .+..|+.|+||++|++++|..
T Consensus 253 gs~Vvek~l~~~~~~~--r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~ 306 (351)
T 3gvo_A 253 ASNVVEKCVTHASRAE--RALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDM 306 (351)
T ss_dssp HHHHHHHHHHHSCHHH--HHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHH--HHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHh
Confidence 9999999999987765 5889999986 799999999999999988863
No 4
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=3.2e-40 Score=348.51 Aligned_cols=279 Identities=12% Similarity=0.142 Sum_probs=239.3
Q ss_pred HHHHH-hchHHhhhcCCChhHHHHhhhhcC-CHHHHHHHHHHHhHh---HHhhhcccchhHHHHHHhhcCCH-------H
Q 009214 13 ALQKM-KGKIPEIAGSHVSSRVLQTCVKYC-SQAERDAVFEELQPH---FLSLADNTYAVHLVKKMLDNASK-------K 80 (540)
Q Consensus 13 l~~~i-~g~i~~la~~~~gsRvlQ~llk~~-~~e~r~~I~~eL~~~---~~~L~~d~yg~~vvqkll~~~~~-------e 80 (540)
+.+.+ +|+++++|++|+|||+||++++++ ++++|+.||+++.++ +.+||+|+||||||||+|++|++ +
T Consensus 22 L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~ 101 (412)
T 3k62_A 22 LSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTK 101 (412)
T ss_dssp HHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHH
T ss_pred HHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHH
Confidence 55666 899999999999999999999997 999999999999885 89999999999999999999999 9
Q ss_pred HHHHHHHHHHHhHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHH--HhhHHHhhcccCCCchhhHHHHHhhh-hhhHHH
Q 009214 81 QLAGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL--YSTELQLFKNLVSIKESRLVDVISKL-GLQKAS 157 (540)
Q Consensus 81 ~~~~Il~~l~g~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~--~g~~~~l~~~~~g~~~~~L~~il~~~-~~k~~~ 157 (540)
++..|++.+.|++..|+.|+|||+|||++++.++++++..|++++ .+....+++|.+| +..++++++.. ++++..
T Consensus 102 q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~G--NhVIQK~Le~~~~~~~~~ 179 (412)
T 3k62_A 102 RQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNA--NHVIQKVVAVIPLKNWEF 179 (412)
T ss_dssp HHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTT--HHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccc--cHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999999999 5788999999998 68999999964 556666
Q ss_pred HHHhHH--HHHHHHHhhCCCchhhHHHHHHHHHhhCCh------------hhHH----HHHHHhhhhHHHHhccCcchhH
Q 009214 158 VLRHMA--SVIQPILEKGIIDHSIIHRVLMEYLSMADK------------SSAA----DIIQQLSGPLLVRMIHTRDGSK 219 (540)
Q Consensus 158 i~~~~~--~~iq~il~K~~~~~~i~h~~l~ey~~~~~~------------~~~~----~li~~L~~~~l~~L~~tk~Gs~ 219 (540)
|++.+. ..+..+. .+...++++..++.++++ +++. .+++.+..+ +..|+++++|++
T Consensus 180 I~~~~~~~~~~~~la-----~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~-~~~L~~dq~GNy 253 (412)
T 3k62_A 180 IVDFVATPEHLRQIC-----SDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNR-CQELATNEYANY 253 (412)
T ss_dssp HHHHHHSHHHHHHHH-----TSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHT-HHHHHHSTTTHH
T ss_pred HHHHHhcchhHHHHh-----cCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHH-HHHHhhCccccH
Confidence 666554 2222222 345566777777777653 3443 455666655 689999999999
Q ss_pred HHHHHHhhCCHHH-HHHHHH-HHHHHHHHHHhCcChhHHHHHHHhccCchHHHHHHHHHHHHH-----------HHHHhH
Q 009214 220 IGMLCVKHGSAKE-RKKIIK-GMKGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQS-----------IIKELV 286 (540)
Q Consensus 220 Vv~~~L~~~~~k~-Rk~Iik-~lk~~i~~La~d~~G~~Vl~~ll~~~dDt~l~~k~I~~eL~~-----------~l~~L~ 286 (540)
|++++|++++++. |+.|+. .+++++.+|++|+||++||+++|++.++.. ++.|+.||.. .+..|+
T Consensus 254 ViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~--r~~ii~ei~~~~~~~~~~~~~~l~~L~ 331 (412)
T 3k62_A 254 IIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLEL--LAEMMDEIFDGYIPHPDTGKDALDIMM 331 (412)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHH--HHHHHHHHHHSSCCCTTTCCCHHHHHH
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHH--HHHHHHHHHhhccCCccccchHHHHHh
Confidence 9999999998764 888887 599999999999999999999999987764 5889999985 488999
Q ss_pred hCcChHHHHHHhcCC
Q 009214 287 MDKNGRRVLLQLLHP 301 (540)
Q Consensus 287 ~~kyGr~vll~lL~~ 301 (540)
.|+||++|++++|.-
T Consensus 332 ~DqyGNYViQ~~L~~ 346 (412)
T 3k62_A 332 FHQFGNYVVQCMLTI 346 (412)
T ss_dssp HSTTHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHH
Confidence 999999999988873
No 5
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=4.6e-39 Score=334.30 Aligned_cols=281 Identities=17% Similarity=0.259 Sum_probs=254.9
Q ss_pred HHHHHHHHHHhchHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhhcCCHHHHHHHHH
Q 009214 8 RLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFIS 87 (540)
Q Consensus 8 klv~el~~~i~g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~~~~~e~~~~Il~ 87 (540)
.-.+.+|+++.+++.+|+.+++|++++|+++++|++++|..|++++.|++++|+.|+||++++|+++++++++++..|++
T Consensus 51 ~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~ 130 (351)
T 3gvo_A 51 AERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVK 130 (351)
T ss_dssp HHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHG
T ss_pred HHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHH
Confidence 34677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHHHhhHHHhhcccCCCchhhHHHHHh-hhhhhHHHHHHhHHHHH
Q 009214 88 ALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVIS-KLGLQKASVLRHMASVI 166 (540)
Q Consensus 88 ~l~g~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~g~~~~l~~~~~g~~~~~L~~il~-~~~~k~~~i~~~~~~~i 166 (540)
+|.|++..|+.|++|+||+|++++.++++++..|++.+.|....+..+..| ++.++.+++ ..++.+..+++.+...+
T Consensus 131 el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G--~~Vvq~~le~~~~~~~~~ii~~l~~~~ 208 (351)
T 3gvo_A 131 ELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG--CRVIQRILEHCTAEQTLPILEELHQHT 208 (351)
T ss_dssp GGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTH--HHHHHHHHHHSCHHHHHHHHHHHHTTH
T ss_pred HhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHh--HHHHHHHHHHCCHHHHHHHHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999988 889999999 45666777777766666
Q ss_pred HHHHhhCCCchhhHHHHHHHHHhhCChhhHHHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCHHHHHHHHHHHHH----
Q 009214 167 QPILEKGIIDHSIIHRVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKG---- 242 (540)
Q Consensus 167 q~il~K~~~~~~i~h~~l~ey~~~~~~~~~~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk~---- 242 (540)
..++. ...++ .++..++.+++|+.+..+++.+.++ +..|+++++||+|+++|++++++++|+.|++++.+
T Consensus 209 ~~L~~-d~~Gn----~ViQ~~l~~~~~~~~~~i~~~l~~~-~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~ 282 (351)
T 3gvo_A 209 EQLVQ-DQYGN----YVIQHVLEHGRPEDKSKIVSEIRGK-VLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDG 282 (351)
T ss_dssp HHHHT-STTHH----HHHHHHHHHSCHHHHHHHHHTTTTC-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEET
T ss_pred HhcCC-CchHH----HHHHHHHHhCchhhHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCC
Confidence 55553 23333 3444556678999999999999988 69999999999999999999999999999999885
Q ss_pred ---HHHHHHhCcChhHHHHHHHhccCchHHHHHHHHHHHHHHHHHhHhCcChHHHHHHh
Q 009214 243 ---HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVMDKNGRRVLLQL 298 (540)
Q Consensus 243 ---~i~~La~d~~G~~Vl~~ll~~~dDt~l~~k~I~~eL~~~l~~L~~~kyGr~vll~l 298 (540)
.+..|++|+|||||||++|+..+++. ++.|+..|.+++..|..++||++|+..+
T Consensus 283 ~~~~l~~l~~d~ygnyViq~~L~~~~~~~--r~~i~~~i~~~~~~L~~~~~g~~i~~kl 339 (351)
T 3gvo_A 283 PHSALYTMMKDQYANYVVQKMIDMAEPAQ--RKIIMHKIRPHITTLRKYTYGKHILAKL 339 (351)
T ss_dssp TEEHHHHHHHSTTHHHHHHHHHHHCCHHH--HHHHHHHHGGGHHHHTTSTTTHHHHHHH
T ss_pred CChHHHHccCCcchHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 79999999999999999999998876 5899999999999999999999998654
No 6
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=3.1e-39 Score=338.54 Aligned_cols=278 Identities=14% Similarity=0.193 Sum_probs=231.9
Q ss_pred HHHH-hchHHhhhcCCChhHHHHhhhhcCCHH-HHHHHHHHHh---HhHHhhhcccchhHHHHHHhhcCCHHHHHHHHHH
Q 009214 14 LQKM-KGKIPEIAGSHVSSRVLQTCVKYCSQA-ERDAVFEELQ---PHFLSLADNTYAVHLVKKMLDNASKKQLAGFISA 88 (540)
Q Consensus 14 ~~~i-~g~i~~la~~~~gsRvlQ~llk~~~~e-~r~~I~~eL~---~~~~~L~~d~yg~~vvqkll~~~~~e~~~~Il~~ 88 (540)
-+.+ +|++.++|.+|+|||+||+++++++++ .|+.||+++. +++.+||+|+||||+|||+|++|+++++..|+..
T Consensus 14 ~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~ 93 (382)
T 3v71_A 14 EDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQ 93 (382)
T ss_dssp HHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444 899999999999999999999998765 5899999986 7899999999999999999999999999899887
Q ss_pred -HHHhHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHHHh-hHHHhhcccCCCchhhHHHHHhhh-hhhHHHHHHhHH--
Q 009214 89 -LHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYS-TELQLFKNLVSIKESRLVDVISKL-GLQKASVLRHMA-- 163 (540)
Q Consensus 89 -l~g~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~g-~~~~l~~~~~g~~~~~L~~il~~~-~~k~~~i~~~~~-- 163 (540)
+.|++..|+.|+|||||+|++++.++.+++..|+.++.+ ....+++|.+| ++.++++++.. ++.+..|++.+.
T Consensus 94 ~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~G--nhVIQk~le~~~~~~~~~Ii~~~~~~ 171 (382)
T 3v71_A 94 MIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQIS--IHVIQRVVKQLPVDMWTFFVHFLSSG 171 (382)
T ss_dssp HHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTT--HHHHHHHHTTSCTTTSHHHHHHHHST
T ss_pred HhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCccc--ccHHHHHHHHCCHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999998 79999999998 67899999964 455666666553
Q ss_pred HHHHHHHhhCCCchhhHHHHHHHHHhhCChhh-------H----HHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCH--
Q 009214 164 SVIQPILEKGIIDHSIIHRVLMEYLSMADKSS-------A----ADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSA-- 230 (540)
Q Consensus 164 ~~iq~il~K~~~~~~i~h~~l~ey~~~~~~~~-------~----~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~-- 230 (540)
..+..+. .+...++++..++.++++++ + ..+++.+.++ ...|+++++|++|++++|+++++
T Consensus 172 ~~~~~la-----~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~-~~~L~~d~~GNyVIQ~iL~~~~~~e 245 (382)
T 3v71_A 172 DSLMAVC-----QDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRN-CYRLSSNEFANYVIQYVIKSSGIME 245 (382)
T ss_dssp THHHHHH-----HSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTT-HHHHHTSTTTHHHHHHHHTCCSTHH
T ss_pred cchHhHh-----cCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHhhCccccHHHHHHHhcCCCcH
Confidence 2222222 12334455555665554432 2 3456666666 58999999999999999999874
Q ss_pred HHHHHHHHH-HHHHHHHHHhCcChhHHHHHHHhccCchHHHHHHHHHHHHH-----------HHHHhHhCcChHHHHHHh
Q 009214 231 KERKKIIKG-MKGHIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQS-----------IIKELVMDKNGRRVLLQL 298 (540)
Q Consensus 231 k~Rk~Iik~-lk~~i~~La~d~~G~~Vl~~ll~~~dDt~l~~k~I~~eL~~-----------~l~~L~~~kyGr~vll~l 298 (540)
+.|..|+.. +.+++..|++|+||++||+++|.+.++.. ++.|+.||.. .+..|+.|+||++|++++
T Consensus 246 ~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~--r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~ 323 (382)
T 3v71_A 246 MYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPAL--LHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQM 323 (382)
T ss_dssp HHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHH--HHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHH--HHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHH
Confidence 568999975 99999999999999999999999987654 5899999974 789999999999999988
Q ss_pred cCC
Q 009214 299 LHP 301 (540)
Q Consensus 299 L~~ 301 (540)
|..
T Consensus 324 L~~ 326 (382)
T 3v71_A 324 ISI 326 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 7
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=2e-37 Score=324.02 Aligned_cols=278 Identities=15% Similarity=0.226 Sum_probs=240.6
Q ss_pred HHHHHHHHHhchHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhhcCCHHHHHHHHHH
Q 009214 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFISA 88 (540)
Q Consensus 9 lv~el~~~i~g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~~~~~e~~~~Il~~ 88 (540)
-.+.+++++.|++.+|+.+++|+++||++++++++++|+.|++++.|++.+|+.|+||++|+|+++++++++++..|+.+
T Consensus 57 ~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~e 136 (369)
T 3k49_A 57 EKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLE 136 (369)
T ss_dssp HHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHHHhhHHHhhcccCCCchhhHHHHHhh-hhhhHHHHHHhHHHHHH
Q 009214 89 LHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISK-LGLQKASVLRHMASVIQ 167 (540)
Q Consensus 89 l~g~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~g~~~~l~~~~~g~~~~~L~~il~~-~~~k~~~i~~~~~~~iq 167 (540)
+.+++..|+.|+||+||+|++++.++++++..|++.+.|....+..+..| ++.++.+++. .+..+..+++.+...+.
T Consensus 137 l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G--s~Vvq~~l~~~~~~~~~~i~~~l~~~~~ 214 (369)
T 3k49_A 137 LSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYG--CRVIQRLLEFGSSEDQESILNELKDFIP 214 (369)
T ss_dssp GTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTH--HHHHHHHHHHSCHHHHHHHHHTTTTCHH
T ss_pred HHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcc--CcHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 8899999995 45566667665544444
Q ss_pred HHHhhCCCchhhHHHHHHHHHhhCChhh------HHHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCHHHHHHHHHHHH
Q 009214 168 PILEKGIIDHSIIHRVLMEYLSMADKSS------AADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK 241 (540)
Q Consensus 168 ~il~K~~~~~~i~h~~l~ey~~~~~~~~------~~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk 241 (540)
.++. ...++ .++...+..+++.. +..+++.+.++ +..|+++|+||+|+++||.++++++|+.|++++.
T Consensus 215 ~L~~-d~~Gn----yViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~-~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~~l~ 288 (369)
T 3k49_A 215 YLIQ-DQYGN----YVIQYVLQQDQFTNKEMVDIKQEIIETVANN-VVEYSKHKFASNVVEKSILYGSKNQKDLIISKIL 288 (369)
T ss_dssp HHHH-STTHH----HHHHHHHTCCTTSCHHHHHHHHHHHHHHHTT-HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHTTTS
T ss_pred HHhc-CCcHH----HHHHHHHhcCCchhhhhHhHHHHHHHHHHHH-HHHHHhhhHhhHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4332 22222 33334445555543 57888889888 6999999999999999999999999999999975
Q ss_pred H-------------HHHHHHhCcChhHHHHHHHhccCchHHHHHHHHHHHHHHHHHhHh-CcChHHHHH
Q 009214 242 G-------------HIGKVAHDQCGSMVLLCIVSIVDDTKLIAKIIIRELQSIIKELVM-DKNGRRVLL 296 (540)
Q Consensus 242 ~-------------~i~~La~d~~G~~Vl~~ll~~~dDt~l~~k~I~~eL~~~l~~L~~-~kyGr~vll 296 (540)
+ .+..|++|+|||||||++|+++++.. ++.++.+|.+++..|.. +.||++++-
T Consensus 289 ~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~--~~~l~~~i~p~l~~L~~~~~~G~~~~~ 355 (369)
T 3k49_A 289 PRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEG--KKLIVIAIRAYLDKLNKSNSLGNRHLA 355 (369)
T ss_dssp CSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHCC--CCCCCH
T ss_pred ccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHhccccCcchHHH
Confidence 3 47899999999999999999998886 58999999999999986 599988763
No 8
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.1e-36 Score=314.25 Aligned_cols=280 Identities=12% Similarity=0.177 Sum_probs=241.8
Q ss_pred HHHHHHHHHhchHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhhcC-CHHHHHHHHH
Q 009214 9 LISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLDNA-SKKQLAGFIS 87 (540)
Q Consensus 9 lv~el~~~i~g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~~~-~~e~~~~Il~ 87 (540)
-.+.+++++.|++.+|+.+++|++++|++++++++++|..|++++.|++.+|+.|+||++++|++++++ ++++++.|++
T Consensus 39 ~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~ 118 (333)
T 3bwt_A 39 AADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVD 118 (333)
T ss_dssp HHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999998 4778899999
Q ss_pred HHHHhHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHHHhhHHHhhcccCCCchhhHHHHHhh-hhhhHHHHHHhHHHHH
Q 009214 88 ALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELYSTELQLFKNLVSIKESRLVDVISK-LGLQKASVLRHMASVI 166 (540)
Q Consensus 88 ~l~g~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~g~~~~l~~~~~g~~~~~L~~il~~-~~~k~~~i~~~~~~~i 166 (540)
+|++++..|+.|+||+||+|++++.++++++..|++.+.|....+..+..| ++.++.+++. .++.+..+++.+...+
T Consensus 119 el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G--s~Vvq~~l~~~~~~~~~~l~~el~~~~ 196 (333)
T 3bwt_A 119 SLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHG--CCVLQRCLDHGTTEQCDNLCDKLLALV 196 (333)
T ss_dssp HHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTH--HHHHHHHHHHCCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchh--HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 7889999984 4566777776665555
Q ss_pred HHHHhhCCCchhhHHHHHHHHHhhCCh----hhHHHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCHHHHHHHHHHHH-
Q 009214 167 QPILEKGIIDHSIIHRVLMEYLSMADK----SSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMK- 241 (540)
Q Consensus 167 q~il~K~~~~~~i~h~~l~ey~~~~~~----~~~~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk- 241 (540)
..+. +...++.+++.++. .+++ ..+..+++.+.++ +..|+++++||+|+++|+++++ .|+.++.++.
T Consensus 197 ~~L~-~d~~GnyVvQ~~L~----~~~~~~~~~~~~~ii~~l~~~-~~~Ls~~k~gs~Vvek~l~~~~--~~~~ii~ell~ 268 (333)
T 3bwt_A 197 DKLT-LDPFGNYVVQYIIT----KEAEKNKYDYTHKIVHLLKPR-AIELSIHKFGSNVIEKILKTAI--VSEPMILEILN 268 (333)
T ss_dssp HHHH-TSTTHHHHHHHHHH----HHHHHTCCSHHHHHHHHHGGG-HHHHHTSTTHHHHHHHHHTSHH--HHHHHHHHHHH
T ss_pred HHHh-cCChHHHHHHHHHH----hCCccccchhHHHHHHHHHHH-HHHHHcccHHHHHHHHHHcccc--hhHHHHHHHHh
Confidence 5544 33445555555443 3333 2367899999988 6999999999999999999764 4677777754
Q ss_pred ----HHHHHHHhCcChhHHHHHHHhccCch-HHHHHHHHHHHHHHH-HHhHhCcChHHHHHHh
Q 009214 242 ----GHIGKVAHDQCGSMVLLCIVSIVDDT-KLIAKIIIRELQSII-KELVMDKNGRRVLLQL 298 (540)
Q Consensus 242 ----~~i~~La~d~~G~~Vl~~ll~~~dDt-~l~~k~I~~eL~~~l-~~L~~~kyGr~vll~l 298 (540)
+++..|+.|+|||||+|++|++++|+ ..+++.++++|.+++ .+|..++|||+++.+|
T Consensus 269 ~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~~~~G~~i~~~l 331 (333)
T 3bwt_A 269 NGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPHGKRIIGML 331 (333)
T ss_dssp TTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGGSHHHHHHHTTS
T ss_pred ccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcCCCCHHHHHHHh
Confidence 68999999999999999999999987 457899999999998 8999999999998643
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=5.8e-36 Score=313.70 Aligned_cols=281 Identities=12% Similarity=0.152 Sum_probs=230.5
Q ss_pred HHHHHHHh---chHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHH-HhHhHHhhhcccchhHHHHHHhhcCCHHHHHHHH
Q 009214 11 SEALQKMK---GKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEE-LQPHFLSLADNTYAVHLVKKMLDNASKKQLAGFI 86 (540)
Q Consensus 11 ~el~~~i~---g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~e-L~~~~~~L~~d~yg~~vvqkll~~~~~e~~~~Il 86 (540)
..+|+++. +++.+|+.+++|+++||+++++|++++|..++.+ ++|++..|+.|+||++++||++++++.+++..|+
T Consensus 49 ~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li 128 (382)
T 3v71_A 49 KAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLI 128 (382)
T ss_dssp HHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHH
Confidence 34666664 6799999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred HHHHH-hHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHHH--hhHHHhhcccCCCchhhHHHHHhhhh-hh-------H
Q 009214 87 SALHG-HVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY--STELQLFKNLVSIKESRLVDVISKLG-LQ-------K 155 (540)
Q Consensus 87 ~~l~g-~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~--g~~~~l~~~~~g~~~~~L~~il~~~~-~k-------~ 155 (540)
.++.+ ++..|+.|++|+||||++++..+++++..|+++++ ++...++.+..| +..++.+++..+ +. |
T Consensus 129 ~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~G--c~VlQ~~le~~~~~~k~~~~~~r 206 (382)
T 3v71_A 129 QELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYG--CRLVQQVIDRLAENPKLPCFKFR 206 (382)
T ss_dssp HHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTH--HHHHHHHHHHHTCCSSSTTHHHH
T ss_pred HHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchh--hHHHHHHHHhCCHhhhhhhhhHH
Confidence 99998 89999999999999999999999999999999998 588999999998 899999999432 21 1
Q ss_pred HHHH----HhHHHHHHHHHhhCCCchhhHHHHHHHHHhhCCh--hhHHHHHHH-hhhhHHHHhccCcchhHHHHHHHhhC
Q 009214 156 ASVL----RHMASVIQPILEKGIIDHSIIHRVLMEYLSMADK--SSAADIIQQ-LSGPLLVRMIHTRDGSKIGMLCVKHG 228 (540)
Q Consensus 156 ~~i~----~~~~~~iq~il~K~~~~~~i~h~~l~ey~~~~~~--~~~~~li~~-L~~~~l~~L~~tk~Gs~Vv~~~L~~~ 228 (540)
..++ ..+......+. ....++.+++ .++..+++ ..+..+|+. +.++ +..|+++|+||+|+++|++++
T Consensus 207 ~~~l~~l~~~I~~~~~~L~-~d~~GNyVIQ----~iL~~~~~~e~~r~~ii~~~l~~~-~~~Ls~~k~gS~Vvek~l~~~ 280 (382)
T 3v71_A 207 IQLLHSLMTCIVRNCYRLS-SNEFANYVIQ----YVIKSSGIMEMYRDTIIDKCLLRN-LLSMSQDKYASHVIEGAFLFA 280 (382)
T ss_dssp HHHHHHHHHHHHTTHHHHH-TSTTTHHHHH----HHHTCCSTHHHHHHHHHHHTTTTC-HHHHTTSTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHh-hCccccHHHH----HHHhcCCCcHHHHHHHHHHHHHHH-HHHHhcCchHhHHHHHHHHhC
Confidence 1111 11111111111 1222332222 23344443 457888975 8887 699999999999999999999
Q ss_pred CHHHHHHHHHHHHH-----------HHHHHHhCcChhHHHHHHHhccCchH-----------------HHHHHHHHHHHH
Q 009214 229 SAKERKKIIKGMKG-----------HIGKVAHDQCGSMVLLCIVSIVDDTK-----------------LIAKIIIRELQS 280 (540)
Q Consensus 229 ~~k~Rk~Iik~lk~-----------~i~~La~d~~G~~Vl~~ll~~~dDt~-----------------l~~k~I~~eL~~ 280 (540)
++++|+.|++++.+ ++..|++|+|||||||++|++++|+. ...+.|++.+.+
T Consensus 281 ~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 360 (382)
T 3v71_A 281 PPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQ 360 (382)
T ss_dssp CHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHH
Confidence 99999999999863 79999999999999999999998742 124689999999
Q ss_pred HHHHhHhCcChHHHHHHhc
Q 009214 281 IIKELVMDKNGRRVLLQLL 299 (540)
Q Consensus 281 ~l~~L~~~kyGr~vll~lL 299 (540)
++..|...+||++++..|.
T Consensus 361 ~~~~l~~~~~Gk~i~~~l~ 379 (382)
T 3v71_A 361 HASRLERFSSGKKIIDSVM 379 (382)
T ss_dssp HHHHHTTSHHHHHHHHHHH
T ss_pred HHHHhhhCCchHHHHHHHH
Confidence 9999999999999997653
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.4e-35 Score=313.01 Aligned_cols=284 Identities=13% Similarity=0.164 Sum_probs=237.7
Q ss_pred HHHHHHHHHhch---HHhhhcCCChhHHHHhhhhcCCH-------HHHHHHHHHHhHhHHhhhcccchhHHHHHHhhcCC
Q 009214 9 LISEALQKMKGK---IPEIAGSHVSSRVLQTCVKYCSQ-------AERDAVFEELQPHFLSLADNTYAVHLVKKMLDNAS 78 (540)
Q Consensus 9 lv~el~~~i~g~---i~~la~~~~gsRvlQ~llk~~~~-------e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~~~~ 78 (540)
..+.+|+++.++ +.+|+.+++|+++||+++++|++ ++|..|++.+.|++++|+.|+||++++||++++++
T Consensus 56 ~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~ 135 (412)
T 3k62_A 56 QKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMD 135 (412)
T ss_dssp HHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCC
Confidence 456789999875 89999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--HHhHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHHH--hhHHHhhcccCCCchhhHHHHHhhhh--
Q 009214 79 KKQLAGFISAL--HGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVELY--STELQLFKNLVSIKESRLVDVISKLG-- 152 (540)
Q Consensus 79 ~e~~~~Il~~l--~g~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~~--g~~~~l~~~~~g~~~~~L~~il~~~~-- 152 (540)
++++..|++++ .+++..|+.|++|+||||++++.++++++..|++.+. ++...+..+..| ++.++++++..+
T Consensus 136 ~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~G--crVvQk~le~~~~~ 213 (412)
T 3k62_A 136 LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYG--CRVVQTIIEKLTAD 213 (412)
T ss_dssp HHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHH--HHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcch--HHHHHHHHHhcCcc
Confidence 99999999999 7999999999999999999999999999999999998 588899999988 899999999432
Q ss_pred -----------hhHHHHHHhH-HHHHHHHHh--hCCCchhhHHHHHHHHHhhCChh-hHHHHHHH-hhhhHHHHhccCcc
Q 009214 153 -----------LQKASVLRHM-ASVIQPILE--KGIIDHSIIHRVLMEYLSMADKS-SAADIIQQ-LSGPLLVRMIHTRD 216 (540)
Q Consensus 153 -----------~k~~~i~~~~-~~~iq~il~--K~~~~~~i~h~~l~ey~~~~~~~-~~~~li~~-L~~~~l~~L~~tk~ 216 (540)
++|..+++.+ ..++..+.. ....++.+++.+ +.++.++ .+..+++. +.++ +..|+++|+
T Consensus 214 ~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~i----L~~g~~~~~r~~ii~~~l~~~-~~~LS~~Kf 288 (412)
T 3k62_A 214 SMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHI----VSNDDLAVYRECIIEKCLMRN-LLSLSQEKF 288 (412)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHH----HHCGGGHHHHHHHHHHHTTTC-HHHHHTSTT
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHH----HhcCCchhHHHHHHHHHHHHH-HHHHhcccH
Confidence 3444333322 222222111 223344333332 3344554 47788874 8888 699999999
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHH-----------HHHHHHhCcChhHHHHHHHhccCchHHH---------------
Q 009214 217 GSKIGMLCVKHGSAKERKKIIKGMKG-----------HIGKVAHDQCGSMVLLCIVSIVDDTKLI--------------- 270 (540)
Q Consensus 217 Gs~Vv~~~L~~~~~k~Rk~Iik~lk~-----------~i~~La~d~~G~~Vl~~ll~~~dDt~l~--------------- 270 (540)
||+|+++||.++++++|+.|++++.+ .+..|++|+|||||||++|++++|++.-
T Consensus 289 gSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~ 368 (412)
T 3k62_A 289 ASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISF 368 (412)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHhcCCchHHHHHHHHHHccccccchhhccccchhhhhhh
Confidence 99999999999999999999999874 5899999999999999999999887321
Q ss_pred ---HHHHHHHHHHHHHHhHhCcChHHHHHHhc
Q 009214 271 ---AKIIIRELQSIIKELVMDKNGRRVLLQLL 299 (540)
Q Consensus 271 ---~k~I~~eL~~~l~~L~~~kyGr~vll~lL 299 (540)
.+.++..+.++...|...+||++|+.+|-
T Consensus 369 ~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l~ 400 (412)
T 3k62_A 369 QDWLKKLHSRVTKERHRLSRFSSGKKMIETLA 400 (412)
T ss_dssp HHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccHHHHHHH
Confidence 35788999999999999999999997663
No 11
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=52.65 E-value=1.8e+02 Score=28.72 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=27.0
Q ss_pred cCcchhHHHHHHHhhCCHHHHHHHHHHHHHH
Q 009214 213 HTRDGSKIGMLCVKHGSAKERKKIIKGMKGH 243 (540)
Q Consensus 213 ~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk~~ 243 (540)
....|...+-.+|.+-+....+.|+..+..+
T Consensus 195 ~~~gG~~~vA~ILN~~d~~~e~~il~~L~~~ 225 (329)
T 3hjl_A 195 LKLEGTAVAAELLNTLDKETRELILQSIGQE 225 (329)
T ss_dssp CCCCHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 3578899999999999999999999998865
No 12
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=37.76 E-value=80 Score=29.31 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=54.4
Q ss_pred CCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhh-----cCCHHHHHHHHHHHHHhHHHHHhccc
Q 009214 27 SHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLD-----NASKKQLAGFISALHGHVASLLRHMV 101 (540)
Q Consensus 27 ~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~-----~~~~e~~~~Il~~l~g~v~~L~~h~~ 101 (540)
+..|.+.+=.++.+.+...++.|++.|..+=.+|+. -+-.+||. .-++...+.++.++-....-++..--
T Consensus 83 ~~gG~~~~A~IlN~~~~~~e~~il~~L~~~d~ela~-----~I~~~mF~Fedl~~ld~~~iq~llr~v~~~~L~~ALKga 157 (216)
T 4fhr_B 83 KVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELAD-----EIRRRMFVFEDILKLDDRSIQLVLREVDTRDLALALKGA 157 (216)
T ss_dssp --CSHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHH-----HHHHHHSCGGGGGGSCHHHHHHHHTTSCHHHHHHHHTTS
T ss_pred cCCcHHHHHHHHHcCChhHHHHHHHHHHhcCHHHHH-----HHHHHhcCHHHHhCCCHHHHHHHHHhCCHHHHHHHHcCC
Confidence 445777888888888888888888888764333322 22222222 23444555555555555444444444
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHH
Q 009214 102 GSVVVEHAYQLGNATQKQELLVEL 125 (540)
Q Consensus 102 gs~Vvq~ll~~~~~~qr~~il~e~ 125 (540)
.--+-+++|...+...+..+-.++
T Consensus 158 ~~e~~e~il~nmS~Raa~~l~ee~ 181 (216)
T 4fhr_B 158 SDELKEKIFKNMSKRAAALLKDEL 181 (216)
T ss_dssp CHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445666777766666555555544
No 13
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=31.94 E-value=1.6e+02 Score=28.36 Aligned_cols=120 Identities=8% Similarity=0.030 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhchHHhhhcCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccch-hHHHHHHhhcCCHHHH
Q 009214 4 FLLIRLISEALQKMKGKIPEIAGSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYA-VHLVKKMLDNASKKQL 82 (540)
Q Consensus 4 ~~l~klv~el~~~i~g~i~~la~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg-~~vvqkll~~~~~e~~ 82 (540)
+++..+=.-+-+.+.+.... ..+..|.+.+=.++.+-+....+.|++.|...=.+|+..--. -|+..-++ .-++...
T Consensus 118 ~~l~~le~~L~~~l~~~~~~-~~~~gG~~~vA~ILN~~d~~~e~~iL~~L~~~dpelAe~Ir~~MF~FeDl~-~lddr~i 195 (279)
T 3pkr_A 118 QVVKRVSTVLENKLESLTSY-KIEVGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLAGAIKEMMFTFEDIV-KLDNFAI 195 (279)
T ss_dssp HHHHHHHHHHHHHHHTCC----CCCCSHHHHHHHHHTSCHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGGG-GSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc-ccccCcHHHHHHHHHcCChHHHHHHHHHHHhhCHHHHHHHHHhccCHHHHh-cCCHHHH
Confidence 34444444444444443333 567788888889999999999999998887543333322110 12222222 3455567
Q ss_pred HHHHHHHHHhHHHHHhccchhhHHHHHHhhCCHHHHHHHHHHH
Q 009214 83 AGFISALHGHVASLLRHMVGSVVVEHAYQLGNATQKQELLVEL 125 (540)
Q Consensus 83 ~~Il~~l~g~v~~L~~h~~gs~Vvq~ll~~~~~~qr~~il~e~ 125 (540)
+.|+.++-....-++.---.--+-+++|...+......+-.++
T Consensus 196 q~llreV~~~~L~~ALKGa~~elrekil~nmS~Raa~~l~eel 238 (279)
T 3pkr_A 196 REILKVADKKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEM 238 (279)
T ss_dssp HHHHHHSCHHHHHHHTTTSCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777777666666665554555667777777766665655554
No 14
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=29.04 E-value=34 Score=23.60 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=20.1
Q ss_pred hHHHHHHHhcCcchHHHHHHHhchh
Q 009214 462 SRTIRKLVMDCPKFASTLWKNALKG 486 (540)
Q Consensus 462 ~r~lk~li~~~~~f~~~l~~~~~~~ 486 (540)
--+|.-||++++.|..+|++.|+..
T Consensus 15 ~qal~hLiknD~~Fl~~iHeAYl~s 39 (46)
T 2wx4_A 15 VQAFTYLIQNDKEFANKLHKAYLNG 39 (46)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 3466679999999999999988654
No 15
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=24.11 E-value=57 Score=21.18 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=12.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHH
Q 009214 68 HLVKKMLDNASKKQLAGFISAL 89 (540)
Q Consensus 68 ~vvqkll~~~~~e~~~~Il~~l 89 (540)
.++++|...+++++|..|.+++
T Consensus 10 ~~fk~iY~~gddd~kram~KS~ 31 (35)
T 2jtt_C 10 NVLKKIYEDGDDDMKRTINKAW 31 (35)
T ss_dssp HHHHHHHTTCCSSHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4555566666666666555554
No 16
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=24.03 E-value=3e+02 Score=27.11 Aligned_cols=95 Identities=7% Similarity=0.085 Sum_probs=54.3
Q ss_pred cCCChhHHHHhhhhcCCHHHHHHHHHHHhHhHHhhhcccchhHHHHHHhh-----cCCHHHHHHHHHHHHHhHHHHHhcc
Q 009214 26 GSHVSSRVLQTCVKYCSQAERDAVFEELQPHFLSLADNTYAVHLVKKMLD-----NASKKQLAGFISALHGHVASLLRHM 100 (540)
Q Consensus 26 ~~~~gsRvlQ~llk~~~~e~r~~I~~eL~~~~~~L~~d~yg~~vvqkll~-----~~~~e~~~~Il~~l~g~v~~L~~h~ 100 (540)
.+..|.+.+=.++.+-+....+.|++.|..+=.+|+. -+-.+||. .-++...+.|+.++-....-++..-
T Consensus 195 ~~~gG~~~vA~ILN~~d~~~e~~il~~L~~~dpela~-----~Ir~~MF~Fedl~~lddr~iq~llrev~~~~L~~ALKg 269 (329)
T 3hjl_A 195 LKLEGTAVAAELLNTLDKETRELILQSIGQEDPLLEE-----RIREKMFTFEDIRKLSDRDIIEILKVVDKNTLMIALLG 269 (329)
T ss_dssp CCCCHHHHHHHHHHHSCHHHHHHHHHHHHHHCHHHHH-----HHHHHHSCGGGGGGSCHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cccccHHHHHHHHhcCChHHHHHHHHHHHHhCHHHHH-----HHHHHhcCHHHHhCCCHHHHHHHHHhCCHHHHHHHHcC
Confidence 4578888888899998888888888888764333322 22223332 2234445555555544444444333
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHH
Q 009214 101 VGSVVVEHAYQLGNATQKQELLVEL 125 (540)
Q Consensus 101 ~gs~Vvq~ll~~~~~~qr~~il~e~ 125 (540)
-.--+-+++|...+......+-.++
T Consensus 270 a~~elrekil~nmS~Raa~~l~eel 294 (329)
T 3hjl_A 270 APEDIKQKFLSNMSKRAAKLFLEDM 294 (329)
T ss_dssp SCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3334556666666655555554444
No 17
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.99 E-value=84 Score=27.38 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHHhhCChhhHHHHHHHhhhhHHHHhccCcchhHHHHHHHhhCCHHHHHHHHHHHHH
Q 009214 182 RVLMEYLSMADKSSAADIIQQLSGPLLVRMIHTRDGSKIGMLCVKHGSAKERKKIIKGMKG 242 (540)
Q Consensus 182 ~~l~ey~~~~~~~~~~~li~~L~~~~l~~L~~tk~Gs~Vv~~~L~~~~~k~Rk~Iik~lk~ 242 (540)
.++.+|+...+.++....++.|..++ .|+..-..++...+...+...|..+.+-|..
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~----f~~e~V~~~i~~alE~~~~~~re~~~~LL~~ 70 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPH----FHHELVYEAIVMVLESTGESAFKMILDLLKS 70 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGG----GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCc----chHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 56789999888777777777665332 2333444666666666556677766665553
No 18
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=21.88 E-value=2.5e+02 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=9.8
Q ss_pred hhhhcCCHHHHHHHHHHHhH
Q 009214 36 TCVKYCSQAERDAVFEELQP 55 (540)
Q Consensus 36 ~llk~~~~e~r~~I~~eL~~ 55 (540)
.++...++.....++.++.+
T Consensus 14 ~~l~~~~~~~~~~~l~~l~~ 33 (278)
T 2yvy_A 14 EALQEGDTRALREVLEEIHP 33 (278)
T ss_dssp HHHHHTCHHHHHHHHHHCCH
T ss_pred HHHHcCCHHHHHHHHHhCCH
Confidence 34444455555555555433
Done!