BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009215
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 387 AILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSP 441
ILQ +K L + + A+ NGPF L R + Y+ AI D E + + +P
Sbjct: 95 GILQLLKDLRSNKIKIALASASKNGPFLLER-MNLTGYFDAIADPAEVAASKPAP 148
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 387 AILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSP 441
ILQ +K L + + A+ NGPF L R + Y+ AI D E + + +P
Sbjct: 95 GILQLLKDLRSNKIKIALASASKNGPFLLER-MNLTGYFDAIADPAEVAASKPAP 148
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 387 AILQAIKRLNPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSP 441
ILQ +K L + + A+ NGPF L R + Y+ AI D E + + +P
Sbjct: 95 GILQLLKDLRSNKIKIALASASKNGPFLLER-MNLTGYFDAIADPAEVAASKPAP 148
>pdb|1JMC|A Chain A, Single Stranded Dna-Binding Domain Of Human Replication
Protein A Bound To Single Stranded Dna, Rpa70 Subunit,
Residues 183-420
Length = 246
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 28 ARVEQEQ--REWEETMNELELLSPYHEDAITSTSQDLAASEVDEFVDSFINMDHEDKDDD 85
ARV + R W + E +L S + S ++ A+ +E VD F +
Sbjct: 25 ARVTNKSQIRTWSNSRGEGKLFSL----ELVDESGEIRATAFNEQVDKFFPL-------- 72
Query: 86 REINK----SPALADHEAETFSMVNDGY----GDQVSMMIEGNDHHLETMSIDFSGED 135
E+NK S + F+ V + Y ++ S+M +DHHL T+ DF+G D
Sbjct: 73 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGID 130
>pdb|1FGU|A Chain A, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
pdb|1FGU|B Chain B, Ssdna-Binding Domain Of The Large Subunit Of Replication
Protein A
Length = 252
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 28 ARVEQEQ--REWEETMNELELLSPYHEDAITSTSQDLAASEVDEFVDSFINMDHEDKDDD 85
ARV + R W + E +L S + S ++ A+ +E VD F +
Sbjct: 21 ARVTNKSQIRTWSNSRGEGKLFSL----ELVDESGEIRATAFNEQVDKFFPL-------- 68
Query: 86 REINK----SPALADHEAETFSMVNDGY----GDQVSMMIEGNDHHLETMSIDFSGED 135
E+NK S + F+ V + Y ++ S+M +DHHL T+ DF+G D
Sbjct: 69 IEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDDHHLPTVQFDFTGID 126
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 223 ANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISF--GFMAANEAIRQAAQGKDSLHII 280
NGT G P ++ EEK+E + VY T I F G + ++AIR A KD I+
Sbjct: 39 VNGTTGLG----PSLSPEEKLENLKAVYDVTNKIIFQVGGLNLDDAIRLAKLSKD-FDIV 93
Query: 281 DLGMERTLQWPSL 293
+ +P +
Sbjct: 94 GIASYAPYYYPRM 106
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 223 ANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISF--GFMAANEAIRQAAQGKDSLHII 280
NGT G P ++ EEK+E + VY T I F G + ++AIR A KD I+
Sbjct: 40 VNGTTGLG----PSLSPEEKLENLKAVYDVTNKIIFQVGGLNLDDAIRLAKLSKD-FDIV 94
Query: 281 DLGMERTLQWPSL 293
+ +P +
Sbjct: 95 GIASYAPYYYPRM 107
>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
pdb|2YDA|B Chain B, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
Length = 294
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 218 LQNINANGTFTGGAMDVPLITREEKMEAFQLVYQTTPYISF--GFMAANEAIRQAAQGKD 275
+ + NGT G P ++ EEK+E + VY T I F G + ++AIR A KD
Sbjct: 35 IDKLFVNGTTGLG----PSLSPEEKLENLKAVYDVTNKIIFQVGGLNLDDAIRLAKLSKD 90
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKR 394
NL++RE ALF +S K V G++KA+L KR
Sbjct: 108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKR 145
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKR 394
NL++RE ALF +S K V G++KA+L KR
Sbjct: 108 NLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKR 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,211,155
Number of Sequences: 62578
Number of extensions: 584488
Number of successful extensions: 1447
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 17
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)