Query 009216
Match_columns 540
No_of_seqs 155 out of 1508
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:50:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361 Chaperonin complex com 100.0 2E-112 5E-117 819.8 39.3 526 4-532 1-526 (543)
2 cd03340 TCP1_eta TCP-1 (CTT or 100.0 8E-109 2E-113 891.6 59.8 518 10-529 3-520 (522)
3 TIGR02345 chap_CCT_eta T-compl 100.0 6E-108 1E-112 882.8 58.0 518 7-529 2-520 (522)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 2E-107 4E-112 877.1 60.4 512 10-531 3-528 (531)
5 TIGR02339 thermosome_arch ther 100.0 3E-107 5E-112 879.1 58.3 507 11-527 4-518 (519)
6 PTZ00212 T-complex protein 1 s 100.0 7E-107 1E-111 876.0 60.8 518 6-531 5-528 (533)
7 TIGR02344 chap_CCT_gamma T-com 100.0 4E-107 8E-112 878.8 57.9 510 11-530 4-523 (525)
8 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1E-106 3E-111 871.5 61.1 511 12-530 2-515 (517)
9 cd03343 cpn60 cpn60 chaperonin 100.0 1E-106 3E-111 875.0 58.4 508 11-528 3-516 (517)
10 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2E-106 3E-111 873.4 56.8 514 7-527 5-526 (526)
11 TIGR02343 chap_CCT_epsi T-comp 100.0 4E-106 8E-111 869.3 57.7 515 7-528 9-531 (532)
12 cd03335 TCP1_alpha TCP-1 (CTT 100.0 7E-106 2E-110 868.5 58.4 504 18-530 3-527 (527)
13 TIGR02341 chap_CCT_beta T-comp 100.0 5E-105 1E-109 857.9 60.0 513 11-531 2-517 (519)
14 TIGR02342 chap_CCT_delta T-com 100.0 6E-105 1E-109 858.5 58.2 503 18-529 4-517 (517)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 2E-104 4E-109 856.9 58.0 503 17-528 2-515 (515)
16 TIGR02340 chap_CCT_alpha T-com 100.0 5E-104 1E-108 855.3 60.1 507 17-532 6-533 (536)
17 TIGR02346 chap_CCT_theta T-com 100.0 7E-104 2E-108 851.2 60.1 517 11-539 5-530 (531)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 7E-103 2E-107 835.4 55.3 478 13-529 2-483 (484)
19 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1E-100 2E-105 818.8 51.0 466 11-527 4-479 (480)
20 KOG0363 Chaperonin complex com 100.0 4E-101 8E-106 737.6 39.7 522 7-536 2-526 (527)
21 KOG0358 Chaperonin complex com 100.0 9E-101 2E-105 738.3 35.8 501 18-528 21-533 (534)
22 COG0459 GroL Chaperonin GroEL 100.0 2.3E-98 5E-103 794.9 50.2 504 15-532 3-517 (524)
23 cd03341 TCP1_theta TCP-1 (CTT 100.0 2E-97 4E-102 791.8 53.2 459 20-528 5-471 (472)
24 cd00309 chaperonin_type_I_II c 100.0 4.9E-97 1E-101 790.9 53.7 459 18-527 3-464 (464)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 3.2E-93 7E-98 768.9 52.0 483 35-530 1-485 (485)
26 PRK00013 groEL chaperonin GroE 100.0 1.2E-92 2.6E-97 761.4 52.6 470 17-537 4-532 (542)
27 PRK12849 groEL chaperonin GroE 100.0 3.9E-92 8.5E-97 757.4 53.9 461 18-531 5-525 (542)
28 PRK12851 groEL chaperonin GroE 100.0 1.5E-91 3.2E-96 753.7 52.9 468 17-536 5-531 (541)
29 PTZ00114 Heat shock protein 60 100.0 2.4E-91 5.1E-96 755.2 53.7 465 17-532 16-543 (555)
30 PRK12850 groEL chaperonin GroE 100.0 1.3E-90 2.8E-95 746.9 53.2 464 18-533 6-528 (544)
31 cd03344 GroEL GroEL_like type 100.0 2.3E-90 4.9E-95 742.1 52.5 457 18-527 3-519 (520)
32 PRK12852 groEL chaperonin GroE 100.0 3.5E-90 7.7E-95 745.4 52.2 467 17-535 5-531 (545)
33 TIGR02348 GroEL chaperonin Gro 100.0 4.8E-90 1E-94 741.1 51.7 460 18-530 4-523 (524)
34 KOG0364 Chaperonin complex com 100.0 9.9E-93 2.1E-97 694.2 26.4 518 5-532 1-524 (527)
35 KOG0360 Chaperonin complex com 100.0 1.2E-91 2.6E-96 692.9 30.5 510 17-534 13-541 (545)
36 CHL00093 groEL chaperonin GroE 100.0 3.5E-89 7.7E-94 735.1 49.7 461 18-530 5-526 (529)
37 KOG0362 Chaperonin complex com 100.0 3.7E-89 8E-94 679.9 45.2 524 1-539 1-531 (537)
38 PRK14104 chaperonin GroEL; Pro 100.0 3.2E-88 6.8E-93 727.8 51.6 469 17-537 5-533 (546)
39 PLN03167 Chaperonin-60 beta su 100.0 1.2E-87 2.7E-92 726.7 49.0 467 17-532 58-584 (600)
40 KOG0359 Chaperonin complex com 100.0 2.6E-83 5.5E-88 627.1 26.4 504 13-531 7-517 (520)
41 KOG0357 Chaperonin complex com 100.0 4.4E-68 9.6E-73 505.6 21.9 386 6-531 9-398 (400)
42 KOG0356 Mitochondrial chaperon 100.0 5.8E-61 1.2E-65 485.7 29.2 462 16-533 17-541 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 2E-39 4.3E-44 318.9 26.2 228 172-409 17-257 (261)
44 cd03333 chaperonin_like chaper 100.0 1.8E-36 3.8E-41 290.3 23.9 205 156-405 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.9 1.2E-22 2.5E-27 226.2 16.5 233 173-415 332-576 (1598)
46 COG1433 Uncharacterized conser 52.9 52 0.0011 28.4 6.5 49 279-328 56-104 (121)
47 cd00851 MTH1175 This uncharact 51.1 35 0.00076 27.8 5.2 39 279-318 54-92 (103)
48 PF02579 Nitro_FeMo-Co: Dinitr 48.4 48 0.001 26.5 5.5 38 279-317 44-81 (94)
49 cd00562 NifX_NifB This CD repr 44.5 65 0.0014 26.1 5.8 38 280-318 53-90 (102)
50 PF12846 AAA_10: AAA-like doma 35.1 1E+02 0.0022 30.2 6.6 57 276-332 241-302 (304)
51 TIGR00129 fdhD_narQ formate de 30.5 68 0.0015 31.2 4.2 43 278-320 182-224 (237)
52 PRK00724 formate dehydrogenase 28.6 74 0.0016 31.4 4.2 43 278-320 211-253 (263)
53 cd01143 YvrC Periplasmic bindi 25.9 1.9E+02 0.0041 26.3 6.3 51 281-331 53-110 (195)
54 cd00852 NifB NifB belongs to a 23.6 2.3E+02 0.005 23.3 5.8 31 287-318 64-94 (106)
55 TIGR02663 nifX nitrogen fixati 23.6 2.7E+02 0.0059 23.5 6.3 50 278-330 55-108 (119)
56 cd03465 URO-D_like The URO-D _ 23.1 5.8E+02 0.013 25.6 9.8 49 263-314 199-247 (330)
57 COG1526 FdhD Uncharacterized p 22.8 1.4E+02 0.0031 29.4 4.9 44 278-321 211-254 (266)
58 cd01144 BtuF Cobalamin binding 22.7 2.3E+02 0.0049 27.0 6.4 52 281-332 50-108 (245)
59 PRK13600 putative ribosomal pr 22.7 3.6E+02 0.0079 21.6 6.3 49 278-326 19-71 (84)
60 smart00574 POX domain associat 22.4 2.5E+02 0.0054 24.8 5.7 46 383-428 84-129 (140)
61 cd00853 NifX NifX belongs to a 22.0 2.6E+02 0.0057 22.8 5.8 31 287-318 60-90 (102)
62 PRK07714 hypothetical protein; 21.6 3.7E+02 0.0081 22.0 6.5 51 279-332 25-79 (100)
63 PF02634 FdhD-NarQ: FdhD/NarQ 21.5 1.1E+02 0.0023 29.7 3.7 42 278-319 182-223 (236)
64 KOG2663 Acetolactate synthase, 20.9 1E+02 0.0022 30.0 3.3 27 373-400 121-147 (309)
65 PRK07283 hypothetical protein; 20.9 3.5E+02 0.0076 22.2 6.2 50 279-331 25-78 (98)
66 PRK09534 btuF corrinoid ABC tr 20.7 2.3E+02 0.0049 29.3 6.2 52 281-332 112-170 (359)
67 PRK13601 putative L7Ae-like ri 20.2 4.1E+02 0.0088 21.1 6.1 51 279-332 15-69 (82)
68 KOG1481 Cysteine synthase [Ami 20.2 54 0.0012 32.5 1.3 55 356-412 47-101 (391)
69 PRK13602 putative ribosomal pr 20.1 4.1E+02 0.0089 21.0 6.2 52 278-332 17-72 (82)
No 1
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-112 Score=819.84 Aligned_cols=526 Identities=77% Similarity=1.151 Sum_probs=513.0
Q ss_pred cCchhHhhccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHH
Q 009216 4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (540)
Q Consensus 4 ~~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~ 83 (540)
||+||+.+|+++++.++|.-.+.+|+.||+++++.++|||||+|++|+|++..|+++|||||+||||-|++-||++|.|+
T Consensus 1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 009216 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (540)
Q Consensus 84 ~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~ 163 (540)
+.+++||.++||||||+|+|++++|+++-.+++.|+||..|+++|++|...|++.++++++.++..+..+-++.|++.|.
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~ 160 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA 160 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886665566889999999
Q ss_pred HhhccCcCCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEe
Q 009216 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (540)
Q Consensus 164 tsl~sk~~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~ 243 (540)
|+|+||++.+..++|+++++||+..+....+.+.|+|++++||.+.||.+++|+.|.+.|.+++|+.+|+++.||||+++
T Consensus 161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~L 240 (543)
T KOG0361|consen 161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 240 (543)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEE
Confidence 99999999999999999999999998743378999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHH
Q 009216 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (540)
Q Consensus 244 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le 323 (540)
|-.||.+.++.++++.+.++++++.+.+.||..+.++++++...|++||++.-.|+|.+.+||++++|+|-+|++.+||.
T Consensus 241 nvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~ 320 (543)
T KOG0361|consen 241 NVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN 320 (543)
T ss_pred eeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 009216 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (540)
Q Consensus 324 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l 403 (540)
|+..++|+.|.++..++.++.||+|..|++.++|.+||-+|+||+..+.||++|||+.++.++|.+|++|||++++|.++
T Consensus 321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrral 400 (543)
T KOG0361|consen 321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRAL 400 (543)
T ss_pred HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeee
Q 009216 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (540)
Q Consensus 404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~ 483 (540)
++..||+|||++||.++++|++++..+++++|+.+.+|++|||.||++||+|+|+|..+++.+||..|.+ |. .|+|+
T Consensus 401 kn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~--G~-~w~Gv 477 (543)
T KOG0361|consen 401 KNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQ--GE-KWYGV 477 (543)
T ss_pred ccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhc--CC-ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 88 99999
Q ss_pred ecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCC
Q 009216 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRS 532 (540)
Q Consensus 484 d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~ 532 (540)
|.+++.+.|+++..||||..||.++++.|+|+|++||.+|+-|...++.
T Consensus 478 di~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~ 526 (543)
T KOG0361|consen 478 DINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQ 526 (543)
T ss_pred eecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCccc
Confidence 9999999999999999999999999999999999999999999887654
No 2
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.5e-109 Score=891.56 Aligned_cols=518 Identities=76% Similarity=1.157 Sum_probs=496.7
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhc
Q 009216 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (540)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (540)
.+++++.++..|.+++.+|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 3 ILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccC
Q 009216 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (540)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk 169 (540)
++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++..+++++++.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK 162 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999876432234678999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeeccccc
Q 009216 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (540)
Q Consensus 170 ~~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~ 249 (540)
+.+.++++|++++++|+..++++.|.++|+|+++.|++++||++++|++|+++|.+|+|.+||++++||+|++++++|++
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~ 242 (522)
T cd03340 163 LIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELEL 242 (522)
T ss_pred cchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCC
Confidence 99999999999999999999764478899999999999999999999999999999998889999999999999999999
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHHh
Q 009216 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (540)
Q Consensus 250 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~t 329 (540)
.+++.+.++.++++.+++++.+.|+++++++++++.+.|+++|+++++|+|.+++||.++||++++++++++|+|||++|
T Consensus 243 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~t 322 (522)
T cd03340 243 KAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQAT 322 (522)
T ss_pred CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcee
Q 009216 330 GGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVV 409 (540)
Q Consensus 330 Ga~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vv 409 (540)
||++++++++++++++|+|+.|++.++|+++|++|+||+.++.+||+|||+++..++|.||+++||++++++++++|++|
T Consensus 323 Ga~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~~vv 402 (522)
T cd03340 323 GGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVV 402 (522)
T ss_pred CCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCc
Q 009216 410 AGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGG 489 (540)
Q Consensus 410 pGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~ 489 (540)
||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++..++|+|+.+|+
T Consensus 403 pGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~~~~Gid~~~g~ 480 (522)
T cd03340 403 AGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQ--GGGKWYGVDINNEG 480 (522)
T ss_pred ECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCCCeeeeeCCCCc
Confidence 9999999999999999988889999999999999999999999999999999999999999976 42147999999999
Q ss_pred ccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCC
Q 009216 490 IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (540)
Q Consensus 490 ~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~ 529 (540)
++||++.|||||+.||+++|+.|+|+|++||+||++|+.+
T Consensus 481 i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 481 IADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 9999999999999999999999999999999999999774
No 3
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.3e-108 Score=882.76 Aligned_cols=518 Identities=68% Similarity=1.067 Sum_probs=496.4
Q ss_pred hhHhhccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHH
Q 009216 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIA 86 (540)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~ 86 (540)
||+.+++++.++..|.+++.+|+.||.+++++|++||||+||+|||+++.| ++|||||+|||++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a 80 (522)
T TIGR02345 2 PTIVLLKEGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIA 80 (522)
T ss_pred CccchhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHH
Confidence 455677888889999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhh
Q 009216 87 KSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTL 166 (540)
Q Consensus 87 ~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl 166 (540)
++|++++||||||+|+|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++..+ ..+++.|.++++|++
T Consensus 81 ~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~va~tsl 159 (522)
T TIGR02345 81 KSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVK-GEQREVLEKCAATAL 159 (522)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcc-cccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999987421 112578999999999
Q ss_pred ccCcCCcchHHHHHHHHHHHhhcCCCC-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeec
Q 009216 167 SSKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (540)
Q Consensus 167 ~sk~~~~~~~~ls~li~~Ai~~~~~~~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~ 245 (540)
+||+.+.++++|++++++|+..++++. |.++|+|+++.|++++||++++|++|+++|.+|+|.+||++++||+|+++++
T Consensus 160 ~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 160 NSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred ccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 999999999999999999999998644 7889999999999999999999999999999999988999999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHH
Q 009216 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (540)
Q Consensus 246 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~i 325 (540)
+|++.+++.+..+.++++++++++.+.|+++++++++++.+.|+++|+|+++|++.+++||.++||+++++++++++++|
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 009216 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (540)
Q Consensus 326 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~ 405 (540)
+++|||++++++++++++++|+|+.|++.++++++|++|+||+++++|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~ 399 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKA 399 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeec
Q 009216 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (540)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~ 485 (540)
+++|||||++|++++++|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+
T Consensus 400 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~--~~-~~~G~d~ 476 (522)
T TIGR02345 400 RKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAK--GG-KWYGVDI 476 (522)
T ss_pred CCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CC-CccceeC
Confidence 88999999999999999999888889999999999999999999999999999999999999999876 55 7899999
Q ss_pred CCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCC
Q 009216 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (540)
Q Consensus 486 ~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~ 529 (540)
.+|+++||++.|||||+.||+++|+.|+|+|++||+||++|+.+
T Consensus 477 ~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 477 NTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 99999999999999999999999999999999999999999764
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-107 Score=877.12 Aligned_cols=512 Identities=29% Similarity=0.474 Sum_probs=489.0
Q ss_pred hhccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhc
Q 009216 10 ILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (540)
Q Consensus 10 ~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (540)
.+++++.++..|.+++.+|+.||.+|+++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 3 KLLNPKAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred ccccCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhccccc-CCChHHHHHHHHHHHHHhhcc
Q 009216 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIE-GQSLEEKKRLLSKCAATTLSS 168 (540)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~-~~~~~~~~~~l~~ia~tsl~s 168 (540)
++++||||||++||+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++++. ..+ ++.|.++++|+++|
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~s 158 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVD----RELLLNVARTSLRT 158 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC----HHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999997763 333 67899999999999
Q ss_pred CcCCcchHHHHHHHHHHHhhcCCCC---CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeec
Q 009216 169 KLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (540)
Q Consensus 169 k~~~~~~~~ls~li~~Ai~~~~~~~---d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~ 245 (540)
|+.++++++|++++++|+..++++. |.+.|+++++.|++.+||++++|++|++++.+|+| |++++||+|+++++
T Consensus 159 K~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~---~~~~~n~~Ill~~~ 235 (531)
T TIGR02347 159 KLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDM---PRRVKNAYILTCNV 235 (531)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCC---ceeccCceEEEEeC
Confidence 9999999999999999999997642 56778999999999999999999999999999874 88999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcC-------Ce---EEEecCcccHHHHHHHHhCCceeEe
Q 009216 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSG-------AK---VVLSRLAIGDLATQYFADRDIFCAG 315 (540)
Q Consensus 246 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~-------~~---lii~~~~i~~~a~~~l~~~~I~~i~ 315 (540)
+|++.+++.++.+.+++++++..+++.|+++++.++++|++.+ ++ ||+|+++|++.+++||.++||++++
T Consensus 236 ~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~ 315 (531)
T TIGR02347 236 SLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALR 315 (531)
T ss_pred CCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEc
Confidence 9999999999999999999999999999999999999999866 25 9999999999999999999999999
Q ss_pred cCChHHHHHHHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHH
Q 009216 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDA 395 (540)
Q Consensus 316 ~v~~~~le~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~da 395 (540)
++++++|+|||++|||++++++++++++++|+|+.|++..+++++|++|+||++++.|||+|||+|+.+++|++|+++||
T Consensus 316 rv~~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l~DA 395 (531)
T TIGR02347 316 RAKRRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAVRDG 395 (531)
T ss_pred cCCHHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCC
Q 009216 396 IMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPT 475 (540)
Q Consensus 396 l~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~ 475 (540)
++++++++++|++|||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|..
T Consensus 396 l~v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~-- 473 (531)
T TIGR02347 396 LRAVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDE-- 473 (531)
T ss_pred HHHHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--
Confidence 999999999999999999999999999999988889999999999999999999999999999999999999998876
Q ss_pred CCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 009216 476 GEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKR 531 (540)
Q Consensus 476 ~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~ 531 (540)
++ .++|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|+..|.
T Consensus 474 ~~-~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~~ 528 (531)
T TIGR02347 474 GG-EVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGRS 528 (531)
T ss_pred cC-CceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCccc
Confidence 55 78999999999999999999999999999999999999999999999987654
No 5
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=2.5e-107 Score=879.12 Aligned_cols=507 Identities=42% Similarity=0.679 Sum_probs=488.7
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcc
Q 009216 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (540)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (540)
+++++.+...|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd 83 (519)
T TIGR02339 4 ILKEGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 83 (519)
T ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 56777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 009216 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (540)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~ 170 (540)
+++||||||+++|+++|++++.+++++|+||+.|++||+.|++.+++.|+++++|++..+ ++.|.++|+|+++||+
T Consensus 84 ~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~----~~~L~~ia~tsl~sk~ 159 (519)
T TIGR02339 84 AEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPED----RDLLKKVAETSLTGKA 159 (519)
T ss_pred HHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCccc----HHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987654 6789999999999999
Q ss_pred C-CcchHHHHHHHHHHHhhcCC---C---C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEE
Q 009216 171 I-GGEKEFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (540)
Q Consensus 171 ~-~~~~~~ls~li~~Ai~~~~~---~---~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill 242 (540)
. +.+.++|++++++|+..+++ + . |.++|+|+++.|++++||++++|++|++++.+++ ||++++||+|++
T Consensus 160 ~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~---m~~~i~n~kIll 236 (519)
T TIGR02339 160 SAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPG---MPKRVKNAKIAL 236 (519)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCC---CccccCCCcEEE
Confidence 9 78999999999999999974 1 1 6788999999999999999999999999999875 689999999999
Q ss_pred eecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHH
Q 009216 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (540)
Q Consensus 243 ~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~l 322 (540)
++++||+.+++.++++.+++++++.++++.|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L 316 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDI 316 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 009216 323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (540)
Q Consensus 323 e~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (540)
+|||++|||++++++++++++.+|+|+.|++.++|+++|++|+||..+..|||+|||+|+.+++|.+|+++||+++++++
T Consensus 317 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 317 EKLARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred HHHHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCee
Q 009216 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYG 482 (540)
Q Consensus 403 l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G 482 (540)
+++|++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~--~~-~~~G 473 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEK--GN-KNAG 473 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--cC-Ccee
Confidence 99999999999999999999999888889999999999999999999999999999999999999998875 55 7899
Q ss_pred eecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 009216 483 VDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (540)
Q Consensus 483 ~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~ 527 (540)
+|+.+|+++||++.|||||+.+|+++|+.|+|+|++||+||++|+
T Consensus 474 id~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 474 INVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred EEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 999999999999999999999999999999999999999999985
No 6
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=6.7e-107 Score=876.01 Aligned_cols=518 Identities=37% Similarity=0.586 Sum_probs=493.3
Q ss_pred chhHhhccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCC-----CCCeEEecCHHHHhhhccccChHHH
Q 009216 6 QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD-----KGTVTISNDGATIMKLLDIVHPAAK 80 (540)
Q Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~-----~g~~~iTnDG~tIl~~l~~~hP~ak 80 (540)
..|..+++++.++..|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~ak 84 (533)
T PTZ00212 5 NVPPQVLKQGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAK 84 (533)
T ss_pred ccchHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHH
Confidence 44666789988999999999999999999999999999999999999998 5999999999999999999999999
Q ss_pred HHHHHHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHH
Q 009216 81 ILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSK 160 (540)
Q Consensus 81 ll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ 160 (540)
|+++++++|++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++|++..+ ..+++.|.+
T Consensus 85 ll~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~-~~~~~~l~~ 163 (533)
T PTZ00212 85 ILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDE-EKFKEDLLN 163 (533)
T ss_pred HHHHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccc-hhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999886532 123578999
Q ss_pred HHHHhhccCcCCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceE
Q 009216 161 CAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKI 240 (540)
Q Consensus 161 ia~tsl~sk~~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~I 240 (540)
+|+|+++||+.+.+.+.|++++++|+..+....+.+.|++++++|++++||++++|+++++++.+ .||++++||+|
T Consensus 164 va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~----~~~~~i~n~kI 239 (533)
T PTZ00212 164 IARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV----GQPKRLENCKI 239 (533)
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCC----CCCccccCCcE
Confidence 99999999999999999999999999988654478899999999999999999999999999765 35899999999
Q ss_pred EEeecccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCCh
Q 009216 241 LLLNIELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (540)
Q Consensus 241 ll~~~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~ 319 (540)
++++++||+++++. ++++.+++++++..+.+.|+++++++++.|++.++++++++++|++.+++||.++||++++++++
T Consensus 240 ll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~ 319 (533)
T PTZ00212 240 LVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADF 319 (533)
T ss_pred EEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCH
Confidence 99999999999987 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHH
Q 009216 320 EDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIV 399 (540)
Q Consensus 320 ~~le~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~ 399 (540)
++++|||++|||+++++++++++.++|+|+.|++..+|+++|++|+||..++.|||+|||+|+.+++|.||+++|||+++
T Consensus 320 ~~l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv 399 (533)
T PTZ00212 320 DGMERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVL 399 (533)
T ss_pred HHHHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCC
Q 009216 400 RRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGA 479 (540)
Q Consensus 400 ~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~ 479 (540)
++++++|++|||||++|++++.+|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+ ++ .
T Consensus 400 ~~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~--~~-~ 476 (533)
T PTZ00212 400 SQTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYK--GN-K 476 (533)
T ss_pred HHHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cC-C
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999976 65 7
Q ss_pred CeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 009216 480 PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKR 531 (540)
Q Consensus 480 ~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~ 531 (540)
++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|...|.
T Consensus 477 ~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 528 (533)
T PTZ00212 477 TAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAPR 528 (533)
T ss_pred ccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCCc
Confidence 8999999999999999999999999999999999999999999999988643
No 7
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-107 Score=878.84 Aligned_cols=510 Identities=32% Similarity=0.592 Sum_probs=488.8
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcc
Q 009216 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (540)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (540)
+++++.+...|.+++.+|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~ 83 (525)
T TIGR02344 4 VLNQNTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (525)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhh
Confidence 46777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 009216 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (540)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~ 170 (540)
+++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|+++++|++..+ ++.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sk~ 159 (525)
T TIGR02344 84 EEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVND----DAAMLKLIQSCIGTKF 159 (525)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987655 5789999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCCC-------CCc-cceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEE
Q 009216 171 IGGEKEFFASMVVDAVGAIGDGD-------RLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (540)
Q Consensus 171 ~~~~~~~ls~li~~Ai~~~~~~~-------d~~-~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill 242 (540)
.++|.++|++++++|+..++++. |.+ +|+|++++||+++||++++|++|++++.++ +||++++||+|++
T Consensus 160 ~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~---~m~~~~~n~kIll 236 (525)
T TIGR02344 160 VSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHP---KMRRYIENPRIVL 236 (525)
T ss_pred chhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCC---CCccccCCCCEEE
Confidence 99999999999999999997531 222 489999999999999999999999998876 4689999999999
Q ss_pred eecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHH
Q 009216 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (540)
Q Consensus 243 ~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~l 322 (540)
++++|++.+++.++++.++++++++++++.|++++++++++|.+.+++||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~L 316 (525)
T TIGR02344 237 LDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDN 316 (525)
T ss_pred EecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCCCCccc-ceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 009216 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (540)
Q Consensus 323 e~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 401 (540)
+|||++|||++++++++++++++|+ |+.|+++++++++|++|+||++++.|||+|||+|+.+++|+||+++||++++++
T Consensus 317 erIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 317 NRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred HHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCC-CCCC
Q 009216 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTG-EGAP 480 (540)
Q Consensus 402 ~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~-~~~~ 480 (540)
+++++++|||||++|++|+.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. + + .+
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~-~~ 473 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQ--EGN-CT 473 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cCC-Ce
Confidence 999999999999999999999999888889999999999999999999999999999999999999999976 5 4 78
Q ss_pred eeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCC
Q 009216 481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (540)
Q Consensus 481 ~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~ 530 (540)
+|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|...|
T Consensus 474 ~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 474 WGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred EeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 99999999999999999999999999999999999999999999998765
No 8
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-106 Score=871.52 Aligned_cols=511 Identities=36% Similarity=0.575 Sum_probs=487.3
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCC--CCCeEEecCHHHHhhhccccChHHHHHHHHHhhc
Q 009216 12 LKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (540)
Q Consensus 12 ~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (540)
++++.+...|.+++..|+.||.+++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|+++++++|
T Consensus 2 ~~~~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 81 (517)
T cd03336 2 LKDGAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQ 81 (517)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccC
Q 009216 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSK 169 (540)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk 169 (540)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++..+ .++++.|.++++|+++||
T Consensus 82 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~l~~ia~t~lssk 160 (517)
T cd03336 82 DDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDE-EAFREDLLNIARTTLSSK 160 (517)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccccc-chhHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999885321 123578999999999999
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeeccccc
Q 009216 170 LIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (540)
Q Consensus 170 ~~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~ 249 (540)
+.+.++++|++++++|+..++...+.++|++++++|++++||++++|+++++++.++ ||++++||+|++++++|++
T Consensus 161 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~----~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 161 ILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVN----QPKRIENAKILIANTPMDT 236 (517)
T ss_pred ccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCCC----CCCeeccccEEEEecCCCc
Confidence 999999999999999999996533788999999999999999999999999987642 5899999999999999999
Q ss_pred ccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHH
Q 009216 250 KSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (540)
Q Consensus 250 ~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~ 328 (540)
++++. ++++.+++++++..+.+.|++++++++++|++.|+++++++++|++.+++||.++||++++++++++|+|||++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~ 316 (517)
T cd03336 237 DKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALV 316 (517)
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99987 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 009216 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (540)
Q Consensus 329 tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~v 408 (540)
|||+++++++++++.++|+|+.|++..+|+++|++|+||++++.|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 317 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~~v 396 (517)
T cd03336 317 TGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDTRV 396 (517)
T ss_pred hCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCC
Q 009216 409 VAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTG 488 (540)
Q Consensus 409 vpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~ 488 (540)
|||||++|++++++|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+|
T Consensus 397 vpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~g 473 (517)
T cd03336 397 VLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYN--GN-TTAGLDMRKG 473 (517)
T ss_pred EeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC-CceeeecCCC
Confidence 99999999999999999988889999999999999999999999999999999999999999976 66 7899999999
Q ss_pred cccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCC
Q 009216 489 GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (540)
Q Consensus 489 ~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~ 530 (540)
+++||++.|||||+.||+++|+.|+|+|++||+||++|...|
T Consensus 474 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 474 TVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 999999999999999999999999999999999999999865
No 9
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-106 Score=874.95 Aligned_cols=508 Identities=41% Similarity=0.672 Sum_probs=489.5
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcc
Q 009216 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (540)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (540)
+++++.+..+|.+++..|+.||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 82 (517)
T cd03343 3 ILKEGTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQD 82 (517)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHH
Confidence 46777788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 009216 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (540)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~ 170 (540)
+++||||||+++|+++|++++.+++++|+||..|++||++|++.+++.|++++++++..+ ++.+.++++|+++||+
T Consensus 83 ~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~----~~~l~~va~ts~~sk~ 158 (517)
T cd03343 83 EEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDD----KDTLRKIAKTSLTGKG 158 (517)
T ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999999999987544 6789999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCC-----C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEee
Q 009216 171 IGGEKEFFASMVVDAVGAIGDG-----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (540)
Q Consensus 171 ~~~~~~~ls~li~~Ai~~~~~~-----~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~ 244 (540)
.+.+.++|++++++|+..++++ . |.++|+|++++|++++||++++|++|+++|.+++| ++.++||+|++++
T Consensus 159 ~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m---~~~~~n~~Illl~ 235 (517)
T cd03343 159 AEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGM---PKRVENAKIALLD 235 (517)
T ss_pred hhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCC---ccccCCCcEEEEe
Confidence 9999999999999999998653 2 67789999999999999999999999999999874 7899999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHH
Q 009216 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (540)
Q Consensus 245 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ 324 (540)
++||+.+++.++++.+++.+++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 236 ~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~ 315 (517)
T cd03343 236 APLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEK 315 (517)
T ss_pred ccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHh
Q 009216 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATK 404 (540)
Q Consensus 325 ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~ 404 (540)
||++|||++++++++++++++|+|+.|++.++|+++|++|+||.+++.|||+|||+|+.+++|++|+++||+++++++++
T Consensus 316 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 316 LARATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred HHHHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeee
Q 009216 405 NSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (540)
Q Consensus 405 ~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d 484 (540)
+|++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~G~d 472 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEK--GN-KNAGLD 472 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cC-Cceeee
Confidence 999999999999999999999888889999999999999999999999999999999999999998875 55 789999
Q ss_pred cCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 009216 485 INTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (540)
Q Consensus 485 ~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~ 528 (540)
+.+|++.||++.|||||+.+|+++|+.|+|+|++||+||++|+.
T Consensus 473 ~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 473 VYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred cCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 99999999999999999999999999999999999999999964
No 10
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.6e-106 Score=873.43 Aligned_cols=514 Identities=31% Similarity=0.533 Sum_probs=486.9
Q ss_pred hhHhhcccc--ccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHH
Q 009216 7 PQIILLKEG--TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (540)
Q Consensus 7 ~~~~~~~~~--~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~ 84 (540)
+|+.+++++ .+.++|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~ 84 (526)
T cd03339 5 RPFIIVREQEKKKRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVE 84 (526)
T ss_pred CCeEEecCCCccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHH
Confidence 344556776 368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 009216 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (540)
Q Consensus 85 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~t 164 (540)
++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++.+. .+.+.|.++++|
T Consensus 85 ~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~t 162 (526)
T cd03339 85 LSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSP--DNKEPLIQTAMT 162 (526)
T ss_pred HHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCc--ccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999886421 126789999999
Q ss_pred hhccCcCCcchHHHHHHHHHHHhhcCCC---C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceE
Q 009216 165 TLSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKI 240 (540)
Q Consensus 165 sl~sk~~~~~~~~ls~li~~Ai~~~~~~---~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~I 240 (540)
++++|+.+.+.++|++++++|+..+... + |.+.|+|+++.||+++||++++|++|++++.+++| |+.++||||
T Consensus 163 sl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m---~~~~~n~kI 239 (526)
T cd03339 163 SLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQM---PKEVKDAKI 239 (526)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCC---CceecCCCE
Confidence 9999998888999999999999988642 2 67899999999999999999999999999999874 789999999
Q ss_pred EEeecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChH
Q 009216 241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (540)
Q Consensus 241 ll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~ 320 (540)
++++++||+.+++.+.++.++++++++++.+.|+++++++++++++.|++||+++++|++.+++||.++||+++++++++
T Consensus 240 ~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~ 319 (526)
T cd03339 240 AILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGV 319 (526)
T ss_pred EEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeecccccCCCCCCcccceeEEEEEECC--eeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 009216 321 DLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (540)
Q Consensus 321 ~le~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~ 398 (540)
+|+|||++|||+++++++++++..+|+|+.|++..+|. ++|++|+||++++.|||+|||+|+.+++|+||+++||+++
T Consensus 320 ~LerIa~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~ 399 (526)
T cd03339 320 EIELIAIATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCV 399 (526)
T ss_pred HHHHHHHHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985 6899999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCC
Q 009216 399 VRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG 478 (540)
Q Consensus 399 ~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~ 478 (540)
+++++++|++|||||++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.++ ++
T Consensus 400 ~~~~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~-~~- 477 (526)
T cd03339 400 VRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKE-KN- 477 (526)
T ss_pred HHHHhhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CC-
Confidence 9999999999999999999999999998888889999999999999999999999999999999999999999651 23
Q ss_pred CCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 009216 479 APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (540)
Q Consensus 479 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~ 527 (540)
.++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++|||||++|.
T Consensus 478 ~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 478 PHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 6899999999999999999999999999999999999999999999873
No 11
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-106 Score=869.35 Aligned_cols=515 Identities=32% Similarity=0.543 Sum_probs=488.4
Q ss_pred hhHhhccc--cccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHH
Q 009216 7 PQIILLKE--GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (540)
Q Consensus 7 ~~~~~~~~--~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~ 84 (540)
+|..++++ +.+++.|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~ 88 (532)
T TIGR02343 9 RPFIIIKDQDKKKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVE 88 (532)
T ss_pred CCchhhccccccccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHH
Confidence 35556777 4678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 009216 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (540)
Q Consensus 85 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~t 164 (540)
++++|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++++.+. .+++.|.++++|
T Consensus 89 ~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~--~~~~~l~~ia~t 166 (532)
T TIGR02343 89 LSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDN--NNKEPLIQAAKT 166 (532)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCC--CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875321 126789999999
Q ss_pred hhccCcCCcchHHHHHHHHHHHhhcCCC---C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceE
Q 009216 165 TLSSKLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKI 240 (540)
Q Consensus 165 sl~sk~~~~~~~~ls~li~~Ai~~~~~~---~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~I 240 (540)
++++|+.+.+.++|++++++|+..+... + |.++|+|+++.||+++||++++|++|++++.+++ ||+.++||||
T Consensus 167 ~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~---m~~~~~n~kI 243 (532)
T TIGR02343 167 SLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQ---MPKEVKDAKI 243 (532)
T ss_pred hhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCC---CCeeecCCcE
Confidence 9999998888999999999999988542 2 7899999999999999999999999999999987 4889999999
Q ss_pred EEeecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChH
Q 009216 241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (540)
Q Consensus 241 ll~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~ 320 (540)
++++++||+.+++.+.++.+++++++.++.+.|+++++++++++++.|++||+++++|++.+++||.++||+++++++++
T Consensus 244 ~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~ 323 (532)
T TIGR02343 244 AILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGH 323 (532)
T ss_pred EEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHH
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeecccccCCCCCCcccceeEEEEEECC--eeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 009216 321 DLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN--ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (540)
Q Consensus 321 ~le~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~--~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~ 398 (540)
+|+|||++|||++++++++++++.+|+|+.|++..+|+ ++|++|+||++++.+||+|||+|+.+++|.||+++||+++
T Consensus 324 ~l~~Ia~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~ 403 (532)
T TIGR02343 324 ELELIAIATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCV 403 (532)
T ss_pred HHHHHHHHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 4899999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCC
Q 009216 399 VRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG 478 (540)
Q Consensus 399 ~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~ 478 (540)
++++++++++|||||++|++++++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. +.+
T Consensus 404 v~~~i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~ 481 (532)
T TIGR02343 404 VRNLIKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMK--EKN 481 (532)
T ss_pred HHHHHhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--cCC
Confidence 999999999999999999999999999988889999999999999999999999999999999999999998875 322
Q ss_pred CCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 009216 479 APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (540)
Q Consensus 479 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~ 528 (540)
.++|+|+.+|+++||++.|||||+.||+++|+.|+|+|++||+||++|..
T Consensus 482 ~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 482 PHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred CccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 78999999999999999999999999999999999999999999999954
No 12
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.2e-106 Score=868.53 Aligned_cols=504 Identities=39% Similarity=0.629 Sum_probs=479.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCCh
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGt 97 (540)
+..|.+++..|+.||.++++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||||
T Consensus 3 ~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 3 RTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHHHHHHHHhhccCcCCcchH
Q 009216 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (540)
Q Consensus 98 tt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~-~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (540)
||++||+++||+++.+|+++|+||+.|++||+.|++.+++.|++ +++|++..+ ++.|.++++|+++||+.+.+.+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLG----KESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccC----HHHHHHHHHHHhcccccchhHH
Confidence 99999999999999999999999999999999999999999996 899987544 5789999999999999988889
Q ss_pred HHHHHHHHHHhhcCC--C----C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeeccccc
Q 009216 177 FFASMVVDAVGAIGD--G----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (540)
Q Consensus 177 ~ls~li~~Ai~~~~~--~----~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~ 249 (540)
+|++++++|+..++. . . |.++|+|+++.|+++++|++++|++|++++.++. ||++++||+|++++++|++
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~---m~~~i~n~kIlll~~~Le~ 235 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQG---MPTRVKNAKIACLDFNLQK 235 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCC---CcccccCCcEEEEeccCCC
Confidence 999999999999852 1 1 6788999999999999999999999999999874 6899999999999999999
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHHh
Q 009216 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329 (540)
Q Consensus 250 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~t 329 (540)
.+++.++++.++++.+++.+.+.|++++++++++|.+.|++||+++++|++.+++||.++||++++++++++|+|||++|
T Consensus 236 ~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~t 315 (527)
T cd03335 236 TKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKAT 315 (527)
T ss_pred CccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccccCC------CCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 009216 330 GGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (540)
Q Consensus 330 Ga~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l 403 (540)
||+++++++++ ++.++|+|+.|+++++++++|++|.||++++.|||+|||+|+.+++|++|+++||++++++++
T Consensus 316 Ga~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~ 395 (527)
T cd03335 316 GATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEMERSLHDALCVVKRTL 395 (527)
T ss_pred CCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998655 344799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCC------
Q 009216 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE------ 477 (540)
Q Consensus 404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~------ 477 (540)
++|++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+ +.
T Consensus 396 ~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~--~~~~~~~~ 473 (527)
T cd03335 396 ESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAA--AQVKPDKK 473 (527)
T ss_pred hCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh--cCCccccc
Confidence 9999999999999999999999988889999999999999999999999999999999999999999876 41
Q ss_pred -CCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCC
Q 009216 478 -GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530 (540)
Q Consensus 478 -~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~ 530 (540)
++++|+|+.+|+++||++.|||||+.+|.++|+.|+|+|++|||||++|...|
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 26799999999999999999999999999999999999999999999997754
No 13
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.1e-105 Score=857.93 Aligned_cols=513 Identities=35% Similarity=0.563 Sum_probs=487.0
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCC--CCeEEecCHHHHhhhccccChHHHHHHHHHhh
Q 009216 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDK--GTVTISNDGATIMKLLDIVHPAAKILVDIAKS 88 (540)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~--g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~ 88 (540)
+++++.+..+|.+++.+|+.||.+++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++
T Consensus 2 ~~~~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 2 IFKDNAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4567778889999999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred cccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhcc
Q 009216 89 QDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSS 168 (540)
Q Consensus 89 ~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~s 168 (540)
|++++||||||+|||+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++... ..+++.|.++++|++++
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~-~~~~~~L~~ia~t~l~s 160 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDK-TKFRDDLLNIARTTLSS 160 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcc-cccHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999886421 01257899999999999
Q ss_pred CcCCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccc
Q 009216 169 KLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 169 k~~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le 248 (540)
|+.+.+.+.|++++++|+..+....+.+.|++.++.|+++++|++++|+++++.+.+ .||++++||+|++++++|+
T Consensus 161 ki~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~----~~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 161 KILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV----NQPKRIENAKILIANTPMD 236 (519)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCC----CCceeeccccEEEEecCCC
Confidence 999999999999999999998543366779999999999999999999999999764 3588999999999999999
Q ss_pred cccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHH
Q 009216 249 LKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (540)
Q Consensus 249 ~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~ 327 (540)
+.+++. ++++.+++++++..+.+.|++++.++++.|++.|+++++++++|++.+++||.++||++++++++.+|+|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~ 316 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLAL 316 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999887 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 009216 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNST 407 (540)
Q Consensus 328 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~ 407 (540)
+|||++++++++++++++|+|+.|++..+|+++|++|+||+.++.|||+|||+|+.+++|.+|+++||++++++++++++
T Consensus 317 ~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~~ 396 (519)
T TIGR02341 317 VTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVLSQTVKESR 396 (519)
T ss_pred HhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCC
Q 009216 408 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINT 487 (540)
Q Consensus 408 vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~ 487 (540)
+|||||++|++++++|++++++.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+
T Consensus 397 vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~ 473 (519)
T TIGR02341 397 TVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYN--GN-HTMGLDMEE 473 (519)
T ss_pred EEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--CC-CccceecCC
Confidence 999999999999999999888889999999999999999999999999999999999999999976 65 789999999
Q ss_pred CcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 009216 488 GGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKR 531 (540)
Q Consensus 488 ~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~ 531 (540)
|++.||++.|||||+.||+++|+.|+|+|++||+||++|...|+
T Consensus 474 g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~ 517 (519)
T TIGR02341 474 GEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAPR 517 (519)
T ss_pred CcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998773
No 14
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.3e-105 Score=858.51 Aligned_cols=503 Identities=34% Similarity=0.565 Sum_probs=481.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCCh
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGt 97 (540)
...+.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++||||
T Consensus 4 ~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGT 83 (517)
T TIGR02342 4 KDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGT 83 (517)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCcchHH
Q 009216 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (540)
Q Consensus 98 tt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (540)
||+++|+++||+++.+|+++|+||+.|++||+.|++.+++.|+++++|++..+ ++.|.++++|++++|+.+.+.++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~~~ 159 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD----REILIKSATTSLSSKVVSQYSSL 159 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccC----HHHHHHHHHHHhccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999987544 57899999999999999999999
Q ss_pred HHHHHHHHHhhcCCC----C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccccccc
Q 009216 178 FASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (540)
Q Consensus 178 ls~li~~Ai~~~~~~----~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~~~~ 252 (540)
|++++++|+..+++. . |.+.|+|+++.|++++||++++|++|++++.++. +||+.++||+|++++++|++.++
T Consensus 160 ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~--~mpk~i~n~kI~ll~~~Le~~~~ 237 (517)
T TIGR02342 160 LAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSA--GGPTRIEKAKIGLIQFQISPPKT 237 (517)
T ss_pred HHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccC--CCCccccCCcEEEEecCCCCCcc
Confidence 999999999999752 2 6889999999999999999999999999998742 47899999999999999999999
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcc-----cHHHHHHHHhCCceeEecCChHHHHHHHH
Q 009216 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (540)
Q Consensus 253 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i-----~~~a~~~l~~~~I~~i~~v~~~~le~ia~ 327 (540)
+...++.++++++++++++.|+++++++++++++.|++||+|+++| ++++++||.++||++++++++++|+|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~ 317 (517)
T TIGR02342 238 DMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICK 317 (517)
T ss_pred cccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred HhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCC-ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCC
Q 009216 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG-RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNS 406 (540)
Q Consensus 328 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~-~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g 406 (540)
+|||+++++++++++.++|+|+.|++.++++++|++|.+++++ +.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 318 ~tGa~ii~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~ 397 (517)
T TIGR02342 318 TIGCKPIASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKR 397 (517)
T ss_pred HHCCEEEcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999874 899999999999999999999999999999999999
Q ss_pred ceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecC
Q 009216 407 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN 486 (540)
Q Consensus 407 ~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~ 486 (540)
++|||||++|++++++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.
T Consensus 398 ~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~ 474 (517)
T TIGR02342 398 GLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHAN--GE-KYAGISVR 474 (517)
T ss_pred CEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CC-CccceecC
Confidence 9999999999999999999988889999999999999999999999999999999999999999976 66 78999999
Q ss_pred CCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCC
Q 009216 487 TGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (540)
Q Consensus 487 ~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~ 529 (540)
+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 475 ~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~~ 517 (517)
T TIGR02342 475 KGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFTR 517 (517)
T ss_pred CCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeecC
Confidence 9999999999999999999999999999999999999999753
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.8e-104 Score=856.88 Aligned_cols=503 Identities=35% Similarity=0.567 Sum_probs=482.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCC
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDG 96 (540)
++..+.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCcchH
Q 009216 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKE 176 (540)
Q Consensus 97 ttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~ 176 (540)
|||+++|+++|++++.+++++|+||..|++||+.|++.+++.|+++++|++..+ ++.|.++|+|+++||+.+.+++
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~----~~~l~~va~ts~~sK~~~~~~~ 157 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND----RESLIKSATTSLNSKVVSQYSS 157 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHHhccccchhhHH
Confidence 999999999999999999999999999999999999999999999999987544 5789999999999999999999
Q ss_pred HHHHHHHHHHhhcCCC----C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeeccccccc
Q 009216 177 FFASMVVDAVGAIGDG----D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKS 251 (540)
Q Consensus 177 ~ls~li~~Ai~~~~~~----~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~~~ 251 (540)
+|++++++|+.+++++ . |.++|.++++.|++++||++++|++|++++.++++ ||+.++||++++++|+|++.+
T Consensus 158 ~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~--~p~~i~n~ki~ll~~~le~~~ 235 (515)
T cd03338 158 LLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAG--GPTRIEKAKIGLIQFCLSPPK 235 (515)
T ss_pred HHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCC--CCccccCCcEEEEeccccccc
Confidence 9999999999999763 2 67889999999999999999999999999998763 488999999999999999999
Q ss_pred ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcc-----cHHHHHHHHhCCceeEecCChHHHHHHH
Q 009216 252 EKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVA 326 (540)
Q Consensus 252 ~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i-----~~~a~~~l~~~~I~~i~~v~~~~le~ia 326 (540)
++.+..+.++++++++++.++|+++++++++++++.|++||+++++| ++.+++||.++||++++++++++|+|||
T Consensus 236 ~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa 315 (515)
T cd03338 236 TDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFIC 315 (515)
T ss_pred cccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred HHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 009216 327 AATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (540)
Q Consensus 327 ~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~ 405 (540)
++|||+++++++++++.++|+|+.|++.++|+++|++|++|++ +..|||+|||+|+.+++|.+|+++||++++++++++
T Consensus 316 ~~tGa~ii~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 316 KTIGCKPVASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred HHHCCEEecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred CceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeec
Q 009216 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (540)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~ 485 (540)
|++|||||++|++|+++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~G~d~ 472 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQ--GE-KNAGINV 472 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cC-Cccceec
Confidence 99999999999999999999888888999999999999999999999999999999999999999976 55 7899999
Q ss_pred CCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 009216 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (540)
Q Consensus 486 ~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~ 528 (540)
.+|+++||++.|||||+.+|+++|+.|+|+|++||+||++|+.
T Consensus 473 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 473 RKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 9999999999999999999999999999999999999999863
No 16
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.6e-104 Score=855.30 Aligned_cols=507 Identities=37% Similarity=0.613 Sum_probs=481.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCC
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDG 96 (540)
++..|.+++..|+.||..|++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++|||
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhh-cccccCCChHHHHHHHHHHHHHhhccCcCCcch
Q 009216 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKEL-AKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (540)
Q Consensus 97 ttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~-s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (540)
|||++||+++||+++.+++++|+||+.|++||+.|++.+++.|++. ++|++..+ .+.|.++++|+++||+.+.++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~----~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELG----REALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999999999999999999999999999974 88887544 578999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC---C---C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccc
Q 009216 176 EFFASMVVDAVGAIGD---G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 176 ~~ls~li~~Ai~~~~~---~---~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le 248 (540)
++|++++++|+..++. + . |.++|+++++.|++++||++++|++|+++|.++. ||++++||+|++++++|+
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~---m~~~~~n~kIli~~~~L~ 238 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQ---MPKRIKKAKIACLDFNLQ 238 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCC---CcceecCCcEEEEecCCC
Confidence 9999999999999852 1 1 6788999999999999999999999999998874 689999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHH
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~ 328 (540)
+.+++.++++.++++.+++.+.+.|++++.+.+++|.+.+++||+++++|++.+++||.++||++++++++++|+|||++
T Consensus 239 ~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~ 318 (536)
T TIGR02340 239 KQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKA 318 (536)
T ss_pred CCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCC------CCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 009216 329 TGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (540)
Q Consensus 329 tGa~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (540)
|||++++++.++ ++.++|+|+.|+++++++++|++|+|++++++|||+|||+|+.+++|++|+++||+++++++
T Consensus 319 tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~ 398 (536)
T TIGR02340 319 TGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKRT 398 (536)
T ss_pred hCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997654 44569999999999999999999999988899999999999999999999999999999999
Q ss_pred HhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCC-----
Q 009216 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE----- 477 (540)
Q Consensus 403 l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~----- 477 (540)
+++|++|||||++|++++++|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+ ++
T Consensus 399 ~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~~~~~ 476 (536)
T TIGR02340 399 LESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAA--AQLKPEK 476 (536)
T ss_pred hcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cCccccc
Confidence 99999999999999999999999888888999999999999999999999999999999999999998876 31
Q ss_pred --CCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCC
Q 009216 478 --GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRS 532 (540)
Q Consensus 478 --~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~ 532 (540)
+.++|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|++
T Consensus 477 ~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~ 533 (536)
T TIGR02340 477 KHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQ 533 (536)
T ss_pred ccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Confidence 1579999999999999999999999999999999999999999999999887644
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.2e-104 Score=851.20 Aligned_cols=517 Identities=27% Similarity=0.507 Sum_probs=487.4
Q ss_pred hccccccccchhH-HHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhc
Q 009216 11 LLKEGTDTSQGKA-QLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQ 89 (540)
Q Consensus 11 ~~~~~~~~~~g~~-~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~ 89 (540)
+++++.++..|.+ ++.+|+.||..|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sq 84 (531)
T TIGR02346 5 LLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQ 84 (531)
T ss_pred cccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHH
Confidence 4566656667754 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcc-cccCCChHHHHHHHHHHHHHhhcc
Q 009216 90 DSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAK-SIEGQSLEEKKRLLSKCAATTLSS 168 (540)
Q Consensus 90 ~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~-~i~~~~~~~~~~~l~~ia~tsl~s 168 (540)
++++||||||+|||+++||+++.+++++|+||+.|++||+.|++.+++.|+++++ +++..+ +.+.+.++++|+++|
T Consensus 85 d~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~tsl~s 161 (531)
T TIGR02346 85 ENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVR---NKKELIKALKASISS 161 (531)
T ss_pred hhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCC---CHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999986 764322 257899999999999
Q ss_pred CcCCcchHHHHHHHHHHHhhcCCC---C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEee
Q 009216 169 KLIGGEKEFFASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (540)
Q Consensus 169 k~~~~~~~~ls~li~~Ai~~~~~~---~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~ 244 (540)
|+.+. +++|++++++|+..++++ . |.+.|+|+++.|++++||++++|++|++++. .+|+.++||||++++
T Consensus 162 K~~~~-~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~-----~~~k~i~n~kI~l~~ 235 (531)
T TIGR02346 162 KQYGN-EDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE-----GSVKRVKNAKVAVFS 235 (531)
T ss_pred ccCch-HHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC-----CCceeccCCCEEEEe
Confidence 99877 999999999999999753 2 6788999999999999999999999999853 257899999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHH
Q 009216 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (540)
Q Consensus 245 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ 324 (540)
+|+++.+++.+.++.++++.++.++.+.|+++++++++++++.|++||+++++|+|.+++||.++||+++++++..+|+|
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~ 315 (531)
T TIGR02346 236 CPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRR 315 (531)
T ss_pred cCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCC-CCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 009216 325 VAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP-SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (540)
Q Consensus 325 ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~-~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l 403 (540)
||.+|||++++++++++++++|+|+.|++.++|+++|.+|+++. .+..+||+|||+|+.+++|++|+++||++++++++
T Consensus 316 Ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai 395 (531)
T TIGR02346 316 LCKTVGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALV 395 (531)
T ss_pred HHHHHCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987 58899999999999999999999999999999999
Q ss_pred hCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeee
Q 009216 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (540)
Q Consensus 404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~ 483 (540)
++|++|||||++|++++.+|+++++..++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+
T Consensus 396 ~~~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~Gi 472 (531)
T TIGR02346 396 KDNRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKK--GN-TSSGI 472 (531)
T ss_pred cCCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cC-Cccce
Confidence 9999999999999999999999888888999999999999999999999999999999999999999876 55 78999
Q ss_pred ecCCCc--ccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCCCCCcCC
Q 009216 484 DINTGG--IADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRSGIRERRA 539 (540)
Q Consensus 484 d~~~~~--~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~~~~~~~~ 539 (540)
|+.+|+ ++||++.|||||+.||+++|+.|+|+|++|||||++|...|....++|..
T Consensus 473 d~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~~~~~~~~~~ 530 (531)
T TIGR02346 473 DIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKPAGGPKPPQG 530 (531)
T ss_pred eeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCCCCCCCCCCC
Confidence 999999 59999999999999999999999999999999999999988777777654
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.1e-103 Score=835.39 Aligned_cols=478 Identities=29% Similarity=0.486 Sum_probs=455.6
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccc
Q 009216 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (540)
Q Consensus 13 ~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~ 92 (540)
+++.+...|.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 2 NPKAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccC-CChHHHHHHHHHHHHHhhccCcC
Q 009216 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEG-QSLEEKKRLLSKCAATTLSSKLI 171 (540)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~-~~~~~~~~~l~~ia~tsl~sk~~ 171 (540)
+||||||+++|+++|++++.+++++|+||+.|++||++|++.+++.|++++++++. .+ .+.+.++|++++++|+.
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~----~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTD----RELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999864 23 57899999999999999
Q ss_pred CcchHHHHHHHHHHHhhcCCCC---CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccc
Q 009216 172 GGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 172 ~~~~~~ls~li~~Ai~~~~~~~---d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le 248 (540)
+.+.++|++++++|+..++++. |.+.|+++++.||+++||++++|++|++++.+|+| |++++||+|++++++|+
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m---~~~~~n~~Ill~~~~le 234 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDM---PKRVENAYILTCNVSLE 234 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCC---CccccCceEEEEeCCCC
Confidence 9999999999999999998642 78889999999999999999999999999999875 89999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHH
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~ 328 (540)
+.+++.+.++.++ ||+|+++|+|.+++||.++||++++++++++|+|||++
T Consensus 235 ~~~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~ 285 (484)
T cd03342 235 YEKTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLA 285 (484)
T ss_pred CCccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHH
Confidence 9988766655432 99999999999999999999999999999999999999
Q ss_pred hCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCce
Q 009216 329 TGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTV 408 (540)
Q Consensus 329 tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~v 408 (540)
|||+++++++++++.++|+|+.|++..+|+++|++|+||+.++.|||+|||+|+.+++|.||+++||++++++++++|++
T Consensus 286 tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~ 365 (484)
T cd03342 286 CGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCV 365 (484)
T ss_pred hCCEEecccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCC
Q 009216 409 VAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTG 488 (540)
Q Consensus 409 vpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~ 488 (540)
|||||++|++++.+|++++...++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.+ ++ .++|+|+.+|
T Consensus 366 vpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~-~~~Gid~~~g 442 (484)
T cd03342 366 VPGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAE--GG-QVGGVDLDTG 442 (484)
T ss_pred EeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cC-CceeeeCCCC
Confidence 99999999999999999988889999999999999999999999999999999999999988876 65 7899999999
Q ss_pred cccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCC
Q 009216 489 GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 529 (540)
Q Consensus 489 ~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~ 529 (540)
+++||++.|||||+.+|+++|+.|+|+|++|||||++|+..
T Consensus 443 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 443 EPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred cccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 99999999999999999999999999999999999999764
No 19
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-100 Score=818.79 Aligned_cols=466 Identities=34% Similarity=0.633 Sum_probs=444.5
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcc
Q 009216 11 LLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQD 90 (540)
Q Consensus 11 ~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~ 90 (540)
+++++.++..|.+++.+|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~ 83 (480)
T cd03337 4 VLNQNTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 83 (480)
T ss_pred eccCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHH
Confidence 46777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 009216 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (540)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~ 170 (540)
+++||||||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|++++++++..+ ++.|.++++|+++||+
T Consensus 84 ~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~i~~t~l~sK~ 159 (480)
T cd03337 84 EEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVND----RAQMLKIIKSCIGTKF 159 (480)
T ss_pred HHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCC----HHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999999999999999999987655 6789999999999999
Q ss_pred CCcchHHHHHHHHHHHhhcCCCC-----CCc---cceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEE
Q 009216 171 IGGEKEFFASMVVDAVGAIGDGD-----RLN---MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 242 (540)
Q Consensus 171 ~~~~~~~ls~li~~Ai~~~~~~~-----d~~---~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill 242 (540)
.+.|.+.|++++++|+..++++. +.+ +|+|++++|++++||++++|++|++++.++ +||++++||+|++
T Consensus 160 ~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~---~m~~~~~n~kIll 236 (480)
T cd03337 160 VSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP---KMRRRIENPRIVL 236 (480)
T ss_pred chhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCC---CCCcEecCCCEEE
Confidence 99999999999999999997541 123 589999999999999999999999999886 4689999999999
Q ss_pred eecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHH
Q 009216 243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL 322 (540)
Q Consensus 243 ~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~l 322 (540)
++++|++ ||+++++|++.+++||.++||++++++++++|
T Consensus 237 l~~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L 275 (480)
T cd03337 237 LDCPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDN 275 (480)
T ss_pred EecCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHH
Confidence 9999865 99999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccccCCCCCCccc-ceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 009216 323 LRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (540)
Q Consensus 323 e~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 401 (540)
+|||++|||++++++++++++++|+ |+.+++.++++++|++|+||++++.|||+|||+|+.+++|.||+++||++++++
T Consensus 276 ~rIa~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~ 355 (480)
T cd03337 276 NRIARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARN 355 (480)
T ss_pred HHHHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 778888888999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCC-CCCC
Q 009216 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTG-EGAP 480 (540)
Q Consensus 402 ~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~-~~~~ 480 (540)
+++++++|||||++|++++++|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|+..|.. + + .+
T Consensus 356 ~~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~--~~~-~~ 432 (480)
T cd03337 356 IILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQ--GEN-ST 432 (480)
T ss_pred HhcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--cCC-Ce
Confidence 999999999999999999999999988889999999999999999999999999999999999999999976 5 4 78
Q ss_pred eeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 009216 481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (540)
Q Consensus 481 ~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~ 527 (540)
+|+|+.+|+++||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 433 ~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 433 WGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred ECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 99999999999999999999999999999999999999999999984
No 20
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-101 Score=737.59 Aligned_cols=522 Identities=37% Similarity=0.583 Sum_probs=500.6
Q ss_pred hhHhhccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCC--CCCeEEecCHHHHhhhccccChHHHHHHH
Q 009216 7 PQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDD--KGTVTISNDGATIMKLLDIVHPAAKILVD 84 (540)
Q Consensus 7 ~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~--~g~~~iTnDG~tIl~~l~~~hP~akll~~ 84 (540)
+|.++|+++.++++|+.++.+.|.++..+.++|||||||+||+||++.. .|.+.+||||+|||+++.+.+|+||+|++
T Consensus 2 ~p~~i~~~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~ 81 (527)
T KOG0363|consen 2 NPVQIFKDGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVD 81 (527)
T ss_pred ChhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheec
Confidence 6889999999999999999999999999999999999999999999964 46799999999999999999999999999
Q ss_pred HHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 009216 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (540)
Q Consensus 85 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~t 164 (540)
.++-||.++||||||++||+++||+++.+|+.+.+||+.|++||+.|...|++.|.+.++.- ..+...++++|.++++|
T Consensus 82 ~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dn-s~~~~kfr~DLl~iarT 160 (527)
T KOG0363|consen 82 ISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDN-SSDKEKFREDLLKIART 160 (527)
T ss_pred cccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888753 33556789999999999
Q ss_pred hhccCcCCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEee
Q 009216 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (540)
Q Consensus 165 sl~sk~~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~ 244 (540)
.|+||+.++..++|++|+++|+.++....+++.|.|++..||.+.||++-+|+++++.+.. ++|++++|++||+-|
T Consensus 161 TL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv----~qpkriena~iLIAN 236 (527)
T KOG0363|consen 161 TLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV----NQPKRIENAKILIAN 236 (527)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC----CCcccccccceEEec
Confidence 9999999999999999999999999766689999999999999999999999999998764 468999999999999
Q ss_pred cccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHH
Q 009216 245 IELELKSEKE-NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (540)
Q Consensus 245 ~~Le~~~~~~-~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le 323 (540)
.+.+..+.+. .+.|.+++...+.++...|++.++.++++|.++|+|+.++..=|.++..++|.+.||+++.....+-+|
T Consensus 237 T~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiE 316 (527)
T KOG0363|consen 237 TPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIE 316 (527)
T ss_pred CCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHH
Confidence 9999988877 788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHH
Q 009216 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT 403 (540)
Q Consensus 324 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l 403 (540)
|++.+||+.|++.|++++...+|+|+.+++.-+|++++++|+|+.....|||+|||+|++.+||.+|++|||||++....
T Consensus 317 RLalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVLaqtv 396 (527)
T KOG0363|consen 317 RLALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVLAQTV 396 (527)
T ss_pred HHhhcccceeeeccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeee
Q 009216 404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483 (540)
Q Consensus 404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~ 483 (540)
++.+++.||||.||..+.++.+++...++++..++++|++||..+|.+|+.|+|||+.+++++||+.|.. |. .++|+
T Consensus 397 ~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~--g~-~t~Gl 473 (527)
T KOG0363|consen 397 KESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYN--GR-TTMGL 473 (527)
T ss_pred ccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhc--CC-ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 88 89999
Q ss_pred ecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCCCCC
Q 009216 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRSGIRE 536 (540)
Q Consensus 484 d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~~~~~ 536 (540)
|+++|++.||.+.||+|++.+|.+.+.+|.|+|.||||+|.+|...|+.+.|.
T Consensus 474 d~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~~ 526 (527)
T KOG0363|consen 474 DVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERERD 526 (527)
T ss_pred ccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcccccC
Confidence 99999999999999999999999999999999999999999999998876653
No 21
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-101 Score=738.28 Aligned_cols=501 Identities=35% Similarity=0.571 Sum_probs=480.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCCh
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGt 97 (540)
.....+.|.+||+|++++++.++|||||+||||||+++.|+++|||||+|||+.|++-||+++||++++..||.++||||
T Consensus 21 ~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGT 100 (534)
T KOG0358|consen 21 KEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGT 100 (534)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCcchHH
Q 009216 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (540)
Q Consensus 98 tt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (540)
||+|+|+|+||+.+.+|+++|+||+.|...|+.|.+.++++|++++.|++..| ++.|.+-+.|+|+||+.++++..
T Consensus 101 TsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsd----re~Li~~atTsLnSKvvSq~s~l 176 (534)
T KOG0358|consen 101 TSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSD----RESLIKSATTSLNSKVVSQYSSL 176 (534)
T ss_pred eEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCc----HHHHHHHHHhHhhHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999887 78999999999999999999999
Q ss_pred HHHHHHHHHhhcCC-C---C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccccccc
Q 009216 178 FASMVVDAVGAIGD-G---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSE 252 (540)
Q Consensus 178 ls~li~~Ai~~~~~-~---~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~~~~ 252 (540)
++.+.++|+.++-. . + |+++|+|++..||.++|+++++|++|++..... ..|+++++++|-++.|.|.++++
T Consensus 177 lapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~---~gptriekAkIglIQF~iS~PKt 253 (534)
T KOG0358|consen 177 LAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKS---AGPTRIEKAKIGLIQFQISPPKT 253 (534)
T ss_pred cchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccC---CCcchhhhceeeEEEEEecCCCC
Confidence 99999999998764 2 3 899999999999999999999999999876533 25899999999999999999999
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcc-----cHHHHHHHHhCCceeEecCChHHHHHHHH
Q 009216 253 KENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI-----GDLATQYFADRDIFCAGRVAEEDLLRVAA 327 (540)
Q Consensus 253 ~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i-----~~~a~~~l~~~~I~~i~~v~~~~le~ia~ 327 (540)
++..++.++++.+++++++.|++|+.+++++|++.|+||++.|++| +|++++||++.+|+++.++.++++|.+++
T Consensus 254 dmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick 333 (534)
T KOG0358|consen 254 DMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICK 333 (534)
T ss_pred CcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHh
Confidence 9999999999999999999999999999999999999999999987 78999999999999999999999999999
Q ss_pred HhCCeecccccCCCCCCcccceeEEEEEE-CCeeEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 009216 328 ATGGTVQTSVNNVVDEVLGTCEHFEERQV-GNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (540)
Q Consensus 328 ~tGa~ii~~l~~l~~~~lG~~~~v~~~~i-g~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~ 405 (540)
.+|++++.+++.+++..+|+++.+++... |+.+++.+.|+.+ .+.+||++||++...++|.+|++|||||++|+.++.
T Consensus 334 ~l~c~Pia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~ 413 (534)
T KOG0358|consen 334 TLGCKPIADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKK 413 (534)
T ss_pred hcCCeecchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhc
Confidence 99999999999999999999999998744 5569999999877 789999999999999999999999999999999999
Q ss_pred CceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeec
Q 009216 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (540)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~ 485 (540)
..++||||+.|+.++..|.+++....+.+.|++++|++|||.||.||++|+|++|+.++.+||..|.+ |+ .+.||+.
T Consensus 414 r~li~GGGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haq--ge-~~aGInV 490 (534)
T KOG0358|consen 414 RALIAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQ--GE-KNAGINV 490 (534)
T ss_pred cceecCCCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhc--CC-cccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 88 9999999
Q ss_pred CCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 009216 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (540)
Q Consensus 486 ~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~ 528 (540)
+.|.+.||+++.|+.|+.|-.++++.|+|++.+||+||+++..
T Consensus 491 Rkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 491 RKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred ecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999999999999999999999999999864
No 22
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-98 Score=794.85 Aligned_cols=504 Identities=37% Similarity=0.577 Sum_probs=479.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccC
Q 009216 15 GTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVG 94 (540)
Q Consensus 15 ~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~G 94 (540)
+.++.+|.+++.+|+.|+..++++|++||||+||+|||+++.|+++|||||+|||++|+++||.|||++++|++|++++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCcc
Q 009216 95 DGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGE 174 (540)
Q Consensus 95 DGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 174 (540)
|||||++||+++||+++.+++++|+||+.|++||++|++.+.++|++++.+++..+ ... +++.|++++|..+++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~-----~~~-~~~~t~v~sk~~~~~ 156 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSE-----EEL-KIAITSVASKSANSD 156 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcch-----hhh-hhhhheeeeeeccCh
Confidence 99999999999999999999999999999999999999999999999999988764 222 899999999997766
Q ss_pred hHHHHHHHHHHHhhcCCCC-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCC-ccccCceEEEeecccccccc
Q 009216 175 KEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP-KKFLNPKILLLNIELELKSE 252 (540)
Q Consensus 175 ~~~ls~li~~Ai~~~~~~~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~-~~~~n~~Ill~~~~Le~~~~ 252 (540)
++|++++++|+.+++..+ |.+.|.+++..|+..+|+++++|++|++++.+||| || +.++||+|+++|++|++.++
T Consensus 157 -~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~--~~~~~~e~~~Ili~d~~l~~~k~ 233 (524)
T COG0459 157 -EEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYF--MPDKRLENPKILLLDKKLEIKKP 233 (524)
T ss_pred -HHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCC--CCccccccceEEEEccccccccc
Confidence 999999999999998754 67899999999999999999999999999988886 78 89999999999999999999
Q ss_pred cccceEEecCHHHHHHHHHHHH-HHHHHHHHHHHHcCCe-EEEecCcccHHHHHHHHhCCceeEecCChHHH-HHHHHHh
Q 009216 253 KENAEIRLSDPSQYQSIVDAEW-NIIYDKLDKCVQSGAK-VVLSRLAIGDLATQYFADRDIFCAGRVAEEDL-LRVAAAT 329 (540)
Q Consensus 253 ~~~~~v~i~~~~~l~~~~~~E~-~~l~~~v~~i~~~~~~-lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~l-e~ia~~t 329 (540)
+.+.++.++++.++..|.+.|+ +.+..++.++.+.+++ +++++++|+|.+++||.+.+|++++++.++++ ++|++++
T Consensus 234 ~l~~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ 313 (524)
T COG0459 234 ELPLEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLG 313 (524)
T ss_pred cCcceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHcc
Confidence 9999999999999999999998 9999999999999999 99999999999999999999999999999999 8999999
Q ss_pred CCeecccccCCCCCCccc--ceeEEEEEECCeeEEEEEcCCC--CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 009216 330 GGTVQTSVNNVVDEVLGT--CEHFEERQVGNERFNIFSGCPS--GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (540)
Q Consensus 330 Ga~ii~~l~~l~~~~lG~--~~~v~~~~ig~~~~~~~~g~~~--~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~ 405 (540)
||.+++.++++++..+|. |..+++.+++++++.+|+++.. ++.|||+|||+|+.+++|.||+++|||+++++++++
T Consensus 314 ga~~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~ 393 (524)
T COG0459 314 GAKIVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEE 393 (524)
T ss_pred CceEEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999999999985 789999999999999999999999999999999999
Q ss_pred CceeecCCcchHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeee
Q 009216 406 STVVAGGGAIDMEISKYLRQESRAIAG-KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVD 484 (540)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~-~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d 484 (540)
|++|||||++|++++..|++++...++ ++|+++++|++||+.||++|++|||+||.+++.+|+..|.. .++|+|
T Consensus 394 g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~-----~~~G~d 468 (524)
T COG0459 394 GKIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHAT-----TNYGID 468 (524)
T ss_pred CCeEeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccC-----Ccccee
Confidence 999999999999999999997545555 99999999999999999999999999999999999998742 569999
Q ss_pred cCCCcc-cccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCC
Q 009216 485 INTGGI-ADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRS 532 (540)
Q Consensus 485 ~~~~~~-~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~ 532 (540)
+.+|++ .||++.|||||+.||+++|++|+++|.+||++|++|...|.+
T Consensus 469 ~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~~ 517 (524)
T COG0459 469 AFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPEE 517 (524)
T ss_pred ccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 999999 779999999999999999999999999999999999998875
No 23
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2e-97 Score=791.82 Aligned_cols=459 Identities=31% Similarity=0.546 Sum_probs=434.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCChHH
Q 009216 20 QGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTT 99 (540)
Q Consensus 20 ~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt 99 (540)
.+.+++.+|+.||.+|++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhccc-ccCCChHHHHHHHHHHHHHhhccCcCCcchHHH
Q 009216 100 VVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKS-IEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFF 178 (540)
Q Consensus 100 ~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~-i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~l 178 (540)
+++|+++||+++.+++++|+||+.|++||+.|++.++++|++++++ ++..+ +.+.+.++++|+++||+.+ ++++|
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~---~~~~l~~i~~t~l~sk~~~-~~~~l 160 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLR---NKEEVSKALKTAIASKQYG-NEDFL 160 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCcc---CHHHHHHHHHHHhcccccc-hHHHH
Confidence 9999999999999999999999999999999999999999999876 43321 2678999999999999976 79999
Q ss_pred HHHHHHHHhhcCCC---C-CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccccccccc
Q 009216 179 ASMVVDAVGAIGDG---D-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKE 254 (540)
Q Consensus 179 s~li~~Ai~~~~~~---~-d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~~~~~~ 254 (540)
++++++|+..++++ . +.++|+|++++|++++||++++|++|++.+. +++++++||+|++++++|++
T Consensus 161 ~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~-----~~~~~~~n~~Ili~~~~Le~----- 230 (472)
T cd03341 161 SPLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE-----GSVKRVKKAKVAVFSCPFDI----- 230 (472)
T ss_pred HHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC-----CCceeccCCcEEEEeccccC-----
Confidence 99999999999864 2 6789999999999999999999999987653 24588999999999999865
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHHhCCeec
Q 009216 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (540)
Q Consensus 255 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~tGa~ii 334 (540)
|++||+++++|++.+++||+++||++++++++++|+|||++|||+++
T Consensus 231 ---------------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii 277 (472)
T cd03341 231 ---------------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPL 277 (472)
T ss_pred ---------------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcccceeEEEEEECCeeEEEEEcCCC-CceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 009216 335 TSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPS-GRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGG 413 (540)
Q Consensus 335 ~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG 413 (540)
+++++++++++|+|+.|++.++|+++|++|++|+. ++.|||+|||+|+.+++|+||+++||++++++++++|++|||||
T Consensus 278 ~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG 357 (472)
T cd03341 278 PRLGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAG 357 (472)
T ss_pred cccccCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcC
Confidence 99999999999999999999999999999999987 89999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCC--ccc
Q 009216 414 AIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTG--GIA 491 (540)
Q Consensus 414 ~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~--~~~ 491 (540)
++|++++++|++++...++++++++++|++||+.||++|++|||+|+.+++.+|+..|.. ++ .++|+|+.+| +++
T Consensus 358 ~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~--~~-~~~Gid~~~g~~~~~ 434 (472)
T cd03341 358 ATEIELAKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQK--GN-KSAGVDIESGDEGTK 434 (472)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--cC-CeeeeeccCCCCCcc
Confidence 999999999999888888999999999999999999999999999999999999998866 55 7899999999 999
Q ss_pred ccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcC
Q 009216 492 DSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 528 (540)
Q Consensus 492 d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~ 528 (540)
||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 435 d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 435 DAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred ChhhccceecHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999999999999864
No 24
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.9e-97 Score=790.89 Aligned_cols=459 Identities=45% Similarity=0.716 Sum_probs=441.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCCh
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGt 97 (540)
..+|.+++..|++||..+++++++||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCcchHH
Q 009216 98 TTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEF 177 (540)
Q Consensus 98 tt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 177 (540)
||+++|+++|++++.+++++|+||..|++||+.|++.+++.|++++++++..+ ++.+.++++|+++||+.+.|+++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~----~~~l~~ia~tsl~sK~~~~~~~~ 158 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVED----REELLKVATTSLNSKLVSGGDDF 158 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCC----HHHHHHHhHhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999865544 68999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCC---CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccccccccc
Q 009216 178 FASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKE 254 (540)
Q Consensus 178 ls~li~~Ai~~~~~~~---d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~~~~~~ 254 (540)
+++++++|+..+++++ +.++|+|+++.||++.||++++|++|++++.+++| +++++||+|++++++|++
T Consensus 159 l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m---~~~~~n~~Ili~~~~Le~----- 230 (464)
T cd00309 159 LGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYM---PKRLENAKILLLDCKLEY----- 230 (464)
T ss_pred HHHHHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCC---ceeecCceEEEEecCcce-----
Confidence 9999999999998742 57899999999999999999999999999999875 799999999999999875
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHHhCCeec
Q 009216 255 NAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQ 334 (540)
Q Consensus 255 ~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~tGa~ii 334 (540)
||+++++|++.++++|.++||++++++++++|+|||++|||+++
T Consensus 231 ------------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii 274 (464)
T cd00309 231 ------------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIV 274 (464)
T ss_pred ------------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCc
Q 009216 335 TSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGA 414 (540)
Q Consensus 335 ~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~ 414 (540)
++++++++.++|+|+.|++.++|+++|++|.+++.++.|||+|||+|+.+++|+||+++||+++++++++++++|||||+
T Consensus 275 ~~~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa 354 (464)
T cd00309 275 SRLEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGA 354 (464)
T ss_pred cccccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccc
Q 009216 415 IDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSF 494 (540)
Q Consensus 415 ~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~ 494 (540)
+|++++++|++++.+.++++++++++|++||+.||++|++|||+|+.+++.+|+..|.+ +. .++|+|..+|++.||+
T Consensus 355 ~E~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~--~~-~~~g~d~~~~~~~d~~ 431 (464)
T cd00309 355 AEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAE--GG-GNAGGDVETGEIVDMK 431 (464)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc--cC-CCeeEECCCCcEeehh
Confidence 99999999999988889999999999999999999999999999999999999998876 54 6899999999999999
Q ss_pred cCCcccchHHHHHHHHHHHHHHHHHhchhhhhc
Q 009216 495 ANFVWEPAVVKINAINAATEAACLILSVDETVK 527 (540)
Q Consensus 495 ~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~ 527 (540)
+.|||||+.||+++|+.|+|+|++||+||++|+
T Consensus 432 ~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 432 EAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred hccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999999999999999999999999984
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=3.2e-93 Score=768.94 Aligned_cols=483 Identities=42% Similarity=0.690 Sum_probs=460.5
Q ss_pred HHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHHHH
Q 009216 35 VADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPF 114 (540)
Q Consensus 35 l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~l 114 (540)
|+++|++||||+|++|||++..|+++|||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCcchHHHHHHHHHHHhhcCCCCC
Q 009216 115 IEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDR 194 (540)
Q Consensus 115 i~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ls~li~~Ai~~~~~~~d 194 (540)
+++|+||..|++||+.|++.+++.|++++++++..+ +.++++++|++++|+.+.|.++|++++++|+..+....|
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~-----~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~ 155 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDD-----ESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFD 155 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTS-----HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHH
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccccccc-----hhhhhhhcccccccccccchhhhhhhHHHHHHhhccccc
Confidence 999999999999999999999999999999987653 699999999999999999999999999999944432225
Q ss_pred CccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccccccccccceEEecCHHHHHHHHHHHH
Q 009216 195 LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEW 274 (540)
Q Consensus 195 ~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~ 274 (540)
.+.++++++.|++++||++++|++|++++.++ +||+++++|+|++++++|++.++ .++++.+++.++++.+.+.|+
T Consensus 156 ~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~---~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e~ 231 (485)
T PF00118_consen 156 LDNIKIIKIPGGSISDSELINGIVLDKGFSSP---NMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQEK 231 (485)
T ss_dssp GGGEEEEEEESSSSGGEEEESEEEESSSBSST---TSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHHH
T ss_pred ccchhhhhhccccccccccccceeeecccccc---ccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhhh
Confidence 67799999999999999999999999999987 46889999999999999999988 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHHhCCeecccccCCCCCCcccceeEEEE
Q 009216 275 NIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEER 354 (540)
Q Consensus 275 ~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~ 354 (540)
++++++++++.+.|++||+++++|++.++++|.++||++++++++++|++|+++|||++++++++++++.+|+|+.+++.
T Consensus 232 ~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~~ 311 (485)
T PF00118_consen 232 KYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEER 311 (485)
T ss_dssp HHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEEE
T ss_pred hhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred EECCeeEEEEE--cCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCC
Q 009216 355 QVGNERFNIFS--GCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432 (540)
Q Consensus 355 ~ig~~~~~~~~--g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 432 (540)
.+++++|++|+ ++..++.+||+|||+++.+++|+|++++||+++++++++++++|||||++|++|+++|++++...++
T Consensus 312 ~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~~~ 391 (485)
T PF00118_consen 312 EIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSLSG 391 (485)
T ss_dssp EETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCSSS
T ss_pred ccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcccC
Confidence 99999999999 5788899999999999999999999999999999999999999999999999999999999988999
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHH
Q 009216 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAA 512 (540)
Q Consensus 433 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A 512 (540)
++++++++|++||+.||++|++|||+|+.+++.+|+..|.. + .++|+|+.+|++.||.+.|||||+.+|+++|+.|
T Consensus 392 ~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~--~--~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A 467 (485)
T PF00118_consen 392 KEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNN--G--NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSA 467 (485)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHS--T--TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhcc--c--cccCcCccCCceeccccccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998864 3 6899999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcCCC
Q 009216 513 TEAACLILSVDETVKNPK 530 (540)
Q Consensus 513 ~e~a~~iL~id~~i~~~~ 530 (540)
+|+|++||+||++|.++|
T Consensus 468 ~~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 468 VEIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999998765
No 26
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.2e-92 Score=761.45 Aligned_cols=470 Identities=23% Similarity=0.379 Sum_probs=433.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHhhcccc
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (540)
+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++|| +++|+++++++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 3567899999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCC
Q 009216 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (540)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (540)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ + .+.|.++++|++
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~--~----~~~l~~va~ts~------ 151 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVE--D----KEEIAQVATISA------ 151 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHhcc------
Confidence 9999999999999999999999999999999999999999999999999999986 3 468999999884
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCcccc----CCCccccCceEEEeecccc
Q 009216 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 173 ~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~----~~~~~~~n~~Ill~~~~Le 248 (540)
++++.+++++++|+..++++ +.|.|.+..| ..+++++++|++|+++|.+|+|. +|++.++||+|+++|+.|
T Consensus 152 ~~~~~ls~lv~~Av~~v~~~---g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i- 226 (542)
T PRK00013 152 NGDEEIGKLIAEAMEKVGKE---GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKI- 226 (542)
T ss_pred cchHHHHHHHHHHHHHhCcC---CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCcc-
Confidence 47899999999999999754 3577776666 67899999999999999999983 578999999999999964
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCC------ceeEecCC----
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGRVA---- 318 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~------I~~i~~v~---- 318 (540)
+++++ +.++++++.+.+++|||++++|++.++++|..++ |+++++.+
T Consensus 227 ------------~~~~~-----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~ 283 (542)
T PRK00013 227 ------------SNIQD-----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDR 283 (542)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccc
Confidence 45555 4577999999999999999999999999999886 88988776
Q ss_pred -hHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCc---------------------
Q 009216 319 -EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (540)
Q Consensus 319 -~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (540)
+++|+|||.+|||++++ +++++++++||+|+.|++. .+++++|+++.+++
T Consensus 284 r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 360 (542)
T PRK00013 284 RKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVT---KDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYD 360 (542)
T ss_pred hhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEe---cCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHH
Confidence 88999999999999999 7999999999999999975 38899999987765
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHH
Q 009216 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (540)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (540)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++++|+++ ...++++|++
T Consensus 361 ~~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~ 438 (542)
T PRK00013 361 REKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATG 438 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHH
Confidence 78999999999999999999999999999999998 9999999999999999988 6788999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 009216 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (540)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (540)
+++|++||+.||++|++|||+|+.+++.+|+..| . .++|+|+.+|+++||++.|||||+.||.++|+.|+++|+
T Consensus 439 i~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~-~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~ 512 (542)
T PRK00013 439 INIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK-G-----KGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAG 512 (542)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C-----CCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877 3 779999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCCCCCCCCc
Q 009216 518 LILSVDETVKNPKRSGIRER 537 (540)
Q Consensus 518 ~iL~id~~i~~~~~~~~~~~ 537 (540)
+||+||++|...|.+.+.+|
T Consensus 513 ~iL~id~iI~~~~~~~~~~~ 532 (542)
T PRK00013 513 LLLTTEAVVADKPEKKAAAP 532 (542)
T ss_pred HHHHHHHHHhcCCcccCCCC
Confidence 99999999998876544444
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.9e-92 Score=757.43 Aligned_cols=461 Identities=23% Similarity=0.364 Sum_probs=425.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEV 93 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~~ 93 (540)
..+|.+++..|+.+|.+++++++|||||+||+|||+++.|+++|||||+||+++|+++|| ++++++++|++|++++
T Consensus 5 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 84 (542)
T PRK12849 5 IKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVA 84 (542)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCcc
Confidence 467899999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCc
Q 009216 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (540)
Q Consensus 94 GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~ 173 (540)
||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.|.++++|++ +
T Consensus 85 GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~--~----~~~l~~va~ts~------~ 152 (542)
T PRK12849 85 GDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVS--G----SEEIAQVATISA------N 152 (542)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------C
Confidence 999999999999999999999999999999999999999999999999999886 2 467999999984 4
Q ss_pred chHHHHHHHHHHHhhcCCCCCCccceeeeecCCCccc-ceeEEeEEEecccCCcccc----CCCccccCceEEEeecccc
Q 009216 174 EKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 174 ~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~d-s~li~Givl~~~~~~~~~~----~~~~~~~n~~Ill~~~~Le 248 (540)
+++++++++++|+..++.+ +.+.+. .|+..+| +++++|++|+++|.+|+|. .|+++++||+|+++|+.|
T Consensus 153 ~~~~l~~lv~~Av~~v~~~---g~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i- 226 (542)
T PRK12849 153 GDEEIGELIAEAMEKVGKD---GVITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKI- 226 (542)
T ss_pred ChHHHHHHHHHHHHHhccC---CcEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCc-
Confidence 7899999999999999754 333433 6888876 7999999999999999883 578999999999999965
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhC------CceeEecCC----
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA---- 318 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~------~I~~i~~v~---- 318 (540)
+++++ +.++++++.+.+++|||++++|++.++++|.++ +|+++++.+
T Consensus 227 ------------~~~~~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~ 283 (542)
T PRK12849 227 ------------SSLQD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDR 283 (542)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccch
Confidence 34444 456789999999999999999999999999887 999998777
Q ss_pred -hHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCCCC----------------------
Q 009216 319 -EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG---------------------- 370 (540)
Q Consensus 319 -~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~---------------------- 370 (540)
+++|+|||.+|||++++ +++++++++||+|+.|++. .+++++|.|+.++
T Consensus 284 r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~---~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~ 360 (542)
T PRK12849 284 RKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTIT---KDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYD 360 (542)
T ss_pred hHhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEe---eeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHH
Confidence 56699999999999999 6899998899999999975 4889999988765
Q ss_pred -------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHH
Q 009216 371 -------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (540)
Q Consensus 371 -------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (540)
+.|||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++ ..++++|++
T Consensus 361 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~ 438 (542)
T PRK12849 361 REKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAG 438 (542)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHH
Confidence 489999999999999999999999999999999998 99999999999999999988 889999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 009216 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (540)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (540)
+++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|+++||++.|||||+.+|.++|+.|+++|+
T Consensus 439 i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-------~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~ 511 (542)
T PRK12849 439 VEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-------DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAG 511 (542)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-------CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 569999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCCC
Q 009216 518 LILSVDETVKNPKR 531 (540)
Q Consensus 518 ~iL~id~~i~~~~~ 531 (540)
+||+||++|...|.
T Consensus 512 ~iL~id~iI~~~~~ 525 (542)
T PRK12849 512 LLLTTEALVADKPE 525 (542)
T ss_pred HHHhHHHHHhcCCc
Confidence 99999999988764
No 28
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.5e-91 Score=753.74 Aligned_cols=468 Identities=24% Similarity=0.361 Sum_probs=429.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHhhcccc
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (540)
+..+|.+++..|+.++..++++|+|||||+||+|||+++.|+++|||||+|||++|+++|| ++++++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 3567789999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCC
Q 009216 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (540)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (540)
+||||||+++|+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++. .+.+.+++++++
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~------~~~l~~va~~s~------ 152 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTT------NAEIAQVATISA------ 152 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCC------HHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999999999999999999998862 467899998874
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCcccc----CCCccccCceEEEeecccc
Q 009216 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 173 ~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~----~~~~~~~n~~Ill~~~~Le 248 (540)
++++++++++++|+..++++ +.+.+.... +...++++++|++|+++|.+|+|. +|+++++||+|+++|++++
T Consensus 153 ~~~~~l~~lv~~Av~~vg~~---g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~ 228 (541)
T PRK12851 153 NGDAEIGRLVAEAMEKVGNE---GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS 228 (541)
T ss_pred cChHHHHHHHHHHHHHhccc---CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC
Confidence 57899999999999999754 345665544 456789999999999999999873 4889999999999999852
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCc------eeEec-----C
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGR-----V 317 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I------~~i~~-----v 317 (540)
+.++ +.++++++.+.+++|||++++|++.++++|.+++| +++++ +
T Consensus 229 -------------~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~ 284 (541)
T PRK12851 229 -------------NLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDR 284 (541)
T ss_pred -------------cHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccc
Confidence 2222 67889999999999999999999999999999987 77775 9
Q ss_pred ChHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCc---------------------
Q 009216 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (540)
Q Consensus 318 ~~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (540)
++++|+|||.+|||++++ +++++++++||+|+.|++.+ ++++++.|+.++.
T Consensus 285 ~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 361 (541)
T PRK12851 285 RKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYD 361 (541)
T ss_pred cHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999 68889888999999999866 8899999886653
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHH
Q 009216 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (540)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (540)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++.+|++++.. +++++++
T Consensus 362 ~~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~ 439 (541)
T PRK12851 362 REKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTG 439 (541)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHH
Confidence 88999999999999999999999999999999998 9999999999999999998865 8899999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 009216 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (540)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (540)
+++|++||+.||++|++|||+|+.+++.+|+..| .++|+|+.+|+++||++.|||||+.||.++|+.|+++|+
T Consensus 440 ~~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-------~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~ 512 (541)
T PRK12851 440 VEIVRRALEAPVRQIAENAGAEGSVVVGKLREKP-------GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAG 512 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-------CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764 569999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCCCCCCCC
Q 009216 518 LILSVDETVKNPKRSGIRE 536 (540)
Q Consensus 518 ~iL~id~~i~~~~~~~~~~ 536 (540)
+||+||++|...|.+++.+
T Consensus 513 ~iL~id~iI~~~~~~~~~~ 531 (541)
T PRK12851 513 LLLTTEAMVAEKPKKEPAP 531 (541)
T ss_pred HHHhHHHhhhcCCCCCCCC
Confidence 9999999999887665543
No 29
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=2.4e-91 Score=755.15 Aligned_cols=465 Identities=23% Similarity=0.375 Sum_probs=428.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHhhcccc
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSE 92 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~ 92 (540)
+..+|.+++..|+.+|..|+++|+|||||+||+|||+++.|+++|||||+||+++++++|| +++|+++++++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 4678899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCC
Q 009216 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (540)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (540)
+||||||+|+|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + .+.|.++|+|+++
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~--~----~~~l~~va~ts~~----- 164 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVK--T----KEDILNVATISAN----- 164 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHHcC-----
Confidence 9999999999999999999999999999999999999999999999999999986 2 4689999999854
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccc-eeEEeEEEecccCCccc----cCCCccccCceEEEeeccc
Q 009216 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (540)
Q Consensus 173 ~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds-~li~Givl~~~~~~~~~----~~~~~~~~n~~Ill~~~~L 247 (540)
+++++++++++|+..++++ + .|.+..|+++.|+ ++++|++|+++|.+|+| +.|++.++||+|+++|++|
T Consensus 165 -~~~~l~~li~eAv~~vg~~---g--~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L 238 (555)
T PTZ00114 165 -GDVEIGSLIADAMDKVGKD---G--TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKI 238 (555)
T ss_pred -ChHHHHHHHHHHHHHhCcC---C--cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCC
Confidence 4789999999999999754 2 2666789999998 79999999999999998 4678999999999999998
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCC------ceeEec-----
Q 009216 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRD------IFCAGR----- 316 (540)
Q Consensus 248 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~------I~~i~~----- 316 (540)
+ ++++ +.++++++.+.+++|+|++++|++.++++|..++ |+++++
T Consensus 239 ~-------------~~~~-----------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~ 294 (555)
T PTZ00114 239 S-------------SIQS-----------ILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGD 294 (555)
T ss_pred C-------------CHHH-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCc
Confidence 5 2333 6788899999999999999999999999998775 888866
Q ss_pred CChHHHHHHHHHhCCeecccc------cCCCCCCcccceeEEEEEECCeeEEEEEcCC----------------------
Q 009216 317 VAEEDLLRVAAATGGTVQTSV------NNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------------------- 368 (540)
Q Consensus 317 v~~~~le~ia~~tGa~ii~~l------~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~---------------------- 368 (540)
+++++|+|||.+|||+++++. +++++++||+|+.|++.+ +++++|.|+.
T Consensus 295 ~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~ 371 (555)
T PTZ00114 295 NRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSE 371 (555)
T ss_pred chHHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCH
Confidence 778999999999999999997 788888899999999877 5677777665
Q ss_pred -------------CCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHh--hcCCh
Q 009216 369 -------------SGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR--AIAGK 433 (540)
Q Consensus 369 -------------~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~--~~~~~ 433 (540)
.++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++. ..+++
T Consensus 372 ~~~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~ 450 (555)
T PTZ00114 372 YDKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPD 450 (555)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchH
Confidence 56899999999999999999999999999999999988 999999999999999999875 57899
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHH
Q 009216 434 SQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAAT 513 (540)
Q Consensus 434 ~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~ 513 (540)
+|+++++|++||+.||++|++|||+|+.+++.+|+. . ++ .++|+|..+|+++||++.|||||+.||.++|+.|+
T Consensus 451 ~~~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~--~~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~ 524 (555)
T PTZ00114 451 QRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---K--KD-PSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAA 524 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---c--CC-CCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 2 44 78999999999999999999999999999999999
Q ss_pred HHHHHHhchhhhhcCCCCC
Q 009216 514 EAACLILSVDETVKNPKRS 532 (540)
Q Consensus 514 e~a~~iL~id~~i~~~~~~ 532 (540)
++|++||+||++|...|.+
T Consensus 525 ~~A~~iL~id~iI~~~~~~ 543 (555)
T PTZ00114 525 SVASLMLTTEAAIVDLPKE 543 (555)
T ss_pred HHHHHHHhHHHHHHhCCcc
Confidence 9999999999999986655
No 30
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-90 Score=746.89 Aligned_cols=464 Identities=23% Similarity=0.368 Sum_probs=424.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChH----HHHHHHHHhhccccc
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDSEV 93 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~~~~ 93 (540)
..+|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+|||++|+++||+ ++|++++|++|++++
T Consensus 6 ~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~ 85 (544)
T PRK12850 6 IRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLA 85 (544)
T ss_pred ecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchh
Confidence 5678899999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCc
Q 009216 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (540)
Q Consensus 94 GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~ 173 (540)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ + .+.|.++++++++
T Consensus 86 GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~--~----~~~l~~va~~s~~------ 153 (544)
T PRK12850 86 GDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVT--S----SKEIAQVATISAN------ 153 (544)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC------
Confidence 999999999999999999999999999999999999999999999999999886 2 4689999998854
Q ss_pred chHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCcccc----CCCccccCceEEEeeccccc
Q 009216 174 EKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELEL 249 (540)
Q Consensus 174 ~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~----~~~~~~~n~~Ill~~~~Le~ 249 (540)
.++.+++++++|+..++++ +.|.+.... ..-.++++++|++|+++|.+|+|. +|+++++||+|+++|+.+
T Consensus 154 ~~~~l~~lv~eAv~~vg~~---g~i~v~~~~-~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i-- 227 (544)
T PRK12850 154 GDESIGEMIAEAMDKVGKE---GVITVEEAK-TLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI-- 227 (544)
T ss_pred CHHHHHHHHHHHHHHhccc---CceeeEEcc-ccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc--
Confidence 4799999999999999754 233333221 122678999999999999999983 578999999999999964
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCc------eeEec-----CC
Q 009216 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGR-----VA 318 (540)
Q Consensus 250 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I------~~i~~-----v~ 318 (540)
++.++ +.++++++.+.+++|||++++|++.++++|.+++| +++++ ++
T Consensus 228 -----------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~ 285 (544)
T PRK12850 228 -----------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRR 285 (544)
T ss_pred -----------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCccc
Confidence 23222 68889999999999999999999999999999998 88876 99
Q ss_pred hHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCc----------------------
Q 009216 319 EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR---------------------- 371 (540)
Q Consensus 319 ~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~---------------------- 371 (540)
+++|+|||.+|||++++ +++++++++||+|+.|++.+ +++++|.||.+++
T Consensus 286 ~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (544)
T PRK12850 286 KAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDR 362 (544)
T ss_pred HHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 99999999999999999 68999988999999999765 7899999887643
Q ss_pred -------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHH
Q 009216 372 -------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFI 438 (540)
Q Consensus 372 -------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~ 438 (540)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++ ...++++|+++
T Consensus 363 ~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i 440 (544)
T PRK12850 363 EKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGI 440 (544)
T ss_pred HHHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHH
Confidence 89999999999999999999999999999999997 9999999999999999988 67789999999
Q ss_pred HHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHH
Q 009216 439 NSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACL 518 (540)
Q Consensus 439 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~ 518 (540)
++|++||+.||++|++|||+|+.+++.+|+..| .++|+|..+|+++||++.|||||+.||.++|+.|+++|++
T Consensus 441 ~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-------~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~ 513 (544)
T PRK12850 441 DIVRRALEEPLRQIATNAGFEGSVVVGKVAELP-------GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAAL 513 (544)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC-------CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 5689999999999999999999999999999999999999
Q ss_pred HhchhhhhcCCCCCC
Q 009216 519 ILSVDETVKNPKRSG 533 (540)
Q Consensus 519 iL~id~~i~~~~~~~ 533 (540)
||++|++|...|.++
T Consensus 514 iL~id~iI~~~~~~~ 528 (544)
T PRK12850 514 LITTEAMVAEAPKKA 528 (544)
T ss_pred HHhHHHhhccCCCCC
Confidence 999999999877553
No 31
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.3e-90 Score=742.12 Aligned_cols=457 Identities=24% Similarity=0.389 Sum_probs=423.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEV 93 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~~ 93 (540)
..+|.+++..|+++|..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++|+++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 457899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCc
Q 009216 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (540)
Q Consensus 94 GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~ 173 (540)
||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ + .+.|.++++|+++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~--~----~~~l~~va~ts~~------ 150 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVK--T----KEEIAQVATISAN------ 150 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhcC------
Confidence 999999999999999999999999999999999999999999999999999986 3 5789999999975
Q ss_pred chHHHHHHHHHHHhhcCCCCCCccceeeeecCCCccc-ceeEEeEEEecccCCcccc----CCCccccCceEEEeecccc
Q 009216 174 EKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRD-SFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 174 ~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~d-s~li~Givl~~~~~~~~~~----~~~~~~~n~~Ill~~~~Le 248 (540)
.++++++++++|+..++++ +.|.+ ..|++..| +++++|++|++++.+|+|. .|+++++||+|+++|++|
T Consensus 151 ~~~~l~~lv~~A~~~v~~~---~~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l- 224 (520)
T cd03344 151 GDEEIGELIAEAMEKVGKD---GVITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI- 224 (520)
T ss_pred ChHHHHHHHHHHHHHhccC---CcEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC-
Confidence 4899999999999999754 33433 58888888 7999999999999999983 355789999999999986
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCc------eeEecC-----
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDI------FCAGRV----- 317 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I------~~i~~v----- 317 (540)
+++++ +.++++++.+.+++|||++++|++.++++|.++|| +++++.
T Consensus 225 ------------~~~~~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~ 281 (520)
T cd03344 225 ------------SSIQE-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDR 281 (520)
T ss_pred ------------CCHHH-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcc
Confidence 34544 56678999999999999999999999999999988 776654
Q ss_pred ChHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCCCC----------------------
Q 009216 318 AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG---------------------- 370 (540)
Q Consensus 318 ~~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~---------------------- 370 (540)
++++++|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++..+
T Consensus 282 ~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~ 358 (520)
T cd03344 282 RKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYD 358 (520)
T ss_pred cHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 899999999999999999 78889888999999999765 789999988664
Q ss_pred -------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHH
Q 009216 371 -------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (540)
Q Consensus 371 -------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (540)
+.|||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|++++. .++++|++
T Consensus 359 ~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~ 436 (520)
T cd03344 359 KEKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLG 436 (520)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHH
Confidence 599999999999999999999999999999999998 999999999999999999887 89999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 009216 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (540)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (540)
+++|++||+.||++|++|||+|+.+++++|+..| .++|+|..+|+++||++.|||||+.||.++|+.|+++|+
T Consensus 437 ~~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~-------~~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~ 509 (520)
T cd03344 437 IEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-------DGFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVAS 509 (520)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc-------CCEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765 469999999999999999999999999999999999999
Q ss_pred HHhchhhhhc
Q 009216 518 LILSVDETVK 527 (540)
Q Consensus 518 ~iL~id~~i~ 527 (540)
+||++|.+|.
T Consensus 510 ~iL~id~~i~ 519 (520)
T cd03344 510 LLLTTEALVV 519 (520)
T ss_pred HHHhhheEEe
Confidence 9999999985
No 32
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.5e-90 Score=745.36 Aligned_cols=467 Identities=23% Similarity=0.344 Sum_probs=424.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccc----cChHHHHHHHHHhhcccc
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDI----VHPAAKILVDIAKSQDSE 92 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~----~hP~akll~~~~~~~~~~ 92 (540)
+..+|.+++..|+.|+..++++|+|||||+||+|||+++.|+++|||||+|||++|++ +||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 3567789999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCC
Q 009216 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (540)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (540)
+||||||+++|+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++. .+.+.++++++.+
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~------~~~l~~va~~s~~----- 153 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVAS------SAEIAQVGTISAN----- 153 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHhhhcC-----
Confidence 99999999999999999999999999999999999999999999999999999863 2469999988854
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCc-ccceeEEeEEEecccCCccc----cCCCccccCceEEEeeccc
Q 009216 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIEL 247 (540)
Q Consensus 173 ~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~-~ds~li~Givl~~~~~~~~~----~~~~~~~~n~~Ill~~~~L 247 (540)
.++.+++++++|+..++++ +.|.+. .|+.. .++++++|++|+++|.+||| +.|+..++||+|+++++.+
T Consensus 154 -~~~~l~~li~eA~~~vg~~---g~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i 227 (545)
T PRK12852 154 -GDAAIGKMIAQAMQKVGNE---GVITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKL 227 (545)
T ss_pred -ChHHHHHHHHHHHHHhccC---Cceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCcc
Confidence 3789999999999999865 233333 36665 68999999999999999987 2477889999999999864
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhC------CceeEecCC---
Q 009216 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA--- 318 (540)
Q Consensus 248 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~------~I~~i~~v~--- 318 (540)
++++ .+.++++.+.+.+++|||++++|++.++++|..+ +|+++++.+
T Consensus 228 -------------~~~~-----------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~ 283 (545)
T PRK12852 228 -------------SGLQ-----------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (545)
T ss_pred -------------CCHH-----------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCccc
Confidence 3333 3678899999999999999999999999999864 799998655
Q ss_pred --hHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCCCC---------------------
Q 009216 319 --EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (540)
Q Consensus 319 --~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (540)
+++|+|||.+|||++++ +++++++++||+|+.|++.+ +++++|.|+..+
T Consensus 284 ~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (545)
T PRK12852 284 RRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDY 360 (545)
T ss_pred chHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999 78999999999999999866 688999887653
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHH
Q 009216 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (540)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~ 436 (540)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|++++.. ++++|+
T Consensus 361 ~~~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~ 438 (545)
T PRK12852 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQA 438 (545)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHH
Confidence 789999999999999999999999999999999998 9999999999999999998866 788999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 009216 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (540)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (540)
++++|++||+.||++|++|||+|+.+++++|+..| . +++|+|+.+|+++||++.|||||+.||.++|+.|+++|
T Consensus 439 ~i~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~-~-----~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a 512 (545)
T PRK12852 439 GINIVLKALEAPIRQIAENAGVEGSIVVGKILENK-S-----ETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVA 512 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc-C-----CCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876 2 77999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCCCCCCC
Q 009216 517 CLILSVDETVKNPKRSGIR 535 (540)
Q Consensus 517 ~~iL~id~~i~~~~~~~~~ 535 (540)
++||++|++|...|.++.+
T Consensus 513 ~~iL~id~iI~~~~~~~~~ 531 (545)
T PRK12852 513 GLLVTTEAMVAELPKKDAA 531 (545)
T ss_pred HHHHhHHHHhhcCCCCCCC
Confidence 9999999999987765333
No 33
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.8e-90 Score=741.07 Aligned_cols=460 Identities=23% Similarity=0.370 Sum_probs=421.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccCh----HHHHHHHHHhhccccc
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP----AAKILVDIAKSQDSEV 93 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP----~akll~~~~~~~~~~~ 93 (540)
..+|.+++..|+.|+.+++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++++++++++|++++
T Consensus 4 ~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~ 83 (524)
T TIGR02348 4 IKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVA 83 (524)
T ss_pred ccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCcee
Confidence 467889999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCc
Q 009216 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (540)
Q Consensus 94 GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~ 173 (540)
||||||+++|+++||+++.+++++|+||..|++||+.|++.++++|+++++|++ + .+.+.++++|+. +
T Consensus 84 GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~--~----~~~l~~va~ts~------~ 151 (524)
T TIGR02348 84 GDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVK--G----KKEIAQVATISA------N 151 (524)
T ss_pred CCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCC--C----HHHHHHHHHHhc------c
Confidence 999999999999999999999999999999999999999999999999999986 3 468999999884 4
Q ss_pred chHHHHHHHHHHHhhcCCCCCCccceeeeecCCCc-ccceeEEeEEEecccCCccc----cCCCccccCceEEEeecccc
Q 009216 174 EKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 174 ~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~-~ds~li~Givl~~~~~~~~~----~~~~~~~~n~~Ill~~~~Le 248 (540)
+++++++++++|+..++++ +.|.|. .|+.. +++++++|++|+++|.+|+| +.|++.++||+|+++|+++
T Consensus 152 ~~~~l~~lv~~A~~~v~~~---~~i~v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i- 225 (524)
T TIGR02348 152 NDEEIGSLIAEAMEKVGKD---GVITVE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKI- 225 (524)
T ss_pred ChHHHHHHHHHHHHHhCcC---CcEeee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCc-
Confidence 6899999999999999764 344443 36666 66999999999999999987 3578999999999999975
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhC------CceeEecCC----
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADR------DIFCAGRVA---- 318 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~------~I~~i~~v~---- 318 (540)
+++++ +.++++++.+.|++|||++++|++.++++|..+ +|+++++.+
T Consensus 226 ------------~~~~~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~ 282 (524)
T TIGR02348 226 ------------SNIKD-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDR 282 (524)
T ss_pred ------------CCHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccch
Confidence 34444 578899999999999999999999999999875 888997764
Q ss_pred -hHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCc---------------------
Q 009216 319 -EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGR--------------------- 371 (540)
Q Consensus 319 -~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~--------------------- 371 (540)
+++++|||.+|||++++ +++++++++||+|+.|++.+ ++++++.|+..++
T Consensus 283 r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~ 359 (524)
T TIGR02348 283 RKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYD 359 (524)
T ss_pred hhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHH
Confidence 48999999999999999 89999999999999999764 7899998876554
Q ss_pred --------------eEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHH
Q 009216 372 --------------TATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFF 437 (540)
Q Consensus 372 --------------~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~ 437 (540)
.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++++|++ +...+++++++
T Consensus 360 ~~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~ 437 (524)
T TIGR02348 360 REKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIG 437 (524)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHH
Confidence 78999999999999999999999999999999998 999999999999999998 77788999999
Q ss_pred HHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHH
Q 009216 438 INSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAAC 517 (540)
Q Consensus 438 ~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~ 517 (540)
+++|++||+.||++|++|||+|+.+++++|+.. . .++|+|+.+|+++||++.|||||+.||.++|+.|+++|+
T Consensus 438 ~~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~-----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~ 510 (524)
T TIGR02348 438 IDIVKRALEAPLRQIAENAGKDGAVVAEKVKES--K-----GNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAG 510 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--C-----CCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864 2 348999999999999999999999999999999999999
Q ss_pred HHhchhhhhcCCC
Q 009216 518 LILSVDETVKNPK 530 (540)
Q Consensus 518 ~iL~id~~i~~~~ 530 (540)
+||++|++|...|
T Consensus 511 ~iL~id~ii~~~~ 523 (524)
T TIGR02348 511 LLLTTEAVVADKP 523 (524)
T ss_pred HHHhHHHHhhcCC
Confidence 9999999997654
No 34
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-93 Score=694.24 Aligned_cols=518 Identities=31% Similarity=0.576 Sum_probs=499.4
Q ss_pred CchhHhhccccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHH
Q 009216 5 MQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVD 84 (540)
Q Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~ 84 (540)
||.|+..+..+..+..|.++...|++|+++++|++++||||+.|.||+.++.|.++.||||..||+++++.||+|+-+.+
T Consensus 1 m~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmie 80 (527)
T KOG0364|consen 1 MQAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIE 80 (527)
T ss_pred CCCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhh
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHH
Q 009216 85 IAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAAT 164 (540)
Q Consensus 85 ~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~t 164 (540)
.+.+||+++||||||+++|++++|.++..++++|+||+.|+++|.+|++.++..++..++|++..+ ...+..++++
T Consensus 81 l~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~----~~km~~vi~~ 156 (527)
T KOG0364|consen 81 LSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKD----QAKMLRVINS 156 (527)
T ss_pred hhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCccc----HHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999876 6789999999
Q ss_pred hhccCcCCcchHHHHHHHHHHHhhcCCCC----C-CccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCce
Q 009216 165 TLSSKLIGGEKEFFASMVVDAVGAIGDGD----R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPK 239 (540)
Q Consensus 165 sl~sk~~~~~~~~ls~li~~Ai~~~~~~~----d-~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~ 239 (540)
++.+|+.+.|++..+++..+|+..++.++ | ..+.++.|++||.+.+|++++|+.+++...||. |.+.++||+
T Consensus 157 ~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpk---mrr~Ienpr 233 (527)
T KOG0364|consen 157 SVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPK---MRRAIENPR 233 (527)
T ss_pred hhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHH---HHHHhhcCc
Confidence 99999999999999999999999998763 3 577899999999999999999999999999985 578999999
Q ss_pred EEEeecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCCh
Q 009216 240 ILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (540)
Q Consensus 240 Ill~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~ 319 (540)
|+|+||||+|.+.++++.+.+...+++...++.|++++..+++.+....++||++.++++|.+++||.+.||.+++++++
T Consensus 234 ivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rK 313 (527)
T KOG0364|consen 234 IVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRK 313 (527)
T ss_pred EEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeecccccCCCCCCccc-ceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 009216 320 EDLLRVAAATGGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (540)
Q Consensus 320 ~~le~ia~~tGa~ii~~l~~l~~~~lG~-~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~ 398 (540)
.|-.||++++||+++++.+++.+.+.|+ |+.|+.+++|+++|++|..|.+|+.|||++|||+..+++|.+|.++||+.+
T Consensus 314 tDn~ria~acga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~v 393 (527)
T KOG0364|consen 314 TDNNRIARACGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGV 393 (527)
T ss_pred cccchhhhhcCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999997 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCC
Q 009216 399 VRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG 478 (540)
Q Consensus 399 ~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~ 478 (540)
.|+.+-+|+++||||++||.+++.|++.+...++-++..+.+++.||+.+||+|++|+|.+++..+..++..|+. |.
T Consensus 394 arn~ii~PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~--G~- 470 (527)
T KOG0364|consen 394 ARNVIINPKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKE--GQ- 470 (527)
T ss_pred HHHhccCCcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcC--cc-
Confidence 999999999999999999999999999888889999999999999999999999999999999999999999987 77
Q ss_pred CCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCC
Q 009216 479 APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRS 532 (540)
Q Consensus 479 ~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~ 532 (540)
..+|+|..+|.++||.+.++|||..+|.+..++|++.++++||+|+++......
T Consensus 471 ~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~kk~ 524 (527)
T KOG0364|consen 471 RVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKKKR 524 (527)
T ss_pred eeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeeeec
Confidence 889999999999999999999999999999999999999999999999765543
No 35
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-91 Score=692.88 Aligned_cols=510 Identities=36% Similarity=0.593 Sum_probs=481.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccccCCC
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDG 96 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~~GDG 96 (540)
++..|..+|..|..|+.+++++|+|||||-|++||++|+.|++++||||+|||+.|.++||++|+|++.++.|++++|||
T Consensus 13 e~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDg 92 (545)
T KOG0360|consen 13 ERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDG 92 (545)
T ss_pred CcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHh-hcccccCCChHHHHHHHHHHHHHhhccCcCCcch
Q 009216 97 TTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKE-LAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEK 175 (540)
Q Consensus 97 ttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~-~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~~~ 175 (540)
||++++++++|++++.+|+..++||+.+++||+.|+..+++++.+ ++.|++... ++.|.++++|+++||++....
T Consensus 93 ttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg----~~~Lin~~ktsmsSK~i~~ds 168 (545)
T KOG0360|consen 93 TTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLG----TQILINLAKTSMSSKIIGMDS 168 (545)
T ss_pred ceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcc----hHHHHHHHHhhhcceecccch
Confidence 999999999999999999999999999999999999999999976 678887765 789999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC-------CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeecccc
Q 009216 176 EFFASMVVDAVGAIGDGD-------RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELE 248 (540)
Q Consensus 176 ~~ls~li~~Ai~~~~~~~-------d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le 248 (540)
++|++++++|+..+..-+ ..+.+.|.+-.|.+..||.+++|+.++...++.. ||..+.++||+++|+.|.
T Consensus 169 ~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~---m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 169 DFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQM---MPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred HHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhc---cccccccceeeeEecccc
Confidence 999999999998875321 3678899999999999999999999999988754 689999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHH
Q 009216 249 LKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (540)
Q Consensus 249 ~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~ 328 (540)
..+.+....+.+.++++++++++.|....++.+++|.+.|+|||+++++|||+.+.||.++|+++++|+++++|++|+++
T Consensus 246 k~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iaka 325 (545)
T KOG0360|consen 246 KTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKA 325 (545)
T ss_pred cccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccccCC------CCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 009216 329 TGGTVQTSVNNV------VDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA 402 (540)
Q Consensus 329 tGa~ii~~l~~l------~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~ 402 (540)
||+++++++.++ ++..+|+|+.|.+.+|+++.++++.|.+.. .|+|+|||+++..+||++|++|||||+++..
T Consensus 326 tGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL~Vlkrt 404 (545)
T KOG0360|consen 326 TGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKAT-SASIILRGANDFMLDEMERSLHDALCVLKRT 404 (545)
T ss_pred hCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHHHHHHHH
Confidence 999999998754 566799999999999999999999997666 9999999999999999999999999999999
Q ss_pred HhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCC-----
Q 009216 403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGE----- 477 (540)
Q Consensus 403 l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~----- 477 (540)
++++++|||||++|.+++-+|++|+.+...++++++..|+.||.+||++|+.|++.|+.+++++++..|..+.++
T Consensus 405 Les~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~ 484 (545)
T KOG0360|consen 405 LESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLL 484 (545)
T ss_pred hccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998653222
Q ss_pred CCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCCC
Q 009216 478 GAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRSGI 534 (540)
Q Consensus 478 ~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~~~ 534 (540)
..|+|.|+.+|++.|.++.|+++|..+|...|+.|+|.+..+||+|++|.-.|..+.
T Consensus 485 ~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~~~ 541 (545)
T KOG0360|consen 485 LKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPELQV 541 (545)
T ss_pred chhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccccc
Confidence 268999999999999999999999999999999999999999999999987766544
No 36
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3.5e-89 Score=735.13 Aligned_cols=461 Identities=21% Similarity=0.320 Sum_probs=415.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHH----HHHHHHHhhccccc
Q 009216 18 TSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAA----KILVDIAKSQDSEV 93 (540)
Q Consensus 18 ~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a----kll~~~~~~~~~~~ 93 (540)
..+|.++++..+++|..++++|+|||||+||+|||+++.|+++|||||+|||++|+++||++ +|+++++.+|++++
T Consensus 5 ~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~ 84 (529)
T CHL00093 5 ILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVA 84 (529)
T ss_pred eecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCcee
Confidence 56788999999999999999999999999999999999999999999999999999999998 58888999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCCc
Q 009216 94 GDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGG 173 (540)
Q Consensus 94 GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~~ 173 (540)
||||||++||+++||+++.+++++|+||..|++||+.|++.+++.|+++++|++ + ++.|.+++++++ +
T Consensus 85 GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~--d----~~~L~~VA~ts~------~ 152 (529)
T CHL00093 85 GDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVE--D----IQAITQVASISA------G 152 (529)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHhc------c
Confidence 999999999999999999999999999999999999999999999999999986 3 468999999985 4
Q ss_pred chHHHHHHHHHHHhhcCCCCCCccceeeeecCCC--cccceeEEeEEEecccCCccccC----CCccccCceEEEeeccc
Q 009216 174 EKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGT--MRDSFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNIEL 247 (540)
Q Consensus 174 ~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~--~~ds~li~Givl~~~~~~~~~~~----~~~~~~n~~Ill~~~~L 247 (540)
+++.|++|+++|+..++++ + .+.+.++. .+++++++|++|+++|.+|||.. |+.+++||+|+++|++|
T Consensus 153 ~~~~l~~lv~eAv~~vg~~---g---~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~l 226 (529)
T CHL00093 153 NDEEVGSMIADAIEKVGRE---G---VISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKI 226 (529)
T ss_pred ChHHHHHHHHHHHHHhccC---C---ceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCC
Confidence 7899999999999999864 2 33333333 45679999999999999999844 44469999999999999
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHH--HHHh----CCceeEecC----
Q 009216 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQ--YFAD----RDIFCAGRV---- 317 (540)
Q Consensus 248 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~--~l~~----~~I~~i~~v---- 317 (540)
++.+. .+.++++.+.+.+++++|++++|++.++. |+++ .+|++++++
T Consensus 227 e~~~~-----------------------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~ 283 (529)
T CHL00093 227 TLVQQ-----------------------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGD 283 (529)
T ss_pred CchHH-----------------------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCc
Confidence 75321 26888999999999999999999985554 5577 589999988
Q ss_pred -ChHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEEECCeeEEEEEcCC---------CC------------
Q 009216 318 -AEEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQVGNERFNIFSGCP---------SG------------ 370 (540)
Q Consensus 318 -~~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~---------~~------------ 370 (540)
++++++|||.+|||++++ ++++++++++|+|+.+++.+ +++++|.++. ..
T Consensus 284 ~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 360 (529)
T CHL00093 284 RRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYE 360 (529)
T ss_pred chHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHH
Confidence 458899999999999999 79999999999999999764 6788887422 11
Q ss_pred -------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHh-hcCChHHH
Q 009216 371 -------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR-AIAGKSQF 436 (540)
Q Consensus 371 -------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~-~~~~~~~~ 436 (540)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++. ..++++|+
T Consensus 361 ~~~l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~ 439 (529)
T CHL00093 361 KEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELI 439 (529)
T ss_pred HHHHHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHH
Confidence 388899999999999999999999999999999998 999999999999999999886 78899999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 009216 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (540)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (540)
++++|++||+.||++|++|||+|+.+++.+++.. + .++|||..+|+++||++.|||||+.||.++|+.|+|+|
T Consensus 440 ~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~------~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a 512 (529)
T CHL00093 440 GALIVARAILAPLKRIAENAGKNGSVIIEKVQEQ------D-FEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIA 512 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc------C-CCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999752 2 68999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCC
Q 009216 517 CLILSVDETVKNPK 530 (540)
Q Consensus 517 ~~iL~id~~i~~~~ 530 (540)
++||++|++|...|
T Consensus 513 ~~iL~id~ii~~~~ 526 (529)
T CHL00093 513 SMILTTECIIVDKK 526 (529)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999865
No 37
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-89 Score=679.91 Aligned_cols=524 Identities=27% Similarity=0.464 Sum_probs=484.6
Q ss_pred Cccc-Cc-hhHhhccccccccchh-HHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccCh
Q 009216 1 MAAM-MQ-PQIILLKEGTDTSQGK-AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHP 77 (540)
Q Consensus 1 ~~~~-~~-~~~~~~~~~~~~~~g~-~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP 77 (540)
|+.. ++ +--++|+++..+.+|. ++...|++||+.|+++++|+|||+||+|||+|+.|++.+|||.+||+++|+++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 5663 22 3345678888777776 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHH
Q 009216 78 AAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRL 157 (540)
Q Consensus 78 ~akll~~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~ 157 (540)
++|||+++++.|+++.||||+++|+|+++||++|.+|+..|++|.+|++||+.|.+.+++.|+++.+..-.+. ++
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~-----~d 155 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDL-----ED 155 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccc-----cC
Confidence 9999999999999999999999999999999999999999999999999999999999999999865421111 12
Q ss_pred HHHHHHHhhccCcCCcchHHHHHHHHHHHhhcCCC--CCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccc
Q 009216 158 LSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG--DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKF 235 (540)
Q Consensus 158 l~~ia~tsl~sk~~~~~~~~ls~li~~Ai~~~~~~--~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~ 235 (540)
....+++++.||... ..+++++++++|+..+.+. .+.++|+|+++.|+++++|+++.|++|++... ..++.-
T Consensus 156 ~~~~~rs~i~skq~~-~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e-----G~v~~a 229 (537)
T KOG0362|consen 156 KEWALRSVIMSKQYG-NEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE-----GEVKSA 229 (537)
T ss_pred hHHHHHHHHHHhhcc-hHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccC-----Cccccc
Confidence 228889999998754 5789999999999999876 37899999999999999999999999998874 335778
Q ss_pred cCceEEEeecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEe
Q 009216 236 LNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAG 315 (540)
Q Consensus 236 ~n~~Ill~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~ 315 (540)
+.+||++++||++...++.++++.+++++++..|.+.|+..+..+++.|...|+++|++.+.+++++++||++++|++++
T Consensus 230 k~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlq 309 (537)
T KOG0362|consen 230 KDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQ 309 (537)
T ss_pred ccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcC-CCCceEEEEeecCCHHHHHHHHHHHHH
Q 009216 316 RVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGC-PSGRTATIVLRGGADQFIEEAERSLHD 394 (540)
Q Consensus 316 ~v~~~~le~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~-~~~~~~TIll~G~t~~~l~e~~~~i~d 394 (540)
--++.||.||++..||++++.+..+.+..+|+|+++....+|+.+++.|... ...+..|++|||++...+|+.||+++|
T Consensus 310 i~Sk~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVdd 389 (537)
T KOG0362|consen 310 INSKFDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDD 389 (537)
T ss_pred eccHhhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999863 356899999999999999999999999
Q ss_pred HHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCC
Q 009216 395 AIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP 474 (540)
Q Consensus 395 al~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~ 474 (540)
+++..+...++++++||+|++|++|+..|.+++..+++..|++++.|++||+.+|++|++|+|+++.+++++|+..|..
T Consensus 390 gV~tyK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~- 468 (537)
T KOG0362|consen 390 GVNTYKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQG- 468 (537)
T ss_pred hHHHhhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCCCCCeeeecCCC-cccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCCCCCcCC
Q 009216 475 TGEGAPYGVDINTG-GIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKRSGIRERRA 539 (540)
Q Consensus 475 ~~~~~~~G~d~~~~-~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~~~~~~~~~ 539 (540)
| .+.|+|+..+ ...|+.++||||-+..|.++++.|+++|.++|++|+||+..+..++++|..
T Consensus 469 -g--~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~aggp~~~~~ 531 (537)
T KOG0362|consen 469 -G--KNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAGGPKPPGK 531 (537)
T ss_pred -C--CcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccCCCCCCCC
Confidence 3 5688888766 589999999999999999999999999999999999999999998888743
No 38
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=3.2e-88 Score=727.77 Aligned_cols=469 Identities=22% Similarity=0.335 Sum_probs=424.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhcccc----ChHHHHHHHHHhhcccc
Q 009216 17 DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIV----HPAAKILVDIAKSQDSE 92 (540)
Q Consensus 17 ~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~----hP~akll~~~~~~~~~~ 92 (540)
+..+|.+++..|++|+..++++|++||||+||+|||+++.|+++|||||+||+++|+++ ||+++|+++++++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e 84 (546)
T PRK14104 5 EVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADA 84 (546)
T ss_pred eecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhccc
Confidence 35678899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCC
Q 009216 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (540)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (540)
+||||||++||+++||+++.+++++|+||+.|++||+.|++.+++.|+++++|++. .+.+.++++++.+
T Consensus 85 ~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~------~~~l~~va~~s~~----- 153 (546)
T PRK14104 85 AGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTS------NDEIAQVGTISAN----- 153 (546)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCC------HHHHHHHHHHHhc-----
Confidence 99999999999999999999999999999999999999999999999999999863 2468999999854
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCc-ccceeEEeEEEecccCCcccc----CCCccccCceEEEeeccc
Q 009216 173 GEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTM-RDSFLVNGVAFKKTFSYAGFE----QQPKKFLNPKILLLNIEL 247 (540)
Q Consensus 173 ~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~-~ds~li~Givl~~~~~~~~~~----~~~~~~~n~~Ill~~~~L 247 (540)
+++.+++++++|+..++++ +.|.+.. ++.. +++++++|++|+++|.+|||. .++.++++|+|++++..+
T Consensus 154 -~d~~i~~lv~~Av~~vg~~---g~i~v~~--~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i 227 (546)
T PRK14104 154 -GDAEIGKFLADAMKKVGNE---GVITVEE--AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKL 227 (546)
T ss_pred -CchHHHHHHHHHHHHhccC---CceeeEe--cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhh
Confidence 4588999999999999865 3344432 3455 578999999999999999983 456789999999998553
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHh------CCceeEecCC---
Q 009216 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFAD------RDIFCAGRVA--- 318 (540)
Q Consensus 248 e~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~------~~I~~i~~v~--- 318 (540)
+++++ +.++++++.+.+++|||++++|++.++++|.. .+|+++++.+
T Consensus 228 -------------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~ 283 (546)
T PRK14104 228 -------------SSLNE-----------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGD 283 (546)
T ss_pred -------------cCHHH-----------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCc
Confidence 34433 67889999999999999999999999999983 6788886665
Q ss_pred --hHHHHHHHHHhCCeeccc-----ccCCCCCCcccceeEEEEEECCeeEEEEEcCCCC---------------------
Q 009216 319 --EEDLLRVAAATGGTVQTS-----VNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSG--------------------- 370 (540)
Q Consensus 319 --~~~le~ia~~tGa~ii~~-----l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~--------------------- 370 (540)
+++|+|||.+|||+++++ ++++++.+||+|..+++ ++++++++.||..+
T Consensus 284 ~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~ 360 (546)
T PRK14104 284 RRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDY 360 (546)
T ss_pred chHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHH
Confidence 899999999999999999 89999899999999884 77899999998764
Q ss_pred --------------ceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHH
Q 009216 371 --------------RTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF 436 (540)
Q Consensus 371 --------------~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~ 436 (540)
+.+||+|||+|+.+++|++|+++||++++++++++| +|||||++|++++..|+++. ..++++++
T Consensus 361 ~~~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~ 438 (546)
T PRK14104 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKT 438 (546)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHH
Confidence 899999999999999999999999999999999998 99999999999999999874 45789999
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 009216 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (540)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (540)
++++|++||+.||++|++|||+|+.+++.+|+..| . .++|+|+.+|+++||++.|||||+.||.++|+.|+++|
T Consensus 439 ~i~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~-----~-~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a 512 (546)
T PRK14104 439 GVEIVRKALSAPARQIAINAGEDGSVIVGKILEKE-----Q-YSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVA 512 (546)
T ss_pred HHHHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC-----C-CcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998653 2 67999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCCCCCCCCc
Q 009216 517 CLILSVDETVKNPKRSGIRER 537 (540)
Q Consensus 517 ~~iL~id~~i~~~~~~~~~~~ 537 (540)
++||+||++|...|.++.-++
T Consensus 513 ~~iL~id~~I~~~~~~~~~~~ 533 (546)
T PRK14104 513 ALLITTEAMVAELPKKGGAGP 533 (546)
T ss_pred HHHHHHHHHHhcCCcCCCCCC
Confidence 999999999988776554444
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.2e-87 Score=726.68 Aligned_cols=467 Identities=22% Similarity=0.351 Sum_probs=418.0
Q ss_pred cccchh--HHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChH----HHHHHHHHhhcc
Q 009216 17 DTSQGK--AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQD 90 (540)
Q Consensus 17 ~~~~g~--~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~ 90 (540)
+..+|. ++|+..+++|+.|+++|++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 445677 69999999999999999999999999999999999999999999999999999994 999999999999
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCc
Q 009216 91 SEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKL 170 (540)
Q Consensus 91 ~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~ 170 (540)
+++||||||++||+++||+++.+++++|+||..|++||+.|++.+++.|++++.|++ + +.|.++++++++
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~--d-----~~L~~vA~tS~~--- 207 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVE--D-----SELADVAAVSAG--- 207 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCC--H-----HHHHHHHHHhcc---
Confidence 999999999999999999999999999999999999999999999999999999875 2 469999999954
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccc-eeEEeEEEecccCCccc----cCCCccccCceEEEeec
Q 009216 171 IGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDS-FLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNI 245 (540)
Q Consensus 171 ~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds-~li~Givl~~~~~~~~~----~~~~~~~~n~~Ill~~~ 245 (540)
+++.|++|+++|+.+++++ +.|. ...|++.+|+ ++++|++|+++|.+||| ++|+++++||+|+++|+
T Consensus 208 ---~~~~i~~liaeAv~~Vg~~---g~i~--v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~ 279 (600)
T PLN03167 208 ---NNYEVGNMIAEAMSKVGRK---GVVT--LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDK 279 (600)
T ss_pred ---CcHHHHHHHHHHHHHhccC---CcEE--eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcc
Confidence 5789999999999999864 2222 2368888886 89999999999999998 36889999999999998
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHH------hCCceeEecCC-
Q 009216 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA------DRDIFCAGRVA- 318 (540)
Q Consensus 246 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~------~~~I~~i~~v~- 318 (540)
+| ++.+++ .++++++.+.++++||++++|++.++++|. ..+|+++++.+
T Consensus 280 ~i-------------~~~~~l-----------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~ 335 (600)
T PLN03167 280 KI-------------TNARDL-----------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGF 335 (600)
T ss_pred cc-------------CCHHHH-----------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccC
Confidence 64 456664 455678888999999999999999999998 78899998885
Q ss_pred ----hHHHHHHHHHhCCeecc-----cccCCCCCCcccceeEEEEE-----ECC--------eeEEEEEcCC--------
Q 009216 319 ----EEDLLRVAAATGGTVQT-----SVNNVVDEVLGTCEHFEERQ-----VGN--------ERFNIFSGCP-------- 368 (540)
Q Consensus 319 ----~~~le~ia~~tGa~ii~-----~l~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~g~~-------- 368 (540)
+++|+|||.+|||++++ +++++++++||+|+.|++.+ +|+ +++.+|+++.
T Consensus 336 g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~ 415 (600)
T PLN03167 336 GERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYE 415 (600)
T ss_pred CcchHHHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHH
Confidence 88999999999999999 68889888999999999987 765 3666766643
Q ss_pred ----C------CceEEEE-eecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCChHHH-
Q 009216 369 ----S------GRTATIV-LRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQF- 436 (540)
Q Consensus 369 ----~------~~~~TIl-l~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~- 436 (540)
. +..+|++ |||+|+.+++|.||+++||++++++++++| +|||||++|++++.+|++++...++++|+
T Consensus 416 ~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~ 494 (600)
T PLN03167 416 KEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKV 494 (600)
T ss_pred HHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence 0 1134555 999999999999999999999999999999 99999999999999999988777777774
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 009216 437 FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAA 516 (540)
Q Consensus 437 ~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a 516 (540)
++++|++||+.||++|++|||+|+.+++.+|+.. ++ .++|||..+|+++||++.|||||+.||+++|+.|+++|
T Consensus 495 g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~-----~~-~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A 568 (600)
T PLN03167 495 GADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSN-----DN-PKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVA 568 (600)
T ss_pred HHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhc-----CC-CCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999753 33 78999999999999999999999999999999999999
Q ss_pred HHHhchhhhhcCCCCC
Q 009216 517 CLILSVDETVKNPKRS 532 (540)
Q Consensus 517 ~~iL~id~~i~~~~~~ 532 (540)
++||++|++|...+.+
T Consensus 569 ~~iL~iD~iI~~~~~~ 584 (600)
T PLN03167 569 KTFLTSDCVVVEIKEP 584 (600)
T ss_pred HHHHHHHHHhhcCCCC
Confidence 9999999999986544
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-83 Score=627.14 Aligned_cols=504 Identities=26% Similarity=0.464 Sum_probs=478.4
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHhhcccc
Q 009216 13 KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSE 92 (540)
Q Consensus 13 ~~~~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~~~~~~~~ 92 (540)
++..+...-.++..-|+.++..+.+++++.+||+|..||++++.|++.+|+||.+.+.+|+++||.+-++..++.+|++.
T Consensus 7 npkAEv~~~~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~ 86 (520)
T KOG0359|consen 7 NPKAEVAQHQAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDI 86 (520)
T ss_pred CcHHHHHhhhcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcc
Confidence 34444455567888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcCC
Q 009216 93 VGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIG 172 (540)
Q Consensus 93 ~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~~ 172 (540)
.||||||+|+|+++|++++...+..|+||..|.+||+.|.+.++++|+..+.+++ ++.|..+++|++.+|...
T Consensus 87 tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-------~~~L~~va~tsl~Tkv~~ 159 (520)
T KOG0359|consen 87 TGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-------RETLKDVARTSLRTKVHA 159 (520)
T ss_pred cCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-------HHHHHHHHHHhhcCcccH
Confidence 9999999999999999999999999999999999999999999999997776655 689999999999999988
Q ss_pred cchHHHHHHHHHHHhhcCCCC---CCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeeccccc
Q 009216 173 GEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL 249 (540)
Q Consensus 173 ~~~~~ls~li~~Ai~~~~~~~---d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~~Le~ 249 (540)
.-.+.+++++++|+..+.... |..++.+.++...+..|+.+++|++++|+..||. ||+.++|++||++|-+|||
T Consensus 160 ~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpd---mp~~~e~a~iL~~NvSLEY 236 (520)
T KOG0359|consen 160 ELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPD---MPRRVEDAYILICNVSLEY 236 (520)
T ss_pred HHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcc---cccchhceEEEEeeccccc
Confidence 888999999999999887432 7889999999999999999999999999999986 5899999999999999999
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCe----EEEecCcccHHHHHHHHhCCceeEecCChHHHHHH
Q 009216 250 KSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAK----VVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (540)
Q Consensus 250 ~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~----lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~i 325 (540)
++++.++.|-+++.+|.+.+...|++++.+.+++|++.+.. +||+|++||+..++.|++.||++++|.+++.|||+
T Consensus 237 EK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL 316 (520)
T KOG0359|consen 237 EKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERL 316 (520)
T ss_pred cccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999988754 57889999999999999999999999999999999
Q ss_pred HHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhC
Q 009216 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKN 405 (540)
Q Consensus 326 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~ 405 (540)
..+||+..++++++++++.+|+|+.+++.++|+++|+|+++|+++..|||+++||+.+.+.+.|++++|+|+++++++++
T Consensus 317 ~lacGG~a~nsvddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ntl~d 396 (520)
T KOG0359|consen 317 VLACGGEAVNSVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLED 396 (520)
T ss_pred HHhhccceecccccCChhhccccceeEEeeccceeeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeec
Q 009216 406 STVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDI 485 (540)
Q Consensus 406 g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~ 485 (540)
+.++||+|++|..++++|++..++.+++.++++++|++||..+|++|+.|+|+|+.+.+.+|...|.. ...|+|+
T Consensus 397 ~~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~-----~~~g~dl 471 (520)
T KOG0359|consen 397 KCGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEV-----TLRGLDL 471 (520)
T ss_pred cccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhh-----hhccccc
Confidence 99999999999999999998888899999999999999999999999999999999999999998865 4569999
Q ss_pred CCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 009216 486 NTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKR 531 (540)
Q Consensus 486 ~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~ 531 (540)
.+|+-.+....||||.+.||.+.|.+++-+|+.||-+|+++.++.+
T Consensus 472 ~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 472 FRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred ccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999987643
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-68 Score=505.57 Aligned_cols=386 Identities=31% Similarity=0.541 Sum_probs=359.6
Q ss_pred chhHhhccccc--cccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChHHHHHH
Q 009216 6 QPQIILLKEGT--DTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV 83 (540)
Q Consensus 6 ~~~~~~~~~~~--~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~ 83 (540)
++|.++++++. .+..|.++.++|+.+..+++.++++|+||+|++|+++.+.|++.+|||| .|++++++.
T Consensus 9 ~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv 79 (400)
T KOG0357|consen 9 GRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIV 79 (400)
T ss_pred cCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHH
Confidence 45555555443 6789999999999999999999999999999999999999999999999 789999999
Q ss_pred HHHhhcccccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 009216 84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA 163 (540)
Q Consensus 84 ~~~~~~~~~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~ 163 (540)
..+..|+.++|||||.+++|++.+++++.+++.+|+||..|.+||..+...+++.|++.+-+++
T Consensus 80 ~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e---------------- 143 (400)
T KOG0357|consen 80 ILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE---------------- 143 (400)
T ss_pred HhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc----------------
Confidence 9999999999999999999999999999999999999999999999999988877766442210
Q ss_pred HhhccCcCCcchHHHHHHHHHHHhhcCCCCCCccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEe
Q 009216 164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243 (540)
Q Consensus 164 tsl~sk~~~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~ 243 (540)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHH
Q 009216 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL 323 (540)
Q Consensus 244 ~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le 323 (540)
+..+++++++.|+++++|||++||.|.++|.+++..+++||.-.++|
T Consensus 144 ---------------------------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiE 190 (400)
T KOG0357|consen 144 ---------------------------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIE 190 (400)
T ss_pred ---------------------------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceE
Confidence 24567888999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccccCCCCCCcccceeEEEEEEC--CeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHH
Q 009216 324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVG--NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRR 401 (540)
Q Consensus 324 ~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig--~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~ 401 (540)
.||.+||++|+++|++++++.||+|+.|++..+| .+++..++.|++++.+||.+||.+..+++|.||++|||||++|+
T Consensus 191 liAiaT~grIVprF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirn 270 (400)
T KOG0357|consen 191 LIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRN 270 (400)
T ss_pred EEEeecCCeeeccHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999999998 78999999999999999999999999999999999999999999
Q ss_pred HHhCCceeecCCcchHHHHHHHHHHHhhcCChHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCe
Q 009216 402 ATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY 481 (540)
Q Consensus 402 ~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 481 (540)
.+++.++|+|||++|+.|+-++.+.+.++++.+||++++|++||++||-.|++|+|++|++.++++++.+... ++ +++
T Consensus 271 lird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~-~~-~~l 348 (400)
T KOG0357|consen 271 LIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKE-MN-PAL 348 (400)
T ss_pred HhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHh-cC-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875541 34 889
Q ss_pred eeecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCC
Q 009216 482 GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKR 531 (540)
Q Consensus 482 G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~id~~i~~~~~ 531 (540)
|+|+.-..-.||.+.+|+||+..|++.+..|++++.|||+||+++.....
T Consensus 349 Gidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~~ 398 (400)
T KOG0357|consen 349 GIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPGES 398 (400)
T ss_pred CcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCCCC
Confidence 99998878899999999999999999999999999999999999876543
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-61 Score=485.72 Aligned_cols=462 Identities=23% Similarity=0.339 Sum_probs=407.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhcCCCCCcceeeeCCCCCeEEecCHHHHhhhccccChH----HHHHHHHHhhccc
Q 009216 16 TDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPA----AKILVDIAKSQDS 91 (540)
Q Consensus 16 ~~~~~g~~~~~~n~~~~~~l~~~v~sslGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~~~~~~~ 91 (540)
.+..+|.++|...++++..|+++|.+|+||+||+++|.+.+|.|.|||||.|+.+++.+.++. ++++++++.+.++
T Consensus 17 k~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~ 96 (550)
T KOG0356|consen 17 KDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNE 96 (550)
T ss_pred cccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccC
Confidence 357899999999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCcC
Q 009216 92 EVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLI 171 (540)
Q Consensus 92 ~~GDGttt~vlLa~~Ll~~~~~li~~gi~p~~i~~g~~~a~~~~~~~L~~~s~~i~~~~~~~~~~~l~~ia~tsl~sk~~ 171 (540)
..||||||+++|++++..++.+-+.+|.+|..+.+|+..+++.+.+.|.++++|++.. +.+.+++.+|
T Consensus 97 ~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~------eeIaqVAtiS------ 164 (550)
T KOG0356|consen 97 EAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTP------EEIAQVATIS------ 164 (550)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCH------HHHHHHHhhh------
Confidence 9999999999999999999999999999999999999999999999999999999864 6899999987
Q ss_pred CcchHHHHHHHHHHHhhcCCCCCCccceeeeec-CCCccc-ceeEEeEEEecccCCccccC----CCccccCceEEEeec
Q 009216 172 GGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVP-GGTMRD-SFLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNI 245 (540)
Q Consensus 172 ~~~~~~ls~li~~Ai~~~~~~~d~~~I~i~~i~-g~~~~d-s~li~Givl~~~~~~~~~~~----~~~~~~n~~Ill~~~ 245 (540)
.+.+.++.+++.+|+.+++.+ +|+.+. |....| .++++|+-|+++|.+|||.+ ...++++|+++|.+.
T Consensus 165 AngD~~ig~li~~a~~kvG~~------GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~k 238 (550)
T KOG0356|consen 165 ANGDKEIGNLISDAMKKVGRK------GVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEK 238 (550)
T ss_pred cCCcHHHHHHHHHHHHHhCcC------CeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhh
Confidence 677999999999999999988 677665 555555 58999999999999999943 446899999999887
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHH--h-CC-ce-------eE
Q 009216 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA--D-RD-IF-------CA 314 (540)
Q Consensus 246 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~--~-~~-I~-------~i 314 (540)
++ +++++ +.+.++.-.+...++++.+..++..++..|. + ++ +- .|
T Consensus 239 ki-------------~~v~~-----------ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgf 294 (550)
T KOG0356|consen 239 KI-------------SSVQS-----------IVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGF 294 (550)
T ss_pred hh-------------hHHHH-----------HhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCC
Confidence 64 44444 5677777778888999999999998777664 2 22 22 25
Q ss_pred ecCChHHHHHHHHHhCCeeccc------ccCCCCCCcccceeEEEEEE--------------------------------
Q 009216 315 GRVAEEDLLRVAAATGGTVQTS------VNNVVDEVLGTCEHFEERQV-------------------------------- 356 (540)
Q Consensus 315 ~~v~~~~le~ia~~tGa~ii~~------l~~l~~~~lG~~~~v~~~~i-------------------------------- 356 (540)
++-++..+.+++.+||+.++.. ++..+.+++|.|..+...+-
T Consensus 295 Gdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~y 374 (550)
T KOG0356|consen 295 GDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 (550)
T ss_pred cchHHHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888999999999999999873 55677789999998875320
Q ss_pred ----CCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHhhcCC
Q 009216 357 ----GNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432 (540)
Q Consensus 357 ----g~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~~~~~ 432 (540)
.++|...|+|+ +++|.++|.++.+++|.+.+++|||+++++++++| +|||||+++++|+..|.+....-..
T Consensus 375 e~ekl~er~a~ls~g----vavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~ 449 (550)
T KOG0356|consen 375 EKEKLNERLAKLSGG----VAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNF 449 (550)
T ss_pred hHhHHHHHHHHhcCC----eEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccch
Confidence 13345555555 99999999999999999999999999999999999 9999999999999999986553445
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeeeecCCCcccccccCCcccchHHHHHHHHHH
Q 009216 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAA 512 (540)
Q Consensus 433 ~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~~~~G~d~~~~~~~d~~~~gi~dp~~vk~~~l~~A 512 (540)
+++.+++++.+||..|..+++.|||.|+..++.+++. ..+|||..+|+++||.+.||+||+.|.+.+|..|
T Consensus 450 ~~k~G~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~---------~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a 520 (550)
T KOG0356|consen 450 DQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN---------DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDA 520 (550)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh---------hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhh
Confidence 7888899999999999999999999999999999983 3489999999999999999999999999999999
Q ss_pred HHHHHHHhchhhhhcCCCCCC
Q 009216 513 TEAACLILSVDETVKNPKRSG 533 (540)
Q Consensus 513 ~e~a~~iL~id~~i~~~~~~~ 533 (540)
..+|+++++++.+|...|.+.
T Consensus 521 ~~vasll~tte~vvteipk~~ 541 (550)
T KOG0356|consen 521 AGVASLLTTTEAVVTEIPKEE 541 (550)
T ss_pred hHHHHHHhhheeEEEeccccc
Confidence 999999999999998876654
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2e-39 Score=318.93 Aligned_cols=228 Identities=25% Similarity=0.392 Sum_probs=210.8
Q ss_pred CcchHHHHHHHHHHHhhcCCC-----C-CCc-cceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEee
Q 009216 172 GGEKEFFASMVVDAVGAIGDG-----D-RLN-MIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLN 244 (540)
Q Consensus 172 ~~~~~~ls~li~~Ai~~~~~~-----~-d~~-~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~ 244 (540)
..|.++|++++++|+..+.+. . |.+ +|+|++++||++.||++++|+++++++.++. ||++++||||++++
T Consensus 17 ~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~---m~~~i~n~kIlll~ 93 (261)
T cd03334 17 ESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKR---MPSKIKNPRILLLQ 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCcc---CCcccCCCcEEEEe
Confidence 467899999999999998643 1 443 6999999999999999999999999998864 68999999999999
Q ss_pred cccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHH
Q 009216 245 IELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLR 324 (540)
Q Consensus 245 ~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ 324 (540)
++|++++++ +++.+++++++.|++++.+++++|.+.|++||+|+++|++.+++||.++||++++++++++|+|
T Consensus 94 ~~Le~~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~r 166 (261)
T cd03334 94 GPLEYQRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLER 166 (261)
T ss_pred eeecccccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHH
Confidence 999999876 3578899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeccc-ccCCCCCCcccceeEEEEEECC-----eeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHH
Q 009216 325 VAAATGGTVQTS-VNNVVDEVLGTCEHFEERQVGN-----ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMI 398 (540)
Q Consensus 325 ia~~tGa~ii~~-l~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~ 398 (540)
||++|||+++++ .++++++.+|+|+.|++.++|+ ++|++|+||+.++.+||+|||+|+..++|+||+++||+++
T Consensus 167 Ia~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~lde~eR~i~Dal~v 246 (261)
T cd03334 167 ISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELKKVKRVVEFMVFA 246 (261)
T ss_pred HHHHhCCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 4588999999999999999996 6999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcee
Q 009216 399 VRRATKNSTVV 409 (540)
Q Consensus 399 ~~~~l~~g~vv 409 (540)
++++..+..++
T Consensus 247 ~~~~~le~~~~ 257 (261)
T cd03334 247 AYHLKLETSFL 257 (261)
T ss_pred HHHHHHhHHHH
Confidence 99998877543
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.8e-36 Score=290.35 Aligned_cols=205 Identities=43% Similarity=0.692 Sum_probs=195.5
Q ss_pred HHHHHHHHHhhccCcCCcchHHHHHHHHHHHhhcCCCC---CCccceeeeecCCCcccceeEEeEEEecccCCccccCCC
Q 009216 156 RLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGD---RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQP 232 (540)
Q Consensus 156 ~~l~~ia~tsl~sk~~~~~~~~ls~li~~Ai~~~~~~~---d~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~ 232 (540)
+.|.++++|+++||+ +.|.+++++++++|+..++++. +.++|+|++++||+++||++++|++|++++.+++| |
T Consensus 2 ~~l~~ia~ts~~sk~-~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m---~ 77 (209)
T cd03333 2 ELLLQVATTSLNSKL-SSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM---P 77 (209)
T ss_pred hHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC---C
Confidence 478999999999999 9999999999999999998742 57899999999999999999999999999999874 8
Q ss_pred ccccCceEEEeecccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCce
Q 009216 233 KKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312 (540)
Q Consensus 233 ~~~~n~~Ill~~~~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~ 312 (540)
++++||+|++++++|++ ||+++++|++.++++|.++||+
T Consensus 78 ~~~~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~ 116 (209)
T cd03333 78 KRLENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIM 116 (209)
T ss_pred eEcCCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCE
Confidence 99999999999999975 9999999999999999999999
Q ss_pred eEecCChHHHHHHHHHhCCeecccccCCCCCCcccceeEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHH
Q 009216 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSL 392 (540)
Q Consensus 313 ~i~~v~~~~le~ia~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i 392 (540)
+++++++++|+|||++|||+++++++++++..+|+|+.|++.++++++|++|.+|..+..|||+|||+|+.+++|.||++
T Consensus 117 ~v~~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l 196 (209)
T cd03333 117 AVRRVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSL 196 (209)
T ss_pred EEEeCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 009216 393 HDAIMIVRRATKN 405 (540)
Q Consensus 393 ~dal~~~~~~l~~ 405 (540)
+||++++++++++
T Consensus 197 ~dal~~~~~~~~~ 209 (209)
T cd03333 197 HDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.89 E-value=1.2e-22 Score=226.25 Aligned_cols=233 Identities=22% Similarity=0.341 Sum_probs=207.7
Q ss_pred cchHHHHHHHHHHHhhcCCCC------C-CccceeeeecCCCcccceeEEeEEEecccCCccccCCCccccCceEEEeec
Q 009216 173 GEKEFFASMVVDAVGAIGDGD------R-LNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNI 245 (540)
Q Consensus 173 ~~~~~ls~li~~Ai~~~~~~~------d-~~~I~i~~i~g~~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~~Ill~~~ 245 (540)
.|.+.+..++++|...+.++- | .++++|++|.+|+..||+++.|+++.+..+|.. |..++++|+|+++.+
T Consensus 332 ~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~---M~~~~e~prilll~g 408 (1598)
T KOG0230|consen 332 EWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKR---MATKYENPRILLLGG 408 (1598)
T ss_pred hHHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhh---hhhhccCCceEEEec
Confidence 578889999999999988741 2 689999999999999999999999999998864 689999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHH
Q 009216 246 ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRV 325 (540)
Q Consensus 246 ~Le~~~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~i 325 (540)
+|+|++-.. ....++.++++|.++++.++.+|...+++++++.++|+..|+++|...+|..+-++++.-|+||
T Consensus 409 ~leyqrisn-------~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRI 481 (1598)
T KOG0230|consen 409 PLEYQRISN-------QLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERI 481 (1598)
T ss_pred chhhhhhhc-------cccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHH
Confidence 999987542 2345666777799999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccccCCCCCCcccceeEEEEEEC-----CeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 009216 326 AAATGGTVQTSVNNVVDEVLGTCEHFEERQVG-----NERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 (540)
Q Consensus 326 a~~tGa~ii~~l~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~ 400 (540)
+++|||.|+++++.++...+|+|..|++.++- .+.+.+|+||+.+..|||+|||....++++.|++++-++.+++
T Consensus 482 sR~tga~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay 561 (1598)
T KOG0230|consen 482 SRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAY 561 (1598)
T ss_pred HHHhcCceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987664 4579999999999999999999999999999999999999998
Q ss_pred HHHhCCceeecCCcc
Q 009216 401 RATKNSTVVAGGGAI 415 (540)
Q Consensus 401 ~~l~~g~vvpGGG~~ 415 (540)
+..-+-.++..-|+.
T Consensus 562 ~l~LE~SflaDe~as 576 (1598)
T KOG0230|consen 562 HLALETSFLADEGAS 576 (1598)
T ss_pred HHHHhhhhhhccCCc
Confidence 875544455555553
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=52.91 E-value=52 Score=28.37 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHHHHHHHHH
Q 009216 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAA 328 (540)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~le~ia~~ 328 (540)
...+.|++.|+++|++. .+++-+..+|..+||-+..-.+.+.=+-|-..
T Consensus 56 ~~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~ 104 (121)
T COG1433 56 RIAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAF 104 (121)
T ss_pred HHHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHH
Confidence 45788889999999998 78999999999999998876663333333333
No 47
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=51.09 E-value=35 Score=27.82 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCC
Q 009216 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (540)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~ 318 (540)
...+.|...++++|++. ++++.+...|.++||.++....
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 44556667899999996 6999999999999999987665
No 48
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=48.45 E-value=48 Score=26.46 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecC
Q 009216 279 DKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV 317 (540)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v 317 (540)
...+.+...+++++||. ++++.+...|.++||-++...
T Consensus 44 ~~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 44 KIAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp HHHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEEST
T ss_pred hHHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcC
Confidence 34455566899999988 589999999999999999873
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=44.53 E-value=65 Score=26.08 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.9
Q ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCC
Q 009216 280 KLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (540)
Q Consensus 280 ~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~ 318 (540)
..+.+...++++|+|. ++++.+...|.++||.++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 4455667899999998 5999999999999999987665
No 50
>PF12846 AAA_10: AAA-like domain
Probab=35.12 E-value=1e+02 Score=30.25 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCeEEEecCcccHHH-----HHHHHhCCceeEecCChHHHHHHHHHhCCe
Q 009216 276 IIYDKLDKCVQSGAKVVLSRLAIGDLA-----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (540)
Q Consensus 276 ~l~~~v~~i~~~~~~lii~~~~i~~~a-----~~~l~~~~I~~i~~v~~~~le~ia~~tGa~ 332 (540)
.+..++....+.|+.+++....+++.. ..++...+...+.+....+.+.+++..|.+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 367788888899999999999999887 789999999999999999988899988854
No 51
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=30.45 E-value=68 Score=31.19 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChH
Q 009216 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (540)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~ 320 (540)
.+++.|....|+++|++...-.+++.++..+.||..++.++..
T Consensus 182 ~emv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 182 SEMVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 3678899999999999999999999999999999998877754
No 52
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=28.56 E-value=74 Score=31.44 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChH
Q 009216 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 (540)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~ 320 (540)
.+++.|.+..|+++|++...-.+++.++..+.||..++.++..
T Consensus 211 ~emv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 211 SEMVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 4678999999999999999999999999999999998877653
No 53
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=25.95 E-value=1.9e+02 Score=26.32 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=33.5
Q ss_pred HHHHHHcCCeEEEecCcccHHHHHHHHhCCceeE--ecCC-----hHHHHHHHHHhCC
Q 009216 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA--GRVA-----EEDLLRVAAATGG 331 (540)
Q Consensus 281 v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i--~~v~-----~~~le~ia~~tGa 331 (540)
++.|.+.+++|||......+...+.|.+.||.++ .... .+.++.+++++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 5677888999999876555546677889998543 2211 1345666777664
No 54
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=23.62 E-value=2.3e+02 Score=23.26 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=26.4
Q ss_pred cCCeEEEecCcccHHHHHHHHhCCceeEecCC
Q 009216 287 SGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (540)
Q Consensus 287 ~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~ 318 (540)
.++++||+. ++++.+...|.++||.++..-.
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 589998887 7899999999999999985544
No 55
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=23.60 E-value=2.7e+02 Score=23.55 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCC----hHHHHHHHHHhC
Q 009216 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVA----EEDLLRVAAATG 330 (540)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~----~~~le~ia~~tG 330 (540)
...++.+ .++++|||. +|++.+...|.+.||.++..-. .+-++.+.+..-
T Consensus 55 ~~~~~~l--~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~ 108 (119)
T TIGR02663 55 APKIEAL--KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLK 108 (119)
T ss_pred HHHHHHh--CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHc
Confidence 3444444 589998887 7899999999999999986322 455677766653
No 56
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=23.12 E-value=5.8e+02 Score=25.57 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeE
Q 009216 263 PSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCA 314 (540)
Q Consensus 263 ~~~l~~~~~~E~~~l~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i 314 (540)
++++.++ -..+++++++.+.+.+..+++...+-.....+++.+.|+-++
T Consensus 199 p~~f~e~---~~p~~k~i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~ 247 (330)
T cd03465 199 PEDFKEF---SLPYLKKVFDAIKALGGPVIHHNCGDTAPILELMADLGADVF 247 (330)
T ss_pred HHHHHHH---hhHHHHHHHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeE
Confidence 4444433 355677888888777766665333333234555555554443
No 57
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=22.83 E-value=1.4e+02 Score=29.44 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCChHH
Q 009216 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEED 321 (540)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~~~ 321 (540)
.++++|.+..|++++++--.-.+++.+...+.||+.++.++-..
T Consensus 211 ~EmV~Kaa~~Gipil~S~SAPT~Lai~~Ae~~~iTLvgf~R~~~ 254 (266)
T COG1526 211 SEMVQKAAMAGIPILASVSAPTSLAIEAAERLGLTLVGFVRGGR 254 (266)
T ss_pred HHHHHHHHHhCCcEEEEcccchHHHHHHHHHcCCEEEEEecCCc
Confidence 36789999999999999988899999999999999988777543
No 58
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.72 E-value=2.3e+02 Score=27.04 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=36.4
Q ss_pred HHHHHHcCCeEEEecCcccH-HHHHHHHhCCceeEecC--C----hHHHHHHHHHhCCe
Q 009216 281 LDKCVQSGAKVVLSRLAIGD-LATQYFADRDIFCAGRV--A----EEDLLRVAAATGGT 332 (540)
Q Consensus 281 v~~i~~~~~~lii~~~~i~~-~a~~~l~~~~I~~i~~v--~----~~~le~ia~~tGa~ 332 (540)
++.|.+.+++|||.....++ ...+.|.+.|+.++-.- . .+.++.|++++|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 67788899999998755444 34778888988654321 1 34477888888865
No 59
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=22.68 E-value=3.6e+02 Score=21.58 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCceeEecCChHHHHHHH
Q 009216 278 YDKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVA 326 (540)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~a~----~~l~~~~I~~i~~v~~~~le~ia 326 (540)
++.++.+.+-.+.+++.++++++... .+|.++||..+---++.+|.+.+
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAc 71 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHV 71 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 45566666667889999999987433 45679999988776766655543
No 60
>smart00574 POX domain associated with HOX domains.
Probab=22.37 E-value=2.5e+02 Score=24.83 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCceeecCCcchHHHHHHHHHHHh
Q 009216 383 QFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESR 428 (540)
Q Consensus 383 ~~l~e~~~~i~dal~~~~~~l~~g~vvpGGG~~e~~l~~~L~~~~~ 428 (540)
.+++|++++.+-...-++.++..=..|+|+|++-...+-+|+..+.
T Consensus 84 ~mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~Sr 129 (140)
T smart00574 84 SMLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISR 129 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4557777777666665555544333678999888877777776543
No 61
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=21.99 E-value=2.6e+02 Score=22.75 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.5
Q ss_pred cCCeEEEecCcccHHHHHHHHhCCceeEecCC
Q 009216 287 SGAKVVLSRLAIGDLATQYFADRDIFCAGRVA 318 (540)
Q Consensus 287 ~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~ 318 (540)
.++++|||. +|++.+...|.++||.++....
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 488888877 7899999999999999986554
No 62
>PRK07714 hypothetical protein; Provisional
Probab=21.58 E-value=3.7e+02 Score=22.02 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCceeEecCChHHHHHHHHHhCCe
Q 009216 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (540)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~a~----~~l~~~~I~~i~~v~~~~le~ia~~tGa~ 332 (540)
...+.+.+-.+.+||.+.+.++... +++..++|.++....+ +.|..++|-.
T Consensus 25 ~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk---~eLG~a~Gk~ 79 (100)
T PRK07714 25 LVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR---QQLGHAIGKD 79 (100)
T ss_pred HHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH---HHHHHHhCCC
Confidence 3455666667889999998886433 3456788888876665 4556677743
No 63
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=21.47 E-value=1.1e+02 Score=29.74 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecCCh
Q 009216 278 YDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAE 319 (540)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v~~ 319 (540)
.+++.|....|+++|++...-.+.+.++..+.||..++.++.
T Consensus 182 ~emv~Ka~~aGipvivS~sapT~~av~~A~~~gitLigf~R~ 223 (236)
T PF02634_consen 182 SEMVQKAARAGIPVIVSRSAPTSLAVELARKLGITLIGFARG 223 (236)
T ss_dssp HHHHHHHHHHT-SEEEESS-B-HHHHHHHHHHT-EEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEcccccHHHHHHHHHhCCEEEEEecC
Confidence 367888889999999999999999999999999998876654
No 64
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=20.92 E-value=1e+02 Score=29.99 Aligned_cols=27 Identities=37% Similarity=0.628 Sum_probs=24.5
Q ss_pred EEEEeecCCHHHHHHHHHHHHHHHHHHH
Q 009216 373 ATIVLRGGADQFIEEAERSLHDAIMIVR 400 (540)
Q Consensus 373 ~TIll~G~t~~~l~e~~~~i~dal~~~~ 400 (540)
.||+++| ++..+++.++.++|-.++++
T Consensus 121 mTIVl~G-td~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 121 MTIVLQG-TDGVVEQARRQIEDLVNVYA 147 (309)
T ss_pred ceEEEec-cHHHHHHHHHHHHHhhhhhe
Confidence 4999999 68999999999999998876
No 65
>PRK07283 hypothetical protein; Provisional
Probab=20.87 E-value=3.5e+02 Score=22.16 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCceeEecCChHHHHHHHHHhCC
Q 009216 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGG 331 (540)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~a~----~~l~~~~I~~i~~v~~~~le~ia~~tGa 331 (540)
...+.+.+-.+.+||.+.+.++... +.+..++|.++....+ +.|..++|-
T Consensus 25 ~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~---~eLG~a~Gk 78 (98)
T PRK07283 25 LVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFST---LELSAAVGK 78 (98)
T ss_pred HHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH---HHHHHHhCC
Confidence 3445566667889999999887655 5566789988876655 456677773
No 66
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=20.66 E-value=2.3e+02 Score=29.34 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHHHHHcCCeEEEecCcccHHHHHHHHhCCceeEecC---C----hHHHHHHHHHhCCe
Q 009216 281 LDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRV---A----EEDLLRVAAATGGT 332 (540)
Q Consensus 281 v~~i~~~~~~lii~~~~i~~~a~~~l~~~~I~~i~~v---~----~~~le~ia~~tGa~ 332 (540)
+++|+..+++|||......+...+.|.+.||.++..- . .+.++.+++++|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 6788889999999865545556778889999875432 1 13456777777753
No 67
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.21 E-value=4.1e+02 Score=21.12 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCeEEEecCcccHHHH----HHHHhCCceeEecCChHHHHHHHHHhCCe
Q 009216 279 DKLDKCVQSGAKVVLSRLAIGDLAT----QYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (540)
Q Consensus 279 ~~v~~i~~~~~~lii~~~~i~~~a~----~~l~~~~I~~i~~v~~~~le~ia~~tGa~ 332 (540)
..++.+.+-.+.+||.+.+.++... +++..++|.+...-.+ +.|.+++|-.
T Consensus 15 ~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~---~eLG~A~G~~ 69 (82)
T PRK13601 15 QTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM---KELGVMCGID 69 (82)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH---HHHHHHHCCc
Confidence 3456666678899999999886433 4567889988655444 5566677643
No 68
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=20.19 E-value=54 Score=32.46 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=30.9
Q ss_pred ECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHhCCceeecC
Q 009216 356 VGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGG 412 (540)
Q Consensus 356 ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~~~~i~dal~~~~~~l~~g~vvpGG 412 (540)
||+..++++....+...|-|+-+..-..--.-.|++ -|++++|-+.+.|+++|||
T Consensus 47 IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDR--vAl~iir~Aee~GkL~~gg 101 (391)
T KOG1481|consen 47 IGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDR--VALYIIRTAEEKGKLVRGG 101 (391)
T ss_pred hCCCceEEeeccccccccchhhhhhccCCCCChhhh--hHHHHHHHHHHcCCcccCc
Confidence 355555555544444444544322100000112333 3899999999999999997
No 69
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.05 E-value=4.1e+02 Score=20.96 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCeEEEecCcccHHH----HHHHHhCCceeEecCChHHHHHHHHHhCCe
Q 009216 278 YDKLDKCVQSGAKVVLSRLAIGDLA----TQYFADRDIFCAGRVAEEDLLRVAAATGGT 332 (540)
Q Consensus 278 ~~~v~~i~~~~~~lii~~~~i~~~a----~~~l~~~~I~~i~~v~~~~le~ia~~tGa~ 332 (540)
+..++.|.+-.+.+|+.+.+.++.. .+++.+++|.++.--.+ +.|..++|-.
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~---~eLG~a~G~~ 72 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM---KKLGKACGIE 72 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH---HHHHHHHCCC
Confidence 3445666667889999999998753 34567889888765544 5566677643
Done!