Query 009215
Match_columns 540
No_of_seqs 125 out of 700
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 21:49:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 3E-107 6E-112 857.3 39.0 366 163-533 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.5 0.0078 1.7E-07 60.4 17.6 192 250-488 33-226 (247)
3 TIGR00740 methyltransferase, p 95.9 0.73 1.6E-05 45.7 18.3 106 275-403 53-159 (239)
4 TIGR02752 MenG_heptapren 2-hep 95.7 0.81 1.7E-05 44.8 17.2 180 265-490 35-216 (231)
5 TIGR02716 C20_methyl_CrtF C-20 94.6 0.79 1.7E-05 47.3 14.1 118 264-407 138-257 (306)
6 PRK06202 hypothetical protein; 94.3 0.84 1.8E-05 45.1 13.0 115 265-403 50-165 (232)
7 PLN02233 ubiquinone biosynthes 92.5 11 0.00023 38.3 18.0 132 264-418 62-194 (261)
8 PF13489 Methyltransf_23: Meth 92.3 0.91 2E-05 41.0 9.0 98 273-408 20-119 (161)
9 PLN02336 phosphoethanolamine N 90.9 15 0.00033 40.2 18.3 115 263-404 254-368 (475)
10 PF13847 Methyltransf_31: Meth 90.5 2.5 5.3E-05 38.8 10.0 107 274-403 2-108 (152)
11 COG2226 UbiE Methylase involve 90.2 23 0.0005 36.1 18.0 190 253-489 28-221 (238)
12 TIGR00477 tehB tellurite resis 90.2 2 4.3E-05 41.6 9.5 112 262-401 17-129 (195)
13 PLN02336 phosphoethanolamine N 89.6 4.2 9.2E-05 44.6 12.6 137 265-431 27-172 (475)
14 PF12847 Methyltransf_18: Meth 89.5 2.1 4.6E-05 36.5 8.2 105 278-404 4-110 (112)
15 PF13649 Methyltransf_25: Meth 89.5 1.3 2.8E-05 37.8 6.7 97 279-397 1-99 (101)
16 PRK08317 hypothetical protein; 89.1 18 0.00039 34.7 15.2 44 267-316 11-54 (241)
17 PLN02585 magnesium protoporphy 88.4 11 0.00024 39.7 14.2 99 275-403 144-248 (315)
18 PRK12335 tellurite resistance 86.7 6 0.00013 40.6 10.8 96 278-401 123-219 (287)
19 PRK00216 ubiE ubiquinone/menaq 86.1 34 0.00073 33.0 17.3 44 267-316 43-86 (239)
20 PRK14103 trans-aconitate 2-met 86.1 6.2 0.00013 39.6 10.3 106 266-404 20-125 (255)
21 PTZ00098 phosphoethanolamine N 86.1 35 0.00077 34.7 15.9 116 261-403 38-154 (263)
22 PRK11207 tellurite resistance 85.3 8.4 0.00018 37.3 10.5 113 263-403 18-132 (197)
23 PLN02396 hexaprenyldihydroxybe 85.1 14 0.00031 39.1 12.8 99 277-404 133-234 (322)
24 PF01209 Ubie_methyltran: ubiE 85.0 5.1 0.00011 40.3 9.1 180 266-491 38-219 (233)
25 TIGR03438 probable methyltrans 83.2 18 0.00039 37.6 12.5 122 266-407 56-179 (301)
26 TIGR01934 MenG_MenH_UbiE ubiqu 82.3 47 0.001 31.6 17.1 48 263-316 27-74 (223)
27 PF08241 Methyltransf_11: Meth 81.3 7.6 0.00017 31.4 7.3 93 280-402 1-94 (95)
28 TIGR03587 Pse_Me-ase pseudamin 79.9 22 0.00048 34.9 11.2 100 278-407 46-145 (204)
29 PLN02244 tocopherol O-methyltr 79.8 32 0.00069 36.4 13.1 103 275-403 118-221 (340)
30 PF09243 Rsm22: Mitochondrial 79.6 14 0.00031 38.0 10.1 139 259-422 13-156 (274)
31 TIGR02072 BioC biotin biosynth 79.0 55 0.0012 31.4 13.6 46 264-316 20-68 (240)
32 TIGR02021 BchM-ChlM magnesium 78.9 19 0.00042 35.0 10.4 116 258-403 36-156 (219)
33 PRK11036 putative S-adenosyl-L 75.8 24 0.00051 35.4 10.3 113 265-403 35-147 (255)
34 PRK01683 trans-aconitate 2-met 75.3 31 0.00067 34.4 11.0 112 263-405 19-130 (258)
35 PRK09489 rsmC 16S ribosomal RN 74.1 38 0.00082 36.2 11.8 118 264-405 185-303 (342)
36 smart00138 MeTrc Methyltransfe 73.0 6.1 0.00013 40.4 5.3 45 273-317 97-143 (264)
37 PRK15068 tRNA mo(5)U34 methylt 72.2 1.3E+02 0.0029 31.6 15.3 138 241-404 75-225 (322)
38 PRK05785 hypothetical protein; 69.8 91 0.002 31.0 12.7 93 276-404 52-145 (226)
39 PF08242 Methyltransf_12: Meth 66.0 13 0.00029 31.1 5.1 32 280-318 1-32 (99)
40 PRK07580 Mg-protoporphyrin IX 65.6 45 0.00097 32.3 9.5 98 275-402 63-163 (230)
41 PF02353 CMAS: Mycolic acid cy 64.4 48 0.001 34.3 9.8 113 263-404 50-165 (273)
42 PRK05134 bifunctional 3-demeth 63.0 1.5E+02 0.0033 28.8 14.1 35 273-316 46-80 (233)
43 PF00891 Methyltransf_2: O-met 61.2 71 0.0015 31.5 10.1 111 265-409 90-204 (241)
44 PRK10258 biotin biosynthesis p 61.0 1.8E+02 0.0038 28.8 13.7 47 261-316 28-74 (251)
45 PF03848 TehB: Tellurite resis 60.4 1.1E+02 0.0023 30.3 10.9 111 265-403 20-131 (192)
46 TIGR02081 metW methionine bios 60.3 73 0.0016 30.5 9.7 41 266-316 6-46 (194)
47 TIGR00452 methyltransferase, p 58.4 1.2E+02 0.0026 32.2 11.6 44 265-316 111-154 (314)
48 PRK10909 rsmD 16S rRNA m(2)G96 58.4 1.3E+02 0.0028 29.7 11.1 106 277-409 55-163 (199)
49 PRK06922 hypothetical protein; 58.2 58 0.0013 38.1 9.9 107 277-403 420-535 (677)
50 PF03291 Pox_MCEL: mRNA cappin 58.0 61 0.0013 34.6 9.4 117 275-403 62-184 (331)
51 PRK11705 cyclopropane fatty ac 57.9 85 0.0018 34.0 10.7 45 264-316 156-200 (383)
52 PF07521 RMMBL: RNA-metabolisi 55.7 21 0.00045 26.6 3.9 37 365-403 2-38 (43)
53 PRK11873 arsM arsenite S-adeno 53.2 1.3E+02 0.0028 30.3 10.6 101 277-403 79-181 (272)
54 PRK15001 SAM-dependent 23S rib 52.3 1.4E+02 0.0029 32.6 11.1 107 278-405 231-340 (378)
55 COG2227 UbiG 2-polyprenyl-3-me 49.6 53 0.0011 33.8 6.9 100 275-403 59-159 (243)
56 TIGR00138 gidB 16S rRNA methyl 48.2 1.8E+02 0.0038 28.0 10.2 97 277-404 44-141 (181)
57 TIGR00091 tRNA (guanine-N(7)-) 47.2 59 0.0013 31.3 6.7 114 276-405 17-132 (194)
58 PF13679 Methyltransf_32: Meth 46.3 43 0.00093 30.6 5.4 42 271-317 21-64 (141)
59 smart00828 PKS_MT Methyltransf 44.9 1.6E+02 0.0034 28.5 9.4 100 278-403 2-102 (224)
60 PRK00121 trmB tRNA (guanine-N( 44.7 1.3E+02 0.0028 29.2 8.8 112 275-403 40-154 (202)
61 COG2230 Cfa Cyclopropane fatty 44.0 2.1E+02 0.0045 30.1 10.4 114 261-403 58-174 (283)
62 COG4106 Tam Trans-aconitate me 43.1 87 0.0019 32.1 7.2 110 271-412 26-136 (257)
63 KOG3178 Hydroxyindole-O-methyl 43.0 1.1E+02 0.0025 32.9 8.5 157 265-489 166-327 (342)
64 PRK14968 putative methyltransf 42.7 2.8E+02 0.006 25.6 11.3 31 277-316 25-55 (188)
65 TIGR02469 CbiT precorrin-6Y C5 39.8 97 0.0021 26.4 6.3 32 278-316 22-53 (124)
66 COG2242 CobL Precorrin-6B meth 36.9 55 0.0012 32.3 4.7 53 269-337 28-83 (187)
67 PRK13168 rumA 23S rRNA m(5)U19 36.0 3.5E+02 0.0075 29.7 11.3 108 269-404 291-399 (443)
68 PRK00274 ksgA 16S ribosomal RN 35.4 60 0.0013 33.2 5.0 58 251-317 13-75 (272)
69 TIGR03439 methyl_EasF probable 35.4 4.2E+02 0.009 28.2 11.3 127 266-408 69-200 (319)
70 TIGR02085 meth_trns_rumB 23S r 34.9 3.3E+02 0.0072 29.3 10.7 97 278-404 236-333 (374)
71 PRK13255 thiopurine S-methyltr 34.8 2.2E+02 0.0049 28.2 8.8 33 276-317 38-70 (218)
72 PLN02446 (5-phosphoribosyl)-5- 34.5 48 0.001 34.4 4.0 27 272-299 55-81 (262)
73 COG1500 Predicted exosome subu 33.9 1.1E+02 0.0024 31.2 6.3 65 437-503 86-153 (234)
74 TIGR00537 hemK_rel_arch HemK-r 33.8 4E+02 0.0087 24.9 11.9 106 278-409 22-144 (179)
75 cd02685 MIT_C MIT_C; domain fo 32.0 2.2E+02 0.0048 27.2 7.7 71 273-344 18-92 (148)
76 PRK03522 rumB 23S rRNA methylu 32.0 3.5E+02 0.0076 28.2 10.1 98 277-404 175-273 (315)
77 PRK13944 protein-L-isoaspartat 31.8 4E+02 0.0088 25.8 9.9 109 266-403 63-171 (205)
78 TIGR00406 prmA ribosomal prote 30.8 5.8E+02 0.013 26.2 11.4 121 252-403 132-257 (288)
79 TIGR03534 RF_mod_PrmC protein- 30.6 4.4E+02 0.0095 25.6 10.1 78 276-373 88-165 (251)
80 KOG2904 Predicted methyltransf 30.1 1.3E+02 0.0028 31.9 6.2 66 266-344 136-204 (328)
81 PF05175 MTS: Methyltransferas 29.0 4.8E+02 0.01 24.4 10.0 118 263-402 19-137 (170)
82 TIGR01716 RGG_Cterm transcript 28.9 1.1E+02 0.0023 29.7 5.3 55 163-217 127-182 (220)
83 smart00650 rADc Ribosomal RNA 28.8 97 0.0021 28.9 4.9 43 265-316 3-45 (169)
84 PRK08287 cobalt-precorrin-6Y C 27.0 5.4E+02 0.012 24.2 11.7 97 277-404 33-130 (187)
85 PRK11088 rrmA 23S rRNA methylt 24.6 2.3E+02 0.005 28.7 7.1 72 239-316 51-122 (272)
86 TIGR02129 hisA_euk phosphoribo 24.1 74 0.0016 32.8 3.3 25 272-300 50-74 (253)
87 PRK00107 gidB 16S rRNA methylt 23.4 6.9E+02 0.015 24.2 12.6 97 277-404 47-144 (187)
88 PF13552 DUF4127: Protein of u 23.0 2.4E+02 0.0053 31.8 7.4 62 373-434 78-147 (497)
89 TIGR03840 TMPT_Se_Te thiopurin 22.8 5.6E+02 0.012 25.3 9.2 32 277-317 36-67 (213)
90 PRK07402 precorrin-6B methylas 22.5 4.4E+02 0.0096 25.1 8.3 118 258-404 23-141 (196)
91 KOG1165 Casein kinase (serine/ 22.4 48 0.001 36.0 1.6 14 272-285 163-176 (449)
92 PF11455 DUF3018: Protein of 21.8 54 0.0012 27.1 1.5 21 471-491 3-23 (65)
93 TIGR03533 L3_gln_methyl protei 20.7 9.3E+02 0.02 24.8 11.3 50 276-338 122-171 (284)
94 PLN02490 MPBQ/MSBQ methyltrans 20.5 4.4E+02 0.0096 28.3 8.4 35 275-316 113-147 (340)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=2.7e-107 Score=857.27 Aligned_cols=366 Identities=46% Similarity=0.768 Sum_probs=338.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHhhhcccccCCCCcccccCCCC-CCCCCHHH
Q 009215 163 LVHLLLACAEAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSLLQNINANGTFTGGAMD-VPLITREE 241 (540)
Q Consensus 163 Lv~LLl~CAeAV~~gd~~~A~~lL~~L~~~aSp~Gd~~QRlA~yFaeAL~~Rl~~~~~~~~~~~~~~~~~~-~~~~~~~~ 241 (540)
|++||++||+||+.||...|+.+|++|++++||+|||+||||+||++||.+||.+. +++.|...... .+.....+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~----~~~~~~~~~~~~~~~~~~~~ 76 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGS----GPGLYSALPPSSPSPSESSE 76 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhcc----CcccccCCCCccccccchHH
Confidence 68999999999999999999999999999999999999999999999999999963 44555211111 11112567
Q ss_pred HHHHHHHHHhcCCcchhhhHhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC--Chh
Q 009215 242 KMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ--NLS 319 (540)
Q Consensus 242 ~~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~--~~~ 319 (540)
++.||++||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|. +..
T Consensus 77 ~~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~ 156 (374)
T PF03514_consen 77 QLAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSAD 156 (374)
T ss_pred HHHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999976 455
Q ss_pred HHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccc---cchHHHHHHHHHhcC
Q 009215 320 ELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKES---RGSLKAILQAIKRLN 396 (540)
Q Consensus 320 ~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es---~~~r~~~L~~Ir~L~ 396 (540)
.+++++++|.++|+++||+|+|+.+... .+++++.++|++++||+|||||+++||||++++ .++++.||+.||+|+
T Consensus 157 ~l~~~g~rL~~fA~~lgv~fef~~v~~~-~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~ 235 (374)
T PF03514_consen 157 ELQETGRRLAEFARSLGVPFEFHPVVVE-SLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLN 235 (374)
T ss_pred HHHHHHHHHHHHHHHcCccEEEEecccC-chhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcC
Confidence 7899999999999999999999996422 456788899999999999999999999999765 458999999999999
Q ss_pred CcEEEEEeecCCCCCCchhHHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHH
Q 009215 397 PTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQW 476 (540)
Q Consensus 397 PkvvvlvEqea~hnsp~F~~RF~EAL~yYsAlFDSLea~lp~~s~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~W 476 (540)
|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++++|
T Consensus 236 P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W 315 (374)
T PF03514_consen 236 PKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQW 315 (374)
T ss_pred CCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeeecCCc--HHHHHHHHhccCCCCcEEEeeCCEEEEEECCceeEEEeece
Q 009215 477 RRQLGRAGFQLVGLKS--LSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMLASAWQ 533 (540)
Q Consensus 477 r~rm~rAGF~~vpls~--~~qA~~ll~~~~~~gy~v~~d~g~LlLgWk~rpL~aaSAWr 533 (540)
+.||++|||+++|+|+ +.|||+|++.|+++||+|++++|||+||||++||+++||||
T Consensus 316 ~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 316 RRRMRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHHHHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 9999999999999999 89999999999888999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.46 E-value=0.0078 Score=60.40 Aligned_cols=192 Identities=13% Similarity=0.115 Sum_probs=100.8
Q ss_pred HhcCCcchhhhHhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHH
Q 009215 250 YQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVL 329 (540)
Q Consensus 250 ~e~sP~~kfahftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~ 329 (540)
....|.+...|-.++..+-..+. ..-+|+|+|.|.|.--. .|+.+- ..|..++|||+.+... .+..-
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~----~l~~~~-~~~~~~v~gvD~S~~m------l~~A~ 99 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATL----SVRRNI-HHDNCKIIAIDNSPAM------IERCR 99 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHH----HHHHhc-CCCCCeEEEEeCCHHH------HHHHH
Confidence 45678888888776654433333 22479999999996333 333321 1256799999986532 22333
Q ss_pred HHHHhcCCceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE-EEeecC
Q 009215 330 HDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLT-VVEQDA 407 (540)
Q Consensus 330 ~~a~~fgl~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvv-lvEqea 407 (540)
++++..++.-..+++...+. . +.....+++ -+.+.||++.++ .+..+|+.| +.|+|.-.+ ++|.=.
T Consensus 100 ~~~~~~~~~~~v~~~~~d~~--~-----~~~~~~D~v--v~~~~l~~l~~~---~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 100 RHIDAYKAPTPVDVIEGDIR--D-----IAIENASMV--VLNFTLQFLEPS---ERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred HHHHhcCCCCCeEEEeCChh--h-----CCCCCCCEE--ehhhHHHhCCHH---HHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 44555554333333432211 1 112223443 355778888643 456777765 788997554 556433
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHhcCCCee
Q 009215 408 NHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQL 487 (540)
Q Consensus 408 ~hnsp~F~~RF~EAL~yYsAlFDSLea~lp~~s~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~rAGF~~ 487 (540)
.. .+.....+.+..+.|. .+ .+-.. ..+++ ......| +-++++..+...+|+.|||..
T Consensus 168 ~~-~~~~~~~~~~~~~~~~------~~-~g~s~---~ei~~--~~~~~~~---------~~~~~~~~~~~~~L~~aGF~~ 225 (247)
T PRK15451 168 FE-DAKVGELLFNMHHDFK------RA-NGYSE---LEISQ--KRSMLEN---------VMLTDSVETHKARLHKAGFEH 225 (247)
T ss_pred CC-cchhHHHHHHHHHHHH------HH-cCCCH---HHHHH--HHHHHHh---------hcccCCHHHHHHHHHHcCchh
Confidence 22 2233333333332221 11 11111 12222 1122233 334567888999999999965
Q ss_pred e
Q 009215 488 V 488 (540)
Q Consensus 488 v 488 (540)
+
T Consensus 226 v 226 (247)
T PRK15451 226 S 226 (247)
T ss_pred H
Confidence 3
No 3
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.94 E-value=0.73 Score=45.71 Aligned_cols=106 Identities=17% Similarity=0.260 Sum_probs=60.0
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCc
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLT 354 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~ 354 (540)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+.+... .+...++++..+.....+++...+. .
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~m------l~~a~~~~~~~~~~~~v~~~~~d~~--~-- 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQPM------VERCRQHIAAYHSEIPVEILCNDIR--H-- 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHHH------HHHHHHHHHhcCCCCCeEEEECChh--h--
Confidence 34579999999994 5555554421 256899999986431 2223334444443323344432211 1
Q ss_pred ccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 009215 355 RENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVV 403 (540)
Q Consensus 355 ~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvlv 403 (540)
+...+.. +|-+.+.||++.++ .+..+|+.+ +.|+|.-.+++
T Consensus 118 ---~~~~~~d--~v~~~~~l~~~~~~---~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 118 ---VEIKNAS--MVILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred ---CCCCCCC--EEeeecchhhCCHH---HHHHHHHHHHHhcCCCeEEEE
Confidence 1122233 34466678888543 355666655 77899988865
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.65 E-value=0.81 Score=44.80 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=85.2
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEe
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMI 344 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v 344 (540)
+.++..+.-...-+|+|+|.|.|. +...|+.+ .+|..++|||+.+... .+...+.++..+++ ...++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~----~~~~la~~--~~~~~~v~gvD~s~~~------~~~a~~~~~~~~~~-~v~~~ 101 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD----WSIALAEA--VGPEGHVIGLDFSENM------LSVGRQKVKDAGLH-NVELV 101 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH----HHHHHHHH--hCCCCEEEEEECCHHH------HHHHHHHHHhcCCC-ceEEE
Confidence 455555553344589999999996 33344443 2345689999986421 22223333444432 22333
Q ss_pred eccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEeecCCCCCCchhHHHHHHHH
Q 009215 345 SEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQ-AIKRLNPTLLTVVEQDANHNGPFFLGRFLESLH 423 (540)
Q Consensus 345 ~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~-~Ir~L~PkvvvlvEqea~hnsp~F~~RF~EAL~ 423 (540)
..... .+. +....=+.|+ +.+.+|++.+ . ..+|+ ..+.|+|...+++-.....+.+. +...+.
T Consensus 102 ~~d~~--~~~---~~~~~fD~V~--~~~~l~~~~~----~-~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~----~~~~~~ 165 (231)
T TIGR02752 102 HGNAM--ELP---FDDNSFDYVT--IGFGLRNVPD----Y-MQVLREMYRVVKPGGKVVCLETSQPTIPG----FKQLYF 165 (231)
T ss_pred Eechh--cCC---CCCCCccEEE--EecccccCCC----H-HHHHHHHHHHcCcCeEEEEEECCCCCChH----HHHHHH
Confidence 21111 111 1111123444 4456677643 2 35555 45889998666543333333322 333333
Q ss_pred HHHHHH-HhhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHhcCCCeeecC
Q 009215 424 YYSAIF-DSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGL 490 (540)
Q Consensus 424 yYsAlF-DSLea~lp~~s~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~rAGF~~vpl 490 (540)
+|...+ -.+...+.... .+...+...+. +--..++++..|+.+||..+.+
T Consensus 166 ~~~~~~~p~~~~~~~~~~-----~~~~~~~~~~~------------~~~~~~~l~~~l~~aGf~~~~~ 216 (231)
T TIGR02752 166 FYFKYIMPLFGKLFAKSY-----KEYSWLQESTR------------DFPGMDELAEMFQEAGFKDVEV 216 (231)
T ss_pred HHHcChhHHhhHHhcCCH-----HHHHHHHHHHH------------HcCCHHHHHHHHHHcCCCeeEE
Confidence 332211 11121121111 11111222222 2234668999999999987653
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.58 E-value=0.79 Score=47.32 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=67.7
Q ss_pred hHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEE
Q 009215 264 NEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSM 343 (540)
Q Consensus 264 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~ 343 (540)
.+.|++.+.-...-+|+|+|.|.| .+...++.+- |.+++|+++.+. ..+...+.+++.|+.=..++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G----~~~~~~~~~~---p~~~~~~~D~~~-------~~~~a~~~~~~~gl~~rv~~ 203 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIG----DISAAMLKHF---PELDSTILNLPG-------AIDLVNENAAEKGVADRMRG 203 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchh----HHHHHHHHHC---CCCEEEEEecHH-------HHHHHHHHHHhCCccceEEE
Confidence 567788876566679999999999 3445555542 678999998632 22334456666665433444
Q ss_pred eeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE-EEeecC
Q 009215 344 ISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLT-VVEQDA 407 (540)
Q Consensus 344 v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvv-lvEqea 407 (540)
+..... + . .+...+++++. ..||+..++ ....+|+.+ +.|+|.-.+ ++|.-.
T Consensus 204 ~~~d~~----~-~--~~~~~D~v~~~--~~lh~~~~~---~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 204 IAVDIY----K-E--SYPEADAVLFC--RILYSANEQ---LSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EecCcc----C-C--CCCCCCEEEeE--hhhhcCChH---HHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 432211 1 1 12223444333 345665432 345677655 789996555 556533
No 6
>PRK06202 hypothetical protein; Provisional
Probab=94.26 E-value=0.84 Score=45.06 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcC-CCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEE
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASR-PEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSM 343 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R-p~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~ 343 (540)
+.+...+...+...|+|+|.|.|. +. ..|+.+ +...|..+||||+.+.... +...+.+.. -+++|..
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~-~~---~~L~~~~~~~g~~~~v~gvD~s~~~l------~~a~~~~~~--~~~~~~~ 117 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGD-LA---IDLARWARRDGLRLEVTAIDPDPRAV------AFARANPRR--PGVTFRQ 117 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCH-HH---HHHHHHHHhCCCCcEEEEEcCCHHHH------HHHHhcccc--CCCeEEE
Confidence 333333343455789999999995 33 333322 1123567999999875321 111111111 2334443
Q ss_pred eeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 009215 344 ISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVV 403 (540)
Q Consensus 344 v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvvlv 403 (540)
.... .+ ...++..=+|-|.+.|||+.++ .+..+|+.+.++.-..+++.
T Consensus 118 ~~~~----~l-----~~~~~~fD~V~~~~~lhh~~d~---~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 118 AVSD----EL-----VAEGERFDVVTSNHFLHHLDDA---EVVRLLADSAALARRLVLHN 165 (232)
T ss_pred Eecc----cc-----cccCCCccEEEECCeeecCChH---HHHHHHHHHHHhcCeeEEEe
Confidence 3210 11 1122333345556678999653 35678887766554444443
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.50 E-value=11 Score=38.35 Aligned_cols=132 Identities=16% Similarity=0.095 Sum_probs=65.4
Q ss_pred hHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEE
Q 009215 264 NEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSM 343 (540)
Q Consensus 264 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~ 343 (540)
...+++.+.-...-+|+|+|.|.|. +...|+.+. +|.-+||||+.+... ++...++.........-+++|
T Consensus 62 r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~m--l~~A~~r~~~~~~~~~~~i~~-- 131 (261)
T PLN02233 62 KRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSEQ--LAVAASRQELKAKSCYKNIEW-- 131 (261)
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHHH--HHHHHHHhhhhhhccCCCeEE--
Confidence 3344444443345589999999996 334555542 244589999987532 111111111001111123333
Q ss_pred eeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEE-EEeecCCCCCCchhHHH
Q 009215 344 ISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLT-VVEQDANHNGPFFLGRF 418 (540)
Q Consensus 344 v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvv-lvEqea~hnsp~F~~RF 418 (540)
+...+ ..+.+.++..=+|-+.+.||++.+ +...+-+..|-|+|.-.+ ++|-. .....|...+
T Consensus 132 ~~~d~-------~~lp~~~~sfD~V~~~~~l~~~~d----~~~~l~ei~rvLkpGG~l~i~d~~--~~~~~~~~~~ 194 (261)
T PLN02233 132 IEGDA-------TDLPFDDCYFDAITMGYGLRNVVD----RLKAMQEMYRVLKPGSRVSILDFN--KSTQPFTTSM 194 (261)
T ss_pred EEccc-------ccCCCCCCCEeEEEEecccccCCC----HHHHHHHHHHHcCcCcEEEEEECC--CCCcHHHHHH
Confidence 22111 122333343445567788898753 344444455889998554 44433 2233454444
No 8
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=92.28 E-value=0.91 Score=41.01 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=55.4
Q ss_pred CCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCC
Q 009215 273 GKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSL 352 (540)
Q Consensus 273 g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~ 352 (540)
..+.-.|+|+|.|.| .+.+.|+.+ |. ++||++.+.... +. ..+.+......
T Consensus 20 ~~~~~~vLDiGcG~G----~~~~~l~~~--~~---~~~g~D~~~~~~------~~---------~~~~~~~~~~~----- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG----SFLRALAKR--GF---EVTGVDISPQMI------EK---------RNVVFDNFDAQ----- 70 (161)
T ss_dssp TTTTSEEEEESSTTS----HHHHHHHHT--TS---EEEEEESSHHHH------HH---------TTSEEEEEECH-----
T ss_pred cCCCCEEEEEcCCCC----HHHHHHHHh--CC---EEEEEECCHHHH------hh---------hhhhhhhhhhh-----
Confidence 455679999999999 355555554 32 999999864321 11 12222221100
Q ss_pred CcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE-eecCC
Q 009215 353 LTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVV-EQDAN 408 (540)
Q Consensus 353 l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvlv-Eqea~ 408 (540)
.....++-.=+|-|...|||+.+ ...+|+.| +.|+|.-++++ ....+
T Consensus 71 ----~~~~~~~~fD~i~~~~~l~~~~d-----~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 71 ----DPPFPDGSFDLIICNDVLEHLPD-----PEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ----THHCHSSSEEEEEEESSGGGSSH-----HHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ----hhhccccchhhHhhHHHHhhccc-----HHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 11122344555666688899963 34566655 66899666544 44443
No 9
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=90.92 E-value=15 Score=40.22 Aligned_cols=115 Identities=12% Similarity=0.071 Sum_probs=63.5
Q ss_pred hhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEE
Q 009215 263 ANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFS 342 (540)
Q Consensus 263 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~ 342 (540)
....+++.+.-...-+|+|+|.|.|. +...|+.+.+ .++|||+.+... .+...+.+...+..+.|.
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~~------l~~A~~~~~~~~~~v~~~ 319 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVNM------ISFALERAIGRKCSVEFE 319 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHHH------HHHHHHHhhcCCCceEEE
Confidence 34556676653445689999999994 4455676553 389999986432 111112222223344443
Q ss_pred EeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 009215 343 MISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVE 404 (540)
Q Consensus 343 ~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvE 404 (540)
... +. .+.+.++..=+|-|...++|+.+ +...+=...|.|+|.-.+++.
T Consensus 320 ~~d--~~-------~~~~~~~~fD~I~s~~~l~h~~d----~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 320 VAD--CT-------KKTYPDNSFDVIYSRDTILHIQD----KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EcC--cc-------cCCCCCCCEEEEEECCcccccCC----HHHHHHHHHHHcCCCeEEEEE
Confidence 322 11 11122233344556667788753 333444455889999888664
No 10
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.55 E-value=2.5 Score=38.81 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=60.2
Q ss_pred CCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCC
Q 009215 274 KDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLL 353 (540)
Q Consensus 274 ~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l 353 (540)
.+..+|+|+|.|.|. +...|+.+ -.|..+||||+.+.. ..+..-+.+++.+++ ..+++...+. ++
T Consensus 2 ~~~~~iLDlGcG~G~----~~~~l~~~--~~~~~~i~gvD~s~~------~i~~a~~~~~~~~~~-ni~~~~~d~~--~l 66 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR----LLIQLAKE--LNPGAKIIGVDISEE------MIEYAKKRAKELGLD-NIEFIQGDIE--DL 66 (152)
T ss_dssp TTTSEEEEET-TTSH----HHHHHHHH--STTTSEEEEEESSHH------HHHHHHHHHHHTTST-TEEEEESBTT--CG
T ss_pred CCCCEEEEecCcCcH----HHHHHHHh--cCCCCEEEEEECcHH------HHHHhhccccccccc-ccceEEeehh--cc
Confidence 356789999999994 44445531 123456999998643 344555677778876 4444443222 12
Q ss_pred cccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 009215 354 TRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVV 403 (540)
Q Consensus 354 ~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvvlv 403 (540)
... +. +..=+|.+...+|++.+ +...+-+..+.|+|..++++
T Consensus 67 ~~~---~~-~~~D~I~~~~~l~~~~~----~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 67 PQE---LE-EKFDIIISNGVLHHFPD----PEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp CGC---SS-TTEEEEEEESTGGGTSH----HHHHHHHHHHHEEEEEEEEE
T ss_pred ccc---cC-CCeeEEEEcCchhhccC----HHHHHHHHHHHcCCCcEEEE
Confidence 211 21 33333444444577643 33344455788999877765
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.25 E-value=23 Score=36.08 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=112.2
Q ss_pred CCcchhh-hHhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHH
Q 009215 253 TPYISFG-FMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHD 331 (540)
Q Consensus 253 sP~~kfa-hftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~ 331 (540)
.+++.|+ |.+=+++..+.+.-..--+|+|.+.|.| .+.-.|+.+-+ .-+|||++.+.. .++.-.++
T Consensus 28 n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG----d~a~~~~k~~g---~g~v~~~D~s~~------ML~~a~~k 94 (238)
T COG2226 28 NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG----DMALLLAKSVG---TGEVVGLDISES------MLEVAREK 94 (238)
T ss_pred cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc----HHHHHHHHhcC---CceEEEEECCHH------HHHHHHHH
Confidence 4555555 3556666666664446789999999998 33334444433 789999998753 23445566
Q ss_pred HHhcCCceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEeecCCCC
Q 009215 332 ATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQA-IKRLNPTLLTVVEQDANHN 410 (540)
Q Consensus 332 a~~fgl~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~-Ir~L~PkvvvlvEqea~hn 410 (540)
+.+.++.- ++++.. +.+.|.+.++-.=+|.+.|.||++.+ .+.+|+- -|=|+|...++|-.=..+.
T Consensus 95 ~~~~~~~~-i~fv~~-------dAe~LPf~D~sFD~vt~~fglrnv~d-----~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 95 LKKKGVQN-VEFVVG-------DAENLPFPDNSFDAVTISFGLRNVTD-----IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhccCccc-eEEEEe-------chhhCCCCCCccCEEEeeehhhcCCC-----HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 77777443 566543 22345555666667889999999864 4555554 4778999977664444444
Q ss_pred CCchhHHHHHHHH-HHHH-HHHhhhhcCCCCchHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHhcCCCeee
Q 009215 411 GPFFLGRFLESLH-YYSA-IFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLV 488 (540)
Q Consensus 411 sp~F~~RF~EAL~-yYsA-lFDSLea~lp~~s~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~rAGF~~v 488 (540)
.+. |..+++ ||.. ++=.+......+.... .+|.+-|.. +-..+.=...+..+||..+
T Consensus 162 ~~~----~~~~~~~~~~~~v~P~~g~~~~~~~~~y-----~yL~eSi~~------------~p~~~~l~~~~~~~gf~~i 220 (238)
T COG2226 162 NPV----LRKAYILYYFKYVLPLIGKLVAKDAEAY-----EYLAESIRR------------FPDQEELKQMIEKAGFEEV 220 (238)
T ss_pred chh----hHHHHHHHHHHhHhhhhceeeecChHHH-----HHHHHHHHh------------CCCHHHHHHHHHhcCceEE
Confidence 333 333334 4444 5555554333222222 234444433 3334455667778999876
Q ss_pred c
Q 009215 489 G 489 (540)
Q Consensus 489 p 489 (540)
.
T Consensus 221 ~ 221 (238)
T COG2226 221 R 221 (238)
T ss_pred e
Confidence 5
No 12
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.21 E-value=2 Score=41.63 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=64.8
Q ss_pred hhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeE
Q 009215 262 AANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEF 341 (540)
Q Consensus 262 tANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF 341 (540)
++...|++++.-...-+|+|+|.|.|.- ...||.+ + .++|||+.+.. ..+.+.++++..++++.+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~----a~~la~~-g----~~V~~iD~s~~------~l~~a~~~~~~~~~~v~~ 81 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRN----SLYLSLA-G----YDVRAWDHNPA------SIASVLDMKARENLPLRT 81 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHH----HHHHHHC-C----CeEEEEECCHH------HHHHHHHHHHHhCCCcee
Confidence 4567888888755567999999999963 3344544 2 48999998642 233344455555666443
Q ss_pred EEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE
Q 009215 342 SMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLT 401 (540)
Q Consensus 342 ~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvv 401 (540)
.... +. ... +. ..-+.|+ +.+.+|++.. ..++.+++.+ +.|+|.-.+
T Consensus 82 ~~~d--~~--~~~---~~-~~fD~I~--~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 82 DAYD--IN--AAA---LN-EDYDFIF--STVVFMFLQA---GRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred Eecc--ch--hcc---cc-CCCCEEE--EecccccCCH---HHHHHHHHHHHHHhCCCcEE
Confidence 3322 11 011 11 1123444 3344677643 3567777765 778999763
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.60 E-value=4.2 Score=44.55 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=72.3
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEe
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMI 344 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v 344 (540)
..|++.+.....-+|+|+|.|.| .+...|+.+. -++|||+.+... + +. .+......-++.| +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G----~~~~~la~~~-----~~v~giD~s~~~--l----~~-a~~~~~~~~~i~~--~ 88 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIG----RFTGELAKKA-----GQVIALDFIESV--I----KK-NESINGHYKNVKF--M 88 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcC----HHHHHHHhhC-----CEEEEEeCCHHH--H----HH-HHHHhccCCceEE--E
Confidence 45566665444458999999999 4455566542 178999976432 1 11 1111111112333 2
Q ss_pred eccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCC--------CCchh
Q 009215 345 SEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVEQDANHN--------GPFFL 415 (540)
Q Consensus 345 ~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvEqea~hn--------sp~F~ 415 (540)
...+.. ..+...++..=+|-|.+.|||+.++ .+..+|+.+ |.|+|...++....+-++ .|++.
T Consensus 89 ~~d~~~-----~~~~~~~~~fD~I~~~~~l~~l~~~---~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~ 160 (475)
T PLN02336 89 CADVTS-----PDLNISDGSVDLIFSNWLLMYLSDK---EVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHY 160 (475)
T ss_pred Eecccc-----cccCCCCCCEEEEehhhhHHhCCHH---HHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCee
Confidence 221110 1122223333355566778998653 456777765 558999888664333222 23332
Q ss_pred HHHHHHHHHHHHHHHh
Q 009215 416 GRFLESLHYYSAIFDS 431 (540)
Q Consensus 416 ~RF~EAL~yYsAlFDS 431 (540)
-...+|..+|..
T Consensus 161 ----~~~~~~~~~f~~ 172 (475)
T PLN02336 161 ----REPRFYTKVFKE 172 (475)
T ss_pred ----cChHHHHHHHHH
Confidence 125577777765
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=89.46 E-value=2.1 Score=36.50 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=60.0
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccc
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTREN 357 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~ 357 (540)
+|+|+|.|.| .+...|+.+ -|..++|||+.+.. ..+...+.+.+.+..-..+++...+ ...
T Consensus 4 ~vLDlGcG~G----~~~~~l~~~---~~~~~v~gvD~s~~------~~~~a~~~~~~~~~~~~i~~~~~d~------~~~ 64 (112)
T PF12847_consen 4 RVLDLGCGTG----RLSIALARL---FPGARVVGVDISPE------MLEIARERAAEEGLSDRITFVQGDA------EFD 64 (112)
T ss_dssp EEEEETTTTS----HHHHHHHHH---HTTSEEEEEESSHH------HHHHHHHHHHHTTTTTTEEEEESCC------HGG
T ss_pred EEEEEcCcCC----HHHHHHHhc---CCCCEEEEEeCCHH------HHHHHHHHHHhcCCCCCeEEEECcc------ccC
Confidence 6899999999 344445441 14568999998642 2333344444444433344443222 001
Q ss_pred cCc-cCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 009215 358 LDL-REGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVE 404 (540)
Q Consensus 358 L~i-~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvE 404 (540)
... .+-++++.+. +.+|++... ..++.+|+.+ +.|+|.-.++++
T Consensus 65 ~~~~~~~D~v~~~~-~~~~~~~~~--~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 PDFLEPFDLVICSG-FTLHFLLPL--DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTSSCEEEEEECS-GSGGGCCHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEECC-Cccccccch--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 111 1234555555 567777654 3567777765 688998888774
No 15
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.45 E-value=1.3 Score=37.77 Aligned_cols=97 Identities=26% Similarity=0.366 Sum_probs=51.3
Q ss_pred EEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccccc
Q 009215 279 IIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENL 358 (540)
Q Consensus 279 IIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~L 358 (540)
|+|+|.|.|..=..|.+.+ +.| |..++|||+.+.. ..+...++.++.++++.| +...+ .. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~---~~~-~~~~~~gvD~s~~------~l~~~~~~~~~~~~~~~~--~~~D~--~~-----l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF---DAG-PSSRVIGVDISPE------MLELAKKRFSEDGPKVRF--VQADA--RD-----L 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HH------HHHHHHHHSHHTTTTSEE--EESCT--TC-----H
T ss_pred CEEeecCCcHHHHHHHHHh---hhc-ccceEEEEECCHH------HHHHHHHhchhcCCceEE--EECCH--hH-----C
Confidence 7999999997666666665 122 6699999998643 233344444445565555 33222 11 2
Q ss_pred CccCCce-EEEEeccccccccccccchHHHHHHHHHh-cCC
Q 009215 359 DLREGEA-LFVNSIMHLHKYVKESRGSLKAILQAIKR-LNP 397 (540)
Q Consensus 359 ~i~~~Ea-LaVN~~~~LH~L~~es~~~r~~~L~~Ir~-L~P 397 (540)
....+.. +||++...+||+.+ ..+..+|+.+.+ |+|
T Consensus 62 ~~~~~~~D~v~~~~~~~~~~~~---~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 62 PFSDGKFDLVVCSGLSLHHLSP---EELEALLRRIARLLRP 99 (101)
T ss_dssp HHHSSSEEEEEE-TTGGGGSSH---HHHHHHHHHHHHTEEE
T ss_pred cccCCCeeEEEEcCCccCCCCH---HHHHHHHHHHHHHhCC
Confidence 2223333 34444555888654 367788887643 444
No 16
>PRK08317 hypothetical protein; Provisional
Probab=89.09 E-value=18 Score=34.66 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=29.3
Q ss_pred HHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 267 IRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 267 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
+++.+.-...-+|+|+|.|.|. | ...++.+- +|.-++|||+.+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~---~~~~a~~~--~~~~~v~~~d~~~ 54 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-D---ARELARRV--GPEGRVVGIDRSE 54 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-H---HHHHHHhc--CCCcEEEEEeCCH
Confidence 5566665556689999999984 3 33444432 2556899999864
No 17
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=88.42 E-value=11 Score=39.74 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=56.1
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcC------CceeEEEeeccC
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLG------INLEFSMISEPV 348 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fg------l~~eF~~v~~~~ 348 (540)
+...|+|+|.|.|. +...|+.+ + .+||||+.+... ++...++++..+ ....|.... +
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~m------l~~A~~~~~~~~~~~~~~~~~~f~~~D--l 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAAM------VAEAERRAKEALAALPPEVLPKFEAND--L 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHHH------HHHHHHHHHhcccccccccceEEEEcc--h
Confidence 34689999999995 55566654 2 389999987532 122222333321 233443321 1
Q ss_pred CCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 009215 349 TPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVV 403 (540)
Q Consensus 349 ~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvvlv 403 (540)
..++ ..=+ +|-|...|||+.++ ....+++.++++.|..+++.
T Consensus 207 --~~l~------~~fD--~Vv~~~vL~H~p~~---~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 --ESLS------GKYD--TVTCLDVLIHYPQD---KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred --hhcC------CCcC--EEEEcCEEEecCHH---HHHHHHHHHHhhcCCEEEEE
Confidence 1111 1112 33355667787653 45678888888888888774
No 18
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.70 E-value=6 Score=40.64 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=55.8
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccc
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTREN 357 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~ 357 (540)
+|+|+|.|.|. +...||.+ | .++|||+.+.. ..+.+.+.++..++++.+.... +. ...
T Consensus 123 ~vLDlGcG~G~----~~~~la~~--g---~~V~avD~s~~------ai~~~~~~~~~~~l~v~~~~~D--~~-----~~~ 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL--G---FDVTAVDINQQ------SLENLQEIAEKENLNIRTGLYD--IN-----SAS 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC--C---CEEEEEECCHH------HHHHHHHHHHHcCCceEEEEec--hh-----ccc
Confidence 89999999995 44456654 2 58999998643 2334555666667765554322 11 101
Q ss_pred cCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEE
Q 009215 358 LDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLT 401 (540)
Q Consensus 358 L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvv 401 (540)
+ -..-+.|+ +...||++.. ..+..+|+.+ +.|+|.-..
T Consensus 181 ~-~~~fD~I~--~~~vl~~l~~---~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 181 I-QEEYDFIL--STVVLMFLNR---ERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred c-cCCccEEE--EcchhhhCCH---HHHHHHHHHHHHhcCCCcEE
Confidence 1 01123443 3345677743 3566777765 788998764
No 19
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.14 E-value=34 Score=33.03 Aligned_cols=44 Identities=14% Similarity=-0.031 Sum_probs=27.8
Q ss_pred HHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 267 IRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 267 ILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
+++.+.-....+|+|+|.|.|. +...++.+ +|+..++|+++.+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s~ 86 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFSE 86 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCCH
Confidence 3344433345789999999985 33333332 23478999999864
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=86.12 E-value=6.2 Score=39.56 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=59.6
Q ss_pred HHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEee
Q 009215 266 AIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMIS 345 (540)
Q Consensus 266 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~ 345 (540)
.+++.+.-...-+|+|+|.|.| .+...|+.+- |..++|||+.+... .+.|++-+ ++|..
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G----~~~~~l~~~~---p~~~v~gvD~s~~~----------~~~a~~~~--~~~~~-- 78 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPG----NLTRYLARRW---PGAVIEALDSSPEM----------VAAARERG--VDART-- 78 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCC----HHHHHHHHHC---CCCEEEEEECCHHH----------HHHHHhcC--CcEEE--
Confidence 4666665555578999999999 4556677653 34689999986421 12222223 23322
Q ss_pred ccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 009215 346 EPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVE 404 (540)
Q Consensus 346 ~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvE 404 (540)
..+ .++. ..+..=+|-|...|||+.+ +.+.+-+..+.|+|.-.+++.
T Consensus 79 ~d~-------~~~~-~~~~fD~v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 79 GDV-------RDWK-PKPDTDVVVSNAALQWVPE----HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred cCh-------hhCC-CCCCceEEEEehhhhhCCC----HHHHHHHHHHhCCCCcEEEEE
Confidence 111 1111 1222333445556788753 333444456889999877665
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=86.08 E-value=35 Score=34.66 Aligned_cols=116 Identities=11% Similarity=0.133 Sum_probs=60.9
Q ss_pred HhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCcee
Q 009215 261 MAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLE 340 (540)
Q Consensus 261 ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~e 340 (540)
.-+.+.+++.+.-...-+|+|+|.|.|.- ...|+.+. ..++|||+.+... .+...+++.. .-.+.
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~----a~~la~~~----~~~v~giD~s~~~------~~~a~~~~~~-~~~i~ 102 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGG----CKYINEKY----GAHVHGVDICEKM------VNIAKLRNSD-KNKIE 102 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChh----hHHHHhhc----CCEEEEEECCHHH------HHHHHHHcCc-CCceE
Confidence 34567777777655667899999999963 23445433 2489999986431 1111111111 12233
Q ss_pred EEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 009215 341 FSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVV 403 (540)
Q Consensus 341 F~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvlv 403 (540)
|.... +. ...+.++..=+|-+...++|+..+ .+..+|+.+ +.|+|.-.+++
T Consensus 103 ~~~~D--~~-------~~~~~~~~FD~V~s~~~l~h~~~~---d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 103 FEAND--IL-------KKDFPENTFDMIYSRDAILHLSYA---DKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEECC--cc-------cCCCCCCCeEEEEEhhhHHhCCHH---HHHHHHHHHHHHcCCCcEEEE
Confidence 32211 11 111222222223344455666432 356677665 77899977765
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=85.35 E-value=8.4 Score=37.33 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=60.6
Q ss_pred hhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc-eeE
Q 009215 263 ANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN-LEF 341 (540)
Q Consensus 263 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~-~eF 341 (540)
+++.+++.+.....-.|+|+|.|.|. +...||.+ | .+||||+.+... .+...+.++.-++. +.+
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~--g---~~V~gvD~S~~~------i~~a~~~~~~~~~~~v~~ 82 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN--G---FDVTAWDKNPMS------IANLERIKAAENLDNLHT 82 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC--C---CEEEEEeCCHHH------HHHHHHHHHHcCCCcceE
Confidence 34455566654445689999999995 34456654 2 389999886432 22233334444443 333
Q ss_pred EEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 009215 342 SMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVV 403 (540)
Q Consensus 342 ~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvlv 403 (540)
.... +. .++ +. ..-+.|+.+ +.+|++.. ..+..+++.+ +.|+|.-.+++
T Consensus 83 ~~~d--~~--~~~---~~-~~fD~I~~~--~~~~~~~~---~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 83 AVVD--LN--NLT---FD-GEYDFILST--VVLMFLEA---KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecC--hh--hCC---cC-CCcCEEEEe--cchhhCCH---HHHHHHHHHHHHHcCCCcEEEE
Confidence 2211 11 111 11 122444433 44576643 3566777765 78899987543
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=85.12 E-value=14 Score=39.08 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=54.3
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCC--ceeEEEeeccCCCCCCc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI--NLEFSMISEPVTPSLLT 354 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl--~~eF~~v~~~~~~~~l~ 354 (540)
-.|+|+|.|.|. +...||. ++ .++|||+.+.... + ..-+.++.-++ .++|..-. +
T Consensus 133 ~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s~~~i--~----~Ar~~~~~~~~~~~i~~~~~d--a------ 189 (322)
T PLN02396 133 LKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAVDKNV--K----IARLHADMDPVTSTIEYLCTT--A------ 189 (322)
T ss_pred CEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCCHHHH--H----HHHHHHHhcCcccceeEEecC--H------
Confidence 479999999996 4556764 33 4899999865321 1 11112222122 33333221 1
Q ss_pred ccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 009215 355 RENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVE 404 (540)
Q Consensus 355 ~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvE 404 (540)
+++....+..=+|-|...|||+.+. +.+|+.+ +-|+|.-.+++.
T Consensus 190 -e~l~~~~~~FD~Vi~~~vLeHv~d~-----~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 190 -EKLADEGRKFDAVLSLEVIEHVANP-----AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred -HHhhhccCCCCEEEEhhHHHhcCCH-----HHHHHHHHHHcCCCcEEEEE
Confidence 1121122223345566688998653 4566665 567998888764
No 24
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=85.01 E-value=5.1 Score=40.34 Aligned_cols=180 Identities=14% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEee
Q 009215 266 AIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMIS 345 (540)
Q Consensus 266 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~ 345 (540)
.+++.+....-..|+|++.|.|.-+. .|+.+- +|.-+|||++.+.. .++...++++..+.. ..+++.
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~----~l~~~~--~~~~~v~~vD~s~~------ML~~a~~k~~~~~~~-~i~~v~ 104 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTR----ELARRV--GPNGKVVGVDISPG------MLEVARKKLKREGLQ-NIEFVQ 104 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHH----HHGGGS--S---EEEEEES-HH------HHHHHHHHHHHTT---SEEEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHH----HHHHHC--CCccEEEEecCCHH------HHHHHHHHHHhhCCC-CeeEEE
Confidence 34455555566799999999995433 444432 24559999998643 223334455555533 333333
Q ss_pred ccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEE-EEeecCCCCCCchhHHHHHHHHH
Q 009215 346 EPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLT-VVEQDANHNGPFFLGRFLESLHY 424 (540)
Q Consensus 346 ~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvv-lvEqea~hnsp~F~~RF~EAL~y 424 (540)
. +.+++.+.++..=+|-|.|.||++.+ ....+=...|-|+|.-.+ ++|-.-..| .+ +.....+
T Consensus 105 ~-------da~~lp~~d~sfD~v~~~fglrn~~d----~~~~l~E~~RVLkPGG~l~ile~~~p~~--~~---~~~~~~~ 168 (233)
T PF01209_consen 105 G-------DAEDLPFPDNSFDAVTCSFGLRNFPD----RERALREMYRVLKPGGRLVILEFSKPRN--PL---LRALYKF 168 (233)
T ss_dssp --------BTTB--S-TT-EEEEEEES-GGG-SS----HHHHHHHHHHHEEEEEEEEEEEEEB-SS--HH---HHHHHHH
T ss_pred c-------CHHHhcCCCCceeEEEHHhhHHhhCC----HHHHHHHHHHHcCCCeEEEEeeccCCCC--ch---hhceeee
Confidence 2 12344555677778889999999865 344455567889997654 445322221 22 2333344
Q ss_pred HHHHHHh-hhhcCCCCchHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHhcCCCeeecCC
Q 009215 425 YSAIFDS-LEASLPRNSPLRMNIERLHFAEEIRNIVAYEGSDRIERHERAHQWRRQLGRAGFQLVGLK 491 (540)
Q Consensus 425 YsAlFDS-Lea~lp~~s~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~~~Wr~rm~rAGF~~vpls 491 (540)
|...+-= +...++.+ +.. -.+|.+-|.+... .++=...|+.+||+.+...
T Consensus 169 y~~~ilP~~g~l~~~~---~~~--Y~yL~~Si~~f~~------------~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 169 YFKYILPLIGRLLSGD---REA--YRYLPESIRRFPS------------PEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp --------------------------------------------------------------------
T ss_pred eecccccccccccccc---ccc--ccccccccccccc------------ccccccccccccccccccc
Confidence 4443222 22222221 112 2345555554332 2334668889999876543
No 25
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=83.20 E-value=18 Score=37.55 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEee
Q 009215 266 AIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMIS 345 (540)
Q Consensus 266 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~ 345 (540)
.|.+++.. ...|||+|.|.|.-=..|+++|.. ..++|||+.+.+. ++.+. +.++.-.-.+++.++.
T Consensus 56 ~ia~~~~~--~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~m--L~~a~----~~l~~~~p~~~v~~i~ 121 (301)
T TIGR03438 56 EIAAATGA--GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADA--LKESA----AALAADYPQLEVHGIC 121 (301)
T ss_pred HHHHhhCC--CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHH--HHHHH----HHHHhhCCCceEEEEE
Confidence 34455532 347999999999776777777742 4779999987532 22222 3332211223444443
Q ss_pred ccCC-CCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecC
Q 009215 346 EPVT-PSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVEQDA 407 (540)
Q Consensus 346 ~~~~-~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvEqea 407 (540)
.... ...+.. ....+..+++.+...++++.. .....+|+.| +.|+|.-..++.-+.
T Consensus 122 gD~~~~~~~~~---~~~~~~~~~~~~gs~~~~~~~---~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 122 ADFTQPLALPP---EPAAGRRLGFFPGSTIGNFTP---EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred Ecccchhhhhc---ccccCCeEEEEecccccCCCH---HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 2221 000000 011235677777777888753 3466788887 678998776654444
No 26
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=82.30 E-value=47 Score=31.64 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=31.4
Q ss_pred hhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 263 ANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 263 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
.-+.+++.+.-.....|+|+|.|.|. +...++.+ +|+..++|+|+.+.
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~~ 74 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFSS 74 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECCH
Confidence 33455666655566799999999985 33344433 23447899999754
No 27
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=81.32 E-value=7.6 Score=31.40 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=51.8
Q ss_pred EEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccccC
Q 009215 280 IDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLD 359 (540)
Q Consensus 280 IDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~L~ 359 (540)
+|+|.|.|.....|. .+ +..++||++.+.. ..+...+.....++. ++.. +...+.
T Consensus 1 LdiG~G~G~~~~~l~----~~----~~~~v~~~D~~~~------~~~~~~~~~~~~~~~----~~~~-------d~~~l~ 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA----KR----GGASVTGIDISEE------MLEQARKRLKNEGVS----FRQG-------DAEDLP 55 (95)
T ss_dssp EEET-TTSHHHHHHH----HT----TTCEEEEEES-HH------HHHHHHHHTTTSTEE----EEES-------BTTSSS
T ss_pred CEecCcCCHHHHHHH----hc----cCCEEEEEeCCHH------HHHHHHhcccccCch----heee-------hHHhCc
Confidence 588888886555444 33 5678999998642 222333333333333 3221 122344
Q ss_pred ccCCceEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEE
Q 009215 360 LREGEALFVNSIMHLHKYVKESRGSLKAILQ-AIKRLNPTLLTV 402 (540)
Q Consensus 360 i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~-~Ir~L~Pkvvvl 402 (540)
+.++-.=+|-+...+||+ . .+..+|+ ..|-|+|.-..+
T Consensus 56 ~~~~sfD~v~~~~~~~~~-~----~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 56 FPDNSFDVVFSNSVLHHL-E----DPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp S-TT-EEEEEEESHGGGS-S----HHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccccccceeec-c----CHHHHHHHHHHHcCcCeEEe
Confidence 556666678888888988 2 3445555 458888877654
No 28
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=79.86 E-value=22 Score=34.89 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=55.0
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccc
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTREN 357 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~ 357 (540)
.|+|+|.|.|..-..| +.+- |..++|||+.+.... +.|++..-++.+.... +. +
T Consensus 46 ~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDiS~~~l----------~~A~~~~~~~~~~~~d--~~----~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAAL----KRLL---PFKHIYGVEINEYAV----------EKAKAYLPNINIIQGS--LF----D--- 99 (204)
T ss_pred cEEEEecCCCHHHHHH----HHhC---CCCeEEEEECCHHHH----------HHHHhhCCCCcEEEee--cc----C---
Confidence 4999999999544444 4331 235899999865321 1222211112222111 10 0
Q ss_pred cCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecC
Q 009215 358 LDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDA 407 (540)
Q Consensus 358 L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvEqea 407 (540)
...++..=+|-+...|||+. +..+..+++.+.+..=+.++++|...
T Consensus 100 -~~~~~sfD~V~~~~vL~hl~---p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 100 -PFKDNFFDLVLTKGVLIHIN---PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred -CCCCCCEEEEEECChhhhCC---HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 11223233344666678874 34678888888887777888888654
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=79.79 E-value=32 Score=36.38 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=56.9
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCc
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLT 354 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~ 354 (540)
..-+|+|+|.|.|. +...|+.+-+ .++|||+.+... .+...+.++..++.-...++...+.
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~~------i~~a~~~~~~~g~~~~v~~~~~D~~----- 178 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPVQ------AARANALAAAQGLSDKVSFQVADAL----- 178 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHHH------HHHHHHHHHhcCCCCceEEEEcCcc-----
Confidence 34579999999994 5566676542 389999975421 2223334455554322233321111
Q ss_pred ccccCccCCceEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEE
Q 009215 355 RENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQ-AIKRLNPTLLTVV 403 (540)
Q Consensus 355 ~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~-~Ir~L~Pkvvvlv 403 (540)
++...++..=+|-+...+||+.+ ...+|+ ..|-|+|.-.+++
T Consensus 179 --~~~~~~~~FD~V~s~~~~~h~~d-----~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 179 --NQPFEDGQFDLVWSMESGEHMPD-----KRKFVQELARVAAPGGRIII 221 (340)
T ss_pred --cCCCCCCCccEEEECCchhccCC-----HHHHHHHHHHHcCCCcEEEE
Confidence 11222333334556677888854 245554 4588899765543
No 30
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.58 E-value=14 Score=38.01 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=72.7
Q ss_pred hhHhhhHHHHhhhc----CCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHh
Q 009215 259 GFMAANEAIRQAAQ----GKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATS 334 (540)
Q Consensus 259 ahftANqAILEA~~----g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~ 334 (540)
+++++-..||..++ +-+--+|+|||-|-|. ++.-+...- +-..++|+|+.+.. +.++++.+..
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGt---a~wAa~~~~---~~~~~~~~vd~s~~-------~~~l~~~l~~ 79 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGT---ALWAAREVW---PSLKEYTCVDRSPE-------MLELAKRLLR 79 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHH---HHHHHHHHh---cCceeeeeecCCHH-------HHHHHHHHHh
Confidence 45667777777775 3345699999999883 222111111 13468999997653 2234444432
Q ss_pred cCCceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEeecCCCCCCc
Q 009215 335 LGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVEQDANHNGPF 413 (540)
Q Consensus 335 fgl~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvEqea~hnsp~ 413 (540)
-+-+..-.... ..+..+...+.+.+.| -+.+.|-.|.+ ..+..+++.+ ..++| ++|+||+.... +-.
T Consensus 80 ~~~~~~~~~~~-----~~~~~~~~~~~~~DLv--i~s~~L~EL~~---~~r~~lv~~LW~~~~~-~LVlVEpGt~~-Gf~ 147 (274)
T PF09243_consen 80 AGPNNRNAEWR-----RVLYRDFLPFPPDDLV--IASYVLNELPS---AARAELVRSLWNKTAP-VLVLVEPGTPA-GFR 147 (274)
T ss_pred cccccccchhh-----hhhhcccccCCCCcEE--EEehhhhcCCc---hHHHHHHHHHHHhccC-cEEEEcCCChH-HHH
Confidence 22111100000 0011111223233332 23444555544 4678888887 66677 88888876554 335
Q ss_pred hhHHHHHHH
Q 009215 414 FLGRFLESL 422 (540)
Q Consensus 414 F~~RF~EAL 422 (540)
.+.+.++.|
T Consensus 148 ~i~~aR~~l 156 (274)
T PF09243_consen 148 RIAEARDQL 156 (274)
T ss_pred HHHHHHHHH
Confidence 566666655
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=79.04 E-value=55 Score=31.41 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=28.4
Q ss_pred hHHHHhhhcC---CCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 264 NEAIRQAAQG---KDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 264 NqAILEA~~g---~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
.+.+++.+.. .+..+|+|+|.|.|. +...|+.+ + |..++|||+.+.
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~----~~~~l~~~--~-~~~~~~~~D~~~ 68 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGY----LTRALLKR--F-PQAEFIALDISA 68 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccH----HHHHHHHh--C-CCCcEEEEeChH
Confidence 3344444442 234689999999995 33344433 2 456799999764
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=78.88 E-value=19 Score=35.02 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred hhhHhhhHHHHhhhc--CCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhc
Q 009215 258 FGFMAANEAIRQAAQ--GKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSL 335 (540)
Q Consensus 258 fahftANqAILEA~~--g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~f 335 (540)
.++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+. .+||||+.+... .....+.+...
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s~~~------i~~a~~~~~~~ 100 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDISEQM------VQMARNRAQGR 100 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECCHHH------HHHHHHHHHhc
Confidence 345566667777776 2345799999999994 666666541 389999976432 22223334433
Q ss_pred CC--ceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHH-hcCCcEEEEE
Q 009215 336 GI--NLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIK-RLNPTLLTVV 403 (540)
Q Consensus 336 gl--~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir-~L~Pkvvvlv 403 (540)
+. +++|.... +. .+ . ..-+++ .+...++|+..+ ....+++.+. .++|.+++..
T Consensus 101 ~~~~~i~~~~~d--~~--~~-----~-~~fD~i--i~~~~l~~~~~~---~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 101 DVAGNVEFEVND--LL--SL-----C-GEFDIV--VCMDVLIHYPAS---DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CCCCceEEEECC--hh--hC-----C-CCcCEE--EEhhHHHhCCHH---HHHHHHHHHHHHhCCCEEEEE
Confidence 43 34443322 11 11 1 122333 334445666432 3556666665 4566666554
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=75.84 E-value=24 Score=35.42 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=61.8
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEe
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMI 344 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v 344 (540)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ | .++|||+.+... .+...+++++.|+.-...++
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~--g---~~v~~vD~s~~~------l~~a~~~~~~~g~~~~v~~~ 98 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL--G---HQVILCDLSAEM------IQRAKQAAEAKGVSDNMQFI 98 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc--C---CEEEEEECCHHH------HHHHHHHHHhcCCccceEEE
Confidence 34666665 344699999999993 55566665 2 489999976432 22334455555653333333
Q ss_pred eccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 009215 345 SEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVV 403 (540)
Q Consensus 345 ~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvvlv 403 (540)
...+. .+. ...++..=+|-|...|||+.+ +.+.+-...+-|+|.-.+++
T Consensus 99 ~~d~~--~l~----~~~~~~fD~V~~~~vl~~~~~----~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 99 HCAAQ--DIA----QHLETPVDLILFHAVLEWVAD----PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EcCHH--HHh----hhcCCCCCEEEehhHHHhhCC----HHHHHHHHHHHcCCCeEEEE
Confidence 32111 111 011222222335566777743 34444445678999988865
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=75.33 E-value=31 Score=34.36 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred hhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEE
Q 009215 263 ANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFS 342 (540)
Q Consensus 263 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~ 342 (540)
-+..+++.+.-.+.-+|+|+|.|.| .+...|+.+- |..++|||+.+... .+.|++..-++.|.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s~~~----------i~~a~~~~~~~~~~ 81 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSSPAM----------LAEARSRLPDCQFV 81 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECCHHH----------HHHHHHhCCCCeEE
Confidence 3556677766555678999999999 3445666552 34689999986431 11121111123332
Q ss_pred EeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEee
Q 009215 343 MISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQ 405 (540)
Q Consensus 343 ~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvEq 405 (540)
... +. .+.. ..+=+. |-|...||++.+ +...+-+..+.|+|.-.+++.-
T Consensus 82 ~~d--~~--~~~~----~~~fD~--v~~~~~l~~~~d----~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 82 EAD--IA--SWQP----PQALDL--IFANASLQWLPD----HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ECc--hh--ccCC----CCCccE--EEEccChhhCCC----HHHHHHHHHHhcCCCcEEEEEC
Confidence 211 11 1110 011133 345566788754 3344444558889999887753
No 35
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=74.15 E-value=38 Score=36.17 Aligned_cols=118 Identities=14% Similarity=0.224 Sum_probs=64.1
Q ss_pred hHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEE
Q 009215 264 NEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSM 343 (540)
Q Consensus 264 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~ 343 (540)
.+.+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+|+.+... .+..-+.++..++..++
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~A------l~~A~~nl~~n~l~~~~-- 249 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAA------LESSRATLAANGLEGEV-- 249 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHH------HHHHHHHHHHcCCCCEE--
Confidence 3455555543323379999999995 444555542 45789999986432 22222334444554333
Q ss_pred eeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEee
Q 009215 344 ISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQA-IKRLNPTLLTVVEQ 405 (540)
Q Consensus 344 v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~-Ir~L~PkvvvlvEq 405 (540)
+...+ +. .+ -.+=+.|+.|-+| |.-........+.+++. .+.|+|.-...+..
T Consensus 250 ~~~D~----~~--~~-~~~fDlIvsNPPF--H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 250 FASNV----FS--DI-KGRFDMIISNPPF--HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred EEccc----cc--cc-CCCccEEEECCCc--cCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 32111 11 11 1234678888776 44333222345666665 57799987775543
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=72.97 E-value=6.1 Score=40.36 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=32.7
Q ss_pred CCCeeEEEEccCCCCCchHHHHHHHhcCCC--CCCeEEEeEecCCCC
Q 009215 273 GKDSLHIIDLGMERTLQWPSLIRSLASRPE--GPPRIRITCLISNQN 317 (540)
Q Consensus 273 g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~--GPP~LRITgI~~~~~ 317 (540)
..+.++|.|.|.+.|--.-+|--.|+..-. ..+..+|||++.+..
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~ 143 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK 143 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH
Confidence 345699999999999887777555554321 134789999998754
No 37
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=72.25 E-value=1.3e+02 Score=31.61 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCCcchhhhHh-------------hhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeE
Q 009215 241 EKMEAFQLVYQTTPYISFGFMA-------------ANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRI 307 (540)
Q Consensus 241 ~~~~A~~~f~e~sP~~kfahft-------------ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~L 307 (540)
.....+..+....||-+-.+.. --+.|+..+..-+--+|+|+|.|.|. ++..++.+ |+-
T Consensus 75 ~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g~~-- 146 (322)
T PRK15068 75 QRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--GAK-- 146 (322)
T ss_pred HHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--
Confidence 3333455555666664443221 12334445542223479999999993 33455554 322
Q ss_pred EEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHH
Q 009215 308 RITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKA 387 (540)
Q Consensus 308 RITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~ 387 (540)
+++||+++... +.. .+...+.+. -..++.|.... + +++.. ++-.=+|-|...|||+. ++.+.
T Consensus 147 ~V~GiD~S~~~--l~q-~~a~~~~~~-~~~~i~~~~~d--~-------e~lp~-~~~FD~V~s~~vl~H~~----dp~~~ 208 (322)
T PRK15068 147 LVVGIDPSQLF--LCQ-FEAVRKLLG-NDQRAHLLPLG--I-------EQLPA-LKAFDTVFSMGVLYHRR----SPLDH 208 (322)
T ss_pred EEEEEcCCHHH--HHH-HHHHHHhcC-CCCCeEEEeCC--H-------HHCCC-cCCcCEEEECChhhccC----CHHHH
Confidence 49999975421 100 001111111 01234443221 1 11211 12111333555678863 35555
Q ss_pred HHHHHHhcCCcEEEEEe
Q 009215 388 ILQAIKRLNPTLLTVVE 404 (540)
Q Consensus 388 ~L~~Ir~L~PkvvvlvE 404 (540)
+-+.-+.|+|.-.++.+
T Consensus 209 L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 209 LKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 55566889998777665
No 38
>PRK05785 hypothetical protein; Provisional
Probab=69.77 E-value=91 Score=30.99 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=49.8
Q ss_pred eeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcc
Q 009215 276 SLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTR 355 (540)
Q Consensus 276 ~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~ 355 (540)
.-.|+|+|.|.|. +...|+.+.+ .++|||+.+.... + . |+.-+ ++ +.. +.
T Consensus 52 ~~~VLDlGcGtG~----~~~~l~~~~~----~~v~gvD~S~~Ml--~-----~---a~~~~---~~--~~~-------d~ 101 (226)
T PRK05785 52 PKKVLDVAAGKGE----LSYHFKKVFK----YYVVALDYAENML--K-----M---NLVAD---DK--VVG-------SF 101 (226)
T ss_pred CCeEEEEcCCCCH----HHHHHHHhcC----CEEEEECCCHHHH--H-----H---HHhcc---ce--EEe-------ch
Confidence 3479999999994 3445555431 4899999865321 1 1 11101 11 111 11
Q ss_pred cccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 009215 356 ENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVE 404 (540)
Q Consensus 356 ~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvE 404 (540)
..+...++..=+|-+.+.|||+.+ .+.+|+.+ |-|+|.++ ++|
T Consensus 102 ~~lp~~d~sfD~v~~~~~l~~~~d-----~~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 102 EALPFRDKSFDVVMSSFALHASDN-----IEKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred hhCCCCCCCEEEEEecChhhccCC-----HHHHHHHHHHHhcCceE-EEE
Confidence 123333444445666677888643 34555554 67789543 444
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=65.96 E-value=13 Score=31.13 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=22.5
Q ss_pred EEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCCh
Q 009215 280 IDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNL 318 (540)
Q Consensus 280 IDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~ 318 (540)
+|+|.|.|.==..|++.+ |..++||++.+...
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~ 32 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSM 32 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSST
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHH
Confidence 588888886555566555 89999999998653
No 40
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=65.65 E-value=45 Score=32.29 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=50.2
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCC--ceeEEEeeccCCCCC
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI--NLEFSMISEPVTPSL 352 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl--~~eF~~v~~~~~~~~ 352 (540)
..-.|+|+|.|.|. +...|+.+ + .++|||+.+... .+...+++...++ .+.|.... +..
T Consensus 63 ~~~~vLDvGcG~G~----~~~~l~~~--~---~~v~~~D~s~~~------i~~a~~~~~~~~~~~~i~~~~~d--~~~-- 123 (230)
T PRK07580 63 TGLRILDAGCGVGS----LSIPLARR--G---AKVVASDISPQM------VEEARERAPEAGLAGNITFEVGD--LES-- 123 (230)
T ss_pred CCCEEEEEeCCCCH----HHHHHHHc--C---CEEEEEECCHHH------HHHHHHHHHhcCCccCcEEEEcC--chh--
Confidence 44689999999994 33445543 2 249999986432 2222333444444 33333322 110
Q ss_pred CcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCc-EEEE
Q 009215 353 LTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPT-LLTV 402 (540)
Q Consensus 353 l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pk-vvvl 402 (540)
. ...-+.++ +...+||+.+. ....+++.+.++.+. ++++
T Consensus 124 ~------~~~fD~v~--~~~~l~~~~~~---~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 L------LGRFDTVV--CLDVLIHYPQE---DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred c------cCCcCEEE--EcchhhcCCHH---HHHHHHHHHHhhcCCeEEEE
Confidence 0 01123333 34445776543 467777777665444 4443
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=64.42 E-value=48 Score=34.26 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred hhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc--ee
Q 009215 263 ANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN--LE 340 (540)
Q Consensus 263 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~--~e 340 (540)
-...|++.+.=+.-=||+|+|.| |-.++..+|.|-| .++|||..+.. -.+...++++..|+. ++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~------Q~~~a~~~~~~~gl~~~v~ 115 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEE------QAEYARERIREAGLEDRVE 115 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HH------HHHHHHHHHHCSTSSSTEE
T ss_pred HHHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHH------HHHHHHHHHHhcCCCCceE
Confidence 34566777654445599999866 5589999998863 58999997642 123455667777765 33
Q ss_pred EEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 009215 341 FSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVE 404 (540)
Q Consensus 341 F~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvE 404 (540)
+.... ..+++ . +-++ |-++-.+-|+.. ...+.|++.| +-|+|.-.+++.
T Consensus 116 v~~~D----~~~~~-----~-~fD~--IvSi~~~Ehvg~---~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 116 VRLQD----YRDLP-----G-KFDR--IVSIEMFEHVGR---KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEES-----GGG---------S-SE--EEEESEGGGTCG---GGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEee----ccccC-----C-CCCE--EEEEechhhcCh---hHHHHHHHHHHHhcCCCcEEEEE
Confidence 33321 11111 1 2223 223333456532 3578888888 778999888764
No 42
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=62.99 E-value=1.5e+02 Score=28.80 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=23.3
Q ss_pred CCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 273 GKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 273 g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
.....+|+|+|.|.|. +...|+.+ + .++|+|+.+.
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~--~---~~v~~iD~s~ 80 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL--G---ADVTGIDASE 80 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc--C---CeEEEEcCCH
Confidence 3345689999999885 33344443 2 3699998864
No 43
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=61.17 E-value=71 Score=31.52 Aligned_cols=111 Identities=20% Similarity=0.177 Sum_probs=60.3
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEe
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMI 344 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v 344 (540)
..++++..=...-+|||+|-+.| .+..+|+.+- |.||+|..+.|... +..++ .-.++|...
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp~v~----~~~~~--------~~rv~~~~g 150 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLPEVI----EQAKE--------ADRVEFVPG 150 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-HHHH----CCHHH--------TTTEEEEES
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccHhhh----hcccc--------ccccccccc
Confidence 55666766555568999999999 3444444432 78899999986421 11111 223333332
Q ss_pred eccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCc---EEEEEeecCCC
Q 009215 345 SEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPT---LLTVVEQDANH 409 (540)
Q Consensus 345 ~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pk---vvvlvEqea~h 409 (540)
. . + +.+. . +=+|-...-||...++ ....+|+.+ ++|+|. .++++|.=.+.
T Consensus 151 d--~----f--~~~P---~-~D~~~l~~vLh~~~d~---~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 151 D--F----F--DPLP---V-ADVYLLRHVLHDWSDE---DCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp ---T----T--TCCS---S-ESEEEEESSGGGS-HH---HHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred c--H----H--hhhc---c-ccceeeehhhhhcchH---HHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 2 1 1 1121 1 3345555667777765 445556554 788986 66666764443
No 44
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=60.98 E-value=1.8e+02 Score=28.83 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=31.8
Q ss_pred HhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 261 MAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 261 ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
...-+.+++.+.....-.|+|+|.|.|. +.+.|+.+ + -++|||+.+.
T Consensus 28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~ 74 (251)
T PRK10258 28 RQSADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSP 74 (251)
T ss_pred HHHHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCH
Confidence 3344556666665444579999999993 55667654 2 4799999764
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=60.42 E-value=1.1e+02 Score=30.33 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEe
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMI 344 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v 344 (540)
..|++|+.--+.--++|+|.|.|. =---||.+ -..+|+++.+.. .++.+.+.|+.-++++.....
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GR----NalyLA~~-----G~~VtAvD~s~~------al~~l~~~a~~~~l~i~~~~~ 84 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGR----NALYLASQ-----GFDVTAVDISPV------ALEKLQRLAEEEGLDIRTRVA 84 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSH----HHHHHHHT-----T-EEEEEESSHH------HHHHHHHHHHHTT-TEEEEE-
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcH----HHHHHHHC-----CCeEEEEECCHH------HHHHHHHHHhhcCceeEEEEe
Confidence 446677765566689999999983 12235554 378999998642 356677788887888666654
Q ss_pred eccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHH-hcCCcEEEEE
Q 009215 345 SEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIK-RLNPTLLTVV 403 (540)
Q Consensus 345 ~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir-~L~Pkvvvlv 403 (540)
.. . ...+ +++.=+|.+...+++|..+ .++.+++.++ .++|-.+.+.
T Consensus 85 Dl-------~--~~~~-~~~yD~I~st~v~~fL~~~---~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 85 DL-------N--DFDF-PEEYDFIVSTVVFMFLQRE---LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp BG-------C--CBS--TTTEEEEEEESSGGGS-GG---GHHHHHHHHHHTEEEEEEEEE
T ss_pred cc-------h--hccc-cCCcCEEEEEEEeccCCHH---HHHHHHHHHHhhcCCcEEEEE
Confidence 31 1 1122 2333356666777888643 6888888875 5799766544
No 46
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=60.30 E-value=73 Score=30.45 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 266 AIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 266 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
.|.+.+... -+|+|+|.|.|. +...|+.+.+ .+++||+.+.
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~ 46 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQ 46 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCH
Confidence 345555432 379999999994 5667775532 3568998753
No 47
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=58.44 E-value=1.2e+02 Score=32.15 Aligned_cols=44 Identities=9% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
.+|++.+...+.=+|+|+|.|.|. ++..++.+ |+ . +++||+++.
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~-~-~v~GiDpS~ 154 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA-K-SLVGIDPTV 154 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC-C-EEEEEcCCH
Confidence 345655543333489999999995 44445543 33 2 789999865
No 48
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=58.40 E-value=1.3e+02 Score=29.68 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=60.5
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRE 356 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~ 356 (540)
-.|+|++.|.| .--+.+|+.. . -++|+|+.+... .+.+.+-++..++. ...++...+. ..+..
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~---a--~~V~~vE~~~~a------~~~a~~Nl~~~~~~-~v~~~~~D~~-~~l~~- 117 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY---A--AGATLLEMDRAV------AQQLIKNLATLKAG-NARVVNTNAL-SFLAQ- 117 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC---C--CEEEEEECCHHH------HHHHHHHHHHhCCC-cEEEEEchHH-HHHhh-
Confidence 36899999998 2234456542 1 389999876432 22233344555543 2333332111 00110
Q ss_pred ccCccCCceEEEEeccccccccccccchHHHHHHHHHh---cCCcEEEEEeecCCC
Q 009215 357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKR---LNPTLLTVVEQDANH 409 (540)
Q Consensus 357 ~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~---L~PkvvvlvEqea~h 409 (540)
. -.+-+.|++|=+|+ .+..+.++..|.. |+|.-++.+|.....
T Consensus 118 -~-~~~fDlV~~DPPy~--------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 118 -P-GTPHNVVFVDPPFR--------KGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred -c-CCCceEEEECCCCC--------CChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 0 11236788887763 2456678888877 699999999977654
No 49
>PRK06922 hypothetical protein; Provisional
Probab=58.25 E-value=58 Score=38.07 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=57.3
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRE 356 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~ 356 (540)
-.|+|+|.|.| .+...|+.+. |..++|||+.+... .+...+.+...+.+ ++++..... .+.
T Consensus 420 ~rVLDIGCGTG----~ls~~LA~~~---P~~kVtGIDIS~~M------Le~Ararl~~~g~~--ie~I~gDa~--dLp-- 480 (677)
T PRK06922 420 DTIVDVGAGGG----VMLDMIEEET---EDKRIYGIDISENV------IDTLKKKKQNEGRS--WNVIKGDAI--NLS-- 480 (677)
T ss_pred CEEEEeCCCCC----HHHHHHHHhC---CCCEEEEEECCHHH------HHHHHHHhhhcCCC--eEEEEcchH--hCc--
Confidence 47999999999 3455666552 56899999987532 22222233333333 333321110 110
Q ss_pred ccCccCCceEEEEeccccccccccc--------cchHHHHHHH-HHhcCCcEEEEE
Q 009215 357 NLDLREGEALFVNSIMHLHKYVKES--------RGSLKAILQA-IKRLNPTLLTVV 403 (540)
Q Consensus 357 ~L~i~~~EaLaVN~~~~LH~L~~es--------~~~r~~~L~~-Ir~L~Pkvvvlv 403 (540)
. .+.++.+=+|-+.+.+|++.+-- ......+|+. .+.|+|.-.+++
T Consensus 481 ~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 481 S-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred c-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 0 12344444455666678774210 1234556655 489999866654
No 50
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=58.04 E-value=61 Score=34.55 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=58.8
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHH-----hcCCceeEEEeeccCC
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDAT-----SLGINLEFSMISEPVT 349 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~-----~fgl~~eF~~v~~~~~ 349 (540)
...+|+|++.|.|. .|.+-...+. =++.||+.... .++++.++..+.-+ .....|.-.++.....
T Consensus 62 ~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis~~--si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 62 PGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDISEE--SIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HH--HHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCCHH--HHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 67899999999884 3333333322 25677877532 23333333211111 1112233333332111
Q ss_pred CCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 009215 350 PSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVV 403 (540)
Q Consensus 350 ~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvlv 403 (540)
...+. +.+....+..=+|+|+|+||..... ....+.+|+.| ..|+|--+++.
T Consensus 132 ~~~l~-~~~~~~~~~FDvVScQFalHY~Fes-e~~ar~~l~Nvs~~Lk~GG~FIg 184 (331)
T PF03291_consen 132 SESLR-EKLPPRSRKFDVVSCQFALHYAFES-EEKARQFLKNVSSLLKPGGYFIG 184 (331)
T ss_dssp CSHHH-CTSSSTTS-EEEEEEES-GGGGGSS-HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cchhh-hhccccCCCcceeehHHHHHHhcCC-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 11111 1122223477799999999999864 45566677766 78899877654
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=57.86 E-value=85 Score=33.99 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=29.3
Q ss_pred hHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 264 NEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 264 NqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
-..|++.+.-...=+|+|+|.|.|. +...|+.+.+ .++|||+.+.
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~ 200 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISA 200 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCH
Confidence 3455555543344589999988773 5555665543 3899998864
No 52
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=55.73 E-value=21 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=25.4
Q ss_pred eEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 009215 365 ALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVV 403 (540)
Q Consensus 365 aLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvvlv 403 (540)
.+-|||....-++... ..++.+++.|+.++|+-+++|
T Consensus 2 ~i~v~a~v~~~~fSgH--ad~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGH--ADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp EEE--SEEEESGCSSS---BHHHHHHHHHHHCSSEEEEE
T ss_pred EEEeEEEEEEEeecCC--CCHHHHHHHHHhcCCCEEEEe
Confidence 4556665544334443 578999999999999999988
No 53
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=53.16 E-value=1.3e+02 Score=30.26 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=50.1
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRE 356 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~ 356 (540)
=+|+|+|.|.|.-.. + ++... .|.-+||||+.+... .+...+.++.++++ ...++...+.
T Consensus 79 ~~VLDiG~G~G~~~~-~---~a~~~--g~~~~v~gvD~s~~~------l~~A~~~~~~~g~~-~v~~~~~d~~------- 138 (272)
T PRK11873 79 ETVLDLGSGGGFDCF-L---AARRV--GPTGKVIGVDMTPEM------LAKARANARKAGYT-NVEFRLGEIE------- 138 (272)
T ss_pred CEEEEeCCCCCHHHH-H---HHHHh--CCCCEEEEECCCHHH------HHHHHHHHHHcCCC-CEEEEEcchh-------
Confidence 389999999984222 1 22211 144589999986431 22222334445542 2223321111
Q ss_pred ccCccCC--ceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 009215 357 NLDLREG--EALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVV 403 (540)
Q Consensus 357 ~L~i~~~--EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvvlv 403 (540)
.+.+..+ +.|+.|+.+ |+..+ ..+.+=...|-|+|.-.+++
T Consensus 139 ~l~~~~~~fD~Vi~~~v~--~~~~d----~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 139 ALPVADNSVDVIISNCVI--NLSPD----KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred hCCCCCCceeEEEEcCcc--cCCCC----HHHHHHHHHHHcCCCcEEEE
Confidence 1222222 345556554 55432 33444445688999876654
No 54
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=52.31 E-value=1.4e+02 Score=32.62 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=57.1
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc--eeEEEeeccCCCCCCcc
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN--LEFSMISEPVTPSLLTR 355 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~--~eF~~v~~~~~~~~l~~ 355 (540)
.|+|+|.|.|. +--.|+.+. |..+||+|+.+... ++.+. +.++..+.. -.++++.... ++
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~A--v~~A~----~N~~~n~~~~~~~v~~~~~D~----l~- 292 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMA--VASSR----LNVETNMPEALDRCEFMINNA----LS- 292 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHH--HHHHH----HHHHHcCcccCceEEEEEccc----cc-
Confidence 79999999995 444555552 67899999987432 11111 122222221 1233332111 11
Q ss_pred cccCccCCceEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEEee
Q 009215 356 ENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQ-AIKRLNPTLLTVVEQ 405 (540)
Q Consensus 356 ~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~-~Ir~L~PkvvvlvEq 405 (540)
.+.-..=+.|+.|-.|+..+-... .....+++ .-+.|+|.-.+.++.
T Consensus 293 -~~~~~~fDlIlsNPPfh~~~~~~~--~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 293 -GVEPFRFNAVLCNPPFHQQHALTD--NVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cCCCCCEEEEEECcCcccCccCCH--HHHHHHHHHHHHhcccCCEEEEEE
Confidence 111112367888888865442222 22344554 457889998887663
No 55
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=49.57 E-value=53 Score=33.75 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=64.7
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCc
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLT 354 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~ 354 (540)
...-|+|+|.|-| .|-+.||+.. ..+|||+-.... ++.-...|.+-|+.++|.....
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~G-----a~VtgiD~se~~------I~~Ak~ha~e~gv~i~y~~~~~-------- 115 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARLG-----ASVTGIDASEKP------IEVAKLHALESGVNIDYRQATV-------- 115 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHCC-----CeeEEecCChHH------HHHHHHhhhhccccccchhhhH--------
Confidence 4567999999999 7888888642 899999986532 2333445666667766665541
Q ss_pred ccccCccCCceEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEEE
Q 009215 355 RENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQ-AIKRLNPTLLTVV 403 (540)
Q Consensus 355 ~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~-~Ir~L~Pkvvvlv 403 (540)
++|.-..+-.=||-|+=-|+|+.+. .. |++ ..+-++|--+++.
T Consensus 116 -edl~~~~~~FDvV~cmEVlEHv~dp----~~-~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 116 -EDLASAGGQFDVVTCMEVLEHVPDP----ES-FLRACAKLVKPGGILFL 159 (243)
T ss_pred -HHHHhcCCCccEEEEhhHHHccCCH----HH-HHHHHHHHcCCCcEEEE
Confidence 1111111334467788889998664 33 555 5577899877654
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=48.19 E-value=1.8e+02 Score=27.98 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=51.4
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRE 356 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~ 356 (540)
-+|+|+|.|.|.- ++. ||.+ .|..++|||+.+... .+.+.+.+++.+++ .++++...+. ++..
T Consensus 44 ~~vLDiGcGtG~~--s~~--la~~---~~~~~V~~iD~s~~~------~~~a~~~~~~~~~~-~i~~i~~d~~--~~~~- 106 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GIP--LAIA---RPELKLTLLESNHKK------VAFLREVKAELGLN-NVEIVNGRAE--DFQH- 106 (181)
T ss_pred CeEEEecCCCCcc--HHH--HHHH---CCCCeEEEEeCcHHH------HHHHHHHHHHhCCC-CeEEEecchh--hccc-
Confidence 4899999999932 221 1211 144689999987532 22233455566653 2444442221 1110
Q ss_pred ccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 009215 357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVE 404 (540)
Q Consensus 357 ~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvE 404 (540)
..+=+.|+.|+ +|+ .+.+++.+ +-|+|.-.+++.
T Consensus 107 ---~~~fD~I~s~~---~~~--------~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 ---EEQFDVITSRA---LAS--------LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ---cCCccEEEehh---hhC--------HHHHHHHHHHhcCCCCEEEEE
Confidence 11224666554 333 23455554 558999888875
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=47.22 E-value=59 Score=31.31 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=56.3
Q ss_pred eeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcc
Q 009215 276 SLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTR 355 (540)
Q Consensus 276 ~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~ 355 (540)
.--|+|+|.|.| .++-.||.+- |...++||+..... .+...+.++..++. ..+++...+. .+..
T Consensus 17 ~~~ilDiGcG~G----~~~~~la~~~---p~~~v~gvD~~~~~------l~~a~~~~~~~~l~-ni~~i~~d~~--~~~~ 80 (194)
T TIGR00091 17 APLHLEIGCGKG----RFLIDMAKQN---PDKNFLGIEIHTPI------VLAANNKANKLGLK-NLHVLCGDAN--ELLD 80 (194)
T ss_pred CceEEEeCCCcc----HHHHHHHHhC---CCCCEEEEEeeHHH------HHHHHHHHHHhCCC-CEEEEccCHH--HHHH
Confidence 347999999998 4555666552 56789999986532 23334445555553 2333332111 0100
Q ss_pred cccCccCCceEEEEecccccccccc-ccchHHHHHHHH-HhcCCcEEEEEee
Q 009215 356 ENLDLREGEALFVNSIMHLHKYVKE-SRGSLKAILQAI-KRLNPTLLTVVEQ 405 (540)
Q Consensus 356 ~~L~i~~~EaLaVN~~~~LH~L~~e-s~~~r~~~L~~I-r~L~PkvvvlvEq 405 (540)
..+.-..=+.+++|+..--+.-... .+-..+.+|+.+ +.|+|.-.+.+..
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred hhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 0010001135556653211000000 001125677765 7789988876643
No 58
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=46.34 E-value=43 Score=30.62 Aligned_cols=42 Identities=26% Similarity=0.488 Sum_probs=30.1
Q ss_pred hcCCCeeEEEEccCCCCCchHHHHHHHhcC--CCCCCeEEEeEecCCCC
Q 009215 271 AQGKDSLHIIDLGMERTLQWPSLIRSLASR--PEGPPRIRITCLISNQN 317 (540)
Q Consensus 271 ~~g~~~VHIIDfgI~~G~QWpsLiqaLA~R--p~GPP~LRITgI~~~~~ 317 (540)
-...+..+|||+|-|.|. |=+.||.. .. .|.++|+||+.+..
T Consensus 21 ~~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~-~~~~~v~~iD~~~~ 64 (141)
T PF13679_consen 21 GESKRCITVVDLGSGKGY----LSRALAHLLCNS-SPNLRVLGIDCNES 64 (141)
T ss_pred hccCCCCEEEEeCCChhH----HHHHHHHHHHhc-CCCCeEEEEECCcH
Confidence 345778999999999983 44445541 11 28899999998754
No 59
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=44.86 E-value=1.6e+02 Score=28.52 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=53.3
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccc
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTREN 357 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~ 357 (540)
+|+|+|.|.|. +...++.+- |..++|||+.+... .+...++++..|+.-...++........+.
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~------~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~--- 65 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQ------AEVGRERIRALGLQGRIRIFYRDSAKDPFP--- 65 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHH------HHHHHHHHHhcCCCcceEEEecccccCCCC---
Confidence 68999999884 344555543 34689999975321 222334455555544344443222111110
Q ss_pred cCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEE
Q 009215 358 LDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVV 403 (540)
Q Consensus 358 L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~Pkvvvlv 403 (540)
..-+. |-+...+||+.+ .+.+|+.+ +.|+|.-.+++
T Consensus 66 ---~~fD~--I~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 66 ---DTYDL--VFGFEVIHHIKD-----KMDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred ---CCCCE--eehHHHHHhCCC-----HHHHHHHHHHHcCCCCEEEE
Confidence 11123 334455677632 45677766 66899977754
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=44.68 E-value=1.3e+02 Score=29.19 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=55.2
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCC-ceeEEEeeccCCCCCC
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI-NLEFSMISEPVTPSLL 353 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl-~~eF~~v~~~~~~~~l 353 (540)
+.-.|+|+|.|.|.-... |+.+. |.-++|||+.+.+. .+...+.++..++ ++.| +...+. +.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~----la~~~---p~~~v~gVD~s~~~------i~~a~~~~~~~~~~~v~~--~~~d~~-~~l 103 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVE----MAKAN---PDINFIGIEVHEPG------VGKALKKIEEEGLTNLRL--LCGDAV-EVL 103 (202)
T ss_pred CCCeEEEEccCCCHHHHH----HHHHC---CCccEEEEEechHH------HHHHHHHHHHcCCCCEEE--EecCHH-HHH
Confidence 446799999999955444 44332 45689999987642 2233344444454 3333 321110 011
Q ss_pred cccccCccCCceEEEEecccccccccc-ccchHHHHHHHH-HhcCCcEEEEE
Q 009215 354 TRENLDLREGEALFVNSIMHLHKYVKE-SRGSLKAILQAI-KRLNPTLLTVV 403 (540)
Q Consensus 354 ~~~~L~i~~~EaLaVN~~~~LH~L~~e-s~~~r~~~L~~I-r~L~Pkvvvlv 403 (540)
.. .+.-..=+.+++|.....++.... .....+.+|+.+ +.|+|.-++++
T Consensus 104 ~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 104 LD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 10 011111245566544322211110 011246677776 58999877655
No 61
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=44.02 E-value=2.1e+02 Score=30.15 Aligned_cols=114 Identities=12% Similarity=0.134 Sum_probs=66.8
Q ss_pred HhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc--
Q 009215 261 MAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN-- 338 (540)
Q Consensus 261 ftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~-- 338 (540)
+..=..|++-+.=+.--||+|||.| |-+|+.-.|.+-+ .++|||+.+.+- ....-+++++.|+.
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS~~Q------~~~~~~r~~~~gl~~~ 123 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLSEEQ------LAYAEKRIAARGLEDN 123 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCCHHH------HHHHHHHHHHcCCCcc
Confidence 3344455565555556799999854 6689999998763 689999886531 23355567777755
Q ss_pred eeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHH-hcCCcEEEEE
Q 009215 339 LEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIK-RLNPTLLTVV 403 (540)
Q Consensus 339 ~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir-~L~Pkvvvlv 403 (540)
+++.... ..+++.. .=.|-++=.++|+-. ..-+.|++.++ -|+|.-..+.
T Consensus 124 v~v~l~d----~rd~~e~--------fDrIvSvgmfEhvg~---~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 124 VEVRLQD----YRDFEEP--------FDRIVSVGMFEHVGK---ENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred cEEEecc----ccccccc--------cceeeehhhHHHhCc---ccHHHHHHHHHhhcCCCceEEE
Confidence 3333322 1111110 112334444566643 35788888885 4677665543
No 62
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=43.07 E-value=87 Score=32.11 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=68.3
Q ss_pred hcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCC
Q 009215 271 AQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTP 350 (540)
Q Consensus 271 ~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~ 350 (540)
+.-+.---|+|+|.|-|.+ -+-|++|= |.=.||||+++.+ ....|+.-..+..|..-..
T Consensus 26 Vp~~~~~~v~DLGCGpGns----TelL~~Rw---P~A~i~GiDsS~~----------Mla~Aa~rlp~~~f~~aDl---- 84 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNS----TELLARRW---PDAVITGIDSSPA----------MLAKAAQRLPDATFEEADL---- 84 (257)
T ss_pred CCccccceeeecCCCCCHH----HHHHHHhC---CCCeEeeccCCHH----------HHHHHHHhCCCCceecccH----
Confidence 3344556799999999954 44566664 5668999998753 2223344445666644321
Q ss_pred CCCcccccCcc-CCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEeecCCCCCC
Q 009215 351 SLLTRENLDLR-EGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVEQDANHNGP 412 (540)
Q Consensus 351 ~~l~~~~L~i~-~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvEqea~hnsp 412 (540)
..++.. +-..|.-|++| |-|++ ..+.|=+.+-.|.|.-+.-|---.|+..|
T Consensus 85 -----~~w~p~~~~dllfaNAvl--qWlpd----H~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 85 -----RTWKPEQPTDLLFANAVL--QWLPD----HPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred -----hhcCCCCccchhhhhhhh--hhccc----cHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 112221 23566667766 45554 46777788899999999888665565444
No 63
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=43.03 E-value=1.1e+02 Score=32.87 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=82.5
Q ss_pred HHHHhhhcCCCee-EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEE
Q 009215 265 EAIRQAAQGKDSL-HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSM 343 (540)
Q Consensus 265 qAILEA~~g~~~V-HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~ 343 (540)
..|++...|-+.| -.||.|-|-| .++..|.. -.|+++++-.+.+. +.+-|..++-++++-+
T Consensus 166 ~~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~---~fp~ik~infdlp~-----------v~~~a~~~~~gV~~v~ 227 (342)
T KOG3178|consen 166 KKILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS---KYPHIKGINFDLPF-----------VLAAAPYLAPGVEHVA 227 (342)
T ss_pred HhhhhhhcccccCceEEEcCCcHh----HHHHHHHH---hCCCCceeecCHHH-----------HHhhhhhhcCCcceec
Confidence 3566777775544 4589998877 45555554 24665555554432 2222222221111111
Q ss_pred eeccCCCCCCccccc-CccCCceEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEE-eecCCCCCCchhHHHHH
Q 009215 344 ISEPVTPSLLTRENL-DLREGEALFVNSIMHLHKYVKESRGSLKAILQA-IKRLNPTLLTVV-EQDANHNGPFFLGRFLE 420 (540)
Q Consensus 344 v~~~~~~~~l~~~~L-~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~-Ir~L~Pkvvvlv-Eqea~hnsp~F~~RF~E 420 (540)
- ++| .+-+++++.+-+ -|||+.|+ ..-.||++ -++|.|+-.|++ |.-.+.. ..
T Consensus 228 g-----------dmfq~~P~~daI~mkW--iLhdwtDe---dcvkiLknC~~sL~~~GkIiv~E~V~p~e-~~------- 283 (342)
T KOG3178|consen 228 G-----------DMFQDTPKGDAIWMKW--ILHDWTDE---DCVKILKNCKKSLPPGGKIIVVENVTPEE-DK------- 283 (342)
T ss_pred c-----------cccccCCCcCeEEEEe--ecccCChH---HHHHHHHHHHHhCCCCCEEEEEeccCCCC-CC-------
Confidence 1 111 133566655555 46999986 44455555 588999877755 5434431 11
Q ss_pred HHHHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHHHHHHhhc-CCCccccccchHHHHHHHhcCCCeeec
Q 009215 421 SLHYYSAIFDSLEASLPRNSPLRMNIERLHFAEEIRNIVAYE-GSDRIERHERAHQWRRQLGRAGFQLVG 489 (540)
Q Consensus 421 AL~yYsAlFDSLea~lp~~s~eR~~iE~~~lg~eI~NiVAcE-G~~RvERhE~~~~Wr~rm~rAGF~~vp 489 (540)
||-+++..-++ . .+.-.+-|+ |-+|+ ..+|+..+..+||....
T Consensus 284 --------~dd~~s~v~~~--------~-----d~lm~~~~~~Gkert-----~~e~q~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 284 --------FDDIDSSVTRD--------M-----DLLMLTQTSGGKERT-----LKEFQALLPEEGFPVCM 327 (342)
T ss_pred --------ccccccceeeh--------h-----HHHHHHHhccceecc-----HHHHHhcchhhcCceeE
Confidence 12222221111 1 111123355 67765 57899999999997754
No 64
>PRK14968 putative methyltransferase; Provisional
Probab=42.71 E-value=2.8e+02 Score=25.62 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=23.3
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
-.|+|+|.|.|. +...|+.+ ..+|||++.+.
T Consensus 25 ~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s~ 55 (188)
T PRK14968 25 DRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDINP 55 (188)
T ss_pred CEEEEEccccCH----HHHHHHhh-----cceEEEEECCH
Confidence 469999999997 55566665 24899999764
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=39.77 E-value=97 Score=26.37 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
+|+|+|.|.|. +...|+.+. |..++|||+.+.
T Consensus 22 ~vldlG~G~G~----~~~~l~~~~---~~~~v~~vD~s~ 53 (124)
T TIGR02469 22 VLWDIGAGSGS----ITIEAARLV---PNGRVYAIERNP 53 (124)
T ss_pred EEEEeCCCCCH----HHHHHHHHC---CCceEEEEcCCH
Confidence 89999999984 344445442 337899999865
No 66
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=36.95 E-value=55 Score=32.32 Aligned_cols=53 Identities=15% Similarity=0.417 Sum_probs=37.0
Q ss_pred hhhcCCCeeEEEEccCCCC---CchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCC
Q 009215 269 QAAQGKDSLHIIDLGMERT---LQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI 337 (540)
Q Consensus 269 EA~~g~~~VHIIDfgI~~G---~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl 337 (540)
-+++=.+.=|++|+|.+.| ++|. ++ .|..|+++|+.+.. ..+.+.+-+++||+
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~~~~------a~~~~~~N~~~fg~ 83 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIERDEE------ALELIERNAARFGV 83 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEecCHH------HHHHHHHHHHHhCC
Confidence 3444333349999999988 5665 22 38899999998653 34557778888884
No 67
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=35.95 E-value=3.5e+02 Score=29.71 Aligned_cols=108 Identities=13% Similarity=0.183 Sum_probs=58.4
Q ss_pred hhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc-eeEEEeecc
Q 009215 269 QAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN-LEFSMISEP 347 (540)
Q Consensus 269 EA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~-~eF~~v~~~ 347 (540)
+.+.-...-+|+|+|.|.|. +--.||.+. -+++||+.+... .+...+.++..++. +.|..-.
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~a------l~~A~~n~~~~~~~~v~~~~~d-- 353 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEAM------VERARENARRNGLDNVTFYHAN-- 353 (443)
T ss_pred HHhcCCCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHHH------HHHHHHHHHHcCCCceEEEEeC--
Confidence 33333344689999999994 333466542 379999986532 22333445555653 3333322
Q ss_pred CCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 009215 348 VTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVE 404 (540)
Q Consensus 348 ~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvE 404 (540)
+.. .+....+.-..-++|++|=.. .....++..|.+++|+-++.+.
T Consensus 354 ~~~-~l~~~~~~~~~fD~Vi~dPPr----------~g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 354 LEE-DFTDQPWALGGFDKVLLDPPR----------AGAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred hHH-hhhhhhhhcCCCCEEEECcCC----------cChHHHHHHHHhcCCCeEEEEE
Confidence 110 010000101122566665443 2245777999999999998874
No 68
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=35.41 E-value=60 Score=33.17 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=38.0
Q ss_pred hcCCcchhhh-HhhhHHHH----hhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCC
Q 009215 251 QTTPYISFGF-MAANEAIR----QAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQN 317 (540)
Q Consensus 251 e~sP~~kfah-ftANqAIL----EA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~ 317 (540)
...|--++++ |..|+.|+ +.+.-...-+|+|+|.|.| .+...|+.+ ++ ++|||+.+..
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d~~ 75 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEIDRD 75 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECCHH
Confidence 3455555555 55555554 4443344568999999998 577777776 32 8999998753
No 69
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=35.38 E-value=4.2e+02 Score=28.22 Aligned_cols=127 Identities=13% Similarity=0.144 Sum_probs=69.0
Q ss_pred HHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc-eeEEEe
Q 009215 266 AIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN-LEFSMI 344 (540)
Q Consensus 266 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~-~eF~~v 344 (540)
.|..++. ....|||||.|.|..=..|+++|..+ + ...+-.+|+-+.+. ++. ..+.++.-..| +++..+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~--~~~~Y~plDIS~~~--L~~----a~~~L~~~~~p~l~v~~l 137 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-K--KSVDYYALDVSRSE--LQR----TLAELPLGNFSHVRCAGL 137 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-C--CCceEEEEECCHHH--HHH----HHHhhhhccCCCeEEEEE
Confidence 4555553 22379999999999999999999732 2 23566888876532 333 33333322233 555555
Q ss_pred eccCCCC--CCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHh--cCCcEEEEEeecCC
Q 009215 345 SEPVTPS--LLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKR--LNPTLLTVVEQDAN 408 (540)
Q Consensus 345 ~~~~~~~--~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~--L~PkvvvlvEqea~ 408 (540)
....+.. -+... .....-.++.-.--.+.++. +.....||+.+++ |+|.-..++--|..
T Consensus 138 ~gdy~~~l~~l~~~--~~~~~~r~~~flGSsiGNf~---~~ea~~fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 138 LGTYDDGLAWLKRP--ENRSRPTTILWLGSSIGNFS---RPEAAAFLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred EecHHHHHhhcccc--cccCCccEEEEeCccccCCC---HHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 3211100 01100 01111233333333444443 3457789999987 89977776655543
No 70
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=34.91 E-value=3.3e+02 Score=29.26 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=56.0
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCC-ceeEEEeeccCCCCCCccc
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI-NLEFSMISEPVTPSLLTRE 356 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl-~~eF~~v~~~~~~~~l~~~ 356 (540)
+|+|++.|.| .+--.||.+ + -+++||+.+... .+...+.++..++ +++| +...+. .+..
T Consensus 236 ~vLDL~cG~G----~~~l~la~~-~----~~v~~vE~~~~a------v~~a~~N~~~~~~~~~~~--~~~d~~--~~~~- 295 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAGP-D----TQLTGIEIESEA------IACAQQSAQMLGLDNLSF--AALDSA--KFAT- 295 (374)
T ss_pred EEEEccCCcc----HHHHHHhhc-C----CeEEEEECCHHH------HHHHHHHHHHcCCCcEEE--EECCHH--HHHH-
Confidence 6899999998 344445533 2 379999976432 2233344555566 3444 332111 0000
Q ss_pred ccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 009215 357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVE 404 (540)
Q Consensus 357 ~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvE 404 (540)
.+ ...-++|++|=+. .+.-+.++..|.+++|+-+|.++
T Consensus 296 ~~-~~~~D~vi~DPPr---------~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 296 AQ-MSAPELVLVNPPR---------RGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred hc-CCCCCEEEECCCC---------CCCcHHHHHHHHhcCCCeEEEEE
Confidence 01 1123678887442 24456888999999998888775
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=34.77 E-value=2.2e+02 Score=28.23 Aligned_cols=33 Identities=6% Similarity=-0.095 Sum_probs=23.8
Q ss_pred eeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCC
Q 009215 276 SLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQN 317 (540)
Q Consensus 276 ~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~ 317 (540)
.-.|+|.|.|.| .=+..||.+ -..+|||+.+..
T Consensus 38 ~~rvL~~gCG~G----~da~~LA~~-----G~~V~avD~s~~ 70 (218)
T PRK13255 38 GSRVLVPLCGKS----LDMLWLAEQ-----GHEVLGVELSEL 70 (218)
T ss_pred CCeEEEeCCCCh----HhHHHHHhC-----CCeEEEEccCHH
Confidence 347899999998 344556764 358999998753
No 72
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=34.53 E-value=48 Score=34.39 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=21.9
Q ss_pred cCCCeeEEEEccCCCCCchHHHHHHHhc
Q 009215 272 QGKDSLHIIDLGMERTLQWPSLIRSLAS 299 (540)
Q Consensus 272 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~ 299 (540)
.|.+.+||||||-+.+.+ -.+|.+++.
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 589999999999877777 456777776
No 73
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=33.90 E-value=1.1e+02 Score=31.19 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=49.6
Q ss_pred CCCchHHH-HHHHHHHHHHHHHHHhhcCCCccc-cccchHHHHHHHhcCCCeeecCCc-HHHHHHHHhcc
Q 009215 437 PRNSPLRM-NIERLHFAEEIRNIVAYEGSDRIE-RHERAHQWRRQLGRAGFQLVGLKS-LSQARMMLSVY 503 (540)
Q Consensus 437 p~~s~eR~-~iE~~~lg~eI~NiVAcEG~~RvE-RhE~~~~Wr~rm~rAGF~~vpls~-~~qA~~ll~~~ 503 (540)
+-..++|. ++|. -.++|.|+|+..+.++.- +|-+-.+=..-|..|||..-|+.+ .+|+...++..
T Consensus 86 QlTaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~ae~Qv~evlK~l 153 (234)
T COG1500 86 QLTAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKSAEEQVQEVLKAL 153 (234)
T ss_pred eccHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCCHHHHHHHHHHHH
Confidence 33444554 5665 589999999998876654 466667788899999999999999 77888877654
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=33.77 E-value=4e+02 Score=24.90 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=54.9
Q ss_pred EEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcccc
Q 009215 278 HIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTREN 357 (540)
Q Consensus 278 HIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~ 357 (540)
.|+|+|.|.|. +...++.+ ++ ++|||+.+... .+...+.++..++.++| +..... ..
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~------~~~a~~~~~~~~~~~~~--~~~d~~--~~---- 78 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFA------VKELRENAKLNNVGLDV--VMTDLF--KG---- 78 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHH------HHHHHHHHHHcCCceEE--EEcccc--cc----
Confidence 49999999993 55566654 33 89999976432 22233334445555443 321111 00
Q ss_pred cCccCCceEEEEeccccccccccc----------------cchHHHHHHHH-HhcCCcEEEEEeecCCC
Q 009215 358 LDLREGEALFVNSIMHLHKYVKES----------------RGSLKAILQAI-KRLNPTLLTVVEQDANH 409 (540)
Q Consensus 358 L~i~~~EaLaVN~~~~LH~L~~es----------------~~~r~~~L~~I-r~L~PkvvvlvEqea~h 409 (540)
+ ...-+.|+.|..+ |+..+.. ....+.+|+.+ +-|+|.-.+++......
T Consensus 79 ~-~~~fD~Vi~n~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 79 V-RGKFDVILFNPPY--LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred c-CCcccEEEECCCC--CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 0 1123566666554 3332210 01245666655 78899776655444443
No 75
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=32.04 E-value=2.2e+02 Score=27.21 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=50.2
Q ss_pred CCCeeEEEEccCCCCCchHHHHHH--HhcCCCCCCeEEEeEecCCC--ChhHHHHhHHHHHHHHHhcCCceeEEEe
Q 009215 273 GKDSLHIIDLGMERTLQWPSLIRS--LASRPEGPPRIRITCLISNQ--NLSELKASMKPVLHDATSLGINLEFSMI 344 (540)
Q Consensus 273 g~~~VHIIDfgI~~G~QWpsLiqa--LA~Rp~GPP~LRITgI~~~~--~~~~~~~~~~~L~~~a~~fgl~~eF~~v 344 (540)
|...|+|.|==|...-|--.||+= |+.++. ++..+|.-|..+. ...+-...++++.+-+.+.||.|.+.+-
T Consensus 18 ~~~~I~ieDPYir~~hQi~Nl~~F~El~vk~~-~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~gI~~~~~f~ 92 (148)
T cd02685 18 GVTEITVEDPYIRNFHQIRNFLRFCELVVKPP-CELKYIHLVTGEDEDNGKQQIEALEEIKQSLASHGVEFTWEFS 92 (148)
T ss_pred CceEEEEeCccccchHHHHHHHHHHHHHhcCc-cceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 788999999999999999988875 333422 2345555554443 3334456677888888899998888884
No 76
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=32.01 E-value=3.5e+02 Score=28.19 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=56.5
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc-eeEEEeeccCCCCCCcc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN-LEFSMISEPVTPSLLTR 355 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~-~eF~~v~~~~~~~~l~~ 355 (540)
-+|+|++.|.|. +--.||.+ + -+++||+.+... .+...+.++..+++ ++|.... +. .+..
T Consensus 175 ~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~a------v~~A~~n~~~~~l~~v~~~~~D--~~--~~~~ 235 (315)
T PRK03522 175 RSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAEA------IACAKQSAAELGLTNVQFQALD--ST--QFAT 235 (315)
T ss_pred CEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHHH------HHHHHHHHHHcCCCceEEEEcC--HH--HHHH
Confidence 579999999994 44455653 2 379999986432 33344455666663 5553322 11 1110
Q ss_pred cccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEEe
Q 009215 356 ENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVVE 404 (540)
Q Consensus 356 ~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~PkvvvlvE 404 (540)
. . ...-++|++|=+ . .+.-+.++..+.+++|+-++.+.
T Consensus 236 ~-~-~~~~D~Vv~dPP--------r-~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 236 A-Q-GEVPDLVLVNPP--------R-RGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred h-c-CCCCeEEEECCC--------C-CCccHHHHHHHHHcCCCeEEEEE
Confidence 0 0 112367777733 1 23345777889999999888764
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=31.80 E-value=4e+02 Score=25.76 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=55.0
Q ss_pred HHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEee
Q 009215 266 AIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMIS 345 (540)
Q Consensus 266 AILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~ 345 (540)
.++++++-...-+|+|+|.|.|..=..|.+.+ . +.-++++|+.+... .+...+.++..++.-..+++.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-----~~g~V~~iD~~~~~------~~~a~~~l~~~~~~~~v~~~~ 130 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-----RRGKVYTVEIVKEL------AIYAAQNIERLGYWGVVEVYH 130 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-----CCCEEEEEeCCHHH------HHHHHHHHHHcCCCCcEEEEE
Confidence 35566654444579999999986443333333 1 12279999986432 122334455566431233332
Q ss_pred ccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHHHhcCCcEEEEE
Q 009215 346 EPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAIKRLNPTLLTVV 403 (540)
Q Consensus 346 ~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~Ir~L~Pkvvvlv 403 (540)
.... ..+. ...+-+++++++.. ++++. . ..+.|+|.-.+++
T Consensus 131 ~d~~-~~~~----~~~~fD~Ii~~~~~--~~~~~-------~---l~~~L~~gG~lvi 171 (205)
T PRK13944 131 GDGK-RGLE----KHAPFDAIIVTAAA--STIPS-------A---LVRQLKDGGVLVI 171 (205)
T ss_pred CCcc-cCCc----cCCCccEEEEccCc--chhhH-------H---HHHhcCcCcEEEE
Confidence 1111 0011 12345677777654 44432 2 3466788554433
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=30.77 E-value=5.8e+02 Score=26.20 Aligned_cols=121 Identities=10% Similarity=0.118 Sum_probs=60.7
Q ss_pred cCCcchhh--hHhhhHHHHhhhc--CCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHH
Q 009215 252 TTPYISFG--FMAANEAIRQAAQ--GKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKP 327 (540)
Q Consensus 252 ~sP~~kfa--hftANqAILEA~~--g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~ 327 (540)
+-|-.-|+ +..+.+..+++++ ....-.|+|+|.|.|. |-.+++.+ |+ -+++||+.+... .+.
T Consensus 132 ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~--g~--~~V~avDid~~a------l~~ 197 (288)
T TIGR00406 132 LDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL--GA--AKVVGIDIDPLA------VES 197 (288)
T ss_pred ECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc--CC--CeEEEEECCHHH------HHH
Confidence 34555443 4445555566554 2233579999999984 43445543 22 289999986432 222
Q ss_pred HHHHHHhcCCceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEE
Q 009215 328 VLHDATSLGINLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQA-IKRLNPTLLTVV 403 (540)
Q Consensus 328 L~~~a~~fgl~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~-Ir~L~Pkvvvlv 403 (540)
..+.++..++...+........ . ..-.+=+.|+.|... ..+..++.. .+.|+|.-.++.
T Consensus 198 a~~n~~~n~~~~~~~~~~~~~~----~---~~~~~fDlVvan~~~----------~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 198 ARKNAELNQVSDRLQVKLIYLE----Q---PIEGKADVIVANILA----------EVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred HHHHHHHcCCCcceEEEecccc----c---ccCCCceEEEEecCH----------HHHHHHHHHHHHHcCCCcEEEE
Confidence 2333444454433333321110 0 000122556555431 234455554 488899866654
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=30.63 E-value=4.4e+02 Score=25.63 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=42.2
Q ss_pred eeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCcc
Q 009215 276 SLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTR 355 (540)
Q Consensus 276 ~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~ 355 (540)
..+|+|+|.|.| .+...++.+. |..++|||+.+... .+...+.++..+++ ..+++..... +
T Consensus 88 ~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~~~~------~~~a~~~~~~~~~~-~~~~~~~d~~----~- 148 (251)
T TIGR03534 88 PLRVLDLGTGSG----AIALALAKER---PDARVTAVDISPEA------LAVARKNAARLGLD-NVTFLQSDWF----E- 148 (251)
T ss_pred CCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECCHHH------HHHHHHHHHHcCCC-eEEEEECchh----c-
Confidence 458999999999 3444444432 45689999976432 23334445555654 2333332111 1
Q ss_pred cccCccCCceEEEEeccc
Q 009215 356 ENLDLREGEALFVNSIMH 373 (540)
Q Consensus 356 ~~L~i~~~EaLaVN~~~~ 373 (540)
.+.-..-+.|+.|-++.
T Consensus 149 -~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred -cCcCCceeEEEECCCCC
Confidence 11112346777777664
No 80
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=30.11 E-value=1.3e+02 Score=31.93 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=41.0
Q ss_pred HHHhhhcCCC---eeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEE
Q 009215 266 AIRQAAQGKD---SLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFS 342 (540)
Q Consensus 266 AILEA~~g~~---~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~ 342 (540)
+++|++...+ .-||.|+|.|.|.-=-+++..| |.-|+|||+.+... ..-.++-++++++.=.|.
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~~~~v~AiD~S~~A------i~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------PQCTVTAIDVSKAA------IKLAKENAQRLKLSGRIE 202 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------CCceEEEEeccHHH------HHHHHHHHHHHhhcCceE
Confidence 3455554433 3489999999998777777666 46799999987532 222344455555333344
Q ss_pred Ee
Q 009215 343 MI 344 (540)
Q Consensus 343 ~v 344 (540)
.+
T Consensus 203 v~ 204 (328)
T KOG2904|consen 203 VI 204 (328)
T ss_pred EE
Confidence 43
No 81
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=28.98 E-value=4.8e+02 Score=24.36 Aligned_cols=118 Identities=16% Similarity=0.210 Sum_probs=63.5
Q ss_pred hhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEE
Q 009215 263 ANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFS 342 (540)
Q Consensus 263 ANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~ 342 (540)
+-..+++.+.....=+|+|+|.|.|. +=-.|+.+ -|..++|+++.+... .+-..+-++..++.- .+
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~---~~~~~v~~vDi~~~a------~~~a~~n~~~n~~~~-v~ 84 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKR---GPDAKVTAVDINPDA------LELAKRNAERNGLEN-VE 84 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHT---STCEEEEEEESBHHH------HHHHHHHHHHTTCTT-EE
T ss_pred HHHHHHHHHhhccCCeEEEecCChHH----HHHHHHHh---CCCCEEEEEcCCHHH------HHHHHHHHHhcCccc-cc
Confidence 44566677765566679999999993 22234443 367889999876432 233344455556553 44
Q ss_pred EeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHH-HHHhcCCcEEEE
Q 009215 343 MISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQ-AIKRLNPTLLTV 402 (540)
Q Consensus 343 ~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~-~Ir~L~Pkvvvl 402 (540)
++....- +.+.-.+=+.|+.|=++ |.-.++.....+.|++ .-+-|+|.-...
T Consensus 85 ~~~~d~~------~~~~~~~fD~Iv~NPP~--~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 85 VVQSDLF------EALPDGKFDLIVSNPPF--HAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp EEESSTT------TTCCTTCEEEEEE---S--BTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccccc------ccccccceeEEEEccch--hcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 4442211 11111233677888773 3222211223555554 458899988663
No 82
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=28.90 E-value=1.1e+02 Score=29.68 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=45.2
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHhhhcc
Q 009215 163 LVHLLLACA-EAVGCRDTKLAVSMLSQIWASATPWGDSLQRVSYCFALGLKSRLSL 217 (540)
Q Consensus 163 Lv~LLl~CA-eAV~~gd~~~A~~lL~~L~~~aSp~Gd~~QRlA~yFaeAL~~Rl~~ 217 (540)
+..+|+-|. -++..++...|..++..|..+..|..+-..|+...|.+|+..=..|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 455666555 7788899999999999999998887788899999999999755443
No 83
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=28.80 E-value=97 Score=28.94 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=30.6
Q ss_pred HHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 265 EAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 265 qAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
+.|++.+.-...=+|+|+|.|.| .|...|+.| + -++|+|+.+.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G----~lt~~l~~~-~----~~v~~vE~~~ 45 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKG----ALTEELLER-A----ARVTAIEIDP 45 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCcc----HHHHHHHhc-C----CeEEEEECCH
Confidence 34666665333448999999998 566777776 2 3899999875
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=26.96 E-value=5.4e+02 Score=24.22 Aligned_cols=97 Identities=21% Similarity=0.333 Sum_probs=51.5
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRE 356 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~ 356 (540)
-.|+|+|.|.| .+-..++.+ + |..++|+|+.+... .+.+.+.++.++++ .++++..... ..+.
T Consensus 33 ~~vLDiG~G~G----~~~~~la~~--~-~~~~v~~vD~s~~~------~~~a~~n~~~~~~~-~i~~~~~d~~-~~~~-- 95 (187)
T PRK08287 33 KHLIDVGAGTG----SVSIEAALQ--F-PSLQVTAIERNPDA------LRLIKENRQRFGCG-NIDIIPGEAP-IELP-- 95 (187)
T ss_pred CEEEEECCcCC----HHHHHHHHH--C-CCCEEEEEECCHHH------HHHHHHHHHHhCCC-CeEEEecCch-hhcC--
Confidence 36999999998 333444443 2 45799999986532 22333445555553 2334332111 0110
Q ss_pred ccCccCCceEEEEeccccccccccccchHHHHHHH-HHhcCCcEEEEEe
Q 009215 357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQA-IKRLNPTLLTVVE 404 (540)
Q Consensus 357 ~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~-Ir~L~PkvvvlvE 404 (540)
..-++++++... + ..+.+++. .+.|+|.-.+++.
T Consensus 96 ----~~~D~v~~~~~~--~--------~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 96 ----GKADAIFIGGSG--G--------NLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred ----cCCCEEEECCCc--c--------CHHHHHHHHHHhcCCCeEEEEE
Confidence 122455544321 1 23445554 5889999887763
No 85
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=24.65 E-value=2.3e+02 Score=28.68 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCcchhhhHhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 239 REEKMEAFQLVYQTTPYISFGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 239 ~~~~~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
..+++.|.+.|.+..=|-.+... .++.|.+.+. ...-+|+|+|.|.|.--..|.+.+... ....++||+.+.
T Consensus 51 ~~~~~~ar~~fl~~g~y~~l~~~-i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~ 122 (272)
T PRK11088 51 NKEMMQARRAFLDAGHYQPLRDA-VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISK 122 (272)
T ss_pred CHHHHHHHHHHHHCCChHHHHHH-HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCH
Confidence 34677777777665333222222 2223333332 344579999999995433333333211 125789999864
No 86
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.05 E-value=74 Score=32.84 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=18.3
Q ss_pred cCCCeeEEEEccCCCCCchHHHHHHHhcC
Q 009215 272 QGKDSLHIIDLGMERTLQWPSLIRSLASR 300 (540)
Q Consensus 272 ~g~~~VHIIDfgI~~G~QWpsLiqaLA~R 300 (540)
.|.+.|||||+ +.+ +. .+|+.++.-
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~ 74 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHA 74 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHh
Confidence 48999999999 555 66 466666554
No 87
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=23.36 E-value=6.9e+02 Score=24.21 Aligned_cols=97 Identities=15% Similarity=0.223 Sum_probs=54.3
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCceeEEEeeccCCCCCCccc
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGINLEFSMISEPVTPSLLTRE 356 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~~eF~~v~~~~~~~~l~~~ 356 (540)
-.|+|+|.|.|. .++ .++.+. |..++|||+.+... .+..-+.++..+++- ++++..... ++..
T Consensus 47 ~~VLDiGcGtG~--~al--~la~~~---~~~~V~giD~s~~~------l~~A~~~~~~~~l~~-i~~~~~d~~--~~~~- 109 (187)
T PRK00107 47 ERVLDVGSGAGF--PGI--PLAIAR---PELKVTLVDSLGKK------IAFLREVAAELGLKN-VTVVHGRAE--EFGQ- 109 (187)
T ss_pred CeEEEEcCCCCH--HHH--HHHHHC---CCCeEEEEeCcHHH------HHHHHHHHHHcCCCC-EEEEeccHh--hCCC-
Confidence 468999999993 222 222221 45699999986532 223345566666641 344432211 1111
Q ss_pred ccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 009215 357 NLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVE 404 (540)
Q Consensus 357 ~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvE 404 (540)
-.+-+.|+.|+. ...+.+++.+ +.|+|.-.+++.
T Consensus 110 ---~~~fDlV~~~~~-----------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 ---EEKFDVVTSRAV-----------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ---CCCccEEEEccc-----------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 123456666542 2356677764 889999888775
No 88
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=22.99 E-value=2.4e+02 Score=31.78 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=44.8
Q ss_pred ccccccccccchHHHHHHHHHhcCCcEEE----EEe----ecCCCCCCchhHHHHHHHHHHHHHHHhhhh
Q 009215 373 HLHKYVKESRGSLKAILQAIKRLNPTLLT----VVE----QDANHNGPFFLGRFLESLHYYSAIFDSLEA 434 (540)
Q Consensus 373 ~LH~L~~es~~~r~~~L~~Ir~L~Pkvvv----lvE----qea~hnsp~F~~RF~EAL~yYsAlFDSLea 434 (540)
+.|++..+.-..|-..|+.+|+.+|++=+ ++- ..+++..|..-..+...+..|+.+.|-.+.
T Consensus 78 R~~~~~~~~~~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~ 147 (497)
T PF13552_consen 78 RIHHLSLEEALERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEG 147 (497)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhh
Confidence 55666544334567788889999999544 221 134556688999999999999999988883
No 89
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=22.80 E-value=5.6e+02 Score=25.27 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=23.0
Q ss_pred eEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCC
Q 009215 277 LHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQN 317 (540)
Q Consensus 277 VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~ 317 (540)
-.|+|+|.|.| .=...||.| -..+|||+.+..
T Consensus 36 ~rvLd~GCG~G----~da~~LA~~-----G~~V~gvD~S~~ 67 (213)
T TIGR03840 36 ARVFVPLCGKS----LDLAWLAEQ-----GHRVLGVELSEI 67 (213)
T ss_pred CeEEEeCCCch----hHHHHHHhC-----CCeEEEEeCCHH
Confidence 48999999998 234455654 258999998753
No 90
>PRK07402 precorrin-6B methylase; Provisional
Probab=22.55 E-value=4.4e+02 Score=25.05 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=60.6
Q ss_pred hhhHhhhHHHHhhhcCCCeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCC
Q 009215 258 FGFMAANEAIRQAAQGKDSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGI 337 (540)
Q Consensus 258 fahftANqAILEA~~g~~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl 337 (540)
...-...+.+++.+.-...=.|+|+|.|.|. +-..++.+. |.-++|+|+.+... .+.+.+.++++++
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~----~~~~la~~~---~~~~V~~vD~s~~~------~~~a~~n~~~~~~ 89 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGT----IPVEAGLLC---PKGRVIAIERDEEV------VNLIRRNCDRFGV 89 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCH----HHHHHHHHC---CCCEEEEEeCCHHH------HHHHHHHHHHhCC
Confidence 3344455566676653444479999999995 223333221 23589999986432 3334455566665
Q ss_pred ceeEEEeeccCCCCCCcccccCccCCceEEEEeccccccccccccchHHHHHHHH-HhcCCcEEEEEe
Q 009215 338 NLEFSMISEPVTPSLLTRENLDLREGEALFVNSIMHLHKYVKESRGSLKAILQAI-KRLNPTLLTVVE 404 (540)
Q Consensus 338 ~~eF~~v~~~~~~~~l~~~~L~i~~~EaLaVN~~~~LH~L~~es~~~r~~~L~~I-r~L~PkvvvlvE 404 (540)
+ .++++...+.. .+ ..+. ...+.+.+.. ..+.+.+|+.+ +.|+|.-.+++.
T Consensus 90 ~-~v~~~~~d~~~-~~--~~~~-~~~d~v~~~~-----------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 90 K-NVEVIEGSAPE-CL--AQLA-PAPDRVCIEG-----------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred C-CeEEEECchHH-HH--hhCC-CCCCEEEEEC-----------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 3 23444321110 01 0111 1112333211 12455666665 688999776664
No 91
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=22.36 E-value=48 Score=35.98 Aligned_cols=14 Identities=43% Similarity=0.876 Sum_probs=11.3
Q ss_pred cCCCeeEEEEccCC
Q 009215 272 QGKDSLHIIDLGME 285 (540)
Q Consensus 272 ~g~~~VHIIDfgI~ 285 (540)
..+..|||||||+.
T Consensus 163 k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 163 KDANVIHIIDFGMA 176 (449)
T ss_pred CCCceEEEEeccch
Confidence 34668999999985
No 92
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=21.76 E-value=54 Score=27.08 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.0
Q ss_pred cchHHHHHHHhcCCCeeecCC
Q 009215 471 ERAHQWRRQLGRAGFQLVGLK 491 (540)
Q Consensus 471 E~~~~Wr~rm~rAGF~~vpls 491 (540)
++..+-|.+|+.+|++|+.+.
T Consensus 3 ~RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 3 ERVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHHcCCCcceee
Confidence 445566899999999999874
No 93
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=20.72 E-value=9.3e+02 Score=24.75 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=31.7
Q ss_pred eeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCCChhHHHHhHHHHHHHHHhcCCc
Q 009215 276 SLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQNLSELKASMKPVLHDATSLGIN 338 (540)
Q Consensus 276 ~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~~~~~~~~~~~~L~~~a~~fgl~ 338 (540)
..+|+|+|.|.|. +.-.|+.+. |..++|||+.+... .+...+.++..++.
T Consensus 122 ~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis~~a------l~~A~~n~~~~~~~ 171 (284)
T TIGR03533 122 VKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDISPDA------LAVAEINIERHGLE 171 (284)
T ss_pred CCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECCHHH------HHHHHHHHHHcCCC
Confidence 3589999999994 444555442 45699999986432 22334445566654
No 94
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=20.54 E-value=4.4e+02 Score=28.28 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=23.3
Q ss_pred CeeEEEEccCCCCCchHHHHHHHhcCCCCCCeEEEeEecCCC
Q 009215 275 DSLHIIDLGMERTLQWPSLIRSLASRPEGPPRIRITCLISNQ 316 (540)
Q Consensus 275 ~~VHIIDfgI~~G~QWpsLiqaLA~Rp~GPP~LRITgI~~~~ 316 (540)
...+|+|+|.|.|.-. ..|+.+-+ ..++|+|+.+.
T Consensus 113 ~~~~VLDLGcGtG~~~----l~La~~~~---~~~VtgVD~S~ 147 (340)
T PLN02490 113 RNLKVVDVGGGTGFTT----LGIVKHVD---AKNVTILDQSP 147 (340)
T ss_pred CCCEEEEEecCCcHHH----HHHHHHCC---CCEEEEEECCH
Confidence 3568999999999633 33443321 25899999754
Done!