Query 009217
Match_columns 540
No_of_seqs 286 out of 2458
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 21:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 1E-103 2E-108 845.7 54.4 533 1-538 426-968 (977)
2 PRK14099 glycogen synthase; Pr 100.0 2E-76 4.4E-81 623.4 49.2 464 55-539 2-481 (485)
3 PRK14098 glycogen synthase; Pr 100.0 7.1E-76 1.5E-80 619.9 50.2 471 53-539 2-488 (489)
4 PLN02316 synthase/transferase 100.0 1E-73 2.2E-78 626.0 49.2 440 50-539 581-1036(1036)
5 TIGR02095 glgA glycogen/starch 100.0 2.5E-73 5.4E-78 604.2 49.1 465 57-537 1-473 (473)
6 PRK00654 glgA glycogen synthas 100.0 2.9E-73 6.2E-78 601.2 49.0 459 57-539 1-465 (466)
7 COG0297 GlgA Glycogen synthase 100.0 3.7E-70 8E-75 560.7 41.8 468 57-539 1-480 (487)
8 cd03791 GT1_Glycogen_synthase_ 100.0 5E-68 1.1E-72 565.2 49.6 467 58-536 1-476 (476)
9 TIGR02468 sucrsPsyn_pln sucros 100.0 7.8E-47 1.7E-51 413.2 34.7 455 45-538 158-672 (1050)
10 TIGR02470 sucr_synth sucrose s 100.0 1.7E-46 3.6E-51 403.5 36.4 451 30-534 233-745 (784)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 1.7E-45 3.7E-50 386.9 38.1 404 58-534 2-438 (439)
12 TIGR02094 more_P_ylases alpha- 100.0 4E-45 8.7E-50 388.6 40.2 460 59-534 1-598 (601)
13 TIGR03449 mycothiol_MshA UDP-N 100.0 1.8E-44 4E-49 376.3 35.6 388 59-538 1-403 (405)
14 PLN00142 sucrose synthase 100.0 1.5E-44 3.3E-49 388.2 32.3 450 30-533 257-767 (815)
15 TIGR02149 glgA_Coryne glycogen 100.0 1.9E-43 4.1E-48 366.4 37.4 374 57-537 1-387 (388)
16 PLN02871 UDP-sulfoquinovose:DA 100.0 2.1E-43 4.7E-48 373.9 37.4 378 54-538 56-436 (465)
17 PRK10307 putative glycosyl tra 100.0 2.4E-43 5.1E-48 368.7 34.1 391 57-538 1-409 (412)
18 cd03796 GT1_PIG-A_like This fa 100.0 2.7E-42 5.8E-47 358.9 36.8 363 58-538 1-369 (398)
19 cd04962 GT1_like_5 This family 100.0 5.6E-41 1.2E-45 345.5 37.9 366 57-537 1-371 (371)
20 PRK15484 lipopolysaccharide 1, 100.0 7.7E-41 1.7E-45 345.0 36.7 358 58-537 4-378 (380)
21 PRK15427 colanic acid biosynth 100.0 4.6E-40 9.9E-45 341.5 36.3 278 183-537 116-406 (406)
22 cd04299 GT1_Glycogen_Phosphory 100.0 4.4E-39 9.5E-44 347.4 39.4 461 58-537 87-691 (778)
23 TIGR03088 stp2 sugar transfera 100.0 1.9E-39 4E-44 335.0 34.8 360 57-537 2-373 (374)
24 cd03818 GT1_ExpC_like This fam 100.0 3.1E-39 6.6E-44 335.8 36.4 373 58-529 1-394 (396)
25 PRK10125 putative glycosyl tra 100.0 1.2E-39 2.5E-44 337.3 31.5 372 57-537 1-405 (405)
26 cd03792 GT1_Trehalose_phosphor 100.0 5.6E-39 1.2E-43 331.1 34.1 359 58-537 1-372 (372)
27 cd03800 GT1_Sucrose_synthase T 100.0 1.4E-38 3.1E-43 330.5 35.9 382 58-529 1-396 (398)
28 cd03802 GT1_AviGT4_like This f 100.0 1.6E-38 3.5E-43 322.3 34.5 330 57-535 1-335 (335)
29 cd03805 GT1_ALG2_like This fam 100.0 5.6E-39 1.2E-43 333.4 31.0 372 57-528 1-391 (392)
30 PRK15179 Vi polysaccharide bio 100.0 8.6E-38 1.9E-42 337.2 34.6 383 52-535 276-692 (694)
31 PLN02846 digalactosyldiacylgly 100.0 7.4E-38 1.6E-42 322.2 30.9 379 54-535 2-390 (462)
32 KOG1111 N-acetylglucosaminyltr 100.0 1.2E-38 2.7E-43 302.2 22.5 359 57-538 1-368 (426)
33 cd04955 GT1_like_6 This family 100.0 4.5E-37 9.7E-42 315.1 36.0 355 58-535 1-363 (363)
34 cd03819 GT1_WavL_like This fam 100.0 7.7E-37 1.7E-41 312.5 33.8 340 70-525 7-355 (355)
35 cd04951 GT1_WbdM_like This fam 100.0 2.8E-36 6E-41 308.7 35.4 353 58-535 1-359 (360)
36 PRK09922 UDP-D-galactose:(gluc 100.0 6.2E-37 1.3E-41 314.2 28.7 349 57-538 1-357 (359)
37 cd03825 GT1_wcfI_like This fam 100.0 1.8E-36 3.8E-41 310.8 31.9 345 57-537 1-365 (365)
38 cd03795 GT1_like_4 This family 100.0 7.3E-36 1.6E-40 305.3 34.9 351 58-526 1-357 (357)
39 cd05844 GT1_like_7 Glycosyltra 100.0 2.9E-36 6.4E-41 309.9 31.4 274 184-532 81-366 (367)
40 PRK15490 Vi polysaccharide bio 100.0 6.7E-36 1.5E-40 308.2 33.6 291 173-536 270-575 (578)
41 cd03813 GT1_like_3 This family 100.0 4.2E-36 9.2E-41 318.5 29.3 295 184-535 172-475 (475)
42 cd03821 GT1_Bme6_like This fam 100.0 3.3E-35 7.2E-40 300.5 32.7 366 58-529 1-373 (375)
43 PF08323 Glyco_transf_5: Starc 100.0 1.2E-37 2.6E-42 299.8 13.2 232 58-298 1-244 (245)
44 cd03812 GT1_CapH_like This fam 100.0 3.5E-35 7.6E-40 300.6 32.2 350 58-527 1-354 (358)
45 cd03807 GT1_WbnK_like This fam 100.0 5.6E-35 1.2E-39 297.7 32.7 358 58-535 1-365 (365)
46 cd03799 GT1_amsK_like This is 100.0 9.8E-35 2.1E-39 296.7 33.4 342 58-528 1-354 (355)
47 cd03822 GT1_ecORF704_like This 100.0 1.6E-34 3.4E-39 295.7 34.7 355 58-535 1-366 (366)
48 cd03814 GT1_like_2 This family 100.0 1.2E-34 2.7E-39 296.0 33.7 360 58-535 1-364 (364)
49 cd03816 GT1_ALG1_like This fam 100.0 2E-34 4.4E-39 300.6 35.8 370 57-528 4-409 (415)
50 cd03823 GT1_ExpE7_like This fa 100.0 1.3E-34 2.8E-39 295.0 33.6 358 58-536 1-359 (359)
51 cd03817 GT1_UGDG_like This fam 100.0 1.8E-34 3.9E-39 295.2 32.6 367 58-537 1-374 (374)
52 cd03794 GT1_wbuB_like This fam 100.0 1.6E-34 3.4E-39 297.0 32.1 382 58-528 1-392 (394)
53 PLN02949 transferase, transfer 100.0 1.8E-33 3.8E-38 294.2 38.9 230 265-539 216-459 (463)
54 cd03809 GT1_mtfB_like This fam 100.0 1.1E-34 2.3E-39 296.8 27.4 358 58-529 1-363 (365)
55 cd03801 GT1_YqgM_like This fam 100.0 3.3E-33 7.1E-38 284.2 37.4 368 58-535 1-374 (374)
56 cd03820 GT1_amsD_like This fam 100.0 3E-33 6.6E-38 282.7 33.3 339 58-528 1-345 (348)
57 cd03798 GT1_wlbH_like This fam 100.0 1.3E-32 2.9E-37 280.6 35.6 370 59-537 1-377 (377)
58 cd03793 GT1_Glycogen_synthase_ 100.0 4E-33 8.8E-38 287.7 29.3 432 71-538 14-588 (590)
59 cd03806 GT1_ALG11_like This fa 100.0 1E-32 2.2E-37 287.6 32.7 383 65-527 5-418 (419)
60 cd03808 GT1_cap1E_like This fa 100.0 3.8E-32 8.1E-37 275.9 35.4 351 58-529 1-357 (359)
61 TIGR03087 stp1 sugar transfera 100.0 9.4E-33 2E-37 287.1 23.0 381 59-536 1-396 (397)
62 TIGR02918 accessory Sec system 100.0 9.4E-32 2E-36 283.8 27.1 279 183-537 209-500 (500)
63 cd03811 GT1_WabH_like This fam 100.0 4.1E-31 8.9E-36 267.3 30.8 337 58-516 1-344 (353)
64 PLN02501 digalactosyldiacylgly 100.0 5.6E-31 1.2E-35 274.1 29.1 206 270-533 499-706 (794)
65 PLN02275 transferase, transfer 100.0 2.3E-30 5E-35 266.3 30.9 327 73-502 15-371 (371)
66 cd04946 GT1_AmsK_like This fam 100.0 8.6E-31 1.9E-35 272.6 27.1 220 261-529 175-405 (407)
67 cd03804 GT1_wbaZ_like This fam 100.0 1.4E-30 3E-35 266.4 24.2 204 262-529 146-350 (351)
68 PHA01630 putative group 1 glyc 100.0 2.7E-30 5.9E-35 259.6 22.7 215 267-536 92-330 (331)
69 PHA01633 putative glycosyl tra 100.0 8.4E-29 1.8E-33 246.0 30.6 223 265-531 88-334 (335)
70 cd04949 GT1_gtfA_like This fam 100.0 1.1E-28 2.4E-33 254.4 24.3 212 266-528 154-371 (372)
71 PRK00726 murG undecaprenyldiph 100.0 1.6E-26 3.6E-31 236.9 31.4 340 57-533 2-354 (357)
72 cd03788 GT1_TPS Trehalose-6-Ph 100.0 3E-27 6.5E-32 248.6 25.9 308 168-529 114-455 (460)
73 cd03785 GT1_MurG MurG is an N- 100.0 4.1E-26 8.9E-31 233.2 30.6 334 58-526 1-348 (350)
74 TIGR02400 trehalose_OtsA alpha 99.9 5.7E-26 1.2E-30 237.0 26.8 305 171-532 113-452 (456)
75 TIGR01133 murG undecaprenyldip 99.9 3.8E-25 8.2E-30 226.0 29.9 323 57-517 1-334 (348)
76 PRK13609 diacylglycerol glucos 99.9 4.5E-25 9.7E-30 228.2 30.3 364 55-540 3-375 (380)
77 PRK05749 3-deoxy-D-manno-octul 99.9 2E-23 4.3E-28 219.1 27.1 289 176-537 117-420 (425)
78 PLN03063 alpha,alpha-trehalose 99.9 2.4E-23 5.1E-28 230.3 27.0 309 172-538 134-479 (797)
79 KOG0853 Glycosyltransferase [C 99.9 4.1E-23 8.9E-28 209.6 23.8 415 35-534 13-465 (495)
80 PRK14501 putative bifunctional 99.9 2.5E-23 5.4E-28 230.6 24.3 309 172-537 120-463 (726)
81 PF00534 Glycos_transf_1: Glyc 99.9 2E-23 4.3E-28 191.0 18.8 166 340-517 2-171 (172)
82 PLN02605 monogalactosyldiacylg 99.9 1.9E-22 4.1E-27 208.4 27.0 271 173-529 90-375 (382)
83 PRK13608 diacylglycerol glucos 99.9 7.7E-22 1.7E-26 204.3 23.6 225 268-538 146-373 (391)
84 cd04950 GT1_like_1 Glycosyltra 99.9 3.1E-21 6.7E-26 198.8 27.8 265 182-534 99-369 (373)
85 cd01635 Glycosyltransferase_GT 99.9 1.6E-20 3.5E-25 178.6 24.8 110 360-474 109-222 (229)
86 PRK00025 lpxB lipid-A-disaccha 99.8 6.3E-19 1.4E-23 182.3 26.5 202 266-515 131-352 (380)
87 TIGR00236 wecB UDP-N-acetylglu 99.8 3E-19 6.6E-24 183.6 23.5 275 173-529 76-361 (365)
88 TIGR02398 gluc_glyc_Psyn gluco 99.8 1.2E-18 2.7E-23 180.9 28.0 300 172-528 119-475 (487)
89 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 4.4E-18 9.4E-23 174.9 27.4 272 173-528 78-357 (363)
90 PF05693 Glycogen_syn: Glycoge 99.8 5.3E-18 1.1E-22 174.7 19.4 422 71-537 9-582 (633)
91 COG0438 RfaG Glycosyltransfera 99.8 1.5E-17 3.2E-22 167.5 21.7 222 270-538 151-378 (381)
92 PRK09814 beta-1,6-galactofuran 99.8 2.5E-16 5.5E-21 159.5 26.6 235 184-517 62-311 (333)
93 PLN03064 alpha,alpha-trehalose 99.8 2.8E-16 6.2E-21 173.3 28.4 304 172-529 218-555 (934)
94 KOG1387 Glycosyltransferase [C 99.7 2.9E-14 6.4E-19 135.7 25.8 227 265-537 218-459 (465)
95 TIGR00215 lpxB lipid-A-disacch 99.7 3.9E-14 8.5E-19 146.1 26.3 260 174-515 80-362 (385)
96 PF13692 Glyco_trans_1_4: Glyc 99.6 2.2E-14 4.8E-19 125.4 11.8 130 355-504 2-135 (135)
97 PF13579 Glyco_trans_4_4: Glyc 99.6 1.6E-14 3.5E-19 129.4 9.9 160 73-310 1-160 (160)
98 PF13439 Glyco_transf_4: Glyco 99.5 7.2E-14 1.6E-18 127.4 11.9 177 59-317 1-177 (177)
99 TIGR03713 acc_sec_asp1 accesso 99.5 5.9E-13 1.3E-17 141.0 17.6 163 356-533 320-518 (519)
100 KOG2941 Beta-1,4-mannosyltrans 99.4 6.2E-10 1.4E-14 106.7 27.9 299 183-528 101-434 (444)
101 PRK12446 undecaprenyldiphospho 99.3 4.4E-09 9.4E-14 107.2 29.0 334 57-529 1-345 (352)
102 PF00982 Glyco_transf_20: Glyc 99.2 1.7E-09 3.6E-14 113.2 23.1 304 172-528 128-467 (474)
103 PRK10117 trehalose-6-phosphate 99.2 5.7E-09 1.2E-13 108.0 25.8 299 172-528 110-446 (474)
104 COG0058 GlgP Glucan phosphoryl 99.2 3E-09 6.6E-14 113.8 24.3 419 59-490 97-632 (750)
105 PF13524 Glyco_trans_1_2: Glyc 99.2 4.2E-11 9.1E-16 97.1 8.0 87 434-529 1-90 (92)
106 COG0707 MurG UDP-N-acetylgluco 99.2 7.5E-08 1.6E-12 97.3 33.0 326 57-517 1-337 (357)
107 cd04300 GT1_Glycogen_Phosphory 99.2 1.1E-08 2.4E-13 111.0 27.6 282 185-474 300-671 (797)
108 PF09314 DUF1972: Domain of un 99.2 7.8E-10 1.7E-14 100.1 15.4 179 58-312 3-185 (185)
109 PLN02205 alpha,alpha-trehalose 99.1 1.6E-08 3.5E-13 113.0 25.9 265 187-505 203-518 (854)
110 PRK14985 maltodextrin phosphor 99.1 1.7E-08 3.6E-13 109.1 24.1 281 185-473 302-669 (798)
111 PRK14986 glycogen phosphorylas 99.1 3.1E-08 6.8E-13 107.4 25.9 218 259-486 420-693 (815)
112 TIGR02093 P_ylase glycogen/sta 99.1 1.3E-08 2.9E-13 110.0 22.9 283 185-474 297-668 (794)
113 TIGR02919 accessory Sec system 99.1 2.5E-09 5.5E-14 110.9 16.9 127 371-512 291-419 (438)
114 COG0380 OtsA Trehalose-6-phosp 99.1 2E-07 4.3E-12 96.2 29.2 308 166-528 128-472 (486)
115 PF13477 Glyco_trans_4_2: Glyc 98.9 2.6E-08 5.6E-13 87.3 14.8 137 58-277 1-139 (139)
116 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 2.5E-06 5.5E-11 87.4 26.2 271 173-529 83-361 (365)
117 KOG3742 Glycogen synthase [Car 98.8 2.3E-08 4.9E-13 98.8 9.8 309 187-533 176-609 (692)
118 PF00343 Phosphorylase: Carboh 98.7 2.9E-06 6.3E-11 91.2 21.2 210 258-474 320-585 (713)
119 TIGR03492 conserved hypothetic 98.6 1.9E-05 4.2E-10 81.8 25.2 151 366-528 219-391 (396)
120 cd03784 GT1_Gtf_like This fami 98.6 2.2E-05 4.8E-10 81.8 25.2 130 355-512 240-379 (401)
121 PF13844 Glyco_transf_41: Glyc 98.5 4.1E-06 9E-11 86.6 16.5 182 344-537 276-467 (468)
122 PF13528 Glyco_trans_1_3: Glyc 98.4 4.5E-05 9.8E-10 76.8 21.2 121 355-501 193-317 (318)
123 TIGR03590 PseG pseudaminic aci 98.4 0.00033 7.1E-09 69.1 25.9 96 356-463 172-268 (279)
124 COG0763 LpxB Lipid A disacchar 98.4 0.00037 8.1E-09 69.5 25.7 162 339-514 174-354 (381)
125 PF00862 Sucrose_synth: Sucros 98.3 1E-05 2.3E-10 82.5 12.6 209 28-285 248-481 (550)
126 PF02684 LpxB: Lipid-A-disacch 98.2 0.00077 1.7E-08 68.6 25.9 155 341-511 173-347 (373)
127 PF04007 DUF354: Protein of un 98.2 0.00083 1.8E-08 67.4 24.6 299 57-501 1-307 (335)
128 PRK01021 lpxB lipid-A-disaccha 98.2 0.0013 2.8E-08 70.1 26.3 159 340-515 400-582 (608)
129 PF02350 Epimerase_2: UDP-N-ac 98.1 0.00017 3.7E-09 73.3 17.8 143 368-529 197-341 (346)
130 COG3914 Spy Predicted O-linked 98.1 0.00018 4E-09 74.5 17.8 180 344-538 421-615 (620)
131 TIGR00661 MJ1255 conserved hyp 98.0 0.0011 2.5E-08 66.8 22.2 85 412-505 229-315 (321)
132 COG1819 Glycosyl transferases, 97.9 0.0029 6.2E-08 65.8 22.8 156 354-535 237-400 (406)
133 COG1519 KdtA 3-deoxy-D-manno-o 97.9 0.0018 3.9E-08 65.4 20.3 213 261-517 169-399 (419)
134 PHA03392 egt ecdysteroid UDP-g 97.7 0.0094 2E-07 63.8 23.5 133 356-513 298-441 (507)
135 PF12000 Glyco_trans_4_3: Gkyc 97.5 0.0018 4E-08 58.1 12.0 146 138-316 20-170 (171)
136 COG1817 Uncharacterized protei 97.4 0.15 3.2E-06 49.6 25.1 141 342-505 171-315 (346)
137 TIGR01426 MGT glycosyltransfer 97.3 0.0057 1.2E-07 63.5 15.2 155 355-528 226-385 (392)
138 COG0381 WecB UDP-N-acetylgluco 97.3 0.073 1.6E-06 53.6 21.8 147 363-529 214-364 (383)
139 PRK14089 ipid-A-disaccharide s 96.9 0.36 7.9E-06 48.9 23.4 77 370-462 185-261 (347)
140 COG4641 Uncharacterized protei 96.9 0.063 1.4E-06 53.6 17.0 178 301-528 160-354 (373)
141 PF11440 AGT: DNA alpha-glucos 96.1 1.5 3.1E-05 42.1 20.7 141 359-505 187-354 (355)
142 COG4671 Predicted glycosyl tra 95.8 2.3 5.1E-05 42.3 23.5 139 355-505 220-366 (400)
143 PF11997 DUF3492: Domain of un 95.6 0.15 3.1E-06 49.8 11.6 42 57-99 1-42 (268)
144 PF08288 PIGA: PIGA (GPI ancho 95.3 0.05 1.1E-06 42.4 5.6 38 183-224 48-85 (90)
145 KOG1050 Trehalose-6-phosphate 95.2 2.3 5E-05 47.2 20.2 186 301-511 238-447 (732)
146 TIGR02195 heptsyl_trn_II lipop 94.8 0.59 1.3E-05 47.2 13.6 114 339-462 160-277 (334)
147 PRK02797 4-alpha-L-fucosyltran 94.5 1 2.2E-05 44.3 13.5 164 357-537 147-317 (322)
148 PF07429 Glyco_transf_56: 4-al 94.3 0.65 1.4E-05 46.2 12.0 105 358-463 187-297 (360)
149 PRK10422 lipopolysaccharide co 94.1 0.97 2.1E-05 46.1 13.5 101 356-462 185-288 (352)
150 PF04101 Glyco_tran_28_C: Glyc 93.5 0.045 9.7E-07 49.3 2.2 94 412-514 55-154 (167)
151 COG3660 Predicted nucleoside-d 93.4 7.5 0.00016 37.2 22.0 104 354-463 161-273 (329)
152 PF06258 Mito_fiss_Elm1: Mitoc 93.3 4.6 9.9E-05 40.4 16.3 87 372-463 169-257 (311)
153 PF04464 Glyphos_transf: CDP-G 93.3 2.2 4.7E-05 43.8 14.5 216 264-529 129-363 (369)
154 TIGR02201 heptsyl_trn_III lipo 93.1 1.7 3.6E-05 44.2 13.2 101 356-462 183-286 (344)
155 PLN02448 UDP-glycosyltransfera 92.7 1.8 3.8E-05 46.0 13.0 130 355-505 275-416 (459)
156 PF10087 DUF2325: Uncharacteri 92.5 0.33 7.1E-06 39.3 5.6 74 387-463 2-83 (97)
157 cd03789 GT1_LPS_heptosyltransf 91.9 1.6 3.5E-05 42.8 10.9 89 366-462 135-224 (279)
158 PF01075 Glyco_transf_9: Glyco 91.8 1.1 2.4E-05 42.9 9.6 102 355-462 106-209 (247)
159 PRK10017 colanic acid biosynth 91.8 9.3 0.0002 40.0 16.9 134 372-515 261-403 (426)
160 PRK10916 ADP-heptose:LPS hepto 91.7 3.6 7.9E-05 41.8 13.7 114 340-462 167-287 (348)
161 COG0859 RfaF ADP-heptose:LPS h 91.6 1.7 3.7E-05 44.0 11.0 98 356-462 177-277 (334)
162 TIGR02193 heptsyl_trn_I lipopo 90.7 3.3 7.2E-05 41.4 12.1 98 356-462 181-280 (319)
163 PLN02562 UDP-glycosyltransfera 90.0 4.3 9.4E-05 42.9 12.6 142 356-511 275-420 (448)
164 PRK10964 ADP-heptose:LPS hepto 89.2 4.2 9.1E-05 40.8 11.4 85 369-462 195-279 (322)
165 PLN03004 UDP-glycosyltransfera 86.4 15 0.00033 38.8 13.8 144 356-510 272-430 (451)
166 PLN02410 UDP-glucoronosyl/UDP- 86.0 9 0.0002 40.5 11.9 136 355-506 265-412 (451)
167 PLN02210 UDP-glucosyl transfer 86.0 14 0.00031 39.0 13.5 134 355-506 270-417 (456)
168 PLN03007 UDP-glucosyltransfera 85.9 17 0.00037 38.8 14.2 135 355-505 286-441 (482)
169 PF01975 SurE: Survival protei 85.7 0.94 2E-05 41.9 3.9 39 57-102 1-39 (196)
170 COG3980 spsG Spore coat polysa 85.5 11 0.00024 36.6 10.9 138 356-514 160-303 (318)
171 PF02951 GSH-S_N: Prokaryotic 85.5 1.2 2.5E-05 37.6 4.0 41 57-100 1-41 (119)
172 PF12038 DUF3524: Domain of un 85.1 14 0.00031 32.9 10.6 34 57-98 1-34 (168)
173 KOG4626 O-linked N-acetylgluco 84.7 9 0.0002 41.1 10.7 183 343-537 749-941 (966)
174 TIGR03609 S_layer_CsaB polysac 82.3 18 0.0004 35.7 11.8 87 370-463 190-277 (298)
175 PF03033 Glyco_transf_28: Glyc 81.4 2.6 5.5E-05 36.2 4.7 27 73-99 9-35 (139)
176 COG0052 RpsB Ribosomal protein 80.9 17 0.00038 34.5 10.1 38 432-473 157-196 (252)
177 PLN02555 limonoid glucosyltran 79.9 47 0.001 35.4 14.4 143 356-515 279-439 (480)
178 PLN02670 transferase, transfer 79.4 64 0.0014 34.3 15.2 133 355-505 279-430 (472)
179 PF00201 UDPGT: UDP-glucoronos 79.1 20 0.00044 38.3 11.7 136 354-513 276-418 (500)
180 PLN02208 glycosyltransferase f 78.8 29 0.00063 36.6 12.4 147 355-515 252-413 (442)
181 PRK04020 rps2P 30S ribosomal p 78.7 27 0.00058 32.5 10.5 102 365-473 47-154 (204)
182 COG2327 WcaK Polysaccharide py 78.7 60 0.0013 33.3 13.9 102 399-510 252-357 (385)
183 PF05159 Capsule_synth: Capsul 78.4 18 0.00039 35.1 10.2 96 355-461 117-224 (269)
184 PLN02167 UDP-glycosyltransfera 76.1 41 0.00088 35.9 12.7 137 355-505 281-435 (475)
185 PLN02554 UDP-glycosyltransfera 75.7 40 0.00087 36.0 12.6 87 412-510 342-447 (481)
186 TIGR01012 Sa_S2_E_A ribosomal 75.5 44 0.00095 30.8 10.9 100 368-473 44-148 (196)
187 COG2910 Putative NADH-flavin r 75.3 5.1 0.00011 36.3 4.6 35 57-101 1-35 (211)
188 TIGR03029 EpsG chain length de 74.6 19 0.00041 35.1 9.2 40 54-97 100-139 (274)
189 PLN02764 glycosyltransferase f 73.7 48 0.0011 35.0 12.3 156 343-515 247-419 (453)
190 PLN02863 UDP-glucoronosyl/UDP- 73.1 51 0.0011 35.2 12.5 44 51-100 4-47 (477)
191 PLN02173 UDP-glucosyl transfer 72.7 60 0.0013 34.3 12.7 133 356-506 266-410 (449)
192 PRK13398 3-deoxy-7-phosphohept 72.7 63 0.0014 31.5 12.0 102 357-462 28-141 (266)
193 PLN02207 UDP-glycosyltransfera 72.5 1.3E+02 0.0027 32.1 15.1 147 343-503 265-425 (468)
194 PRK08305 spoVFB dipicolinate s 70.8 11 0.00023 34.9 5.8 37 55-99 4-42 (196)
195 PLN00414 glycosyltransferase f 70.3 54 0.0012 34.7 11.8 156 343-515 242-414 (446)
196 PF03401 TctC: Tripartite tric 68.8 75 0.0016 31.0 11.8 153 356-521 79-249 (274)
197 PRK00207 sulfur transfer compl 68.1 13 0.00027 31.8 5.4 39 57-98 1-40 (128)
198 TIGR01007 eps_fam capsular exo 68.1 8.5 0.00018 35.7 4.8 37 57-97 17-53 (204)
199 PLN00164 glucosyltransferase; 68.0 1E+02 0.0022 32.9 13.4 80 414-505 341-432 (480)
200 PF01113 DapB_N: Dihydrodipico 67.9 8.5 0.00018 32.6 4.3 44 425-470 61-104 (124)
201 PF03358 FMN_red: NADPH-depend 67.7 12 0.00025 32.8 5.4 40 57-99 1-40 (152)
202 PF03808 Glyco_tran_WecB: Glyc 67.4 53 0.0012 29.5 9.7 98 368-473 32-141 (172)
203 KOG0780 Signal recognition par 67.2 1.6E+02 0.0034 30.3 16.1 165 360-534 159-340 (483)
204 PLN02152 indole-3-acetate beta 66.8 88 0.0019 33.1 12.5 91 405-506 321-419 (455)
205 COG4635 HemG Flavodoxin [Energ 66.4 11 0.00024 33.2 4.6 36 57-97 1-36 (175)
206 PLN02166 dTDP-glucose 4,6-dehy 65.8 8.1 0.00018 40.7 4.6 36 53-98 117-152 (436)
207 PF03016 Exostosin: Exostosin 65.5 9.1 0.0002 37.8 4.7 40 423-462 228-267 (302)
208 PTZ00254 40S ribosomal protein 64.6 52 0.0011 31.6 9.2 103 365-473 50-158 (249)
209 PRK10037 cell division protein 64.5 8.8 0.00019 37.0 4.2 34 57-96 1-36 (250)
210 PLN00016 RNA-binding protein; 64.2 6.9 0.00015 40.3 3.7 40 54-99 50-89 (378)
211 PF06925 MGDG_synth: Monogalac 64.2 37 0.00079 30.4 8.0 18 269-286 137-154 (169)
212 PLN02534 UDP-glycosyltransfera 64.0 1.1E+02 0.0024 32.8 12.6 100 356-463 285-390 (491)
213 COG2204 AtoC Response regulato 63.9 83 0.0018 33.2 11.3 114 386-507 6-125 (464)
214 PRK09271 flavodoxin; Provision 63.3 15 0.00033 32.6 5.3 36 57-97 1-36 (160)
215 PRK10840 transcriptional regul 62.6 80 0.0017 29.2 10.4 113 384-503 3-125 (216)
216 PF06564 YhjQ: YhjQ protein; 61.4 15 0.00032 35.2 5.0 35 57-97 1-37 (243)
217 PRK06249 2-dehydropantoate 2-r 60.9 14 0.0003 36.9 5.1 36 53-99 2-37 (313)
218 COG1703 ArgK Putative periplas 59.7 1.9E+02 0.0041 28.7 15.5 36 58-98 52-87 (323)
219 TIGR01915 npdG NADPH-dependent 59.1 13 0.00027 35.0 4.2 32 57-98 1-32 (219)
220 PF09949 DUF2183: Uncharacteri 58.3 29 0.00062 28.2 5.5 31 383-415 63-93 (100)
221 PF02441 Flavoprotein: Flavopr 58.3 14 0.0003 31.5 3.9 36 57-99 1-36 (129)
222 PRK13932 stationary phase surv 57.6 15 0.00033 35.4 4.4 40 55-102 4-43 (257)
223 COG0569 TrkA K+ transport syst 57.1 13 0.00027 35.3 3.8 26 74-99 7-32 (225)
224 PRK09739 hypothetical protein; 56.8 27 0.00059 32.2 5.9 40 56-98 3-42 (199)
225 PRK06756 flavodoxin; Provision 56.7 23 0.0005 30.8 5.2 37 57-98 2-38 (148)
226 PF02525 Flavodoxin_2: Flavodo 55.7 21 0.00046 32.8 5.0 39 57-97 1-40 (199)
227 COG2102 Predicted ATPases of P 55.3 68 0.0015 30.1 8.0 87 356-445 61-149 (223)
228 PLN02992 coniferyl-alcohol glu 54.6 2.4E+02 0.0051 30.2 13.2 82 412-505 338-428 (481)
229 TIGR00087 surE 5'/3'-nucleotid 54.3 17 0.00036 34.9 4.1 38 57-102 1-38 (244)
230 COG1763 MobB Molybdopterin-gua 53.9 27 0.00058 31.2 5.0 38 56-98 1-38 (161)
231 PRK05920 aromatic acid decarbo 53.3 29 0.00064 32.2 5.4 39 55-100 2-40 (204)
232 cd01425 RPS2 Ribosomal protein 52.9 1.2E+02 0.0027 27.8 9.5 89 370-461 39-156 (193)
233 PLN02778 3,5-epimerase/4-reduc 52.4 22 0.00047 35.2 4.8 35 52-96 5-39 (298)
234 TIGR01380 glut_syn glutathione 51.5 16 0.00034 36.6 3.6 41 57-100 1-41 (312)
235 KOG0832 Mitochondrial/chloropl 51.3 2.2E+02 0.0047 26.9 10.7 38 433-473 175-213 (251)
236 TIGR03018 pepcterm_TyrKin exop 51.2 78 0.0017 29.3 8.1 41 53-97 31-72 (207)
237 KOG1429 dTDP-glucose 4-6-dehyd 50.8 25 0.00054 34.3 4.5 36 54-99 25-60 (350)
238 PLN02206 UDP-glucuronate decar 50.7 23 0.00049 37.4 4.8 36 52-97 115-150 (442)
239 CHL00194 ycf39 Ycf39; Provisio 49.8 21 0.00045 35.7 4.2 27 73-99 7-33 (317)
240 PF02374 ArsA_ATPase: Anion-tr 49.6 19 0.00041 35.9 3.8 36 57-99 1-38 (305)
241 PF00072 Response_reg: Respons 49.6 1.1E+02 0.0025 24.2 8.1 99 396-499 8-112 (112)
242 PF02606 LpxK: Tetraacyldisacc 49.2 27 0.00059 35.1 4.9 48 51-103 29-78 (326)
243 TIGR01754 flav_RNR ribonucleot 48.8 33 0.00072 29.6 4.8 35 57-96 1-35 (140)
244 COG0300 DltE Short-chain dehyd 48.7 34 0.00073 33.2 5.2 35 56-99 5-39 (265)
245 TIGR03815 CpaE_hom_Actino heli 48.4 40 0.00088 33.7 6.1 54 36-96 73-128 (322)
246 PRK13397 3-deoxy-7-phosphohept 48.2 2.2E+02 0.0047 27.4 10.5 89 370-462 28-129 (250)
247 TIGR00696 wecB_tagA_cpsF bacte 47.7 1E+02 0.0023 27.9 8.0 99 369-473 33-140 (177)
248 PRK06719 precorrin-2 dehydroge 47.6 25 0.00055 31.1 4.0 24 76-99 22-45 (157)
249 PRK10360 DNA-binding transcrip 47.3 2.1E+02 0.0045 25.4 11.5 70 431-503 47-117 (196)
250 PRK11104 hemG protoporphyrinog 47.1 28 0.00062 31.5 4.3 36 57-98 1-36 (177)
251 PF00201 UDPGT: UDP-glucoronos 47.0 8.6 0.00019 41.2 1.0 28 73-100 10-37 (500)
252 PRK13396 3-deoxy-7-phosphohept 46.8 3.3E+02 0.0072 27.7 12.5 103 356-462 101-215 (352)
253 PRK13849 putative crown gall t 46.7 30 0.00065 32.9 4.5 35 57-97 1-37 (231)
254 PRK05299 rpsB 30S ribosomal pr 46.6 2.8E+02 0.0061 26.8 13.4 39 431-473 157-197 (258)
255 PHA02519 plasmid partition pro 46.1 44 0.00095 34.6 6.0 39 53-97 102-142 (387)
256 PRK13933 stationary phase surv 45.8 26 0.00056 33.8 3.9 38 57-102 1-38 (253)
257 PLN02695 GDP-D-mannose-3',5'-e 45.7 31 0.00068 35.3 4.9 34 55-98 20-53 (370)
258 TIGR00715 precor6x_red precorr 45.3 34 0.00074 33.1 4.7 31 57-98 1-31 (256)
259 PF08660 Alg14: Oligosaccharid 45.2 2.3E+02 0.005 25.4 11.8 37 184-220 91-127 (170)
260 PRK13705 plasmid-partitioning 45.2 49 0.0011 34.3 6.1 37 54-96 103-141 (388)
261 PRK05647 purN phosphoribosylgl 44.9 91 0.002 28.9 7.3 35 57-100 2-38 (200)
262 PRK13935 stationary phase surv 44.8 27 0.00059 33.6 3.9 38 57-102 1-38 (253)
263 COG1553 DsrE Uncharacterized c 44.7 66 0.0014 27.1 5.6 40 57-99 1-41 (126)
264 PRK14619 NAD(P)H-dependent gly 44.7 36 0.00078 33.9 5.0 35 54-99 2-36 (308)
265 TIGR00682 lpxK tetraacyldisacc 44.6 42 0.0009 33.5 5.3 45 53-102 24-70 (311)
266 COG0716 FldA Flavodoxins [Ener 44.4 40 0.00088 29.5 4.7 37 56-97 1-37 (151)
267 PF04230 PS_pyruv_trans: Polys 44.4 1.7E+02 0.0037 27.5 9.8 40 419-463 245-284 (286)
268 PRK01906 tetraacyldisaccharide 44.3 38 0.00082 34.3 5.0 47 51-102 50-98 (338)
269 COG0496 SurE Predicted acid ph 44.1 28 0.00061 33.4 3.8 38 57-102 1-38 (252)
270 PRK13234 nifH nitrogenase redu 44.0 35 0.00077 33.7 4.8 36 55-97 2-39 (295)
271 PF10093 DUF2331: Uncharacteri 43.4 2.3E+02 0.0051 29.0 10.4 113 337-461 165-288 (374)
272 PRK13934 stationary phase surv 43.1 30 0.00064 33.6 3.9 38 57-102 1-38 (266)
273 CHL00072 chlL photochlorophyll 42.9 28 0.0006 34.4 3.8 33 57-97 1-35 (290)
274 COG1090 Predicted nucleoside-d 42.9 22 0.00049 34.5 2.9 30 72-101 4-33 (297)
275 cd02040 NifH NifH gene encodes 41.9 33 0.00072 33.2 4.2 34 57-97 1-36 (270)
276 PRK00346 surE 5'(3')-nucleotid 41.6 34 0.00073 33.0 4.0 38 57-102 1-38 (250)
277 TIGR03453 partition_RepA plasm 41.6 39 0.00085 34.9 4.8 38 54-97 101-140 (387)
278 PRK06703 flavodoxin; Provision 41.4 54 0.0012 28.6 5.1 37 57-98 2-38 (151)
279 COG4088 Predicted nucleotide k 41.3 28 0.0006 32.4 3.1 39 57-100 1-39 (261)
280 CHL00175 minD septum-site dete 41.0 43 0.00093 32.7 4.8 34 57-96 15-50 (281)
281 TIGR00639 PurN phosphoribosylg 40.7 1.6E+02 0.0035 27.0 8.2 35 57-100 1-37 (190)
282 PRK13869 plasmid-partitioning 40.6 40 0.00087 35.1 4.7 35 56-96 120-156 (405)
283 PRK12311 rpsB 30S ribosomal pr 40.5 4E+02 0.0086 26.8 13.3 38 432-473 153-192 (326)
284 PRK05723 flavodoxin; Provision 40.5 50 0.0011 29.0 4.7 36 57-97 1-36 (151)
285 PRK05693 short chain dehydroge 40.4 42 0.0009 32.5 4.7 33 57-98 1-33 (274)
286 PLN02572 UDP-sulfoquinovose sy 40.4 40 0.00086 35.6 4.7 38 50-97 41-78 (442)
287 PRK04155 chaperone protein Hch 40.4 64 0.0014 31.8 5.8 47 54-100 47-100 (287)
288 KOG2099 Glycogen phosphorylase 40.2 25 0.00053 37.4 3.0 126 343-473 551-703 (843)
289 PF15024 Glyco_transf_18: Glyc 40.0 69 0.0015 34.4 6.3 142 367-529 290-449 (559)
290 TIGR01968 minD_bact septum sit 40.0 39 0.00084 32.3 4.3 34 58-97 2-37 (261)
291 COG2894 MinD Septum formation 39.5 39 0.00085 31.7 3.8 38 58-101 3-42 (272)
292 PRK09004 FMN-binding protein M 39.3 57 0.0012 28.4 4.9 27 71-97 11-37 (146)
293 PRK05246 glutathione synthetas 39.2 29 0.00063 34.7 3.4 41 57-100 2-42 (316)
294 cd03129 GAT1_Peptidase_E_like 39.2 3E+02 0.0065 25.4 10.1 81 383-463 28-122 (210)
295 PRK06935 2-deoxy-D-gluconate 3 39.1 47 0.001 31.7 4.7 47 44-99 2-48 (258)
296 COG2085 Predicted dinucleotide 39.1 37 0.0008 31.6 3.7 29 73-101 7-35 (211)
297 PLN02427 UDP-apiose/xylose syn 39.0 45 0.00098 34.3 4.9 38 50-97 8-46 (386)
298 COG4565 CitB Response regulato 39.0 2.2E+02 0.0047 26.7 8.5 23 480-502 96-118 (224)
299 PRK07454 short chain dehydroge 38.9 47 0.001 31.3 4.6 34 56-98 5-38 (241)
300 COG3980 spsG Spore coat polysa 38.7 53 0.0011 32.1 4.7 39 57-97 1-39 (318)
301 PRK05718 keto-hydroxyglutarate 38.7 3.3E+02 0.0073 25.4 10.6 86 369-459 25-112 (212)
302 PLN03007 UDP-glucosyltransfera 38.3 52 0.0011 35.1 5.3 40 54-99 3-42 (482)
303 PRK10427 putative PTS system f 38.0 73 0.0016 26.6 5.0 39 57-100 3-43 (114)
304 COG0111 SerA Phosphoglycerate 37.8 1.2E+02 0.0027 30.4 7.5 45 423-469 189-238 (324)
305 TIGR00670 asp_carb_tr aspartat 37.8 4.2E+02 0.009 26.3 11.2 106 307-440 120-225 (301)
306 TIGR01281 DPOR_bchL light-inde 37.7 38 0.00083 32.8 3.9 24 73-96 9-34 (268)
307 PRK05708 2-dehydropantoate 2-r 37.7 46 0.00099 33.1 4.5 33 56-99 2-34 (305)
308 PRK07313 phosphopantothenoylcy 37.6 67 0.0014 29.3 5.1 35 57-99 2-37 (182)
309 PLN02686 cinnamoyl-CoA reducta 37.1 89 0.0019 31.9 6.6 26 73-98 60-85 (367)
310 PLN02208 glycosyltransferase f 36.8 59 0.0013 34.3 5.3 40 54-99 2-41 (442)
311 PRK13185 chlL protochlorophyll 36.6 44 0.00095 32.4 4.1 33 58-97 3-37 (270)
312 PRK00170 azoreductase; Reviewe 36.5 69 0.0015 29.3 5.3 39 57-98 2-43 (201)
313 COG0655 WrbA Multimeric flavod 36.5 73 0.0016 29.6 5.4 40 57-99 1-40 (207)
314 PF03446 NAD_binding_2: NAD bi 36.2 52 0.0011 29.2 4.2 24 74-97 8-31 (163)
315 cd01452 VWA_26S_proteasome_sub 36.0 1.5E+02 0.0033 27.1 7.2 60 356-417 109-170 (187)
316 TIGR02852 spore_dpaB dipicolin 36.0 75 0.0016 29.1 5.1 29 72-100 8-38 (187)
317 PRK10675 UDP-galactose-4-epime 35.6 41 0.00088 33.7 3.8 25 73-97 7-31 (338)
318 TIGR00421 ubiX_pad polyprenyl 35.6 72 0.0015 29.1 5.0 27 73-99 8-35 (181)
319 PRK02255 putrescine carbamoylt 35.5 3.6E+02 0.0078 27.3 10.4 89 342-441 141-232 (338)
320 PRK13232 nifH nitrogenase redu 35.5 44 0.00096 32.5 3.9 33 57-96 1-35 (273)
321 COG0426 FpaA Uncharacterized f 35.5 95 0.0021 31.9 6.2 63 32-101 224-286 (388)
322 PRK11921 metallo-beta-lactamas 35.5 56 0.0012 33.9 4.8 67 25-98 218-286 (394)
323 PF02826 2-Hacid_dh_C: D-isome 35.4 1.8E+02 0.0039 26.1 7.7 36 425-460 85-125 (178)
324 PRK12595 bifunctional 3-deoxy- 35.3 3.6E+02 0.0079 27.5 10.5 90 370-462 131-232 (360)
325 PRK06522 2-dehydropantoate 2-r 35.2 46 0.001 32.8 4.1 32 57-99 1-32 (304)
326 PRK12921 2-dehydropantoate 2-r 35.1 42 0.00091 33.1 3.8 31 57-98 1-31 (305)
327 PRK06101 short chain dehydroge 34.9 60 0.0013 30.6 4.7 33 57-98 1-33 (240)
328 PRK05579 bifunctional phosphop 34.9 81 0.0018 32.7 5.9 21 78-98 216-236 (399)
329 COG1830 FbaB DhnA-type fructos 34.6 3.2E+02 0.0069 26.5 9.2 121 356-504 115-259 (265)
330 PRK07308 flavodoxin; Validated 34.5 69 0.0015 27.7 4.6 27 71-97 11-37 (146)
331 PLN02657 3,8-divinyl protochlo 34.3 66 0.0014 33.3 5.1 36 54-99 58-93 (390)
332 COG0702 Predicted nucleoside-d 34.3 47 0.001 31.8 3.9 29 73-101 7-35 (275)
333 TIGR03371 cellulose_yhjQ cellu 34.2 71 0.0015 30.2 5.1 35 57-97 1-37 (246)
334 PRK06849 hypothetical protein; 34.2 59 0.0013 33.5 4.8 35 55-99 3-37 (389)
335 PRK13982 bifunctional SbtC-lik 33.8 1E+02 0.0022 32.7 6.4 59 39-97 236-303 (475)
336 TIGR03837 efp_adjacent_2 conse 33.6 4.3E+02 0.0093 27.0 10.4 113 336-460 163-285 (371)
337 PF01012 ETF: Electron transfe 33.6 1.6E+02 0.0035 25.9 7.0 88 372-461 19-120 (164)
338 PRK10538 malonic semialdehyde 33.5 62 0.0013 30.7 4.5 24 72-98 9-32 (248)
339 PRK06718 precorrin-2 dehydroge 33.3 60 0.0013 30.1 4.2 25 76-100 19-43 (202)
340 cd02032 Bchl_like This family 33.2 49 0.0011 32.0 3.8 25 73-97 9-35 (267)
341 PLN02662 cinnamyl-alcohol dehy 33.0 76 0.0016 31.4 5.3 26 73-98 11-36 (322)
342 COG1192 Soj ATPases involved i 32.8 69 0.0015 30.8 4.8 36 56-97 1-39 (259)
343 PRK13235 nifH nitrogenase redu 32.8 58 0.0013 31.7 4.3 34 57-97 1-36 (274)
344 PRK13236 nitrogenase reductase 32.8 64 0.0014 31.9 4.6 36 55-97 4-41 (296)
345 PRK09140 2-dehydro-3-deoxy-6-p 32.8 2.6E+02 0.0057 26.0 8.4 119 375-504 74-205 (206)
346 PRK08105 flavodoxin; Provision 32.7 74 0.0016 27.9 4.5 28 71-98 11-38 (149)
347 TIGR01969 minD_arch cell divis 32.5 56 0.0012 31.0 4.1 26 72-97 9-36 (251)
348 COG1440 CelA Phosphotransferas 32.5 2.7E+02 0.006 22.6 7.3 37 57-99 2-38 (102)
349 PF09140 MipZ: ATPase MipZ; I 32.2 79 0.0017 30.4 4.8 34 58-97 1-36 (261)
350 TIGR01426 MGT glycosyltransfer 32.2 36 0.00077 35.1 2.8 21 79-99 12-32 (392)
351 PRK14494 putative molybdopteri 32.1 90 0.002 29.6 5.2 38 57-99 1-38 (229)
352 PRK06732 phosphopantothenate-- 32.1 76 0.0016 30.1 4.8 25 71-98 24-48 (229)
353 PF00852 Glyco_transf_10: Glyc 31.9 77 0.0017 32.2 5.1 58 448-511 247-305 (349)
354 COG0003 ArsA Predicted ATPase 31.6 70 0.0015 32.1 4.6 36 56-98 1-38 (322)
355 PRK12827 short chain dehydroge 31.5 80 0.0017 29.6 5.0 33 56-98 6-38 (249)
356 PRK10569 NAD(P)H-dependent FMN 31.4 1.1E+02 0.0023 28.2 5.4 37 57-97 1-38 (191)
357 PRK05993 short chain dehydroge 31.3 79 0.0017 30.6 5.0 33 57-98 4-36 (277)
358 PRK08309 short chain dehydroge 31.3 77 0.0017 28.7 4.5 25 73-98 7-31 (177)
359 TIGR01425 SRP54_euk signal rec 31.2 6.4E+02 0.014 26.5 16.1 158 371-533 169-339 (429)
360 PF13460 NAD_binding_10: NADH( 31.1 42 0.00091 30.0 2.8 29 72-100 4-32 (183)
361 TIGR01361 DAHP_synth_Bsub phos 31.0 4.6E+02 0.0099 25.4 10.0 91 368-462 36-139 (260)
362 PRK08229 2-dehydropantoate 2-r 30.9 59 0.0013 32.7 4.1 32 56-98 2-33 (341)
363 KOG1209 1-Acyl dihydroxyaceton 30.8 87 0.0019 29.3 4.6 36 55-99 6-41 (289)
364 PLN00141 Tic62-NAD(P)-related 30.8 72 0.0016 30.4 4.5 34 55-98 16-49 (251)
365 PRK00652 lpxK tetraacyldisacch 30.7 84 0.0018 31.6 5.0 45 53-102 45-91 (325)
366 PRK13230 nitrogenase reductase 30.5 67 0.0014 31.3 4.3 33 57-96 1-35 (279)
367 PRK05568 flavodoxin; Provision 30.3 1.2E+02 0.0026 25.9 5.5 36 58-98 3-38 (142)
368 PLN03015 UDP-glucosyl transfer 30.3 6.9E+02 0.015 26.6 13.3 37 58-100 5-42 (470)
369 PF02635 DrsE: DsrE/DsrF-like 30.3 1.1E+02 0.0023 25.0 5.0 40 57-99 1-43 (122)
370 PF10727 Rossmann-like: Rossma 30.2 27 0.00058 29.8 1.2 34 54-98 8-41 (127)
371 PF01964 ThiC: ThiC family; I 30.1 4.5E+02 0.0097 27.2 9.8 89 372-463 243-347 (420)
372 PRK06180 short chain dehydroge 30.0 86 0.0019 30.3 5.0 24 72-98 13-36 (277)
373 COG2120 Uncharacterized protei 29.8 1.1E+02 0.0023 29.3 5.4 46 51-102 5-50 (237)
374 PRK07109 short chain dehydroge 29.7 98 0.0021 31.1 5.4 33 57-98 8-40 (334)
375 PRK01372 ddl D-alanine--D-alan 29.7 1E+02 0.0022 30.4 5.5 43 55-99 3-45 (304)
376 KOG1192 UDP-glucuronosyl and U 29.7 77 0.0017 33.7 5.0 30 72-101 15-44 (496)
377 PRK06029 3-octaprenyl-4-hydrox 29.7 1E+02 0.0022 28.2 4.9 35 57-99 2-38 (185)
378 PRK10446 ribosomal protein S6 29.6 61 0.0013 32.1 3.9 35 57-99 1-35 (300)
379 PF00070 Pyr_redox: Pyridine n 29.5 56 0.0012 24.8 2.9 26 76-101 8-33 (80)
380 PRK12823 benD 1,6-dihydroxycyc 29.4 92 0.002 29.6 5.0 32 58-98 9-40 (260)
381 PRK14618 NAD(P)H-dependent gly 29.4 67 0.0015 32.2 4.2 33 56-99 4-36 (328)
382 PLN00198 anthocyanidin reducta 29.4 93 0.002 31.1 5.3 26 73-98 16-41 (338)
383 PRK09730 putative NAD(P)-bindi 29.4 65 0.0014 30.3 3.9 32 57-97 1-32 (247)
384 PRK06924 short chain dehydroge 29.1 70 0.0015 30.2 4.1 33 57-98 1-33 (251)
385 PRK04148 hypothetical protein; 29.0 65 0.0014 27.7 3.3 31 55-97 16-46 (134)
386 TIGR02026 BchE magnesium-proto 29.0 3E+02 0.0065 29.5 9.2 35 58-96 1-43 (497)
387 COG1087 GalE UDP-glucose 4-epi 28.9 71 0.0015 31.6 3.9 26 72-97 6-31 (329)
388 COG2084 MmsB 3-hydroxyisobutyr 28.9 65 0.0014 31.7 3.7 25 74-98 7-31 (286)
389 PRK12939 short chain dehydroge 28.8 1E+02 0.0022 28.9 5.2 23 72-97 16-38 (250)
390 PRK07236 hypothetical protein; 28.5 71 0.0015 32.8 4.3 33 54-97 4-36 (386)
391 PLN02896 cinnamyl-alcohol dehy 28.5 79 0.0017 32.0 4.5 35 54-98 8-42 (353)
392 PRK09496 trkA potassium transp 28.4 1.1E+02 0.0023 32.3 5.7 47 42-99 217-263 (453)
393 TIGR00288 conserved hypothetic 28.3 2.6E+02 0.0057 24.9 7.1 65 368-438 89-155 (160)
394 PRK07806 short chain dehydroge 28.2 1.1E+02 0.0024 28.8 5.3 24 72-98 15-38 (248)
395 PF04127 DFP: DNA / pantothena 28.2 1E+02 0.0022 28.2 4.7 27 73-99 26-52 (185)
396 CHL00067 rps2 ribosomal protei 28.1 5.2E+02 0.011 24.5 13.0 38 432-473 162-201 (230)
397 cd06533 Glyco_transf_WecG_TagA 28.1 2E+02 0.0043 25.8 6.6 98 367-472 29-138 (171)
398 cd03146 GAT1_Peptidase_E Type 28.0 4.9E+02 0.011 24.1 9.7 95 368-463 15-122 (212)
399 PF02302 PTS_IIB: PTS system, 28.0 1.2E+02 0.0027 23.4 4.7 36 58-99 1-37 (90)
400 PRK07453 protochlorophyllide o 28.0 1E+02 0.0023 30.6 5.3 33 57-98 6-38 (322)
401 PRK05884 short chain dehydroge 27.9 97 0.0021 28.9 4.8 32 57-98 1-32 (223)
402 PRK13982 bifunctional SbtC-lik 27.8 1E+02 0.0022 32.8 5.1 87 5-99 7-106 (475)
403 PRK05579 bifunctional phosphop 27.7 1.2E+02 0.0027 31.4 5.8 38 55-99 5-42 (399)
404 PLN02496 probable phosphopanto 27.7 1.1E+02 0.0023 28.6 4.8 37 55-100 18-55 (209)
405 PLN02240 UDP-glucose 4-epimera 27.6 80 0.0017 31.7 4.4 23 72-97 14-36 (352)
406 PRK00048 dihydrodipicolinate r 27.6 2.3E+02 0.005 27.3 7.4 43 426-470 55-97 (257)
407 PF13614 AAA_31: AAA domain; P 27.5 1.5E+02 0.0032 25.6 5.6 28 72-99 11-38 (157)
408 PRK11199 tyrA bifunctional cho 27.4 1E+02 0.0022 31.6 5.2 26 73-98 105-130 (374)
409 PRK05569 flavodoxin; Provision 27.4 1.4E+02 0.0031 25.4 5.4 36 58-98 3-38 (141)
410 PRK05653 fabG 3-ketoacyl-(acyl 26.9 98 0.0021 28.9 4.7 25 72-99 14-38 (246)
411 PRK14495 putative molybdopteri 26.9 1.2E+02 0.0025 31.9 5.3 36 57-97 1-36 (452)
412 PF00258 Flavodoxin_1: Flavodo 26.9 1E+02 0.0022 26.4 4.3 31 71-101 6-36 (143)
413 TIGR02700 flavo_MJ0208 archaeo 26.8 1E+02 0.0023 29.3 4.7 27 73-99 10-38 (234)
414 COG1663 LpxK Tetraacyldisaccha 26.7 1.1E+02 0.0023 30.8 4.9 44 54-102 44-89 (336)
415 PF01081 Aldolase: KDPG and KH 26.7 5.1E+02 0.011 23.9 9.5 84 372-460 21-106 (196)
416 PLN02989 cinnamyl-alcohol dehy 26.7 1.1E+02 0.0025 30.2 5.3 26 73-98 12-37 (325)
417 PRK14620 NAD(P)H-dependent gly 26.5 82 0.0018 31.5 4.2 32 57-99 1-32 (326)
418 PHA02518 ParA-like protein; Pr 26.5 82 0.0018 28.9 3.9 27 72-98 9-37 (211)
419 PRK08306 dipicolinate synthase 26.5 5.9E+02 0.013 25.1 10.2 24 73-97 9-32 (296)
420 PLN02650 dihydroflavonol-4-red 26.5 1.2E+02 0.0025 30.7 5.4 26 73-98 12-37 (351)
421 cd01075 NAD_bind_Leu_Phe_Val_D 26.4 1.6E+02 0.0035 27.1 5.8 33 53-96 25-57 (200)
422 TIGR03012 sulf_tusD_dsrE sulfu 26.3 1.5E+02 0.0033 25.1 5.2 38 58-98 1-39 (127)
423 PRK08655 prephenate dehydrogen 26.3 74 0.0016 33.5 3.9 33 57-99 1-33 (437)
424 PRK11891 aspartate carbamoyltr 26.2 6.8E+02 0.015 26.3 10.8 112 305-440 205-317 (429)
425 PRK03767 NAD(P)H:quinone oxido 26.2 1.2E+02 0.0026 27.9 5.0 37 57-98 2-39 (200)
426 PRK15181 Vi polysaccharide bio 26.2 1E+02 0.0022 31.1 4.9 26 73-98 22-47 (348)
427 PRK06523 short chain dehydroge 26.1 1.2E+02 0.0027 28.7 5.2 24 72-98 18-41 (260)
428 PRK09590 celB cellobiose phosp 26.1 1.1E+02 0.0025 24.9 4.2 35 58-98 3-37 (104)
429 PRK13931 stationary phase surv 26.1 90 0.002 30.3 4.1 39 57-102 1-42 (261)
430 PRK12320 hypothetical protein; 26.0 75 0.0016 35.6 4.0 26 73-98 7-32 (699)
431 PF00185 OTCace: Aspartate/orn 25.8 88 0.0019 27.7 3.8 36 56-100 2-37 (158)
432 PF07015 VirC1: VirC1 protein; 25.6 98 0.0021 29.4 4.1 35 57-97 1-37 (231)
433 PRK09483 response regulator; P 25.6 4.9E+02 0.011 23.3 9.7 70 431-503 47-120 (217)
434 TIGR02622 CDP_4_6_dhtase CDP-g 25.5 87 0.0019 31.6 4.2 23 72-97 13-35 (349)
435 PRK12825 fabG 3-ketoacyl-(acyl 25.4 1.1E+02 0.0023 28.6 4.6 25 72-99 15-39 (249)
436 PRK08340 glucose-1-dehydrogena 25.4 1E+02 0.0022 29.5 4.4 32 57-98 1-32 (259)
437 TIGR02113 coaC_strep phosphopa 24.9 1.4E+02 0.0029 27.1 4.9 24 76-99 13-36 (177)
438 PRK07417 arogenate dehydrogena 24.6 93 0.002 30.4 4.1 32 57-99 1-32 (279)
439 PF00185 OTCace: Aspartate/orn 24.6 4.7E+02 0.01 23.0 8.2 76 356-441 3-83 (158)
440 PF10649 DUF2478: Protein of u 24.6 1.6E+02 0.0034 26.2 5.0 35 427-461 89-129 (159)
441 PRK06182 short chain dehydroge 24.5 1.2E+02 0.0026 29.1 4.9 24 72-98 12-35 (273)
442 TIGR00872 gnd_rel 6-phosphoglu 24.5 1E+02 0.0023 30.4 4.4 24 74-97 7-30 (298)
443 TIGR03466 HpnA hopanoid-associ 24.4 84 0.0018 31.0 3.9 26 73-98 7-32 (328)
444 PF03721 UDPG_MGDP_dh_N: UDP-g 24.4 71 0.0015 29.1 3.0 30 57-97 1-30 (185)
445 PRK06444 prephenate dehydrogen 24.4 77 0.0017 29.3 3.2 28 57-94 1-28 (197)
446 PRK11475 DNA-binding transcrip 24.2 5.8E+02 0.012 23.6 9.4 70 432-503 38-114 (207)
447 TIGR01755 flav_wrbA NAD(P)H:qu 24.1 1.6E+02 0.0034 27.2 5.2 37 57-98 1-38 (197)
448 PRK07102 short chain dehydroge 24.0 99 0.0021 29.1 4.1 25 72-99 10-34 (243)
449 cd03116 MobB Molybdenum is an 23.8 1.7E+02 0.0037 25.9 5.2 37 57-98 1-37 (159)
450 PRK09620 hypothetical protein; 23.7 1.4E+02 0.003 28.3 4.9 23 76-98 29-51 (229)
451 PRK08177 short chain dehydroge 23.5 1E+02 0.0022 28.6 4.0 34 57-99 1-34 (225)
452 PRK02122 glucosamine-6-phospha 23.5 1.6E+02 0.0035 32.8 6.0 42 55-102 368-409 (652)
453 PRK13886 conjugal transfer pro 23.4 1.2E+02 0.0026 29.1 4.3 35 57-97 2-38 (241)
454 PRK13394 3-hydroxybutyrate deh 23.4 1.3E+02 0.0027 28.6 4.7 33 57-98 7-39 (262)
455 PRK06027 purU formyltetrahydro 23.3 2.6E+02 0.0056 27.5 6.9 41 52-101 85-127 (286)
456 PRK08267 short chain dehydroge 23.1 1.1E+02 0.0023 29.2 4.1 33 57-98 1-33 (260)
457 PRK05447 1-deoxy-D-xylulose 5- 23.1 3.9E+02 0.0084 27.6 8.2 85 367-463 36-123 (385)
458 KOG2452 Formyltetrahydrofolate 23.0 1.6E+02 0.0034 30.7 5.2 31 57-98 1-31 (881)
459 PF03853 YjeF_N: YjeF-related 22.8 2.7E+02 0.0058 24.9 6.4 39 54-99 23-61 (169)
460 PRK05717 oxidoreductase; Valid 22.8 1.3E+02 0.0029 28.4 4.8 31 58-97 11-41 (255)
461 PRK06953 short chain dehydroge 22.8 93 0.002 28.8 3.6 33 57-98 1-33 (222)
462 PRK08703 short chain dehydroge 22.8 1.6E+02 0.0036 27.4 5.4 25 72-99 15-39 (239)
463 PRK13556 azoreductase; Provisi 22.6 1.7E+02 0.0037 27.0 5.3 40 57-98 2-44 (208)
464 PRK08410 2-hydroxyacid dehydro 22.6 3.2E+02 0.0069 27.2 7.5 44 424-469 189-237 (311)
465 PRK06129 3-hydroxyacyl-CoA deh 22.6 1.2E+02 0.0027 30.0 4.6 25 75-99 10-34 (308)
466 COG1091 RfbD dTDP-4-dehydrorha 22.5 1.7E+02 0.0036 28.8 5.2 25 73-98 7-31 (281)
467 PLN02712 arogenate dehydrogena 22.5 1.2E+02 0.0027 33.8 4.9 39 50-99 46-84 (667)
468 PRK08673 3-deoxy-7-phosphohept 22.4 8.2E+02 0.018 24.7 11.0 91 369-462 105-207 (335)
469 PRK06194 hypothetical protein; 22.3 1.3E+02 0.0028 29.1 4.7 24 72-98 15-38 (287)
470 PRK06753 hypothetical protein; 22.3 90 0.002 31.7 3.7 30 57-97 1-30 (373)
471 PRK03094 hypothetical protein; 22.3 45 0.00098 25.8 1.0 23 75-97 6-28 (80)
472 PF00551 Formyl_trans_N: Formy 22.3 1.3E+02 0.0028 27.2 4.3 27 57-92 1-27 (181)
473 PRK10818 cell division inhibit 22.2 1.8E+02 0.0038 28.1 5.5 35 57-97 2-38 (270)
474 TIGR01769 GGGP geranylgeranylg 22.1 2.4E+02 0.0052 26.3 6.0 72 363-440 4-78 (205)
475 TIGR00036 dapB dihydrodipicoli 22.1 2.5E+02 0.0054 27.2 6.5 34 430-463 67-100 (266)
476 PRK00211 sulfur relay protein 22.1 2E+02 0.0044 24.0 5.1 41 57-101 2-43 (119)
477 PRK00094 gpsA NAD(P)H-dependen 21.9 1.1E+02 0.0023 30.5 4.1 31 57-98 2-32 (325)
478 PRK06701 short chain dehydroge 21.8 1.6E+02 0.0034 28.9 5.1 24 72-98 55-78 (290)
479 TIGR00521 coaBC_dfp phosphopan 21.8 1.7E+02 0.0036 30.3 5.4 37 56-99 3-39 (390)
480 cd03145 GAT1_cyanophycinase Ty 21.8 6.6E+02 0.014 23.4 10.8 81 383-463 28-125 (217)
481 PF01884 PcrB: PcrB family; I 21.8 2.3E+02 0.005 26.9 5.8 75 359-440 9-84 (230)
482 PLN02863 UDP-glucoronosyl/UDP- 21.8 1.8E+02 0.0039 31.1 5.8 139 355-508 284-438 (477)
483 PRK06015 keto-hydroxyglutarate 21.7 6.5E+02 0.014 23.3 10.0 70 370-441 15-86 (201)
484 PRK05876 short chain dehydroge 21.7 1.6E+02 0.0034 28.5 5.1 32 57-97 6-37 (275)
485 COG0512 PabA Anthranilate/para 21.7 1.3E+02 0.0029 27.5 4.0 34 56-99 1-34 (191)
486 PRK10430 DNA-binding transcrip 21.6 6.6E+02 0.014 23.4 11.9 68 431-501 49-120 (239)
487 PF02780 Transketolase_C: Tran 21.6 2.2E+02 0.0048 23.7 5.4 35 57-99 10-44 (124)
488 TIGR02114 coaB_strep phosphopa 21.6 90 0.002 29.5 3.2 24 71-97 23-46 (227)
489 PRK03692 putative UDP-N-acetyl 21.6 5.4E+02 0.012 24.6 8.5 98 369-473 90-197 (243)
490 PRK12829 short chain dehydroge 21.6 1E+02 0.0023 29.2 3.8 34 55-98 10-43 (264)
491 PLN03050 pyridoxine (pyridoxam 21.5 3.2E+02 0.007 26.2 7.0 35 57-98 61-95 (246)
492 PRK06932 glycerate dehydrogena 21.4 2.8E+02 0.0062 27.6 6.9 44 425-470 191-239 (314)
493 PRK08265 short chain dehydroge 21.4 1.7E+02 0.0037 27.9 5.2 32 58-98 7-38 (261)
494 PRK14493 putative bifunctional 21.4 1.6E+02 0.0035 28.8 4.9 35 57-97 1-35 (274)
495 PRK15059 tartronate semialdehy 21.0 1.2E+02 0.0025 30.0 3.9 24 74-97 7-30 (292)
496 PRK14489 putative bifunctional 21.0 3.1E+02 0.0067 28.0 7.2 42 52-98 200-241 (366)
497 PF01408 GFO_IDH_MocA: Oxidore 20.9 4.1E+02 0.0089 21.5 6.9 54 400-461 37-92 (120)
498 TIGR01768 GGGP-family geranylg 20.8 1.5E+02 0.0032 28.1 4.3 73 362-440 4-80 (223)
499 PRK12745 3-ketoacyl-(acyl-carr 20.8 1.3E+02 0.0029 28.4 4.3 32 58-98 3-34 (256)
500 KOG2585 Uncharacterized conser 20.8 2.1E+02 0.0046 29.7 5.7 38 58-102 268-305 (453)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.1e-103 Score=845.66 Aligned_cols=533 Identities=35% Similarity=0.630 Sum_probs=481.5
Q ss_pred CccccCCCchhhhHHHHHHhhccchhHHHhhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHh
Q 009217 1 MVLTGMINSGEASNLRKLVFDYKVSVADLFADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVT 80 (540)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~ 80 (540)
|||+|+|+++|||+||+|||+|+.+|+++|+++++++|+|+++++++|++++++++|||+|||+|++|++++||++.++.
T Consensus 426 ~~~~~~~~~~~a~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILfVasE~aP~aKtGGLaDVv~ 505 (977)
T PLN02939 426 WLLEKKISNNDAKLLREMVWKRDGRIREAYLSCKGKNEREAVENFLKLTLSGTSSGLHIVHIAAEMAPVAKVGGLADVVS 505 (977)
T ss_pred HHHhccCChhhHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHHhccCCCCCCCEEEEEEcccccccccccHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCCCCCCCCCCCCCC
Q 009217 81 GLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYG 160 (540)
Q Consensus 81 ~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~ 160 (540)
+|+++|+++||+|.||+|.|+++......+++.....+.++++|+.+.+++|++.++||++|+|++.++..||.|..+|+
T Consensus 506 sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg 585 (977)
T PLN02939 506 GLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYG 585 (977)
T ss_pred HHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCC
Confidence 99999999999999999999987644444444333345567788788899999999999999998654445899999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCC
Q 009217 161 YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGL 240 (540)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~ 240 (540)
+.|++.||++||+++++++.+.+++|||||||||++++++++++..|..+++.++|+|+||||+.|||.++...+..+|+
T Consensus 586 ~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL 665 (977)
T PLN02939 586 EHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGL 665 (977)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCC
Confidence 99999999999999999999888999999999999999988888777666667899999999999999998888888999
Q ss_pred CccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCC
Q 009217 241 DPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSN 320 (540)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~ 320 (540)
++..+..++.++++ .+..+|++|.++.+||.|+|||++|++++.. .+|.||++++..+.+|+.+|+||||++.|+|.+
T Consensus 666 ~~~~l~~~d~le~~-~~~~iN~LK~GIv~AD~VtTVSptYA~EI~t-e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPat 743 (977)
T PLN02939 666 DVHQLDRPDRMQDN-AHGRINVVKGAIVYSNIVTTVSPTYAQEVRS-EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPST 743 (977)
T ss_pred CHHHccChhhhhhc-cCCchHHHHHHHHhCCeeEeeeHHHHHHHHH-HhccchHHHhccccCCceEEecceehhhcCCcc
Confidence 98877667777543 2357999999999999999999999999987 789999999999999999999999999999999
Q ss_pred CcccccccCcccccCcHHHHHHHHHHhCCCCC-CCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHH
Q 009217 321 DKFLTENYCAEDMKGKTVCKVTLQQQLGLSKD-ASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSAS 399 (540)
Q Consensus 321 ~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~-~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~ 399 (540)
|++++.+|++++++||..++.++++++|++.+ ++.|+|+|+||+.++||++.|++|+..+.+.+++|+|+|+|+.+.++
T Consensus 744 D~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e 823 (977)
T PLN02939 744 DRFLKVQYNANDLQGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQ 823 (977)
T ss_pred ccccccccChhhhhhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHH
Confidence 99999999999999999999999999999853 46799999999999999999999999887778999999998766677
Q ss_pred HHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCC-
Q 009217 400 RALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE- 477 (540)
Q Consensus 400 ~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~- 477 (540)
+.+++++++++. ++|+|++.+++.+.+.+|++||+||+||++||||+++||||+||+|||++++ ||+.|+|.+...
T Consensus 824 ~eL~~La~~l~l~drV~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~v--GGL~DtV~d~d~e 901 (977)
T PLN02939 824 REFEGIADQFQSNNNIRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKT--GGLNDSVFDFDDE 901 (977)
T ss_pred HHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecC--CCCcceeecCCcc
Confidence 889999999874 7899999999998899999999999999999999999999999999999999 999999864210
Q ss_pred ---ccccceeecCCCCHHHHHHHHHHHh----cCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q 009217 478 ---STRFSRFISSTFGNISLSQALEEIK----NNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 478 ---~~g~~G~l~~~~d~~~la~ai~~l~----~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~l~ 538 (540)
..|.|||+|++.|+++|+++|.+++ +|++.|++|+++++.++|||+.++++ |+++|+++.
T Consensus 902 ~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~am~~dFSWe~~A~q-YeeLY~~ll 968 (977)
T PLN02939 902 TIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKDMNIDFSWDSSASQ-YEELYQRAV 968 (977)
T ss_pred ccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHH
Confidence 1257899999999999999988765 48999999999999899999999999 699999874
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=2e-76 Score=623.44 Aligned_cols=464 Identities=22% Similarity=0.373 Sum_probs=391.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
++||||||++|+.|++++||+++++..|.++|+++||+|.|++|.|+++... ......+ ..+.+++++ ..+++..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~~ 76 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAG-IEDAEQV-HSFPDLFGG---PARLLAA 76 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhh-hcCceEE-EEEeeeCCc---eEEEEEE
Confidence 5699999999999999999999999999999999999999999999987432 2222211 233334433 4678888
Q ss_pred EEcCeeEEEEccCCCCCCCCCCC-CC------CCCChhHHHHHHHHHHHHHHHHc--CCCCCEEEEcCCchhhHHHHHHH
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRES-VY------GYSDDFERFTYFSRASLDYIVKS--RKQPDVLHIHNWETAIVGPLFWD 205 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~-~y------~~~~~~~r~~~~~~~~~~~~~~~--~~~pDIIH~h~~~~~~~~~~~~~ 205 (540)
..+|+++|+++ ++.||.|.+ +| +|.|+.+||++||++++++++.. +++|||||+|+|++++++.+++.
T Consensus 77 ~~~~v~~~~~~---~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~ 153 (485)
T PRK14099 77 RAGGLDLFVLD---APHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHY 153 (485)
T ss_pred EeCCceEEEEe---ChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHh
Confidence 88999999998 356888774 66 46799999999999999988763 68999999999999999877642
Q ss_pred HHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhh
Q 009217 206 IFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRI 285 (540)
Q Consensus 206 ~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~ 285 (540)
....++|+|+|+||+.+++.++...+..+|+++..+. ++.++++ ..+++++.++.+||.|++||+.+++++.
T Consensus 154 ----~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~k~~i~~ad~vitVS~~~a~ei~ 225 (485)
T PRK14099 154 ----SGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFS-LDGVEYY---GGIGYLKAGLQLADRITTVSPTYALEIQ 225 (485)
T ss_pred ----CCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcC-chhhhhC---CCccHHHHHHHhcCeeeecChhHHHHHh
Confidence 1124689999999999999888777777787765432 3344444 3468899999999999999999999988
Q ss_pred hcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc
Q 009217 286 IRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV 365 (540)
Q Consensus 286 ~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~ 365 (540)
....|.|+++.+..+.+|+.+|+||||++.|+|.+++.++.+|+.+++++|..++..+++++|++.+++.++++++||+.
T Consensus 226 ~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~ 305 (485)
T PRK14099 226 GPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLS 305 (485)
T ss_pred cccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCC
Confidence 76678889988888889999999999999999999999999999999999999999999999998665678999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCc
Q 009217 366 SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLL 445 (540)
Q Consensus 366 ~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fg 445 (540)
++||++.|++|++.+.+.+++|+|+|+|+ +.+++.+++++++++ +++.++.+++++..+.++++||+||+||++||||
T Consensus 306 ~~KG~d~Li~A~~~l~~~~~~lvivG~G~-~~~~~~l~~l~~~~~-~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fG 383 (485)
T PRK14099 306 WQKGLDLLLEALPTLLGEGAQLALLGSGD-AELEARFRAAAQAYP-GQIGVVIGYDEALAHLIQAGADALLVPSRFEPCG 383 (485)
T ss_pred ccccHHHHHHHHHHHHhcCcEEEEEecCC-HHHHHHHHHHHHHCC-CCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCc
Confidence 99999999999999887789999999774 457788999988876 6665455677766655667899999999999999
Q ss_pred hHHHHHHhcCCceEEEecCCCccccceeccCC---ccc-cceeecCCCCHHHHHHHHHH---HhcCHHHHHHHHHHHHhc
Q 009217 446 QVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE---STR-FSRFISSTFGNISLSQALEE---IKNNPLSWKRKIKDAMLQ 518 (540)
Q Consensus 446 lv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~---~~g-~~G~l~~~~d~~~la~ai~~---l~~~~~~~~~~~~~a~~~ 518 (540)
+++||||+||+|||++++ ||++|+|.+..+ ..| .+|+++++.|+++|+++|.+ +++|++.|++|+++++++
T Consensus 384 l~~lEAma~G~ppVvs~~--GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~~~ 461 (485)
T PRK14099 384 LTQLCALRYGAVPVVARV--GGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRNGMTT 461 (485)
T ss_pred HHHHHHHHCCCCcEEeCC--CCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhh
Confidence 999999999999999998 999999865311 001 46899999999999999986 678999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHhc
Q 009217 519 DFSWDADCNDIHISAYTAIKN 539 (540)
Q Consensus 519 ~fsw~~~a~~~y~~lY~~l~~ 539 (540)
+|||++++++ |+++|+++.+
T Consensus 462 ~fSw~~~a~~-y~~lY~~l~~ 481 (485)
T PRK14099 462 DVSWRNPAQH-YAALYRSLVA 481 (485)
T ss_pred cCChHHHHHH-HHHHHHHHHh
Confidence 9999999999 6999998753
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=7.1e-76 Score=619.88 Aligned_cols=471 Identities=21% Similarity=0.343 Sum_probs=392.1
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCcccc--ccCcceeeeeeeeecCCeeeeeE
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDG--VQGLREIKAECYSYFNGQLHANK 130 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~ 130 (540)
.+++||||||++|++|++++||+++++..|.++|+++||+|.|++|.|.++.... ..... ....+.+.+++.....+
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVL-RLSDIEVPLKEKTDLLH 80 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccce-EEEEEEEeecCeeEEEE
Confidence 3556999999999999999999999999999999999999999999999875321 11111 11223333333222222
Q ss_pred EEEEEEc--CeeEEEEccCCCCCCCCCCCCCC-------CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHH
Q 009217 131 IWIGVVS--GIGVTFIQPLHYSSFFNRESVYG-------YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGP 201 (540)
Q Consensus 131 ~~~~~~~--gv~v~~i~~~~~~~~~~~~~~y~-------~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~ 201 (540)
+.....+ |+++|+++ ++.||.|.++|+ |.|+.+||.+|++++++++++.+++|||||+|+|+++++|.
T Consensus 81 ~~~~~~~~~~v~~~~~~---~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t~l~~~ 157 (489)
T PRK14098 81 VKVTALPSSKIQTYFLY---NEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYAGLVPL 157 (489)
T ss_pred EEEecccCCCceEEEEe---CHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHHHHHHH
Confidence 2222233 69999997 467999988885 46999999999999999998878899999999999999999
Q ss_pred HHHHHHhh-cCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccc
Q 009217 202 LFWDIFVK-QGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMH 280 (540)
Q Consensus 202 ~~~~~~~~-~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~ 280 (540)
+++..+.. ..+.++|+|+|+|++.+||.++...+... ++.... +.++.+ ...+|++|.++.+||.|++||+++
T Consensus 158 ~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~---~~~~~~--~~~~n~lk~~i~~ad~VitVS~~~ 231 (489)
T PRK14098 158 LLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVC---SGLHRE--GDEVNMLYTGVEHADLLTTTSPRY 231 (489)
T ss_pred HHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhh---hhhhhc--CCcccHHHHHHHhcCcceeeCHHH
Confidence 88765432 12358999999999999998776554332 333221 112111 146899999999999999999999
Q ss_pred hhhhhhc-ccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEE
Q 009217 281 SKGRIIR-SLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVG 359 (540)
Q Consensus 281 ~~~~~~~-~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~ 359 (540)
++++... ..++|+++.|..+..|+.+|+||||++.|+|.+++.+..+|+.+++++|..+|..+++++|++.+++.++++
T Consensus 232 a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lgl~~~~~~~~i~ 311 (489)
T PRK14098 232 AEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVGLPFDEETPLVG 311 (489)
T ss_pred HHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhCCCCccCCCEEE
Confidence 9998763 567889999988889999999999999999999999999999999999999999999999998777789999
Q ss_pred EEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECC
Q 009217 360 CIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHS 439 (540)
Q Consensus 360 ~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS 439 (540)
++||+.++||++.|++|+..+.+.+++|+|+|+|+ ..+++.+++++++++ ++|.|.+.+++++++.+|++||+|++||
T Consensus 312 ~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~-~~~~~~l~~l~~~~~-~~V~~~g~~~~~~~~~~~a~aDi~l~PS 389 (489)
T PRK14098 312 VIINFDDFQGAELLAESLEKLVELDIQLVICGSGD-KEYEKRFQDFAEEHP-EQVSVQTEFTDAFFHLAIAGLDMLLMPG 389 (489)
T ss_pred EeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCC-HHHHHHHHHHHHHCC-CCEEEEEecCHHHHHHHHHhCCEEEeCC
Confidence 99999999999999999999987799999999875 346788999999886 7999999999999999999999999999
Q ss_pred CCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh---cCHHHHHHHHHHHH
Q 009217 440 FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK---NNPLSWKRKIKDAM 516 (540)
Q Consensus 440 ~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~---~~~~~~~~~~~~a~ 516 (540)
.+||||+++||||+||+|||++++ ||++|+|.+.. .++.+|+++++.|+++|+++|.+++ +|++.|.+++++++
T Consensus 390 ~~E~~Gl~~lEAma~G~ppVv~~~--GGl~d~v~~~~-~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~ 466 (489)
T PRK14098 390 KIESCGMLQMFAMSYGTIPVAYAG--GGIVETIEEVS-EDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAM 466 (489)
T ss_pred CCCCchHHHHHHHhCCCCeEEecC--CCCceeeecCC-CCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence 999999999999999999999999 99999986421 1245789999999999999998754 78999999999999
Q ss_pred hccCChHHHHHHHHHHHHHHHhc
Q 009217 517 LQDFSWDADCNDIHISAYTAIKN 539 (540)
Q Consensus 517 ~~~fsw~~~a~~~y~~lY~~l~~ 539 (540)
+++|||++++++ |+++|+++.+
T Consensus 467 ~~~fsw~~~a~~-y~~lY~~~~~ 488 (489)
T PRK14098 467 ERDFSWKNSAEE-YAQLYRELLG 488 (489)
T ss_pred cCCCChHHHHHH-HHHHHHHHhc
Confidence 899999999999 6999998753
No 4
>PLN02316 synthase/transferase
Probab=100.00 E-value=1e-73 Score=626.00 Aligned_cols=440 Identities=30% Similarity=0.488 Sum_probs=372.4
Q ss_pred CCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeee
Q 009217 50 SGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHAN 129 (540)
Q Consensus 50 ~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 129 (540)
...++++|||+||++|++|++++||+++++.+|+++|+++||+|+||+|.|+++.......+.. .....+++ ..+
T Consensus 581 ~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~---~~~~~~~~--~~~ 655 (1036)
T PLN02316 581 GIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHY---QRSYSWGG--TEI 655 (1036)
T ss_pred CCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceE---EEEeccCC--EEE
Confidence 3456788999999999999999999999999999999999999999999998764332222211 11222222 356
Q ss_pred EEEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhh
Q 009217 130 KIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVK 209 (540)
Q Consensus 130 ~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~ 209 (540)
++|.+.++|+++|+|++. ..+|.+..+|++.|+..||.+|++++++++++.+++|||||+|+|++++++.+++..+..
T Consensus 656 ~v~~~~~~GV~vyfl~~~--~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~ 733 (1036)
T PLN02316 656 KVWFGKVEGLSVYFLEPQ--NGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAH 733 (1036)
T ss_pred EEEEEEECCcEEEEEecc--ccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhh
Confidence 789999999999999853 258888889999999999999999999999988889999999999999999988876654
Q ss_pred cCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhccc
Q 009217 210 QGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSL 289 (540)
Q Consensus 210 ~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~ 289 (540)
.++.++|+|+|+|++.++ .+.++.++.+||.|++||+++++++....
T Consensus 734 ~~~~~~p~V~TiHnl~~~--------------------------------~n~lk~~l~~AD~ViTVS~tya~EI~~~~- 780 (1036)
T PLN02316 734 YGLSKARVVFTIHNLEFG--------------------------------ANHIGKAMAYADKATTVSPTYSREVSGNS- 780 (1036)
T ss_pred hccCCCCEEEEeCCcccc--------------------------------hhHHHHHHHHCCEEEeCCHHHHHHHHhcc-
Confidence 445789999999986542 13456788999999999999999886521
Q ss_pred CCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccc-cCcHHHHHHHHHHhCCCCCCCceEEEEEecccccC
Q 009217 290 SHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDM-KGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDV 368 (540)
Q Consensus 290 ~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~-~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~K 368 (540)
+ +..+..|+.+|+||||++.|+|.+|++++.+|+++++ .||..++..+++++|++. .+.|+++|+|||.++|
T Consensus 781 --~----l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~-~d~plVg~VGRL~~qK 853 (1036)
T PLN02316 781 --A----IAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQ-ADLPLVGIITRLTHQK 853 (1036)
T ss_pred --C----cccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCc-ccCeEEEEEecccccc
Confidence 1 1124589999999999999999999999999999886 789999999999999984 3569999999999999
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC---CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCc
Q 009217 369 FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD---GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLL 445 (540)
Q Consensus 369 G~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~---~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fg 445 (540)
|+++|++|+..+.+.+++|+|+|+|+++.+++.+++++++++. ++|.|.+.+++.+.+.+|++||+||+||++||||
T Consensus 854 GvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~G 933 (1036)
T PLN02316 854 GIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCG 933 (1036)
T ss_pred CHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCcc
Confidence 9999999999988789999999998776778889999997642 6899999999888889999999999999999999
Q ss_pred hHHHHHHhcCCceEEEecCCCccccceeccCC--------ccccceeecCCCCHHHHHHHHHHHhcC----HHHHHHHHH
Q 009217 446 QVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE--------STRFSRFISSTFGNISLSQALEEIKNN----PLSWKRKIK 513 (540)
Q Consensus 446 lv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~--------~~g~~G~l~~~~d~~~la~ai~~l~~~----~~~~~~~~~ 513 (540)
+++||||+||+|||++++ ||++|+|.+... +.+.+||+|++.|+++|+++|.+++.+ +..+.++++
T Consensus 934 LvqLEAMa~GtppVvs~v--GGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r 1011 (1036)
T PLN02316 934 LTQLTAMRYGSIPVVRKT--GGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCK 1011 (1036)
T ss_pred HHHHHHHHcCCCeEEEcC--CCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999999999 999999975310 124679999999999999999988764 455677888
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHhc
Q 009217 514 DAMLQDFSWDADCNDIHISAYTAIKN 539 (540)
Q Consensus 514 ~a~~~~fsw~~~a~~~y~~lY~~l~~ 539 (540)
++++++|||+.+|++ |+++|+.+++
T Consensus 1012 ~~m~~dFSW~~~A~~-Y~~LY~~a~~ 1036 (1036)
T PLN02316 1012 RVMEQDWSWNRPALD-YMELYHSARK 1036 (1036)
T ss_pred HHHHhhCCHHHHHHH-HHHHHHHHhC
Confidence 888899999999999 6999998864
No 5
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=2.5e-73 Score=604.17 Aligned_cols=465 Identities=31% Similarity=0.503 Sum_probs=401.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++||+|++|+.++||+++++.+|+++|+++||+|+|++|.|++..... ....+......++++++.+.+++|+..+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEV-DDQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhh-ccCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 899999999999999999999999999999999999999999999765432 2223333455677888889999999999
Q ss_pred cCeeEEEEccCCCCCCCCCC-CCCC--CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCC
Q 009217 137 SGIGVTFIQPLHYSSFFNRE-SVYG--YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~-~~y~--~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~ 213 (540)
+|+++|++++ +.+|.+. .+|+ +.|+..||.+|++++++++++.+.+|||||+|+|++++++.+++..+. ..
T Consensus 80 ~~v~~~~i~~---~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~---~~ 153 (473)
T TIGR02095 80 EGVPVYFIDN---PSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYR---PN 153 (473)
T ss_pred CCceEEEEEC---HHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhcc---CC
Confidence 9999999984 3467774 4787 789999999999999999988778999999999999999888865421 01
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCc
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 293 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl 293 (540)
++|+|+|+|++.++|.++...+..++++...+. ...++.+ ..+++++.++.+||.|++||+.+++++....++.|+
T Consensus 154 ~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l 229 (473)
T TIGR02095 154 PIKTVFTIHNLAYQGVFPADDFSELGLPPEYFH-MEGLEFY---GRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGL 229 (473)
T ss_pred CCCEEEEcCCCccCCcCCHHHHHHcCCChHHcC-chhhhcC---CchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccc
Confidence 489999999999999887766666676654332 2223333 368999999999999999999999998876778888
Q ss_pred hHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHH
Q 009217 294 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL 373 (540)
Q Consensus 294 ~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~L 373 (540)
+..+..++.++.+|+||+|++.|+|.++..++.+|+.+++++|..++..+++++|++.+++.++++|+||+.++||++.|
T Consensus 230 ~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~l 309 (473)
T TIGR02095 230 DGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLL 309 (473)
T ss_pred hhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHH
Confidence 88888788999999999999999999999999999999999999999999999999875567999999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 374 KAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 374 i~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
++|++++.+.+++|+|+|+|+ +.+.+.+++++++++ +++.|.+++++++++.+|++||++++||.+||||++++|||+
T Consensus 310 i~a~~~l~~~~~~lvi~G~g~-~~~~~~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma 387 (473)
T TIGR02095 310 LAALPELLELGGQLVVLGTGD-PELEEALRELAERYP-GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMR 387 (473)
T ss_pred HHHHHHHHHcCcEEEEECCCC-HHHHHHHHHHHHHCC-CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHH
Confidence 999999987789999999774 567788999988875 789999999999889999999999999999999999999999
Q ss_pred cCCceEEEecCCCccccceeccC-CccccceeecCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCChHHHHHH
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQALEEIKN----NPLSWKRKIKDAMLQDFSWDADCND 528 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~-~~~g~~G~l~~~~d~~~la~ai~~l~~----~~~~~~~~~~~a~~~~fsw~~~a~~ 528 (540)
||+|||++++ ||+.|+|.+.. ...+.+|+++++.|+++|+++|.++++ |++.|++|++++++++|||++++++
T Consensus 388 ~G~pvI~s~~--gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~fsw~~~a~~ 465 (473)
T TIGR02095 388 YGTVPIVRRT--GGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAMSQDFSWDKSAKQ 465 (473)
T ss_pred CCCCeEEccC--CCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCcHHHHHH
Confidence 9999999999 99999997421 012267899999999999999999877 9999999999999899999999999
Q ss_pred HHHHHHHHH
Q 009217 529 IHISAYTAI 537 (540)
Q Consensus 529 ~y~~lY~~l 537 (540)
|+++|+++
T Consensus 466 -~~~~Y~~l 473 (473)
T TIGR02095 466 -YVELYRSL 473 (473)
T ss_pred -HHHHHHhC
Confidence 69999874
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.9e-73 Score=601.18 Aligned_cols=459 Identities=27% Similarity=0.446 Sum_probs=389.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE--
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG-- 134 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 134 (540)
|||++|++|++|..++||+++++.+|+++|+++||+|+|++|.|+...... .....+ ... ...++|..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~---~~~------~~~~~~~~~~ 70 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVV---GRL------DLFTVLFGHL 70 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEE---EEe------eeEEEEEEeE
Confidence 899999999999999999999999999999999999999999998754321 111111 010 11345554
Q ss_pred EEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCC
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 214 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~ 214 (540)
..+|+++|++++ +.+|.+..+|++.|+..||.+|++++++++++++.+|||||+|+|++++++.+++..+ ..++.+
T Consensus 71 ~~~gv~v~~v~~---~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~-~~~~~~ 146 (466)
T PRK00654 71 EGDGVPVYLIDA---PHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKY-WRGYPD 146 (466)
T ss_pred EcCCceEEEEeC---HHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhh-hccCCC
Confidence 458999999984 5688888899999999999999999999998877899999999999999998887654 333457
Q ss_pred CceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCch
Q 009217 215 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 215 ~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
+|+|+|+|++.++|.++...+..++++...+. .+.++.+ ...++++.+++.||.|++||+.+++++....+|.||+
T Consensus 147 ~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~ 222 (466)
T PRK00654 147 IKTVFTIHNLAYQGLFPAEILGELGLPAEAFH-LEGLEFY---GQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLE 222 (466)
T ss_pred CCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC-chhhhcC---CcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChH
Confidence 99999999999999887766666677654332 2333333 3478999999999999999999999988767788898
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
+.+..+.+|+.+||||||++.|+|.++..++.+|+++++++|..++..+++++|++. ++.++++++||+.++||++.|+
T Consensus 223 ~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~-~~~~~i~~vGRl~~~KG~~~li 301 (466)
T PRK00654 223 GLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPD-DDAPLFAMVSRLTEQKGLDLVL 301 (466)
T ss_pred HHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCC-CCCcEEEEeeccccccChHHHH
Confidence 888888899999999999999999999999999999999999999999999999984 2468999999999999999999
Q ss_pred HHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 375 AVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 375 ~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
+|++++.+.+++|+|+|+|+ +.+.+.+++++++++ +++.+..++++++.+.+|++||+||+||.+||||++++|||+|
T Consensus 302 ~a~~~l~~~~~~lvivG~g~-~~~~~~l~~l~~~~~-~~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~ 379 (466)
T PRK00654 302 EALPELLEQGGQLVLLGTGD-PELEEAFRALAARYP-GKVGVQIGYDEALAHRIYAGADMFLMPSRFEPCGLTQLYALRY 379 (466)
T ss_pred HHHHHHHhcCCEEEEEecCc-HHHHHHHHHHHHHCC-CcEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHC
Confidence 99999987799999999764 456788999999886 6788777888888889999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccC-CccccceeecCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHhccCChHHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQALEEIKN---NPLSWKRKIKDAMLQDFSWDADCNDIH 530 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~-~~~g~~G~l~~~~d~~~la~ai~~l~~---~~~~~~~~~~~a~~~~fsw~~~a~~~y 530 (540)
|+|||++++ ||++|+|.+.. ...+.+|+++++.|+++|+++|.++++ +++.+.++++++++++|||++++++ |
T Consensus 380 G~p~V~~~~--gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~-~ 456 (466)
T PRK00654 380 GTLPIVRRT--GGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAMAQDFSWDKSAEE-Y 456 (466)
T ss_pred CCCEEEeCC--CCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCChHHHHHH-H
Confidence 999999999 99999987421 011256899999999999999998775 7888999999998899999999999 6
Q ss_pred HHHHHHHhc
Q 009217 531 ISAYTAIKN 539 (540)
Q Consensus 531 ~~lY~~l~~ 539 (540)
+++|+++.+
T Consensus 457 ~~lY~~~~~ 465 (466)
T PRK00654 457 LELYRRLLG 465 (466)
T ss_pred HHHHHHHhh
Confidence 999998754
No 7
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-70 Score=560.71 Aligned_cols=468 Identities=27% Similarity=0.392 Sum_probs=402.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||+++++|+.|..++||++.++..|.++|+++|++|+|+.|.|+.........++.+ ..+.+.+++......+.+...
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVV-GKFGVLKGGRAQLFIVKEYGK 79 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhcccccee-eEeeeeecccceEEEEEeecc
Confidence 8999999999999999999999999999999999999999999995544332222222 334444444433323333332
Q ss_pred c-CeeEEEEccCCCCCCCCCC--CCCCCCChhHHHHHHHHHHHHHHHHcC--CCCCEEEEcCCchhhHHHHHHHHHhhcC
Q 009217 137 S-GIGVTFIQPLHYSSFFNRE--SVYGYSDDFERFTYFSRASLDYIVKSR--KQPDVLHIHNWETAIVGPLFWDIFVKQG 211 (540)
Q Consensus 137 ~-gv~v~~i~~~~~~~~~~~~--~~y~~~~~~~r~~~~~~~~~~~~~~~~--~~pDIIH~h~~~~~~~~~~~~~~~~~~~ 211 (540)
+ |+++++++ ++.+|+|. ..|++.|+..||.+|++++++.+.... ..|||||+||||+++++.+++..+ ..
T Consensus 80 ~~~v~~~lid---~~~~f~r~~~~~~~~~d~~~Rf~~F~~a~~~~~~~~~~~~~pDIvH~hDWqt~L~~~~lk~~~--~~ 154 (487)
T COG0297 80 DGGVDLYLID---NPALFKRPDSTLYGYYDNAERFAFFSLAAAELAPLGLISWLPDIVHAHDWQTGLLPAYLKQRY--RS 154 (487)
T ss_pred cCCCcEEEec---ChhhcCccccccCCCCcHHHHHHHHHHHHHHHhhhcCCCCCCCEEEeecHHHHHHHHHHhhcc--cc
Confidence 3 39999998 46688873 678899999999999999999886644 589999999999999999987743 12
Q ss_pred CCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCC
Q 009217 212 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 291 (540)
Q Consensus 212 ~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 291 (540)
...+|.|+|+||+.+||.++......+|++...+. .+.++.+ ...+++|.++.+||.|++||++|++++..+.+|.
T Consensus 155 ~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~~~---~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~ 230 (487)
T COG0297 155 GYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLEFY---GQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGE 230 (487)
T ss_pred cccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceeeec---CcchhhhhhheeccEEEEECHHHHHhhccccccc
Confidence 36899999999999999999767788899876555 5666666 3589999999999999999999999999999999
Q ss_pred CchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHH
Q 009217 292 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLE 371 (540)
Q Consensus 292 gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~ 371 (540)
|+++.+.....+++.|.||+|.+.|+|.+|+++..+|+++.+..|..+|..+++++|++.+.+.|+++++||++.|||+|
T Consensus 231 gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~d 310 (487)
T COG0297 231 GLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLD 310 (487)
T ss_pred cchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchh
Confidence 99999998889999999999999999999999999999999988999999999999999777789999999999999999
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHH
Q 009217 372 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKA 451 (540)
Q Consensus 372 ~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEA 451 (540)
++++|+..+.+..++|+++|.| ++.+++.+..++++++ +++.+..++++...+.+|++||++++||++||||+++|+|
T Consensus 311 l~~~~i~~~l~~~~~~vilG~g-d~~le~~~~~la~~~~-~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~a 388 (487)
T COG0297 311 LLLEAIDELLEQGWQLVLLGTG-DPELEEALRALASRHP-GRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYA 388 (487)
T ss_pred HHHHHHHHHHHhCceEEEEecC-cHHHHHHHHHHHHhcC-ceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHH
Confidence 9999999999989999999988 7899999999999997 5888888999999999999999999999999999999999
Q ss_pred HhcCCceEEEecCCCccccceecc-CC--ccccceeecCCCCHHHHHHHHHHHh---cC-HHHHHHHHHHHHhccCChHH
Q 009217 452 LKYGAAPIAVTSSDIEFRHFAEFD-HE--STRFSRFISSTFGNISLSQALEEIK---NN-PLSWKRKIKDAMLQDFSWDA 524 (540)
Q Consensus 452 ma~G~pvI~~~~~~gg~~e~v~~~-~~--~~g~~G~l~~~~d~~~la~ai~~l~---~~-~~~~~~~~~~a~~~~fsw~~ 524 (540)
|++|++||++.+ ||++|+|.+- .. ....|||+|.+.++++|+.+|.+.. .+ +..|+.+..++|..+|||+.
T Consensus 389 mryGtvpIv~~t--GGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~~ 466 (487)
T COG0297 389 MRYGTLPIVRET--GGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWDL 466 (487)
T ss_pred HHcCCcceEccc--CCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCchh
Confidence 999999999999 9999998642 11 1235689999889998888877643 34 44599999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 009217 525 DCNDIHISAYTAIKN 539 (540)
Q Consensus 525 ~a~~~y~~lY~~l~~ 539 (540)
.|.+ |.++|+.+++
T Consensus 467 sa~~-y~~lY~~~~~ 480 (487)
T COG0297 467 SAKE-YVELYKPLLS 480 (487)
T ss_pred HHHH-HHHHHHHHhc
Confidence 9999 7999999865
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=5e-68 Score=565.24 Aligned_cols=467 Identities=28% Similarity=0.443 Sum_probs=393.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+||+|++|+.++||+++++.+|+++|+++||+|+|++|.|++.......... ....+.+.+++....+++|...++
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLL-VLRLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeE-EEEEEeeccCCceeEEEEEEEEeC
Confidence 6999999999999999999999999999999999999999999986544322222 223445677888889999999999
Q ss_pred CeeEEEEccCCCCCCCCCCC-----CCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCC
Q 009217 138 GIGVTFIQPLHYSSFFNRES-----VYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGL 212 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~-----~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~ 212 (540)
|+++|++++ +.++.+.. .++|.++..||.+|++++++++++++.+|||||+|+|++++++.+++..+....+
T Consensus 80 gv~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~~~~~~l~~~~~~~~~ 156 (476)
T cd03791 80 GVPVYFLDN---PDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTGLVPALLKEKYADPFF 156 (476)
T ss_pred CceEEEEcC---hHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHHHHHHHHHHhhccccC
Confidence 999999984 33454433 4678889999999999999999887789999999999999998888765432223
Q ss_pred CCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCC
Q 009217 213 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 292 (540)
Q Consensus 213 ~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~g 292 (540)
.++|+|+|+|++.+++.++...+..++............. .+..+++++.++..||.|++||+.+++++....+|.|
T Consensus 157 ~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~g 233 (476)
T cd03791 157 KNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLE---FYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEG 233 (476)
T ss_pred CCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccc---cCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcc
Confidence 5899999999999998777665555554331111111122 2246789999999999999999999999988777888
Q ss_pred chHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHH
Q 009217 293 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 372 (540)
Q Consensus 293 l~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~ 372 (540)
++..+..+..++.+|+||+|.+.|+|..++.++..|+.+.+.++..++..+++++|++.+++.++++|+||+.++||++.
T Consensus 234 l~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~ 313 (476)
T cd03791 234 LDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDL 313 (476)
T ss_pred hHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHH
Confidence 88888777899999999999999999999888888988888899999999999999975556799999999999999999
Q ss_pred HHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHH
Q 009217 373 LKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 452 (540)
Q Consensus 373 Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAm 452 (540)
|++|++.+.+.+++|+++|+|+ +.+.+.++++++++. +++.|++++++++.+.+|++||++++||.+||||++++|||
T Consensus 314 li~a~~~l~~~~~~lvi~G~g~-~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAm 391 (476)
T cd03791 314 LLEALPELLELGGQLVILGSGD-PEYEEALRELAARYP-GRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAM 391 (476)
T ss_pred HHHHHHHHHHcCcEEEEEecCC-HHHHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHh
Confidence 9999999987789999999774 556778888888764 78999999998888899999999999999999999999999
Q ss_pred hcCCceEEEecCCCccccceeccCCc-cccceeecCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHhccCChHHHHHH
Q 009217 453 KYGAAPIAVTSSDIEFRHFAEFDHES-TRFSRFISSTFGNISLSQALEEIKN---NPLSWKRKIKDAMLQDFSWDADCND 528 (540)
Q Consensus 453 a~G~pvI~~~~~~gg~~e~v~~~~~~-~g~~G~l~~~~d~~~la~ai~~l~~---~~~~~~~~~~~a~~~~fsw~~~a~~ 528 (540)
+||+|||++++ ||++|+|.+..+. ...+|+++++.|+++|+++|.++++ +++.|.++++++++.+|||+.++++
T Consensus 392 a~G~pvI~~~~--gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~fsw~~~a~~ 469 (476)
T cd03791 392 RYGTVPIVRAT--GGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAMAQDFSWDRSAKE 469 (476)
T ss_pred hCCCCCEECcC--CCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhccCCChHHHHHH
Confidence 99999999999 9999999743210 1126899999999999999998764 7899999999999899999999999
Q ss_pred HHHHHHHH
Q 009217 529 IHISAYTA 536 (540)
Q Consensus 529 ~y~~lY~~ 536 (540)
|+++|++
T Consensus 470 -~~~~y~~ 476 (476)
T cd03791 470 -YLELYRS 476 (476)
T ss_pred -HHHHHhC
Confidence 6999973
No 9
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=7.8e-47 Score=413.15 Aligned_cols=455 Identities=14% Similarity=0.137 Sum_probs=298.4
Q ss_pred HHhccCCCCCCCceEEEEEeccccc---------cccccHHHHHhHHHHHHHHcC--CeEEEEeecCCC--CccccccCc
Q 009217 45 LRRFGSGSKKNGFHIIHICTEMDPL---------VSIGSLASYVTGLSGALQRKG--HLVEVILPKYAC--MNLDGVQGL 111 (540)
Q Consensus 45 ~~~~~~~~~~~~mkIl~i~~e~~P~---------~~~GG~~~~v~~L~~~L~~~G--h~V~vi~p~~~~--~~~~~~~~l 111 (540)
+..+....+.++|.|++|+.+-.|. ..+||..+||.+|+++|+++| |+|+|+|..... .+.++-...
T Consensus 158 ~~~~~~~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~ 237 (1050)
T TIGR02468 158 METWSDQQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPT 237 (1050)
T ss_pred hhcchhhcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcc
Confidence 4456666788899999999875541 457999999999999999998 899999965432 111110111
Q ss_pred ceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH----------
Q 009217 112 REIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVK---------- 181 (540)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~---------- 181 (540)
..+.. ....+... .....+|+.+++++.-....|..+..++.+ ..-|...+++.+.+
T Consensus 238 e~~~~---~~~~~~~~----~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~------l~ef~d~~l~~~~~~~~~~~~~~~ 304 (1050)
T TIGR02468 238 EMLTP---RSSENDGD----EMGESSGAYIIRIPFGPRDKYIPKEELWPY------IPEFVDGALSHIVNMSKVLGEQIG 304 (1050)
T ss_pred ccccc---cccccccc----cccCCCCeEEEEeccCCCCCCcCHHHHHHH------HHHHHHHHHHHHHhhhhhhhhhhc
Confidence 00000 00000000 001246888888863111123333322222 23444555555432
Q ss_pred --cCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCC-CccccCCCccccCCCCCc
Q 009217 182 --SRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGL-DPARLHRPDRLQDNTKTH 258 (540)
Q Consensus 182 --~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~ 258 (540)
....|||||+|+|.++.++..++. ..++|+|+|.|.+.... ...+...|. +.... -..|....
T Consensus 305 ~~~~~~pDvIHaHyw~sG~aa~~L~~------~lgVP~V~T~HSLgr~K---~~~ll~~g~~~~~~~-----~~~y~~~~ 370 (1050)
T TIGR02468 305 SGHPVWPYVIHGHYADAGDSAALLSG------ALNVPMVLTGHSLGRDK---LEQLLKQGRMSKEEI-----NSTYKIMR 370 (1050)
T ss_pred cccCCCCCEEEECcchHHHHHHHHHH------hhCCCEEEECccchhhh---hhhhccccccccccc-----ccccchHH
Confidence 112499999999999999888865 37999999999753110 000000111 00000 00111112
Q ss_pred cchhhhHHHhhccceeeccccchhhhhhcccC--CCchHHhh-----------hccCceEEeccCCCCCCCCCCCCcccc
Q 009217 259 LVNILKGGVVYSNKVVIVSSMHSKGRIIRSLS--HGLESTLA-----------IHQDKLLVAPCGFDSSTWDPSNDKFLT 325 (540)
Q Consensus 259 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~--~gl~~~l~-----------~~~~ki~vI~nGvd~~~~~p~~~~~l~ 325 (540)
.+.....++..||.||++|+..++++...+.+ .+|...|. ....++.|||||||++.|.|.....-.
T Consensus 371 Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~ 450 (1050)
T TIGR02468 371 RIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDG 450 (1050)
T ss_pred HHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccc
Confidence 34566778999999999999888765432110 00111111 012499999999999999985311000
Q ss_pred cccCccc--ccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--c--CcEEEEEecCCCh---
Q 009217 326 ENYCAED--MKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--R--GIQFVFTGTNKLP--- 396 (540)
Q Consensus 326 ~~~~~~~--~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~--~~~lvi~G~g~~~--- 396 (540)
..-..++ ..........+++.+ .. ++.|+|+|+||+.++||++.|++|+..+.+ . ++. +|+|.+++.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~l~r~~-~~--pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l 526 (1050)
T TIGR02468 451 ETEGNEEHPAKPDPPIWSEIMRFF-TN--PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEM 526 (1050)
T ss_pred hhcccccccccccchhhHHHHhhc-cc--CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhh
Confidence 0000000 000000112233333 22 346899999999999999999999998864 2 444 456755421
Q ss_pred -----hHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcC----CEEEECCCCCCCchHHHHHHhcCCceEEEecCCC
Q 009217 397 -----SASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGS----DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDI 466 (540)
Q Consensus 397 -----~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~a----Di~v~PS~~E~fglv~lEAma~G~pvI~~~~~~g 466 (540)
.....++.++++++. ++|.|.+..+.++++.+|+.| |+||+||.+||||++++||||||+|||+|+. |
T Consensus 527 ~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdv--G 604 (1050)
T TIGR02468 527 SSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKN--G 604 (1050)
T ss_pred hccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCC--C
Confidence 123457778888875 899999888888889999887 6999999999999999999999999999998 9
Q ss_pred ccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHh
Q 009217 467 EFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 467 g~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l~ 538 (540)
|++|+|. +|.+|+++++.|+++|+++|..+++|++++++|++++++ ++|||+.++++ |++.|..++
T Consensus 605 G~~EII~-----~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~-yl~~i~~~~ 672 (1050)
T TIGR02468 605 GPVDIHR-----VLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKT-YLSRIASCR 672 (1050)
T ss_pred CcHHHhc-----cCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHh
Confidence 9999997 466789999999999999999999999999999998875 68999999999 699988764
No 10
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=1.7e-46 Score=403.55 Aligned_cols=451 Identities=11% Similarity=0.108 Sum_probs=291.7
Q ss_pred hhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccc----cc---cccccHHHHHhHHHHHH--------HHcCC---
Q 009217 30 FADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMD----PL---VSIGSLASYVTGLSGAL--------QRKGH--- 91 (540)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~----P~---~~~GG~~~~v~~L~~~L--------~~~Gh--- 91 (540)
..++.+..|.. +|.+|+..- .+.|||++|+.+.+ |. ..+||..+||.+|+++| +++||
T Consensus 233 l~~~~~~p~~~---~~e~f~~~~-p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~ 308 (784)
T TIGR02470 233 LDDLLEAPDPS---VLEAFLGRI-PMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEIT 308 (784)
T ss_pred HHHHHhCCChh---HHHHHHhhC-CccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44677777777 444555332 23499999999872 22 23799999999999985 68999
Q ss_pred -eEEEEeecCCCCccc-cccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCC-----CCCCCCCCCCCCCCCh
Q 009217 92 -LVEVILPKYACMNLD-GVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLH-----YSSFFNRESVYGYSDD 164 (540)
Q Consensus 92 -~V~vi~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~-----~~~~~~~~~~y~~~~~ 164 (540)
+|+|+|...+..... .-..+..+ ...+|+.+.+++.-. .+.|..+..++.|
T Consensus 309 ~~V~I~TR~~~~~~~~~~~~~~e~~-------------------~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~--- 366 (784)
T TIGR02470 309 PKILIVTRLIPDAEGTTCNQRLEKV-------------------YGTEHAWILRVPFRTENGIILRNWISRFEIWPY--- 366 (784)
T ss_pred ceEEEEecCCCCccccccccccccc-------------------cCCCceEEEEecCCCCcccccccccCHHHHHHH---
Confidence 777998654422110 00000000 012466776665211 0112222222221
Q ss_pred hHHHHHHHHHHHHHHHH-cCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCcc
Q 009217 165 FERFTYFSRASLDYIVK-SRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPA 243 (540)
Q Consensus 165 ~~r~~~~~~~~~~~~~~-~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~ 243 (540)
...|...+.+.+.. .+.+|||||+|.|.+++++.+++. ..++|.|+|.|.+..... ...+..+.
T Consensus 367 ---l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~------~lgVP~v~t~HsL~~~K~------~~~g~~~~ 431 (784)
T TIGR02470 367 ---LETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLAR------KLGVTQCTIAHALEKTKY------PDSDIYWQ 431 (784)
T ss_pred ---HHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHH------hcCCCEEEECCcchhhcc------cccccccc
Confidence 23445566655543 356899999999999999877765 379999999998643211 01111111
Q ss_pred ccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCC---------CchHH---hhhccCceEEeccCC
Q 009217 244 RLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH---------GLEST---LAIHQDKLLVAPCGF 311 (540)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~---------gl~~~---l~~~~~ki~vI~nGv 311 (540)
. ++. .+.....+.....++..||.||+.|..........-..+ +|... ...+..|+.+||+|+
T Consensus 432 ~---~e~--~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGV 506 (784)
T TIGR02470 432 E---FED--KYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGA 506 (784)
T ss_pred c---chh--HHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCc
Confidence 0 000 000000122244678889999999964322110000000 01100 011457999999999
Q ss_pred CCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEE
Q 009217 312 DSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVF 389 (540)
Q Consensus 312 d~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi 389 (540)
|.+.|.|.++..-...--.+.++..--++...++.+|+..+++.|+|+++||++++||++.|++|+.++.. .+++|+|
T Consensus 507 D~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVI 586 (784)
T TIGR02470 507 DESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVV 586 (784)
T ss_pred ChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEE
Confidence 99999886421100000000000011134455678887655677999999999999999999999987653 4699999
Q ss_pred EecCCC------hh---HHHHHHHHHHHhCC-CcEEEEEec-ChHHHHHHHh----cCCEEEECCCCCCCchHHHHHHhc
Q 009217 390 TGTNKL------PS---ASRALVSFQEELKD-GIVIFVDSY-DDALLHLIFS----GSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 390 ~G~g~~------~~---~~~~l~~l~~~~~~-~~v~f~~~~-~~~~~~~~~~----~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
+|.+.+ .+ ..+.+.+++++++. ++|+|+|.. +.....++|+ ++|+||+||++||||++++|||+|
T Consensus 587 VGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAc 666 (784)
T TIGR02470 587 VAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTC 666 (784)
T ss_pred EeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHc
Confidence 995532 11 23467778888874 899998764 3333334443 468999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh----cCHHHHHHHHHHHHh---ccCChHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK----NNPLSWKRKIKDAML---QDFSWDADCN 527 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~----~~~~~~~~~~~~a~~---~~fsw~~~a~ 527 (540)
|+|||+|++ ||++|+|. +|.||+++++.|+++++++|..++ +||+.|++++++|++ ++|||+.+++
T Consensus 667 GlPVVAT~~--GG~~EiV~-----dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~ 739 (784)
T TIGR02470 667 GLPTFATRF--GGPLEIIQ-----DGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSE 739 (784)
T ss_pred CCCEEEcCC--CCHHHHhc-----CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999 99999998 467789999999999999999875 699999999999875 7899999999
Q ss_pred HHHHHHH
Q 009217 528 DIHISAY 534 (540)
Q Consensus 528 ~~y~~lY 534 (540)
++ ..+.
T Consensus 740 ~l-l~l~ 745 (784)
T TIGR02470 740 RL-LTLA 745 (784)
T ss_pred HH-HHHH
Confidence 94 7664
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.7e-45 Score=386.93 Aligned_cols=404 Identities=14% Similarity=0.175 Sum_probs=270.7
Q ss_pred eEEEEEecc----cc-----ccccccHHHHHhHHHHHHHHcCC--eEEEEeecCCCCc--cccccCcceeeeeeeeecCC
Q 009217 58 HIIHICTEM----DP-----LVSIGSLASYVTGLSGALQRKGH--LVEVILPKYACMN--LDGVQGLREIKAECYSYFNG 124 (540)
Q Consensus 58 kIl~i~~e~----~P-----~~~~GG~~~~v~~L~~~L~~~Gh--~V~vi~p~~~~~~--~~~~~~l~~~~~~~~~~~~~ 124 (540)
+|++++.+- +| ....||+++++.+|+++|+++|| +|+|+|..++... .++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~--------------- 66 (439)
T TIGR02472 2 YLLLLSLHGLIRGHDLELGRDADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQ--------------- 66 (439)
T ss_pred eEEEEeCCcCCCCCccccCCCCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCC---------------
Confidence 566666654 22 13579999999999999999997 9999997654311 11000
Q ss_pred eeeeeEEEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChh-HHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHH
Q 009217 125 QLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDF-ERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLF 203 (540)
Q Consensus 125 ~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~-~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~ 203 (540)
.+....+|+++++++.. + + .+.-.... .....|+..+.+.+++...+|||||+|+|.+++++.++
T Consensus 67 ------~~~~~~~gv~v~r~~~~--~----~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~ 132 (439)
T TIGR02472 67 ------PIERIAPGARIVRLPFG--P----R--RYLRKELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARL 132 (439)
T ss_pred ------CeeEeCCCcEEEEecCC--C----C--CCcChhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHH
Confidence 01123578999888521 0 0 01000011 11234556666777654458999999998877776665
Q ss_pred HHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhh
Q 009217 204 WDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKG 283 (540)
Q Consensus 204 ~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~ 283 (540)
+. ..++|+|+|+|+..... ...+...+.....+. . .+.........+..++.+|.|+++|+....+
T Consensus 133 ~~------~~~~p~V~t~H~~~~~~---~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 198 (439)
T TIGR02472 133 SR------LLGVPLIFTGHSLGREK---RRRLLAAGLKPQQIE---K--QYNISRRIEAEEETLAHASLVITSTHQEIEE 198 (439)
T ss_pred HH------HhCCCEEEecccccchh---hhhcccCCCChhhhh---h--hcchHHHHHHHHHHHHhCCEEEECCHHHHHH
Confidence 44 26789999999753210 000001111111000 0 0000011234567788999999998754433
Q ss_pred hhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEec
Q 009217 284 RIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFS 363 (540)
Q Consensus 284 ~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgr 363 (540)
......+ .+++|+.+||||+|++.|.|..... .....+..+ ++++.+. +.++++|+||
T Consensus 199 ~~~~~~~--------~~~~ki~vIpnGvd~~~f~~~~~~~-----------~~~~~~~~~-~~~~~~~--~~~~i~~vGr 256 (439)
T TIGR02472 199 QYALYDS--------YQPERMQVIPPGVDLSRFYPPQSSE-----------ETSEIDNLL-APFLKDP--EKPPILAISR 256 (439)
T ss_pred HHHhccC--------CCccceEEECCCcChhhcCCCCccc-----------cchhHHHHH-Hhhcccc--CCcEEEEEcC
Confidence 2211111 2468999999999999988752110 001112222 2334332 3478999999
Q ss_pred ccccCCHHHHHHHHHHHH--hcCcEEE-EEecCCCh-hH-------HHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhc
Q 009217 364 DVSDVFLENLKAVVRGAK--MRGIQFV-FTGTNKLP-SA-------SRALVSFQEELKD-GIVIFVDSYDDALLHLIFSG 431 (540)
Q Consensus 364 l~~~KG~~~Li~A~~~l~--~~~~~lv-i~G~g~~~-~~-------~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~ 431 (540)
+.++||++.|++|+..+. +...+++ ++|+|++. .+ .+.+..++++++. ++|+|.+.++.++++.+|++
T Consensus 257 l~~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~ 336 (439)
T TIGR02472 257 PDRRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRL 336 (439)
T ss_pred CcccCCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHH
Confidence 999999999999998643 2234554 56766431 11 1234455666654 78999988888888899987
Q ss_pred C----CEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHH
Q 009217 432 S----DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS 507 (540)
Q Consensus 432 a----Di~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~ 507 (540)
| |+||+||.+|+||++++||||||+|||+|+. ||++|++. +|.+|+++++.|+++|+++|..+++|++.
T Consensus 337 a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~--gg~~eiv~-----~~~~G~lv~~~d~~~la~~i~~ll~~~~~ 409 (439)
T TIGR02472 337 AARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD--GGPRDIIA-----NCRNGLLVDVLDLEAIASALEDALSDSSQ 409 (439)
T ss_pred HhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC--CCcHHHhc-----CCCcEEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 7 9999999999999999999999999999999 99999997 35668999999999999999999999999
Q ss_pred HHHHHHHHHh---ccCChHHHHHHHHHHHH
Q 009217 508 WKRKIKDAML---QDFSWDADCNDIHISAY 534 (540)
Q Consensus 508 ~~~~~~~a~~---~~fsw~~~a~~~y~~lY 534 (540)
+++|++++++ ++|||+.++.+ |+++.
T Consensus 410 ~~~~~~~a~~~~~~~fsw~~~~~~-~~~l~ 438 (439)
T TIGR02472 410 WQLWSRNGIEGVRRHYSWDAHVEK-YLRIL 438 (439)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH-HHHHh
Confidence 9999998865 78999999999 57764
No 12
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=4e-45 Score=388.63 Aligned_cols=460 Identities=16% Similarity=0.168 Sum_probs=350.4
Q ss_pred EEEEEeccc-----cccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCcccc-c---------------cC--ccee-
Q 009217 59 IIHICTEMD-----PLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDG-V---------------QG--LREI- 114 (540)
Q Consensus 59 Il~i~~e~~-----P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~-~---------------~~--l~~~- 114 (540)
|+++|.||. |. ..||+|+......++++..|...+.+.-.|...--++ + .. +..+
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 567777764 54 5799999999999999999999999886654310000 0 00 0000
Q ss_pred -----eeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCC-CCCCCCCC---CCCCCCChhHHH---HHHHHHHHHHHHHc
Q 009217 115 -----KAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLH-YSSFFNRE---SVYGYSDDFERF---TYFSRASLDYIVKS 182 (540)
Q Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~-~~~~~~~~---~~y~~~~~~~r~---~~~~~~~~~~~~~~ 182 (540)
...+.+.++|.....++|...++++++|+++... ...+|.|. .+|+ .|...|+ .+|+++.++.++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~-~D~~~R~~Qe~fl~~a~l~~l~~l 158 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYG-GDKEMRIAQEIVLGIGGVRALRAL 158 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHc
Confidence 0135678888888899999999999999998431 12366665 4565 3444555 99999999999888
Q ss_pred CCCCCEEEEcCCchhhHHHHHHHHHhhcC--------CCCCceEEEecCCCCCCC--CChhhhh--------hcCCCccc
Q 009217 183 RKQPDVLHIHNWETAIVGPLFWDIFVKQG--------LEGTRILLSCHNLNSLCL--EHPDKLA--------LCGLDPAR 244 (540)
Q Consensus 183 ~~~pDIIH~h~~~~~~~~~~~~~~~~~~~--------~~~~p~V~T~H~~~~~~~--~~~~~l~--------~~g~~~~~ 244 (540)
+.+|||||+|+||++++++.+.+.....+ ..+.++|+|+|++.++|. ++...+. .+|++...
T Consensus 159 ~~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~ 238 (601)
T TIGR02094 159 GIDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQ 238 (601)
T ss_pred CCCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHH
Confidence 89999999999999999887533211100 125789999999999997 7766653 35666544
Q ss_pred cCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCccc
Q 009217 245 LHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFL 324 (540)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l 324 (540)
+.. ...+.+.....+|+++.++..||.|++||+.+++ +...-++ .+.+.+.....++..|.||||+..|.|.+++.+
T Consensus 239 ~~~-~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~-v~~~l~~-~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l 315 (601)
T TIGR02094 239 LLA-LGRENPDDPEPFNMTVLALRLSRIANGVSKLHGE-VSRKMWQ-FLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDL 315 (601)
T ss_pred HHh-hhhhccCccCceeHHHHHHHhCCeeeeecHHHHH-HHHHHHH-hhhhhcccccCCccceeCCccccccCCHHHHHH
Confidence 321 1122221124689999999999999999999987 2221111 122223334567999999999999999999999
Q ss_pred ccccCccc----------------------ccCcHHHHHHHHH---------------------HhCCCCCCCceEEEEE
Q 009217 325 TENYCAED----------------------MKGKTVCKVTLQQ---------------------QLGLSKDASTIVVGCI 361 (540)
Q Consensus 325 ~~~~~~~~----------------------~~~k~~~~~~lr~---------------------~~gl~~~~~~~lv~~v 361 (540)
..+|..++ +++|..+|.+|.+ ++|++.+++.|+++++
T Consensus 316 ~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v 395 (601)
T TIGR02094 316 YERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFA 395 (601)
T ss_pred HHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEE
Confidence 99999877 4789999999887 4677677788999999
Q ss_pred ecccccCCHHHHHHHHHHHHh------cCcEEEEEecCCChh------HHHHHHHHHHH--hCCCcEEEEEecChHHHHH
Q 009217 362 FSDVSDVFLENLKAVVRGAKM------RGIQFVFTGTNKLPS------ASRALVSFQEE--LKDGIVIFVDSYDDALLHL 427 (540)
Q Consensus 362 grl~~~KG~~~Li~A~~~l~~------~~~~lvi~G~g~~~~------~~~~l~~l~~~--~~~~~v~f~~~~~~~~~~~ 427 (540)
+|++.+||++++++++.++.+ .++|||++|.| +|. +.+.+.++++. ++ ++|.|+..|+.+..+.
T Consensus 396 ~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka-~p~d~~gk~~i~~i~~la~~~~~~-~kv~f~~~Yd~~lA~~ 473 (601)
T TIGR02094 396 RRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKA-HPADGEGKEIIQRIVEFSKRPEFR-GRIVFLENYDINLARY 473 (601)
T ss_pred EcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEec-CcccchHHHHHHHHHHHHhcccCC-CCEEEEcCCCHHHHHH
Confidence 999999999999999988863 47999999977 454 77888888887 54 7999999999999999
Q ss_pred HHhcCCEEEE-CCC-CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCC------------CCHHH
Q 009217 428 IFSGSDIILC-HSF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST------------FGNIS 493 (540)
Q Consensus 428 ~~~~aDi~v~-PS~-~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~------------~d~~~ 493 (540)
++++||++++ ||+ +||||++.|.||..|.+-+++-. |+..|..+ |.|||.|.+ .|+++
T Consensus 474 i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~D--G~~~E~~~------~~nGf~f~~~~~~~~~~~~d~~da~~ 545 (601)
T TIGR02094 474 LVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILD--GWWGEGYD------GDNGWAIGDGEEYDDEEEQDRLDAEA 545 (601)
T ss_pred HhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeeccc--CcccccCC------CCcEEEECCCccccccccccCCCHHH
Confidence 9999999999 999 99999999999999998888776 77666642 456789884 77777
Q ss_pred HHHHHHHHh-----cC-----HHHHHHHHHHHHhc---cCChHHHHHHHHHHHH
Q 009217 494 LSQALEEIK-----NN-----PLSWKRKIKDAMLQ---DFSWDADCNDIHISAY 534 (540)
Q Consensus 494 la~ai~~l~-----~~-----~~~~~~~~~~a~~~---~fsw~~~a~~~y~~lY 534 (540)
|-++|++.+ ++ |+.|.++.++||.. +|||++|+++ |.++|
T Consensus 546 l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~-Y~~~y 598 (601)
T TIGR02094 546 LYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVRE-YVDKF 598 (601)
T ss_pred HHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHH-HHHHh
Confidence 777775422 43 66799999999986 8999999999 57776
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=1.8e-44 Score=376.30 Aligned_cols=388 Identities=18% Similarity=0.205 Sum_probs=279.1
Q ss_pred EEEEEecccccc-----ccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEE
Q 009217 59 IIHICTEMDPLV-----SIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI 133 (540)
Q Consensus 59 Il~i~~e~~P~~-----~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 133 (540)
|++++.+..|.. ..||++.++.+|+++|.++||+|+|+|+........ ..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~----~~--------------------- 55 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP----VV--------------------- 55 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC----cc---------------------
Confidence 567777766642 359999999999999999999999999764321111 00
Q ss_pred EEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHH-HHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCC
Q 009217 134 GVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASL-DYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGL 212 (540)
Q Consensus 134 ~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~-~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~ 212 (540)
...+|++++.+... .+... ........+..|....+ .++++...+|||||+|+|.+++++.+++. .
T Consensus 56 ~~~~~~~v~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~------~ 122 (405)
T TIGR03449 56 EVAPGVRVRNVVAG---PYEGL----DKEDLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRD------R 122 (405)
T ss_pred ccCCCcEEEEecCC---CcccC----CHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHH------h
Confidence 01357777776421 11100 00000111122333333 33333345899999999877776665543 2
Q ss_pred CCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCC
Q 009217 213 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 292 (540)
Q Consensus 213 ~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~g 292 (540)
.++|+|+|+|++.... ...+..... +... ......+..++.+|.++++|+...+++... ++
T Consensus 123 ~~~p~v~t~h~~~~~~--------~~~~~~~~~--~~~~------~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~-~~-- 183 (405)
T TIGR03449 123 WGVPLVHTAHTLAAVK--------NAALADGDT--PEPE------ARRIGEQQLVDNADRLIANTDEEARDLVRH-YD-- 183 (405)
T ss_pred cCCCEEEeccchHHHH--------HHhccCCCC--CchH------HHHHHHHHHHHhcCeEEECCHHHHHHHHHH-cC--
Confidence 6789999999753210 000000000 0000 001223456789999999999877765432 11
Q ss_pred chHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHH
Q 009217 293 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 372 (540)
Q Consensus 293 l~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~ 372 (540)
...+++.+||||+|.+.|.|. .+...+++++++. +.++++|+||+.+.||++.
T Consensus 184 ------~~~~ki~vi~ngvd~~~~~~~-------------------~~~~~~~~~~~~~--~~~~i~~~G~l~~~K~~~~ 236 (405)
T TIGR03449 184 ------ADPDRIDVVAPGADLERFRPG-------------------DRATERARLGLPL--DTKVVAFVGRIQPLKAPDV 236 (405)
T ss_pred ------CChhhEEEECCCcCHHHcCCC-------------------cHHHHHHhcCCCC--CCcEEEEecCCCcccCHHH
Confidence 145789999999999888664 2344667788764 3578999999999999999
Q ss_pred HHHHHHHHHh--cC--cEEEEEecCCC-h-hHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCc
Q 009217 373 LKAVVRGAKM--RG--IQFVFTGTNKL-P-SASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLL 445 (540)
Q Consensus 373 Li~A~~~l~~--~~--~~lvi~G~g~~-~-~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fg 445 (540)
|++|++.+.+ .+ ++|+|+|.+.. . ...++++++++.++. ++|+|+|..+.+++..+|+.||++++||..|+||
T Consensus 237 li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g 316 (405)
T TIGR03449 237 LLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFG 316 (405)
T ss_pred HHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcC
Confidence 9999998865 33 89999994321 1 345678888888764 6899998888888899999999999999999999
Q ss_pred hHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChH
Q 009217 446 QVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWD 523 (540)
Q Consensus 446 lv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~ 523 (540)
++++|||++|+|||+++. ||.+|++. +|.+|+++++.|+++++++|.++++|++.+++++.++.+ ++|||+
T Consensus 317 ~~~lEAma~G~Pvi~~~~--~~~~e~i~-----~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~ 389 (405)
T TIGR03449 317 LVAMEAQACGTPVVAARV--GGLPVAVA-----DGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWA 389 (405)
T ss_pred hHHHHHHHcCCCEEEecC--CCcHhhhc-----cCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999998 99999987 356679999999999999999999999999999988865 789999
Q ss_pred HHHHHHHHHHHHHHh
Q 009217 524 ADCNDIHISAYTAIK 538 (540)
Q Consensus 524 ~~a~~~y~~lY~~l~ 538 (540)
.++++ |.++|+++.
T Consensus 390 ~~~~~-~~~~y~~~~ 403 (405)
T TIGR03449 390 ATADG-LLSSYRDAL 403 (405)
T ss_pred HHHHH-HHHHHHHHh
Confidence 99999 599999864
No 14
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.5e-44 Score=388.23 Aligned_cols=450 Identities=12% Similarity=0.125 Sum_probs=287.9
Q ss_pred hhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccc--cc-----cccccHHHHHhHHH--------HHHHHcCCeEE
Q 009217 30 FADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMD--PL-----VSIGSLASYVTGLS--------GALQRKGHLVE 94 (540)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~--P~-----~~~GG~~~~v~~L~--------~~L~~~Gh~V~ 94 (540)
..++.+..|.. +|.+|+..- .+-|+|++|+.+-+ |. ..+||.-+||.+++ ++|+++||+|+
T Consensus 257 l~~~~~~p~~~---~~e~f~~~~-p~~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~ 332 (815)
T PLN00142 257 LLDLLQAPDPS---TLEKFLGRI-PMVFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIK 332 (815)
T ss_pred HHHHHhCCChh---HHHHHHhhh-hHhHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44566777777 444454321 22389999998753 21 45799999998655 67888999875
Q ss_pred ----EEeecCCCCccc-cccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCCC----CCCCCCCCCCCCCChh
Q 009217 95 ----VILPKYACMNLD-GVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY----SSFFNRESVYGYSDDF 165 (540)
Q Consensus 95 ----vi~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~----~~~~~~~~~y~~~~~~ 165 (540)
|+|...+..... ....+..+ . ..+|+.+.+++.-.. +.+..+..++.|.
T Consensus 333 ~~v~i~TR~i~~~~~~~~~~~~e~v--------~-----------~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L--- 390 (815)
T PLN00142 333 PQILIVTRLIPDAKGTTCNQRLEKV--------S-----------GTEHSHILRVPFRTEKGILRKWISRFDVWPYL--- 390 (815)
T ss_pred ceeEEEEeccCCccCCcccCcceec--------c-----------CCCceEEEecCCCCCccccccccCHHHHHHHH---
Confidence 888644322111 00001000 0 023556666542111 1122222222222
Q ss_pred HHHHHHHHHHHHHHH-HcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccc
Q 009217 166 ERFTYFSRASLDYIV-KSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPAR 244 (540)
Q Consensus 166 ~r~~~~~~~~~~~~~-~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~ 244 (540)
..|...+.+.+. +.+.+|||||+|.|.+++++..++.. .++|.|+|.|.+..... ...+..+..
T Consensus 391 ---~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~------lgVP~v~T~HsL~k~K~------~~~~~~~~~ 455 (815)
T PLN00142 391 ---ETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKY------PDSDIYWKK 455 (815)
T ss_pred ---HHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHH------hCCCEEEEcccchhhhc------cccCCcccc
Confidence 234555665553 34567999999999999998888763 79999999997643111 011111110
Q ss_pred cCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhh------hcccCC---CchHHhh---hccCceEEeccCCC
Q 009217 245 LHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRI------IRSLSH---GLESTLA---IHQDKLLVAPCGFD 312 (540)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~------~~~~~~---gl~~~l~---~~~~ki~vI~nGvd 312 (540)
. +. .|.....+.....++..||.||+.|......+. .+..+. ||..+++ ....|+.+||+|+|
T Consensus 456 ~---e~--~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD 530 (815)
T PLN00142 456 F---DD--KYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGAD 530 (815)
T ss_pred c---ch--hhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCC
Confidence 0 00 000001233456678899999988865543221 000010 1111110 12459999999999
Q ss_pred CCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEE
Q 009217 313 SSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFT 390 (540)
Q Consensus 313 ~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~ 390 (540)
...|.|..+..-....-.+.++....+....++.+|+..+++.++|+++||++++||++.|++|+..+.+ .+++|+|+
T Consensus 531 ~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIV 610 (815)
T PLN00142 531 MSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVV 610 (815)
T ss_pred hhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9999875421000000001111222233344567887555567899999999999999999999998764 47999999
Q ss_pred ecCCCh----h--H---HHHHHHHHHHhCC-CcEEEEEecC----hHHHHHHHh-cCCEEEECCCCCCCchHHHHHHhcC
Q 009217 391 GTNKLP----S--A---SRALVSFQEELKD-GIVIFVDSYD----DALLHLIFS-GSDIILCHSFHDPLLQVPLKALKYG 455 (540)
Q Consensus 391 G~g~~~----~--~---~~~l~~l~~~~~~-~~v~f~~~~~----~~~~~~~~~-~aDi~v~PS~~E~fglv~lEAma~G 455 (540)
|+|.++ . . .+.+.+++++++. ++|+|++... .+++..+++ ++|+||+||.+|+||++++|||+||
T Consensus 611 Ggg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~G 690 (815)
T PLN00142 611 GGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCG 690 (815)
T ss_pred ECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcC
Confidence 965221 1 1 1346677888775 7899887542 234445555 5799999999999999999999999
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH----hcCHHHHHHHHHHHHh---ccCChHHHHHH
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI----KNNPLSWKRKIKDAML---QDFSWDADCND 528 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l----~~~~~~~~~~~~~a~~---~~fsw~~~a~~ 528 (540)
+|||+|++ ||++|+|. +|.+|+++++.|+++++++|..+ ++|++.|++|+++|++ ++|||+.++++
T Consensus 691 lPVVATdv--GG~~EIV~-----dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~r 763 (815)
T PLN00142 691 LPTFATCQ--GGPAEIIV-----DGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAER 763 (815)
T ss_pred CCEEEcCC--CCHHHHhc-----CCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999 99999998 57788999999999999998764 4799999999999865 78999999999
Q ss_pred HHHHH
Q 009217 529 IHISA 533 (540)
Q Consensus 529 ~y~~l 533 (540)
+ +++
T Consensus 764 l-l~L 767 (815)
T PLN00142 764 L-LTL 767 (815)
T ss_pred H-HHH
Confidence 4 765
No 15
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=1.9e-43 Score=366.38 Aligned_cols=374 Identities=18% Similarity=0.212 Sum_probs=271.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++|+..|+|. ..||.+.++.+|+++|.++ |+|+|++...+.. ..
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~-------------------------------~~ 47 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF-------------------------------DS 47 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh-------------------------------cC
Confidence 8999999988775 4699999999999999987 8888887543211 02
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
+|++++.+.+.. .+. ...... ..+..... .. ....+|||||+|+|.+++.+.+++. +.++|
T Consensus 48 ~~~~~~~~~~~~---~~~-----~~~~~~---~~~~~~~~-~~-~~~~~~divh~~~~~~~~~~~~~~~------~~~~p 108 (388)
T TIGR02149 48 EGLTVKGYRPWS---ELK-----EANKAL---GTFSVDLA-MA-NDPVDADVVHSHTWYTFLAGHLAKK------LYDKP 108 (388)
T ss_pred CCeEEEEecChh---hcc-----chhhhh---hhhhHHHH-Hh-hCCCCCCeEeecchhhhhHHHHHHH------hcCCC
Confidence 355555443110 000 000000 01111111 11 1135799999999877766554432 36899
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
+|+|+|+......+..... +.. ... ...+.+..++.+|.|+++|+..++.+.....+
T Consensus 109 ~v~~~h~~~~~~~~~~~~~---~~~---------~~~-----~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~------ 165 (388)
T TIGR02149 109 LVVTAHSLEPLRPWKEEQL---GGG---------YKL-----SSWAEKTAIEAADRVIAVSGGMREDILKYYPD------ 165 (388)
T ss_pred EEEEeeccccccccccccc---ccc---------hhH-----HHHHHHHHHhhCCEEEEccHHHHHHHHHHcCC------
Confidence 9999998643221110000 000 000 11245667889999999999988776542111
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
....++.+||||+|.+.|.|. .+..++++++++. +.++++|+||+.+.||++.|++|
T Consensus 166 --~~~~~i~vi~ng~~~~~~~~~-------------------~~~~~~~~~~~~~--~~~~i~~~Grl~~~Kg~~~li~a 222 (388)
T TIGR02149 166 --LDPEKVHVIYNGIDTKEYKPD-------------------DGNVVLDRYGIDR--SRPYILFVGRITRQKGVPHLLDA 222 (388)
T ss_pred --CCcceEEEecCCCChhhcCCC-------------------chHHHHHHhCCCC--CceEEEEEcccccccCHHHHHHH
Confidence 135789999999999888764 2345677888764 35789999999999999999999
Q ss_pred HHHHHhcCcEEEEEecCCC-hhHHHHHHHHHHHhCC--CcEEEEEe-cChHHHHHHHhcCCEEEECCCCCCCchHHHHHH
Q 009217 377 VRGAKMRGIQFVFTGTNKL-PSASRALVSFQEELKD--GIVIFVDS-YDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 452 (540)
Q Consensus 377 ~~~l~~~~~~lvi~G~g~~-~~~~~~l~~l~~~~~~--~~v~f~~~-~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAm 452 (540)
++++. .+++++++|.|++ +.+.+.+++....++. ++|.++++ ++.+++..+|++||++|+||.+|+||++++|||
T Consensus 223 ~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~ 301 (388)
T TIGR02149 223 VHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAM 301 (388)
T ss_pred HHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHH
Confidence 99875 4789999886653 3455677777666642 45777654 678888999999999999999999999999999
Q ss_pred hcCCceEEEecCCCccccceeccCCccccceeecCCCCH------HHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChH
Q 009217 453 KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGN------ISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 523 (540)
Q Consensus 453 a~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~------~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~ 523 (540)
+||+|||+++. ||.+|++.+ +.+|+++++.|+ ++|+++|.++++|++.+++|++++++ ++|||+
T Consensus 302 a~G~PvI~s~~--~~~~e~i~~-----~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 374 (388)
T TIGR02149 302 ACGTPVVASAT--GGIPEVVVD-----GETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWG 374 (388)
T ss_pred HcCCCEEEeCC--CCHHHHhhC-----CCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999998 999999973 456799999888 89999999999999999999998875 789999
Q ss_pred HHHHHHHHHHHHHH
Q 009217 524 ADCNDIHISAYTAI 537 (540)
Q Consensus 524 ~~a~~~y~~lY~~l 537 (540)
.++++ |.++|+++
T Consensus 375 ~~~~~-~~~~y~~~ 387 (388)
T TIGR02149 375 SIAKK-TVEMYRKV 387 (388)
T ss_pred HHHHH-HHHHHHhh
Confidence 99999 59999986
No 16
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2.1e-43 Score=373.90 Aligned_cols=378 Identities=15% Similarity=0.193 Sum_probs=266.3
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI 133 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 133 (540)
.++|||++++.. .|....||.+.++.+|+++|.++||+|+|+++.... ...
T Consensus 56 ~~~mrI~~~~~~-~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~-~~~--------------------------- 106 (465)
T PLN02871 56 SRPRRIALFVEP-SPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV-PQE--------------------------- 106 (465)
T ss_pred CCCceEEEEECC-cCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccc---------------------------
Confidence 778999999853 444467999999999999999999999999975432 110
Q ss_pred EEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCC
Q 009217 134 GVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 134 ~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~ 213 (540)
..|+.++.+.....+ ++.. ..+.+. +...+.+.+++ .+|||||+|+......+.++..+ ..
T Consensus 107 --~~g~~v~~~~~~~~~-~~~~-~~~~~~--------~~~~l~~~i~~--~kpDiIh~~~~~~~~~~~~~~ak-----~~ 167 (465)
T PLN02871 107 --FHGAKVIGSWSFPCP-FYQK-VPLSLA--------LSPRIISEVAR--FKPDLIHASSPGIMVFGALFYAK-----LL 167 (465)
T ss_pred --ccCceeeccCCcCCc-cCCC-ceeecc--------CCHHHHHHHHh--CCCCEEEECCCchhHHHHHHHHH-----Hh
Confidence 112332221100000 0100 000000 01123344443 68999999974322222222111 26
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCc
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 293 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl 293 (540)
++|+|+|+|+..... ...... ..+ .. ....+.+...+.+|.|+++|+..++.+.....
T Consensus 168 ~ip~V~~~h~~~~~~------~~~~~~--~~~-----~~-----~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~---- 225 (465)
T PLN02871 168 CVPLVMSYHTHVPVY------IPRYTF--SWL-----VK-----PMWDIIRFLHRAADLTLVTSPALGKELEAAGV---- 225 (465)
T ss_pred CCCEEEEEecCchhh------hhcccc--hhh-----HH-----HHHHHHHHHHhhCCEEEECCHHHHHHHHHcCC----
Confidence 899999999642100 000000 000 00 01123455677899999999988877654211
Q ss_pred hHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHH
Q 009217 294 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL 373 (540)
Q Consensus 294 ~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~L 373 (540)
.+.+++.+||||+|.+.|.|..+ +...++++.... ++.++++|+||+.++||++.|
T Consensus 226 -----~~~~kv~vi~nGvd~~~f~p~~~------------------~~~~~~~~~~~~-~~~~~i~~vGrl~~~K~~~~l 281 (465)
T PLN02871 226 -----TAANRIRVWNKGVDSESFHPRFR------------------SEEMRARLSGGE-PEKPLIVYVGRLGAEKNLDFL 281 (465)
T ss_pred -----CCcCeEEEeCCccCccccCCccc------------------cHHHHHHhcCCC-CCCeEEEEeCCCchhhhHHHH
Confidence 13578999999999998877521 123444443221 235789999999999999999
Q ss_pred HHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 374 KAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 374 i~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
+++++.+ .+++|+|+|+|+ ..++++++++. .+|+|+|..+.+++..+|+.||+||+||.+|+||++++|||+
T Consensus 282 i~a~~~~--~~~~l~ivG~G~---~~~~l~~~~~~---~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA 353 (465)
T PLN02871 282 KRVMERL--PGARLAFVGDGP---YREELEKMFAG---TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMA 353 (465)
T ss_pred HHHHHhC--CCcEEEEEeCCh---HHHHHHHHhcc---CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHH
Confidence 9999876 489999999875 45667776653 479999888888899999999999999999999999999999
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHH
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHI 531 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~ 531 (540)
||+|||+++. ||++|++.+.. .|.+|+++++.|+++|+++|..+++|++.+++|++++++ ++|||+.+++++ +
T Consensus 354 ~G~PVI~s~~--gg~~eiv~~~~--~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l-~ 428 (465)
T PLN02871 354 SGVPVVAARA--GGIPDIIPPDQ--EGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKL-R 428 (465)
T ss_pred cCCCEEEcCC--CCcHhhhhcCC--CCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHH-H
Confidence 9999999998 99999997421 256789999999999999999999999999999998865 789999999995 7
Q ss_pred H-HHHHHh
Q 009217 532 S-AYTAIK 538 (540)
Q Consensus 532 ~-lY~~l~ 538 (540)
+ +|+++.
T Consensus 429 ~~~Y~~~~ 436 (465)
T PLN02871 429 NEQYSAAI 436 (465)
T ss_pred HHHHHHHH
Confidence 6 798874
No 17
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.4e-43 Score=368.67 Aligned_cols=391 Identities=15% Similarity=0.090 Sum_probs=276.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec--CCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK--YACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
|||++|+..|+|. .||++.++.+|+++|.++||+|+|+|+. ++...... ... + .....+
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~--~~~----------~-----~~~~~~ 61 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGE--GYS----------A-----WRYRRE 61 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCc--ccc----------c-----ccceee
Confidence 8999999988885 6999999999999999999999999965 22211000 000 0 000112
Q ss_pred EEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHH---HHHHHHHHHH-HHHcCCCCCEEEEcCCch--hhHHHHHHHHHh
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERF---TYFSRASLDY-IVKSRKQPDVLHIHNWET--AIVGPLFWDIFV 208 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~---~~~~~~~~~~-~~~~~~~pDIIH~h~~~~--~~~~~~~~~~~~ 208 (540)
..+|+++++++.. .... .....|. ..|....... ++...++|||||+|.+.. +..+.++..
T Consensus 62 ~~~~i~v~r~~~~------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~--- 128 (412)
T PRK10307 62 SEGGVTVWRCPLY------VPKQ----PSGLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLAR--- 128 (412)
T ss_pred ecCCeEEEEcccc------CCCC----ccHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHH---
Confidence 3578888887521 0000 1111121 1122222222 222236899999997432 223233322
Q ss_pred hcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcc
Q 009217 209 KQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 288 (540)
Q Consensus 209 ~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~ 288 (540)
+.++|+|+++|++.... ....+...... +.. -...+.+..++.||.|+++|+...+.+...
T Consensus 129 ---~~~~~~v~~~~d~~~~~------~~~~~~~~~~~-----~~~----~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~- 189 (412)
T PRK10307 129 ---LSGARTWLHIQDYEVDA------AFGLGLLKGGK-----VAR----LATAFERSLLRRFDNVSTISRSMMNKAREK- 189 (412)
T ss_pred ---hhCCCEEEEeccCCHHH------HHHhCCccCcH-----HHH----HHHHHHHHHHhhCCEEEecCHHHHHHHHHc-
Confidence 36789999999753210 11111110000 000 011355667889999999999988876532
Q ss_pred cCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccC
Q 009217 289 LSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDV 368 (540)
Q Consensus 289 ~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~K 368 (540)
+ ....++.+||||+|.+.|.|.... .+..++++++++. +.++++|+||+.+.|
T Consensus 190 -~--------~~~~~i~vi~ngvd~~~~~~~~~~----------------~~~~~~~~~~~~~--~~~~i~~~G~l~~~k 242 (412)
T PRK10307 190 -G--------VAAEKVIFFPNWSEVARFQPVADA----------------DVDALRAQLGLPD--GKKIVLYSGNIGEKQ 242 (412)
T ss_pred -C--------CCcccEEEECCCcCHhhcCCCCcc----------------chHHHHHHcCCCC--CCEEEEEcCcccccc
Confidence 1 146789999999999888764210 2345677888864 357899999999999
Q ss_pred CHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCC---
Q 009217 369 FLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPL--- 444 (540)
Q Consensus 369 G~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~f--- 444 (540)
|++.|++|++.+.+ .+++|+|+|+|+ ..+++++++++++.++|+|+|..+.+++..+|++||++++||..|++
T Consensus 243 g~~~li~a~~~l~~~~~~~l~ivG~g~---~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~ 319 (412)
T PRK10307 243 GLELVIDAARRLRDRPDLIFVICGQGG---GKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLV 319 (412)
T ss_pred CHHHHHHHHHHhccCCCeEEEEECCCh---hHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCccccc
Confidence 99999999998754 479999999875 35678888887765789999888888899999999999999999985
Q ss_pred -chHHHHHHhcCCceEEEecCCCc--cccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---c
Q 009217 445 -LQVPLKALKYGAAPIAVTSSDIE--FRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---Q 518 (540)
Q Consensus 445 -glv~lEAma~G~pvI~~~~~~gg--~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~ 518 (540)
|..++|||+||+|||+++. || +.|++. .+|+++++.|+++|+++|.++++|++.+++|++++++ +
T Consensus 320 ~p~kl~eama~G~PVi~s~~--~g~~~~~~i~-------~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~ 390 (412)
T PRK10307 320 LPSKLTNMLASGRNVVATAE--PGTELGQLVE-------GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAER 390 (412)
T ss_pred CcHHHHHHHHcCCCEEEEeC--CCchHHHHHh-------CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 5557999999999999987 55 457775 1368999999999999999999999999999999875 6
Q ss_pred cCChHHHHHHHHHHHHHHHh
Q 009217 519 DFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 519 ~fsw~~~a~~~y~~lY~~l~ 538 (540)
+|||+.++++ |.++|+++.
T Consensus 391 ~fs~~~~~~~-~~~~~~~~~ 409 (412)
T PRK10307 391 TLDKENVLRQ-FIADIRGLV 409 (412)
T ss_pred HcCHHHHHHH-HHHHHHHHh
Confidence 8999999999 599999863
No 18
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=2.7e-42 Score=358.92 Aligned_cols=363 Identities=18% Similarity=0.219 Sum_probs=257.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++++..|.|. .||++.++..|+++|+++||+|+|+++.++..... . ...+
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-----~---------------------~~~~ 52 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI-----R---------------------YLTN 52 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc-----c---------------------cccC
Confidence 799999988884 69999999999999999999999999865421100 0 0124
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
|++++.++.. . +.+.... . ++..+...+.+.+. ..+|||||+|++.+.+....+.. .+..++|+
T Consensus 53 ~i~v~~~p~~---~-~~~~~~~--~----~~~~~~~~l~~~~~--~~~~DiIh~~~~~~~~~~~~~~~----~~~~~~~~ 116 (398)
T cd03796 53 GLKVYYLPFV---V-FYNQSTL--P----TFFGTFPLLRNILI--RERITIVHGHQAFSALAHEALLH----ARTMGLKT 116 (398)
T ss_pred ceeEEEecce---e-ccCCccc--c----chhhhHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHH----hhhcCCcE
Confidence 6677766421 0 1111001 0 00011122223333 36899999998654433111111 12368999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
|+|.|+..... ... . . ....+.+..++.+|.++++|+...+...... +
T Consensus 117 v~t~h~~~~~~--~~~--------~----------~----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~-~------- 164 (398)
T cd03796 117 VFTDHSLFGFA--DAS--------S----------I----HTNKLLRFSLADVDHVICVSHTSKENTVLRA-S------- 164 (398)
T ss_pred EEEeccccccc--chh--------h----------H----HhhHHHHHhhccCCEEEEecHhHhhHHHHHh-C-------
Confidence 99999742100 000 0 0 0012334557789999999998776543211 1
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
.+.+++.+||||+|.+.|.|..+. ..++.++++++||+.++||++.|++|+
T Consensus 165 -~~~~k~~vi~ngvd~~~f~~~~~~----------------------------~~~~~~~i~~~grl~~~Kg~~~li~a~ 215 (398)
T cd03796 165 -LDPERVSVIPNAVDSSDFTPDPSK----------------------------RDNDKITIVVISRLVYRKGIDLLVGII 215 (398)
T ss_pred -CChhhEEEEcCccCHHHcCCCccc----------------------------CCCCceEEEEEeccchhcCHHHHHHHH
Confidence 145789999999999888765210 012457899999999999999999999
Q ss_pred HHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 378 RGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 378 ~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
+.+.+ .+++|+|+|+|+ ..+.+++++++++. ++|.|+|.++.+++..+|++||++++||.+|+||++++|||+|
T Consensus 216 ~~l~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~ 292 (398)
T cd03796 216 PEICKKHPNVRFIIGGDGP---KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASC 292 (398)
T ss_pred HHHHhhCCCEEEEEEeCCc---hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHc
Confidence 98875 589999999775 35678888888764 7899998888888999999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH---hccCChHHHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAM---LQDFSWDADCNDIHI 531 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~---~~~fsw~~~a~~~y~ 531 (540)
|+|||+++. ||.+|++.++ . +++. +.|+++|+++|.++++++.....+.+++. +++|||+.++++ |.
T Consensus 293 G~PVI~s~~--gg~~e~i~~~-----~-~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~-~~ 362 (398)
T cd03796 293 GLLVVSTRV--GGIPEVLPPD-----M-ILLA-EPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKR-TE 362 (398)
T ss_pred CCCEEECCC--CCchhheeCC-----c-eeec-CCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHH-HH
Confidence 999999999 9999999742 1 2344 44889999999999988766655555543 389999999999 69
Q ss_pred HHHHHHh
Q 009217 532 SAYTAIK 538 (540)
Q Consensus 532 ~lY~~l~ 538 (540)
++|+++.
T Consensus 363 ~~y~~l~ 369 (398)
T cd03796 363 KVYDRIL 369 (398)
T ss_pred HHHHHHh
Confidence 9999874
No 19
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=5.6e-41 Score=345.51 Aligned_cols=366 Identities=16% Similarity=0.170 Sum_probs=262.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++++. | ..||.+.++.+|+++|+++||+|+|++...+...... .
T Consensus 1 mki~~~~~---p--~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~----------------------------~ 47 (371)
T cd04962 1 MKIGIVCY---P--TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY----------------------------S 47 (371)
T ss_pred CceeEEEE---e--CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh----------------------------c
Confidence 89999973 5 3699999999999999999999999986533111000 0
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
.++.++.++.. .+.. ...... .......+.+.+++ .+|||||+|.+.....+.++..... +..++|
T Consensus 48 ~~~~~~~~~~~----~~~~---~~~~~~---~~~~~~~l~~~i~~--~~~divh~~~~~~~~~~~~~~~~~~--~~~~~~ 113 (371)
T cd04962 48 PNIFFHEVEVP----QYPL---FQYPPY---DLALASKIAEVAKR--YKLDLLHVHYAVPHAVAAYLAREIL--GKKDLP 113 (371)
T ss_pred cCeEEEEeccc----ccch---hhcchh---HHHHHHHHHHHHhc--CCccEEeecccCCccHHHHHHHHhc--CcCCCc
Confidence 12222222100 0000 000000 01112344444443 6899999997544333333322111 113799
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
+|+|+|+....-. +... ....+.+.+++.+|.|+++|+..++.+... ++
T Consensus 114 ~i~~~h~~~~~~~---------~~~~---------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~------ 162 (371)
T cd04962 114 VVTTLHGTDITLV---------GQDP---------------SFQPATRFSIEKSDGVTAVSESLRQETYEL-FD------ 162 (371)
T ss_pred EEEEEcCCccccc---------cccc---------------cchHHHHHHHhhCCEEEEcCHHHHHHHHHh-cC------
Confidence 9999997532100 0000 112455677889999999999887765532 11
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
...++.+||||+|...|.+.. +...+++++++. +.++++++||+.+.||++.+++|
T Consensus 163 ---~~~~i~vi~n~~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~il~~g~l~~~K~~~~li~a 218 (371)
T cd04962 163 ---ITKEIEVIPNFVDEDRFRPKP-------------------DEALKRRLGAPE--GEKVLIHISNFRPVKRIDDVIRI 218 (371)
T ss_pred ---CcCCEEEecCCcCHhhcCCCc-------------------hHHHHHhcCCCC--CCeEEEEecccccccCHHHHHHH
Confidence 357899999999987765541 223456677654 35789999999999999999999
Q ss_pred HHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 377 VRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 377 ~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
+..+.+ .+++|+++|.|++ .+.+++++++++. ++|+|.|..+ ++..+|+.||++++||.+|+||++++|||+|
T Consensus 219 ~~~l~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~ 293 (371)
T cd04962 219 FAKVRKEVPARLLLVGDGPE---RSPAERLARELGLQDDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMAC 293 (371)
T ss_pred HHHHHhcCCceEEEEcCCcC---HHHHHHHHHHcCCCceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHc
Confidence 998876 4799999998753 4567777777654 6899887543 4678999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHI 531 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~ 531 (540)
|+|||+++. ||.+|++.+ |.+|+++++.|+++++++|..+++|++.+.+|++++.+ ++|||+.++++ |.
T Consensus 294 g~PvI~s~~--~~~~e~i~~-----~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~-~~ 365 (371)
T cd04962 294 GVPVVASNA--GGIPEVVKH-----GETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQ-YE 365 (371)
T ss_pred CCCEEEeCC--CCchhhhcC-----CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH-HH
Confidence 999999998 999999873 55679999999999999999999999999999988864 78999999999 59
Q ss_pred HHHHHH
Q 009217 532 SAYTAI 537 (540)
Q Consensus 532 ~lY~~l 537 (540)
++|+++
T Consensus 366 ~~y~~~ 371 (371)
T cd04962 366 ALYRRL 371 (371)
T ss_pred HHHHhC
Confidence 999864
No 20
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=7.7e-41 Score=345.03 Aligned_cols=358 Identities=15% Similarity=0.166 Sum_probs=262.8
Q ss_pred eEEEEEeccccc--cccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEE
Q 009217 58 HIIHICTEMDPL--VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGV 135 (540)
Q Consensus 58 kIl~i~~e~~P~--~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 135 (540)
||+++|++-.|. ...||+++++.++++.|. ++|++++-..+..+..+ ..
T Consensus 4 ~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~---~~~~~~~~~~~~~~~~~--------------------------~~ 54 (380)
T PRK15484 4 KIIFTVTPIFSIPPRGAAAVETWIYQVAKRTS---IPNRIACIKNPGYPEYT--------------------------KV 54 (380)
T ss_pred eEEEEeccCCCCCCccccHHHHHHHHhhhhcc---CCeeEEEecCCCCCchh--------------------------hc
Confidence 899999987754 457999999999999994 49999997766533210 01
Q ss_pred EcCeeEEEEccCC-CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHc-CCCCCEEEEcCCchhhHHHHHHHHHhhcCCC
Q 009217 136 VSGIGVTFIQPLH-YSSFFNRESVYGYSDDFERFTYFSRASLDYIVKS-RKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 136 ~~gv~v~~i~~~~-~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~-~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~ 213 (540)
.+|+.++.+.... +...|++ .+.. +...++..++..+... ..++||||+|+.. .+... ++. +..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~-~~~~~-~~~-----~~~ 120 (380)
T PRK15484 55 NDNCDIHYIGFSRIYKRLFQK--WTRL-----DPLPYSQRILNIAHKFTITKDSVIVIHNSM-KLYRQ-IRE-----RAP 120 (380)
T ss_pred cCCCceEEEEeccccchhhhh--hhcc-----CchhHHHHHHHHHHhcCCCCCcEEEEeCcH-HhHHH-HHh-----hCC
Confidence 3566666663210 0000111 0000 1122334455444442 3579999999843 22222 222 136
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCc
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 293 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl 293 (540)
++|+|+|+|+... . ..+..++.++++|+..++.+.. .+
T Consensus 121 ~~~~v~~~h~~~~-----~--------------------------------~~~~~~~~ii~~S~~~~~~~~~-~~---- 158 (380)
T PRK15484 121 QAKLVMHMHNAFE-----P--------------------------------ELLDKNAKIIVPSQFLKKFYEE-RL---- 158 (380)
T ss_pred CCCEEEEEecccC-----h--------------------------------hHhccCCEEEEcCHHHHHHHHh-hC----
Confidence 7899999996410 0 0123468899999987765543 11
Q ss_pred hHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHH
Q 009217 294 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL 373 (540)
Q Consensus 294 ~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~L 373 (540)
+..++.+||||+|.+.|.|. .+..++++++++.+ .++++|+||+.+.||++.|
T Consensus 159 ------~~~~i~vIpngvd~~~~~~~-------------------~~~~~~~~~~~~~~--~~~il~~Grl~~~Kg~~~L 211 (380)
T PRK15484 159 ------PNADISIVPNGFCLETYQSN-------------------PQPNLRQQLNISPD--ETVLLYAGRISPDKGILLL 211 (380)
T ss_pred ------CCCCEEEecCCCCHHHcCCc-------------------chHHHHHHhCCCCC--CeEEEEeccCccccCHHHH
Confidence 35689999999998877664 23345677887643 4789999999999999999
Q ss_pred HHHHHHHHh--cCcEEEEEecCCC------hhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCC-CCC
Q 009217 374 KAVVRGAKM--RGIQFVFTGTNKL------PSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFH-DPL 444 (540)
Q Consensus 374 i~A~~~l~~--~~~~lvi~G~g~~------~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~-E~f 444 (540)
++|+..+.+ ++++|+|+|+|+. ..+.+.+++++++++ .+|+|+|..+.+++..+|++||++|+||.+ |+|
T Consensus 212 i~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~-~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f 290 (380)
T PRK15484 212 MQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG-DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAF 290 (380)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC-CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccc
Confidence 999999875 4899999997642 234566777777775 789999888888889999999999999985 999
Q ss_pred chHHHHHHhcCCceEEEecCCCccccceeccCCcccccee-ecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccC
Q 009217 445 LQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRF-ISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDF 520 (540)
Q Consensus 445 glv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~-l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~f 520 (540)
|++++|||+||+|+|+++. ||++|++.+ |.+|+ ++++.|+++|+++|..+++|+++ .++++++++ ++|
T Consensus 291 ~~~~lEAma~G~PVI~s~~--gg~~Eiv~~-----~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~f 362 (380)
T PRK15484 291 CMVAVEAMAAGKPVLASTK--GGITEFVLE-----GITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKY 362 (380)
T ss_pred ccHHHHHHHcCCCEEEeCC--CCcHhhccc-----CCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhC
Confidence 9999999999999999998 999999974 55677 56889999999999999999986 678888764 899
Q ss_pred ChHHHHHHHHHHHHHHH
Q 009217 521 SWDADCNDIHISAYTAI 537 (540)
Q Consensus 521 sw~~~a~~~y~~lY~~l 537 (540)
||+.++++ |+++|+..
T Consensus 363 sw~~~a~~-~~~~l~~~ 378 (380)
T PRK15484 363 SWEGVTQR-FEEQIHNW 378 (380)
T ss_pred CHHHHHHH-HHHHHHHh
Confidence 99999999 59999864
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=4.6e-40 Score=341.47 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=220.6
Q ss_pred CCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchh
Q 009217 183 RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNI 262 (540)
Q Consensus 183 ~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 262 (540)
..+||+||+|.+.++..+..++.. +..+.|+++|+|+.+.... .. ...+ ...
T Consensus 116 ~~~~diihaH~~~~~~~~~~~~~~----~~~~~~~~~t~Hg~d~~~~---------~~----------~~~~-----~~~ 167 (406)
T PRK15427 116 PFVADVFIAHFGPAGVTAAKLREL----GVLRGKIATIFHGIDISSR---------EV----------LNHY-----TPE 167 (406)
T ss_pred cCCCCEEEEcCChHHHHHHHHHHh----CCCCCCeEEEEcccccccc---------hh----------hhhh-----hHH
Confidence 468999999987766555554331 1234577999997542100 00 0000 124
Q ss_pred hhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHH
Q 009217 263 LKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVT 342 (540)
Q Consensus 263 ~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~ 342 (540)
++..++.+|.|+++|+..++.+.. .| .+.+|+.+||||+|.+.|.+....
T Consensus 168 ~~~~~~~ad~vv~~S~~~~~~l~~--~g--------~~~~ki~vi~nGvd~~~f~~~~~~-------------------- 217 (406)
T PRK15427 168 YQQLFRRGDLMLPISDLWAGRLQK--MG--------CPPEKIAVSRMGVDMTRFSPRPVK-------------------- 217 (406)
T ss_pred HHHHHHhCCEEEECCHHHHHHHHH--cC--------CCHHHEEEcCCCCCHHHcCCCccc--------------------
Confidence 455678999999999988776643 12 146799999999999888654100
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEe
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDS 419 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~ 419 (540)
...+...++|+||+.++||++.+++|++.+.+ .+++|+|+|+|+ ..+++++++++++. ++|.|+|.
T Consensus 218 --------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~---~~~~l~~~~~~~~l~~~V~~~G~ 286 (406)
T PRK15427 218 --------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP---WERRLRTLIEQYQLEDVVEMPGF 286 (406)
T ss_pred --------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch---hHHHHHHHHHHcCCCCeEEEeCC
Confidence 01123579999999999999999999999875 479999999875 46778888888764 78999988
Q ss_pred cChHHHHHHHhcCCEEEECCCC------CCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHH
Q 009217 420 YDDALLHLIFSGSDIILCHSFH------DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNIS 493 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi~v~PS~~------E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~ 493 (540)
.+.+++..+|+.||+||+||.. |+||++++|||+||+|||+|+. ||++|+|. +|.+|+++++.|+++
T Consensus 287 ~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~--~g~~E~v~-----~~~~G~lv~~~d~~~ 359 (406)
T PRK15427 287 KPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH--SGIPELVE-----ADKSGWLVPENDAQA 359 (406)
T ss_pred CCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC--CCchhhhc-----CCCceEEeCCCCHHH
Confidence 8888889999999999999974 9999999999999999999998 99999997 456689999999999
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHHHH
Q 009217 494 LSQALEEIKN-NPLSWKRKIKDAML---QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 494 la~ai~~l~~-~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~lY~~l 537 (540)
|+++|.++++ |++.+++|+++|++ ++|+|+.+++++ .++|+++
T Consensus 360 la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l-~~~~~~~ 406 (406)
T PRK15427 360 LAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINREL-ASLLQAL 406 (406)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhC
Confidence 9999999999 99999999998875 889999999995 9999863
No 22
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=4.4e-39 Score=347.41 Aligned_cols=461 Identities=17% Similarity=0.173 Sum_probs=337.9
Q ss_pred eEEEEEeccc-----cccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCC------ccc--------c--ccC--ccee
Q 009217 58 HIIHICTEMD-----PLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACM------NLD--------G--VQG--LREI 114 (540)
Q Consensus 58 kIl~i~~e~~-----P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~------~~~--------~--~~~--l~~~ 114 (540)
-|+++|.||. |. ..||+|+......++++..|....-+.-.|... +.+ . ..+ +..+
T Consensus 87 ~~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 3449999975 54 579999999999999999999999887655431 100 0 000 0000
Q ss_pred ------eeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCC-CCCCCCCC---CCCCCCChhHH---HHHHHHHHHHHHHH
Q 009217 115 ------KAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLH-YSSFFNRE---SVYGYSDDFER---FTYFSRASLDYIVK 181 (540)
Q Consensus 115 ------~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~-~~~~~~~~---~~y~~~~~~~r---~~~~~~~~~~~~~~ 181 (540)
.....+.++|.....++|...++++++|+++... ...++.|. .+|+ .|+..| +.+|+.+.++.++.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg-~D~~~Rl~Qe~~Lg~agl~~Lr~ 244 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYG-GDQETRIQQEILLGIGGVRALRA 244 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 1144577888888899999999999999998532 11245555 4676 356778 59999999999988
Q ss_pred cCCCCCEEEEcCCchhhHHH-----HHHHH-Hhh--c-CCCCCceEEEecCCCCCC--CCChhhhh--------hcCCCc
Q 009217 182 SRKQPDVLHIHNWETAIVGP-----LFWDI-FVK--Q-GLEGTRILLSCHNLNSLC--LEHPDKLA--------LCGLDP 242 (540)
Q Consensus 182 ~~~~pDIIH~h~~~~~~~~~-----~~~~~-~~~--~-~~~~~p~V~T~H~~~~~~--~~~~~~l~--------~~g~~~ 242 (540)
++.+|||||+|+||++++++ ++... +.. + ...+..+|+|+|+..++| .++...+. .+|++.
T Consensus 245 lg~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~ 324 (778)
T cd04299 245 LGIKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSR 324 (778)
T ss_pred hCCCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCH
Confidence 88899999999999999987 44221 000 0 013578999999999999 88876663 256665
Q ss_pred cccCCCccccCCC-CCccchhhhHHHhhccceeeccccc---hhhhhhc-ccCCCchHHhhhccCceEEeccCCCCCCCC
Q 009217 243 ARLHRPDRLQDNT-KTHLVNILKGGVVYSNKVVIVSSMH---SKGRIIR-SLSHGLESTLAIHQDKLLVAPCGFDSSTWD 317 (540)
Q Consensus 243 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~ad~vi~vS~~~---~~~~~~~-~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~ 317 (540)
..+... ..+.+. .+..+|+++.+++.|+.|.+||+.+ ++++... ..++++ ...++..|.|||+...|.
T Consensus 325 ~~~~~l-g~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~------~~~~i~~ITNGVh~~~W~ 397 (778)
T cd04299 325 DRFLAL-GRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPV------EEVPIGHVTNGVHVPTWV 397 (778)
T ss_pred HHHhhh-ccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCc------ccCceeceeCCcchhhhc
Confidence 543211 122221 1246899999999999999999988 4443321 112211 256799999999999998
Q ss_pred -CCCCccccccc------------------Cccc---ccCcHHHHHHHHHHh---------------------CCCCCCC
Q 009217 318 -PSNDKFLTENY------------------CAED---MKGKTVCKVTLQQQL---------------------GLSKDAS 354 (540)
Q Consensus 318 -p~~~~~l~~~~------------------~~~~---~~~k~~~~~~lr~~~---------------------gl~~~~~ 354 (540)
|..+..+.... ..+| ++.|..+|..|.+.. +.+.+++
T Consensus 398 ~P~~~~l~~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd 477 (778)
T cd04299 398 APEMRELYDRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPN 477 (778)
T ss_pred CHHHHHHHHHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCC
Confidence 87776653221 0122 567778888775543 4445677
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHh------cCcEEEEEecCCChh------HHHHHHHHHH--HhCCCcEEEEEec
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKM------RGIQFVFTGTNKLPS------ASRALVSFQE--ELKDGIVIFVDSY 420 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~------~~~~lvi~G~g~~~~------~~~~l~~l~~--~~~~~~v~f~~~~ 420 (540)
.++++|+.|+..+||.++++..+.++.+ .++|||++|.+. |. +.+.+.++++ .++ ++|.|+..|
T Consensus 478 ~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAh-P~d~~gK~iIk~i~~~a~~p~~~-~kVvfle~Y 555 (778)
T cd04299 478 VLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAH-PADEPGKELIQEIVEFSRRPEFR-GRIVFLEDY 555 (778)
T ss_pred ccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecC-ccchHHHHHHHHHHHHHhCcCCC-CcEEEEcCC
Confidence 8899999999999999999999988854 479999999763 32 3346666776 333 799999999
Q ss_pred ChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCC----------
Q 009217 421 DDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST---------- 488 (540)
Q Consensus 421 ~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~---------- 488 (540)
+.+..+.++++||++++||+ +|+||++.|.||..|.+-+++-. |.-.|.- +|.||+.+.+
T Consensus 556 d~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlD--Gww~E~~------~g~nGwaig~~~~~~~~~~~ 627 (778)
T cd04299 556 DMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLD--GWWDEGY------DGENGWAIGDGDEYEDDEYQ 627 (778)
T ss_pred CHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeeccc--Ccccccc------CCCCceEeCCCccccChhhc
Confidence 99999999999999999999 99999999999999998888877 7777765 3567788887
Q ss_pred --CCHHHHHHHHHH-----Hhc-----CHHHHHHHHHHHHhc---cCChHHHHHHHHHHHHHHH
Q 009217 489 --FGNISLSQALEE-----IKN-----NPLSWKRKIKDAMLQ---DFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 489 --~d~~~la~ai~~-----l~~-----~~~~~~~~~~~a~~~---~fsw~~~a~~~y~~lY~~l 537 (540)
.|+++|-+.|+. +.+ .|..|.+|.++++.. +|||++|+++|+.++|.-.
T Consensus 628 d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~ 691 (778)
T cd04299 628 DAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPA 691 (778)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHH
Confidence 445566666643 324 278899999999985 9999999999888888643
No 23
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=1.9e-39 Score=334.96 Aligned_cols=360 Identities=14% Similarity=0.126 Sum_probs=252.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
-||+||...+ ..||++.++.+|++.|.++||+++|++..... ... ..+. .
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~--~~~~-----------------------~ 51 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFR--KRIQ-----------------------R 51 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhH--HHHH-----------------------h
Confidence 3899998764 46999999999999999999999999743221 100 0010 1
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
.|+.++.+... .. ..+ .+.+.+.+++++ .+|||||+|+..+. .+.++.. +.++|
T Consensus 52 ~~i~~~~~~~~------~~-------~~~----~~~~~l~~~l~~--~~~Divh~~~~~~~-~~~~~~~------~~~~~ 105 (374)
T TIGR03088 52 PDVAFYALHKQ------PG-------KDV----AVYPQLYRLLRQ--LRPDIVHTRNLAAL-EAQLPAA------LAGVP 105 (374)
T ss_pred cCceEEEeCCC------CC-------CCh----HHHHHHHHHHHH--hCCCEEEEcchhHH-HHHHHHH------hcCCC
Confidence 35666655310 00 011 112344455554 68999999975332 2222221 13455
Q ss_pred e-EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhh-hHHHhhccceeeccccchhhhhhcccCCCch
Q 009217 217 I-LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNIL-KGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 217 ~-V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
. ++|.|+....... + . .. ...++ +.....+|.++++|+..++.+... ++
T Consensus 106 ~~i~~~h~~~~~~~~--------~---~------~~-------~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~-~~---- 156 (374)
T TIGR03088 106 ARIHGEHGRDVFDLD--------G---S------NW-------KYRWLRRLYRPLIHHYVAVSRDLEDWLRGP-VK---- 156 (374)
T ss_pred eEEEeecCcccccch--------h---h------HH-------HHHHHHHHHHhcCCeEEEeCHHHHHHHHHh-cC----
Confidence 3 5555543211000 0 0 00 01122 233456899999999887765432 11
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
.+..++.+||||+|.+.|.|... .+...++....+ ++.++++++||+.++||++.|+
T Consensus 157 ----~~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~i~~vGrl~~~Kg~~~li 213 (374)
T TIGR03088 157 ----VPPAKIHQIYNGVDTERFHPSRG-----------------DRSPILPPDFFA--DESVVVGTVGRLQAVKDQPTLV 213 (374)
T ss_pred ----CChhhEEEeccCccccccCCCcc-----------------chhhhhHhhcCC--CCCeEEEEEecCCcccCHHHHH
Confidence 14678999999999988876521 111122222222 2457999999999999999999
Q ss_pred HHHHHHHhc------CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchH
Q 009217 375 AVVRGAKMR------GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQV 447 (540)
Q Consensus 375 ~A~~~l~~~------~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv 447 (540)
+|+..+.+. +++|+++|+|+ ..+.++++++.++. +++.|.|. .+++..+|++||++|+||.+|+||++
T Consensus 214 ~a~~~l~~~~~~~~~~~~l~i~G~g~---~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~ 288 (374)
T TIGR03088 214 RAFALLVRQLPEGAERLRLVIVGDGP---ARGACEQMVRAAGLAHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNT 288 (374)
T ss_pred HHHHHHHHhCcccccceEEEEecCCc---hHHHHHHHHHHcCCcceEEEcCC--cCCHHHHHHhcCEEEeccccccCchH
Confidence 999988642 68999999875 35677888887764 56777653 34467899999999999999999999
Q ss_pred HHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHH
Q 009217 448 PLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDA 524 (540)
Q Consensus 448 ~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~ 524 (540)
++|||+||+|||+++. ||.+|++.+ |.+|+++++.|+++++++|..+++|++.+.++++++++ ++|||+.
T Consensus 289 ~lEAma~G~Pvv~s~~--~g~~e~i~~-----~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~ 361 (374)
T TIGR03088 289 ILEAMASGLPVIATAV--GGNPELVQH-----GVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINA 361 (374)
T ss_pred HHHHHHcCCCEEEcCC--CCcHHHhcC-----CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999998 999999974 55679999999999999999999999999999888764 7999999
Q ss_pred HHHHHHHHHHHHH
Q 009217 525 DCNDIHISAYTAI 537 (540)
Q Consensus 525 ~a~~~y~~lY~~l 537 (540)
++++ |+++|+++
T Consensus 362 ~~~~-~~~~y~~~ 373 (374)
T TIGR03088 362 MVAA-YAGLYDQL 373 (374)
T ss_pred HHHH-HHHHHHHh
Confidence 9999 69999876
No 24
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=3.1e-39 Score=335.80 Aligned_cols=373 Identities=14% Similarity=0.121 Sum_probs=250.2
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+|...|++. ...|+++|+++||+|+|+|+....... .
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~-------------------------------~ 40 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP-------------------------------G 40 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC-------------------------------C
Confidence 689998775432 367999999999999999986542110 1
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH---HcCCCCCEEEEcC-CchhhHHHHHHHHHhhcCCC
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIV---KSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~---~~~~~pDIIH~h~-~~~~~~~~~~~~~~~~~~~~ 213 (540)
|++++.+.+...+ ....+.|...+.......+++.+.+. ..+++|||||+|. |..+ .+++.. +.
T Consensus 41 ~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~---~~l~~~-----~~ 108 (396)
T cd03818 41 GVRVVRYRPPRGP----TSGTHPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGET---LFLKDV-----WP 108 (396)
T ss_pred CeeEEEecCCCCC----CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchh---hhHHHh-----CC
Confidence 4566666432110 11234444444333322233333332 3467899999997 3322 234332 35
Q ss_pred CCceEEEecCCCC-CCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCC
Q 009217 214 GTRILLSCHNLNS-LCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 292 (540)
Q Consensus 214 ~~p~V~T~H~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~g 292 (540)
++|+|.++|-+.. .+.. .+.+.............. ....+.+..+..+|.++++|+..++.+..
T Consensus 109 ~~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ad~vi~~s~~~~~~~~~------ 173 (396)
T cd03818 109 DAPLIGYFEFYYRAEGAD-------VGFDPEFPPSLDDALRLR--NRNALILLALAQADAGVSPTRWQRSTFPA------ 173 (396)
T ss_pred CCCEEEEEeeeecCCCCC-------CCCCCCCCCchhHHHHHH--HhhhHhHHHHHhCCEEECCCHHHHhhCcH------
Confidence 7899988864211 1100 011110000000000000 00112345688999999999887765432
Q ss_pred chHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEec-ccccCCHH
Q 009217 293 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFS-DVSDVFLE 371 (540)
Q Consensus 293 l~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgr-l~~~KG~~ 371 (540)
. ...++.+||||+|.+.|.|.... ....+...++. ++.++++|+|| +.++||++
T Consensus 174 ---~---~~~ki~vI~ngvd~~~f~~~~~~-----------------~~~~~~~~~~~--~~~~~i~~vgR~l~~~Kg~~ 228 (396)
T cd03818 174 ---E---LRSRISVIHDGIDTDRLRPDPQA-----------------RLRLPNGRVLT--PGDEVITFVARNLEPYRGFH 228 (396)
T ss_pred ---h---hccceEEeCCCccccccCCCchh-----------------hhcccccccCC--CCCeEEEEECCCcccccCHH
Confidence 1 14789999999999988875210 11111112222 24578999998 99999999
Q ss_pred HHHHHHHHHHh--cCcEEEEEecCCC---------hhHH-HHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECC
Q 009217 372 NLKAVVRGAKM--RGIQFVFTGTNKL---------PSAS-RALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHS 439 (540)
Q Consensus 372 ~Li~A~~~l~~--~~~~lvi~G~g~~---------~~~~-~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS 439 (540)
.|++|++.+.+ ++++|+|+|+++. +.+. ..++++..++..++|+|+|..+.+++..+|+.||++++||
T Consensus 229 ~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s 308 (396)
T cd03818 229 VFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLT 308 (396)
T ss_pred HHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcC
Confidence 99999998875 5899999996321 1122 2233333322237899999999888899999999999999
Q ss_pred CCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Q 009217 440 FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML-- 517 (540)
Q Consensus 440 ~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~-- 517 (540)
..|++|++++||||||+|||+++. ||++|++. +|.+|+++++.|+++|+++|.++++|++.+.+|+++|++
T Consensus 309 ~~e~~~~~llEAmA~G~PVIas~~--~g~~e~i~-----~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 309 YPFVLSWSLLEAMACGCLVVGSDT--APVREVIT-----DGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred cccccchHHHHHHHCCCCEEEcCC--CCchhhcc-----cCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 99999997 356689999999999999999999999999999998876
Q ss_pred -ccCChHHHHHHH
Q 009217 518 -QDFSWDADCNDI 529 (540)
Q Consensus 518 -~~fsw~~~a~~~ 529 (540)
++|||+.++.++
T Consensus 382 ~~~fs~~~~~~~~ 394 (396)
T cd03818 382 LRYDLLSVCLPRQ 394 (396)
T ss_pred HHhccHHHHHHHH
Confidence 679999999983
No 25
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.2e-39 Score=337.28 Aligned_cols=372 Identities=13% Similarity=0.049 Sum_probs=232.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
||||+|...+ ..||+|..+.+|++.|.++||+|.++.-.......+. . .
T Consensus 1 mkil~i~~~l----~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~---~------------------------~ 49 (405)
T PRK10125 1 MNILQFNVRL----AEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESV---S------------------------H 49 (405)
T ss_pred CeEEEEEeee----cCCchhHHHHHHHHHHHhcCCeEEEEEecCCCccccc---c------------------------c
Confidence 8999998743 6799999999999999999999999987644322110 0 0
Q ss_pred cCe-eEEEEccCC-------CCCCCCCCCCCCCCChhHHHHHHH-HHHHHHHHHcCCCCCEEEEcCCchhhHHH--HHHH
Q 009217 137 SGI-GVTFIQPLH-------YSSFFNRESVYGYSDDFERFTYFS-RASLDYIVKSRKQPDVLHIHNWETAIVGP--LFWD 205 (540)
Q Consensus 137 ~gv-~v~~i~~~~-------~~~~~~~~~~y~~~~~~~r~~~~~-~~~~~~~~~~~~~pDIIH~h~~~~~~~~~--~~~~ 205 (540)
+++ .++++.+.. ....+++.. +++ .+..+++.+ ..+|||||+|..++.++.. ++..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~~-~~~pDviHlH~~~~~~~~~~~l~~~ 116 (405)
T PRK10125 50 QNYPQVIKHTPRMTAMANIALFRLFNRDL------------FGNFNELYRTITR-TPGPVVLHFHVLHSYWLNLKSVVRF 116 (405)
T ss_pred CCcceEEEecccHHHHHHHHHHHhcchhh------------cchHHHHHHHHhh-ccCCCEEEEecccCceecHHHHHHH
Confidence 111 111221100 000111111 111 233344433 5799999999877653322 1110
Q ss_pred -HHhhcCCCCCceEEEecCCC-CCCCCChhhhhhcC-CCccccCCCccccC----CCCC-c----cchhhhHHHhhccce
Q 009217 206 -IFVKQGLEGTRILLSCHNLN-SLCLEHPDKLALCG-LDPARLHRPDRLQD----NTKT-H----LVNILKGGVVYSNKV 273 (540)
Q Consensus 206 -~~~~~~~~~~p~V~T~H~~~-~~~~~~~~~l~~~g-~~~~~~~~~~~~~~----~~~~-~----~~~~~~~~~~~ad~v 273 (540)
........++|+|+|+||.. +.|.|.... .|. ....+..||....+ +... . .....+...+.++.+
T Consensus 117 ~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~--~C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~i 194 (405)
T PRK10125 117 CEKVKNHKPDVTLVWTLHDHWSVTGRCAFTD--GCEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQF 194 (405)
T ss_pred HhhhhcccCCCCEEEecccccccCCCcCCCc--ccccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEE
Confidence 00001125789999999954 445443311 111 11111111111000 0000 0 011122223346789
Q ss_pred eeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCC
Q 009217 274 VIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDA 353 (540)
Q Consensus 274 i~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~ 353 (540)
+++|+..++.+.. .+ ...++.+||||||++.+.+..+. ...+ .+ +
T Consensus 195 V~~S~~l~~~~~~-~~----------~~~~i~vI~NGid~~~~~~~~~~------------------~~~~----~~--~ 239 (405)
T PRK10125 195 ISPSQHVADAFNS-LY----------GPGRCRIINNGIDMATEAILAEL------------------PPVR----ET--Q 239 (405)
T ss_pred EEcCHHHHHHHHH-Hc----------CCCCEEEeCCCcCcccccccccc------------------cccc----cC--C
Confidence 9999998886542 22 24789999999997543322100 0000 01 2
Q ss_pred CceEEEEEecc--cccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHh
Q 009217 354 STIVVGCIFSD--VSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALLHLIFS 430 (540)
Q Consensus 354 ~~~lv~~vgrl--~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~~~~~~~~ 430 (540)
+.++++++|+. .++||++.|++|+..+. .+++|+++|.|+. .. .++|.+++.. +..++..+|+
T Consensus 240 ~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~-~~------------~~~v~~~g~~~~~~~l~~~y~ 305 (405)
T PRK10125 240 GKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSP-FT------------AGNVVNHGFETDKRKLMSALN 305 (405)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCc-cc------------ccceEEecCcCCHHHHHHHHH
Confidence 34678999993 47899999999999874 5799999997642 10 1467777654 5567789999
Q ss_pred cCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHH
Q 009217 431 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKR 510 (540)
Q Consensus 431 ~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~ 510 (540)
+||+||+||.+|+||++++||||||+|||+|++ ||++|++++ + +|+++++.|+++|++++ +++..++
T Consensus 306 ~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~--gG~~Eiv~~-----~-~G~lv~~~d~~~La~~~-----~~~~~~~ 372 (405)
T PRK10125 306 QMDALVFSSRVDNYPLILCEALSIGVPVIATHS--DAAREVLQK-----S-GGKTVSEEEVLQLAQLS-----KPEIAQA 372 (405)
T ss_pred hCCEEEECCccccCcCHHHHHHHcCCCEEEeCC--CChHHhEeC-----C-cEEEECCCCHHHHHhcc-----CHHHHHH
Confidence 999999999999999999999999999999999 999999973 2 57999999999999864 3333322
Q ss_pred -H---HHHH---HhccCChHHHHHHHHHHHHHHH
Q 009217 511 -K---IKDA---MLQDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 511 -~---~~~a---~~~~fsw~~~a~~~y~~lY~~l 537 (540)
+ ..++ ..+.|||+.++++ |+++|+++
T Consensus 373 ~~~~~~~~~r~~~~~~fs~~~~~~~-y~~lY~~l 405 (405)
T PRK10125 373 VFGTTLAEFSQRSRAAYSGQQMLEE-YVNFYQNL 405 (405)
T ss_pred hhhhHHHHHHHHHHHhCCHHHHHHH-HHHHHHhC
Confidence 1 1122 2378999999999 69999874
No 26
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=5.6e-39 Score=331.12 Aligned_cols=359 Identities=14% Similarity=0.082 Sum_probs=245.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||+|+++.+ ..||++.++.++++.|.+.||+|+++++............+.. ...
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~---------------------~~~ 55 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHN---------------------ALQ 55 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhH---------------------hhc
Confidence 699998753 3599999999999999999999999998543210000000000 000
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH--HcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCC
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIV--KSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGT 215 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~--~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (540)
|.++ . .+.. .+..+ .......+. ....+|||||+|++....+ ..++. ..++
T Consensus 56 g~~~-~-----------------~~~~-~~~~~-~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~-~~~~~------~~~~ 108 (372)
T cd03792 56 GADI-E-----------------LSEE-EKEIY-LEWNEENAERPLLDLDADVVVIHDPQPLAL-PLFKK------KRGR 108 (372)
T ss_pred CCCC-C-----------------CCHH-HHHHH-HHHHHHHhccccccCCCCEEEECCCCchhH-HHhhh------cCCC
Confidence 1111 0 0000 11111 111111111 1135899999998764332 22211 2478
Q ss_pred ceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchH
Q 009217 216 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 295 (540)
Q Consensus 216 p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~ 295 (540)
|+|+++|+..... . . ....+++..+..+|.+++.|+.+... ++
T Consensus 109 ~~i~~~H~~~~~~---~----------~--------------~~~~~~~~~~~~~d~~i~~~~~~~~~--------~~-- 151 (372)
T cd03792 109 PWIWRCHIDLSSP---N----------R--------------RVWDFLQPYIEDYDAAVFHLPEYVPP--------QV-- 151 (372)
T ss_pred eEEEEeeeecCCC---c----------H--------------HHHHHHHHHHHhCCEEeecHHHhcCC--------CC--
Confidence 9999999632100 0 0 01234455677889888877433221 11
Q ss_pred HhhhccCceEEeccCCCCCC-CCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 296 TLAIHQDKLLVAPCGFDSST-WDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 296 ~l~~~~~ki~vI~nGvd~~~-~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
...++ +||||+|... +... ++ ...+..+++++|++.+ .++++++||+.++||++.|+
T Consensus 152 ----~~~~~-vipngvd~~~~~~~~--------~~-------~~~~~~~~~~~~~~~~--~~~i~~vgrl~~~Kg~~~ll 209 (372)
T cd03792 152 ----PPRKV-IIPPSIDPLSGKNRE--------LS-------PADIEYILEKYGIDPE--RPYITQVSRFDPWKDPFGVI 209 (372)
T ss_pred ----CCceE-EeCCCCCCCccccCC--------CC-------HHHHHHHHHHhCCCCC--CcEEEEEeccccccCcHHHH
Confidence 23455 9999999653 1111 11 1234567788888643 58899999999999999999
Q ss_pred HHHHHHHh--cCcEEEEEecCCC--hhHHHHHHHHHHHhCC-CcEEEEEec--ChHHHHHHHhcCCEEEECCCCCCCchH
Q 009217 375 AVVRGAKM--RGIQFVFTGTNKL--PSASRALVSFQEELKD-GIVIFVDSY--DDALLHLIFSGSDIILCHSFHDPLLQV 447 (540)
Q Consensus 375 ~A~~~l~~--~~~~lvi~G~g~~--~~~~~~l~~l~~~~~~-~~v~f~~~~--~~~~~~~~~~~aDi~v~PS~~E~fglv 447 (540)
+|++.+.+ .+++|+++|+|+. +...+.++++.+..+. ++|.|++.. +.+++..+|++||+|++||.+|+||++
T Consensus 210 ~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~ 289 (372)
T cd03792 210 DAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLT 289 (372)
T ss_pred HHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHH
Confidence 99998875 4799999998753 2233445555544433 689988776 778888999999999999999999999
Q ss_pred HHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHH
Q 009217 448 PLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDA 524 (540)
Q Consensus 448 ~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~ 524 (540)
++|||+||+|+|+++. ||++|++. +|.+|+++++ +++++++|..+++|++.+++|++++.+ ++|||+.
T Consensus 290 ~lEA~a~G~Pvv~s~~--~~~~~~i~-----~~~~g~~~~~--~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~ 360 (372)
T cd03792 290 VTEALWKGKPVIAGPV--GGIPLQIE-----DGETGFLVDT--VEEAAVRILYLLRDPELRRKMGANAREHVRENFLITR 360 (372)
T ss_pred HHHHHHcCCCEEEcCC--CCchhhcc-----cCCceEEeCC--cHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHH
Confidence 9999999999999998 99999986 3566788874 457888999999999999999988865 7899999
Q ss_pred HHHHHHHHHHHHH
Q 009217 525 DCNDIHISAYTAI 537 (540)
Q Consensus 525 ~a~~~y~~lY~~l 537 (540)
++++ |.++|+++
T Consensus 361 ~~~~-~~~~~~~~ 372 (372)
T cd03792 361 HLKD-YLYLISKL 372 (372)
T ss_pred HHHH-HHHHHHhC
Confidence 9999 59999864
No 27
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=1.4e-38 Score=330.52 Aligned_cols=382 Identities=16% Similarity=0.226 Sum_probs=267.7
Q ss_pred eEEEEEeccccc-----cccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEE
Q 009217 58 HIIHICTEMDPL-----VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIW 132 (540)
Q Consensus 58 kIl~i~~e~~P~-----~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 132 (540)
||+++....+|. ...||++.++.+|+++|+++||+|+|+++.........
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~------------------------- 55 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI------------------------- 55 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCc-------------------------
Confidence 455555543332 13689999999999999999999999997543211100
Q ss_pred EEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCC
Q 009217 133 IGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGL 212 (540)
Q Consensus 133 ~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~ 212 (540)
....+|+.++.+.... ..+....... .....|...+...+++...+|||||+|.+.++.++..+.. .
T Consensus 56 ~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~------~ 122 (398)
T cd03800 56 VELAPGVRVVRVPAGP-AEYLPKEELW------PYLDEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLAR------R 122 (398)
T ss_pred cccccceEEEeccccc-ccCCChhhcc------hhHHHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHh------h
Confidence 0013466666654210 0011110011 1112234555555555334899999999877766555433 3
Q ss_pred CCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCC
Q 009217 213 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 292 (540)
Q Consensus 213 ~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~g 292 (540)
.++|+|+|.|+......... ..... +. . .......+..++.+|.++++|+...+.+.... +
T Consensus 123 ~~~~~i~~~h~~~~~~~~~~------~~~~~-~~----~-----~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~-~-- 183 (398)
T cd03800 123 LGIPLVHTFHSLGAVKRRHL------GAADT-YE----P-----ARRIEAEERLLRAADRVIASTPQEAEELYSLY-G-- 183 (398)
T ss_pred cCCceEEEeecccccCCccc------ccccc-cc----h-----hhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHc-c--
Confidence 68999999997643111000 00000 00 0 01123456678899999999998776654321 1
Q ss_pred chHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHH
Q 009217 293 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 372 (540)
Q Consensus 293 l~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~ 372 (540)
.+..++.+||||+|.+.|.+..+. ...++.++.+. +.++++++||+.+.||++.
T Consensus 184 ------~~~~~~~vi~ng~~~~~~~~~~~~------------------~~~~~~~~~~~--~~~~i~~~gr~~~~k~~~~ 237 (398)
T cd03800 184 ------AYPRRIRVVPPGVDLERFTPYGRA------------------EARRARLLRDP--DKPRILAVGRLDPRKGIDT 237 (398)
T ss_pred ------ccccccEEECCCCCccceecccch------------------hhHHHhhccCC--CCcEEEEEcccccccCHHH
Confidence 135579999999999888665210 11133444433 3578999999999999999
Q ss_pred HHHHHHHHHh--cCcEEEEEecCCCh---hHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCch
Q 009217 373 LKAVVRGAKM--RGIQFVFTGTNKLP---SASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQ 446 (540)
Q Consensus 373 Li~A~~~l~~--~~~~lvi~G~g~~~---~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fgl 446 (540)
+++|+..+.+ .+++|+++|.+... .....++.+++.++. ++|.|+|..+.+++..+|+.||++++||.+|+||+
T Consensus 238 ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~ 317 (398)
T cd03800 238 LIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGL 317 (398)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCc
Confidence 9999999875 47999999976532 123446677777654 78999999998889999999999999999999999
Q ss_pred HHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChH
Q 009217 447 VPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 523 (540)
Q Consensus 447 v~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~ 523 (540)
+++|||+||+|+|+++. ||..|++.+ +.+|+++++.|+++++++|..+++|++.++++++++++ ++|||+
T Consensus 318 ~l~Ea~a~G~Pvi~s~~--~~~~e~i~~-----~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~ 390 (398)
T cd03800 318 TALEAMACGLPVVATAV--GGPRDIVVD-----GVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWE 390 (398)
T ss_pred HHHHHHhcCCCEEECCC--CCHHHHccC-----CCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999998 999999974 34579999999999999999999999999999988876 899999
Q ss_pred HHHHHH
Q 009217 524 ADCNDI 529 (540)
Q Consensus 524 ~~a~~~ 529 (540)
.+++++
T Consensus 391 ~~~~~~ 396 (398)
T cd03800 391 RVAARL 396 (398)
T ss_pred HHHHHH
Confidence 999983
No 28
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=1.6e-38 Score=322.27 Aligned_cols=330 Identities=13% Similarity=0.064 Sum_probs=232.3
Q ss_pred ceEEEEEecccc--ccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 57 FHIIHICTEMDP--LVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 57 mkIl~i~~e~~P--~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
|||++|++.+.| ....||+++++.+|+++|.++||+|+++++........ ..
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~----~~---------------------- 54 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP----LV---------------------- 54 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc----ee----------------------
Confidence 899999998754 34579999999999999999999999999865432110 00
Q ss_pred EEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCC
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 214 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~ 214 (540)
...+ ..+. ..................+.++ ..+|||||+|.+..... +. . ..+
T Consensus 55 --------~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~Divh~~~~~~~~~--~~-~------~~~ 107 (335)
T cd03802 55 --------PVVP---EPLR-----LDAPGRDRAEAEALALAERALA--AGDFDIVHNHSLHLPLP--FA-R------PLP 107 (335)
T ss_pred --------eccC---CCcc-----cccchhhHhhHHHHHHHHHHHh--cCCCCEEEecCcccchh--hh-c------ccC
Confidence 0000 0000 0000000011111222333333 36899999998765544 11 1 368
Q ss_pred CceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCch
Q 009217 215 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 215 ~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
+|+|+|+|+...... ..........+.++++|+..++....
T Consensus 108 ~~~v~~~h~~~~~~~-------------------------------~~~~~~~~~~~~~~~~s~~~~~~~~~-------- 148 (335)
T cd03802 108 VPVVTTLHGPPDPEL-------------------------------LKLYYAARPDVPFVSISDAQRRPWPP-------- 148 (335)
T ss_pred CCEEEEecCCCCccc-------------------------------chHHHhhCcCCeEEEecHHHHhhccc--------
Confidence 899999997542110 00122345567889999877654321
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
..++.+||||+|.+.|.+.. .+...++|+||+.+.||++.++
T Consensus 149 ------~~~~~vi~ngvd~~~~~~~~--------------------------------~~~~~i~~~Gr~~~~Kg~~~li 190 (335)
T cd03802 149 ------LPWVATVHNGIDLDDYPFRG--------------------------------PKGDYLLFLGRISPEKGPHLAI 190 (335)
T ss_pred ------ccccEEecCCcChhhCCCCC--------------------------------CCCCEEEEEEeeccccCHHHHH
Confidence 26899999999998876531 1235789999999999999999
Q ss_pred HHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhC--CCcEEEEEecChHHHHHHHhcCCEEEECCC-CCCCchHHHHH
Q 009217 375 AVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELK--DGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPLKA 451 (540)
Q Consensus 375 ~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~--~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fglv~lEA 451 (540)
+++.+ .+++|+++|.|+.. ..+........ .++|+|+|..+.+++..+|+.+|++++||. .|+||++++||
T Consensus 191 ~~~~~---~~~~l~i~G~~~~~---~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEA 264 (335)
T cd03802 191 RAARR---AGIPLKLAGPVSDP---DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEA 264 (335)
T ss_pred HHHHh---cCCeEEEEeCCCCH---HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHH
Confidence 98765 47999999987542 23333333332 379999999988888899999999999998 59999999999
Q ss_pred HhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHHHHHH
Q 009217 452 LKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDIHI 531 (540)
Q Consensus 452 ma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~y~ 531 (540)
|+||+|||+++. ||.+|++.+ |.+|+++++ +++++++|..+.+.+. +.+++...++|||+.++++ |+
T Consensus 265 ma~G~PvI~~~~--~~~~e~i~~-----~~~g~l~~~--~~~l~~~l~~l~~~~~---~~~~~~~~~~~s~~~~~~~-~~ 331 (335)
T cd03802 265 MACGTPVIAFRR--GAVPEVVED-----GVTGFLVDS--VEELAAAVARADRLDR---AACRRRAERRFSAARMVDD-YL 331 (335)
T ss_pred HhcCCCEEEeCC--CCchhheeC-----CCcEEEeCC--HHHHHHHHHHHhccHH---HHHHHHHHHhCCHHHHHHH-HH
Confidence 999999999999 999999984 556799876 8899999999866442 1222233489999999999 69
Q ss_pred HHHH
Q 009217 532 SAYT 535 (540)
Q Consensus 532 ~lY~ 535 (540)
++|+
T Consensus 332 ~~y~ 335 (335)
T cd03802 332 ALYR 335 (335)
T ss_pred HHhC
Confidence 9995
No 29
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=5.6e-39 Score=333.39 Aligned_cols=372 Identities=18% Similarity=0.161 Sum_probs=250.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
||||++++.+ ..||+++++.+|+++|+++||+|+|+|+..+.... ..+ ..
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-----~~~---------------------~~ 50 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC-----FEE---------------------TK 50 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc-----chh---------------------cc
Confidence 8999997654 46999999999999999999999999975432110 000 01
Q ss_pred c-CeeEEEEccCCCCCCCCCCCCCCCCChhHHH-HHHHHHHHHHH--HHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCC
Q 009217 137 S-GIGVTFIQPLHYSSFFNRESVYGYSDDFERF-TYFSRASLDYI--VKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGL 212 (540)
Q Consensus 137 ~-gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~-~~~~~~~~~~~--~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~ 212 (540)
+ ++.+..+.......++.+ ...+ .++........ .....++||||+|++..+.. +++. .
T Consensus 51 ~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~--~~~~------~ 113 (392)
T cd03805 51 DGTLPVRVRGDWLPRSIFGR---------FHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSACVP--LLKL------F 113 (392)
T ss_pred CCeeEEEEEeEEEcchhhHh---------HHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcchHHH--HHHH------h
Confidence 1 133333221000011110 0001 11111111111 11246899999997654322 2222 1
Q ss_pred CCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCC
Q 009217 213 EGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 292 (540)
Q Consensus 213 ~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~g 292 (540)
.+.|+|+++|....... . ..... ..+ +. .....+.+..++.+|.|+++|+..++.+... ++.
T Consensus 114 ~~~~~i~~~h~~~~~~~-------~---~~~~~---~~~--~~-~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~-~~~- 175 (392)
T cd03805 114 SPSKILFYCHFPDQLLA-------Q---RGSLL---KRL--YR-KPFDWLEEFTTGMADKIVVNSNFTASVFKKT-FPS- 175 (392)
T ss_pred cCCcEEEEEecChHHhc-------C---CCcHH---HHH--HH-HHHHHHHHHHhhCceEEEEcChhHHHHHHHH-hcc-
Confidence 34899999994221000 0 00000 000 00 0011244556788999999999887765432 110
Q ss_pred chHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHH
Q 009217 293 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 372 (540)
Q Consensus 293 l~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~ 372 (540)
....++.+|+||+|.+.|.|..... .++..... ++.++++++||+.+.||++.
T Consensus 176 ------~~~~~~~vi~n~vd~~~~~~~~~~~-------------------~~~~~~~~--~~~~~i~~~grl~~~Kg~~~ 228 (392)
T cd03805 176 ------LAKNPREVVYPCVDTDSFESTSEDP-------------------DPGLLIPK--SGKKTFLSINRFERKKNIAL 228 (392)
T ss_pred ------cccCCcceeCCCcCHHHcCcccccc-------------------cccccccC--CCceEEEEEeeecccCChHH
Confidence 1223446999999998886642110 11112222 24588999999999999999
Q ss_pred HHHHHHHHHh-----cCcEEEEEecCCCh-----hHHHHHHHHHHH-hCC-CcEEEEEecChHHHHHHHhcCCEEEECCC
Q 009217 373 LKAVVRGAKM-----RGIQFVFTGTNKLP-----SASRALVSFQEE-LKD-GIVIFVDSYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 373 Li~A~~~l~~-----~~~~lvi~G~g~~~-----~~~~~l~~l~~~-~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
+++|++++.+ .+++|+++|+|+.. .+.+++++++++ ++. ++|.|+|..+.+++..+|+.||++++||.
T Consensus 229 ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~ 308 (392)
T cd03805 229 AIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPS 308 (392)
T ss_pred HHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCC
Confidence 9999999875 37999999976421 245678888887 554 79999999999888999999999999999
Q ss_pred CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---
Q 009217 441 HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--- 517 (540)
Q Consensus 441 ~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--- 517 (540)
.|+||++++|||+||+|||+++. ||..|++.+ |.+|+++++ |+++++++|..++++++.+++++++|++
T Consensus 309 ~E~~g~~~lEAma~G~PvI~s~~--~~~~e~i~~-----~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~ 380 (392)
T cd03805 309 NEHFGIVPLEAMYAGKPVIACNS--GGPLETVVD-----GETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAAGRKRVK 380 (392)
T ss_pred cCCCCchHHHHHHcCCCEEEECC--CCcHHHhcc-----CCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 999999873 455788876 8999999999999999999999998865
Q ss_pred ccCChHHHHHH
Q 009217 518 QDFSWDADCND 528 (540)
Q Consensus 518 ~~fsw~~~a~~ 528 (540)
++|||+.++++
T Consensus 381 ~~~s~~~~~~~ 391 (392)
T cd03805 381 EKFSTEAFAER 391 (392)
T ss_pred HhcCHHHHhhh
Confidence 78999999876
No 30
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=8.6e-38 Score=337.15 Aligned_cols=383 Identities=14% Similarity=0.110 Sum_probs=245.4
Q ss_pred CCCCCc-eEEEEEeccccccccccHHHHHhHHHHHHHHcCC------------eEEEEeecC--CCCccccccCcceeee
Q 009217 52 SKKNGF-HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH------------LVEVILPKY--ACMNLDGVQGLREIKA 116 (540)
Q Consensus 52 ~~~~~m-kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh------------~V~vi~p~~--~~~~~~~~~~l~~~~~ 116 (540)
.+.++. ||+|+.... ..||++.++.+|+.+|.+.+. ++.|++..- ...+......+.
T Consensus 276 ~~~~~~~rIl~vi~sl----~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~---- 347 (694)
T PRK15179 276 GPESFVGPVLMINGSL----GAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLA---- 347 (694)
T ss_pred CCCCCcceEEEEeCCC----CCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHH----
Confidence 456677 999998764 469999999999999999854 345554311 000000000111
Q ss_pred eeeeecCCeeeeeEEEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHH--------HHHHHHHHHHHHHHcCCCCCE
Q 009217 117 ECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFER--------FTYFSRASLDYIVKSRKQPDV 188 (540)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r--------~~~~~~~~~~~~~~~~~~pDI 188 (540)
-.|++|..+.... ...... ..+....+.+ .....+.+.+++++ .+|||
T Consensus 348 -------------------~~Gv~v~~l~~~~--~~~~~~-~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~--~kpDI 403 (694)
T PRK15179 348 -------------------DAGIPVSVYSDMQ--AWGGCE-FSSLLAPYREYLRFLPKQIIEGTTKLTDVMRS--SVPSV 403 (694)
T ss_pred -------------------hCCCeEEEeccCC--ccCccc-ccccchhhHHHhhhcchhHHHHHHHHHHHHHH--cCCcE
Confidence 1467777664211 000000 0000001111 11223445555654 58999
Q ss_pred EEEcCCchhhHHHHHHHHHhhcCCCCCceEE-EecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHH
Q 009217 189 LHIHNWETAIVGPLFWDIFVKQGLEGTRILL-SCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGV 267 (540)
Q Consensus 189 IH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~-T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (540)
||+|...+.+++.++.. +.++|+|+ |.|++... .. .. +.. .....+...+
T Consensus 404 VH~h~~~a~~lg~lAa~------~~gvPvIv~t~h~~~~~-~~-~~----------------~~~-----~~~~~l~~~l 454 (694)
T PRK15179 404 VHIWQDGSIFACALAAL------LAGVPRIVLSVRTMPPV-DR-PD----------------RYR-----VEYDIIYSEL 454 (694)
T ss_pred EEEeCCcHHHHHHHHHH------HcCCCEEEEEeCCCccc-cc-hh----------------HHH-----HHHHHHHHHH
Confidence 99998777666555543 26788876 56754210 00 00 000 0001111223
Q ss_pred hhccceeeccc--cchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHH
Q 009217 268 VYSNKVVIVSS--MHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ 345 (540)
Q Consensus 268 ~~ad~vi~vS~--~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~ 345 (540)
..++.++++|. ..++.+.. .++ .+.+++.|||||||.+.|.|... .+. .+.
T Consensus 455 ~~~~~~i~Vs~S~~~~~~l~~-~~g--------~~~~kI~VI~NGVd~~~f~~~~~-----------------~~~-~~~ 507 (694)
T PRK15179 455 LKMRGVALSSNSQFAAHRYAD-WLG--------VDERRIPVVYNGLAPLKSVQDDA-----------------CTA-MMA 507 (694)
T ss_pred HhcCCeEEEeCcHHHHHHHHH-HcC--------CChhHEEEECCCcCHHhcCCCch-----------------hhH-HHH
Confidence 34555554544 33343332 112 25689999999999887765310 111 111
Q ss_pred HhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecCh
Q 009217 346 QLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDD 422 (540)
Q Consensus 346 ~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~ 422 (540)
.+......+.++|+++||+.++||++.|++|+..+.+ .+++|+|+|+|+ ..+.+++++++++. ++|+|+|..+
T Consensus 508 ~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~---~~~~L~~l~~~lgL~~~V~flG~~~- 583 (694)
T PRK15179 508 QFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP---LLESVREFAQRLGMGERILFTGLSR- 583 (694)
T ss_pred hhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc---chHHHHHHHHHcCCCCcEEEcCCcc-
Confidence 1211111235789999999999999999999998875 479999999875 46778888888875 7899886543
Q ss_pred HHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCH--HHHHHHHHH
Q 009217 423 ALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGN--ISLSQALEE 500 (540)
Q Consensus 423 ~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~--~~la~ai~~ 500 (540)
.+..+|+.||+||+||.+|+||++++|||+||+|||+|+. ||++|+|. +|.+|+++++.|+ ++++++|..
T Consensus 584 -dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~--gG~~EiV~-----dg~~GlLv~~~d~~~~~La~aL~~ 655 (694)
T PRK15179 584 -RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLA--GGAGEAVQ-----EGVTGLTLPADTVTAPDVAEALAR 655 (694)
T ss_pred -hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECC--CChHHHcc-----CCCCEEEeCCCCCChHHHHHHHHH
Confidence 3668999999999999999999999999999999999998 99999998 4667899997764 578888877
Q ss_pred HhcCHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHH
Q 009217 501 IKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYT 535 (540)
Q Consensus 501 l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~lY~ 535 (540)
++++......+++++++ ++|||+.++++ |+++|+
T Consensus 656 ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~-~~~lY~ 692 (694)
T PRK15179 656 IHDMCAADPGIARKAADWASARFSLNQMIAS-TVRCYQ 692 (694)
T ss_pred HHhChhccHHHHHHHHHHHHHhCCHHHHHHH-HHHHhC
Confidence 76654444455555543 79999999999 599996
No 31
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=7.4e-38 Score=322.20 Aligned_cols=379 Identities=15% Similarity=0.100 Sum_probs=234.4
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcC-CeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIW 132 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G-h~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 132 (540)
.++|||+++|..|.|+ ++|+.+.+..++..|+++| |+|+||.|.++..+.....+- ...|.... .+...++-|
T Consensus 2 ~~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~---~~~f~~~~-~~e~~~~~~ 75 (462)
T PLN02846 2 QKKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPN---KITFSSPS-EQEAYVRQW 75 (462)
T ss_pred CCCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccc---cccccCch-hhhhhhhhh
Confidence 3469999999999996 6899999999999999999 899999998763211000000 00000000 000011111
Q ss_pred EEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcC-CchhhH--HHHHHHHHhh
Q 009217 133 IGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHN-WETAIV--GPLFWDIFVK 209 (540)
Q Consensus 133 ~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~-~~~~~~--~~~~~~~~~~ 209 (540)
.+-+++++.....+ +.+. .|+.. .++......+.+.+.+ .+|||||+|+ ++.++. +... .
T Consensus 76 ----~~~~v~r~~s~~~p--~yp~-r~~~~---~r~~~~~~~i~~~l~~--~~pDVIHv~tP~~LG~~~~g~~~-~---- 138 (462)
T PLN02846 76 ----LEERISFLPKFSIK--FYPG-KFSTD---KRSILPVGDISETIPD--EEADIAVLEEPEHLTWYHHGKRW-K---- 138 (462)
T ss_pred ----ccCeEEEecccccc--cCcc-ccccc---ccccCChHHHHHHHHh--cCCCEEEEcCchhhhhHHHHHHH-H----
Confidence 12233343321111 0010 01000 1111222444555543 7899999998 333332 1111 1
Q ss_pred cCCCCCceEEEecCCCCCCCCChhhhhhcC--CCccccCCCccccCCCCCccchhhhHHH--hhccceeeccccchhhhh
Q 009217 210 QGLEGTRILLSCHNLNSLCLEHPDKLALCG--LDPARLHRPDRLQDNTKTHLVNILKGGV--VYSNKVVIVSSMHSKGRI 285 (540)
Q Consensus 210 ~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ad~vi~vS~~~~~~~~ 285 (540)
++ .+ ++|.|+|.- +.. .+...+ ..... ...++...+ .++|.|+++|....+ +.
T Consensus 139 ~k-~~-~vV~tyHT~-y~~-----Y~~~~~~g~~~~~--------------l~~~~~~~~~r~~~d~vi~pS~~~~~-l~ 195 (462)
T PLN02846 139 TK-FR-LVIGIVHTN-YLE-----YVKREKNGRVKAF--------------LLKYINSWVVDIYCHKVIRLSAATQD-YP 195 (462)
T ss_pred hc-CC-cEEEEECCC-hHH-----HHHHhccchHHHH--------------HHHHHHHHHHHHhcCEEEccCHHHHH-Hh
Confidence 11 34 488899972 110 000000 00000 011111112 248999999974432 22
Q ss_pred hcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc
Q 009217 286 IRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV 365 (540)
Q Consensus 286 ~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~ 365 (540)
......+||||.+.|+|.. +. .++..+ +.+...+.++|+||+.
T Consensus 196 ----------------~~~i~~v~GVd~~~f~~~~-------------------~~-~~~~~~-~~~~~~~~~l~vGRL~ 238 (462)
T PLN02846 196 ----------------RSIICNVHGVNPKFLEIGK-------------------LK-LEQQKN-GEQAFTKGAYYIGKMV 238 (462)
T ss_pred ----------------hCEEecCceechhhcCCCc-------------------cc-HhhhcC-CCCCcceEEEEEecCc
Confidence 1244456999999888762 11 222222 2222246789999999
Q ss_pred ccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCC
Q 009217 366 SDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDP 443 (540)
Q Consensus 366 ~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~ 443 (540)
++||++.|++|++.+.+ .+++|+|+|+|++ .+++++++++++.+ ++++.++.... .+|+.+|+||+||.+|+
T Consensus 239 ~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~---~~~L~~~a~~l~l~-~~vf~G~~~~~--~~~~~~DvFv~pS~~Et 312 (462)
T PLN02846 239 WSKGYKELLKLLHKHQKELSGLEVDLYGSGED---SDEVKAAAEKLELD-VRVYPGRDHAD--PLFHDYKVFLNPSTTDV 312 (462)
T ss_pred ccCCHHHHHHHHHHHHhhCCCeEEEEECCCcc---HHHHHHHHHhcCCc-EEEECCCCCHH--HHHHhCCEEEECCCccc
Confidence 99999999999998875 4799999999974 66788888887643 33444554333 68999999999999999
Q ss_pred CchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChH
Q 009217 444 LLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWD 523 (540)
Q Consensus 444 fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~ 523 (540)
||+|++||||||+|||+++. ++ .|++.+ |.+|+++ .|.+++++++..+++++. .++..+++ +.|||+
T Consensus 313 ~g~v~lEAmA~G~PVVa~~~--~~-~~~v~~-----~~ng~~~--~~~~~~a~ai~~~l~~~~--~~~~~~a~-~~~SWe 379 (462)
T PLN02846 313 VCTTTAEALAMGKIVVCANH--PS-NEFFKQ-----FPNCRTY--DDGKGFVRATLKALAEEP--APLTDAQR-HELSWE 379 (462)
T ss_pred chHHHHHHHHcCCcEEEecC--CC-cceeec-----CCceEec--CCHHHHHHHHHHHHccCc--hhHHHHHH-HhCCHH
Confidence 99999999999999999998 66 588873 5566777 477899999999987542 33333333 699999
Q ss_pred HHHHHHHHHHHH
Q 009217 524 ADCNDIHISAYT 535 (540)
Q Consensus 524 ~~a~~~y~~lY~ 535 (540)
.++++ ++++|+
T Consensus 380 ~~~~~-l~~~~~ 390 (462)
T PLN02846 380 AATER-FLRVAD 390 (462)
T ss_pred HHHHH-HHHHhc
Confidence 99999 599986
No 32
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-38 Score=302.25 Aligned_cols=359 Identities=18% Similarity=0.264 Sum_probs=250.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
++|++|+..|+| ..||++.+++.|++.|.+.||.|.+++-.|++.. +++. .-
T Consensus 1 ~~i~mVsdff~P--~~ggveshiy~lSq~li~lghkVvvithayg~r~-----giry---------------------lt 52 (426)
T KOG1111|consen 1 SRILMVSDFFYP--STGGVESHIYALSQCLIRLGHKVVVITHAYGNRV-----GIRY---------------------LT 52 (426)
T ss_pred CcceeeCccccc--CCCChhhhHHHhhcchhhcCCeEEEEeccccCcc-----ceee---------------------ec
Confidence 579999999999 4799999999999999999999999998887542 1211 23
Q ss_pred cCeeEEEEccC--CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCC
Q 009217 137 SGIGVTFIQPL--HYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 214 (540)
Q Consensus 137 ~gv~v~~i~~~--~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~ 214 (540)
+|++||.++-. .+..-|. ..|+ + +..+.. . + ++++..|||.|...+.+.--.+ .+.+..+
T Consensus 53 ~glkVyylp~~v~~n~tT~p--tv~~--~----~Pllr~-i--~---lrE~I~ivhghs~fS~lahe~l----~hartMG 114 (426)
T KOG1111|consen 53 NGLKVYYLPAVVGYNQTTFP--TVFS--D----FPLLRP-I--L---LRERIEIVHGHSPFSYLAHEAL----MHARTMG 114 (426)
T ss_pred CCceEEEEeeeeeecccchh--hhhc--c----Ccccch-h--h---hhhceEEEecCChHHHHHHHHH----HHHHhcC
Confidence 57888887621 1111110 1111 1 111111 1 1 1368899999986554442111 1233468
Q ss_pred CceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCch
Q 009217 215 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 215 ~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
.++|+|-|.+. |..+.... + .-+.+...+...|++|+||.+-+....-. ..|
T Consensus 115 lktVfTdHSlf--Gfad~~si---------~-------------~n~ll~~sL~~id~~IcVshtskentvlr---~~L- 166 (426)
T KOG1111|consen 115 LKTVFTDHSLF--GFADIGSI---------L-------------TNKLLPLSLANIDRIICVSHTSKENTVLR---GAL- 166 (426)
T ss_pred ceEEEeccccc--cccchhhh---------h-------------hcceeeeeecCCCcEEEEeecCCCceEEE---ecc-
Confidence 99999999742 11110000 0 00223334667899999998765543221 112
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
.++|+.+|||.++++.|.|.... .+. .+...++.++||..+||+|+|+
T Consensus 167 -----~p~kvsvIPnAv~~~~f~P~~~~--------------------------~~S-~~i~~ivv~sRLvyrKGiDll~ 214 (426)
T KOG1111|consen 167 -----APAKVSVIPNAVVTHTFTPDAAD--------------------------KPS-ADIITIVVASRLVYRKGIDLLL 214 (426)
T ss_pred -----CHhHeeeccceeeccccccCccc--------------------------cCC-CCeeEEEEEeeeeeccchHHHH
Confidence 47899999999999999995210 011 2346788999999999999999
Q ss_pred HHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHH
Q 009217 375 AVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKA 451 (540)
Q Consensus 375 ~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEA 451 (540)
++++++.+ ++++|+|+|+||. ...+++..+++.. ++|.++|.++.+++.++|...|+|+.||..|+||++++||
T Consensus 215 ~iIp~vc~~~p~vrfii~GDGPk---~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEA 291 (426)
T KOG1111|consen 215 EIIPSVCDKHPEVRFIIIGDGPK---RIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEA 291 (426)
T ss_pred HHHHHHHhcCCCeeEEEecCCcc---cchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHH
Confidence 99999986 5899999999984 3345555566554 8999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecCCCccccceeccCCccccceeecCCCCH----HHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHH
Q 009217 452 LKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGN----ISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCN 527 (540)
Q Consensus 452 ma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~----~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~ 527 (540)
|+||.+||++++ ||++|++..+- ......++ +++.++|.++.+.|+...+. .++-|+|..+|+
T Consensus 292 aScGL~VVsTrV--GGIpeVLP~d~-------i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~----v~~~y~w~dVa~ 358 (426)
T KOG1111|consen 292 ASCGLPVVSTRV--GGIPEVLPEDM-------ITLGEPGPDDLVGAVEKAITKLRTLPLEFHDR----VKKMYSWKDVAE 358 (426)
T ss_pred HhCCCEEEEeec--CCccccCCccc-------eeccCCChHHHHHHHHHHHHHhccCchhHHHH----HHHhccHHHHHH
Confidence 999999999999 99999987431 22233334 44555555555554433332 236699999999
Q ss_pred HHHHHHHHHHh
Q 009217 528 DIHISAYTAIK 538 (540)
Q Consensus 528 ~~y~~lY~~l~ 538 (540)
++ +++|+++.
T Consensus 359 rT-ekvy~r~~ 368 (426)
T KOG1111|consen 359 RT-EKVYDRAA 368 (426)
T ss_pred HH-HHHHHHHh
Confidence 97 99999875
No 33
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.5e-37 Score=315.11 Aligned_cols=355 Identities=18% Similarity=0.178 Sum_probs=243.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++|..+++|. ..||++.++.+|+++|+++||+|+|+++........ ...+
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~---------------------------~~~~ 52 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQKE---------------------------TEYN 52 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcc---------------------------cccC
Confidence 699998876664 479999999999999999999999999754322100 0135
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcC--CchhhHHHHHHHHHhhcCCCCC
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHN--WETAIVGPLFWDIFVKQGLEGT 215 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~--~~~~~~~~~~~~~~~~~~~~~~ 215 (540)
|++++.++.. +.... .++.+........+. .++|++|+|. ........+++ ..+.
T Consensus 53 ~i~~~~~~~~-------~~~~~------~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~-------~~~~ 109 (363)
T cd04955 53 GVRLIHIPAP-------EIGGL------GTIIYDILAILHALF---VKRDIDHVHALGPAIAPFLPLLR-------LKGK 109 (363)
T ss_pred CceEEEcCCC-------Cccch------hhhHHHHHHHHHHHh---ccCCeEEEEecCccHHHHHHHHH-------hcCC
Confidence 7777766421 00000 011111111222221 2445555554 32222212221 2578
Q ss_pred ceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchH
Q 009217 216 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 295 (540)
Q Consensus 216 p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~ 295 (540)
|+|+++|+..+..... +.. ...+ .....+.+++.+|.|+++|+..++.+.. .++
T Consensus 110 ~~v~~~h~~~~~~~~~-------~~~---------~~~~----~~~~~~~~~~~ad~ii~~s~~~~~~~~~-~~~----- 163 (363)
T cd04955 110 KVVVNMDGLEWKRAKW-------GRP---------AKRY----LKFGEKLAVKFADRLIADSPGIKEYLKE-KYG----- 163 (363)
T ss_pred CEEEEccCcceeeccc-------ccc---------hhHH----HHHHHHHHHhhccEEEeCCHHHHHHHHH-hcC-----
Confidence 9999999864321100 000 0000 0123345678899999999988877643 222
Q ss_pred HhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHH
Q 009217 296 TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKA 375 (540)
Q Consensus 296 ~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~ 375 (540)
... .+||||+|...+.+. ...++.++++. .+.++++||+.+.||++.|++
T Consensus 164 -----~~~-~~i~ngv~~~~~~~~---------------------~~~~~~~~~~~---~~~i~~~G~~~~~Kg~~~li~ 213 (363)
T cd04955 164 -----RDS-TYIPYGADHVVSSEE---------------------DEILKKYGLEP---GRYYLLVGRIVPENNIDDLIE 213 (363)
T ss_pred -----CCC-eeeCCCcChhhcchh---------------------hhhHHhcCCCC---CcEEEEEecccccCCHHHHHH
Confidence 122 899999998755431 12334455432 245789999999999999999
Q ss_pred HHHHHHhcCcEEEEEecCCC-hhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCC-CCCchHHHHHH
Q 009217 376 VVRGAKMRGIQFVFTGTNKL-PSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFH-DPLLQVPLKAL 452 (540)
Q Consensus 376 A~~~l~~~~~~lvi~G~g~~-~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~-E~fglv~lEAm 452 (540)
|+..+.. +++|+++|+|+. ..+.+.+++ .++. ++|+|+|..+.++...+|+.||++++||.. |+||++++|||
T Consensus 214 a~~~l~~-~~~l~ivG~~~~~~~~~~~~~~---~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAm 289 (363)
T cd04955 214 AFSKSNS-GKKLVIVGNADHNTPYGKLLKE---KAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAM 289 (363)
T ss_pred HHHhhcc-CceEEEEcCCCCcchHHHHHHH---HhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHH
Confidence 9998764 899999998743 222233322 3332 799999998888888999999999999998 99999999999
Q ss_pred hcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHH
Q 009217 453 KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 529 (540)
Q Consensus 453 a~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 529 (540)
+||+|||+++. |+..|++.+ +|+++++.++ ++++|..+++|++.+.++++++.+ ++|||+.++++
T Consensus 290 a~G~PvI~s~~--~~~~e~~~~-------~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~- 357 (363)
T cd04955 290 AYGCPVLASDN--PFNREVLGD-------KAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQ- 357 (363)
T ss_pred HcCCCEEEecC--CccceeecC-------CeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH-
Confidence 99999999998 899999863 3578877765 999999999999999999988865 67999999999
Q ss_pred HHHHHH
Q 009217 530 HISAYT 535 (540)
Q Consensus 530 y~~lY~ 535 (540)
|+++|+
T Consensus 358 ~~~~y~ 363 (363)
T cd04955 358 YEELYK 363 (363)
T ss_pred HHHHhC
Confidence 599984
No 34
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=7.7e-37 Score=312.53 Aligned_cols=340 Identities=17% Similarity=0.131 Sum_probs=245.3
Q ss_pred cccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCCC
Q 009217 70 VSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY 149 (540)
Q Consensus 70 ~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~ 149 (540)
...||++.++.+|+++|+++||+|.|+++...... . +. ..|++++.+..
T Consensus 7 ~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~----~~-----------------------~~~~~~~~~~~--- 55 (355)
T cd03819 7 LESGGVERGTLELARALVERGHRSLVASAGGRLVA-E----LE-----------------------AEGSRHIKLPF--- 55 (355)
T ss_pred hccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHH-H----HH-----------------------hcCCeEEEccc---
Confidence 35699999999999999999999999987432111 0 10 12444444321
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCC
Q 009217 150 SSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCL 229 (540)
Q Consensus 150 ~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~ 229 (540)
... ..+ ....+.......+++ .+||+||+|+....+.+.++.. ..++|+|+++|+.....
T Consensus 56 ---~~~-~~~-------~~~~~~~~l~~~~~~--~~~dii~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~- 115 (355)
T cd03819 56 ---ISK-NPL-------RILLNVARLRRLIRE--EKVDIVHARSRAPAWSAYLAAR------RTRPPFVTTVHGFYSVN- 115 (355)
T ss_pred ---ccc-chh-------hhHHHHHHHHHHHHH--cCCCEEEECCCchhHHHHHHHH------hcCCCEEEEeCCchhhH-
Confidence 000 011 111122334444443 6899999998665555444332 26899999999753110
Q ss_pred CChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEecc
Q 009217 230 EHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPC 309 (540)
Q Consensus 230 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~n 309 (540)
.+.+..+..+|.++++|+..++.+.. .++ .+..++.+|||
T Consensus 116 -------------------------------~~~~~~~~~~~~vi~~s~~~~~~~~~-~~~--------~~~~k~~~i~n 155 (355)
T cd03819 116 -------------------------------FRYNAIMARGDRVIAVSNFIADHIRE-NYG--------VDPDRIRVIPR 155 (355)
T ss_pred -------------------------------HHHHHHHHhcCEEEEeCHHHHHHHHH-hcC--------CChhhEEEecC
Confidence 02234466799999999988876652 222 24679999999
Q ss_pred CCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEE
Q 009217 310 GFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQF 387 (540)
Q Consensus 310 Gvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~l 387 (540)
|+|.+.|.+.... ......++++++++. +.++++++||+.++||++.+++|+..+.+ .+++|
T Consensus 156 gi~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l 219 (355)
T cd03819 156 GVDLDRFDPGAVP--------------PERILALAREWPLPK--GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHL 219 (355)
T ss_pred CccccccCccccc--------------hHHHHHHHHHcCCCC--CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEE
Confidence 9999887654210 112223567777654 35789999999999999999999999986 58999
Q ss_pred EEEecCCC-hhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECC-CCCCCchHHHHHHhcCCceEEEecC
Q 009217 388 VFTGTNKL-PSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHS-FHDPLLQVPLKALKYGAAPIAVTSS 464 (540)
Q Consensus 388 vi~G~g~~-~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS-~~E~fglv~lEAma~G~pvI~~~~~ 464 (540)
+++|.++. ..+.+.+++.+++++. ++|.|+|. .+++..+|++||++++|| .+|+||++++|||+||+|||+++.
T Consensus 220 ~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~- 296 (355)
T cd03819 220 LIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH- 296 (355)
T ss_pred EEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC-
Confidence 99997753 2344556666666654 68998877 345678999999999999 799999999999999999999998
Q ss_pred CCccccceeccCCccccceeecCCCCHHHHHHHHHHH-hcCHHHHHHHHHHHHh---ccCChHHH
Q 009217 465 DIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI-KNNPLSWKRKIKDAML---QDFSWDAD 525 (540)
Q Consensus 465 ~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l-~~~~~~~~~~~~~a~~---~~fsw~~~ 525 (540)
||..|++.+ +.+|+++++.|+++++++|..+ ..+++.+.+++++|++ ++|||+.|
T Consensus 297 -~~~~e~i~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~~ 355 (355)
T cd03819 297 -GGARETVRP-----GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDRM 355 (355)
T ss_pred -CCcHHHHhC-----CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhccC
Confidence 999999974 4467999999999999999644 4589999999988875 89999875
No 35
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2.8e-36 Score=308.72 Aligned_cols=353 Identities=16% Similarity=0.154 Sum_probs=250.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||++++.+ ..||.+.++.+|+++|.++||+|+|++......... .. .
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~----~~------------------------~ 48 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKP----PI------------------------D 48 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccc----hh------------------------h
Confidence 589888764 569999999999999999999999998653321110 00 0
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
+..+..+. +.+. . ..+........+++++ .+|||||+|.+++.+++.+++.. ..+.|+
T Consensus 49 ~~~~~~~~-------~~~~-~-------~~~~~~~~~~~~~~~~--~~pdiv~~~~~~~~~~~~l~~~~-----~~~~~~ 106 (360)
T cd04951 49 ATIILNLN-------MSKN-P-------LSFLLALWKLRKILRQ--FKPDVVHAHMFHANIFARLLRLF-----LPSPPL 106 (360)
T ss_pred ccceEEec-------cccc-c-------hhhHHHHHHHHHHHHh--cCCCEEEEcccchHHHHHHHHhh-----CCCCcE
Confidence 00011111 0000 0 0011111223344443 68999999987776665555432 257899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
++|.|+....+.. .....+.....++.++++|+...+.+.... .
T Consensus 107 v~~~h~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-~------- 150 (360)
T cd04951 107 ICTAHSKNEGGRL----------------------------RMLAYRLTDFLSDLTTNVSKEALDYFIASK-A------- 150 (360)
T ss_pred EEEeeccCchhHH----------------------------HHHHHHHHhhccCceEEEcHHHHHHHHhcc-C-------
Confidence 9999975421100 001112233456778888887776655421 1
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
.+..++.+||||+|...|.+.. ..+..+++.++++. +.++++++||+.+.||++.+++|+
T Consensus 151 -~~~~~~~~i~ng~~~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~~~l~~g~~~~~kg~~~li~a~ 210 (360)
T cd04951 151 -FNANKSFVVYNGIDTDRFRKDP-----------------ARRLKIRNALGVKN--DTFVILAVGRLVEAKDYPNLLKAF 210 (360)
T ss_pred -CCcccEEEEccccchhhcCcch-----------------HHHHHHHHHcCcCC--CCEEEEEEeeCchhcCcHHHHHHH
Confidence 1457999999999988776541 13445677788754 358899999999999999999999
Q ss_pred HHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 378 RGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 378 ~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
..+.+ ++++|+|+|+|+. .+++++.++.++. ++|.|+|..+ ++..+|+.||++++||.+|+||++++|||++
T Consensus 211 ~~l~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~~v~~~g~~~--~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~ 285 (360)
T cd04951 211 AKLLSDYLDIKLLIAGDGPL---RATLERLIKALGLSNRVKLLGLRD--DIAAYYNAADLFVLSSAWEGFGLVVAEAMAC 285 (360)
T ss_pred HHHHhhCCCeEEEEEcCCCc---HHHHHHHHHhcCCCCcEEEecccc--cHHHHHHhhceEEecccccCCChHHHHHHHc
Confidence 98876 3799999998753 4567777776653 6899987543 4568999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh-cCHHHHHHHHHH--HHhccCChHHHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK-NNPLSWKRKIKD--AMLQDFSWDADCNDIHI 531 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~-~~~~~~~~~~~~--a~~~~fsw~~~a~~~y~ 531 (540)
|+|||+++. |++.|++.+ +|+++++.|+++++++|.+++ .+++.++.++.+ ...++|||+.++++ |.
T Consensus 286 G~PvI~~~~--~~~~e~i~~-------~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~ 355 (360)
T cd04951 286 ELPVVATDA--GGVREVVGD-------SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQ-WL 355 (360)
T ss_pred CCCEEEecC--CChhhEecC-------CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence 999999998 999999873 357888999999999999998 466666666554 23389999999999 69
Q ss_pred HHHH
Q 009217 532 SAYT 535 (540)
Q Consensus 532 ~lY~ 535 (540)
++|+
T Consensus 356 ~~y~ 359 (360)
T cd04951 356 TLYT 359 (360)
T ss_pred HHhh
Confidence 9996
No 36
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=6.2e-37 Score=314.21 Aligned_cols=349 Identities=10% Similarity=0.060 Sum_probs=239.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc--CCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK--GHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~--Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
|||++++. +.| ..||+++++.+++++|.++ ||+|.++++...... .....+... .
T Consensus 1 mkI~~~~~-~~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~~~~~~~~-----~-------------- 57 (359)
T PRK09922 1 MKIAFIGE-AVS--GFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AWLKEIKYA-----Q-------------- 57 (359)
T ss_pred CeeEEecc-ccc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HHHHhcchh-----c--------------
Confidence 89999976 344 3599999999999999999 899999998654211 100000000 0
Q ss_pred EEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCC
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 214 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~ 214 (540)
....+++. + +..... ...+.+.+++ .+|||||+|+..+.+.+.+++... + ..
T Consensus 58 ~~~~~~~~---------~------~~~~~~-------~~~l~~~l~~--~~~Dii~~~~~~~~~~~~~~~~~~---~-~~ 109 (359)
T PRK09922 58 SFSNIKLS---------F------LRRAKH-------VYNFSKWLKE--TQPDIVICIDVISCLYANKARKKS---G-KQ 109 (359)
T ss_pred ccccchhh---------h------hcccHH-------HHHHHHHHHh--cCCCEEEEcCHHHHHHHHHHHHHh---C-CC
Confidence 00000000 0 000000 1223344443 689999999854444444443321 1 23
Q ss_pred CceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCch
Q 009217 215 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 215 ~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
.+++.+.|.... .... ..+ ..+..+|.++++|+..++.+... + +
T Consensus 110 ~~~~~~~h~~~~---------------~~~~--------------~~~--~~~~~~d~~i~~S~~~~~~~~~~--~--~- 153 (359)
T PRK09922 110 FKIFSWPHFSLD---------------HKKH--------------AEC--KKITCADYHLAISSGIKEQMMAR--G--I- 153 (359)
T ss_pred CeEEEEecCccc---------------ccch--------------hhh--hhhhcCCEEEEcCHHHHHHHHHc--C--C-
Confidence 566777774210 0000 000 11367899999999988876531 2 2
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc--ccCCHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV--SDVFLEN 372 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~--~~KG~~~ 372 (540)
+..++.+||||+|.+.+.... +...+.+.++++||+. ++||++.
T Consensus 154 -----~~~ki~vi~N~id~~~~~~~~-----------------------------~~~~~~~~i~~~Grl~~~~~k~~~~ 199 (359)
T PRK09922 154 -----SAQRISVIYNPVEIKTIIIPP-----------------------------PERDKPAVFLYVGRLKFEGQKNVKE 199 (359)
T ss_pred -----CHHHEEEEcCCCCHHHccCCC-----------------------------cccCCCcEEEEEEEEecccCcCHHH
Confidence 356899999999965442110 0011246799999986 5699999
Q ss_pred HHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecCh--HHHHHHHhcCCEEEECCCCCCCchHHH
Q 009217 373 LKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDD--ALLHLIFSGSDIILCHSFHDPLLQVPL 449 (540)
Q Consensus 373 Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~--~~~~~~~~~aDi~v~PS~~E~fglv~l 449 (540)
+++|+..+. .+++|+|+|+|++ .+.+++++++++. ++|+|+|..+. +.+..+|+.||++|+||.+|+||++++
T Consensus 200 l~~a~~~~~-~~~~l~ivG~g~~---~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~l 275 (359)
T PRK09922 200 LFDGLSQTT-GEWQLHIIGDGSD---FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLL 275 (359)
T ss_pred HHHHHHhhC-CCeEEEEEeCCcc---HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHH
Confidence 999998775 3799999998863 5678888887764 79999986643 677889999999999999999999999
Q ss_pred HHHhcCCceEEEe-cCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHHH
Q 009217 450 KALKYGAAPIAVT-SSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCND 528 (540)
Q Consensus 450 EAma~G~pvI~~~-~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~ 528 (540)
||||||+|||+++ . ||..|+|. +|.+|+++++.|+++++++|.++++|++.+..........+|+-+...++
T Consensus 276 EAma~G~Pvv~s~~~--~g~~eiv~-----~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (359)
T PRK09922 276 EAMSYGIPCISSDCM--SGPRDIIK-----PGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVLYFKN 348 (359)
T ss_pred HHHHcCCCEEEeCCC--CChHHHcc-----CCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999 7 89999997 35678999999999999999999999985422222212268999999999
Q ss_pred HHHHHHHHHh
Q 009217 529 IHISAYTAIK 538 (540)
Q Consensus 529 ~y~~lY~~l~ 538 (540)
+ .++|+.+.
T Consensus 349 ~-~~~~~~~~ 357 (359)
T PRK09922 349 L-NNALFSKL 357 (359)
T ss_pred H-HHHHHHHh
Confidence 5 99998764
No 37
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=1.8e-36 Score=310.79 Aligned_cols=345 Identities=16% Similarity=0.203 Sum_probs=244.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
||||+++.. + ..||.+.++..++++|.++||+|+|++......
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~--------------------------------- 43 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKKAL--------------------------------- 43 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecchh---------------------------------
Confidence 899999863 3 459999999999999999999999998642200
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
.+.++ ..+|||||+|.+..+.+.......+ ..++|
T Consensus 44 ---------------------------------------~~~~~--~~~~diih~~~~~~~~~~~~~~~~~----~~~~~ 78 (365)
T cd03825 44 ---------------------------------------ISKIE--IINADIVHLHWIHGGFLSIEDLSKL----LDRKP 78 (365)
T ss_pred ---------------------------------------hhChh--cccCCEEEEEccccCccCHHHHHHH----HcCCC
Confidence 00011 2589999999866555433333321 14889
Q ss_pred eEEEecCCCCCC---CCChhhh---hhcCCCccccCCCccccCCCC----CccchhhhHHH-hhccceeeccccchhhhh
Q 009217 217 ILLSCHNLNSLC---LEHPDKL---ALCGLDPARLHRPDRLQDNTK----THLVNILKGGV-VYSNKVVIVSSMHSKGRI 285 (540)
Q Consensus 217 ~V~T~H~~~~~~---~~~~~~l---~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~ad~vi~vS~~~~~~~~ 285 (540)
+|+|+|+..... ..+.... ..++.. +. ...+.. .......+..+ ..++.++++|+..++.+.
T Consensus 79 ~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~ 151 (365)
T cd03825 79 VVWTLHDMWPFTGGCHYPGGCDRYKTECGNC------PQ-LGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRWLADCAR 151 (365)
T ss_pred EEEEcccCcccccccCCccccccccccCCCC------CC-CCCCCcccHHHHHHHHHHHHhccCCcEEEehhHHHHHHHH
Confidence 999999864321 0110000 000000 00 000000 00011111112 346678888887766544
Q ss_pred hcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc
Q 009217 286 IRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV 365 (540)
Q Consensus 286 ~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~ 365 (540)
.. + ..+..++.+||||+|.+.|.|. .+...++.++++.+ ..++++.|+..
T Consensus 152 ~~-~--------~~~~~~~~vi~ngi~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~i~~~~~~~ 201 (365)
T cd03825 152 SS-S--------LFKGIPIEVIPNGIDTTIFRPR-------------------DKREARKRLGLPAD--KKIILFGAVGG 201 (365)
T ss_pred hc-c--------ccCCCceEEeCCCCcccccCCC-------------------cHHHHHHHhCCCCC--CeEEEEEecCC
Confidence 31 1 1145799999999999888665 34456677777654 34555666654
Q ss_pred --ccCCHHHHHHHHHHHHh---cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHhcCCEEEECC
Q 009217 366 --SDVFLENLKAVVRGAKM---RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD-DALLHLIFSGSDIILCHS 439 (540)
Q Consensus 366 --~~KG~~~Li~A~~~l~~---~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~-~~~~~~~~~~aDi~v~PS 439 (540)
+.||++.+++|+..+.+ .+++++++|.++. . .. ... .++|.|++.++ ++++..+|+.||++++||
T Consensus 202 ~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~-~--~~-----~~~-~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps 272 (365)
T cd03825 202 TDPRKGFDELIEALKRLAERWKDDIELVVFGASDP-E--IP-----PDL-PFPVHYLGSLNDDESLALIYSAADVFVVPS 272 (365)
T ss_pred CccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch-h--hh-----ccC-CCceEecCCcCCHHHHHHHHHhCCEEEecc
Confidence 48999999999998876 5799999997642 1 11 122 26899998888 778889999999999999
Q ss_pred CCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Q 009217 440 FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML-- 517 (540)
Q Consensus 440 ~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~-- 517 (540)
.+|+||++++|||+||+|||+++. ||+.|++.+ +.+|+++++.|+++++++|.++++|++.+.++++++.+
T Consensus 273 ~~e~~g~~~~Eam~~g~PvI~~~~--~~~~e~~~~-----~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 273 LQENFPNTAIEALACGTPVVAFDV--GGIPDIVDH-----GVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred ccccccHHHHHHHhcCCCEEEecC--CCChhheeC-----CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999874 34579999999999999999999999999999988765
Q ss_pred -ccCChHHHHHHHHHHHHHHH
Q 009217 518 -QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 518 -~~fsw~~~a~~~y~~lY~~l 537 (540)
++|||+.++++ |.++|+++
T Consensus 346 ~~~~s~~~~~~~-~~~~y~~~ 365 (365)
T cd03825 346 ENEFDSRVQAKR-YLSLYEEL 365 (365)
T ss_pred HHhcCHHHHHHH-HHHHHhhC
Confidence 78999999999 69999874
No 38
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=7.3e-36 Score=305.26 Aligned_cols=351 Identities=16% Similarity=0.157 Sum_probs=250.0
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+|+..|+|. .||.+.++.+|+++|.++||+|+|+++......... ...
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---------------------------~~~ 51 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE---------------------------ERN 51 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh---------------------------hcc
Confidence 799999988885 699999999999999999999999987543221110 012
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
+++++.+.. +... ..... . ......++....+|||||+|...........+. ..++|+
T Consensus 52 ~~~~~~~~~-----~~~~-~~~~~--~--------~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~------~~~~~~ 109 (357)
T cd03795 52 GHRVIRAPS-----LLNV-ASTPF--S--------PSFFKQLKKLAKKADVIHLHFPNPLADLALLLL------PRKKPV 109 (357)
T ss_pred CceEEEeec-----cccc-ccccc--c--------HHHHHHHHhcCCCCCEEEEecCcchHHHHHHHh------ccCceE
Confidence 333333321 1000 00000 0 011111112247899999997332222111111 157899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
++++|+...... . . ... ...+.+..++.+|.|+++|+.+.+.+.... .
T Consensus 110 i~~~h~~~~~~~----------~----~-----~~~-----~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~-~------- 157 (357)
T cd03795 110 VVHWHSDIVKQK----------L----L-----LKL-----YRPLQRRFLRRADAIVATSPNYAETSPVLR-R------- 157 (357)
T ss_pred EEEEcChhhccc----------h----h-----hhh-----hhHHHHHHHHhcCEEEeCcHHHHHHHHHhc-C-------
Confidence 999996322110 0 0 000 123556678899999999998877554311 1
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
...++.+||||+|.+.|.+... .+. .....+ .+.+.++|+||+.+.||++.+++|+
T Consensus 158 --~~~~~~~i~~gi~~~~~~~~~~-----------------~~~---~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~ 213 (357)
T cd03795 158 --FRDKVRVIPLGLDPARYPRPDA-----------------LEE---AIWRRA--AGRPFFLFVGRLVYYKGLDVLLEAA 213 (357)
T ss_pred --CccceEEecCCCChhhcCCcch-----------------hhh---HhhcCC--CCCcEEEEecccccccCHHHHHHHH
Confidence 2478999999999987765421 110 112222 2357899999999999999999999
Q ss_pred HHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhc
Q 009217 378 RGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKY 454 (540)
Q Consensus 378 ~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~ 454 (540)
.++. +++|+|+|+|+ ....+++++++.+. ++|.|+|.++.+++..+|+.||++++||. .|+||++++|||+|
T Consensus 214 ~~l~--~~~l~i~G~g~---~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~ 288 (357)
T cd03795 214 AALP--DAPLVIVGEGP---LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAF 288 (357)
T ss_pred Hhcc--CcEEEEEeCCh---hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHc
Confidence 9886 89999999774 35567777766553 79999999998888999999999999996 59999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADC 526 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a 526 (540)
|+|||+++. |+..|.+.+ .|.+|+++++.|+++++++|..+++|++.+++|++++.+ ++|||+.++
T Consensus 289 g~Pvi~~~~--~~~~~~i~~----~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 289 GKPVISTEI--GTGGSYVNL----HGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred CCCEEecCC--CCchhHHhh----CCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 999999998 898988763 255679999999999999999999999999999998876 889999874
No 39
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=2.9e-36 Score=309.91 Aligned_cols=274 Identities=16% Similarity=0.118 Sum_probs=212.5
Q ss_pred CCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhh
Q 009217 184 KQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNIL 263 (540)
Q Consensus 184 ~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 263 (540)
.+|||||+|....+..+..+.. ..++|+|+|+|+.+....... ..+. ... ......
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~------~~~~p~i~~~h~~~~~~~~~~---~~~~----------~~~-----~~~~~~ 136 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLAR------RLGVPLVVTFHGFDATTSLAL---LLRS----------RWA-----LYARRR 136 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHH------HcCCCEEEEEeCccccccchh---hccc----------chh-----HHHHHH
Confidence 6899999997554444333322 268999999997543111000 0000 000 012344
Q ss_pred hHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHH
Q 009217 264 KGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTL 343 (540)
Q Consensus 264 ~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~l 343 (540)
+..++.+|.|+++|+..++.+... + + +..++.+++||+|.+.|.|..
T Consensus 137 ~~~~~~~d~ii~~s~~~~~~~~~~--~--~------~~~~i~vi~~g~d~~~~~~~~----------------------- 183 (367)
T cd05844 137 RRLARRAALFIAVSQFIRDRLLAL--G--F------PPEKVHVHPIGVDTAKFTPAT----------------------- 183 (367)
T ss_pred HHHHHhcCEEEECCHHHHHHHHHc--C--C------CHHHeEEecCCCCHHhcCCCC-----------------------
Confidence 556788999999999888766542 1 1 457899999999988776531
Q ss_pred HHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEec
Q 009217 344 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSY 420 (540)
Q Consensus 344 r~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~ 420 (540)
...+.+.++|+|++.+.||++.+++|+..+.+ .+++|+++|+|+ ..+++++++++++. ++|+|+|..
T Consensus 184 -------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~---~~~~~~~~~~~~~~~~~v~~~g~~ 253 (367)
T cd05844 184 -------PARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGP---LLAALEALARALGLGGRVTFLGAQ 253 (367)
T ss_pred -------CCCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCch---HHHHHHHHHHHcCCCCeEEECCCC
Confidence 01124679999999999999999999999875 489999999764 45678888887653 789999999
Q ss_pred ChHHHHHHHhcCCEEEECCC------CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHH
Q 009217 421 DDALLHLIFSGSDIILCHSF------HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISL 494 (540)
Q Consensus 421 ~~~~~~~~~~~aDi~v~PS~------~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~l 494 (540)
+.+++..+|+.||++++||. .|+||++++|||+||+|||+++. ||..|++.+ +.+|+++++.|++++
T Consensus 254 ~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~--~~~~e~i~~-----~~~g~~~~~~d~~~l 326 (367)
T cd05844 254 PHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRH--GGIPEAVED-----GETGLLVPEGDVAAL 326 (367)
T ss_pred CHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCC--CCchhheec-----CCeeEEECCCCHHHH
Confidence 98889999999999999997 59999999999999999999998 999999873 456799999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHHH
Q 009217 495 SQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHIS 532 (540)
Q Consensus 495 a~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~ 532 (540)
+++|.++++|++.+++++.++.+ ++|||+.+++++ .+
T Consensus 327 ~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l-~~ 366 (367)
T cd05844 327 AAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKL-EA 366 (367)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHH-hc
Confidence 99999999999999999988764 789999999984 54
No 40
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=6.7e-36 Score=308.19 Aligned_cols=291 Identities=14% Similarity=0.088 Sum_probs=204.7
Q ss_pred HHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEE-EecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 173 RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILL-SCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~-T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
.+...++++ .+|||||+|+..+.+.+.++.. +.++|+++ +.|.. +... ....+ . .
T Consensus 270 ~~l~~~ir~--~rpDIVHt~~~~a~l~g~laA~------lagvpviv~~~h~~-~~~~-~~r~~----------~----~ 325 (578)
T PRK15490 270 KHLVPHLCE--RKLDYLSVWQDGACLMIALAAL------IAGVPRIQLGLRGL-PPVV-RKRLF----------K----P 325 (578)
T ss_pred HHHHHHHHH--cCCCEEEEcCcccHHHHHHHHH------hcCCCEEEEeeccc-CCcc-hhhHH----------H----H
Confidence 344455554 7999999998665555444433 36888855 46651 1100 00000 0 0
Q ss_pred cCCCCCccchhhhH---HHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCccccccc
Q 009217 252 QDNTKTHLVNILKG---GVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENY 328 (540)
Q Consensus 252 ~~~~~~~~~~~~~~---~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~ 328 (540)
+ ..+... ....+| ++++|...++.+.. .+..+++|+.+||||||++.|.|..+.
T Consensus 326 e-------~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~---------~lgip~~KI~VIyNGVD~~rf~p~~~~------ 382 (578)
T PRK15490 326 E-------YEPLYQALAVVPGVD-FMSNNHCVTRHYAD---------WLKLEAKHFQVVYNGVLPPSTEPSSEV------ 382 (578)
T ss_pred H-------HHHhhhhceeEecch-hhhccHHHHHHHHH---------HhCCCHHHEEEEeCCcchhhcCccchh------
Confidence 0 000000 122334 55666665555433 122367899999999999888775210
Q ss_pred CcccccCcHHHHHHHHHH--hCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHH
Q 009217 329 CAEDMKGKTVCKVTLQQQ--LGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVS 404 (540)
Q Consensus 329 ~~~~~~~k~~~~~~lr~~--~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~ 404 (540)
....++. .+++. +.++++++||+.++||...+++++..+.+ ++++|+|+|+|+ ..+++++
T Consensus 383 -----------~~~~r~~~~~~l~~--~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~---~~eeLk~ 446 (578)
T PRK15490 383 -----------PHKIWQQFTQKTQD--ADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGD---LRAEAQK 446 (578)
T ss_pred -----------hHHHHHHhhhccCC--CCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCch---hHHHHHH
Confidence 1112222 33332 34789999999999999999999988765 489999999875 4677888
Q ss_pred HHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccce
Q 009217 405 FQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSR 483 (540)
Q Consensus 405 l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G 483 (540)
++++++. ++|+|+|.. +++..+|+.+|+||+||.+|+||++++|||+||+|||++++ ||.+|+|. +|.+|
T Consensus 447 la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdv--GG~~EiV~-----dG~nG 517 (578)
T PRK15490 447 RAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPA--GGSAECFI-----EGVSG 517 (578)
T ss_pred HHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCC--CCcHHHcc-----cCCcE
Confidence 8888875 899998763 34678999999999999999999999999999999999999 99999997 46778
Q ss_pred eecCCCCHHHHHHHHH---HHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHHH
Q 009217 484 FISSTFGNISLSQALE---EIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 484 ~l~~~~d~~~la~ai~---~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~lY~~ 536 (540)
+++++.|+.++++++. .+.++.+....+++++++ ++|||+.|+.+ |.++|..
T Consensus 518 ~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~-y~ki~~~ 575 (578)
T PRK15490 518 FILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGT-FVKTIAS 575 (578)
T ss_pred EEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH-HHHHHHh
Confidence 9999999888888763 344455555567777654 88999999999 6999974
No 41
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.2e-36 Score=318.49 Aligned_cols=295 Identities=14% Similarity=0.109 Sum_probs=218.9
Q ss_pred CCCCEEEEcCC-chhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchh
Q 009217 184 KQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNI 262 (540)
Q Consensus 184 ~~pDIIH~h~~-~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 262 (540)
.++||||+|+. .+++++.+++. ..++|+|+|.|+....... ..+.........+. ..+. .-...+
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~------~~~~p~I~t~Hg~~~~e~~--~~~~~~~~~~~~~~-----~~~~-~~~~~l 237 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKA------RRGTPFLLTEHGIYTRERK--IELLQADWEMSYFR-----RLWI-RFFESL 237 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHH------HhCCCEEEecCCccHHHHH--HHHHhcccchHHHH-----HHHH-HHHHHH
Confidence 57899999973 34455444433 2689999999985321000 00000000000000 0000 001234
Q ss_pred hhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHH
Q 009217 263 LKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVT 342 (540)
Q Consensus 263 ~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~ 342 (540)
.+.+++.||.|+++|+...+.... .| .+++|+.+||||+|.+.|.|....
T Consensus 238 ~~~~~~~ad~Ii~~s~~~~~~~~~--~g--------~~~~ki~vIpNgid~~~f~~~~~~-------------------- 287 (475)
T cd03813 238 GRLAYQAADRITTLYEGNRERQIE--DG--------ADPEKIRVIPNGIDPERFAPARRA-------------------- 287 (475)
T ss_pred HHHHHHhCCEEEecCHHHHHHHHH--cC--------CCHHHeEEeCCCcCHHHcCCcccc--------------------
Confidence 456788999999999987654332 22 246799999999999888764210
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCC-ChhHHHHHHHHHHHhCC-CcEEEEE
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNK-LPSASRALVSFQEELKD-GIVIFVD 418 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~-~~~~~~~l~~l~~~~~~-~~v~f~~ 418 (540)
.. ..+.+.++++||+.+.||++.+++|++.+.+ ++++|+|+|+++ ++.+.+++++++++++. ++|+|+|
T Consensus 288 -----~~--~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G 360 (475)
T cd03813 288 -----RP--EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG 360 (475)
T ss_pred -----cc--CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC
Confidence 01 1245789999999999999999999998875 489999999874 45677889999988875 7999987
Q ss_pred ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCC-ccccceeecCCCCHHHHHHH
Q 009217 419 SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE-STRFSRFISSTFGNISLSQA 497 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~-~~g~~G~l~~~~d~~~la~a 497 (540)
.+++..+|+.+|++|+||..|+||++++|||+||+|||+|+. ||++|++.+... .-|.+|+++++.|+++++++
T Consensus 361 ---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~--g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~a 435 (475)
T cd03813 361 ---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDV--GSCRELIEGADDEALGPAGEVVPPADPEALARA 435 (475)
T ss_pred ---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCC--CChHHHhcCCcccccCCceEEECCCCHHHHHHH
Confidence 344668999999999999999999999999999999999998 999999975210 01457899999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHH
Q 009217 498 LEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYT 535 (540)
Q Consensus 498 i~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~lY~ 535 (540)
|.++++|++.++++++++++ +.|+|+.++++ |.++|+
T Consensus 436 i~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~-y~~lY~ 475 (475)
T cd03813 436 ILRLLKDPELRRAMGEAGRKRVERYYTLERMIDS-YRRLYL 475 (475)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHhC
Confidence 99999999999999998865 78999999999 699995
No 42
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=3.3e-35 Score=300.50 Aligned_cols=366 Identities=16% Similarity=0.165 Sum_probs=247.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+|++.+.| ..||.+.++.+|+++|+++||+|+++++......... . ..
T Consensus 1 kIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~-------------------------~~ 51 (375)
T cd03821 1 KILHVIPSFDP--KYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLV--A-------------------------LN 51 (375)
T ss_pred CeEEEcCCCCc--ccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchh--h-------------------------cc
Confidence 69999998776 4699999999999999999999999997654321110 0 00
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcC-CchhhHHHHHHHHHhhcCCCCCc
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~-~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
.......... ....... . . ..+.............+||+||+|+ |........... +..++|
T Consensus 52 ~~~~~~~~~~--~~~~~~~--~-------~-~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~-----~~~~~~ 114 (375)
T cd03821 52 GVPVKLFSIN--VAYGLNL--A-------R-YLFPPSLLAWLRLNIREADIVHVHGLWSYPSLAAARAA-----RKYGIP 114 (375)
T ss_pred Cceeeecccc--hhhhhhh--h-------h-hccChhHHHHHHHhCCCCCEEEEecccchHHHHHHHHH-----HHhCCC
Confidence 0000000000 0000000 0 0 0000111112222346899999998 432222121111 126789
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
++++.|+........... +. ... ......+..+..++.++++|..........
T Consensus 115 ~i~~~~~~~~~~~~~~~~----------~~---~~~-----~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~--------- 167 (375)
T cd03821 115 YVVSPHGMLDPWALPHKA----------LK---KRL-----AWFLFERRLLQAAAAVHATSEQEAAEIRRL--------- 167 (375)
T ss_pred EEEEccccccccccccch----------hh---hHH-----HHHHHHHHHHhcCCEEEECCHHHHHHHHhh---------
Confidence 999999753211100000 00 000 001233455677888888886655443321
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
....++.+||||+|.+.|.+.. ... .++.++.+. +.+.++++||+.+.||++.+++|
T Consensus 168 --~~~~~~~vi~~~~~~~~~~~~~------------------~~~-~~~~~~~~~--~~~~i~~~G~~~~~K~~~~li~a 224 (375)
T cd03821 168 --GLKAPIAVIPNGVDIPPFAALP------------------SRG-RRRKFPILP--DKRIILFLGRLHPKKGLDLLIEA 224 (375)
T ss_pred --CCcccEEEcCCCcChhccCcch------------------hhh-hhhhccCCC--CCcEEEEEeCcchhcCHHHHHHH
Confidence 1467899999999998876642 111 145555443 45889999999999999999999
Q ss_pred HHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 377 VRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 377 ~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
+..+.+ .+++|+++|.++ ......++.+++.++. ++|+|+|..+.+++..+|+.||++++||.+|+||++++|||+
T Consensus 225 ~~~l~~~~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama 303 (375)
T cd03821 225 FAKLAERFPDWHLVIAGPDE-GGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALA 303 (375)
T ss_pred HHHhhhhcCCeEEEEECCCC-cchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHh
Confidence 999886 589999999764 3455566666566654 789999999988888999999999999999999999999999
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHH
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 529 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 529 (540)
||+|||+++. ||..|++.+ .+|++.+. ++++++++|..+++|++.++++++++++ ++|||+.+++++
T Consensus 304 ~G~PvI~~~~--~~~~~~~~~------~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 304 CGTPVVTTDK--VPWQELIEY------GCGWVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred cCCCEEEcCC--CCHHHHhhc------CceEEeCC-ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 9999999998 999999874 22466654 5589999999999999999999888754 899999999984
No 43
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=100.00 E-value=1.2e-37 Score=299.79 Aligned_cols=232 Identities=29% Similarity=0.506 Sum_probs=175.4
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeee------eecCCeeeeeEE
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECY------SYFNGQLHANKI 131 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~ 131 (540)
|||+||+|+.|+.++||+|+++.+|+++|+++||+|+||+|.|+..+... .....+. .+. +.+.. ...+++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~-~~~~~~~-~~~~~~~~~v~~~~-~~~~~v 77 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEY-FQLEPVR-RLSVPFGGPVPVGV-WYEVRV 77 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHC-TTEEEEE-EES-STTCEEEEE-----EEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhh-hcceEEE-Eecccccccccccc-ceEEEE
Confidence 79999999999999999999999999999999999999999997655432 1122111 111 11222 256788
Q ss_pred EEEEEcCeeEEEEccCCCCCCCCCCCCCC-----CCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHH
Q 009217 132 WIGVVSGIGVTFIQPLHYSSFFNRESVYG-----YSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDI 206 (540)
Q Consensus 132 ~~~~~~gv~v~~i~~~~~~~~~~~~~~y~-----~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~ 206 (540)
++...+|++++++++ +.+|.+..+|+ |.|+..||++|++++++++++++++|||||+|||+|+++|.+++..
T Consensus 78 ~~~~~~~v~v~~i~~---~~~f~r~~iY~~~~~~~~d~~~rf~~fs~a~le~~~~l~~~pDIIH~hDW~tal~p~~lk~~ 154 (245)
T PF08323_consen 78 YRYPVDGVPVYFIDN---PEYFDRPGIYGDNGGDYPDNAERFAFFSRAALELLKKLGWKPDIIHCHDWHTALAPLYLKER 154 (245)
T ss_dssp EEEEETTEEEEEEES---HHHHGSSSSSBSTSSBHTTHHHHHHHHHHHHHHHHCTCT-S-SEEEEECGGGTTHHHHHHHC
T ss_pred EEEEcCCccEEEecC---hhhccccceeccCCCcchhHHHHHHHHHHHHHHHHHhhCCCCCEEEecCchHHHHHHHhccc
Confidence 999999999999984 45888888885 5899999999999999999988789999999999999999999875
Q ss_pred Hhhc-CCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhh
Q 009217 207 FVKQ-GLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRI 285 (540)
Q Consensus 207 ~~~~-~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~ 285 (540)
+... .+.++|+|+|+||+.+||.++...+..+|+++..+...+.++++ ..+|+++.++.+||+|+|||++|++|+.
T Consensus 155 ~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~---~~in~lk~gi~~AD~v~TVS~~Ya~Ei~ 231 (245)
T PF08323_consen 155 YQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFY---GQINFLKAGIVYADKVTTVSPTYAREIQ 231 (245)
T ss_dssp CSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEET---TEEEHHHHHHHHSSEEEESSHHHHHHTT
T ss_pred cccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccccccc---cccCHHHHHHHhcCEeeeCCHHHHHHHh
Confidence 4321 23479999999999999999888778889887655445555555 5799999999999999999999999999
Q ss_pred hcccCCCchHHhh
Q 009217 286 IRSLSHGLESTLA 298 (540)
Q Consensus 286 ~~~~~~gl~~~l~ 298 (540)
...+|.||++.|+
T Consensus 232 ~~~~g~GL~~~l~ 244 (245)
T PF08323_consen 232 TPEFGEGLEGLLR 244 (245)
T ss_dssp SHHHHTT-HHHHH
T ss_pred CcccCCChHHHhc
Confidence 9888999998774
No 44
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=3.5e-35 Score=300.63 Aligned_cols=350 Identities=15% Similarity=0.127 Sum_probs=242.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||+++++.+ ..||.+.++.+++++|.+.||+|+++++........ ..+. ..
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~--~~~~-----------------------~~ 51 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYD--DEIE-----------------------KL 51 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchH--HHHH-----------------------Hc
Confidence 699998865 369999999999999999999999999865421100 0000 12
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc-
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR- 216 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p- 216 (540)
|+.++.+.+. . ... ..+.+...+.++ ..+|||||+|......++.++.. ..+.|
T Consensus 52 ~~~~~~~~~~-------~-------~~~---~~~~~~~~~~~~--~~~~Dvv~~~~~~~~~~~~~~~~------~~~~~~ 106 (358)
T cd03812 52 GGKIYYIPAR-------K-------KNP---LKYFKKLYKLIK--KNKYDIVHVHGSSASGFILLAAK------KAGVKV 106 (358)
T ss_pred CCeEEEecCC-------C-------ccH---HHHHHHHHHHHh--cCCCCEEEEeCcchhHHHHHHHh------hCCCCe
Confidence 4444443210 0 001 111223333333 36899999998654444333322 13344
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
++++.|+.......... .. ....+.+...+.+|.++++|+..++.+... .
T Consensus 107 ~v~~~~~~~~~~~~~~~-----------------~~-----~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~-~------- 156 (358)
T cd03812 107 RIAHSHNTSDSHDKKKK-----------------IL-----KYKVLRKLINRLATDYLACSEEAGKWLFGK-V------- 156 (358)
T ss_pred EEEEeccccccccccch-----------------hh-----HHHHHHHHHHhcCCEEEEcCHHHHHHHHhC-C-------
Confidence 57788875432110000 00 001223455678999999999877765431 1
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
...++.+||||+|.+.|.+... .+.. ++..+... +.+.++|+||+.++||++.+++|
T Consensus 157 ---~~~~~~vi~ngvd~~~~~~~~~-----------------~~~~-~~~~~~~~--~~~~i~~vGr~~~~Kg~~~li~a 213 (358)
T cd03812 157 ---KNKKFKVIPNGIDLEKFIFNEE-----------------IRKK-RRELGILE--DKFVIGHVGRFSEQKNHEFLIEI 213 (358)
T ss_pred ---CcccEEEEeccCcHHHcCCCch-----------------hhhH-HHHcCCCC--CCEEEEEEeccccccChHHHHHH
Confidence 3579999999999987765421 1111 34444443 45889999999999999999999
Q ss_pred HHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 377 VRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 377 ~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
+..+.+ .+++|+|+|+|+ ..+.+++.+++++. ++|+|+|. .+++..+|+.||++|+||.+|+||++++|||+
T Consensus 214 ~~~l~~~~~~~~l~ivG~g~---~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma 288 (358)
T cd03812 214 FAELLKKNPNAKLLLVGDGE---LEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQA 288 (358)
T ss_pred HHHHHHhCCCeEEEEEeCCc---hHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHH
Confidence 999976 489999999875 35567777766654 78998876 34466899999999999999999999999999
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHH
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCN 527 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~ 527 (540)
+|+|||+++. ||.+|++.++ + |++..+.++++++++|.++++||+..+++..++..+..+|+....
T Consensus 289 ~G~PvI~s~~--~~~~~~i~~~----~--~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (358)
T cd03812 289 SGLPCILSDT--ITKEVDLTDL----V--KFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGLDADDEANT 354 (358)
T ss_pred hCCCEEEEcC--CchhhhhccC----c--cEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccchhhhhhhH
Confidence 9999999999 9999998741 1 466667778999999999999999999998888766556655443
No 45
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=5.6e-35 Score=297.70 Aligned_cols=358 Identities=16% Similarity=0.165 Sum_probs=256.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++++..+.+ ||.+.++..|+++|.+.||+|.+++........+ .+. ..
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---~~~-----------------------~~ 50 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---ELE-----------------------EA 50 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---HHH-----------------------hc
Confidence 69999987644 9999999999999999999999998643221100 000 13
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
|++++.+... . . . .. ..+...+.+.+++ .+||+||+|.+.+.+.+.+.... ..++|+
T Consensus 51 ~i~v~~~~~~-------~-~-~---~~----~~~~~~~~~~~~~--~~~div~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (365)
T cd03807 51 GVPVYCLGKR-------P-G-R---PD----PGALLRLYKLIRR--LRPDVVHTWMYHADLYGGLAARL-----AGVPPV 107 (365)
T ss_pred CCeEEEEecc-------c-c-c---cc----HHHHHHHHHHHHh--hCCCEEEeccccccHHHHHHHHh-----cCCCcE
Confidence 5666555311 0 0 0 00 1112333444443 68999999987665554444321 157899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
+++.|+...... +.... ....+.+.....+|.++++|+...+..... + +
T Consensus 108 i~~~~~~~~~~~---------~~~~~--------------~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~--~--~---- 156 (365)
T cd03807 108 IWGIRHSDLDLG---------KKSTR--------------LVARLRRLLSSFIPLIVANSAAAAEYHQAI--G--Y---- 156 (365)
T ss_pred EEEecCCccccc---------chhHh--------------HHHHHHHHhccccCeEEeccHHHHHHHHHc--C--C----
Confidence 999998643210 00000 011233344566888899998877665432 1 1
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
...++.++|||+|...|.+... .+...+++++++. +.+.++++||+.+.||++.+++|+
T Consensus 157 --~~~~~~vi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~i~~~G~~~~~K~~~~li~a~ 215 (365)
T cd03807 157 --PPKKIVVIPNGVDTERFSPDLD-----------------ARARLREELGLPE--DTFLIGIVARLHPQKDHATLLRAA 215 (365)
T ss_pred --ChhheeEeCCCcCHHhcCCccc-----------------chHHHHHhcCCCC--CCeEEEEecccchhcCHHHHHHHH
Confidence 4578999999999887765421 2334566777764 357899999999999999999999
Q ss_pred HHHHh--cCcEEEEEecCCChhHHHHHHHHHH-HhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 378 RGAKM--RGIQFVFTGTNKLPSASRALVSFQE-ELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 378 ~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~-~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
..+.+ .+++|+++|.++. ...++.... .++. ++|.+.+.. +++..+|+.||++++||.+|+||++++|||+
T Consensus 216 ~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 290 (365)
T cd03807 216 ALLLKKFPNARLLLVGDGPD---RANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMA 290 (365)
T ss_pred HHHHHhCCCeEEEEecCCcc---hhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHh
Confidence 98876 4799999997753 233333333 4443 688887643 3467899999999999999999999999999
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHH
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIH 530 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y 530 (540)
||+|||+++. ||..|++.+ +|+++++.|+++++++|..+++|++.+.++++++.+ ++|||+.++++ |
T Consensus 291 ~g~PvI~~~~--~~~~e~~~~-------~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~ 360 (365)
T cd03807 291 CGLPVVATDV--GDNAELVGD-------TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEA-Y 360 (365)
T ss_pred cCCCEEEcCC--CChHHHhhc-------CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH-H
Confidence 9999999998 999999863 358999999999999999999999999999888765 78999999999 5
Q ss_pred HHHHH
Q 009217 531 ISAYT 535 (540)
Q Consensus 531 ~~lY~ 535 (540)
.++|+
T Consensus 361 ~~~y~ 365 (365)
T cd03807 361 EELYR 365 (365)
T ss_pred HHHhC
Confidence 99984
No 46
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=9.8e-35 Score=296.65 Aligned_cols=342 Identities=15% Similarity=0.122 Sum_probs=248.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+++..|+| |.+.++.+++++|.++||+|+|+++......... .... ..
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~-----------------------~~ 51 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVH-PEDR-----------------------AE 51 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccc-cccc-----------------------cc
Confidence 69999987643 3789999999999999999999997654321100 0000 00
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
+..+ .+. ........+...+...++ ..+|||||+|.+........+... +.++|+
T Consensus 52 ~~~~---------~~~---------~~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~~-----~~~~~~ 106 (355)
T cd03799 52 LART---------RYL---------ARSLALLAQALVLARELR--RLGIDHIHAHFGTTPATVAMLASR-----LGGIPY 106 (355)
T ss_pred ccch---------HHH---------HHHHHHHHHHHHHHHHHH--hcCCCEEEECCCCchHHHHHHHHH-----hcCCCE
Confidence 0000 000 000111112222333333 368999999985443332333221 247899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
++|+|+...... . .....+..++.+|.++++|+..++.+.... +
T Consensus 107 ~~~~~~~~~~~~------------------------~----~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~-~------- 150 (355)
T cd03799 107 SFTAHGKDIFRS------------------------P----DAIDLDEKLARADFVVAISEYNRQQLIRLL-G------- 150 (355)
T ss_pred EEEEeccccccc------------------------C----chHHHHHHHhhCCEEEECCHHHHHHHHHhc-C-------
Confidence 999996432100 0 002455678889999999999888765421 1
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
....++.+||||+|.+.|.+.. .. ...+.+.++|+|++.+.||++.+++++
T Consensus 151 -~~~~~~~vi~~~~d~~~~~~~~--------------------------~~--~~~~~~~i~~~g~~~~~k~~~~l~~~~ 201 (355)
T cd03799 151 -CDPDKIHVVHCGVDLERFPPRP--------------------------PP--PPGEPLRILSVGRLVEKKGLDYLLEAL 201 (355)
T ss_pred -CCcccEEEEeCCcCHHHcCCcc--------------------------cc--ccCCCeEEEEEeeeccccCHHHHHHHH
Confidence 1467899999999988776531 00 012346799999999999999999999
Q ss_pred HHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCC------CCCchHH
Q 009217 378 RGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFH------DPLLQVP 448 (540)
Q Consensus 378 ~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~------E~fglv~ 448 (540)
..+.+ .+++|+++|.++. ...+++++++++. ++|+|.|..+.+++..+|+.||++++||.+ |+||+++
T Consensus 202 ~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~ 278 (355)
T cd03799 202 ALLKDRGIDFRLDIVGDGPL---RDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVL 278 (355)
T ss_pred HHHhhcCCCeEEEEEECCcc---HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHH
Confidence 99876 4899999997753 4567777777653 789999999888899999999999999998 9999999
Q ss_pred HHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHH
Q 009217 449 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDAD 525 (540)
Q Consensus 449 lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~ 525 (540)
+|||+||+|+|+++. |+.+|++.+ +.+|+++++.|+++++++|..+++|++.+.++++++++ ++|||+.+
T Consensus 279 ~Ea~a~G~Pvi~~~~--~~~~~~i~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~ 351 (355)
T cd03799 279 MEAMAMGLPVISTDV--SGIPELVED-----GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQ 351 (355)
T ss_pred HHHHHcCCCEEecCC--CCcchhhhC-----CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999998 999999874 44579999999999999999999999999999998865 78999999
Q ss_pred HHH
Q 009217 526 CND 528 (540)
Q Consensus 526 a~~ 528 (540)
+++
T Consensus 352 ~~~ 354 (355)
T cd03799 352 AAR 354 (355)
T ss_pred hhc
Confidence 875
No 47
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=1.6e-34 Score=295.71 Aligned_cols=355 Identities=17% Similarity=0.119 Sum_probs=241.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++|+. ++|. .||++.++.+|+++|.++||+|++++.......... ... ..
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~---~~~----------------------~~ 52 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY---GGE----------------------QE 52 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC---CCc----------------------cc
Confidence 6999976 4563 699999999999999999999999986543211100 000 00
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
+.. .+. . + .... .....+.+++ .+||+||+|.|.+.+.+.............++|+
T Consensus 53 ~~~--~~~------~------~----~~~~----~~~~~~~~~~--~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (366)
T cd03822 53 VVR--VIV------L------D----NPLD----YRRAARAIRL--SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPV 108 (366)
T ss_pred cee--eee------c------C----Cchh----HHHHHHHHhh--cCCCEEEEeeccccccchhhHHHHHHHhhcCCCE
Confidence 000 000 0 0 0000 0223333433 6899999987543322111111110011268999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
|+++|+..... ... ....+.+..++.+|.++++|....++.....
T Consensus 109 i~~~h~~~~~~------------~~~--------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--------- 153 (366)
T cd03822 109 VVTLHTVLLHE------------PRP--------------GDRALLRLLLRRADAVIVMSSELLRALLLRA--------- 153 (366)
T ss_pred EEEEecCCccc------------cch--------------hhhHHHHHHHhcCCEEEEeeHHHHHHHHhhc---------
Confidence 99999851100 000 0123455667889999999833333322110
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
...++.+||||+|...+.+.. .. ++...+ .+.+.++|+||+.+.||++.+++|+
T Consensus 154 --~~~~~~~i~~~~~~~~~~~~~-------------------~~---~~~~~~--~~~~~i~~~G~~~~~K~~~~ll~a~ 207 (366)
T cd03822 154 --YPEKIAVIPHGVPDPPAEPPE-------------------SL---KALGGL--DGRPVLLTFGLLRPYKGLELLLEAL 207 (366)
T ss_pred --CCCcEEEeCCCCcCcccCCch-------------------hh---HhhcCC--CCCeEEEEEeeccCCCCHHHHHHHH
Confidence 137999999999976654431 00 222222 2357899999999999999999999
Q ss_pred HHHHh--cCcEEEEEecCCChhHHHHHH---HHHHHhCC-CcEEEEEe-cChHHHHHHHhcCCEEEECCCCC--CCchHH
Q 009217 378 RGAKM--RGIQFVFTGTNKLPSASRALV---SFQEELKD-GIVIFVDS-YDDALLHLIFSGSDIILCHSFHD--PLLQVP 448 (540)
Q Consensus 378 ~~l~~--~~~~lvi~G~g~~~~~~~~l~---~l~~~~~~-~~v~f~~~-~~~~~~~~~~~~aDi~v~PS~~E--~fglv~ 448 (540)
..+.+ .+++|+++|.+... ...... +++++++. ++|.|+++ .+.+++..+|+.||++++||.+| +||+++
T Consensus 208 ~~~~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~ 286 (366)
T cd03822 208 PLLVAKHPDVRLLVAGETHPD-LERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVL 286 (366)
T ss_pred HHHHhhCCCeEEEEeccCccc-hhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHH
Confidence 99876 48999999976531 111111 12444443 79999988 78888889999999999999999 999999
Q ss_pred HHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHH
Q 009217 449 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADC 526 (540)
Q Consensus 449 lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a 526 (540)
+|||+||+|+|+++. || .+.+.+ +.+|+++++.|+++++++|..+++|++.+.++++++.. +.|||+.++
T Consensus 287 ~Ea~a~G~PvI~~~~--~~-~~~i~~-----~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~ 358 (366)
T cd03822 287 AYAIGFGKPVISTPV--GH-AEEVLD-----GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVA 358 (366)
T ss_pred HHHHHcCCCEEecCC--CC-hheeee-----CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHH
Confidence 999999999999998 78 666653 33468999999999999999999999999999998865 569999999
Q ss_pred HHHHHHHHH
Q 009217 527 NDIHISAYT 535 (540)
Q Consensus 527 ~~~y~~lY~ 535 (540)
++ |.++|+
T Consensus 359 ~~-~~~~~~ 366 (366)
T cd03822 359 ER-YLRLLA 366 (366)
T ss_pred HH-HHHHhC
Confidence 99 598874
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.2e-34 Score=296.02 Aligned_cols=360 Identities=18% Similarity=0.148 Sum_probs=251.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++|+..|.|. .||.+.++..|+++|.++||+|+++++......... . .
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~---------------------------~ 50 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP-A---------------------------R 50 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC-C---------------------------C
Confidence 799999888774 599999999999999999999999997643211100 0 0
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCch-hhHHHHHHHHHhhcCCCCCc
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWET-AIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~-~~~~~~~~~~~~~~~~~~~p 216 (540)
.+.+..+.. + .+. ...+.. .. .....+.++ ..+||+||+|.... ++.+..+.. ..++|
T Consensus 51 ~~~~~~~~~---~-~~~-~~~~~~-~~-------~~~~~~~~~--~~~pdii~~~~~~~~~~~~~~~~~------~~~~~ 109 (364)
T cd03814 51 VVPVPSVPL---P-GYP-EIRLAL-PP-------RRRVRRLLD--AFAPDVVHIATPGPLGLAALRAAR------RLGIP 109 (364)
T ss_pred ceeeccccc---C-ccc-ceEecc-cc-------hhhHHHHHH--hcCCCEEEEeccchhhHHHHHHHH------HcCCC
Confidence 011111100 0 000 000000 00 012222232 36899999996432 222222211 26899
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
+++++|+.... ......... ... ......+...+.+|.++++|+...+.... .
T Consensus 110 ~i~~~~~~~~~------~~~~~~~~~--------~~~----~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~------- 162 (364)
T cd03814 110 VVTSYHTDFPE------YLRYYGLGP--------LSW----LAWAYLRWFHNRADRVLVPSPSLADELRA--R------- 162 (364)
T ss_pred EEEEEecChHH------Hhhhcccch--------HhH----hhHHHHHHHHHhCCEEEeCCHHHHHHHhc--c-------
Confidence 99999974210 000000000 000 01245566678899999999988764322 1
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
...++.+++||+|.+.|.|... +...+++++ . .+.+.++++||+.+.||++.++++
T Consensus 163 ---~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~-~--~~~~~i~~~G~~~~~k~~~~~i~~ 218 (364)
T cd03814 163 ---GFRRVRLWPRGVDTELFHPRRR------------------DEALRARLG-P--PDRPVLLYVGRLAPEKNLEALLDA 218 (364)
T ss_pred ---CCCceeecCCCccccccCcccc------------------cHHHHHHhC-C--CCCeEEEEEeccccccCHHHHHHH
Confidence 2468999999999988876531 112234444 2 235789999999999999999999
Q ss_pred HHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcC
Q 009217 377 VRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG 455 (540)
Q Consensus 377 ~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G 455 (540)
+..+.+ .+++|+++|.|+. ...++ .. .++|.|.|..+.+++..+|+.||++++||..|+||++++|||+||
T Consensus 219 ~~~l~~~~~~~l~i~G~~~~---~~~~~----~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g 290 (364)
T cd03814 219 DLPLRRRPPVRLVIVGDGPA---RARLE----AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASG 290 (364)
T ss_pred HHHhhhcCCceEEEEeCCch---HHHHh----cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcC
Confidence 999876 4899999997753 23333 22 278999988888888999999999999999999999999999999
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHHHH
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISA 533 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~l 533 (540)
+|||+++. |+..|++.+ +.+|+++++.+.++++++|.++++|++.++++++++.+ ++|+|+.++++ ++++
T Consensus 291 ~PvI~~~~--~~~~~~i~~-----~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 362 (364)
T cd03814 291 LPVVAPDA--GGPADIVTD-----GENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDN-LLEA 362 (364)
T ss_pred CCEEEcCC--CCchhhhcC-----CcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHh
Confidence 99999998 999999874 44579999999999999999999999999999998876 68999999999 4988
Q ss_pred HH
Q 009217 534 YT 535 (540)
Q Consensus 534 Y~ 535 (540)
|+
T Consensus 363 ~~ 364 (364)
T cd03814 363 YR 364 (364)
T ss_pred hC
Confidence 84
No 49
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=2e-34 Score=300.58 Aligned_cols=370 Identities=12% Similarity=0.023 Sum_probs=244.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
-||++++.- .+|.+..+..++++|+++||+|+|+++..+....+. . ..
T Consensus 4 ~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~---~-----------------------~~ 51 (415)
T cd03816 4 KRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEI---L-----------------------SN 51 (415)
T ss_pred cEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHH---h-----------------------cC
Confidence 367777763 256677789999999999999999997643211100 0 12
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHH-HH---HHHHHHHHHHcCCCCCEEEEcCCch---hhHHHHHHHHHhh
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFT-YF---SRASLDYIVKSRKQPDVLHIHNWET---AIVGPLFWDIFVK 209 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~-~~---~~~~~~~~~~~~~~pDIIH~h~~~~---~~~~~~~~~~~~~ 209 (540)
+|+.++.+.... ..+.+ .....++. .. ....+..+.+ ..+|||||+|+... .+++.++..
T Consensus 52 ~~v~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Dvi~~~~~~~~~~~~~a~~~~~---- 118 (415)
T cd03816 52 PNITIHPLPPPP--QRLNK------LPFLLFAPLKVLWQFFSLLWLLYK-LRPADYILIQNPPSIPTLLIAWLYCL---- 118 (415)
T ss_pred CCEEEEECCCCc--ccccc------chHHHHHHHHHHHHHHHHHHHHHh-cCCCCEEEEeCCCCchHHHHHHHHHH----
Confidence 467777664210 00000 00111110 01 1122221222 35799999997322 222222222
Q ss_pred cCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhccc
Q 009217 210 QGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSL 289 (540)
Q Consensus 210 ~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~ 289 (540)
+.++|+|+|+|+..+.- . ..+..... .+.. -...+.+...+.+|.|+++|+..++.+.. .
T Consensus 119 --~~~~~~V~~~h~~~~~~------~-~~~~~~~~-----~~~~----~~~~~e~~~~~~ad~ii~vS~~~~~~l~~--~ 178 (415)
T cd03816 119 --LRRTKLIIDWHNYGYTI------L-ALKLGENH-----PLVR----LAKWYEKLFGRLADYNLCVTKAMKEDLQQ--F 178 (415)
T ss_pred --HhCCeEEEEcCCchHHH------H-hcccCCCC-----HHHH----HHHHHHHHHhhcCCEeeecCHHHHHHHHh--h
Confidence 26789999999753210 0 00100000 0000 01123445567899999999999887653 2
Q ss_pred CCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHH-------------HhCCCCCCCce
Q 009217 290 SHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ-------------QLGLSKDASTI 356 (540)
Q Consensus 290 ~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~-------------~~gl~~~~~~~ 356 (540)
+ .+.+|+.+||||. .+.|.|.... ..+..+++ ..++.. ++..
T Consensus 179 ~--------~~~~ki~vI~Ng~-~~~f~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 233 (415)
T cd03816 179 N--------NWKIRATVLYDRP-PEQFRPLPLE---------------EKHELFLKLAKTFLTRELRIGAVQLSE-ERPA 233 (415)
T ss_pred h--------ccCCCeeecCCCC-HHHceeCcHH---------------HHHHHHHhccccccccccccccceecC-CCce
Confidence 2 1578999999994 4667664210 01111111 112222 2346
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHh--------cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEe-cChHHHHH
Q 009217 357 VVGCIFSDVSDVFLENLKAVVRGAKM--------RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS-YDDALLHL 427 (540)
Q Consensus 357 lv~~vgrl~~~KG~~~Li~A~~~l~~--------~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~-~~~~~~~~ 427 (540)
+++++||+.++||++.|++|+..+.+ ++++|+|+|+|+ ..+.+++++++++.+++.++++ ++.++++.
T Consensus 234 vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~---~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~ 310 (415)
T cd03816 234 LLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP---LKEKYLERIKELKLKKVTIRTPWLSAEDYPK 310 (415)
T ss_pred EEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc---cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHH
Confidence 78889999999999999999998864 369999999885 3677888888877667777765 57888899
Q ss_pred HHhcCCEEEECC---CCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 428 IFSGSDIILCHS---FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 428 ~~~~aDi~v~PS---~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+|++||++++|+ ..|+||++++||||||+|||+++. ||.+|+|.+ |.+|++++ |+++|+++|..+++|
T Consensus 311 ~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~--~~~~eiv~~-----~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 311 LLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF--KCIDELVKH-----GENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred HHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC--CCHHHHhcC-----CCCEEEEC--CHHHHHHHHHHHHhc
Confidence 999999999764 358899999999999999999998 899999974 56678984 899999999999999
Q ss_pred ---HHHHHHHHHHHHh-ccCChHHHHHH
Q 009217 505 ---PLSWKRKIKDAML-QDFSWDADCND 528 (540)
Q Consensus 505 ---~~~~~~~~~~a~~-~~fsw~~~a~~ 528 (540)
++.+++|+++|++ ..++|+..-.+
T Consensus 382 ~~~~~~~~~m~~~~~~~~~~~~~~~~~~ 409 (415)
T cd03816 382 FPNRGKLNSLKKGAQEESELRWDENWDR 409 (415)
T ss_pred CCCHHHHHHHHHHHHHhhhcCHHHHHHH
Confidence 9999999999987 77888875444
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=1.3e-34 Score=295.03 Aligned_cols=358 Identities=17% Similarity=0.127 Sum_probs=243.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+++..++|. ..||.+.++..|+++|+++||+|+|+++......... .. .
T Consensus 1 kIl~i~~~~~~~-~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~--~~-------------------------~ 52 (359)
T cd03823 1 RILVVNHLYPPR-SVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDK--EV-------------------------I 52 (359)
T ss_pred CeeEEcccCCcc-cccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccc--cc-------------------------c
Confidence 699999877775 5799999999999999999999999997644322110 00 0
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
+......... ...........+.........+.....+.+++ .+||+||+|.+..... .+... .. ..++|+
T Consensus 53 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~-~~~~~-~~---~~~~~~ 123 (359)
T cd03823 53 GVVVYGRPID--EVLRSALPRDLFHLSDYDNPAVVAEFARLLED--FRPDVVHFHHLQGLGV-SILRA-AR---DRGIPI 123 (359)
T ss_pred cceeeccccc--cccCCCchhhhhHHHhccCHHHHHHHHHHHHH--cCCCEEEECCccchHH-HHHHH-HH---hcCCCE
Confidence 0001000000 00000000000000000001112333344443 6899999998532222 22111 11 257999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
|+++|+...... .. .. .....|.++++|+..++.+.....
T Consensus 124 i~~~hd~~~~~~--~~----------------~~--------------~~~~~d~ii~~s~~~~~~~~~~~~-------- 163 (359)
T cd03823 124 VLTLHDYWLICP--RQ----------------GL--------------FKKGGDAVIAPSRFLLDRYVANGL-------- 163 (359)
T ss_pred EEEEeeeeeecc--hh----------------hh--------------hccCCCEEEEeCHHHHHHHHHcCC--------
Confidence 999997532110 00 00 001128999999988776654211
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
...++.+|+||+|...+.+... +.+ .+.+.++++||+.+.||++.+++++
T Consensus 164 --~~~~~~vi~n~~~~~~~~~~~~--------------------------~~~--~~~~~i~~~G~~~~~k~~~~li~~~ 213 (359)
T cd03823 164 --FAEKISVIRNGIDLDRAKRPRR--------------------------APP--GGRLRFGFIGQLTPHKGVDLLLEAF 213 (359)
T ss_pred --CccceEEecCCcChhhcccccc--------------------------CCC--CCceEEEEEecCccccCHHHHHHHH
Confidence 2468999999999887654310 111 2357899999999999999999999
Q ss_pred HHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC-CCCCchHHHHHHhcCC
Q 009217 378 RGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPLKALKYGA 456 (540)
Q Consensus 378 ~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fglv~lEAma~G~ 456 (540)
..+.+.+++|+++|.++.. ....... .. .++|++.+.++.+++..+|+.||++++||. .|+||++++|||+||+
T Consensus 214 ~~l~~~~~~l~i~G~~~~~---~~~~~~~-~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~ 288 (359)
T cd03823 214 KRLPRGDIELVIVGNGLEL---EEESYEL-EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGV 288 (359)
T ss_pred HHHHhcCcEEEEEcCchhh---hHHHHhh-cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCC
Confidence 9987778999999977531 1111111 22 378999999988889999999999999998 7999999999999999
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~ 536 (540)
|||+++. ||..|++.+ +.+|+++++.|+++++++|.++++|++.++++++++++ .++++.++++ |+++|++
T Consensus 289 Pvi~~~~--~~~~e~i~~-----~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~ 359 (359)
T cd03823 289 PVIASDI--GGMAELVRD-----GVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEP-PRSIEDQAEE-YLKLYRS 359 (359)
T ss_pred CEEECCC--CCHHHHhcC-----CCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHH-hhhHHHHHHH-HHHHhhC
Confidence 9999998 999999874 45579999999999999999999999999999998864 4555999999 5999963
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1.8e-34 Score=295.19 Aligned_cols=367 Identities=17% Similarity=0.172 Sum_probs=254.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+++..|+|. .||.+..+..++++|.++||+|+++++.......... ..
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---------------------------~~ 51 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEE---------------------------VV 51 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccc---------------------------cc
Confidence 699999888774 6999999999999999999999999987654321100 00
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCC-chhhHHHHHHHHHhhcCCCCCc
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~-~~~~~~~~~~~~~~~~~~~~~p 216 (540)
++...... .....+. .. .+ .+.......++ ..+|||||+|+. ..+..+..++. ..++|
T Consensus 52 ~~~~~~~~----~~~~~~~-~~-------~~-~~~~~~~~~~~--~~~~Div~~~~~~~~~~~~~~~~~------~~~~~ 110 (374)
T cd03817 52 VVRPFRVP----TFKYPDF-RL-------PL-PIPRALIIILK--ELGPDIVHTHTPFSLGLLGLRVAR------KLGIP 110 (374)
T ss_pred cccccccc----cchhhhh-hc-------cc-cHHHHHHHHHh--hcCCCEEEECCchhhhhHHHHHHH------HcCCC
Confidence 00100000 0000000 00 00 01122222233 368999999973 22333222222 26899
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccc-hhhhHHHhhccceeeccccchhhhhhcccCCCchH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLV-NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 295 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~ 295 (540)
+|+++|+.... .......... .... ... .+.+..+..+|.++++|+..++.+.. .+
T Consensus 111 ~i~~~~~~~~~------~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~--~~----- 167 (374)
T cd03817 111 VVATYHTMYED------YTHYVPLGRL-------LARA---VVRRKLSRRFYNRCDAVIAPSEKIADLLRE--YG----- 167 (374)
T ss_pred EEEEecCCHHH------HHHHHhcccc-------hhHH---HHHHHHHHHHhhhCCEEEeccHHHHHHHHh--cC-----
Confidence 99999975310 0000000000 0000 011 35566788999999999987765543 11
Q ss_pred HhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHH
Q 009217 296 TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKA 375 (540)
Q Consensus 296 ~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~ 375 (540)
...++.++|||+|.+.+.+.. +...++.+++.. +.+.++++|++.+.||++.+++
T Consensus 168 ----~~~~~~vi~~~~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~i~~~G~~~~~k~~~~l~~ 222 (374)
T cd03817 168 ----VKRPIEVIPTGIDLDRFEPVD-------------------GDDERRKLGIPE--DEPVLLYVGRLAKEKNIDFLIR 222 (374)
T ss_pred ----CCCceEEcCCccchhccCccc-------------------hhHHHHhcCCCC--CCeEEEEEeeeecccCHHHHHH
Confidence 245699999999988776541 112245555543 3578999999999999999999
Q ss_pred HHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHH
Q 009217 376 VVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKAL 452 (540)
Q Consensus 376 A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAm 452 (540)
++..+.+ .+++|+++|.|+ ..+.+++++++++. ++|.|++.++.+++..+|+.||++++||..|++|++++|||
T Consensus 223 ~~~~~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~ 299 (374)
T cd03817 223 AFARLLKEEPDVKLVIVGDGP---EREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAM 299 (374)
T ss_pred HHHHHHHhCCCeEEEEEeCCc---hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHH
Confidence 9998876 579999999764 35667777776654 78999998898889999999999999999999999999999
Q ss_pred hcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHH
Q 009217 453 KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIH 530 (540)
Q Consensus 453 a~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y 530 (540)
+||+|||+++. |+..|++.+ |.+|+++++.+. +++++|..++++++.++++++++.+ ++|+ .+++ +
T Consensus 300 ~~g~PvI~~~~--~~~~~~i~~-----~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~-~ 367 (374)
T cd03817 300 AAGLPVVAVDA--PGLPDLVAD-----GENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKK-V 367 (374)
T ss_pred HcCCcEEEeCC--CChhhheec-----CceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHH-H
Confidence 99999999998 999999974 456799988887 9999999999999999999988875 4455 5566 3
Q ss_pred HHHHHHH
Q 009217 531 ISAYTAI 537 (540)
Q Consensus 531 ~~lY~~l 537 (540)
+++|+++
T Consensus 368 ~~~~~~~ 374 (374)
T cd03817 368 EKLYEEV 374 (374)
T ss_pred HHHHhcC
Confidence 7777653
No 52
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=1.6e-34 Score=296.96 Aligned_cols=382 Identities=18% Similarity=0.157 Sum_probs=260.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+|+..+.|. .||.+.++..++++|+++||+|+++++............ ......+
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 58 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG--------------------YKREEVD 58 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc--------------------ceEEecC
Confidence 699999987774 399999999999999999999999997644322110000 0011245
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCc-hhhHHHHHHHHHhhcCCCCCc
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWE-TAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~-~~~~~~~~~~~~~~~~~~~~p 216 (540)
+++++.+... .......+ ....++..|.......+.....+||+||+|.+. ....+..... ...++|
T Consensus 59 ~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~-----~~~~~~ 126 (394)
T cd03794 59 GVRVHRVPLP----PYKKNGLL---KRLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLA-----RLKGAP 126 (394)
T ss_pred CeEEEEEecC----CCCccchH---HHHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHH-----HhcCCC
Confidence 7777766421 00110000 111112222333333333125789999999732 2222122111 125889
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
+++++|+...... . ..+...... .... ....+.+..++.+|.++++|+..++.+.. .+
T Consensus 127 ~i~~~h~~~~~~~-----~-~~~~~~~~~----~~~~----~~~~~~~~~~~~~d~vi~~s~~~~~~~~~--~~------ 184 (394)
T cd03794 127 FVLEVRDLWPESA-----V-ALGLLKNGS----LLYR----LLRKLERLIYRRADAIVVISPGMREYLVR--RG------ 184 (394)
T ss_pred EEEEehhhcchhH-----H-HccCccccc----hHHH----HHHHHHHHHHhcCCEEEEECHHHHHHHHh--cC------
Confidence 9999998532110 0 000000000 0000 01234566788999999999998887652 11
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
.+..++.+||||+|...+.+.... .. +...... .+.+.++++|++.++||++.+++|
T Consensus 185 --~~~~~~~~i~~~~~~~~~~~~~~~------------------~~-~~~~~~~--~~~~~i~~~G~~~~~k~~~~l~~~ 241 (394)
T cd03794 185 --VPPEKISVIPNGVDLELFKPPPAD------------------ES-LRKELGL--DDKFVVLYAGNIGRAQGLDTLLEA 241 (394)
T ss_pred --CCcCceEEcCCCCCHHHcCCccch------------------hh-hhhccCC--CCcEEEEEecCcccccCHHHHHHH
Confidence 146799999999998776654210 00 2222222 345789999999999999999999
Q ss_pred HHHHHhc-CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCC-----chHHHH
Q 009217 377 VRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPL-----LQVPLK 450 (540)
Q Consensus 377 ~~~l~~~-~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~f-----glv~lE 450 (540)
+..+.+. +++|+++|.|+. .+.++++......++|.+++..+.+++..+|+.||++++||..|++ |.+++|
T Consensus 242 ~~~l~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~E 318 (394)
T cd03794 242 AALLKDRPDIRFLIVGDGPE---KEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFE 318 (394)
T ss_pred HHHHhhcCCeEEEEeCCccc---HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHH
Confidence 9998765 899999997753 3455554444444789999988888889999999999999998876 778999
Q ss_pred HHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHH
Q 009217 451 ALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCN 527 (540)
Q Consensus 451 Ama~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~ 527 (540)
||+||+|+|+++. ||..+.+.+ +.+|+++++.|+++++++|..+++|++.++++++++.+ ++|||+.+++
T Consensus 319 a~~~G~pvi~~~~--~~~~~~~~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 391 (394)
T cd03794 319 YMAAGKPVLASVD--GESAELVEE-----AGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAE 391 (394)
T ss_pred HHHCCCcEEEecC--CCchhhhcc-----CCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 9999999999998 899998874 34578999999999999999999999999999988875 6999999998
Q ss_pred H
Q 009217 528 D 528 (540)
Q Consensus 528 ~ 528 (540)
+
T Consensus 392 ~ 392 (394)
T cd03794 392 R 392 (394)
T ss_pred h
Confidence 8
No 53
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.8e-33 Score=294.21 Aligned_cols=230 Identities=14% Similarity=0.021 Sum_probs=184.3
Q ss_pred HHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHH
Q 009217 265 GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQ 344 (540)
Q Consensus 265 ~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr 344 (540)
...+.||.|+++|+..++.+.. .++ .+.++.+|+||+|.+.+.+..
T Consensus 216 ~~~~~ad~ii~nS~~t~~~l~~-~~~---------~~~~i~vvyp~vd~~~~~~~~------------------------ 261 (463)
T PLN02949 216 LVGRCAHLAMVNSSWTKSHIEA-LWR---------IPERIKRVYPPCDTSGLQALP------------------------ 261 (463)
T ss_pred HHcCCCCEEEECCHHHHHHHHH-HcC---------CCCCeEEEcCCCCHHHcccCC------------------------
Confidence 3457899999999988776643 111 235789999999976553210
Q ss_pred HHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh------cCcEEEEEecCCC---hhHHHHHHHHHHHhCC-CcE
Q 009217 345 QQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM------RGIQFVFTGTNKL---PSASRALVSFQEELKD-GIV 414 (540)
Q Consensus 345 ~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~------~~~~lvi~G~g~~---~~~~~~l~~l~~~~~~-~~v 414 (540)
.....+.+.++++||+.++||++.+++|+..+.+ ++++|+|+|++.. ..+.+++++++++++. ++|
T Consensus 262 ----~~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V 337 (463)
T PLN02949 262 ----LERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDV 337 (463)
T ss_pred ----ccccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcE
Confidence 0001123678999999999999999999998754 3799999997642 2345678888888764 799
Q ss_pred EEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccc-cceeccCCccccceeecCCCCHHH
Q 009217 415 IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR-HFAEFDHESTRFSRFISSTFGNIS 493 (540)
Q Consensus 415 ~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~-e~v~~~~~~~g~~G~l~~~~d~~~ 493 (540)
.|++..+.+++..+|+.||+++.||.+|+||++++|||+||+|||+++. ||.. |++.++. .|.+|++++ |+++
T Consensus 338 ~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~--gGp~~eIV~~~~--~g~tG~l~~--~~~~ 411 (463)
T PLN02949 338 EFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNS--AGPKMDIVLDED--GQQTGFLAT--TVEE 411 (463)
T ss_pred EEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCC--CCCcceeeecCC--CCcccccCC--CHHH
Confidence 9999999888999999999999999999999999999999999999998 8865 7776432 366788874 8899
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHhc
Q 009217 494 LSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAIKN 539 (540)
Q Consensus 494 la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l~~ 539 (540)
++++|.++++ +++.+++|++++++ ++|||+++++++ .++|+.+.|
T Consensus 412 la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~-~~~i~~l~~ 459 (463)
T PLN02949 412 YADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDF-KDAIRPILN 459 (463)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence 9999999998 67888899988865 789999999994 999998754
No 54
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=1.1e-34 Score=296.82 Aligned_cols=358 Identities=15% Similarity=0.154 Sum_probs=249.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++++..+.|. ..||++.++.+|+++|++.||+|+++++............ .
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--------------------------~ 53 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLR--------------------------A 53 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccch--------------------------h
Confidence 688888877664 4799999999999999999999999998755332110000 0
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
.... .. ..... . ...++..........+. ..+|||||+|++..... + ..++|+
T Consensus 54 ~~~~--~~---~~~~~-----~----~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~----~-------~~~~~~ 106 (365)
T cd03809 54 ALRL--LL---RLPRR-----L----LWGLLFLLRAGDRLLLL--LLGLDLLHSPHNTAPLL----R-------LRGVPV 106 (365)
T ss_pred cccc--cc---ccccc-----c----ccchhhHHHHHHHHHhh--hcCCCeeeecccccCcc----c-------CCCCCE
Confidence 0000 00 00000 0 00001011111122222 26899999998654333 1 368999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
++++|++........ .... ... ....+.+..++.+|.++++|+..++.+... ++
T Consensus 107 i~~~hd~~~~~~~~~-------~~~~------~~~-----~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~------- 160 (365)
T cd03809 107 VVTIHDLIPLRFPEY-------FSPG------FRR-----YFRRLLRRALRRADAIITVSEATKRDLLRY-LG------- 160 (365)
T ss_pred EEEeccchhhhCccc-------CCHH------HHH-----HHHHHHHHHHHHcCEEEEccHHHHHHHHHH-hC-------
Confidence 999998643110000 0000 000 112455677889999999999888876542 11
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
.+..++.++|||+|...+.+.. ... +...... .+.+.++++||+.+.||++.+++++
T Consensus 161 -~~~~~~~vi~~~~~~~~~~~~~-------------------~~~-~~~~~~~--~~~~~i~~~G~~~~~K~~~~~l~~~ 217 (365)
T cd03809 161 -VPPDKIVVIPLGVDPRFRPPPA-------------------EAE-VLRALYL--LPRPYFLYVGTIEPRKNLERLLEAF 217 (365)
T ss_pred -cCHHHEEeeccccCccccCCCc-------------------hHH-HHHHhcC--CCCCeEEEeCCCccccCHHHHHHHH
Confidence 1357899999999988776542 111 2222222 2357899999999999999999999
Q ss_pred HHHHhc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 378 RGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 378 ~~l~~~--~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
..+.+. +++|+++|.++. ......+.+ +..+. ++|++++.++.+++..+|+.||++++||.+|+||++++|||++
T Consensus 218 ~~~~~~~~~~~l~i~G~~~~-~~~~~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~ 295 (365)
T cd03809 218 ARLPAKGPDPKLVIVGKRGW-LNEELLARL-RELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMAC 295 (365)
T ss_pred HHHHHhcCCCCEEEecCCcc-ccHHHHHHH-HHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcC
Confidence 999875 589999997643 222222222 33332 7999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDI 529 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~ 529 (540)
|+|||+++. |++.|++.+ . |+++++.|+++++++|..+++|++.+.++++++.+ ++|||+++++++
T Consensus 296 G~pvI~~~~--~~~~e~~~~----~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~ 363 (365)
T cd03809 296 GTPVIASNI--SSLPEVAGD----A---ALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRT 363 (365)
T ss_pred CCcEEecCC--CCccceecC----c---eeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999998 999998852 2 57888999999999999999999999999988854 889999999984
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=3.3e-33 Score=284.16 Aligned_cols=368 Identities=20% Similarity=0.228 Sum_probs=261.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++++..++|. .||.+.++..|+++|.+.||+|+++++......... . ..
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~-----~----------------------~~ 51 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEE-----E----------------------VG 51 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCcee-----e----------------------ec
Confidence 699999987774 699999999999999999999999998654322110 0 00
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
........ . ..... .......+.......++ ..+||+||+|++........+.. ..++|+
T Consensus 52 ~~~~~~~~------~--~~~~~----~~~~~~~~~~~~~~~~~--~~~~Dii~~~~~~~~~~~~~~~~------~~~~~~ 111 (374)
T cd03801 52 GIVVVRPP------P--LLRVR----RLLLLLLLALRLRRLLR--RERFDVVHAHDWLALLAAALAAR------LLGIPL 111 (374)
T ss_pred CcceecCC------c--ccccc----hhHHHHHHHHHHHHHhh--hcCCcEEEEechhHHHHHHHHHH------hcCCcE
Confidence 00000000 0 00000 00011112233333333 35899999998765544332221 378999
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
++++|+........... ... .......+..+..+|.++++|+..++.+... ++
T Consensus 112 i~~~h~~~~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~-~~------- 164 (374)
T cd03801 112 VLTVHGLEFGRPGNELG-----LLL--------------KLARALERRALRRADRIIAVSEATREELREL-GG------- 164 (374)
T ss_pred EEEeccchhhccccchh-----HHH--------------HHHHHHHHHHHHhCCEEEEecHHHHHHHHhc-CC-------
Confidence 99999865422110000 000 0112345566788999999999888776542 11
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
....++.++|||+|...|.+.. ...+...... .+.+.++++|++.+.||++.+++|+
T Consensus 165 -~~~~~~~~i~~~~~~~~~~~~~--------------------~~~~~~~~~~--~~~~~i~~~g~~~~~k~~~~~i~~~ 221 (374)
T cd03801 165 -VPPEKITVIPNGVDTERFRPAP--------------------RAARRRLGIP--EDEPVILFVGRLVPRKGVDLLLEAL 221 (374)
T ss_pred -CCCCcEEEecCcccccccCccc--------------------hHHHhhcCCc--CCCeEEEEecchhhhcCHHHHHHHH
Confidence 1236899999999988776531 1122222222 2457899999999999999999999
Q ss_pred HHHHhc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 378 RGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 378 ~~l~~~--~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
..+.+. +++|+++|.++ ....+++++++++. ++|.+.+.++.+++..+|+.||++++||..|++|++++|||++
T Consensus 222 ~~~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~ 298 (374)
T cd03801 222 AKLRKEYPDVRLVIVGDGP---LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAA 298 (374)
T ss_pred HHHhhhcCCeEEEEEeCcH---HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHc
Confidence 988763 79999999553 45666666655543 7899999998888899999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHH---hccCChHHHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAM---LQDFSWDADCNDIHI 531 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~---~~~fsw~~~a~~~y~ 531 (540)
|+|+|+++. ++..|.+.+ +.+|+++++.|+++++++|.++++|++.+.++++++. .+.|+|+.++++ +.
T Consensus 299 g~pvI~~~~--~~~~~~~~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 370 (374)
T cd03801 299 GLPVVASDV--GGIPEVVED-----GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAAR-TE 370 (374)
T ss_pred CCcEEEeCC--CChhHHhcC-----CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHH-HH
Confidence 999999998 999999873 4557999999999999999999999999999999887 389999999999 48
Q ss_pred HHHH
Q 009217 532 SAYT 535 (540)
Q Consensus 532 ~lY~ 535 (540)
++|+
T Consensus 371 ~~~~ 374 (374)
T cd03801 371 EVYY 374 (374)
T ss_pred HhhC
Confidence 8874
No 56
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=3e-33 Score=282.68 Aligned_cols=339 Identities=15% Similarity=0.112 Sum_probs=237.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++++..+.| .||.+.++..|+++|++.||+|+++++.... .... . ..+
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~--~------------------------~~~ 50 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFY--E------------------------LDP 50 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCcc--c------------------------cCC
Confidence 69999987765 5999999999999999999999999976543 1000 0 012
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCC-Cc
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG-TR 216 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~-~p 216 (540)
++.+..+..... .+ .... ..+.....+.++ ..+||+||+|.+... .++... ..+ +|
T Consensus 51 ~~~~~~~~~~~~----~~--~~~~-------~~~~~~~~~~l~--~~~~d~i~~~~~~~~---~~~~~~-----~~~~~~ 107 (348)
T cd03820 51 KIKVIDLGDKRD----SK--LLAR-------FKKLRRLRKLLK--NNKPDVVISFLTSLL---TFLASL-----GLKIVK 107 (348)
T ss_pred ccceeecccccc----cc--hhcc-------ccchHHHHHhhc--ccCCCEEEEcCchHH---HHHHHH-----hhcccc
Confidence 333333321000 00 0000 011122333343 268999999986511 111111 123 59
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
++.+.|+........ . ......+..++.+|.++++|+..+. ... .
T Consensus 108 ~i~~~~~~~~~~~~~-------------------~------~~~~~~~~~~~~~d~ii~~s~~~~~-~~~-~-------- 152 (348)
T cd03820 108 LIVSEHNSPDAYKKR-------------------L------RRLLLRRLLYRRADAVVVLTEEDRA-LYY-K-------- 152 (348)
T ss_pred EEEecCCCccchhhh-------------------h------HHHHHHHHHHhcCCEEEEeCHHHHH-Hhh-c--------
Confidence 999999743211000 0 0011356678899999999987752 111 1
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
....++.+||||++...+.+. . ..+.+.++|+|++.+.||++.+++|
T Consensus 153 --~~~~~~~vi~~~~~~~~~~~~-----------------------------~--~~~~~~i~~~g~~~~~K~~~~l~~~ 199 (348)
T cd03820 153 --KFNKNVVVIPNPLPFPPEEPS-----------------------------S--DLKSKRILAVGRLVPQKGFDLLIEA 199 (348)
T ss_pred --cCCCCeEEecCCcChhhcccc-----------------------------C--CCCCcEEEEEEeeccccCHHHHHHH
Confidence 146789999999997654331 0 1234789999999999999999999
Q ss_pred HHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 377 VRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 377 ~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
+..+.+ .+++|+|+|.++. ...++++++.++. ++|.+.+. .+++..+|+.||++++||.+|+||++++|||+
T Consensus 200 ~~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a 274 (348)
T cd03820 200 WAKIAKKHPDWKLRIVGDGPE---REALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMA 274 (348)
T ss_pred HHHHHhcCCCeEEEEEeCCCC---HHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHH
Confidence 999874 5899999997753 4456666666654 67887765 45567899999999999999999999999999
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHH
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCND 528 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~ 528 (540)
||+|||+++.+ ++..+++. ++.+|+++++.|+++++++|..+++||+.++++++++.. ++|+|++++++
T Consensus 275 ~G~Pvi~~~~~-~~~~~~~~-----~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (348)
T cd03820 275 FGLPVISFDCP-TGPSEIIE-----DGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQ 345 (348)
T ss_pred cCCCEEEecCC-CchHhhhc-----cCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999871 34455565 344679999999999999999999999999999988754 88999999998
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=1.3e-32 Score=280.60 Aligned_cols=370 Identities=19% Similarity=0.242 Sum_probs=257.4
Q ss_pred EEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcC
Q 009217 59 IIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSG 138 (540)
Q Consensus 59 Il~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 138 (540)
||+++..++|. ..||.+.++..++++|.+.||+|+|+++.......... .. .
T Consensus 1 iLii~~~~p~~-~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~-------------------------~ 52 (377)
T cd03798 1 ILVISSLYPPP-NNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDL--LK-------------------------G 52 (377)
T ss_pred CeEeccCCCCC-CCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhh--cc-------------------------c
Confidence 57787765542 36999999999999999999999999976443221100 00 0
Q ss_pred eeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCc-hhhHHHHHHHHHhhcCCCCCce
Q 009217 139 IGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWE-TAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 139 v~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~-~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
........ ..... .............+.......++....+||+||+|... ...+...+.. ..++|+
T Consensus 53 ~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~------~~~~~~ 120 (377)
T cd03798 53 RLVGVERL---PVLLP---VVPLLKGPLLYLLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKR------KLGIPL 120 (377)
T ss_pred cccccccc---ccCcc---hhhccccchhHHHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHH------hcCCCE
Confidence 00000000 00000 00001111122233444555554224789999999632 3333222222 256899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
++++|+.......... ......+..+..+|.++++|+..++.+....
T Consensus 121 i~~~h~~~~~~~~~~~------------------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--------- 167 (377)
T cd03798 121 VVTLHGSDVNLLPRKR------------------------LLRALLRRALRRADAVIAVSEALADELKALG--------- 167 (377)
T ss_pred EEEeecchhcccCchh------------------------hHHHHHHHHHhcCCeEEeCCHHHHHHHHHhc---------
Confidence 9999985432110000 0134566778899999999998887665421
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
.+..++.++|||+|.+.|.+... .+. .+++.. .+.+.++++|++.+.||++.+++++
T Consensus 168 -~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~---~~~~~~--~~~~~i~~~g~~~~~k~~~~li~~~ 224 (377)
T cd03798 168 -IDPEKVTVIPNGVDTERFSPADR-----------------AEA---RKLGLP--EDKKVILFVGRLVPRKGIDYLIEAL 224 (377)
T ss_pred -CCCCceEEcCCCcCcccCCCcch-----------------HHH---HhccCC--CCceEEEEeccCccccCHHHHHHHH
Confidence 14689999999999988776521 000 222322 2457899999999999999999999
Q ss_pred HHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 378 RGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 378 ~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
+.+.+ .+++|+++|.++. ...++++.+.++. ++|.+.+.++.+++..+|+.||++++||..|++|++++|||+|
T Consensus 225 ~~~~~~~~~~~l~i~g~~~~---~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~ 301 (377)
T cd03798 225 ARLLKKRPDVHLVIVGDGPL---REALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMAC 301 (377)
T ss_pred HHHHhcCCCeEEEEEcCCcc---hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhc
Confidence 99876 3799999997643 4556666665543 7899999999888999999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHI 531 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~ 531 (540)
|+|+|+++. |+..|++.+ +.+|+++++.|+++++++|.+++++++. ++..++.. +.|+|+.++++ +.
T Consensus 302 G~pvI~~~~--~~~~~~~~~-----~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~-~~ 371 (377)
T cd03798 302 GLPVVATDV--GGIPEIITD-----GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAER-LL 371 (377)
T ss_pred CCCEEEecC--CChHHHhcC-----CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHH-HH
Confidence 999999998 999999874 4447899999999999999999999886 45444433 89999999999 59
Q ss_pred HHHHHH
Q 009217 532 SAYTAI 537 (540)
Q Consensus 532 ~lY~~l 537 (540)
++|+++
T Consensus 372 ~~~~~l 377 (377)
T cd03798 372 ELYREV 377 (377)
T ss_pred HHHhhC
Confidence 998764
No 58
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=100.00 E-value=4e-33 Score=287.69 Aligned_cols=432 Identities=13% Similarity=0.073 Sum_probs=247.6
Q ss_pred ccccHHHHHhHHHHHHHH-cCCeEEEEeecCCCCccccccCcceeeeeeee---ecCCeeeeeEEEEEEEcCeeEE-EEc
Q 009217 71 SIGSLASYVTGLSGALQR-KGHLVEVILPKYACMNLDGVQGLREIKAECYS---YFNGQLHANKIWIGVVSGIGVT-FIQ 145 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~gv~v~-~i~ 145 (540)
++||+-+++..=+..+++ .|-+..+|.|........+++.+..-...+.. ........+++=+..++|.|.. .++
T Consensus 14 KVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i~G~P~viL~D 93 (590)
T cd03793 14 KVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLIEGYPKVVLFD 93 (590)
T ss_pred cCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEcCCCCeEEEEe
Confidence 789999999999988764 78899999887552211111111100000000 0001111122222246777644 333
Q ss_pred cCCCCCCCCC--------------CCCCCCC--ChhHHHHHHHHHHHHHHHHc--CCCCCEEEEcCCchhhHHHHHHHHH
Q 009217 146 PLHYSSFFNR--------------ESVYGYS--DDFERFTYFSRASLDYIVKS--RKQPDVLHIHNWETAIVGPLFWDIF 207 (540)
Q Consensus 146 ~~~~~~~~~~--------------~~~y~~~--~~~~r~~~~~~~~~~~~~~~--~~~pDIIH~h~~~~~~~~~~~~~~~ 207 (540)
- ..++.+ +.+.++. ++..-|.+....+++.+... ..++||+|+|+|+++..+.+++..
T Consensus 94 ~---~~~~~~~~~~~~~lW~~~~i~s~~~~~d~nea~~fgy~~~~~i~~~~~~~~~~~~dViH~HeWm~g~a~~~lK~~- 169 (590)
T cd03793 94 I---GSAAWKLDEWKGELWELCGIGSPEGDRETNDAIIFGFLVAWFLGEFAEQFDDEPAVVAHFHEWQAGVGLPLLRKR- 169 (590)
T ss_pred C---chhhhhHHHHHHHHHHHcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCeEEEEcchhHhHHHHHHHHh-
Confidence 1 112211 1112222 33444555555555444432 457999999999999988777641
Q ss_pred hhcCCCCCceEEEecCCCCCCCC--Chh-----hhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccc
Q 009217 208 VKQGLEGTRILLSCHNLNSLCLE--HPD-----KLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMH 280 (540)
Q Consensus 208 ~~~~~~~~p~V~T~H~~~~~~~~--~~~-----~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~ 280 (540)
..++|+|+|+|.... |+. ... .+.....+... ..... .+...+++.+...||.||+||+..
T Consensus 170 ----~~~VptVfTtHAT~~-GR~l~~g~~~~y~~l~~~~~d~eA----~~~~I---~~r~~iE~~aa~~Ad~fttVS~it 237 (590)
T cd03793 170 ----KVDVSTIFTTHATLL-GRYLCAGNVDFYNNLDYFDVDKEA----GKRGI---YHRYCIERAAAHCAHVFTTVSEIT 237 (590)
T ss_pred ----CCCCCEEEEeccccc-ccccccCCcccchhhhhcchhhhh----hcccc---hHHHHHHHHHHhhCCEEEECChHH
Confidence 378999999997553 221 100 00000000000 00000 123446788899999999999999
Q ss_pred hhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCc-ccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEE
Q 009217 281 SKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDK-FLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVG 359 (540)
Q Consensus 281 ~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~-~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~ 359 (540)
++|+.. ++..++++ |||||+|.+.|.+..+. .+.. .+.+.+ ....+..++.+++++. +.++++
T Consensus 238 ~~E~~~---------Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~-~~k~ki--~~f~~~~~~~~~~~~~--d~tli~ 301 (590)
T cd03793 238 AYEAEH---------LLKRKPDV--VLPNGLNVKKFSALHEFQNLHA-QSKEKI--NEFVRGHFYGHYDFDL--DKTLYF 301 (590)
T ss_pred HHHHHH---------HhCCCCCE--EeCCCcchhhcccchhhhhhhH-Hhhhhh--hHHHHHHHhhhcCCCC--CCeEEE
Confidence 998764 34445555 99999999998765311 0000 000000 0001223455666643 346776
Q ss_pred E-Eecccc-cCCHHHHHHHHHHHHh---c---C---cEEEEEecCCC----------h---hHHHHHHHH----------
Q 009217 360 C-IFSDVS-DVFLENLKAVVRGAKM---R---G---IQFVFTGTNKL----------P---SASRALVSF---------- 405 (540)
Q Consensus 360 ~-vgrl~~-~KG~~~Li~A~~~l~~---~---~---~~lvi~G~g~~----------~---~~~~~l~~l---------- 405 (540)
| +||+.. +||+|.||+|++++.. . + +-|+++=.+-. + .+.+.+..+
T Consensus 302 f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~ 381 (590)
T cd03793 302 FTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFE 381 (590)
T ss_pred EEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6 799998 9999999999998864 1 2 23444321100 0 011111111
Q ss_pred -----------------------------------------------------HHHhC-----CCcEE--EEEec-C---
Q 009217 406 -----------------------------------------------------QEELK-----DGIVI--FVDSY-D--- 421 (540)
Q Consensus 406 -----------------------------------------------------~~~~~-----~~~v~--f~~~~-~--- 421 (540)
.++.+ .++|. |.+.| +
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~ 461 (590)
T cd03793 382 AALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTN 461 (590)
T ss_pred HhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCC
Confidence 01111 14443 44333 1
Q ss_pred ---hHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecC-------CCCH
Q 009217 422 ---DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISS-------TFGN 491 (540)
Q Consensus 422 ---~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~-------~~d~ 491 (540)
.....++|++||+||+||.+||||++++|||+||+|+|+|+. +|+.+.+.+.....+..|+.+. +.+.
T Consensus 462 ~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~--~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v 539 (590)
T cd03793 462 PLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNL--SGFGCFMEEHIEDPESYGIYIVDRRFKSPDESV 539 (590)
T ss_pred CcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccC--cchhhhhHHHhccCCCceEEEecCCccchHHHH
Confidence 123568999999999999999999999999999999999999 8985444321100112244544 2335
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH----hccCChHHHHHHHHHHHHHHHh
Q 009217 492 ISLSQALEEIKNNPLSWKRKIKDAM----LQDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 492 ~~la~ai~~l~~~~~~~~~~~~~a~----~~~fsw~~~a~~~y~~lY~~l~ 538 (540)
++|+++|.++++. +.++++..++. .+.|+|++.+.. |.+.|+...
T Consensus 540 ~~La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~-Y~~A~~~Al 588 (590)
T cd03793 540 QQLTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRY-YRKARQLAL 588 (590)
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHh
Confidence 7899999998854 56666665543 278999999999 799998653
No 59
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=1e-32 Score=287.64 Aligned_cols=383 Identities=14% Similarity=0.027 Sum_probs=240.2
Q ss_pred ccccccccc-cHHHHHhHHHHHHHHc--CCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeE
Q 009217 65 EMDPLVSIG-SLASYVTGLSGALQRK--GHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGV 141 (540)
Q Consensus 65 e~~P~~~~G-G~~~~v~~L~~~L~~~--Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v 141 (540)
-++|....| |.++++.+.+.+|+++ ||+|+|+|..+...... .+......|. ....+++++
T Consensus 5 f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~---~l~~~~~~f~-------------~~~~~~~~~ 68 (419)
T cd03806 5 FFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEE---ILEKVESRFN-------------IELDRPRIV 68 (419)
T ss_pred EECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHH---HHHHHHHhcC-------------eecCCCceE
Confidence 357876667 9999999999999998 89999999765432100 0100000011 112345565
Q ss_pred EEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHc-CCCCCEEEEcC-CchhhHHHHHHHHHhhcCCCCCceEE
Q 009217 142 TFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKS-RKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILL 219 (540)
Q Consensus 142 ~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~-~~~pDIIH~h~-~~~~~~~~~~~~~~~~~~~~~~p~V~ 219 (540)
+++... ..++.+ ..++.--.. ..++ ..+...++.. +.+||||-.|. |..++ ++++. +.++|+|+
T Consensus 69 ~~~~~~--~~~~~~-~~~~r~~~~--~~~~-~~~~~~~~~~~~~~pDv~i~~~g~~~~~--~~~~~------~~~~~~i~ 134 (419)
T cd03806 69 FFLLKY--RKLVEA-STYPRFTLL--GQAL-GSMILGLEALLKLVPDIFIDTMGYPFTY--PLVRL------LGGCPVGA 134 (419)
T ss_pred EEEecc--eeeecc-ccCCceeeH--HHHH-HHHHHHHHHHHhcCCCEEEEcCCcccHH--HHHHH------hcCCeEEE
Confidence 444100 001111 111110011 1111 1122222222 45899988876 43322 22222 25789999
Q ss_pred EecCCCCCCCCChhhhh--hcCCCccccCCCccccCCC---------CCccchhhhHHHhhccceeeccccchhhhhhcc
Q 009217 220 SCHNLNSLCLEHPDKLA--LCGLDPARLHRPDRLQDNT---------KTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 288 (540)
Q Consensus 220 T~H~~~~~~~~~~~~l~--~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~ 288 (540)
.+|=.. .+.+.+. ..+... +.......... ..-...+.+...+.||.++++|+..++.+...
T Consensus 135 y~h~P~----~~~d~l~~~~~~~~~--~~~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~- 207 (419)
T cd03806 135 YVHYPT----ISTDMLQKVRSREAS--YNNSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSL- 207 (419)
T ss_pred EecCCc----chHHHHHHHhhcccc--ccCccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHH-
Confidence 999110 0011111 111100 00000000000 00001245566789999999999887766531
Q ss_pred cCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccC
Q 009217 289 LSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDV 368 (540)
Q Consensus 289 ~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~K 368 (540)
++ ...++.+|+||+|++.|.+... . ...+.+.++|+||+.++|
T Consensus 208 ~~---------~~~~~~vi~~gvd~~~~~~~~~--------------------------~--~~~~~~~il~vgr~~~~K 250 (419)
T cd03806 208 WK---------RNTKPSIVYPPCDVEELLKLPL--------------------------D--EKTRENQILSIAQFRPEK 250 (419)
T ss_pred hC---------cCCCcEEEcCCCCHHHhccccc--------------------------c--cccCCcEEEEEEeecCCC
Confidence 11 1348999999999877654310 0 012347899999999999
Q ss_pred CHHHHHHHHHHHHhc-------CcEEEEEecCCCh---hHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEE
Q 009217 369 FLENLKAVVRGAKMR-------GIQFVFTGTNKLP---SASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILC 437 (540)
Q Consensus 369 G~~~Li~A~~~l~~~-------~~~lvi~G~g~~~---~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~ 437 (540)
|++.+++|+..+.+. +++|+|+|++..+ .+.+++++++++++. ++|+|++..+.+++..+|+.||+++.
T Consensus 251 ~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~ 330 (419)
T cd03806 251 NHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLH 330 (419)
T ss_pred CHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEE
Confidence 999999999988752 5899999976421 356778888888765 79999999998999999999999999
Q ss_pred CCCCCCCchHHHHHHhcCCceEEEecCCCccc-cceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHH-HHHHHHHH
Q 009217 438 HSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR-HFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS-WKRKIKDA 515 (540)
Q Consensus 438 PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~-e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~-~~~~~~~a 515 (540)
||..|+||++++|||+||+|||++++ ||.. |++... .+|.+|++++ |+++++++|.+++++++. ++.+.+++
T Consensus 331 ~s~~E~Fgi~~lEAMa~G~pvIa~~~--ggp~~~iv~~~--~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~ 404 (419)
T cd03806 331 TMWNEHFGIGVVEYMAAGLIPLAHAS--GGPLLDIVVPW--DGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAA 404 (419)
T ss_pred CCccCCcccHHHHHHHcCCcEEEEcC--CCCchheeecc--CCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999998 7754 677521 1356678974 899999999999986554 44454443
Q ss_pred Hh--ccCChHHHHH
Q 009217 516 ML--QDFSWDADCN 527 (540)
Q Consensus 516 ~~--~~fsw~~~a~ 527 (540)
.. ++|||+++.+
T Consensus 405 ~~~~~~fs~~~f~~ 418 (419)
T cd03806 405 RSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHhhCHHHhcc
Confidence 33 7899998753
No 60
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=3.8e-32 Score=275.91 Aligned_cols=351 Identities=20% Similarity=0.240 Sum_probs=245.1
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++++.. .||.+.++..++++|.++||+|+++++...... . . ...
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-~----~-----------------------~~~ 46 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-E----L-----------------------EAL 46 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-c----c-----------------------ccC
Confidence 68999874 589999999999999999999999997543221 0 0 123
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
|+.++.++.. .. ... .. +.........+.+++ .+||+||+|.+.+.+.+.+.+.. ....++
T Consensus 47 ~~~~~~~~~~------~~-~~~----~~-~~~~~~~~~~~~~~~--~~~dvv~~~~~~~~~~~~~~~~~-----~~~~~~ 107 (359)
T cd03808 47 GVKVIPIPLD------RR-GIN----PF-KDLKALLRLYRLLRK--ERPDIVHTHTPKPGILGRLAARL-----AGVPKV 107 (359)
T ss_pred CceEEecccc------cc-ccC----hH-hHHHHHHHHHHHHHh--cCCCEEEEccccchhHHHHHHHH-----cCCCCE
Confidence 5555544310 00 000 00 111112233344443 68999999986665554444321 256788
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
++++|+..+...... . .. . ....+.+..+..+|.++++|+...+.+......
T Consensus 108 i~~~~~~~~~~~~~~-------~-~~------~-------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~------- 159 (359)
T cd03808 108 IYTVHGLGFVFTSGG-------L-KR------R-------LYLLLERLALRFTDKVIFQNEDDRDLALKLGII------- 159 (359)
T ss_pred EEEecCcchhhccch-------h-HH------H-------HHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCC-------
Confidence 888887543211000 0 00 0 012344566778999999999888766542110
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV 377 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~ 377 (540)
.+..++.+++||+|.+.+.+... . . ..+.+.++++||+.+.||++.+++++
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~-------------------~-------~--~~~~~~i~~~G~~~~~k~~~~li~~~ 210 (359)
T cd03808 160 -KKKKTVLIPGSGVDLDRFSPSPE-------------------P-------I--PEDDPVFLFVARLLKDKGIDELLEAA 210 (359)
T ss_pred -CcCceEEecCCCCChhhcCcccc-------------------c-------c--CCCCcEEEEEeccccccCHHHHHHHH
Confidence 01467888999999877655410 0 0 12357899999999999999999999
Q ss_pred HHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 378 RGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 378 ~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
..+.+ .+++|+++|.++........ +...... ++|.|.|. .+++..+|+.||++++||.+|+||++++|||+|
T Consensus 211 ~~l~~~~~~~~l~i~G~~~~~~~~~~~--~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~ 286 (359)
T cd03808 211 RILKAKGPNVRLLLVGDGDEENPAAIL--EIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAM 286 (359)
T ss_pred HHHHhcCCCeEEEEEcCCCcchhhHHH--HHHhcCCcceEEEeec--cccHHHHHHhccEEEecCcccCcchHHHHHHHc
Confidence 99875 57999999977532211111 1333332 68998876 344678999999999999999999999999999
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHH
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 529 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 529 (540)
|+|||+++. ++..|++.+ +.+|+++++.|+++++++|..+++|++.+.++++++++ ++|||+.+++++
T Consensus 287 G~Pvi~s~~--~~~~~~i~~-----~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 357 (359)
T cd03808 287 GRPVIATDV--PGCREAVID-----GVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKL 357 (359)
T ss_pred CCCEEEecC--CCchhhhhc-----CcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 999999998 899999873 45679999999999999999999999999999988865 899999999883
No 61
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=9.4e-33 Score=287.13 Aligned_cols=381 Identities=11% Similarity=0.053 Sum_probs=233.9
Q ss_pred EEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcC
Q 009217 59 IIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSG 138 (540)
Q Consensus 59 Il~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 138 (540)
||++|+. .|+.-.+|-...+.++.++|++. |+|++++......+......++.+. +.
T Consensus 1 iL~~~~~-~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~---------------------~~ 57 (397)
T TIGR03087 1 ILYLVHR-IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLC---------------------EE 57 (397)
T ss_pred CeeecCC-CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHh---------------------he
Confidence 6888875 44433445589999999999876 9999999754322211111121110 11
Q ss_pred eeEEEEccCC-----CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCC
Q 009217 139 IGVTFIQPLH-----YSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 139 v~v~~i~~~~-----~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~ 213 (540)
+.+..+.+.. ...++.. .++... ..+..-+.+.+.+.++ ..++|+||+|....+ .++.. ...
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~~~-~p~~~~--~~~~~~~~~~l~~~~~--~~~~D~v~~~~~~~~---~~~~~-----~~~ 124 (397)
T TIGR03087 58 VCVVPLDPRVARLRSLLGLLTG-EPLSLP--YYRSRRLARWVNALLA--AEPVDAIVVFSSAMA---QYVTP-----HVR 124 (397)
T ss_pred eEEeecCcHHHHHHHHhhhcCC-CCCcch--hhCCHHHHHHHHHHHh--hCCCCEEEEeccccc---eeccc-----ccc
Confidence 1111111000 0001110 111100 0000111222333333 368999999863222 22211 125
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCc
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 293 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl 293 (540)
++|+|++.||..... + .......+.+...+. +.+. .....+.+..++.+|.|+++|+..++.+.... +
T Consensus 125 ~~p~i~~~~d~~~~~-~-~~~~~~~~~~~~~~~---~~~~---~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~-~--- 192 (397)
T TIGR03087 125 GVPRIVDFVDVDSDK-W-LQYARTKRWPLRWIY---RREG---RLLLAYERAIAARFDAATFVSRAEAELFRRLA-P--- 192 (397)
T ss_pred CCCeEeehhhHHHHH-H-HHHHhccCcchhHHH---HHHH---HHHHHHHHHHHhhCCeEEEcCHHHHHHHHHhC-C---
Confidence 789999999864210 0 000000001000000 0000 00123566778899999999998887665311 1
Q ss_pred hHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHH
Q 009217 294 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENL 373 (540)
Q Consensus 294 ~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~L 373 (540)
....++.+||||+|.+.|.|.... . . ..+ .+.+.++|+||+.+.||++.+
T Consensus 193 -----~~~~~v~vipngvd~~~f~~~~~~-----------------~----~--~~~--~~~~~ilf~G~l~~~k~~~~l 242 (397)
T TIGR03087 193 -----EAAGRITAFPNGVDADFFSPDRDY-----------------P----N--PYP--PGKRVLVFTGAMDYWPNIDAV 242 (397)
T ss_pred -----CCCCCeEEeecccchhhcCCCccc-----------------c----C--CCC--CCCcEEEEEEecCCccCHHHH
Confidence 135789999999999988764210 0 0 011 134689999999999999998
Q ss_pred H----HHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC-CCCCch
Q 009217 374 K----AVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQ 446 (540)
Q Consensus 374 i----~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fgl 446 (540)
+ ++++.+.+ ++++|+|+|+|+. .+++++.. .++|+|+|..++ +..+|+.||++|+||. .|++|+
T Consensus 243 ~~~~~~~~~~l~~~~p~~~l~ivG~g~~----~~~~~l~~---~~~V~~~G~v~~--~~~~~~~adv~v~Ps~~~eG~~~ 313 (397)
T TIGR03087 243 VWFAERVFPAVRARRPAAEFYIVGAKPS----PAVRALAA---LPGVTVTGSVAD--VRPYLAHAAVAVAPLRIARGIQN 313 (397)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEECCCCh----HHHHHhcc---CCCeEEeeecCC--HHHHHHhCCEEEecccccCCccc
Confidence 8 44555543 5899999998753 23444332 268999987763 5689999999999997 599999
Q ss_pred HHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChH
Q 009217 447 VPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 523 (540)
Q Consensus 447 v~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~ 523 (540)
+++|||+||+|||+|+. |+ ..+... +.+|++++ .|+++++++|.++++|++.+++|+++|++ ++|||+
T Consensus 314 ~~lEAma~G~PVV~t~~--~~-~~i~~~-----~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~ 384 (397)
T TIGR03087 314 KVLEAMAMAKPVVASPE--AA-EGIDAL-----PGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYHWP 384 (397)
T ss_pred HHHHHHHcCCCEEecCc--cc-cccccc-----CCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999986 33 222221 12357886 89999999999999999999999998875 789999
Q ss_pred HHHHHHHHHHHHH
Q 009217 524 ADCNDIHISAYTA 536 (540)
Q Consensus 524 ~~a~~~y~~lY~~ 536 (540)
.++++ ++++|+.
T Consensus 385 ~~~~~-~~~~l~~ 396 (397)
T TIGR03087 385 RNLAR-LDALLEQ 396 (397)
T ss_pred HHHHH-HHHHhcC
Confidence 99999 4988853
No 62
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=9.4e-32 Score=283.84 Aligned_cols=279 Identities=9% Similarity=0.034 Sum_probs=200.0
Q ss_pred CCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchh
Q 009217 183 RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNI 262 (540)
Q Consensus 183 ~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 262 (540)
..++||+|++...... .+++.. ..++|+++++|+-.+...... .. ...|. .....
T Consensus 209 ~~~~di~i~dr~~~~~-~~~~~~------~~~~~~v~~lH~~h~~~~~~~---------~~-------~~~~~--~~y~~ 263 (500)
T TIGR02918 209 LTKKDIIILDRSTGIG-QAVLEN------KGPAKLGVVVHAEHFSESATN---------ET-------YILWN--NYYEY 263 (500)
T ss_pred CCCCCEEEEcCCcccc-hHHHhc------CCCceEEEEEChhhhcCccCc---------ch-------hHHHH--HHHHH
Confidence 3689999997532222 122222 257899999997432111000 00 00000 00011
Q ss_pred hhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHH
Q 009217 263 LKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVT 342 (540)
Q Consensus 263 ~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~ 342 (540)
....+..+|.++++|+..++.+... ++ .......++.+||||++...+.|..
T Consensus 264 ~~~~~~~~D~iI~~S~~~~~~l~~~-~~-----~~~~~~~ki~viP~g~~~~~~~~~~---------------------- 315 (500)
T TIGR02918 264 QFSNADYIDFFITATDIQNQILKNQ-FK-----KYYNIEPRIYTIPVGSLDELQYPEQ---------------------- 315 (500)
T ss_pred HHhchhhCCEEEECCHHHHHHHHHH-hh-----hhcCCCCcEEEEcCCCcccccCccc----------------------
Confidence 1123566899999999877766532 11 0001357899999998754332210
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEe
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDS 419 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~ 419 (540)
..+...++++||+.++||++.|++|+..+.+ ++++|+|+|+|+ ..+.+++++++++. ++|.|+|.
T Consensus 316 ---------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~---~~~~l~~~i~~~~l~~~V~f~G~ 383 (500)
T TIGR02918 316 ---------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGG---EKQKLQKIINENQAQDYIHLKGH 383 (500)
T ss_pred ---------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECch---hHHHHHHHHHHcCCCCeEEEcCC
Confidence 0123579999999999999999999999875 589999999875 35678888888764 78998874
Q ss_pred cChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCC----C----H
Q 009217 420 YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTF----G----N 491 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~----d----~ 491 (540)
. .+..+|+.||++|+||.+|+||++++||||||+|||+++++ ||.+|+|. +|.+|+++++. | +
T Consensus 384 ~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~-~G~~eiI~-----~g~nG~lv~~~~~~~d~~~~~ 454 (500)
T TIGR02918 384 R---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVN-YGNPTFIE-----DNKNGYLIPIDEEEDDEDQII 454 (500)
T ss_pred C---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCC-CCCHHHcc-----CCCCEEEEeCCccccchhHHH
Confidence 3 35678999999999999999999999999999999999982 38899998 47778999842 3 7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHH
Q 009217 492 ISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 492 ~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l 537 (540)
++|+++|..+++ ++.+.+|+++|.+ ++|||+.++++ +.++++++
T Consensus 455 ~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs~~~v~~~-w~~ll~~~ 500 (500)
T TIGR02918 455 TALAEKIVEYFN-SNDIDAFHEYSYQIAEGFLTANIIEK-WKKLVREV 500 (500)
T ss_pred HHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHhhC
Confidence 899999999995 5678899998876 89999999999 59998764
No 63
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=4.1e-31 Score=267.34 Aligned_cols=337 Identities=18% Similarity=0.164 Sum_probs=233.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++++..+. .||.+.++..|+++|.+.||+|+++++............. ..
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~------------------------~~ 52 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSN------------------------VK 52 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccc------------------------hh
Confidence 6899988653 5999999999999999999999999976543221100000 00
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCC-chhhHHHHHHHHHhhcCCCCCc
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~-~~~~~~~~~~~~~~~~~~~~~p 216 (540)
........ . . .. . ...+.....+++++ .+||+||+|.. .+.++..+. . ..++|
T Consensus 53 ~~~~~~~~------~--~--~~--~-----~~~~~~~~~~~~~~--~~~dii~~~~~~~~~~~~~~~-~------~~~~~ 106 (353)
T cd03811 53 LIPVRVLK------L--K--SL--R-----DLLAILRLRRLLRK--EKPDVVISHLTTTPNVLALLA-A------RLGTK 106 (353)
T ss_pred hhceeeee------c--c--cc--c-----chhHHHHHHHHHHh--cCCCEEEEcCccchhHHHHHH-h------hcCCc
Confidence 00000000 0 0 00 0 01122334444443 58999999986 443332222 1 12789
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
+++++|+......... . ......+..+..+|.++++|+..++.+... ++
T Consensus 107 ~i~~~~~~~~~~~~~~------------------~------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~------ 155 (353)
T cd03811 107 LIVWEHNSLSLELKRK------------------L------RLLLLIRKLYRRADKIVAVSEGVKEDLLKL-LG------ 155 (353)
T ss_pred eEEEEcCcchhhhccc------------------h------hHHHHHHhhccccceEEEeccchhhhHHHh-hc------
Confidence 9999998543211000 0 000234556788999999999988776542 11
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAV 376 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A 376 (540)
.+..++.+||||+|.+.+.+.... . . .++.. .+.+.++++||+.+.||++.+++|
T Consensus 156 --~~~~~~~vi~~~~~~~~~~~~~~~------------------~-~--~~~~~--~~~~~i~~~g~~~~~k~~~~~i~~ 210 (353)
T cd03811 156 --IPPDKIEVIYNPIDIEEIRALAEE------------------P-L--ELGIP--PDGPVILAVGRLSPQKGFDTLIRA 210 (353)
T ss_pred --CCccccEEecCCcChhhcCcccch------------------h-h--hcCCC--CCceEEEEEecchhhcChHHHHHH
Confidence 135789999999998877654210 0 0 12222 345889999999999999999999
Q ss_pred HHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 377 VRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 377 ~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
+..+.+ .+++|+++|.++ ..+.++++.+.++. ++|.+.+..+ + ...+|+.||++++||.+|++|++++|||+
T Consensus 211 ~~~l~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~v~~~g~~~-~-~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~ 285 (353)
T cd03811 211 FALLRKEGPDARLVILGDGP---LREELEALAKELGLADRVHFLGFQS-N-PYPYLKAADLFVLSSRYEGFPNVLLEAMA 285 (353)
T ss_pred HHHhhhcCCCceEEEEcCCc---cHHHHHHHHHhcCCCccEEEecccC-C-HHHHHHhCCEEEeCcccCCCCcHHHHHHH
Confidence 999986 389999999765 34556666776654 7888887644 3 56899999999999999999999999999
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHH---HHHHHHHhcCHHHHHHHHHHHH
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISL---SQALEEIKNNPLSWKRKIKDAM 516 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~l---a~ai~~l~~~~~~~~~~~~~a~ 516 (540)
+|+|||+++. ||..|++.+ +.+|+++++.+++++ .+++..+.++++.+.+++.++.
T Consensus 286 ~G~PvI~~~~--~~~~e~i~~-----~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 344 (353)
T cd03811 286 LGTPVVATDC--PGPREILED-----GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAAR 344 (353)
T ss_pred hCCCEEEcCC--CChHHHhcC-----CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 9999999999 899999873 556799999999888 6778888889998888887554
No 64
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=5.6e-31 Score=274.11 Aligned_cols=206 Identities=15% Similarity=0.098 Sum_probs=155.2
Q ss_pred ccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCC
Q 009217 270 SNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGL 349 (540)
Q Consensus 270 ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl 349 (540)
||.|+++|.... ++ +...+. ..||||++.|.|.. +...++++|+
T Consensus 499 cD~VIaPS~atq-~L---------------~~~vI~-nVnGVDte~F~P~~-------------------r~~~~r~lgi 542 (794)
T PLN02501 499 CHKVLRLSAATQ-DL---------------PKSVIC-NVHGVNPKFLKIGE-------------------KVAEERELGQ 542 (794)
T ss_pred CCEEEcCCHHHH-Hh---------------ccccee-ecccccccccCCcc-------------------hhHHHHhcCC
Confidence 899999996544 22 112222 23799999998862 2222345666
Q ss_pred CCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 009217 350 SKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHL 427 (540)
Q Consensus 350 ~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~ 427 (540)
+..+ +.++|+||+.++||++.|++|+..+.+ .+++|+|+|+|+. .+++++++.+++. +|.|+|+.+.. ..
T Consensus 543 ~~~~--kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~---reeLe~la~eLgL-~V~FLG~~dd~--~~ 614 (794)
T PLN02501 543 QAFS--KGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGED---AHEVQRAAKRLDL-NLNFLKGRDHA--DD 614 (794)
T ss_pred cccc--CceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCcc---HHHHHHHHHHcCC-EEEecCCCCCH--HH
Confidence 4322 347899999999999999999998865 4799999999863 5678888887753 58888765433 36
Q ss_pred HHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHH
Q 009217 428 IFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS 507 (540)
Q Consensus 428 ~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~ 507 (540)
+|+.+|+||+||.+|+||++++||||||+|||+++. ||. +.+.+ |.+|++. .|+++++++|.++++|+..
T Consensus 615 lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~--pG~-e~V~~-----g~nGll~--~D~EafAeAI~~LLsd~~~ 684 (794)
T PLN02501 615 SLHGYKVFINPSISDVLCTATAEALAMGKFVVCADH--PSN-EFFRS-----FPNCLTY--KTSEDFVAKVKEALANEPQ 684 (794)
T ss_pred HHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecC--CCC-ceEee-----cCCeEec--CCHHHHHHHHHHHHhCchh
Confidence 899999999999999999999999999999999998 774 44542 3445654 7889999999999998875
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHH
Q 009217 508 WKRKIKDAMLQDFSWDADCNDIHISA 533 (540)
Q Consensus 508 ~~~~~~~a~~~~fsw~~~a~~~y~~l 533 (540)
+..+.. ...|||+.+++++ ++.
T Consensus 685 rl~~~a---~~~~SWeAaadrL-le~ 706 (794)
T PLN02501 685 PLTPEQ---RYNLSWEAATQRF-MEY 706 (794)
T ss_pred hhHHHH---HhhCCHHHHHHHH-HHh
Confidence 543332 2589999999995 643
No 65
>PLN02275 transferase, transferring glycosyl groups
Probab=99.98 E-value=2.3e-30 Score=266.33 Aligned_cols=327 Identities=13% Similarity=0.017 Sum_probs=212.6
Q ss_pred ccHHHHHhHHHHHHHHcCC-eEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCCCCC
Q 009217 73 GSLASYVTGLSGALQRKGH-LVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSS 151 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh-~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~ 151 (540)
+|.+..+..++..|+++|| +|+|++...+....+ .. ..+|+++++++. +.
T Consensus 15 ~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~----~~----------------------~~~~v~v~r~~~---~~ 65 (371)
T PLN02275 15 FGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPA----LL----------------------NHPSIHIHLMVQ---PR 65 (371)
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHH----Hh----------------------cCCcEEEEECCC---cc
Confidence 6778999999999999886 799998643321111 00 134678887742 00
Q ss_pred CCCCCCCCCCCC---hhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCch---hhHHHHHHHHHhhcCCCCCceEEEecCCC
Q 009217 152 FFNRESVYGYSD---DFERFTYFSRASLDYIVKSRKQPDVLHIHNWET---AIVGPLFWDIFVKQGLEGTRILLSCHNLN 225 (540)
Q Consensus 152 ~~~~~~~y~~~~---~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~---~~~~~~~~~~~~~~~~~~~p~V~T~H~~~ 225 (540)
.... .-.... .......+...++..+.....+|||||+|+... .+++.++.. +.++|+|+|+|+..
T Consensus 66 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~------~~~~p~v~~~h~~~ 137 (371)
T PLN02275 66 LLQR--LPRVLYALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACW------LRRAKFVIDWHNFG 137 (371)
T ss_pred cccc--cccchHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHH------HhCCCEEEEcCCcc
Confidence 1100 000000 000011111222222222247999999997332 222223322 26789999999863
Q ss_pred CCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceE
Q 009217 226 SLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLL 305 (540)
Q Consensus 226 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~ 305 (540)
+. ....+...... ... -...+.+...+.+|.|+++|+.+++.+... .+ -++.
T Consensus 138 ~~-------~~~~~~~~~~~-----~~~----~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~-~g-----------~~i~ 189 (371)
T PLN02275 138 YT-------LLALSLGRSHP-----LVR----LYRWYERHYGKMADGHLCVTKAMQHELDQN-WG-----------IRAT 189 (371)
T ss_pred HH-------HHhcccCCCCH-----HHH----HHHHHHHHHHhhCCEEEECCHHHHHHHHHh-cC-----------CCeE
Confidence 11 00011100000 000 012345666788999999999998876531 12 1289
Q ss_pred EeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHH----
Q 009217 306 VAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAK---- 381 (540)
Q Consensus 306 vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~---- 381 (540)
+||||. .+.|.|.... . .+.. +...+++++||+.++||++.|++|+..+.
T Consensus 190 vi~n~~-~~~f~~~~~~----------------------~--~~~~-~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~ 243 (371)
T PLN02275 190 VLYDQP-PEFFRPASLE----------------------I--RLRP-NRPALVVSSTSWTPDEDFGILLEAAVMYDRRVA 243 (371)
T ss_pred EECCCC-HHHcCcCCch----------------------h--cccC-CCcEEEEEeCceeccCCHHHHHHHHHHHHhhhh
Confidence 999995 4667654210 0 0111 12357789999999999999999998773
Q ss_pred ---------------hcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHhcCCEEEECC--C-CC
Q 009217 382 ---------------MRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS-YDDALLHLIFSGSDIILCHS--F-HD 442 (540)
Q Consensus 382 ---------------~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~-~~~~~~~~~~~~aDi~v~PS--~-~E 442 (540)
.++++|+|+|+|+. .+++++++++++.+++.|+++ .+.++++.+|++||++|+|+ . .|
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~l~ivG~G~~---~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e 320 (371)
T PLN02275 244 ARLNESDSASGKQSLYPRLLFIITGKGPQ---KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGL 320 (371)
T ss_pred hccccccccccccccCCCeEEEEEeCCCC---HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccc
Confidence 14799999998863 578888888877667888875 67888899999999999874 2 49
Q ss_pred CCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 443 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 443 ~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+||.+++||||||+|||+++. ||.+|+|.+ |.+|++++ ++++|+++|.+++
T Consensus 321 ~~p~~llEAmA~G~PVVa~~~--gg~~eiv~~-----g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 321 DLPMKVVDMFGCGLPVCAVSY--SCIGELVKD-----GKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred cccHHHHHHHHCCCCEEEecC--CChHHHccC-----CCCeEEEC--CHHHHHHHHHHhC
Confidence 999999999999999999998 999999984 56679986 6899999998763
No 66
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.98 E-value=8.6e-31 Score=272.61 Aligned_cols=220 Identities=12% Similarity=0.075 Sum_probs=180.2
Q ss_pred hhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHH
Q 009217 261 NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCK 340 (540)
Q Consensus 261 ~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~ 340 (540)
.+.+..+..+|.|+++|+..++.+... ++ ...+++.+++||+|...+.+..
T Consensus 175 ~~~~~~~~~~d~ii~~S~~~~~~l~~~-~~--------~~~~ki~vi~~gv~~~~~~~~~-------------------- 225 (407)
T cd04946 175 PLRRYLLSSLDAVFPCSEQGRNYLQKR-YP--------AYKEKIKVSYLGVSDPGIISKP-------------------- 225 (407)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHHH-CC--------CccccEEEEECCcccccccCCC--------------------
Confidence 344556788999999999988876542 22 2467899999999976543320
Q ss_pred HHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc----CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEE
Q 009217 341 VTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR----GIQFVFTGTNKLPSASRALVSFQEELKD-GIVI 415 (540)
Q Consensus 341 ~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~----~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~ 415 (540)
..++.+.++++||+.+.||++.+++|+..+.+. +++++++|+|+ ..+.++++++..+. ++|.
T Consensus 226 ----------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~---~~~~l~~~~~~~~~~~~V~ 292 (407)
T cd04946 226 ----------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP---LEDTLKELAESKPENISVN 292 (407)
T ss_pred ----------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch---HHHHHHHHHHhcCCCceEE
Confidence 012347899999999999999999999998763 56778899664 45677777766543 6899
Q ss_pred EEEecChHHHHHHHhc--CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCC-CHH
Q 009217 416 FVDSYDDALLHLIFSG--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTF-GNI 492 (540)
Q Consensus 416 f~~~~~~~~~~~~~~~--aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~-d~~ 492 (540)
|+|.++++++..+|+. +|+|++||.+|+||++++|||+||+|||+|++ ||++|++.+ |.+|+++++. |++
T Consensus 293 f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v--gg~~e~i~~-----~~~G~l~~~~~~~~ 365 (407)
T cd04946 293 FTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV--GGTPEIVDN-----GGNGLLLSKDPTPN 365 (407)
T ss_pred EecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC--CCcHHHhcC-----CCcEEEeCCCCCHH
Confidence 9998998888888865 78999999999999999999999999999998 999999973 5567888764 789
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHH
Q 009217 493 SLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDI 529 (540)
Q Consensus 493 ~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~ 529 (540)
+++++|..+++||+.+++|+++|++ ++|||+...+++
T Consensus 366 ~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 366 ELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHh
Confidence 9999999999999999999999976 899999988873
No 67
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=1.4e-30 Score=266.41 Aligned_cols=204 Identities=14% Similarity=0.040 Sum_probs=168.1
Q ss_pred hhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHH
Q 009217 262 ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 341 (540)
Q Consensus 262 ~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~ 341 (540)
+.+..++++|.++++|+..++.+.. .+ ..+..+|+||+|.+.|.+..
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~~~~-~~-----------~~~~~vi~~~~d~~~~~~~~--------------------- 192 (351)
T cd03804 146 WDRRSAARVDYFIANSRFVARRIKK-YY-----------GRDATVIYPPVDTDRFTPAE--------------------- 192 (351)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHH-Hh-----------CCCcEEECCCCCHhhcCcCC---------------------
Confidence 4455678999999999998887653 11 34578999999988776531
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecC
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD 421 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~ 421 (540)
...+.++++||+.+.||++.+++|+..+. ++|+|+|+|+. .+.+++ .. .++|+|+|..+
T Consensus 193 -----------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~~---~~~l~~---~~-~~~V~~~g~~~ 251 (351)
T cd03804 193 -----------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGPE---LDRLRA---KA-GPNVTFLGRVS 251 (351)
T ss_pred -----------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECChh---HHHHHh---hc-CCCEEEecCCC
Confidence 11246889999999999999999998773 89999997752 344443 23 37999999999
Q ss_pred hHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 422 DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 422 ~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
++++..+|++||++++||. |+||++++|||+||+|||+++. ||.+|++.+ |.+|+++++.|+++|+++|..+
T Consensus 252 ~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~--~~~~e~i~~-----~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 252 DEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGK--GGALETVID-----GVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCC--CCCcceeeC-----CCCEEEeCCCCHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999998 999999873 5567999999999999999999
Q ss_pred hcCH-HHHHHHHHHHHhccCChHHHHHHH
Q 009217 502 KNNP-LSWKRKIKDAMLQDFSWDADCNDI 529 (540)
Q Consensus 502 ~~~~-~~~~~~~~~a~~~~fsw~~~a~~~ 529 (540)
++|+ ..++++++++ ++|+|++..+++
T Consensus 324 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 350 (351)
T cd03804 324 EKNEDFDPQAIRAHA--ERFSESRFREKI 350 (351)
T ss_pred HhCcccCHHHHHHHH--HhcCHHHHHHHh
Confidence 9998 5566666655 579999998873
No 68
>PHA01630 putative group 1 glycosyl transferase
Probab=99.97 E-value=2.7e-30 Score=259.65 Aligned_cols=215 Identities=12% Similarity=0.100 Sum_probs=158.6
Q ss_pred HhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHH
Q 009217 267 VVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQ 346 (540)
Q Consensus 267 ~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~ 346 (540)
.+.+|.|+++|+..++.+...... .++++.+||||+|.+.|.|...
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~~g~~---------~~~~i~vIpNGVd~~~f~~~~~------------------------- 137 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYTSGLK---------IPQPIYVIPHNLNPRMFEYKPK------------------------- 137 (331)
T ss_pred hccCCEEEECCHHHHHHHHHcCCC---------CCCCEEEECCCCCHHHcCCCcc-------------------------
Confidence 567999999999988876542111 1468999999999988866410
Q ss_pred hCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHH
Q 009217 347 LGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDAL 424 (540)
Q Consensus 347 ~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~ 424 (540)
......++++.|++.++||++.|++|++.+.+ .+++|+++|++.. ...+. .+ .. +.+..+.++
T Consensus 138 ----~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~---~~~l~----~~--~~--~~~~v~~~~ 202 (331)
T PHA01630 138 ----EKPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML---DPRLF----GL--NG--VKTPLPDDD 202 (331)
T ss_pred ----ccCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc---chhhc----cc--cc--eeccCCHHH
Confidence 00123567788899999999999999999875 4799999995532 11111 11 11 234567788
Q ss_pred HHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccc-----------------cceeecC
Q 009217 425 LHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTR-----------------FSRFISS 487 (540)
Q Consensus 425 ~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g-----------------~~G~l~~ 487 (540)
+..+|++||+||+||.+|+||++++||||||+|||+|+. ||++|++.++. +| ..|++++
T Consensus 203 l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~--gg~~E~i~~~~--ng~lv~~~~~~~~~~~~~~~~G~~v~ 278 (331)
T PHA01630 203 IYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEK--GAWSEWVLSNL--DVYWIKSGRKPKLWYTNPIHVGYFLD 278 (331)
T ss_pred HHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCC--CCchhhccCCC--ceEEeeecccccccccCCcccccccC
Confidence 899999999999999999999999999999999999998 99999987432 11 1134444
Q ss_pred CCCHHHHHHHHHHHhcC---HHHHHHHHHHHH--hccCChHHHHHHHHHHHHHH
Q 009217 488 TFGNISLSQALEEIKNN---PLSWKRKIKDAM--LQDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 488 ~~d~~~la~ai~~l~~~---~~~~~~~~~~a~--~~~fsw~~~a~~~y~~lY~~ 536 (540)
+ |.+++++++.+++.| ++.++.+..++. .++|||+.++++ |+++|++
T Consensus 279 ~-~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k-~~~l~~~ 330 (331)
T PHA01630 279 P-DIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKM-WEKILEK 330 (331)
T ss_pred C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhc
Confidence 4 566788888887776 344444554443 389999999999 5999975
No 69
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=8.4e-29 Score=245.96 Aligned_cols=223 Identities=12% Similarity=0.126 Sum_probs=161.3
Q ss_pred HHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHH
Q 009217 265 GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQ 344 (540)
Q Consensus 265 ~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr 344 (540)
..+.+.+.+|++|+..++++... | + +.. .+|+||+|++.|.|..+ ....++
T Consensus 88 ~~m~~~~~vIavS~~t~~~L~~~--G--~-------~~~-i~I~~GVD~~~f~p~~~-----------------~~~~~r 138 (335)
T PHA01633 88 KYLLQDVKFIPNSKFSAENLQEV--G--L-------QVD-LPVFHGINFKIVENAEK-----------------LVPQLK 138 (335)
T ss_pred HHHhcCCEEEeCCHHHHHHHHHh--C--C-------CCc-eeeeCCCChhhcCccch-----------------hhHHHH
Confidence 34555678899999988877642 2 1 123 35889999998887521 123466
Q ss_pred HHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc------CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEE
Q 009217 345 QQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVD 418 (540)
Q Consensus 345 ~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~------~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~ 418 (540)
++++.... +.++++++||+.++||++.|++|++.+.+. +++++++|.+ .++++ .++ ++|+|++
T Consensus 139 ~~~~~~~~-~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~-------~~~~l--~l~-~~V~f~g 207 (335)
T PHA01633 139 QKLDKDFP-DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK-------QFTQL--EVP-ANVHFVA 207 (335)
T ss_pred HHhCcCCC-CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH-------HHHHc--CCC-CcEEEEe
Confidence 66665322 357899999999999999999999998752 3578877721 12211 122 7899986
Q ss_pred ec---ChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--------C-----Cccccc
Q 009217 419 SY---DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--------H-----ESTRFS 482 (540)
Q Consensus 419 ~~---~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--------~-----~~~g~~ 482 (540)
.+ +.+++..+|++||+||+||.+|+||++++|||+||+|||+++. ||++|++..+ . ++....
T Consensus 208 ~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~--~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~ 285 (335)
T PHA01633 208 EFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLM--PPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ 285 (335)
T ss_pred cCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccC--CCceeecCCccceeeCCCCHHHhcCcccCc
Confidence 33 5677889999999999999999999999999999999999998 8998875421 0 111223
Q ss_pred eeecCCCCHHHHHHHHHHHhc--CHHHHHHHHHHHHhccCChHHHHHHHHH
Q 009217 483 RFISSTFGNISLSQALEEIKN--NPLSWKRKIKDAMLQDFSWDADCNDIHI 531 (540)
Q Consensus 483 G~l~~~~d~~~la~ai~~l~~--~~~~~~~~~~~a~~~~fsw~~~a~~~y~ 531 (540)
|+++++.|+++|+++|..++. +++.+. +......+.|+|++++++ |+
T Consensus 286 g~~~~~~d~~~la~ai~~~~~~~~~~~~~-~~~~~~a~~f~~~~~~~~-~~ 334 (335)
T PHA01633 286 KWKIHKFQIEDMANAIILAFELQDREERS-MKLKELAKKYDIRNLYTR-FL 334 (335)
T ss_pred eeeecCCCHHHHHHHHHHHHhccChhhhh-HHHHHHHHhcCHHHHHHH-hh
Confidence 789999999999999998844 444442 111223389999999998 45
No 70
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.96 E-value=1.1e-28 Score=254.44 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=172.2
Q ss_pred HHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHH
Q 009217 266 GVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ 345 (540)
Q Consensus 266 ~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~ 345 (540)
.+..+|.++++|+..++.+... ++ ...++.+||||++.+.+.+..
T Consensus 154 ~~~~~d~ii~~s~~~~~~l~~~-~~---------~~~~v~~ip~g~~~~~~~~~~------------------------- 198 (372)
T cd04949 154 NLDKVDGVIVATEQQKQDLQKQ-FG---------NYNPIYTIPVGSIDPLKLPAQ------------------------- 198 (372)
T ss_pred ChhhCCEEEEccHHHHHHHHHH-hC---------CCCceEEEcccccChhhcccc-------------------------
Confidence 3567899999999887766542 21 234589999999987655420
Q ss_pred HhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecCh
Q 009217 346 QLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDD 422 (540)
Q Consensus 346 ~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~ 422 (540)
........++++||+.++||++.+++|+..+.+ ++++|+|+|.|+. ...++.+.+.++. ++|.|.| +.
T Consensus 199 ----~~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~~~v~~~g-~~- 269 (372)
T cd04949 199 ----FKQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE---EEKLKELIEELGLEDYVFLKG-YT- 269 (372)
T ss_pred ----hhhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch---HHHHHHHHHHcCCcceEEEcC-CC-
Confidence 001123678999999999999999999999875 5899999998753 4456666666654 6888876 44
Q ss_pred HHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCC-ccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 423 ALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDI-EFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 423 ~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~g-g~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
+++..+|+.||++|+||.+|+||++++|||+||+|+|+++. | |..|++. +|.+|+++++.|+++|+++|..+
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~--~~g~~~~v~-----~~~~G~lv~~~d~~~la~~i~~l 342 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDV--NYGPSEIIE-----DGENGYLVPKGDIEALAEAIIEL 342 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecC--CCCcHHHcc-----cCCCceEeCCCcHHHHHHHHHHH
Confidence 34668999999999999999999999999999999999998 5 7889987 46678999999999999999999
Q ss_pred hcCHHHHHHHHHHHHh--ccCChHHHHHH
Q 009217 502 KNNPLSWKRKIKDAML--QDFSWDADCND 528 (540)
Q Consensus 502 ~~~~~~~~~~~~~a~~--~~fsw~~~a~~ 528 (540)
++|++.++++++++++ ++|||++++++
T Consensus 343 l~~~~~~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 343 LNDPKLLQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred HcCHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999998876 89999999876
No 71
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.96 E-value=1.6e-26 Score=236.91 Aligned_cols=340 Identities=12% Similarity=-0.000 Sum_probs=219.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++++.+ .||......+|+++|.++||+|++++..... ... .+ ..
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~-~~~---~~-----------------------~~ 48 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGM-EAR---LV-----------------------PK 48 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCch-hhh---cc-----------------------cc
Confidence 899988763 5888888999999999999999999874321 000 00 01
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
.|++++.++.. .. ..............+......+.+++++ .+|||||+|.+.+++.+.+++. ..++|
T Consensus 49 ~g~~~~~~~~~---~~-~~~~~~~~l~~~~~~~~~~~~~~~~ik~--~~pDvv~~~~~~~~~~~~~~~~------~~~~p 116 (357)
T PRK00726 49 AGIEFHFIPSG---GL-RRKGSLANLKAPFKLLKGVLQARKILKR--FKPDVVVGFGGYVSGPGGLAAR------LLGIP 116 (357)
T ss_pred CCCcEEEEecc---Cc-CCCChHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCcchhHHHHHHH------HcCCC
Confidence 36677766421 00 0000000000011111112233333433 5899999999776665444433 36889
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
+|++.|+... . ...+...+.+|.++++++....+
T Consensus 117 ~v~~~~~~~~----------------------~-----------~~~r~~~~~~d~ii~~~~~~~~~------------- 150 (357)
T PRK00726 117 LVIHEQNAVP----------------------G-----------LANKLLARFAKKVATAFPGAFPE------------- 150 (357)
T ss_pred EEEEcCCCCc----------------------c-----------HHHHHHHHHhchheECchhhhhc-------------
Confidence 9988774210 0 01122455789998877632111
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH-H
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK-A 375 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li-~ 375 (540)
.+..++++|+||+|.+.+.+.. .+++++++. +.++++++|+..+.|+...++ +
T Consensus 151 --~~~~~i~vi~n~v~~~~~~~~~----------------------~~~~~~~~~--~~~~i~~~gg~~~~~~~~~~l~~ 204 (357)
T PRK00726 151 --FFKPKAVVTGNPVREEILALAA----------------------PPARLAGRE--GKPTLLVVGGSQGARVLNEAVPE 204 (357)
T ss_pred --cCCCCEEEECCCCChHhhcccc----------------------hhhhccCCC--CCeEEEEECCcHhHHHHHHHHHH
Confidence 1468999999999987654421 112344443 346788899988888865555 8
Q ss_pred HHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcC
Q 009217 376 VVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG 455 (540)
Q Consensus 376 A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G 455 (540)
|+.++.+....++++|.|+ .+ .+.+..+ ++. +|.|.+.. +....+|++||+++++|- +.+++|||+||
T Consensus 205 a~~~~~~~~~~~~~~G~g~---~~-~~~~~~~-~~~-~v~~~g~~--~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g 272 (357)
T PRK00726 205 ALALLPEALQVIHQTGKGD---LE-EVRAAYA-AGI-NAEVVPFI--DDMAAAYAAADLVICRAG----ASTVAELAAAG 272 (357)
T ss_pred HHHHhhhCcEEEEEcCCCc---HH-HHHHHhh-cCC-cEEEeehH--hhHHHHHHhCCEEEECCC----HHHHHHHHHhC
Confidence 8887764334567788764 23 3333334 543 48777555 456789999999999873 58899999999
Q ss_pred CceEEEecCCCccc--------cceeccCCccccceeecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChH
Q 009217 456 AAPIAVTSSDIEFR--------HFAEFDHESTRFSRFISSTFG--NISLSQALEEIKNNPLSWKRKIKDAML--QDFSWD 523 (540)
Q Consensus 456 ~pvI~~~~~~gg~~--------e~v~~~~~~~g~~G~l~~~~d--~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~ 523 (540)
+|+|++.. ++.. +.+.+ +.+|+++++.| +++|+++|.++++|++.+++|++++++ +.++-+
T Consensus 273 ~Pvv~~~~--~~~~~~~~~~~~~~i~~-----~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 345 (357)
T PRK00726 273 LPAILVPL--PHAADDHQTANARALVD-----AGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAE 345 (357)
T ss_pred CCEEEecC--CCCCcCcHHHHHHHHHH-----CCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHH
Confidence 99999876 4322 33432 22468888777 899999999999999999999999876 778888
Q ss_pred HHHHHHHHHH
Q 009217 524 ADCNDIHISA 533 (540)
Q Consensus 524 ~~a~~~y~~l 533 (540)
.+++++ .++
T Consensus 346 ~~~~~~-~~~ 354 (357)
T PRK00726 346 RLADLI-EEL 354 (357)
T ss_pred HHHHHH-HHH
Confidence 888774 544
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=3e-27 Score=248.58 Aligned_cols=308 Identities=11% Similarity=0.070 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCC
Q 009217 168 FTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHR 247 (540)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~ 247 (540)
|....+...+.+.+.-...|+||+||++-.++|.+++.. ..+.|+++.+|-.- |...+-. -++.
T Consensus 114 Y~~vN~~fa~~i~~~~~~~d~iwihDyhl~llp~~lr~~-----~~~~~i~~f~Hipf-----P~~e~~~-~lp~----- 177 (460)
T cd03788 114 YVRVNRKFADAIAEVLRPGDLVWVHDYHLLLLPQMLRER-----GPDARIGFFLHIPF-----PSSEIFR-CLPW----- 177 (460)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeChhhhHHHHHHHhh-----CCCCeEEEEEeCCC-----CChHHHh-hCCC-----
Confidence 333344444444443346799999999988888887652 35789999999531 2111100 0111
Q ss_pred CccccCCCCCccchhhhHHHhhccceeeccccchhhhhhccc-CCCchH------HhhhccCceEEeccCCCCCCCCCCC
Q 009217 248 PDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSL-SHGLES------TLAIHQDKLLVAPCGFDSSTWDPSN 320 (540)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~-~~gl~~------~l~~~~~ki~vI~nGvd~~~~~p~~ 320 (540)
...+..++..+|.|.+-+..+++.....-- -.+++. .+..+..++.+||||||++.|.+..
T Consensus 178 ------------~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~ 245 (460)
T cd03788 178 ------------REELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLA 245 (460)
T ss_pred ------------hHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHh
Confidence 011112233344444444433332211000 000000 0011346799999999998886542
Q ss_pred CcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc--C----cEEEEEecCC
Q 009217 321 DKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--G----IQFVFTGTNK 394 (540)
Q Consensus 321 ~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~--~----~~lvi~G~g~ 394 (540)
. ....+..+++..+... +.++++++||+++.||++.+++|++.+++. + ++|+++|.+.
T Consensus 246 ~--------------~~~~~~~~~~~~~~~~--~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~ 309 (460)
T cd03788 246 A--------------SPEVQERAAELRERLG--GRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPS 309 (460)
T ss_pred c--------------CchhHHHHHHHHHhcC--CCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCC
Confidence 1 0112222333334332 358899999999999999999999988752 2 5788887431
Q ss_pred ---Ch---hHHHHHHHHHHHhCC-------CcEEEEE-ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCc---
Q 009217 395 ---LP---SASRALVSFQEELKD-------GIVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA--- 457 (540)
Q Consensus 395 ---~~---~~~~~l~~l~~~~~~-------~~v~f~~-~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~p--- 457 (540)
.+ .+.+++++++++++. ..|++++ .++.+++..+|++||+||+||..|+||++++|||+||+|
T Consensus 310 ~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g 389 (460)
T cd03788 310 RTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPG 389 (460)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCc
Confidence 12 344556666555421 2466554 458888999999999999999999999999999999999
Q ss_pred -eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHh--ccCChHHHHHHH
Q 009217 458 -PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP-LSWKRKIKDAML--QDFSWDADCNDI 529 (540)
Q Consensus 458 -vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~-~~~~~~~~~a~~--~~fsw~~~a~~~ 529 (540)
+|+|+. +|..+.. .+|++++|.|+++++++|.++++++ +.++++++++++ .+|||+..++++
T Consensus 390 ~vV~S~~--~G~~~~~--------~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~ 455 (460)
T cd03788 390 VLILSEF--AGAAEEL--------SGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSF 455 (460)
T ss_pred eEEEecc--ccchhhc--------CCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 899987 7777652 2368999999999999999999855 667777666655 789999999984
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.95 E-value=4.1e-26 Score=233.25 Aligned_cols=334 Identities=13% Similarity=0.029 Sum_probs=214.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||++.+. ..||-..++..|+++|.++||+|+|++....... .. . ...
T Consensus 1 ~~~~~~~------~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~---~-----------------------~~~ 47 (350)
T cd03785 1 RILIAGG------GTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RL---V-----------------------PKA 47 (350)
T ss_pred CEEEEec------CchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hc---c-----------------------ccc
Confidence 4776665 4689999999999999999999999987543111 00 0 013
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCce
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRI 217 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (540)
|++++.++.. .+ .+...+........+......+.+++++ .+|||||+|.+..++.+.++.. ..++|+
T Consensus 48 ~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~pDvI~~~~~~~~~~~~~~a~------~~~~p~ 115 (350)
T cd03785 48 GIPLHTIPVG---GL-RRKGSLKKLKAPFKLLKGVLQARKILKK--FKPDVVVGFGGYVSGPVGLAAK------LLGIPL 115 (350)
T ss_pred CCceEEEEec---Cc-CCCChHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCCCcchHHHHHHH------HhCCCE
Confidence 5666666421 01 1111010000011111112333444443 6899999998655444333322 267899
Q ss_pred EEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHh
Q 009217 218 LLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTL 297 (540)
Q Consensus 218 V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l 297 (540)
+++.|+... + ...+.....+|.|+++|+...+. .
T Consensus 116 v~~~~~~~~------------~---------------------~~~~~~~~~~~~vi~~s~~~~~~-----~-------- 149 (350)
T cd03785 116 VIHEQNAVP------------G---------------------LANRLLARFADRVALSFPETAKY-----F-------- 149 (350)
T ss_pred EEEcCCCCc------------c---------------------HHHHHHHHhhCEEEEcchhhhhc-----C--------
Confidence 876654210 0 01122345689999999876543 1
Q ss_pred hhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHH-HHHH
Q 009217 298 AIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAV 376 (540)
Q Consensus 298 ~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~-Li~A 376 (540)
+..++.+|+||+|.+.+.+. . .+++++++. +.++++++|+....|+.+. +++|
T Consensus 150 --~~~~~~~i~n~v~~~~~~~~-------------------~---~~~~~~~~~--~~~~i~~~~g~~~~~~~~~~l~~a 203 (350)
T cd03785 150 --PKDKAVVTGNPVREEILALD-------------------R---ERARLGLRP--GKPTLLVFGGSQGARAINEAVPEA 203 (350)
T ss_pred --CCCcEEEECCCCchHHhhhh-------------------h---hHHhcCCCC--CCeEEEEECCcHhHHHHHHHHHHH
Confidence 35789999999997765442 1 155666654 3467777887777777654 5688
Q ss_pred HHHHHhcCcEEE-EEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcC
Q 009217 377 VRGAKMRGIQFV-FTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG 455 (540)
Q Consensus 377 ~~~l~~~~~~lv-i~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G 455 (540)
+..+.+.+++++ ++|+| ..+.+++..+++ .++|+|.+.. +....+|+.||++|++|- +.+++|||++|
T Consensus 204 ~~~l~~~~~~~~~i~G~g----~~~~l~~~~~~~-~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G 272 (350)
T cd03785 204 LAELLRKRLQVIHQTGKG----DLEEVKKAYEEL-GVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAELAALG 272 (350)
T ss_pred HHHhhccCeEEEEEcCCc----cHHHHHHHHhcc-CCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHHHhC
Confidence 887765567654 56755 235566666655 3789988765 456789999999998873 58899999999
Q ss_pred CceEEEecCCCc--------cccceeccCCccccceeecCCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChH
Q 009217 456 AAPIAVTSSDIE--------FRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWD 523 (540)
Q Consensus 456 ~pvI~~~~~~gg--------~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~ 523 (540)
+|+|+++. ++ ..+.+.+ +.+|+++++. |+++|+++|..+++|++.+++|+++++. +.+.-+
T Consensus 273 ~Pvv~~~~--~~~~~~~~~~~~~~l~~-----~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~ 345 (350)
T cd03785 273 LPAILIPL--PYAADDHQTANARALVK-----AGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLARPDAAE 345 (350)
T ss_pred CCEEEeec--CCCCCCcHHHhHHHHHh-----CCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence 99999876 43 1234432 2346888876 8999999999999999999999998875 455555
Q ss_pred HHH
Q 009217 524 ADC 526 (540)
Q Consensus 524 ~~a 526 (540)
+++
T Consensus 346 ~i~ 348 (350)
T cd03785 346 RIA 348 (350)
T ss_pred HHH
Confidence 544
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.95 E-value=5.7e-26 Score=237.02 Aligned_cols=305 Identities=11% Similarity=0.075 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCcc
Q 009217 171 FSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDR 250 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 250 (540)
..+...+.+.+.-..-|+|.+||+|-.++|.+++.. ..+.++.+.+|-. +|...+-. -+|.
T Consensus 113 vN~~fA~~i~~~~~~~d~vwvhDYhl~l~p~~lr~~-----~~~~~igfFlHip-----fP~~e~f~-~lp~-------- 173 (456)
T TIGR02400 113 VNRLFAEALAPLLQPGDIVWVHDYHLMLLPAMLREL-----GVQNKIGFFLHIP-----FPSSEIYR-TLPW-------- 173 (456)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecchhhHHHHHHHhh-----CCCCeEEEEEeCC-----CCChHHHh-hCCc--------
Confidence 344444444443234589999999999999888763 3567999999942 22211100 0111
Q ss_pred ccCCCCCccchhhhHHHhhccceeeccccchhhhhhcc---cC-----CCchHHhhhccCceEEeccCCCCCCCCCCCCc
Q 009217 251 LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS---LS-----HGLESTLAIHQDKLLVAPCGFDSSTWDPSNDK 322 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~---~~-----~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~ 322 (540)
..-+..++..||.|..-++.+++.....- .| .++. +..+..++.++|||||++.|.|....
T Consensus 174 ---------r~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~--~~g~~~~v~viP~GID~~~f~~~~~~ 242 (456)
T TIGR02400 174 ---------RRELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVE--SGGRTVRVGAFPIGIDVDRFAEQAKK 242 (456)
T ss_pred ---------HHHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceE--ECCcEEEEEEecCcCCHHHHHHHhcC
Confidence 12334567788888888887776554310 11 0110 11245689999999999988764210
Q ss_pred ccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc------CcEEEEEec----
Q 009217 323 FLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGT---- 392 (540)
Q Consensus 323 ~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~------~~~lvi~G~---- 392 (540)
.........+|++++ +.++++++||+++.||++.+++|++++++. ++.|+++|.
T Consensus 243 -----------~~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg 306 (456)
T TIGR02400 243 -----------PSVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRG 306 (456)
T ss_pred -----------hhHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCcc
Confidence 000111224566652 347899999999999999999999998752 256777752
Q ss_pred -CCC-hhHHHHHHHHHHHhCC-----C--cEEEEE-ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCc----e
Q 009217 393 -NKL-PSASRALVSFQEELKD-----G--IVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA----P 458 (540)
Q Consensus 393 -g~~-~~~~~~l~~l~~~~~~-----~--~v~f~~-~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~p----v 458 (540)
++. ..+++.+++++.+.+. + .+++++ .++.+++..+|++||+||+||..||||+|++||||||+| +
T Consensus 307 ~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~v 386 (456)
T TIGR02400 307 DVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVL 386 (456)
T ss_pred CchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceE
Confidence 111 1233344444433221 1 144444 557888899999999999999999999999999999999 9
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHHHHHH
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHIS 532 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~ 532 (540)
|+|+. +|..+.+. + |++++|.|++++++||.++++ +++.++++.++.++ .+||+...+++ |+.
T Consensus 387 VlS~~--~G~~~~l~-----~---gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~-~l~ 452 (456)
T TIGR02400 387 ILSEF--AGAAQELN-----G---ALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWRED-FLS 452 (456)
T ss_pred EEeCC--CCChHHhC-----C---cEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHH-HHH
Confidence 99998 78777763 2 589999999999999999987 55666666665554 77999999998 453
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.95 E-value=3.8e-25 Score=225.95 Aligned_cols=323 Identities=14% Similarity=0.086 Sum_probs=200.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++++.+ .||-......|+++|.++||+|+|++..+.. ... +. ..
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~-~~~----~~----------------------~~ 47 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGL-EKR----LV----------------------PK 47 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcc-hhc----cc----------------------cc
Confidence 689988764 3444445569999999999999999863321 100 00 01
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
.|++++.++.. .+ .+............+......+.+++++ .+|||||+|.+.+.+.+.++.. +.++|
T Consensus 48 ~g~~~~~i~~~---~~-~~~~~~~~l~~~~~~~~~~~~l~~~i~~--~~pDvVi~~~~~~~~~~~~~~~------~~~~p 115 (348)
T TIGR01133 48 AGIEFYFIPVG---GL-RRKGSFRLIKTPLKLLKAVFQARRILKK--FKPDAVIGFGGYVSGPAGLAAK------LLGIP 115 (348)
T ss_pred CCCceEEEecc---Cc-CCCChHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHH------HcCCC
Confidence 36666666421 01 0100000000001111112233344443 6899999998655554443332 26788
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHH
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLEST 296 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~ 296 (540)
+|++.|+... ....+...+.+|.++++|+...+.+
T Consensus 116 ~v~~~~~~~~---------------------------------~~~~~~~~~~~d~ii~~~~~~~~~~------------ 150 (348)
T TIGR01133 116 LFHHEQNAVP---------------------------------GLTNKLLSRFAKKVLISFPGAKDHF------------ 150 (348)
T ss_pred EEEECCCCCc---------------------------------cHHHHHHHHHhCeeEECchhHhhcC------------
Confidence 8754432100 0011234567999999998664421
Q ss_pred hhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHH-HHH
Q 009217 297 LAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKA 375 (540)
Q Consensus 297 l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~-Li~ 375 (540)
+..+|+||+|...+.+.. .+++++++. +.++++++|+....|++.. +++
T Consensus 151 ------~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~~--~~~~i~~~gg~~~~~~~~~~l~~ 200 (348)
T TIGR01133 151 ------EAVLVGNPVRQEIRSLPV----------------------PRERFGLRE--GKPTILVLGGSQGAKILNELVPK 200 (348)
T ss_pred ------CceEEcCCcCHHHhcccc----------------------hhhhcCCCC--CCeEEEEECCchhHHHHHHHHHH
Confidence 237899999876554321 123456653 3578889998888888654 568
Q ss_pred HHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhc
Q 009217 376 VVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKY 454 (540)
Q Consensus 376 A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~ 454 (540)
|++.+.+.++++++++ |+. ..+.+++.+++++. +.+.|. .. ....+|++||++|.+| + |.+++|||++
T Consensus 201 a~~~l~~~~~~~~~~~-g~~--~~~~l~~~~~~~~l~~~v~~~---~~-~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~ 269 (348)
T TIGR01133 201 ALAKLAEKGIQIVHQT-GKN--DLEKVKNVYQELGIEAIVTFI---DE-NMAAAYAAADLVISRA---G-ASTVAELAAA 269 (348)
T ss_pred HHHHHhhcCcEEEEEC-Ccc--hHHHHHHHHhhCCceEEecCc---cc-CHHHHHHhCCEEEECC---C-hhHHHHHHHc
Confidence 8888766567776544 322 13567776666653 333343 22 5678999999999976 2 6899999999
Q ss_pred CCceEEEecCCCc-c------ccceeccCCccccceeecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 009217 455 GAAPIAVTSSDIE-F------RHFAEFDHESTRFSRFISSTFG--NISLSQALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 455 G~pvI~~~~~~gg-~------~e~v~~~~~~~g~~G~l~~~~d--~~~la~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
|+|+|+++. +| . .+.+. ++.+|+++++.| +++|+++|..+++|++.+++|++++.+
T Consensus 270 g~Pvv~~~~--~~~~~~~~~~~~~i~-----~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 270 GVPAILIPY--PYAADDQYYNAKFLE-----DLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARK 334 (348)
T ss_pred CCCEEEeeC--CCCccchhhHHHHHH-----HCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 999999876 33 2 23454 244578888776 999999999999999999999998864
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=4.5e-25 Score=228.19 Aligned_cols=364 Identities=11% Similarity=0.047 Sum_probs=226.7
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
+.||||+++..+ .+|-...+..|+++|.++||+|.++++.+....+. +..+... .|..
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~----~~~~~~~--~y~~----------- 60 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPV----ITEITKY--LYLK----------- 60 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchH----HHHHHHH--HHHH-----------
Confidence 457999999864 35999999999999999999988888765432110 0000000 0000
Q ss_pred EEcCeeEEEEccCCCCCCC-CCCCCCCCCChhHH-HHHH-HHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcC
Q 009217 135 VVSGIGVTFIQPLHYSSFF-NRESVYGYSDDFER-FTYF-SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQG 211 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~-~~~~~y~~~~~~~r-~~~~-~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~ 211 (540)
-+ ...|.....++ .....+ .....+ +..+ .+.+.+++++ .+||+||+|..... ++. ++. +.
T Consensus 61 ---~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~~~~~~~-~~~-~~~----~~ 124 (380)
T PRK13609 61 ---SY---TIGKELYRLFYYGVEKIY--DKKIFSWYANFGRKRLKLLLQA--EKPDIVINTFPIIA-VPE-LKK----QT 124 (380)
T ss_pred ---HH---HHhHHHHHHHHhccCccc--chHHHHHHHHHHHHHHHHHHHH--hCcCEEEEcChHHH-HHH-HHH----hc
Confidence 00 00000000000 000001 011111 1111 2444555554 68999999854332 222 222 12
Q ss_pred CCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCC
Q 009217 212 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 291 (540)
Q Consensus 212 ~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 291 (540)
..++|++.+++++.. ... ...+.+|.++++|+..++.+... |
T Consensus 125 ~~~ip~~~~~td~~~--------------~~~---------------------~~~~~ad~i~~~s~~~~~~l~~~--g- 166 (380)
T PRK13609 125 GISIPTYNVLTDFCL--------------HKI---------------------WVHREVDRYFVATDHVKKVLVDI--G- 166 (380)
T ss_pred CCCCCeEEEeCCCCC--------------Ccc---------------------cccCCCCEEEECCHHHHHHHHHc--C-
Confidence 357898866654311 000 01345899999999887766542 2
Q ss_pred CchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHH
Q 009217 292 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLE 371 (540)
Q Consensus 292 gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~ 371 (540)
+ +++++.++.|.++.. |.+.. .+..+++++|++.+ ...++++.|++...|++.
T Consensus 167 -i------~~~ki~v~G~p~~~~-f~~~~------------------~~~~~~~~~~l~~~-~~~il~~~G~~~~~k~~~ 219 (380)
T PRK13609 167 -V------PPEQVVETGIPIRSS-FELKI------------------NPDIIYNKYQLCPN-KKILLIMAGAHGVLGNVK 219 (380)
T ss_pred -C------ChhHEEEECcccChH-HcCcC------------------CHHHHHHHcCCCCC-CcEEEEEcCCCCCCcCHH
Confidence 2 457888876665432 32210 23346788888754 234566778999899999
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHH
Q 009217 372 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKA 451 (540)
Q Consensus 372 ~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEA 451 (540)
.+++++... .+++++++| |.++...+.++++++.++ ++|+|+|..+ + +.++|++||++|. ++.|++++||
T Consensus 220 ~li~~l~~~--~~~~~viv~-G~~~~~~~~l~~~~~~~~-~~v~~~g~~~-~-~~~l~~~aD~~v~----~~gg~t~~EA 289 (380)
T PRK13609 220 ELCQSLMSV--PDLQVVVVC-GKNEALKQSLEDLQETNP-DALKVFGYVE-N-IDELFRVTSCMIT----KPGGITLSEA 289 (380)
T ss_pred HHHHHHhhC--CCcEEEEEe-CCCHHHHHHHHHHHhcCC-CcEEEEechh-h-HHHHHHhccEEEe----CCCchHHHHH
Confidence 998887643 578998876 333345677887777664 6899986554 3 5689999999985 5679999999
Q ss_pred HhcCCceEEEecCCCccc----cceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHH
Q 009217 452 LKYGAAPIAVTSSDIEFR----HFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDAD 525 (540)
Q Consensus 452 ma~G~pvI~~~~~~gg~~----e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~ 525 (540)
|+||+|+|+++. .+|.. +.+.. . |+.+...|+++|+++|.++++|++.+++|++++.+ +.++++++
T Consensus 290 ~a~g~PvI~~~~-~~g~~~~n~~~~~~----~---G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i 361 (380)
T PRK13609 290 AALGVPVILYKP-VPGQEKENAMYFER----K---GAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHI 361 (380)
T ss_pred HHhCCCEEECCC-CCCcchHHHHHHHh----C---CcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHH
Confidence 999999999752 14421 12211 2 34455678999999999999999999999988765 67899999
Q ss_pred HHHHHHHHHHHHhcC
Q 009217 526 CNDIHISAYTAIKNL 540 (540)
Q Consensus 526 a~~~y~~lY~~l~~~ 540 (540)
++.+ +++++...||
T Consensus 362 ~~~i-~~~~~~~~~~ 375 (380)
T PRK13609 362 VDDI-LAENHVEPNL 375 (380)
T ss_pred HHHH-HHhhhhhhhh
Confidence 9995 8888766553
No 77
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.92 E-value=2e-23 Score=219.09 Aligned_cols=289 Identities=12% Similarity=0.051 Sum_probs=187.5
Q ss_pred HHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCC
Q 009217 176 LDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNT 255 (540)
Q Consensus 176 ~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 255 (540)
.+++++ ++||+||+|... +.+.++... +..++|+|++.|.+.... ... ..
T Consensus 117 ~~~l~~--~~Pd~v~~~~~~--~~~~~l~~~----~~~~ip~vl~~~~~~~~s------~~~-------------~~--- 166 (425)
T PRK05749 117 RRFLRF--WRPKLVIIMETE--LWPNLIAEL----KRRGIPLVLANARLSERS------FKR-------------YQ--- 166 (425)
T ss_pred HHHHHh--hCCCEEEEEecc--hhHHHHHHH----HHCCCCEEEEeccCChhh------HHH-------------HH---
Confidence 344443 689999998521 122222221 126899998866432100 000 00
Q ss_pred CCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccC
Q 009217 256 KTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKG 335 (540)
Q Consensus 256 ~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~ 335 (540)
....+.+..++.+|.|+++|+..++.+.. .| + +.+ +.+++|+ +.+.+.+..
T Consensus 167 --~~~~~~r~~~~~~d~ii~~S~~~~~~l~~--~g--~------~~~-i~vi~n~-~~d~~~~~~--------------- 217 (425)
T PRK05749 167 --KFKRFYRLLFKNIDLVLAQSEEDAERFLA--LG--A------KNE-VTVTGNL-KFDIEVPPE--------------- 217 (425)
T ss_pred --HHHHHHHHHHHhCCEEEECCHHHHHHHHH--cC--C------CCC-cEecccc-cccCCCChh---------------
Confidence 01234556678899999999998887653 22 1 345 8888885 333222110
Q ss_pred cHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCc
Q 009217 336 KTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGI 413 (540)
Q Consensus 336 k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~ 413 (540)
....+..++++++ + +.++++++|+. .|+.+.|++|++.+.+ ++++|+|+|+|+. ..+++++++++++...
T Consensus 218 ~~~~~~~~r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~--r~~~l~~~~~~~gl~~ 289 (425)
T PRK05749 218 LAARAATLRRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPE--RFKEVEELLKKAGLSY 289 (425)
T ss_pred hHHHHHHHHHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChh--hHHHHHHHHHhCCCcE
Confidence 1113445677776 3 23677888864 5779999999998875 5899999998752 2356777777665433
Q ss_pred EEEEEec------------ChHHHHHHHhcCCEEEE-CCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccc
Q 009217 414 VIFVDSY------------DDALLHLIFSGSDIILC-HSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTR 480 (540)
Q Consensus 414 v~f~~~~------------~~~~~~~~~~~aDi~v~-PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g 480 (540)
+.|.++. ...++..+|+.||++++ ||..|++|++++|||+||+|||+++. .++..|+++.. .
T Consensus 290 ~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~-~~~~~e~~~~~----~ 364 (425)
T PRK05749 290 VRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPH-TFNFKEIFERL----L 364 (425)
T ss_pred EEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCC-ccCHHHHHHHH----H
Confidence 3333211 23467899999999555 68889999999999999999998753 25566765431 1
Q ss_pred cceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Q 009217 481 FSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 481 ~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~l 537 (540)
.+|+++++.|+++|+++|..+++|++.+++|+++|.+.-=+....++++ .++|+..
T Consensus 365 ~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~-~~~l~~~ 420 (425)
T PRK05749 365 QAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRT-LQLLEPY 420 (425)
T ss_pred HCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHH-HHHHHHh
Confidence 2357888899999999999999999999999998875111113555663 6666654
No 78
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.92 E-value=2.4e-23 Score=230.26 Aligned_cols=309 Identities=13% Similarity=0.090 Sum_probs=199.6
Q ss_pred HHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhh-hhcCCCccccCCCcc
Q 009217 172 SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKL-ALCGLDPARLHRPDR 250 (540)
Q Consensus 172 ~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l-~~~g~~~~~~~~~~~ 250 (540)
.+...+.+.+.-..-|+|-+||+|-.++|.+++.. ..+.++.+.+|.. +|...+ .. +|.
T Consensus 134 N~~FA~~i~~~~~~~d~vWvhDYhL~llp~~lR~~-----~~~~~igfFlHiP-----FPs~e~fr~--lp~-------- 193 (797)
T PLN03063 134 NRMFLDVVKENYEEGDVVWCHDYHLMFLPQYLKEY-----NNKMKVGWFLHTP-----FPSSEIYKT--LPS-------- 193 (797)
T ss_pred HHHHHHHHHHhcCCCCEEEEecchhhhHHHHHHHh-----CCCCcEEEEecCC-----CCCHHHHhh--CCC--------
Confidence 34444444433233489999999999999888763 3788999999963 222111 11 111
Q ss_pred ccCCCCCccchhhhHHHhhccceeeccccchhhhhhc---ccC-----CCchHHhhhccCceEEeccCCCCCCCCCCCCc
Q 009217 251 LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLS-----HGLESTLAIHQDKLLVAPCGFDSSTWDPSNDK 322 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~-----~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~ 322 (540)
..-+-.++..||.|-+.+..+++..... -.+ .++ ....+..++.+||||||++.|.+....
T Consensus 194 ---------r~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i--~~~gr~~~I~viP~GID~~~f~~~~~~ 262 (797)
T PLN03063 194 ---------RSELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGV--VDQGKVTRVAVFPIGIDPERFINTCEL 262 (797)
T ss_pred ---------HHHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCce--EECCeEEEEEEEecccCHHHHHHHhcC
Confidence 0112234445555555555554433221 000 000 001134679999999999877653110
Q ss_pred ccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCc----EEEEEecCC--
Q 009217 323 FLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGI----QFVFTGTNK-- 394 (540)
Q Consensus 323 ~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~----~lvi~G~g~-- 394 (540)
+ ........+++.++ +.++++++||+++.||++.+++|++++++ +++ .|+.++ ++
T Consensus 263 -------~----~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia-~psr 325 (797)
T PLN03063 263 -------P----EVKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIA-VPTR 325 (797)
T ss_pred -------h----hHHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEe-cCCC
Confidence 0 00111223444443 34789999999999999999999999875 233 344343 22
Q ss_pred -C-hh---HHHHHHHHHHHhCC--C-----cEEEEE-ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCc----
Q 009217 395 -L-PS---ASRALVSFQEELKD--G-----IVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA---- 457 (540)
Q Consensus 395 -~-~~---~~~~l~~l~~~~~~--~-----~v~f~~-~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~p---- 457 (540)
+ +. +++++++++...+. + -|+++. .++.+++..+|++||+||+||.+|+||++.+||||||+|
T Consensus 326 ~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gv 405 (797)
T PLN03063 326 NDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGV 405 (797)
T ss_pred CchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCC
Confidence 1 22 22333333322211 1 133333 457788899999999999999999999999999999998
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAY 534 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY 534 (540)
+|+|.. +|.++.+. .+|++++|.|++++++||.++++ +++.++++.++.++ ..++|..-+++ +++.+
T Consensus 406 lVlSe~--~G~~~~l~-------~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~-fl~~l 475 (797)
T PLN03063 406 LVLSEF--AGAGQSLG-------AGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADD-FMSEL 475 (797)
T ss_pred EEeeCC--cCchhhhc-------CCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHH-HHHHH
Confidence 999998 88888652 22699999999999999999998 77777776665554 88999999999 57777
Q ss_pred HHHh
Q 009217 535 TAIK 538 (540)
Q Consensus 535 ~~l~ 538 (540)
++++
T Consensus 476 ~~~~ 479 (797)
T PLN03063 476 NDII 479 (797)
T ss_pred HHHh
Confidence 6653
No 79
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.91 E-value=4.1e-23 Score=209.63 Aligned_cols=415 Identities=16% Similarity=0.103 Sum_probs=246.9
Q ss_pred CCCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHH---------cCCeEEEEeecCCCCcc
Q 009217 35 PEGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQR---------KGHLVEVILPKYACMNL 105 (540)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~---------~Gh~V~vi~p~~~~~~~ 105 (540)
+|.+..+..+..........+.++++++... ...||.+.-+..-+-.+.. .||+|.+++........
T Consensus 13 qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~----~~~gg~er~~v~~~~~l~s~~~~lg~~d~G~qV~~l~~h~~al~~ 88 (495)
T KOG0853|consen 13 QKVLWKAMIEKSLLVSTPEKPFEHVTFIHPD----LGIGGAERLVVDAAVHLLSGQDVLGLPDTGGQVVYLTSHEDALEM 88 (495)
T ss_pred hhhhhhhhhhhhcccccccccchhheeeccc----cccCchHHHhHHHHHHHHhcccccCCCCCCceEEEEehhhhhhcc
Confidence 3444444444444434455677889988654 4679999999999999999 99999999976554311
Q ss_pred cc----ccCcceeeeeeeeecCCeeeeeE-EEEE--EEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 009217 106 DG----VQGLREIKAECYSYFNGQLHANK-IWIG--VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDY 178 (540)
Q Consensus 106 ~~----~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~ 178 (540)
+- .....+......++-.+-..... .++. ...++.+.++.-. ..+......+.+..+ |..+...+
T Consensus 89 ~~~~~~~~~~l~~~~~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~--~~~k~~~~~d~~i~d------~~~~~~~l 160 (495)
T KOG0853|consen 89 PLLLRCFAETLDGTPPILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFG--ILFKWAEKVDPIIED------FVSACVPL 160 (495)
T ss_pred hHHHHHHHHHhcCCCceEEEEeecCcccchhhhhhhccceeEEEEeccc--hhhhhhhhhceeecc------hHHHHHHH
Confidence 10 00000000000000000000000 0000 1124444444210 000000000111111 12233333
Q ss_pred HHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCc
Q 009217 179 IVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTH 258 (540)
Q Consensus 179 ~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 258 (540)
.+..+. ||++|-|.|...+...++.. ..+++-+++-|.++.... .
T Consensus 161 ~~~~~~-p~~~~~i~~~~h~~~~lla~------r~g~~~~l~~~~l~~~e~------e---------------------- 205 (495)
T KOG0853|consen 161 LKQLSG-PDVIIKIYFYCHFPDSLLAK------RLGVLKVLYRHALDKIEE------E---------------------- 205 (495)
T ss_pred HHHhcC-CcccceeEEeccchHHHhcc------ccCccceeehhhhhhhhh------h----------------------
Confidence 444333 99999998877777666533 256788888775432100 0
Q ss_pred cchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHH
Q 009217 259 LVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTV 338 (540)
Q Consensus 259 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~ 338 (540)
....+|.+++-|...+......... + ...++.+.+.++|.+.+.+. .|. .+.+
T Consensus 206 -------~~~~~~~~~~ns~~~~~~f~~~~~~------L--~~~d~~~~y~ei~~s~~~~~-------~~~-----~~~~ 258 (495)
T KOG0853|consen 206 -------TTGLAWKILVNSYFTKRQFKATFVS------L--SNSDITSTYPEIDGSWFTYG-------QYE-----SHLE 258 (495)
T ss_pred -------hhhccceEecchhhhhhhhhhhhhh------c--CCCCcceeeccccchhcccc-------ccc-----cchh
Confidence 0112344443333332222211100 1 23348888899998766542 111 0111
Q ss_pred HHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh-------cCcEEEEEecC-------CChhHHHHHHH
Q 009217 339 CKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM-------RGIQFVFTGTN-------KLPSASRALVS 404 (540)
Q Consensus 339 ~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~-------~~~~lvi~G~g-------~~~~~~~~l~~ 404 (540)
.+...|...+... ...++.-+-|+.|.||++++++|+..+.. .+.+++++|+. .+-.+..++.+
T Consensus 259 ~~~~~r~~~~v~~--~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~ 336 (495)
T KOG0853|consen 259 LRLPVRLYRGVSG--IDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLS 336 (495)
T ss_pred cccccceeeeecc--cceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHH
Confidence 2222223333332 23677788999999999999999988874 24678888832 11245567888
Q ss_pred HHHHhCC--CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccc
Q 009217 405 FQEELKD--GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFS 482 (540)
Q Consensus 405 l~~~~~~--~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~ 482 (540)
+++++.. +.|.|+...+......+++.+.+.......|+||+|.+|||+||+||||++. ||..|+|. +|.|
T Consensus 337 lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~--GGP~EiV~-----~~~t 409 (495)
T KOG0853|consen 337 LIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNN--GGPAEIVV-----HGVT 409 (495)
T ss_pred HHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecC--CCceEEEE-----cCCc
Confidence 9999864 6677766677766666667676655544459999999999999999999999 99999998 4778
Q ss_pred eeecCCCCHH---HHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHHHHH
Q 009217 483 RFISSTFGNI---SLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAY 534 (540)
Q Consensus 483 G~l~~~~d~~---~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~lY 534 (540)
||+++| +.+ .+++++.++.+||++|.+|++++.+ +.|||..+.+++ .++-
T Consensus 410 G~l~dp-~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~~~~ri-~~~~ 465 (495)
T KOG0853|consen 410 GLLIDP-GQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQHYSERI-ASVL 465 (495)
T ss_pred ceeeCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHh
Confidence 899999 555 6999999999999999999999976 669999888885 5553
No 80
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.91 E-value=2.5e-23 Score=230.59 Aligned_cols=309 Identities=12% Similarity=0.083 Sum_probs=196.5
Q ss_pred HHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 172 SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 172 ~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
.+...+.+.+.-..-|+|.+||+|-.++|.+++.. ..+.|+.+.+|-. +|...+-.+ +|.
T Consensus 120 N~~fA~~~~~~~~~~d~vwvhDYhl~l~p~~lr~~-----~~~~~igfFlH~p-----fP~~~~f~~-lp~--------- 179 (726)
T PRK14501 120 NQRFAEAIAAIARPGDVVWVHDYQLMLLPAMLRER-----LPDARIGFFLHIP-----FPSFEVFRL-LPW--------- 179 (726)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCchhhhHHHHHHhh-----CCCCcEEEEeeCC-----CCChHHHhh-CCC---------
Confidence 34444444443234599999999999999888653 3678999999963 222111100 111
Q ss_pred cCCCCCccchhhhHHHhhccceeeccccchhhhhhc---ccC-----CCchHHhhhccCceEEeccCCCCCCCCCCCCcc
Q 009217 252 QDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLS-----HGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKF 323 (540)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~-----~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~ 323 (540)
..-+-.++-.+|.|-.-+..+++..... ..+ .++ .+..+..++.++|||||++.|.+....
T Consensus 180 --------~~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~--~~~gr~~~v~v~p~GID~~~f~~~~~~- 248 (726)
T PRK14501 180 --------REEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEI--RLGGRIVRVDAFPMGIDYDKFHNSAQD- 248 (726)
T ss_pred --------hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeE--EECCEEEEEEEEECeEcHHHHHHHhcC-
Confidence 0112223444555544444443332110 000 000 001134578999999999988764210
Q ss_pred cccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc------CcEEEEEecCC--C
Q 009217 324 LTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNK--L 395 (540)
Q Consensus 324 l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~------~~~lvi~G~g~--~ 395 (540)
. ........+|+.+ ++.++++++||+++.||+..+++|++++++. +++|+++|.+. .
T Consensus 249 -------~---~~~~~~~~lr~~~-----~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~ 313 (726)
T PRK14501 249 -------P---EVQEEIRRLRQDL-----RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTG 313 (726)
T ss_pred -------c---hHHHHHHHHHHHc-----CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcc
Confidence 0 0011222344443 2357999999999999999999999998752 36888887321 1
Q ss_pred -h---hHHHHHHHHHHHhCC-------CcE-EEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCc----eE
Q 009217 396 -P---SASRALVSFQEELKD-------GIV-IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA----PI 459 (540)
Q Consensus 396 -~---~~~~~l~~l~~~~~~-------~~v-~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~p----vI 459 (540)
+ .+++++++++.+.+. ..| .|.+.++.+++..+|++||+|++||..|+||+|.+|||+||+| +|
T Consensus 314 ~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~v 393 (726)
T PRK14501 314 VPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLI 393 (726)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEE
Confidence 2 344455555554331 113 3555678889999999999999999999999999999999553 44
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHh--ccCChHHHHHHHHHHHHHH
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP-LSWKRKIKDAML--QDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~-~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~ 536 (540)
+|.. +|+.++++. |++++|.|+++++++|.++++++ +.+.+..+++++ ..|||+..+++ |++.|++
T Consensus 394 ls~~-~G~~~~l~~---------~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~-~l~~l~~ 462 (726)
T PRK14501 394 LSEM-AGAAAELAE---------ALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASD-FLDELRE 462 (726)
T ss_pred Eecc-cchhHHhCc---------CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHH
Confidence 4443 277676642 58999999999999999998854 333333334443 78999999999 6999887
Q ss_pred H
Q 009217 537 I 537 (540)
Q Consensus 537 l 537 (540)
+
T Consensus 463 ~ 463 (726)
T PRK14501 463 A 463 (726)
T ss_pred H
Confidence 6
No 81
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.91 E-value=2e-23 Score=190.97 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=142.1
Q ss_pred HHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHH---hcCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEE
Q 009217 340 KVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAK---MRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVI 415 (540)
Q Consensus 340 ~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~---~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~ 415 (540)
|+..++..+.+. +.++++++||+.+.||++.+++|+..+. ..+++|+|+|++. ....++.+++.++. ++++
T Consensus 2 ~~~~~~~~~~~~--~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~---~~~~~~~~~~~~~~~~~i~ 76 (172)
T PF00534_consen 2 KDKLREKLKIPD--KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE---YKKELKNLIEKLNLKENII 76 (172)
T ss_dssp HHHHHHHTTT-T--TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC---HHHHHHHHHHHTTCGTTEE
T ss_pred hHHHHHHcCCCC--CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc---ccccccccccccccccccc
Confidence 445666666654 4689999999999999999999999987 3689999999653 46667777777664 7999
Q ss_pred EEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHH
Q 009217 416 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLS 495 (540)
Q Consensus 416 f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la 495 (540)
|++..+.+++..+|+.||++++||.+|+||++++|||+||+|||+++. |+..|++.+ +.+|+++++.++++++
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~--~~~~e~~~~-----~~~g~~~~~~~~~~l~ 149 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDI--GGNNEIIND-----GVNGFLFDPNDIEELA 149 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESS--THHHHHSGT-----TTSEEEESTTSHHHHH
T ss_pred ccccccccccccccccceeccccccccccccccccccccccceeeccc--cCCceeecc-----ccceEEeCCCCHHHHH
Confidence 999888888899999999999999999999999999999999999998 999999974 4568999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHh
Q 009217 496 QALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 496 ~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
++|.+++++++.++.|++++++
T Consensus 150 ~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 150 DAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHhcC
Confidence 9999999999999999998863
No 82
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.91 E-value=1.9e-22 Score=208.40 Aligned_cols=271 Identities=14% Similarity=0.008 Sum_probs=183.5
Q ss_pred HHHHHHHHHcCCCCCEEEEcC-CchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 173 RASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~pDIIH~h~-~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
+.+.+++++ .+|||||+|. |.......++... ...+..++|++.+++|+... ...
T Consensus 90 ~~l~~~i~~--~~pDvIi~thp~~~~~~~~~l~~~-~~~~~~~~p~~~~~tD~~~~-------------~~~-------- 145 (382)
T PLN02605 90 REVAKGLMK--YKPDIIVSVHPLMQHVPLRVLRWQ-GKELGKKIPFTTVVTDLGTC-------------HPT-------- 145 (382)
T ss_pred HHHHHHHHh--cCcCEEEEeCcCcccCHHHHHHHH-hhccCCCCCEEEEECCCCCc-------------Ccc--------
Confidence 344455544 6899999964 4433322223221 11113578999888764200 000
Q ss_pred cCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcc
Q 009217 252 QDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAE 331 (540)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~ 331 (540)
| ..+.+|.++++|+..++++... | + +++|+.++++++|.+.+.+..
T Consensus 146 --w-----------~~~~~d~~~~~s~~~~~~l~~~--g--~------~~~ki~v~g~~v~~~f~~~~~----------- 191 (382)
T PLN02605 146 --W-----------FHKGVTRCFCPSEEVAKRALKR--G--L------EPSQIRVYGLPIRPSFARAVR----------- 191 (382)
T ss_pred --c-----------ccCCCCEEEECCHHHHHHHHHc--C--C------CHHHEEEECcccCHhhccCCC-----------
Confidence 0 1245899999999888776542 2 2 568999999999865433321
Q ss_pred cccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHH------hcCcE-EEEEecCCChhHHHHHHH
Q 009217 332 DMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAK------MRGIQ-FVFTGTNKLPSASRALVS 404 (540)
Q Consensus 332 ~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~------~~~~~-lvi~G~g~~~~~~~~l~~ 404 (540)
.+..+|+++|++.+ .++++++|+....|++..+++++..+. ..+.+ ++++|.+ +.+.+.+++
T Consensus 192 -------~~~~~r~~~gl~~~--~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~--~~~~~~L~~ 260 (382)
T PLN02605 192 -------PKDELRRELGMDED--LPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN--KKLQSKLES 260 (382)
T ss_pred -------CHHHHHHHcCCCCC--CcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC--HHHHHHHHh
Confidence 35668899999753 588999999999999999999997654 24566 4566644 334455554
Q ss_pred HHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecC----CCccccceeccCCccc
Q 009217 405 FQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSS----DIEFRHFAEFDHESTR 480 (540)
Q Consensus 405 l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~----~gg~~e~v~~~~~~~g 480 (540)
... ..+|+|+|..+ +++++|++||++|.+| .|++++|||+||+|+|+++.. .|+...+++ .|
T Consensus 261 ~~~---~~~v~~~G~~~--~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-----~g 326 (382)
T PLN02605 261 RDW---KIPVKVRGFVT--NMEEWMGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-----NG 326 (382)
T ss_pred hcc---cCCeEEEeccc--cHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-----CC
Confidence 421 25788887664 4779999999999876 478999999999999999831 134433333 22
Q ss_pred cceeecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHh--ccCChHHHHHHH
Q 009217 481 FSRFISSTFGNISLSQALEEIKNN-PLSWKRKIKDAML--QDFSWDADCNDI 529 (540)
Q Consensus 481 ~~G~l~~~~d~~~la~ai~~l~~~-~~~~~~~~~~a~~--~~fsw~~~a~~~ 529 (540)
. |+. ..|+++|+++|..+++| ++.+++|++++++ ...+++.+++.+
T Consensus 327 ~-g~~--~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l 375 (382)
T PLN02605 327 F-GAF--SESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDL 375 (382)
T ss_pred c-eee--cCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 2 344 37899999999999988 9999999998865 567777777764
No 83
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=7.7e-22 Score=204.27 Aligned_cols=225 Identities=11% Similarity=0.064 Sum_probs=154.7
Q ss_pred hhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHh
Q 009217 268 VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQL 347 (540)
Q Consensus 268 ~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~ 347 (540)
..+|.+++.|+..++.+... | + +.+++.++.|+++.. |.+.. .+.++++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~--g--i------~~~ki~v~GiPv~~~-f~~~~------------------~~~~~~~~~ 196 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDV--G--I------DPSTVKVTGIPIDNK-FETPI------------------DQKQWLIDN 196 (391)
T ss_pred CCCCEEEECCHHHHHHHHHc--C--C------CHHHEEEECeecChH-hcccc------------------cHHHHHHHc
Confidence 45889999999887776542 2 2 457888888887643 32211 234567788
Q ss_pred CCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 009217 348 GLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHL 427 (540)
Q Consensus 348 gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~ 427 (540)
|++.+ ...++++.|++...||++.+++++... ..++++++++ |..+...+.+++.... .++|.|+|.. + .++.
T Consensus 197 ~l~~~-~~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~-G~~~~l~~~l~~~~~~--~~~v~~~G~~-~-~~~~ 269 (391)
T PRK13608 197 NLDPD-KQTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMIC-GKSKELKRSLTAKFKS--NENVLILGYT-K-HMNE 269 (391)
T ss_pred CCCCC-CCEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEc-CCCHHHHHHHHHHhcc--CCCeEEEecc-c-hHHH
Confidence 88754 234567789999999999999986322 2478987775 4333333444433221 2578887654 3 4678
Q ss_pred HHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc-CCccccceeecCCCCHHHHHHHHHHHhcCHH
Q 009217 428 IFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD-HESTRFSRFISSTFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 428 ~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~-~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~ 506 (540)
+|++||++|. ++.|+++.|||++|+|+|+++. .+| .|..... ....|. |++ ..++++++++|..+++|++
T Consensus 270 ~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~-~pg-qe~~N~~~~~~~G~-g~~--~~~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 270 WMASSQLMIT----KPGGITISEGLARCIPMIFLNP-APG-QELENALYFEEKGF-GKI--ADTPEEAIKIVASLTNGNE 340 (391)
T ss_pred HHHhhhEEEe----CCchHHHHHHHHhCCCEEECCC-CCC-cchhHHHHHHhCCc-EEE--eCCHHHHHHHHHHHhcCHH
Confidence 9999999997 4679999999999999999853 133 2221100 000121 333 4588899999999999999
Q ss_pred HHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHh
Q 009217 507 SWKRKIKDAML--QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 507 ~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l~ 538 (540)
.+++|++++.+ +.|+|+.+++++ .++++.+.
T Consensus 341 ~~~~m~~~~~~~~~~~s~~~i~~~l-~~l~~~~~ 373 (391)
T PRK13608 341 QLTNMISTMEQDKIKYATQTICRDL-LDLIGHSS 373 (391)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH-HHHhhhhh
Confidence 99999999876 789999999995 88877653
No 84
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.89 E-value=3.1e-21 Score=198.80 Aligned_cols=265 Identities=15% Similarity=0.112 Sum_probs=174.3
Q ss_pred cCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccch
Q 009217 182 SRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVN 261 (540)
Q Consensus 182 ~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 261 (540)
++.+.+|+..+...+.. ++.. +.+.++|+.++|....- + +.+. ....
T Consensus 99 ~~~~~~i~~~~~P~~~~---~~~~------~~~~~~Vyd~~D~~~~~--~-------~~~~---------------~~~~ 145 (373)
T cd04950 99 LGFGRPILWYYTPYTLP---VAAL------LQASLVVYDCVDDLSAF--P-------GGPP---------------ELLE 145 (373)
T ss_pred cCCCCcEEEEeCccHHH---HHhh------cCCCeEEEEcccchhcc--C-------CCCH---------------HHHH
Confidence 35677788876532222 2211 26789999999732100 0 0000 1124
Q ss_pred hhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHH
Q 009217 262 ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 341 (540)
Q Consensus 262 ~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~ 341 (540)
.++..++.||.|+++|+...+.+.. ...++++||||+|.+.|.+..... ..
T Consensus 146 ~e~~~~~~ad~vi~~S~~l~~~~~~-------------~~~~i~~i~ngvd~~~f~~~~~~~---------------~~- 196 (373)
T cd04950 146 AERRLLKRADLVFTTSPSLYEAKRR-------------LNPNVVLVPNGVDYEHFAAARDPP---------------PP- 196 (373)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHhh-------------CCCCEEEcccccCHHHhhcccccC---------------CC-
Confidence 5677889999999999988765543 136899999999999887642110 00
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecC
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD 421 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~ 421 (540)
.+... ..+.+.++|+|++.+.++++.+.++++. .++++|+|+|.++. . . ....+ ...+||+|+|..+
T Consensus 197 -~~~~~----~~~~~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~~~~-~-~-~~~~~---~~~~nV~~~G~~~ 263 (373)
T cd04950 197 -PADLA----ALPRPVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGPVDV-S-I-DPSAL---LRLPNVHYLGPKP 263 (373)
T ss_pred -hhHHh----cCCCCEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECCCcC-c-c-ChhHh---ccCCCEEEeCCCC
Confidence 01111 1235789999999998888766555442 25899999997621 1 1 11111 1137999999999
Q ss_pred hHHHHHHHhcCCEEEECCCC-----CCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHH
Q 009217 422 DALLHLIFSGSDIILCHSFH-----DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQ 496 (540)
Q Consensus 422 ~~~~~~~~~~aDi~v~PS~~-----E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ 496 (540)
.++++.+++++|++++|+.. +.+|+.++||||||+|||+++. ++++... + |.++.+.|++++++
T Consensus 264 ~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-----~~~~~~~----~--~~~~~~~d~~~~~~ 332 (373)
T cd04950 264 YKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-----PEVRRYE----D--EVVLIADDPEEFVA 332 (373)
T ss_pred HHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-----HHHHhhc----C--cEEEeCCCHHHHHH
Confidence 89999999999999999863 4689999999999999999876 4444421 1 13334568999999
Q ss_pred HHHHHhcCH-HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 009217 497 ALEEIKNNP-LSWKRKIKDAMLQDFSWDADCNDIHISAY 534 (540)
Q Consensus 497 ai~~l~~~~-~~~~~~~~~a~~~~fsw~~~a~~~y~~lY 534 (540)
+|.+++.++ ....+...+ ..+.|||+..++++ .+..
T Consensus 333 ai~~~l~~~~~~~~~~~~~-~~~~~sW~~~a~~~-~~~l 369 (373)
T cd04950 333 AIEKALLEDGPARERRRLR-LAAQNSWDARAAEM-LEAL 369 (373)
T ss_pred HHHHHHhcCCchHHHHHHH-HHHHCCHHHHHHHH-HHHH
Confidence 999965433 222222222 45789999999995 6443
No 85
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.88 E-value=1.6e-20 Score=178.57 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=90.8
Q ss_pred EEecccccCCHHHHHHHHHHHHhc--CcEEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEEec-ChHHHHHHHhcCCEE
Q 009217 360 CIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSY-DDALLHLIFSGSDII 435 (540)
Q Consensus 360 ~vgrl~~~KG~~~Li~A~~~l~~~--~~~lvi~G~g~~~~~~~~l~~l~~~~~-~~~v~f~~~~-~~~~~~~~~~~aDi~ 435 (540)
++|++.+.||++.+++|+..+.+. +++++++|.+.+ ....+.+..... .++|.+++.+ ++++...++++||++
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~ 185 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPE---REYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVF 185 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC---hHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEE
Confidence 899999999999999999999763 899999997653 222333233333 3799999887 556667777779999
Q ss_pred EECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec
Q 009217 436 LCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF 474 (540)
Q Consensus 436 v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~ 474 (540)
++||..|++|.+++|||+||+|+|+++. ++..|++.+
T Consensus 186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~--~~~~e~i~~ 222 (229)
T cd01635 186 VLPSLREGFGLVVLEAMACGLPVIATDV--GGPPEIVED 222 (229)
T ss_pred EecccccCcChHHHHHHhCCCCEEEcCC--CCcceEEEC
Confidence 9999999999999999999999999998 999998764
No 86
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.84 E-value=6.3e-19 Score=182.34 Aligned_cols=202 Identities=11% Similarity=0.016 Sum_probs=136.3
Q ss_pred HHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHH
Q 009217 266 GVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ 345 (540)
Q Consensus 266 ~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~ 345 (540)
..+.+|.++++|+..++.... . ..++.++.|.+..... +. ..+..+++
T Consensus 131 ~~~~~d~i~~~~~~~~~~~~~--~-----------g~~~~~~G~p~~~~~~-~~------------------~~~~~~~~ 178 (380)
T PRK00025 131 IAKATDHVLALFPFEAAFYDK--L-----------GVPVTFVGHPLADAIP-LL------------------PDRAAARA 178 (380)
T ss_pred HHHHHhhheeCCccCHHHHHh--c-----------CCCeEEECcCHHHhcc-cc------------------cChHHHHH
Confidence 356789999999876665432 1 1235555555432211 00 02445777
Q ss_pred HhCCCCCCCceEEEEEe-ccccc-CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEEec
Q 009217 346 QLGLSKDASTIVVGCIF-SDVSD-VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEEL-KDGIVIFVDSY 420 (540)
Q Consensus 346 ~~gl~~~~~~~lv~~vg-rl~~~-KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~-~~~~v~f~~~~ 420 (540)
++|++.+. ..++++.| |.... ++++.+++|++.+.+ ++++++++|.++ ...+.++++.+++ + -++.+.
T Consensus 179 ~l~~~~~~-~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~--~~~~~~~~~~~~~~~-~~v~~~--- 251 (380)
T PRK00025 179 RLGLDPDA-RVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP--KRREQIEEALAEYAG-LEVTLL--- 251 (380)
T ss_pred HcCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh--hhHHHHHHHHhhcCC-CCeEEE---
Confidence 88886542 22344444 45444 447889999998865 378999988322 3456677666655 3 245543
Q ss_pred ChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe---------------cCCCccccceeccCCccccceee
Q 009217 421 DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT---------------SSDIEFRHFAEFDHESTRFSRFI 485 (540)
Q Consensus 421 ~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~---------------~~~gg~~e~v~~~~~~~g~~G~l 485 (540)
+ .++..+|++||++|+|| |.+.+|||++|+|+|++. .+.+++++++.+.. ...+++
T Consensus 252 ~-~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~ 322 (380)
T PRK00025 252 D-GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRE---LVPELL 322 (380)
T ss_pred c-ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCC---cchhhc
Confidence 2 34678999999999998 889999999999999871 11266677765321 234578
Q ss_pred cCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009217 486 SSTFGNISLSQALEEIKNNPLSWKRKIKDA 515 (540)
Q Consensus 486 ~~~~d~~~la~ai~~l~~~~~~~~~~~~~a 515 (540)
.+..+++.|++++..+++|++.+++|++++
T Consensus 323 ~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 352 (380)
T PRK00025 323 QEEATPEKLARALLPLLADGARRQALLEGF 352 (380)
T ss_pred CCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888899999999999999999999998875
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.84 E-value=3e-19 Score=183.61 Aligned_cols=275 Identities=12% Similarity=0.097 Sum_probs=177.8
Q ss_pred HHHHHHHHHcCCCCCEEEEcC-CchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 173 RASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~pDIIH~h~-~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
..+.+.+++ .+||+||+|. +.+++.+.++.. ..++|++++-++....+.+ . .+
T Consensus 76 ~~l~~~l~~--~~pDiv~~~gd~~~~la~a~aa~------~~~ipv~h~~~g~~s~~~~------------~------~~ 129 (365)
T TIGR00236 76 EGLEELLLE--EKPDIVLVQGDTTTTLAGALAAF------YLQIPVGHVEAGLRTGDRY------------S------PM 129 (365)
T ss_pred HHHHHHHHH--cCCCEEEEeCCchHHHHHHHHHH------HhCCCEEEEeCCCCcCCCC------------C------CC
Confidence 334444443 6899999995 666666555543 2689988654432110000 0 00
Q ss_pred cCCCCCccchhhhHHH-hhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCC-CCCCCCCCCCcccccccC
Q 009217 252 QDNTKTHLVNILKGGV-VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGF-DSSTWDPSNDKFLTENYC 329 (540)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGv-d~~~~~p~~~~~l~~~~~ 329 (540)
. ....+..+ +.||.++++|+..++.+... | + +++++.+++||+ |...+.+..
T Consensus 130 ~-------~~~~r~~~~~~ad~~~~~s~~~~~~l~~~--G--~------~~~~I~vign~~~d~~~~~~~~--------- 183 (365)
T TIGR00236 130 P-------EEINRQLTGHIADLHFAPTEQAKDNLLRE--N--V------KADSIFVTGNTVIDALLTNVEI--------- 183 (365)
T ss_pred c-------cHHHHHHHHHHHHhccCCCHHHHHHHHHc--C--C------CcccEEEeCChHHHHHHHHHhh---------
Confidence 0 01112222 35899999999998877642 2 2 568999999996 432111100
Q ss_pred cccccCcHHHHHHHHHHhCCCCCCCceEEEEEe-cc-cccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHH
Q 009217 330 AEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIF-SD-VSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSF 405 (540)
Q Consensus 330 ~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vg-rl-~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l 405 (540)
..+..++++++.. .+++++.+ |. ...||++.+++|+..+.+ +++++++.| ++++.....+.
T Consensus 184 --------~~~~~~~~~~~~~----~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~-~~~~~~~~~~~-- 248 (365)
T TIGR00236 184 --------AYSSPVLSEFGED----KRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPV-HLNPVVREPLH-- 248 (365)
T ss_pred --------ccchhHHHhcCCC----CCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEEC-CCChHHHHHHH--
Confidence 0123455566521 23455554 43 456899999999998864 378999887 33333333332
Q ss_pred HHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEE-ecCCCccccceeccCCccccce
Q 009217 406 QEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAEFDHESTRFSR 483 (540)
Q Consensus 406 ~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~~~~~~~g~~G 483 (540)
+.++. ++|+|++.........+++.||+++.|| |.+++|||+||+|+|++ +. |+.+|++.. |. +
T Consensus 249 -~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~--~~~~e~~~~-----g~-~ 314 (365)
T TIGR00236 249 -KHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDT--TERPETVEA-----GT-N 314 (365)
T ss_pred -HHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCC--CCChHHHhc-----Cc-e
Confidence 32332 6899998877767778999999999998 56689999999999996 55 788888762 32 3
Q ss_pred eecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHH
Q 009217 484 FISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDI 529 (540)
Q Consensus 484 ~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~ 529 (540)
+++ +.|++++++++..+++|++.+++++.+... +..+++++++.+
T Consensus 315 ~lv-~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 315 KLV-GTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEEL 361 (365)
T ss_pred EEe-CCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHH
Confidence 455 478999999999999999999988765521 345666666654
No 88
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.84 E-value=1.2e-18 Score=180.89 Aligned_cols=300 Identities=8% Similarity=0.041 Sum_probs=197.5
Q ss_pred HHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhh-hhcCCCccccCCCcc
Q 009217 172 SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKL-ALCGLDPARLHRPDR 250 (540)
Q Consensus 172 ~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l-~~~g~~~~~~~~~~~ 250 (540)
.+...+.+.+.-..-|+|-+||+|-.++|.+++.. ..+.++-+.+|-. +|...+ .. +|.
T Consensus 119 N~~FA~~i~~~~~~~d~vWVhDYhL~llp~~LR~~-----~~~~~IgfFlHiP-----FPs~eifr~--LP~-------- 178 (487)
T TIGR02398 119 NRAFAEAACLEAAEGATVWVHDYNLWLVPGYIRQL-----RPDLKIAFFHHTP-----FPSADVFNI--LPW-------- 178 (487)
T ss_pred HHHHHHHHHHhcCCCCEEEEecchhhHHHHHHHHh-----CCCCeEEEEeeCC-----CCChHHHhh--CCc--------
Confidence 34444444433234499999999999999888763 3677899999953 222111 11 111
Q ss_pred ccCCCCCccchhhhHHHhhccceeeccccchhhhhhc---ccCCCchH--------------------------Hhhhcc
Q 009217 251 LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLSHGLES--------------------------TLAIHQ 301 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~~gl~~--------------------------~l~~~~ 301 (540)
..-+-.++-.||.|-+-+..+++..... ..| ++. .+..+.
T Consensus 179 ---------r~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg--~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~ 247 (487)
T TIGR02398 179 ---------REQIIGSLLCCDYIGFHIPRYVENFVDAARGLMP--LQTVSRQNVDPRFITVGTALGEERMTTALDTGNRV 247 (487)
T ss_pred ---------hHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhC--CccccccccccccccccccccccccccceeECCEE
Confidence 1122234455666665555555433221 000 000 000133
Q ss_pred CceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHH
Q 009217 302 DKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAK 381 (540)
Q Consensus 302 ~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~ 381 (540)
-++.++|+|||++.|.+.... ..-....+.+|++++ +.+++++++|+++.||++..++|+++++
T Consensus 248 v~v~~~PiGID~~~f~~~~~~-----------~~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L 311 (487)
T TIGR02398 248 VKLGAHPVGTDPERIRSALAA-----------ASIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLL 311 (487)
T ss_pred EEEEEEECEecHHHHHHHhcC-----------chHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHH
Confidence 458999999999888653210 001123456788776 2478999999999999999999999987
Q ss_pred h--c----CcEEEEEecCCC------hhHHHHHHHHHHHhCC--------CcEEEEEecChHHHHHHHhcCCEEEECCCC
Q 009217 382 M--R----GIQFVFTGTNKL------PSASRALVSFQEELKD--------GIVIFVDSYDDALLHLIFSGSDIILCHSFH 441 (540)
Q Consensus 382 ~--~----~~~lvi~G~g~~------~~~~~~l~~l~~~~~~--------~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~ 441 (540)
+ + ++.|+++|.+.. ..+.+++++++.+.+. .-+.|.+.++.+++..+|+.||+++++|..
T Consensus 312 ~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lr 391 (487)
T TIGR02398 312 ERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLR 391 (487)
T ss_pred HhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccc
Confidence 5 2 478998885421 2356677777777631 224566677889999999999999999999
Q ss_pred CCCchHHHHHHhcCC----ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHH-HHHHHHHHH
Q 009217 442 DPLLQVPLKALKYGA----APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS-WKRKIKDAM 516 (540)
Q Consensus 442 E~fglv~lEAma~G~----pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~-~~~~~~~a~ 516 (540)
||++||..|+|+|+. |+|.|.. +|..+... + +++++|.|++++++||.+.++.|.. +++..+.-+
T Consensus 392 DGmNLVa~Eyva~~~~~~GvLILSef--aGaa~~l~-----~---AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~ 461 (487)
T TIGR02398 392 DGLNLVAKEYVAAQGLLDGVLVLSEF--AGAAVELK-----G---ALLTNPYDPVRMDETIYVALAMPKAEQQARMREMF 461 (487)
T ss_pred cccCcchhhHHhhhcCCCCCEEEecc--ccchhhcC-----C---CEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999988 9999999 78776553 2 4899999999999999999986542 222222222
Q ss_pred h--ccCChHHHHHH
Q 009217 517 L--QDFSWDADCND 528 (540)
Q Consensus 517 ~--~~fsw~~~a~~ 528 (540)
+ ..++-..-++.
T Consensus 462 ~~v~~~d~~~W~~~ 475 (487)
T TIGR02398 462 DAVNYYDVQRWADE 475 (487)
T ss_pred HHHhhCCHHHHHHH
Confidence 2 55565555555
No 89
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.82 E-value=4.4e-18 Score=174.88 Aligned_cols=272 Identities=11% Similarity=0.101 Sum_probs=172.6
Q ss_pred HHHHHHHHHcCCCCCEEEEcCC-chhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 173 RASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~pDIIH~h~~-~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
....+.+++ .+||+||+|.. ...+.+.++.. ..++|++++.|+.... .. +. +
T Consensus 78 ~~l~~~l~~--~~pDvV~~~g~~~~~~~~~~aa~------~~~iPvv~~~~g~~s~---~~------~~-------~--- 130 (363)
T cd03786 78 IGLEAVLLE--EKPDLVLVLGDTNETLAAALAAF------KLGIPVAHVEAGLRSF---DR------GM-------P--- 130 (363)
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH------HcCCCEEEEecccccC---CC------CC-------C---
Confidence 344444443 58999999974 33343333322 2689998776642110 00 00 0
Q ss_pred cCCCCCccchhhh-HHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCC-CCCCCCCCCCcccccccC
Q 009217 252 QDNTKTHLVNILK-GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGF-DSSTWDPSNDKFLTENYC 329 (540)
Q Consensus 252 ~~~~~~~~~~~~~-~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGv-d~~~~~p~~~~~l~~~~~ 329 (540)
....+ ...+.+|.++++|+..++.+... | + +++++.+++|++ |...+.+...
T Consensus 131 --------~~~~r~~~~~~ad~~~~~s~~~~~~l~~~--G--~------~~~kI~vign~v~d~~~~~~~~~-------- 184 (363)
T cd03786 131 --------DEENRHAIDKLSDLHFAPTEEARRNLLQE--G--E------PPERIFVVGNTMIDALLRLLELA-------- 184 (363)
T ss_pred --------chHHHHHHHHHhhhccCCCHHHHHHHHHc--C--C------CcccEEEECchHHHHHHHHHHhh--------
Confidence 01111 23457899999999887766532 2 2 578999999995 5332221100
Q ss_pred cccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccc---cCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHH
Q 009217 330 AEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVS---DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQ 406 (540)
Q Consensus 330 ~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~---~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~ 406 (540)
.....++.++++. +..++++.||... .||++.+++|+..+.+.++++++.|.+ ...+.+++..
T Consensus 185 ---------~~~~~~~~~~~~~--~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~---~~~~~l~~~~ 250 (363)
T cd03786 185 ---------KKELILELLGLLP--KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP---RTRPRIREAG 250 (363)
T ss_pred ---------ccchhhhhcccCC--CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC---ChHHHHHHHH
Confidence 0111234566653 3356778898775 799999999999886545666666633 2456677766
Q ss_pred HHhC--CCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCcccccee
Q 009217 407 EELK--DGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRF 484 (540)
Q Consensus 407 ~~~~--~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~ 484 (540)
.+++ .++|+|++....+.+..+|++||++|.||- | ++.|||++|+|+|+++. .+..+|.++ +|.+ .
T Consensus 251 ~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~-~~~~~~~~~-----~g~~-~ 318 (363)
T cd03786 251 LEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRD-RTERPETVE-----SGTN-V 318 (363)
T ss_pred HhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCC-CCccchhhh-----eeeE-E
Confidence 6664 268988876666778899999999999995 4 47999999999999864 233455554 3432 2
Q ss_pred ecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHHH
Q 009217 485 ISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCND 528 (540)
Q Consensus 485 l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~ 528 (540)
.+ ..++++++++|..+++++..+.+|. ...|.-...+++
T Consensus 319 ~~-~~~~~~i~~~i~~ll~~~~~~~~~~----~~~~~~~~a~~~ 357 (363)
T cd03786 319 LV-GTDPEAILAAIEKLLSDEFAYSLMS----INPYGDGNASER 357 (363)
T ss_pred ec-CCCHHHHHHHHHHHhcCchhhhcCC----CCCCCCCHHHHH
Confidence 32 2368899999999999998887775 244444444444
No 90
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.79 E-value=5.3e-18 Score=174.68 Aligned_cols=422 Identities=14% Similarity=0.155 Sum_probs=213.6
Q ss_pred ccccHHHHHhHHHHHHHH-cCCeEEEEeecCCCCccccccCcceeeeeeeeecC-CeeeeeEEEEE--EEcCeeEEEE-c
Q 009217 71 SIGSLASYVTGLSGALQR-KGHLVEVILPKYACMNLDGVQGLREIKAECYSYFN-GQLHANKIWIG--VVSGIGVTFI-Q 145 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~--~~~gv~v~~i-~ 145 (540)
++||+-+++..=|+.+++ .|-+..+|.|..+.....+++.+..-...+..... -+....++..+ .++|.|.+.+ +
T Consensus 9 KVGGIYTVi~tKA~~~~~e~gd~y~lIGP~~~~~~~~e~e~~e~~~~~l~~~~~~~~~~Gl~v~~GRWlI~G~P~vIL~D 88 (633)
T PF05693_consen 9 KVGGIYTVISTKAPTMVEEFGDNYILIGPYNEQNARTEVEEIEPDNPLLKDALESMREEGLKVRYGRWLIPGRPIVILFD 88 (633)
T ss_dssp -SSSHHHHHHHHHHHHHHHHGGGEEEEEE--TTTHHHHEEE--SSSGGHHHHHHHHHHTT-EEEEEEESSTT--EEEEEE
T ss_pred ccCCeehhhhccHHHHHHHHCCeEEEECCCCCcccCCCCCcCCCCCHHHHHHHHHHHhCCCeEEEeceeECCcCeEEEEe
Confidence 689999999999988765 78899999997553211111100000000000000 00011222222 3568775544 4
Q ss_pred cCCCCCCCCC-CC-------------CCCCCC--hhHHHHHHHHHHHHHHHHc-CCCC-CEEEEcCCchhhHHHHHHHHH
Q 009217 146 PLHYSSFFNR-ES-------------VYGYSD--DFERFTYFSRASLDYIVKS-RKQP-DVLHIHNWETAIVGPLFWDIF 207 (540)
Q Consensus 146 ~~~~~~~~~~-~~-------------~y~~~~--~~~r~~~~~~~~~~~~~~~-~~~p-DIIH~h~~~~~~~~~~~~~~~ 207 (540)
- ..++.+ .. +.++.+ +...|.+....+++.+.+. ..++ =|.|+|.|++++..++++..
T Consensus 89 ~---~s~~~~ldeik~~lW~~~gIdS~~~~~dynea~~Fgyava~fi~~f~~~~~~~~~ViaHfHEWmaG~gll~lr~~- 164 (633)
T PF05693_consen 89 F---GSFFWKLDEIKGELWELFGIDSPHGDGDYNEAVMFGYAVAWFIEEFYKFYEEKPKVIAHFHEWMAGVGLLYLRKR- 164 (633)
T ss_dssp G---GGGGGGHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHHHHHHH-S-SEEEEEEEESGGGTTHHHHHHHT-
T ss_pred C---chHHHHHHHHHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCCCcEEEEechHhHhHHHHHHhcc-
Confidence 1 111111 00 111221 2334555555555555443 2234 45799999999876666542
Q ss_pred hhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCC---------CCccchhhhHHHhhccceeeccc
Q 009217 208 VKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNT---------KTHLVNILKGGVVYSNKVVIVSS 278 (540)
Q Consensus 208 ~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ad~vi~vS~ 278 (540)
...+.+|+|.|..-. | .. .|+-....+. .++.+. -.+...+++.+...||.++|||+
T Consensus 165 ----~~~VaTvFTTHAT~l-G----R~--l~~~~~~~Y~---~L~~~~~d~eA~~~~i~~k~~iEraaA~~AdvFTTVSe 230 (633)
T PF05693_consen 165 ----KPDVATVFTTHATLL-G----RY--LAANNKDFYN---NLDKFNGDQEAGERNIYHKHSIERAAAHYADVFTTVSE 230 (633)
T ss_dssp ----T-SCEEEEEESS-HH-H----HH--HTTTSS-TTT---SGTTS-HHHHHHHTT-HHHHHHHHHHHHHSSEEEESSH
T ss_pred ----CCCeeEEEEecccch-h----hH--hhcCCCcHHH---HhhccCccccccCccchHHHHHHHHHHHhcCeeeehhh
Confidence 368899999996321 0 00 1111100010 011110 01345688899999999999999
Q ss_pred cchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccC-cHHHHHHH----HHHh-CC-CC
Q 009217 279 MHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKG-KTVCKVTL----QQQL-GL-SK 351 (540)
Q Consensus 279 ~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~-k~~~~~~l----r~~~-gl-~~ 351 (540)
..+.|... +|. ..+=.|+|||+|.+.|.... +++. +...|+.+ +..+ |- ..
T Consensus 231 ITa~Ea~~---------LL~--r~pDvV~pNGl~v~~~~~~~-----------efqnl~~~~k~ki~~fv~~~f~g~~df 288 (633)
T PF05693_consen 231 ITAKEAEH---------LLK--RKPDVVTPNGLNVDKFPALH-----------EFQNLHAKAKEKIHEFVRGHFYGHYDF 288 (633)
T ss_dssp HHHHHHHH---------HHS--S--SEE----B-GGGTSSTT-----------HHHHHHHHHHHHHHHHHHHHSTT---S
T ss_pred hHHHHHHH---------HhC--CCCCEEcCCCccccccccch-----------HHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 98887643 221 23347899999987654321 1111 11233332 3332 21 11
Q ss_pred C-CCceEEEEEeccc-ccCCHHHHHHHHHHHHh------cC---cEEEEEecCC---Ch----------hHHH-------
Q 009217 352 D-ASTIVVGCIFSDV-SDVFLENLKAVVRGAKM------RG---IQFVFTGTNK---LP----------SASR------- 400 (540)
Q Consensus 352 ~-~~~~lv~~vgrl~-~~KG~~~Li~A~~~l~~------~~---~~lvi~G~g~---~~----------~~~~------- 400 (540)
+ ++..+|...||.. .+||+|.+|||+.+|.. .+ +-|+|+=..- .. .+.+
T Consensus 289 d~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~ 368 (633)
T PF05693_consen 289 DLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQE 368 (633)
T ss_dssp -GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 2456777889976 78999999999998853 13 3344432110 00 0000
Q ss_pred --------------------------------------------------------HHHHHHHHhC-----CCcEE--EE
Q 009217 401 --------------------------------------------------------ALVSFQEELK-----DGIVI--FV 417 (540)
Q Consensus 401 --------------------------------------------------------~l~~l~~~~~-----~~~v~--f~ 417 (540)
.+-...++++ .++|. |.
T Consensus 369 ~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~ 448 (633)
T PF05693_consen 369 KIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFH 448 (633)
T ss_dssp HHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE-
T ss_pred HHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEe
Confidence 0001111222 15554 44
Q ss_pred Eec-C------hHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC---CccccceeecC
Q 009217 418 DSY-D------DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH---ESTRFSRFISS 487 (540)
Q Consensus 418 ~~~-~------~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~---~~~g~~G~l~~ 487 (540)
+.| + .-...+++.+||+-|+||.|||+|.+.+|+.++|+|.|.|+. .|+...+.... ...|+ ++++
T Consensus 449 P~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnL--sGFG~~~~~~~~~~~~~GV--~Vvd 524 (633)
T PF05693_consen 449 PEYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNL--SGFGCWMQEHIEDPEEYGV--YVVD 524 (633)
T ss_dssp -S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETT--BHHHHHHHTTS-HHGGGTE--EEE-
T ss_pred eccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccc--hhHHHHHHHhhccCcCCcE--EEEe
Confidence 333 1 123467899999999999999999999999999999999999 88886665321 12343 4554
Q ss_pred CCC------HHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHH
Q 009217 488 TFG------NISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 488 ~~d------~~~la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l 537 (540)
..+ .++|++.|..+.. ++..+..+..++.+ +.++|+..... |.+.|+..
T Consensus 525 R~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~y-Y~~Ay~~A 582 (633)
T PF05693_consen 525 RRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKY-YEKAYDLA 582 (633)
T ss_dssp SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHH
Confidence 332 2567777777654 44445555555533 89999999988 79999864
No 91
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=1.5e-17 Score=167.49 Aligned_cols=222 Identities=20% Similarity=0.237 Sum_probs=167.7
Q ss_pred ccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCC
Q 009217 270 SNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGL 349 (540)
Q Consensus 270 ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl 349 (540)
.+.+++.|......... .. ...++.+++|+++.+.+.+. ..++
T Consensus 151 ~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~--------------------------~~~~ 193 (381)
T COG0438 151 ADRVIAVSPALKELLEA-LG----------VPNKIVVIPNGIDTEKFAPA--------------------------RIGL 193 (381)
T ss_pred ccEEEECCHHHHHHHHH-hC----------CCCCceEecCCcCHHHcCcc--------------------------ccCC
Confidence 56667777654332221 11 23478999999998766542 0111
Q ss_pred CCCCCceEEEEEecccccCCHHHHHHHHHHHHhc--CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHH
Q 009217 350 SKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLH 426 (540)
Q Consensus 350 ~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~--~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~ 426 (540)
..+.....++++||+.+.||++.+++++..+.+. +++++++|.++.. .+.+..+..++.. ++|.|.+..+.++..
T Consensus 194 ~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 271 (381)
T COG0438 194 LPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER--REELEKLAKKLGLEDNVKFLGYVPDEELA 271 (381)
T ss_pred CcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc--HHHHHHHHHHhCCCCcEEEecccCHHHHH
Confidence 1111126899999999999999999999998864 3899999977542 3445556666653 688888777756666
Q ss_pred HHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHH
Q 009217 427 LIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 427 ~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~ 506 (540)
.+++.||++++||.+|+||++++|||++|+|+|+++. +|..|++.+ +.+|+++++.+.+++++++..++++++
T Consensus 272 ~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~--~~~~e~~~~-----~~~g~~~~~~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 272 ELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDV--GGIPEVVED-----GETGLLVPPGDVEELADALEQLLEDPE 344 (381)
T ss_pred HHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCC--CChHHHhcC-----CCceEecCCCCHHHHHHHHHHHhcCHH
Confidence 7899999999999999999999999999999999998 888999874 224677777789999999999999987
Q ss_pred HHHHHHHHHHh---ccCChHHHHHHHHHHHHHHHh
Q 009217 507 SWKRKIKDAML---QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 507 ~~~~~~~~a~~---~~fsw~~~a~~~y~~lY~~l~ 538 (540)
.++.+...+++ ..|+|+.++.+ +.++|..+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 378 (381)
T COG0438 345 LREELGEAARERVEEEFSWERIAEQ-LLELYEELL 378 (381)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHH
Confidence 77777753322 68999999999 598988764
No 92
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.76 E-value=2.5e-16 Score=159.55 Aligned_cols=235 Identities=13% Similarity=0.074 Sum_probs=154.0
Q ss_pred CCC-CEEEEcCC--chh-hHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCcc
Q 009217 184 KQP-DVLHIHNW--ETA-IVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHL 259 (540)
Q Consensus 184 ~~p-DIIH~h~~--~~~-~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 259 (540)
.+| |+||+|.. .+. +...++... ++ .++|+|+++||+..... .. .. ..
T Consensus 62 ~~~~Dvv~~~~P~~~~~~~~~~~~~~~---k~-~~~k~i~~ihD~~~~~~-----------~~--------~~-----~~ 113 (333)
T PRK09814 62 LKPGDIVIFQFPTWNGFEFDRLFVDKL---KK-KQVKIIILIHDIEPLRF-----------DS--------NY-----YL 113 (333)
T ss_pred CCCCCEEEEECCCCchHHHHHHHHHHH---HH-cCCEEEEEECCcHHHhc-----------cc--------cc-----hh
Confidence 566 99999872 211 112222221 11 37999999998643210 00 00 00
Q ss_pred chhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHH
Q 009217 260 VNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVC 339 (540)
Q Consensus 260 ~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~ 339 (540)
..+.+..++.||.|+++|+.+++.+... | + ...++.+++|..+.....+.
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~l~~~--g--~------~~~~i~~~~~~~~~~~~~~~-------------------- 163 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDRLVEE--G--L------TTDKIIVQGIFDYLNDIELV-------------------- 163 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHHc--C--C------CcCceEeccccccccccccc--------------------
Confidence 2456677889999999999998877542 2 2 34577766655432110000
Q ss_pred HHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEe
Q 009217 340 KVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS 419 (540)
Q Consensus 340 ~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~ 419 (540)
. .....+.++|+|++.+..+ |.+ ...+++|+|+|+|+... .. .++|.|+|.
T Consensus 164 -----~-----~~~~~~~i~yaG~l~k~~~---l~~-----~~~~~~l~i~G~g~~~~----------~~-~~~V~f~G~ 214 (333)
T PRK09814 164 -----K-----TPSFQKKINFAGNLEKSPF---LKN-----WSQGIKLTVFGPNPEDL----------EN-SANISYKGW 214 (333)
T ss_pred -----c-----cccCCceEEEecChhhchH---HHh-----cCCCCeEEEECCCcccc----------cc-CCCeEEecC
Confidence 0 0012357999999995432 111 12578999999885311 12 279999999
Q ss_pred cChHHHHHHHhcCCEEEECCCC-----------CCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCC
Q 009217 420 YDDALLHLIFSGSDIILCHSFH-----------DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISST 488 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi~v~PS~~-----------E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~ 488 (540)
++.+++..+|+. |+.+++... -.+|--..|+||||+|||+++. |++.|+|.+ +.+|++++
T Consensus 215 ~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~--~~~~~~V~~-----~~~G~~v~- 285 (333)
T PRK09814 215 FDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSK--AAIADFIVE-----NGLGFVVD- 285 (333)
T ss_pred CCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCC--ccHHHHHHh-----CCceEEeC-
Confidence 999999999987 665554321 2456668899999999999988 999999984 44578987
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 009217 489 FGNISLSQALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 489 ~d~~~la~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
+.++++++|..+ +++.+++|++++++
T Consensus 286 -~~~el~~~l~~~--~~~~~~~m~~n~~~ 311 (333)
T PRK09814 286 -SLEELPEIIDNI--TEEEYQEMVENVKK 311 (333)
T ss_pred -CHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence 567899999986 45778889988864
No 93
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.76 E-value=2.8e-16 Score=173.26 Aligned_cols=304 Identities=11% Similarity=0.056 Sum_probs=198.2
Q ss_pred HHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhh-hhcCCCccccCCCcc
Q 009217 172 SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKL-ALCGLDPARLHRPDR 250 (540)
Q Consensus 172 ~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l-~~~g~~~~~~~~~~~ 250 (540)
.+...+.+.+.-..=|+|-+||+|-.++|.+++.. ..+.++-+.+|-. +|...+ .. +|+
T Consensus 218 N~~FA~~i~~~~~~gD~VWVHDYHL~LlP~~LR~~-----~p~~~IGfFlHiP-----FPs~Eifr~--LP~-------- 277 (934)
T PLN03064 218 NQMFADVVNEHYEEGDVVWCHDYHLMFLPKCLKEY-----NSNMKVGWFLHTP-----FPSSEIHRT--LPS-------- 277 (934)
T ss_pred HHHHHHHHHHhcCCCCEEEEecchhhHHHHHHHHh-----CCCCcEEEEecCC-----CCChHHHhh--CCc--------
Confidence 33344444433233489999999999999888763 4678999999953 222111 11 111
Q ss_pred ccCCCCCccchhhhHHHhhccceeeccccchhhhhhccc-CCCchHH-----hhhccCceEEeccCCCCCCCCCCCCccc
Q 009217 251 LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSL-SHGLEST-----LAIHQDKLLVAPCGFDSSTWDPSNDKFL 324 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~-~~gl~~~-----l~~~~~ki~vI~nGvd~~~~~p~~~~~l 324 (540)
..-+-.++-.||.|-+-+..|++.....-. -.|++.. ...+.-++.+.|-|||.+.|......
T Consensus 278 ---------r~elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~-- 346 (934)
T PLN03064 278 ---------RSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET-- 346 (934)
T ss_pred ---------HHHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC--
Confidence 122234566677777777766655432100 0011100 00122346788999998877543100
Q ss_pred ccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCc--EEEEE-------ecC
Q 009217 325 TENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGI--QFVFT-------GTN 393 (540)
Q Consensus 325 ~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~--~lvi~-------G~g 393 (540)
+ .-....+.++++++ +..+|++++|+++.||+...++|++++++ +++ +++++ +++
T Consensus 347 ------~---~v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v 412 (934)
T PLN03064 347 ------P---QVQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDV 412 (934)
T ss_pred ------h---hHHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCc
Confidence 0 00112345676664 24689999999999999999999999875 232 35555 323
Q ss_pred CC-hhHHHHHHHHHHHhCC--C-----cEEEEE-ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCC----ceEE
Q 009217 394 KL-PSASRALVSFQEELKD--G-----IVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA----APIA 460 (540)
Q Consensus 394 ~~-~~~~~~l~~l~~~~~~--~-----~v~f~~-~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~----pvI~ 460 (540)
++ ..+..++.+++.+.+. . -|+++. .++.+++..+|+.||+|++||..|+|+|+.+|+|+|+. ++|.
T Consensus 413 ~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLIL 492 (934)
T PLN03064 413 PEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLIL 492 (934)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEE
Confidence 21 1234456565555431 1 144433 36788889999999999999999999999999999944 4677
Q ss_pred EecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHHH
Q 009217 461 VTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDI 529 (540)
Q Consensus 461 ~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~ 529 (540)
|.. .|..+.+. .| +++++|.|.++++++|.+.++ +++.++++.++.++ ..+||..-++..
T Consensus 493 SEf--aGaa~~L~-----~~--AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~f 555 (934)
T PLN03064 493 SEF--AGAAQSLG-----AG--AILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETF 555 (934)
T ss_pred eCC--CchHHHhC-----Cc--eEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 888 77777663 12 589999999999999999988 78888777776665 789999988874
No 94
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.68 E-value=2.9e-14 Score=135.71 Aligned_cols=227 Identities=12% Similarity=0.029 Sum_probs=164.2
Q ss_pred HHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHH
Q 009217 265 GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQ 344 (540)
Q Consensus 265 ~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr 344 (540)
.+-..||.|++.|....+++.. ++. ..+.++|+...+++. +.
T Consensus 218 ~~G~~ad~vm~NssWT~nHI~q---------iW~--~~~~~iVyPPC~~e~---------------------------lk 259 (465)
T KOG1387|consen 218 SAGSKADIVMTNSSWTNNHIKQ---------IWQ--SNTCSIVYPPCSTED---------------------------LK 259 (465)
T ss_pred hccccceEEEecchhhHHHHHH---------Hhh--ccceeEEcCCCCHHH---------------------------HH
Confidence 3345789999999887776653 232 367888887777643 22
Q ss_pred HHhCCCCCCCceEEEEEecccccCCHH-HHHHHHHHHHh------cCcEEEEEecCCC---hhHHHHHHHHHHHhCC-Cc
Q 009217 345 QQLGLSKDASTIVVGCIFSDVSDVFLE-NLKAVVRGAKM------RGIQFVFTGTNKL---PSASRALVSFQEELKD-GI 413 (540)
Q Consensus 345 ~~~gl~~~~~~~lv~~vgrl~~~KG~~-~Li~A~~~l~~------~~~~lvi~G~g~~---~~~~~~l~~l~~~~~~-~~ 413 (540)
+..+- .+.+.+.++++|.+.|+|+.. +=++|+....+ .+++|+++|+-.. .+....++.++++++. ++
T Consensus 260 s~~~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~ 338 (465)
T KOG1387|consen 260 SKFGT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKH 338 (465)
T ss_pred HHhcc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccc
Confidence 33333 234568899999999999998 33445443332 3689999996432 2344567888888875 78
Q ss_pred EEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccc-cceeccCCccccceeecCCCCHH
Q 009217 414 VIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR-HFAEFDHESTRFSRFISSTFGNI 492 (540)
Q Consensus 414 v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~-e~v~~~~~~~g~~G~l~~~~d~~ 492 (540)
|.|....+-+.+-.++..|-+-|-.=+.|-||+.++|+||+|+.||+-+. ||.. |+|.+.. | .-+||+.++ .+
T Consensus 339 v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~S--gGP~lDIV~~~~-G-~~tGFla~t--~~ 412 (465)
T KOG1387|consen 339 VQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNS--GGPLLDIVTPWD-G-ETTGFLAPT--DE 412 (465)
T ss_pred eEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCC--CCCceeeeeccC-C-ccceeecCC--hH
Confidence 99988888888889999999999999999999999999999999999988 6644 7876431 1 135799843 35
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHH
Q 009217 493 SLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 493 ~la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l 537 (540)
+.+++|.++.. |++.+..++++|+. .+|+=.+..+. +.....++
T Consensus 413 EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd-~~~~i~kl 459 (465)
T KOG1387|consen 413 EYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKD-WENPICKL 459 (465)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHh-HhHHHHHh
Confidence 88999888765 77778888888875 77777666666 35554443
No 95
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.66 E-value=3.9e-14 Score=146.09 Aligned_cols=260 Identities=9% Similarity=-0.041 Sum_probs=154.6
Q ss_pred HHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccC
Q 009217 174 ASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQD 253 (540)
Q Consensus 174 ~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 253 (540)
.+.+.+++ .+||+|.+++. .++-..+++. .+..++|+++.+. . +. |.
T Consensus 80 ~~~~~l~~--~kPd~vi~~g~-~~~~~~~a~a----a~~~gip~v~~i~-P--------~~-------wa---------- 126 (385)
T TIGR00215 80 EVVQLAKQ--AKPDLLVGIDA-PDFNLTKELK----KKDPGIKIIYYIS-P--------QV-------WA---------- 126 (385)
T ss_pred HHHHHHHh--cCCCEEEEeCC-CCccHHHHHH----HhhCCCCEEEEeC-C--------cH-------hh----------
Confidence 34444443 78999999995 3322122211 1236899986542 0 00 00
Q ss_pred CCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccc
Q 009217 254 NTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDM 333 (540)
Q Consensus 254 ~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~ 333 (540)
|. .+..+...+++|.|+++++...+.... ...+..++.|++..+.....
T Consensus 127 w~----~~~~r~l~~~~d~v~~~~~~e~~~~~~-------------~g~~~~~vGnPv~~~~~~~~-------------- 175 (385)
T TIGR00215 127 WR----KWRAKKIEKATDFLLAILPFEKAFYQK-------------KNVPCRFVGHPLLDAIPLYK-------------- 175 (385)
T ss_pred cC----cchHHHHHHHHhHhhccCCCcHHHHHh-------------cCCCEEEECCchhhhccccC--------------
Confidence 00 112344567899999999876554321 12356677788743211100
Q ss_pred cCcHHHHHHHHHHhCCCCCCCceEEEEE--ecccc-cCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHH
Q 009217 334 KGKTVCKVTLQQQLGLSKDASTIVVGCI--FSDVS-DVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEE 408 (540)
Q Consensus 334 ~~k~~~~~~lr~~~gl~~~~~~~lv~~v--grl~~-~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~ 408 (540)
..+...|+++|++.+ .++++++ +|..+ .|++..+++|++.+.+ ++.++++.+... ...+.++++.+.
T Consensus 176 ----~~~~~~r~~lgl~~~--~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~--~~~~~~~~~~~~ 247 (385)
T TIGR00215 176 ----PDRKSAREKLGIDHN--GETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF--KRRLQFEQIKAE 247 (385)
T ss_pred ----CCHHHHHHHcCCCCC--CCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc--hhHHHHHHHHHH
Confidence 024456778888654 3455444 37776 7899999999998875 367887765221 134455665555
Q ss_pred hCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc-----C------
Q 009217 409 LKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD-----H------ 476 (540)
Q Consensus 409 ~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~-----~------ 476 (540)
++. .+|.++.. + ...+|++||++|++| |.+.+|||++|+|+|++.- ++-++-.+... .
T Consensus 248 ~~~~~~v~~~~~---~-~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk-~~pl~~~~~~~~~~~~~~~~~ni 317 (385)
T TIGR00215 248 YGPDLQLHLIDG---D-ARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYR-MKPLTFLIARRLVKTDYISLPNI 317 (385)
T ss_pred hCCCCcEEEECc---h-HHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEc-CCHHHHHHHHHHHcCCeeeccHH
Confidence 532 45655422 2 346899999999999 7888899999999998732 12222111100 0
Q ss_pred -Ccccc-ceeecCCCCHHHHHHHHHHHhcCH----HHHHHHHHHH
Q 009217 477 -ESTRF-SRFISSTFGNISLSQALEEIKNNP----LSWKRKIKDA 515 (540)
Q Consensus 477 -~~~g~-~G~l~~~~d~~~la~ai~~l~~~~----~~~~~~~~~a 515 (540)
.+.+. -=++-...+++.|++.+.++++|+ +.++++.+.-
T Consensus 318 l~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~ 362 (385)
T TIGR00215 318 LANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFF 362 (385)
T ss_pred hcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 00110 013334567889999999999999 8887776543
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.57 E-value=2.2e-14 Score=125.37 Aligned_cols=130 Identities=21% Similarity=0.189 Sum_probs=91.4
Q ss_pred ceEEEEEecccccCCHHHHHH-HHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhc
Q 009217 355 TIVVGCIFSDVSDVFLENLKA-VVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG 431 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~-A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~ 431 (540)
.+++++.|++.+.||++.+++ |++++.+ ++++|+|+|.+++ .++++ .. ++|+|++.+ + ++..+++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~-----~l~~~--~~--~~v~~~g~~-~-e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD-----ELKRL--RR--PNVRFHGFV-E-ELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS------HHCCH--HH--CTEEEE-S--H-HHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH-----HHHHh--cC--CCEEEcCCH-H-HHHHHHHh
Confidence 378999999999999999999 9998875 4899999997643 24444 22 599999887 4 57799999
Q ss_pred CCEEEECCC-CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 432 SDIILCHSF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
||+.++|+. .|+++..++|||++|+|+|+++. +..+++... +. |.++ ..++++++++|.++++|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~---~~~~~~~~~----~~-~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN---GAEGIVEED----GC-GVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH---HCHCHS-------SE-EEE--TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc---chhhheeec----CC-eEEE-CCCHHHHHHHHHHHhcC
Confidence 999999996 78999999999999999999986 345555431 22 3555 78999999999999865
No 97
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.55 E-value=1.6e-14 Score=129.38 Aligned_cols=160 Identities=21% Similarity=0.254 Sum_probs=86.3
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCCCCCC
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHYSSF 152 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~~~~ 152 (540)
||++.++.+|+++|.++||+|+|+++..+....+ ...+|++++.++...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~---- 49 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE---------------------------EEEDGVRVHRLPLPR---- 49 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S---------------------------EEETTEEEEEE--S-----
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc---------------------------cccCCceEEeccCCc----
Confidence 8999999999999999999999999876543211 024677877775211
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCCh
Q 009217 153 FNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHP 232 (540)
Q Consensus 153 ~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~ 232 (540)
...... ... +.....+++.....+|||||+|++.+++++.+++.. .++|+|+|+|+..+....
T Consensus 50 --~~~~~~---~~~----~~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~------~~~p~v~~~h~~~~~~~~-- 112 (160)
T PF13579_consen 50 --RPWPLR---LLR----FLRRLRRLLAARRERPDVVHAHSPTAGLVAALARRR------RGIPLVVTVHGTLFRRGS-- 112 (160)
T ss_dssp --SSSGGG---HCC----HHHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHH------HT--EEEE-SS-T-------
T ss_pred --cchhhh---hHH----HHHHHHHHHhhhccCCeEEEecccchhHHHHHHHHc------cCCcEEEEECCCchhhcc--
Confidence 000010 111 112333333334579999999997666665555421 589999999975322110
Q ss_pred hhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC
Q 009217 233 DKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG 310 (540)
Q Consensus 233 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG 310 (540)
+.... -...+.+..++.||.++++|+..++.+.. .| .+++|+.|||||
T Consensus 113 ------~~~~~--------------~~~~~~~~~~~~ad~vi~~S~~~~~~l~~--~g--------~~~~ri~vipnG 160 (160)
T PF13579_consen 113 ------RWKRR--------------LYRWLERRLLRRADRVIVVSEAMRRYLRR--YG--------VPPDRIHVIPNG 160 (160)
T ss_dssp -------HHHH--------------HHHHHHHHHHHH-SEEEESSHHHHHHHHH--H-----------GGGEEE----
T ss_pred ------chhhH--------------HHHHHHHHHHhcCCEEEECCHHHHHHHHH--hC--------CCCCcEEEeCcC
Confidence 00000 01234567789999999999999887765 22 257899999998
No 98
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.53 E-value=7.2e-14 Score=127.39 Aligned_cols=177 Identities=22% Similarity=0.249 Sum_probs=91.2
Q ss_pred EEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcC
Q 009217 59 IIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSG 138 (540)
Q Consensus 59 Il~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g 138 (540)
|++ +..+.| ..||+++++.+|+++|+++||+|+|+++......... .
T Consensus 1 ili-~~~~~~--~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---~--------------------------- 47 (177)
T PF13439_consen 1 ILI-TNIFLP--NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---L--------------------------- 47 (177)
T ss_dssp -EE-ECC-TT--SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---E---------------------------
T ss_pred CEE-EEecCC--CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---c---------------------------
Confidence 344 444566 4799999999999999999999999998765432110 0
Q ss_pred eeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceE
Q 009217 139 IGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRIL 218 (540)
Q Consensus 139 v~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V 218 (540)
...... . .+.......+.......+.+.+++ .+|||||+|.+.....+... . .++|+|
T Consensus 48 --~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~i~~--~~~DiVh~~~~~~~~~~~~~-~-------~~~~~v 105 (177)
T PF13439_consen 48 --VKIFVK-----I-----PYPIRKRFLRSFFFMRRLRRLIKK--EKPDIVHIHGPPAFWIALLA-C-------RKVPIV 105 (177)
T ss_dssp --EEE--------T-----T-SSTSS--HHHHHHHHHHHHHHH--HT-SEEECCTTHCCCHHHHH-H-------HCSCEE
T ss_pred --cceeee-----e-----ecccccccchhHHHHHHHHHHHHH--cCCCeEEecccchhHHHHHh-c-------cCCCEE
Confidence 000000 0 000011111222333455556655 48999999986554443222 2 278999
Q ss_pred EEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhh
Q 009217 219 LSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLA 298 (540)
Q Consensus 219 ~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~ 298 (540)
+|+|+.... .. ........ ... -...+++...+.+|.++++|+..++++.. +|
T Consensus 106 ~~~H~~~~~----~~---~~~~~~~~------~~~----~~~~~~~~~~~~~~~ii~vS~~~~~~l~~--~~-------- 158 (177)
T PF13439_consen 106 YTIHGPYFE----RR---FLKSKLSP------YSY----LNFRIERKLYKKADRIIAVSESTKDELIK--FG-------- 158 (177)
T ss_dssp EEE-HHH------HH---TTTTSCCC------HHH----HHHCTTHHHHCCSSEEEESSHHHHHHHHH--HT--------
T ss_pred EEeCCCccc----cc---ccccccch------hhh----hhhhhhhhHHhcCCEEEEECHHHHHHHHH--hC--------
Confidence 999975321 00 00000000 000 00122334467899999999999888764 22
Q ss_pred hccCceEEeccCCCCCCCC
Q 009217 299 IHQDKLLVAPCGFDSSTWD 317 (540)
Q Consensus 299 ~~~~ki~vI~nGvd~~~~~ 317 (540)
.+++|+.|||||||++.|+
T Consensus 159 ~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 159 IPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp --SS-EEE----B-CCCH-
T ss_pred CcccCCEEEECCccHHHcC
Confidence 2578999999999998763
No 99
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.50 E-value=5.9e-13 Score=141.04 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=133.5
Q ss_pred eEEEEEe--cccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC--------------------
Q 009217 356 IVVGCIF--SDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD-------------------- 411 (540)
Q Consensus 356 ~lv~~vg--rl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-------------------- 411 (540)
..+++++ |+ ++|.++.+++|+..+.. ++++|.+.|.+.+....+.++++.++++.
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPI 398 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhc
Confidence 4567777 99 99999999999999865 68999999977532345566555444421
Q ss_pred ----------CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCcccc
Q 009217 412 ----------GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRF 481 (540)
Q Consensus 412 ----------~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~ 481 (540)
++|.|.+-.++..+...|..+.++|.+|..|+|+ +++||++.|+|+| + -|..+.|. +|.
T Consensus 399 ~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--n---yg~~~~V~-----d~~ 467 (519)
T TIGR03713 399 LQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--N---KVETDYVE-----HNK 467 (519)
T ss_pred ccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--e---cCCceeeE-----cCC
Confidence 4777776566656678999999999999999999 9999999999999 3 46688998 477
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHHHH
Q 009217 482 SRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISA 533 (540)
Q Consensus 482 ~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~l 533 (540)
||+++ +|..+|++||..++.+++.|+++...+.+ ++||-+++.++. .++
T Consensus 468 NG~li--~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW-~~~ 518 (519)
T TIGR03713 468 NGYII--DDISELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERL-NEL 518 (519)
T ss_pred CcEEe--CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH-Hhh
Confidence 78998 78889999999999999999999998876 899999999874 543
No 100
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.2e-10 Score=106.66 Aligned_cols=299 Identities=15% Similarity=0.122 Sum_probs=186.4
Q ss_pred CCCCCEEEEcCCc---hhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhh-cCCCccccCCCccccCCCCCc
Q 009217 183 RKQPDVLHIHNWE---TAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLAL-CGLDPARLHRPDRLQDNTKTH 258 (540)
Q Consensus 183 ~~~pDIIH~h~~~---~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~ 258 (540)
...||+|-+++.. +-++..++.. +.+.++++.+||+.|. . .+.. .|. ..-+- ++
T Consensus 101 ~~~~~~ilvQNPP~iPtliv~~~~~~------l~~~KfiIDWHNy~Ys-l----~l~~~~g~-~h~lV---~l------- 158 (444)
T KOG2941|consen 101 LRPPDIILVQNPPSIPTLIVCVLYSI------LTGAKFIIDWHNYGYS-L----QLKLKLGF-QHPLV---RL------- 158 (444)
T ss_pred ccCCcEEEEeCCCCCchHHHHHHHHH------HhcceEEEEehhhHHH-H----HHHhhcCC-CCchH---HH-------
Confidence 4689999999843 3333333322 4789999999998663 0 0111 111 00000 00
Q ss_pred cchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCC-----CCC----CCCCCCcccccccC
Q 009217 259 LVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFD-----SST----WDPSNDKFLTENYC 329 (540)
Q Consensus 259 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd-----~~~----~~p~~~~~l~~~~~ 329 (540)
...+++..-+.||.-.||++.+++++.. .||+ .+..|++.-.. ++. |.+-...+ ..|.
T Consensus 159 ~~~~E~~fgk~a~~nLcVT~AMr~dL~q---nWgi--------~ra~v~YDrPps~~~~l~~~H~lf~~l~~d~--~~f~ 225 (444)
T KOG2941|consen 159 VRWLEKYFGKLADYNLCVTKAMREDLIQ---NWGI--------NRAKVLYDRPPSKPTPLDEQHELFMKLAGDH--SPFR 225 (444)
T ss_pred HHHHHHHhhcccccchhhHHHHHHHHHH---hcCC--------ceeEEEecCCCCCCCchhHHHHHHhhhcccc--chhh
Confidence 0112333456788889999999888765 3443 23444442211 110 11110000 0112
Q ss_pred cccccCcHHHHHHHHHHhCC---CCC-CCceEEEEEecccccCCHHHHHHHHHHHH-----h----cCcEEEEEecCCCh
Q 009217 330 AEDMKGKTVCKVTLQQQLGL---SKD-ASTIVVGCIFSDVSDVFLENLKAVVRGAK-----M----RGIQFVFTGTNKLP 396 (540)
Q Consensus 330 ~~~~~~k~~~~~~lr~~~gl---~~~-~~~~lv~~vgrl~~~KG~~~Li~A~~~l~-----~----~~~~lvi~G~g~~~ 396 (540)
+-..+++..++.++-++..- ... ....+++....++|...+..|++|+...- + +..-++|.|.||
T Consensus 226 ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP-- 303 (444)
T KOG2941|consen 226 AREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP-- 303 (444)
T ss_pred hcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc--
Confidence 22234455555566555441 111 23356777788999999999999998432 1 235566667775
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHhcCCEEEEC--CC-CCCCchHHHHHHhcCCceEEEecCCCccccce
Q 009217 397 SASRALVSFQEELKDGIVIFVDS-YDDALLHLIFSGSDIILCH--SF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFA 472 (540)
Q Consensus 397 ~~~~~l~~l~~~~~~~~v~f~~~-~~~~~~~~~~~~aDi~v~P--S~-~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v 472 (540)
+.+...+..++++..+|.+... ...+..+.+++.||+-|+- |. -=-.|+-++.-.-||.||++.+. ..+.|+|
T Consensus 304 -lkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~f--kcl~ELV 380 (444)
T KOG2941|consen 304 -LKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNF--KCLDELV 380 (444)
T ss_pred -hhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecc--hhHHHHH
Confidence 4556666666665577876543 4667788999999998874 22 22346777888899999999999 7899999
Q ss_pred eccCCccccceeecCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHh-ccCChHHHHHH
Q 009217 473 EFDHESTRFSRFISSTFGNISLSQALEEIKN----NPLSWKRKIKDAML-QDFSWDADCND 528 (540)
Q Consensus 473 ~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~----~~~~~~~~~~~a~~-~~fsw~~~a~~ 528 (540)
+| |.||++|. |.++|++.+..+.+ +.+...++.+++++ +...|+.+=++
T Consensus 381 kh-----~eNGlvF~--Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~ 434 (444)
T KOG2941|consen 381 KH-----GENGLVFE--DSEELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDESWER 434 (444)
T ss_pred hc-----CCCceEec--cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHHHHH
Confidence 85 66778974 67899999999887 88889999999887 66777766555
No 101
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.28 E-value=4.4e-09 Score=107.19 Aligned_cols=334 Identities=13% Similarity=0.053 Sum_probs=168.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
||.++++.. .+||==.=...++++|.++||+|.+++..++. ..+. +. .
T Consensus 1 ~~~i~~~~G-----GTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~-e~~l---~~-----------------------~ 48 (352)
T PRK12446 1 MKKIVFTGG-----GSAGHVTPNLAIIPYLKEDNWDISYIGSHQGI-EKTI---IE-----------------------K 48 (352)
T ss_pred CCeEEEEcC-----CcHHHHHHHHHHHHHHHhCCCEEEEEECCCcc-cccc---Cc-----------------------c
Confidence 455555541 34554445567889999999999999855442 1110 00 1
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHH---HHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCC
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFS---RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~---~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~ 213 (540)
.|++++.++.. -+.+... ...+.....+. ..++.+++ ..+|||||++.-..++.+.++.. +.
T Consensus 49 ~g~~~~~~~~~----~l~~~~~---~~~~~~~~~~~~~~~~~~~i~~--~~kPdvvi~~Ggy~s~p~~~aa~------~~ 113 (352)
T PRK12446 49 ENIPYYSISSG----KLRRYFD---LKNIKDPFLVMKGVMDAYVRIR--KLKPDVIFSKGGFVSVPVVIGGW------LN 113 (352)
T ss_pred cCCcEEEEecc----CcCCCch---HHHHHHHHHHHHHHHHHHHHHH--hcCCCEEEecCchhhHHHHHHHH------Hc
Confidence 24555555321 1111100 01111111111 22333444 47999999987444332233322 47
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCc
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 293 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl 293 (540)
++|+++.-.|.. . | ...+...+.+|.|.+--+...+ .+
T Consensus 114 ~~p~~i~e~n~~-~-----------g---------------------~~nr~~~~~a~~v~~~f~~~~~-----~~---- 151 (352)
T PRK12446 114 RVPVLLHESDMT-P-----------G---------------------LANKIALRFASKIFVTFEEAAK-----HL---- 151 (352)
T ss_pred CCCEEEECCCCC-c-----------c---------------------HHHHHHHHhhCEEEEEccchhh-----hC----
Confidence 899877544321 0 1 1112345667777543221111 11
Q ss_pred hHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEE-ecccccCCH-H
Q 009217 294 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCI-FSDVSDVFL-E 371 (540)
Q Consensus 294 ~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~v-grl~~~KG~-~ 371 (540)
+.+++.+.-|.|..+...+ .+...++.++++.+ .++++.+ |...- +.+ +
T Consensus 152 ------~~~k~~~tG~Pvr~~~~~~--------------------~~~~~~~~~~l~~~--~~~iLv~GGS~Ga-~~in~ 202 (352)
T PRK12446 152 ------PKEKVIYTGSPVREEVLKG--------------------NREKGLAFLGFSRK--KPVITIMGGSLGA-KKINE 202 (352)
T ss_pred ------CCCCeEEECCcCCcccccc--------------------cchHHHHhcCCCCC--CcEEEEECCccch-HHHHH
Confidence 2467777777776543211 13345566777643 3445444 44332 333 2
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHH
Q 009217 372 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKA 451 (540)
Q Consensus 372 ~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEA 451 (540)
.+.+++..+. .+++++++- |.+ .+.+.+.. + +++..+ .|-.+.++.+|+.||++|.- +-+.+..|+
T Consensus 203 ~~~~~l~~l~-~~~~vv~~~-G~~-~~~~~~~~----~--~~~~~~-~f~~~~m~~~~~~adlvIsr----~G~~t~~E~ 268 (352)
T PRK12446 203 TVREALPELL-LKYQIVHLC-GKG-NLDDSLQN----K--EGYRQF-EYVHGELPDILAITDFVISR----AGSNAIFEF 268 (352)
T ss_pred HHHHHHHhhc-cCcEEEEEe-CCc-hHHHHHhh----c--CCcEEe-cchhhhHHHHHHhCCEEEEC----CChhHHHHH
Confidence 2333343332 357766643 332 22222221 2 233333 44434567899999999976 346899999
Q ss_pred HhcCCceEEEecCCCcc---ccceecc-CCccccceeec--CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHH
Q 009217 452 LKYGAAPIAVTSSDIEF---RHFAEFD-HESTRFSRFIS--STFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDAD 525 (540)
Q Consensus 452 ma~G~pvI~~~~~~gg~---~e~v~~~-~~~~g~~G~l~--~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~ 525 (540)
+++|+|.|..... ... .+..... -...|. +..+ +..+++.|.+++..+++|++.+++.. +++.....
T Consensus 269 ~~~g~P~I~iP~~-~~~~~~~Q~~Na~~l~~~g~-~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~-----~~~~~~~a 341 (352)
T PRK12446 269 LTLQKPMLLIPLS-KFASRGDQILNAESFERQGY-ASVLYEEDVTVNSLIKHVEELSHNNEKYKTAL-----KKYNGKEA 341 (352)
T ss_pred HHcCCCEEEEcCC-CCCCCchHHHHHHHHHHCCC-EEEcchhcCCHHHHHHHHHHHHcCHHHHHHHH-----HHcCCCCH
Confidence 9999999997441 011 1111100 000222 2333 23457899999999999987765322 23445555
Q ss_pred HHHH
Q 009217 526 CNDI 529 (540)
Q Consensus 526 a~~~ 529 (540)
++++
T Consensus 342 a~~i 345 (352)
T PRK12446 342 IQTI 345 (352)
T ss_pred HHHH
Confidence 5553
No 102
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.23 E-value=1.7e-09 Score=113.24 Aligned_cols=304 Identities=10% Similarity=0.064 Sum_probs=162.1
Q ss_pred HHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhh-hhcCCCccccCCCcc
Q 009217 172 SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKL-ALCGLDPARLHRPDR 250 (540)
Q Consensus 172 ~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l-~~~g~~~~~~~~~~~ 250 (540)
.+...+.+.+.-..-|+|-+||+|-.++|.+++.. ..+.++.+.+|.. +|...+ .. +|.
T Consensus 128 N~~FA~~i~~~~~~~D~VWVhDYhL~llP~~LR~~-----~~~~~IgfFlHiP-----FPs~e~fr~--lP~-------- 187 (474)
T PF00982_consen 128 NRRFADAIAEVYRPGDLVWVHDYHLMLLPQMLRER-----GPDARIGFFLHIP-----FPSSEIFRC--LPW-------- 187 (474)
T ss_dssp HHHHHHHHGGG--TT-EEEEESGGGTTHHHHHHHT-----T--SEEEEEE-S---------HHHHTT--STT--------
T ss_pred HHHHHHHHHHhCcCCCEEEEeCCcHHHHHHHHHhh-----cCCceEeeEEecC-----CCCHHHHhh--CCc--------
Confidence 44444444443345699999999999999988763 3678999999953 222211 11 111
Q ss_pred ccCCCCCccchhhhHHHhhccceeeccccchhhhhhc---ccCCCch-----HHhhhccCceEEeccCCCCCCCCCCCCc
Q 009217 251 LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLSHGLE-----STLAIHQDKLLVAPCGFDSSTWDPSNDK 322 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~~gl~-----~~l~~~~~ki~vI~nGvd~~~~~p~~~~ 322 (540)
..-+-.++-.||.|-.-+..+++..... ..|.... -.+..+.-++.+.|-|||.+.|....
T Consensus 188 ---------r~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~-- 256 (474)
T PF00982_consen 188 ---------REEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLA-- 256 (474)
T ss_dssp ---------HHHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHH--
T ss_pred ---------HHHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhc--
Confidence 1223345667888877777776554321 1110000 00111334577888888876553210
Q ss_pred ccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh------cCcEEEEEecCC--
Q 009217 323 FLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM------RGIQFVFTGTNK-- 394 (540)
Q Consensus 323 ~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~------~~~~lvi~G~g~-- 394 (540)
..+ .-......++++++- +..+++.+.|++..||+..=+.|++++++ .++.|+-++...
T Consensus 257 ------~~~---~v~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~ 323 (474)
T PF00982_consen 257 ------RSP---EVQERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSRE 323 (474)
T ss_dssp ------H-S------HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-ST
T ss_pred ------cCh---HHHHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCc
Confidence 000 001123456666642 24789999999999999999999999985 246666555321
Q ss_pred -Ch---hHHHHHHHHHHHh----CCC---cEEEEE-ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCc----e
Q 009217 395 -LP---SASRALVSFQEEL----KDG---IVIFVD-SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA----P 458 (540)
Q Consensus 395 -~~---~~~~~l~~l~~~~----~~~---~v~f~~-~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~p----v 458 (540)
.+ .+.+++++++.+. +.. -|.++. .++.+++..+|+.||+++++|..+|+-|+..|..+|-.. +
T Consensus 324 ~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvL 403 (474)
T PF00982_consen 324 DVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVL 403 (474)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EE
T ss_pred cchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCce
Confidence 12 2445566665544 321 255554 478888899999999999999999999999999988654 6
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHh--ccCChHHHHHH
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN-PLSWKRKIKDAML--QDFSWDADCND 528 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~-~~~~~~~~~~a~~--~~fsw~~~a~~ 528 (540)
|.|.. .|..+... +| .++++|.|.+++|+||.+.++= ++.++...+..++ ..++-..-++.
T Consensus 404 iLSef--aGaa~~L~-----~~--al~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~ 467 (474)
T PF00982_consen 404 ILSEF--AGAAEQLS-----EA--ALLVNPWDIEEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAES 467 (474)
T ss_dssp EEETT--BGGGGT-T-----TS---EEE-TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHH
T ss_pred Eeecc--CCHHHHcC-----Cc--cEEECCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHH
Confidence 77776 66666654 22 2799999999999999998873 3333333322222 45555555554
No 103
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.22 E-value=5.7e-09 Score=107.97 Aligned_cols=299 Identities=12% Similarity=0.040 Sum_probs=186.4
Q ss_pred HHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhh-hhcCCCccccCCCcc
Q 009217 172 SRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKL-ALCGLDPARLHRPDR 250 (540)
Q Consensus 172 ~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l-~~~g~~~~~~~~~~~ 250 (540)
.+...+.+.+.-..-|+|-+||+|-.++|.+++.. ..+.++-+.+|-. +|...+ .. +|+
T Consensus 110 N~~FA~~v~~~~~~~D~VWVHDYhL~llp~~LR~~-----~~~~~IgFFlHiP-----FPs~eifr~--LP~-------- 169 (474)
T PRK10117 110 NALLADKLLPLLKDDDIIWIHDYHLLPFASELRKR-----GVNNRIGFFLHIP-----FPTPEIFNA--LPP-------- 169 (474)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccHhhHHHHHHHHh-----CCCCcEEEEEeCC-----CCChHHHhh--CCC--------
Confidence 34444444433234499999999999998888763 3678999999953 222211 11 111
Q ss_pred ccCCCCCccchhhhHHHhhccceeeccccchhhhhhc---ccCCCchH------HhhhccCceEEeccCCCCCCCCCCCC
Q 009217 251 LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLSHGLES------TLAIHQDKLLVAPCGFDSSTWDPSND 321 (540)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~~gl~~------~l~~~~~ki~vI~nGvd~~~~~p~~~ 321 (540)
..-+-.++-.+|.|-.-+..+++..... ..| ++. ....+.-++.+.|-|||.+.|.....
T Consensus 170 ---------r~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg--~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~ 238 (474)
T PRK10117 170 ---------HDELLEQLCDYDLLGFQTENDRLAFLDCLSNLTR--VTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAA 238 (474)
T ss_pred ---------hHHHHHHHHhCccceeCCHHHHHHHHHHHHHHcC--CcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhh
Confidence 1222345566777777666666543321 001 100 00012346788899999876643210
Q ss_pred cccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc------CcEEEEEecCC-
Q 009217 322 KFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNK- 394 (540)
Q Consensus 322 ~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~------~~~lvi~G~g~- 394 (540)
. ........+++.++ +..+++.+.|++.-||+..=++|++++++. ++.|+-+....
T Consensus 239 ~------------~~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR 301 (474)
T PRK10117 239 G------------PLPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSR 301 (474)
T ss_pred c------------hHHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCC
Confidence 0 00112334566654 246888999999999999999999998852 45566554221
Q ss_pred --Ch---hHHHHHHHHHHHhCC-----C--cEEEE-EecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCC-----
Q 009217 395 --LP---SASRALVSFQEELKD-----G--IVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA----- 456 (540)
Q Consensus 395 --~~---~~~~~l~~l~~~~~~-----~--~v~f~-~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~----- 456 (540)
.+ .+++++++++.+.+. + -|+++ ..++.+++..+|+.||++++.|..+|+-||..|..+|-.
T Consensus 302 ~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~G 381 (474)
T PRK10117 302 GDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPG 381 (474)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCc
Confidence 12 345667777766542 1 24433 345778888999999999999999999999999999854
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHh--ccCChHHHHHH
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP-LSWKRKIKDAML--QDFSWDADCND 528 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~-~~~~~~~~~a~~--~~fsw~~~a~~ 528 (540)
+.|.|.. -|..+... | .++++|.|.+++++||.+.++-| +.+++..+.-++ ..++-..-++.
T Consensus 382 vLILSef--AGaA~~L~------~--AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~ 446 (474)
T PRK10117 382 VLVLSQF--AGAANELT------S--ALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQEC 446 (474)
T ss_pred cEEEecc--cchHHHhC------C--CeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHH
Confidence 3777777 55565553 2 28999999999999999988743 333333222222 55565555555
No 104
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=3e-09 Score=113.76 Aligned_cols=419 Identities=15% Similarity=0.110 Sum_probs=247.8
Q ss_pred EEEEEecc-----ccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCcc--ccccC---------------c---ce
Q 009217 59 IIHICTEM-----DPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNL--DGVQG---------------L---RE 113 (540)
Q Consensus 59 Il~i~~e~-----~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~--~~~~~---------------l---~~ 113 (540)
+.+.+.|+ -|... ||+|+......+.++..|.-.+.+.-.|...-- ....+ . +.
T Consensus 97 ~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~ 175 (750)
T COG0058 97 LGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRD 175 (750)
T ss_pred hhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecc
Confidence 44445443 35545 999999999999999999988888765543110 00000 0 10
Q ss_pred ---eeeeeeeecCC-eeeeeEEEEEEEcCeeEEEEccCCCC-CCCCC---CCCCCCCCh--hHHH---HHHHHHHHHHHH
Q 009217 114 ---IKAECYSYFNG-QLHANKIWIGVVSGIGVTFIQPLHYS-SFFNR---ESVYGYSDD--FERF---TYFSRASLDYIV 180 (540)
Q Consensus 114 ---~~~~~~~~~~~-~~~~~~~~~~~~~gv~v~~i~~~~~~-~~~~~---~~~y~~~~~--~~r~---~~~~~~~~~~~~ 180 (540)
..-+..+...+ ..-..++|...+.-+++++.+..... ....+ ..+| +++ ..|+ .++..+.++.+.
T Consensus 176 ~~a~~~d~~V~g~~~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LY--p~Ds~elRl~Qeyfl~~agvq~I~ 253 (750)
T COG0058 176 AEGVPYDVPVPGYDNRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLY--PGDSKELRLKQEYFLGSAGVQDIL 253 (750)
T ss_pred cCCceeeeeEEeccCcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcC--CCCcHHHHHhhhheeeeHHHHHHH
Confidence 11122233333 55667888887777788887632110 00011 1234 433 3443 455666666666
Q ss_pred HcC------CCCCEEEEcCCchhhHHH-HHHHHHhhcC--------CCCCceEEEecCCCCCC--CCChhhhhhc-C---
Q 009217 181 KSR------KQPDVLHIHNWETAIVGP-LFWDIFVKQG--------LEGTRILLSCHNLNSLC--LEHPDKLALC-G--- 239 (540)
Q Consensus 181 ~~~------~~pDIIH~h~~~~~~~~~-~~~~~~~~~~--------~~~~p~V~T~H~~~~~~--~~~~~~l~~~-g--- 239 (540)
+.. .++-+-|.++-|++++.+ +++......+ ....-+++|.|+.-..+ .+|.+.+... +
T Consensus 254 ~~~~~~~~~~~~~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~ 333 (750)
T COG0058 254 ARGHLEHHDLDVLADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHL 333 (750)
T ss_pred HHhhhccccccchhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhh
Confidence 543 566778888877776644 3331111111 13456899999865433 3444333211 0
Q ss_pred -CCc---------cccCCCcc-ccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEec
Q 009217 240 -LDP---------ARLHRPDR-LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAP 308 (540)
Q Consensus 240 -~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~ 308 (540)
... .....+.. ...-....-+++--.+++.|..|..||.-+.+-+....+. ......+.||.-+.
T Consensus 334 ~ii~~in~~~l~~~~~~~~~~~~~~~~~i~~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~----~~~~~~p~~i~nvT 409 (750)
T COG0058 334 QIIYEINARFLPEVRLLYLGDLIRRGSPIEEVNMAVLALVGSHSVNGVSKLHSELSKKMWFA----DFHGLYPEKINNVT 409 (750)
T ss_pred hhHHHHHhhhhHHHHhhccccccccCCcccceehhhhhhhhhhhhHhHHHHHHHHHHHHHHH----HhcccCcccccccc
Confidence 000 00000000 0000000015666678888999999998776543322111 01112378999999
Q ss_pred cCCCCCCCCCCCCcccccccCccc--------------------------cc-CcHHHHHH----HHHHhCCCCCCCceE
Q 009217 309 CGFDSSTWDPSNDKFLTENYCAED--------------------------MK-GKTVCKVT----LQQQLGLSKDASTIV 357 (540)
Q Consensus 309 nGvd~~~~~p~~~~~l~~~~~~~~--------------------------~~-~k~~~~~~----lr~~~gl~~~~~~~l 357 (540)
|||....|--...+.|...++... +. -|..+|.. ...+.|+..+++.+.
T Consensus 410 NGIt~rrWl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lf 489 (750)
T COG0058 410 NGITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALF 489 (750)
T ss_pred CCcCCchhhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCcce
Confidence 999998885332232322222110 00 12223322 223567777778899
Q ss_pred EEEEecccccCCHHHHHHHHHHHHh-------cCcEEEEEecCCChh------HHHHHHHHHHHhCC-CcEEEEEecChH
Q 009217 358 VGCIFSDVSDVFLENLKAVVRGAKM-------RGIQFVFTGTNKLPS------ASRALVSFQEELKD-GIVIFVDSYDDA 423 (540)
Q Consensus 358 v~~vgrl~~~KG~~~Li~A~~~l~~-------~~~~lvi~G~g~~~~------~~~~l~~l~~~~~~-~~v~f~~~~~~~ 423 (540)
++++-|++.+|..++.+.-+..+.. +.+++++.|... |. +...+...++..+. .+|.|+..|+-.
T Consensus 490 d~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAh-P~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvs 568 (750)
T COG0058 490 DGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAH-PADYAAKEIIKLINDVADVINNKLKVVFLPNYDVS 568 (750)
T ss_pred eeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCC-CcchHHHHHHHHHHHHHHhhcccceEEEeCCCChh
Confidence 9999999999998886655554442 236677778542 32 22344555565443 579999999999
Q ss_pred HHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCC
Q 009217 424 LLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFG 490 (540)
Q Consensus 424 ~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d 490 (540)
....++.+||+-..-|. .|++|.+.|.||..|.+-|+|-. |...|+.++. .|.|||+|....
T Consensus 569 lA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlD--GanvEi~e~v---g~~N~~~fG~~~ 632 (750)
T COG0058 569 LAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLD--GANVEIYEHV---GGENGWIFGETV 632 (750)
T ss_pred HHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccc--cHHHHHHHhc---CCCceEEeCCch
Confidence 98899999999999987 79999999999999999999988 9999998642 366778886543
No 105
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.21 E-value=4.2e-11 Score=97.14 Aligned_cols=87 Identities=22% Similarity=0.203 Sum_probs=77.3
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIK 513 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~ 513 (540)
|++.|+..+++++..+|+||||+|+|+.+. +++.+++.+ |.+++.++ +++++.+++..+++||+.++++++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~--~~~~~~~~~-----~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~ 71 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDS--PGLREIFED-----GEHIITYN--DPEELAEKIEYLLENPEERRRIAK 71 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECCh--HHHHHHcCC-----CCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHH
Confidence 467899999999999999999999999988 889998873 44567776 889999999999999999999999
Q ss_pred HHHh---ccCChHHHHHHH
Q 009217 514 DAML---QDFSWDADCNDI 529 (540)
Q Consensus 514 ~a~~---~~fsw~~~a~~~ 529 (540)
+|.+ ++|||+..++++
T Consensus 72 ~a~~~v~~~~t~~~~~~~i 90 (92)
T PF13524_consen 72 NARERVLKRHTWEHRAEQI 90 (92)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9976 799999999985
No 106
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=7.5e-08 Score=97.33 Aligned_cols=326 Identities=16% Similarity=0.108 Sum_probs=173.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCe-EEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHL-VEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGV 135 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~-V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 135 (540)
|+|++... .+||==.-...|+++|.++|++ |.++...+. .... +. .
T Consensus 1 ~~ivl~~g------GTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~-~e~~----l~----------------------~ 47 (357)
T COG0707 1 KKIVLTAG------GTGGHVFPALALAEELAKRGWEQVIVLGTGDG-LEAF----LV----------------------K 47 (357)
T ss_pred CeEEEEeC------CCccchhHHHHHHHHHHhhCccEEEEeccccc-ceee----ec----------------------c
Confidence 45665543 4688778888999999999996 544432222 1110 00 0
Q ss_pred EcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCC
Q 009217 136 VSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGT 215 (540)
Q Consensus 136 ~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (540)
..+++++.|+.. .+.+...+.......++......+.+.+++ .+||+|-.-....+.-+.++.. +.++
T Consensus 48 ~~~~~~~~I~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~il~~--~kPd~vig~Ggyvs~P~~~Aa~------~~~i 115 (357)
T COG0707 48 QYGIEFELIPSG----GLRRKGSLKLLKAPFKLLKGVLQARKILKK--LKPDVVIGTGGYVSGPVGIAAK------LLGI 115 (357)
T ss_pred ccCceEEEEecc----cccccCcHHHHHHHHHHHHHHHHHHHHHHH--cCCCEEEecCCccccHHHHHHH------hCCC
Confidence 125666666532 122222221111122222223344445544 7999999865444333333322 4789
Q ss_pred ceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchH
Q 009217 216 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 295 (540)
Q Consensus 216 p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~ 295 (540)
|++....|... |+.+ +...+.|+.|.+- +.+ . ...
T Consensus 116 Pv~ihEqn~~~------------G~an---------------------k~~~~~a~~V~~~---f~~-~-~~~------- 150 (357)
T COG0707 116 PVIIHEQNAVP------------GLAN---------------------KILSKFAKKVASA---FPK-L-EAG------- 150 (357)
T ss_pred CEEEEecCCCc------------chhH---------------------HHhHHhhceeeec---ccc-c-ccc-------
Confidence 99987766421 1111 1223445555432 211 1 111
Q ss_pred HhhhccCceEEeccCCCCCCCC-CCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEe-cccccCCHHHH
Q 009217 296 TLAIHQDKLLVAPCGFDSSTWD-PSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIF-SDVSDVFLENL 373 (540)
Q Consensus 296 ~l~~~~~ki~vI~nGvd~~~~~-p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vg-rl~~~KG~~~L 373 (540)
.+++++.+.-|.|..+... |. ...+..... +.++++.+| ...-+ .+
T Consensus 151 ---~~~~~~~~tG~Pvr~~~~~~~~---------------------~~~~~~~~~----~~~~ilV~GGS~Ga~----~l 198 (357)
T COG0707 151 ---VKPENVVVTGIPVRPEFEELPA---------------------AEVRKDGRL----DKKTILVTGGSQGAK----AL 198 (357)
T ss_pred ---CCCCceEEecCcccHHhhccch---------------------hhhhhhccC----CCcEEEEECCcchhH----HH
Confidence 1356788888888765443 11 111111111 234555554 43333 34
Q ss_pred HHHHHHHHh---cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHH
Q 009217 374 KAVVRGAKM---RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLK 450 (540)
Q Consensus 374 i~A~~~l~~---~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lE 450 (540)
-+++..+.. .+++++... |.+ . .+.++..-.+++ . +.+. +|.++ +.++|++||++|+=+ =++++-|
T Consensus 199 n~~v~~~~~~l~~~~~v~~~~-G~~-~-~~~~~~~~~~~~-~-~~v~-~f~~d-m~~~~~~ADLvIsRa----Ga~Ti~E 267 (357)
T COG0707 199 NDLVPEALAKLANRIQVIHQT-GKN-D-LEELKSAYNELG-V-VRVL-PFIDD-MAALLAAADLVISRA----GALTIAE 267 (357)
T ss_pred HHHHHHHHHHhhhCeEEEEEc-Ccc-h-HHHHHHHHhhcC-c-EEEe-eHHhh-HHHHHHhccEEEeCC----cccHHHH
Confidence 444443332 257777766 543 2 233333223232 2 5544 45444 568999999999654 3689999
Q ss_pred HHhcCCceEEEecCCCcc-ccce-ecc-CCccccceeecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 009217 451 ALKYGAAPIAVTSSDIEF-RHFA-EFD-HESTRFSRFISSTFG--NISLSQALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 451 Ama~G~pvI~~~~~~gg~-~e~v-~~~-~~~~g~~G~l~~~~d--~~~la~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
..++|+|.|.-..+ .+. .+.. ... -+..|. +.+++..+ ++.|.+.|..++++|+..++|..++..
T Consensus 268 ~~a~g~P~IliP~p-~~~~~~Q~~NA~~l~~~ga-a~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~ 337 (357)
T COG0707 268 LLALGVPAILVPYP-PGADGHQEYNAKFLEKAGA-ALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKK 337 (357)
T ss_pred HHHhCCCEEEeCCC-CCccchHHHHHHHHHhCCC-EEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999997662 221 1111 000 001222 35555444 889999999999999999999988754
No 107
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.19 E-value=1.1e-08 Score=111.01 Aligned_cols=282 Identities=15% Similarity=0.145 Sum_probs=176.7
Q ss_pred CCCEEEEcCCchhhHHH-HHHHHHhhcC--------CCCCceEEEecCCCCCC--CCChhhhhhc---------------
Q 009217 185 QPDVLHIHNWETAIVGP-LFWDIFVKQG--------LEGTRILLSCHNLNSLC--LEHPDKLALC--------------- 238 (540)
Q Consensus 185 ~pDIIH~h~~~~~~~~~-~~~~~~~~~~--------~~~~p~V~T~H~~~~~~--~~~~~~l~~~--------------- 238 (540)
++.+||.++-|++++.+ +++......+ ..+.-+++|.|+.-..+ .+|.+.+...
T Consensus 300 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~In~~~ 379 (797)
T cd04300 300 DKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEINRRF 379 (797)
T ss_pred CceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHHHHHH
Confidence 78999999977766644 3332221111 13457999999865433 3343332211
Q ss_pred --------CCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC
Q 009217 239 --------GLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG 310 (540)
Q Consensus 239 --------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG 310 (540)
+.+...+.+....+. +....+++-..++..|..|..||.-+.+-++...+ ..+...-++|+.-+.||
T Consensus 380 ~~~~~~~~~~~~~~~~~l~ii~~-~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~----~df~~l~P~kf~n~TNG 454 (797)
T cd04300 380 LEEVRAKYPGDEDRIRRMSIIEE-GGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVF----KDFYELYPEKFNNKTNG 454 (797)
T ss_pred HHHHHHhcCCCHHHHHhhccccc-CCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhH----HHHHhhCCCccCCcCCC
Confidence 011111111111111 11235788888999999999999876553333211 11222346889999999
Q ss_pred CCCCCCCCCCCccccc---------------------ccCcc-----cc-cCcHHHHHH----HHHHhCCCCCCCceEEE
Q 009217 311 FDSSTWDPSNDKFLTE---------------------NYCAE-----DM-KGKTVCKVT----LQQQLGLSKDASTIVVG 359 (540)
Q Consensus 311 vd~~~~~p~~~~~l~~---------------------~~~~~-----~~-~~k~~~~~~----lr~~~gl~~~~~~~lv~ 359 (540)
|....|--..++.+.. .+..+ ++ +-|..+|.. ++++.|+..+++....+
T Consensus 455 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdv 534 (797)
T cd04300 455 ITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDV 534 (797)
T ss_pred CCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEE
Confidence 9998885211111111 01111 01 223444443 45577888888889999
Q ss_pred EEecccccCCHHH-HHHHHHHHH---hc------CcEEEEEecCCChhH--H----HHHHHHHHHhC-----CC--cEEE
Q 009217 360 CIFSDVSDVFLEN-LKAVVRGAK---MR------GIQFVFTGTNKLPSA--S----RALVSFQEELK-----DG--IVIF 416 (540)
Q Consensus 360 ~vgrl~~~KG~~~-Li~A~~~l~---~~------~~~lvi~G~g~~~~~--~----~~l~~l~~~~~-----~~--~v~f 416 (540)
++-|++.+|..++ ++..+.++. +. +.++++.|... |.+ . ..+..+++..+ .+ +|.|
T Consensus 535 q~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAa-P~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVF 613 (797)
T cd04300 535 QVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAA-PGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVF 613 (797)
T ss_pred EeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCC-CCcHHHHHHHHHHHHHHHHhccChhcCCceEEEE
Confidence 9999999999988 666655543 21 36788888542 322 2 23344444321 13 7999
Q ss_pred EEecChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCccccceec
Q 009217 417 VDSYDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF 474 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~ 474 (540)
+..|+-.....++.+||+...-|. .|++|..-|.+|.-|.+-+++-. |...|+.+.
T Consensus 614 lenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlD--GanvEi~e~ 671 (797)
T cd04300 614 LPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLD--GANVEIAEE 671 (797)
T ss_pred eCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeeccc--chhHHHHHH
Confidence 999999998999999999999997 79999999999999999999987 888888653
No 108
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=99.18 E-value=7.8e-10 Score=100.08 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=113.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
||.+|.+--.|- ..||-|+++.+|+..|+++||+|+|.|......... ...+
T Consensus 3 kIaIiGtrGIPa-~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~---------------------------~~y~ 54 (185)
T PF09314_consen 3 KIAIIGTRGIPA-RYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE---------------------------FEYN 54 (185)
T ss_pred eEEEEeCCCCCc-ccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC---------------------------cccC
Confidence 799999987884 689999999999999999999999999653321110 0256
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH---HHcCCCCCEEEEcCCc-hhhHHHHHHHHHhhcCCC
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYI---VKSRKQPDVLHIHNWE-TAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~---~~~~~~pDIIH~h~~~-~~~~~~~~~~~~~~~~~~ 213 (540)
|+++..++.. +.+ ....+.+...++...+ ++.+.+.||||++... ++++.++++.. +..
T Consensus 55 gv~l~~i~~~-------~~g------~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~----~~~ 117 (185)
T PF09314_consen 55 GVRLVYIPAP-------KNG------SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKL----RKK 117 (185)
T ss_pred CeEEEEeCCC-------CCC------chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhh----hhc
Confidence 8888777521 101 1122223233333333 3333568999999865 45554554331 114
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCc
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 293 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl 293 (540)
+.|+++++|+++.... ..+...+. | ..--++.++++||.+|+-|+...+.+... ++
T Consensus 118 g~~v~vN~DGlEWkR~-------KW~~~~k~---------~----lk~~E~~avk~ad~lIaDs~~I~~y~~~~-y~--- 173 (185)
T PF09314_consen 118 GGKVVVNMDGLEWKRA-------KWGRPAKK---------Y----LKFSEKLAVKYADRLIADSKGIQDYIKER-YG--- 173 (185)
T ss_pred CCcEEECCCcchhhhh-------hcCHHHHH---------H----HHHHHHHHHHhCCEEEEcCHHHHHHHHHH-cC---
Confidence 6799999998764321 01111110 0 12344567899999999999998877653 21
Q ss_pred hHHhhhccCceEEeccCCC
Q 009217 294 ESTLAIHQDKLLVAPCGFD 312 (540)
Q Consensus 294 ~~~l~~~~~ki~vI~nGvd 312 (540)
..+.++|++|.|
T Consensus 174 -------~~~s~~IaYGad 185 (185)
T PF09314_consen 174 -------RKKSTFIAYGAD 185 (185)
T ss_pred -------CCCcEEecCCCC
Confidence 368899999976
No 109
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.13 E-value=1.6e-08 Score=112.97 Aligned_cols=265 Identities=9% Similarity=0.026 Sum_probs=170.4
Q ss_pred CEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHH
Q 009217 187 DVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGG 266 (540)
Q Consensus 187 DIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (540)
|+|-+||+|-.++|.+++.. ..+.++.+.+|-. +|...+-. -+|+ ..-+-.+
T Consensus 203 d~VWVhDYhL~llP~~LR~~-----~~~~~IgfFlHiP-----FPs~eifr-~LP~-----------------r~eiL~g 254 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKR-----FNRVKLGFFLHSP-----FPSSEIYK-TLPI-----------------REELLRA 254 (854)
T ss_pred CEEEEeCchhhHHHHHHHhh-----CCCCcEEEEecCC-----CCChHHHh-hCCc-----------------HHHHHHH
Confidence 89999999999999888663 4778999999953 22221100 0111 1223345
Q ss_pred Hhhccceeeccccchhhhhhc---ccCCCchH---------HhhhccCceEEeccCCCCCCCCCCCCcccccccCccccc
Q 009217 267 VVYSNKVVIVSSMHSKGRIIR---SLSHGLES---------TLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMK 334 (540)
Q Consensus 267 ~~~ad~vi~vS~~~~~~~~~~---~~~~gl~~---------~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~ 334 (540)
+-.||.|-+-+..|++..... .. |++. .+..+.-++.+.|-|||.+.|..... . .
T Consensus 255 lL~aDlIGFht~~yar~Fl~~~~r~l--gl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~--------~---~ 321 (854)
T PLN02205 255 LLNSDLIGFHTFDYARHFLSCCSRML--GLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLS--------L---P 321 (854)
T ss_pred HhcCCeEEecCHHHHHHHHHHHHHHh--CCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhc--------C---h
Confidence 667788877777776654321 11 1110 00113345778889999876642210 0 0
Q ss_pred CcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc------CcEEEEEecC-----CC-hhHHHHH
Q 009217 335 GKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTN-----KL-PSASRAL 402 (540)
Q Consensus 335 ~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~------~~~lvi~G~g-----~~-~~~~~~l 402 (540)
......++++++++- ++..+++.+.|++.-||+..=+.|++++++. ++.|+-+... ++ ..+++++
T Consensus 322 ~~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev 398 (854)
T PLN02205 322 ETEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAET 398 (854)
T ss_pred hHHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHH
Confidence 011123456666642 1357899999999999999999999999862 3455555421 11 1344556
Q ss_pred HHHHHHhCC-------CcEEEE-EecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCC------------------
Q 009217 403 VSFQEELKD-------GIVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA------------------ 456 (540)
Q Consensus 403 ~~l~~~~~~-------~~v~f~-~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~------------------ 456 (540)
++++.+.+. .-|+++ ..++.+++..+|+.||++++.|..+|+-|+..|..+|-.
T Consensus 399 ~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~ 478 (854)
T PLN02205 399 HSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKK 478 (854)
T ss_pred HHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCC
Confidence 666665431 235555 346778888999999999999999999999999988743
Q ss_pred -ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 457 -APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 457 -pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
+.|.|.. -|...... | .++++|.|.+++++||.+.++-|
T Consensus 479 gvLiLSEf--aGaa~~L~------~--Ai~VNP~d~~~~a~ai~~AL~m~ 518 (854)
T PLN02205 479 SMLVVSEF--IGCSPSLS------G--AIRVNPWNIDAVADAMDSALEMA 518 (854)
T ss_pred CceEeeec--cchhHHhC------c--CeEECCCCHHHHHHHHHHHHcCC
Confidence 2555655 34343332 2 28999999999999999988743
No 110
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=99.11 E-value=1.7e-08 Score=109.08 Aligned_cols=281 Identities=16% Similarity=0.131 Sum_probs=173.7
Q ss_pred CCCEEEEcCCchhhHHH-HHHHHHhhcC--------CCCCceEEEecCCCCCC--CCChhhhhhcC---------CCc--
Q 009217 185 QPDVLHIHNWETAIVGP-LFWDIFVKQG--------LEGTRILLSCHNLNSLC--LEHPDKLALCG---------LDP-- 242 (540)
Q Consensus 185 ~pDIIH~h~~~~~~~~~-~~~~~~~~~~--------~~~~p~V~T~H~~~~~~--~~~~~~l~~~g---------~~~-- 242 (540)
++.+||+++-|++++.+ +++......+ ..+.-+++|.|+.-..+ .++...+...- +..
T Consensus 302 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~f 381 (798)
T PRK14985 302 DYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTRF 381 (798)
T ss_pred CCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 78899999977766543 4432221101 13457999999865433 33433222110 000
Q ss_pred -----cccCC----CccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCC
Q 009217 243 -----ARLHR----PDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDS 313 (540)
Q Consensus 243 -----~~~~~----~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~ 313 (540)
..+.. ..++.... ...+++-..++..|..|-.||.-+.+-+....+. .....-+.++.-|.|||..
T Consensus 382 l~~~~~~~~~d~~~~~~~sii~-~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~----df~~l~p~kf~nvTNGVt~ 456 (798)
T PRK14985 382 KTLVEKTWPGDKKVWAKLAVVH-DKQVRMANLCVVSGFAVNGVAALHSDLVVKDLFP----EYHQLWPNKFHNVTNGITP 456 (798)
T ss_pred HHHHHHhCCCcHHHhhhhhhcc-CCeeehHHHHHHhcchhHhhHHHHhchhHHhhhh----hhHhhCCCccCCcCCCcCc
Confidence 00000 00011111 1246777788888999999987665433332211 1111236788999999999
Q ss_pred CCCC----CCCCccccc-----------------ccCc-ccc-----cCcHHHHHH----HHHHhCCCCCCCceEEEEEe
Q 009217 314 STWD----PSNDKFLTE-----------------NYCA-EDM-----KGKTVCKVT----LQQQLGLSKDASTIVVGCIF 362 (540)
Q Consensus 314 ~~~~----p~~~~~l~~-----------------~~~~-~~~-----~~k~~~~~~----lr~~~gl~~~~~~~lv~~vg 362 (540)
..|- |.-...+.. .+.. +++ +-|..+|.. ++++.|+..+++....+++-
T Consensus 457 rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq~k 536 (798)
T PRK14985 457 RRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDVQIK 536 (798)
T ss_pred chhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchhhHh
Confidence 8883 432111111 1111 111 123333433 35677888788888899999
Q ss_pred cccccCCHHH-HHHHHHHHHh---------cCcEEEEEecCCChhH--H----HHHHHHHHHhC-----CC--cEEEEEe
Q 009217 363 SDVSDVFLEN-LKAVVRGAKM---------RGIQFVFTGTNKLPSA--S----RALVSFQEELK-----DG--IVIFVDS 419 (540)
Q Consensus 363 rl~~~KG~~~-Li~A~~~l~~---------~~~~lvi~G~g~~~~~--~----~~l~~l~~~~~-----~~--~v~f~~~ 419 (540)
|++.+|..++ ++..+.++.+ .+.++++.|... |.+ . +.+..+++..+ .+ +|.|+..
T Consensus 537 R~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAa-P~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFlen 615 (798)
T PRK14985 537 RLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAA-PGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFLPD 615 (798)
T ss_pred hhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCC-CCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEeCC
Confidence 9999999888 7777655542 137888888542 322 2 23444444332 13 7999999
Q ss_pred cChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCcccccee
Q 009217 420 YDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 473 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~ 473 (540)
|+-.....++.+||+...-|. .|++|..-|.+|..|.+-+.+-. |...|+.+
T Consensus 616 Y~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlD--GanvEi~e 669 (798)
T PRK14985 616 YCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLD--GANVEIAE 669 (798)
T ss_pred CChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeeccc--chHHHHHH
Confidence 999998999999999999987 79999999999999999999877 88888765
No 111
>PRK14986 glycogen phosphorylase; Provisional
Probab=99.10 E-value=3.1e-08 Score=107.44 Aligned_cols=218 Identities=19% Similarity=0.145 Sum_probs=146.8
Q ss_pred cchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCC----CCCCccccc----c---
Q 009217 259 LVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWD----PSNDKFLTE----N--- 327 (540)
Q Consensus 259 ~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~----p~~~~~l~~----~--- 327 (540)
.+++-..++..|..|..||.-+.+-+.+..+. ......++|+.-|.|||....|- |.-...+.. .
T Consensus 420 ~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~----df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~~W~~ 495 (815)
T PRK14986 420 RVRMAWLAVVVSHKVNGVSELHSNLMVQSLFA----DFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGRTWRT 495 (815)
T ss_pred EEeeHHHHhhccchhhHHHHHHHHHHHHHHHH----HHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCchhhh
Confidence 57788888999999999998765432222211 11112467888899999998885 321111110 0
Q ss_pred ----------cC-cccc-----cCcHHHHHH----HHHHhCCCCCCCceEEEEEecccccCCHHH-HHHHHHHHHh---c
Q 009217 328 ----------YC-AEDM-----KGKTVCKVT----LQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRGAKM---R 383 (540)
Q Consensus 328 ----------~~-~~~~-----~~k~~~~~~----lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~-Li~A~~~l~~---~ 383 (540)
+. .+++ +-|..+|.. ++++.|+..+++....+++-|++.+|..++ ++..+.++.+ .
T Consensus 496 d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~ 575 (815)
T PRK14986 496 DLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKAD 575 (815)
T ss_pred ChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhC
Confidence 00 1111 123334443 355778888888889999999999999988 7777655532 1
Q ss_pred ------CcEEEEEecCCChhH------HHHHHHHHHHhC-----CC--cEEEEEecChHHHHHHHhcCCEEEECCC--CC
Q 009217 384 ------GIQFVFTGTNKLPSA------SRALVSFQEELK-----DG--IVIFVDSYDDALLHLIFSGSDIILCHSF--HD 442 (540)
Q Consensus 384 ------~~~lvi~G~g~~~~~------~~~l~~l~~~~~-----~~--~v~f~~~~~~~~~~~~~~~aDi~v~PS~--~E 442 (540)
+.++++.|... |.+ -+.+..+++..+ .+ +|.|+..|+-+....++.+||+...-|. .|
T Consensus 576 p~~~~~P~~~IFaGKAa-P~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~E 654 (815)
T PRK14986 576 PDAKWVPRVNIFAGKAA-SAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTE 654 (815)
T ss_pred CCcCCCCeEEEEeecCC-CCcHHHHHHHHHHHHHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCcc
Confidence 47888888542 322 223334444211 13 7999999999999999999999999997 79
Q ss_pred CCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeec
Q 009217 443 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFIS 486 (540)
Q Consensus 443 ~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~ 486 (540)
++|...|.||.-|.+-+++-. |...|+.+.- -+.|||+|
T Consensus 655 ASGTsnMK~alNGaLtlgtlD--G~nvEi~e~v---G~eN~~~f 693 (815)
T PRK14986 655 ASGTSNMKFALNGALTIGTLD--GANVEMLEHV---GEENIFIF 693 (815)
T ss_pred ccCcchhhHHhcCceeeeccC--CchhHHHHhc---CCCcEEEe
Confidence 999999999999999999887 8888887531 13445555
No 112
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=99.10 E-value=1.3e-08 Score=109.97 Aligned_cols=283 Identities=17% Similarity=0.151 Sum_probs=175.6
Q ss_pred CCCEEEEcCCchhhHHH-HHHHHHhhcC--------CCCCceEEEecCCCCCC--CCChhhhhh---------cCCCccc
Q 009217 185 QPDVLHIHNWETAIVGP-LFWDIFVKQG--------LEGTRILLSCHNLNSLC--LEHPDKLAL---------CGLDPAR 244 (540)
Q Consensus 185 ~pDIIH~h~~~~~~~~~-~~~~~~~~~~--------~~~~p~V~T~H~~~~~~--~~~~~~l~~---------~g~~~~~ 244 (540)
++.+||.++-|++++.+ +++......+ ..+.-+++|.|+.-..+ .+|...+.. .+++...
T Consensus 297 ~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~f 376 (794)
T TIGR02093 297 KKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRRF 376 (794)
T ss_pred cceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHHH
Confidence 78999999977776644 3332221101 13457899999865433 334333221 0111110
Q ss_pred cC-----CC------ccccCCC--CCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCC
Q 009217 245 LH-----RP------DRLQDNT--KTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGF 311 (540)
Q Consensus 245 ~~-----~~------~~~~~~~--~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGv 311 (540)
+. .| .++.... ....+++-..++..|..|..||.-+.+-++...+. .+...-++|+.-+.|||
T Consensus 377 l~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~----df~~l~P~kf~n~TNGV 452 (794)
T TIGR02093 377 LAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLK----DFYELYPEKFNNKTNGI 452 (794)
T ss_pred HHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHH----HHHhhCCCccCCcCCCC
Confidence 00 00 0111111 12357888888999999999998766533322110 11222468889999999
Q ss_pred CCCCCCCCCCcccccc---------------------cCcc-----cc-cCcHHHHHH----HHHHhCCCCCCCceEEEE
Q 009217 312 DSSTWDPSNDKFLTEN---------------------YCAE-----DM-KGKTVCKVT----LQQQLGLSKDASTIVVGC 360 (540)
Q Consensus 312 d~~~~~p~~~~~l~~~---------------------~~~~-----~~-~~k~~~~~~----lr~~~gl~~~~~~~lv~~ 360 (540)
....|--..++.|..- +..+ ++ +-|..+|.. ++++.|+..+++....++
T Consensus 453 t~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slfdvq 532 (794)
T TIGR02093 453 TPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIFDVQ 532 (794)
T ss_pred CccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccchhh
Confidence 9988852212211110 1111 11 123334443 455778887778888899
Q ss_pred EecccccCCHHH-HHHHHHHHHh---c------CcEEEEEecCCChhH--H----HHHHHHHHHhC-----CC--cEEEE
Q 009217 361 IFSDVSDVFLEN-LKAVVRGAKM---R------GIQFVFTGTNKLPSA--S----RALVSFQEELK-----DG--IVIFV 417 (540)
Q Consensus 361 vgrl~~~KG~~~-Li~A~~~l~~---~------~~~lvi~G~g~~~~~--~----~~l~~l~~~~~-----~~--~v~f~ 417 (540)
+-|++.+|...+ ++..+.++.+ . +.++++.|... |.+ . ..+..+++..+ .+ +|.|+
T Consensus 533 ~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAa-P~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVVFl 611 (794)
T TIGR02093 533 VKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAA-PGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVVFV 611 (794)
T ss_pred heechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCC-CCcHHHHHHHHHHHHHHHHhccChhhCCceeEEEe
Confidence 999999999888 6666655442 2 45888888542 322 2 23334443321 13 79999
Q ss_pred EecChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCccccceec
Q 009217 418 DSYDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF 474 (540)
Q Consensus 418 ~~~~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~ 474 (540)
..|+-.....++.+||+...-|. .|++|..-|.+|..|.+-+++-. |...|+.+.
T Consensus 612 enY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlD--GanvEi~e~ 668 (794)
T TIGR02093 612 PNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLD--GANVEIREE 668 (794)
T ss_pred CCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeeccc--chhHHHHHH
Confidence 99999998999999999999997 79999999999999999999987 888888653
No 113
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.10 E-value=2.5e-09 Score=110.92 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHH
Q 009217 371 ENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVP 448 (540)
Q Consensus 371 ~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~ 448 (540)
+.++++++.+.+ ++++|-| |.+. +....|.++ +++ ++|+...++....+..+|..||+++..|..|+|++++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~t--e~s~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al 364 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALT--EMSSKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAV 364 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecC--cccHHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHH
Confidence 789999999976 6999999 7553 245778888 666 5787788887766779999999999999999999999
Q ss_pred HHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHH
Q 009217 449 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKI 512 (540)
Q Consensus 449 lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~ 512 (540)
+||++.|+|+++.+... |..+++. + |.+++..++++|+++|..+++|++.+++.-
T Consensus 365 ~eA~~~G~pI~afd~t~-~~~~~i~-----~---g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~ 419 (438)
T TIGR02919 365 RRAFEYNLLILGFEETA-HNRDFIA-----S---ENIFEHNEVDQLISKLKDLLNDPNQFRELL 419 (438)
T ss_pred HHHHHcCCcEEEEeccc-CCccccc-----C---CceecCCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999998743 4556665 2 479999999999999999999998776643
No 114
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2e-07 Score=96.19 Aligned_cols=308 Identities=11% Similarity=0.092 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCcccc
Q 009217 166 ERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARL 245 (540)
Q Consensus 166 ~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~ 245 (540)
..|.-..+...+.+.+.-..=|+|-+||++-.++|.+++.. ..+.++.+++|-. +|...+-.| +|+
T Consensus 128 ~~Y~~vN~~FAd~i~~~~~~gDiIWVhDYhL~L~P~mlR~~-----~~~~~IgfFlHiP-----fPssEvfr~-lP~--- 193 (486)
T COG0380 128 DAYVKVNRKFADKIVEIYEPGDIIWVHDYHLLLVPQMLRER-----IPDAKIGFFLHIP-----FPSSEVFRC-LPW--- 193 (486)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEechhhhhHHHHHHh-----CCCceEEEEEeCC-----CCCHHHHhh-Cch---
Confidence 33433444555555443233499999999988998888763 4677999999953 222211000 110
Q ss_pred CCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhc---ccC----CCchHH-hhhccCceEEeccCCCCCCCC
Q 009217 246 HRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR---SLS----HGLEST-LAIHQDKLLVAPCGFDSSTWD 317 (540)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~---~~~----~gl~~~-l~~~~~ki~vI~nGvd~~~~~ 317 (540)
..-+..++..||.|-+-++.++...... ..+ .+.... ......++..+|-|||+..|.
T Consensus 194 --------------r~eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~ 259 (486)
T COG0380 194 --------------REEILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFE 259 (486)
T ss_pred --------------HHHHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHH
Confidence 1112235666777777777766543221 110 000000 001235678889999987664
Q ss_pred CCCCcccccccCcccccCcH--HHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc------CcEEEE
Q 009217 318 PSNDKFLTENYCAEDMKGKT--VCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVF 389 (540)
Q Consensus 318 p~~~~~l~~~~~~~~~~~k~--~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~------~~~lvi 389 (540)
-.. .++. ....++++.++- +..+++++-|+++-||+..=+.|++++++. ++.|+-
T Consensus 260 ~~~-------------~~~~v~~~~~el~~~~~~----~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQ 322 (486)
T COG0380 260 RAL-------------KSPSVQEKVLELKAELGR----NKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQ 322 (486)
T ss_pred Hhh-------------cCCchhhHHHHHHHHhcC----CceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEE
Confidence 321 0011 123345555542 257899999999999999999999999852 455555
Q ss_pred EecCCC---hh---HHHHHHHHHHHh----CC---CcEEEEEe-cChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcC
Q 009217 390 TGTNKL---PS---ASRALVSFQEEL----KD---GIVIFVDS-YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG 455 (540)
Q Consensus 390 ~G~g~~---~~---~~~~l~~l~~~~----~~---~~v~f~~~-~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G 455 (540)
++.... +. +...++.++.+. +. .-|+++.. ++.+++..+|+.||++++.|..|++-+|..|.-+|-
T Consensus 323 i~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q 402 (486)
T COG0380 323 IAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQ 402 (486)
T ss_pred ecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhh
Confidence 553322 22 333444444443 31 23555543 678888999999999999999999999999988763
Q ss_pred ----CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHH
Q 009217 456 ----AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCND 528 (540)
Q Consensus 456 ----~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~ 528 (540)
-|.|-|.. -|....+. + .++++|.|.++++++|...++ .++.+++.-+.-++ ..++-+.-+..
T Consensus 403 ~~~~G~LiLSeF--aGaa~~L~------~--AliVNP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~ 472 (486)
T COG0380 403 RDKPGVLILSEF--AGAASELR------D--ALIVNPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANS 472 (486)
T ss_pred cCCCCcEEEecc--ccchhhhc------c--CEeECCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35777776 45454443 1 289999999999999999887 33444333332222 45555555555
No 115
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.95 E-value=2.6e-08 Score=87.32 Aligned_cols=137 Identities=20% Similarity=0.306 Sum_probs=82.2
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEc
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVS 137 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (540)
|||+|+... +.++..+++.|.++||+|+++++..+..... ..+
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~----------------------------~~~ 43 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRNDYEKYE----------------------------IIE 43 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCCCchhhh----------------------------HhC
Confidence 689988642 3578899999999999999999854421110 134
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCch-hhHHHHHHHHHhhcCCCC-C
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWET-AIVGPLFWDIFVKQGLEG-T 215 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~-~~~~~~~~~~~~~~~~~~-~ 215 (540)
|+.++.++. + +.... ..+.+ ....+.+++ .+|||||+|...+ ++++.+++. +.+ +
T Consensus 44 ~i~~~~~~~---~----~k~~~------~~~~~--~~l~k~ik~--~~~DvIh~h~~~~~~~~~~l~~~------~~~~~ 100 (139)
T PF13477_consen 44 GIKVIRLPS---P----RKSPL------NYIKY--FRLRKIIKK--EKPDVIHCHTPSPYGLFAMLAKK------LLKNK 100 (139)
T ss_pred CeEEEEecC---C----CCccH------HHHHH--HHHHHHhcc--CCCCEEEEecCChHHHHHHHHHH------HcCCC
Confidence 667766631 0 10000 11111 233344443 6899999998654 566655543 245 8
Q ss_pred ceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeecc
Q 009217 216 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVS 277 (540)
Q Consensus 216 p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS 277 (540)
|+|+|.|+..+...... ... ...+.+.+++.||.|++.|
T Consensus 101 ~~i~~~hg~~~~~~~~~------------------~~~-----~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 101 KVIYTVHGSDFYNSSKK------------------KKL-----KKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred CEEEEecCCeeecCCch------------------HHH-----HHHHHHHHHHhCCEEEEcC
Confidence 99999997543110000 000 1246667888999999865
No 116
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.82 E-value=2.5e-06 Score=87.42 Aligned_cols=271 Identities=13% Similarity=0.110 Sum_probs=149.4
Q ss_pred HHHHHHHHHcCCCCCEEEEcC-CchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 173 RASLDYIVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~pDIIH~h~-~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
..+.+++.+ .+||+|-+|. -.+.+.+.++.. ..++|++ ++|+-...+ +. ++
T Consensus 83 ~~~~~~~~~--~~Pd~vlv~GD~~~~la~alaA~------~~~IPv~-HveaG~rs~----------~~-------~e-- 134 (365)
T TIGR03568 83 IGFSDAFER--LKPDLVVVLGDRFEMLAAAIAAA------LLNIPIA-HIHGGEVTE----------GA-------ID-- 134 (365)
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH------HhCCcEE-EEECCccCC----------CC-------ch--
Confidence 344444443 6899999987 445555444433 2789987 345422110 00 00
Q ss_pred cCCCCCccchhhhH-HHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEecc-CCCCCCCCCCCCcccccccC
Q 009217 252 QDNTKTHLVNILKG-GVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPC-GFDSSTWDPSNDKFLTENYC 329 (540)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~n-Gvd~~~~~p~~~~~l~~~~~ 329 (540)
...+. .-+.|+...+.++..++.+... | . ++.++.++-| ++|.-.+...
T Consensus 135 ---------E~~r~~i~~la~l~f~~t~~~~~~L~~e--g--~------~~~~i~~tG~~~iD~l~~~~~---------- 185 (365)
T TIGR03568 135 ---------ESIRHAITKLSHLHFVATEEYRQRVIQM--G--E------DPDRVFNVGSPGLDNILSLDL---------- 185 (365)
T ss_pred ---------HHHHHHHHHHHhhccCCCHHHHHHHHHc--C--C------CCCcEEEECCcHHHHHHhhhc----------
Confidence 11111 2234566666665555544432 1 1 3567777665 4443211110
Q ss_pred cccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc--ccCCHHHHHHHHHHHHhcCcEEEEEec--CC-ChhHHHHHHH
Q 009217 330 AEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV--SDVFLENLKAVVRGAKMRGIQFVFTGT--NK-LPSASRALVS 404 (540)
Q Consensus 330 ~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~--~~KG~~~Li~A~~~l~~~~~~lvi~G~--g~-~~~~~~~l~~ 404 (540)
..+..+.+++|++.+. ..+++..-|-. .....+.+.+.++.+.+.+.+.+++.. ++ .....+.+++
T Consensus 186 --------~~~~~~~~~lgl~~~~-~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~ 256 (365)
T TIGR03568 186 --------LSKEELEEKLGIDLDK-PYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEE 256 (365)
T ss_pred --------cCHHHHHHHhCCCCCC-CEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHH
Confidence 0234567788875322 23333333322 333334444444444432222344422 22 1233445555
Q ss_pred HHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCcccccee
Q 009217 405 FQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRF 484 (540)
Q Consensus 405 l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~ 484 (540)
+... .++|.+.+..+-.+...+++.||++|--|- |.. .||.++|+|+|+ . |.-+|.+. .|.+.+
T Consensus 257 ~~~~--~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS----ggi-~EA~~lg~Pvv~--l--~~R~e~~~-----~g~nvl 320 (365)
T TIGR03568 257 YVNE--HPNFRLFKSLGQERYLSLLKNADAVIGNSS----SGI-IEAPSFGVPTIN--I--GTRQKGRL-----RADSVI 320 (365)
T ss_pred HhcC--CCCEEEECCCChHHHHHHHHhCCEEEEcCh----hHH-HhhhhcCCCEEe--e--cCCchhhh-----hcCeEE
Confidence 4322 258999988888888899999999997653 233 899999999995 4 66677775 355556
Q ss_pred ecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHHHH
Q 009217 485 ISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDI 529 (540)
Q Consensus 485 l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~ 529 (540)
++ +.|++++.+++..+ .+++.++.+.. ....|.....++++
T Consensus 321 ~v-g~~~~~I~~a~~~~-~~~~~~~~~~~--~~~pygdg~as~rI 361 (365)
T TIGR03568 321 DV-DPDKEEIVKAIEKL-LDPAFKKSLKN--VKNPYGDGNSSERI 361 (365)
T ss_pred Ee-CCCHHHHHHHHHHH-hChHHHHHHhh--CCCCCCCChHHHHH
Confidence 56 66788999999995 45555444422 23567777777775
No 117
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.3e-08 Score=98.79 Aligned_cols=309 Identities=14% Similarity=0.152 Sum_probs=170.9
Q ss_pred CEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCC---CCCCCC---hhhhhhcCCCccccCCCccccCCCCCccc
Q 009217 187 DVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLN---SLCLEH---PDKLALCGLDPARLHRPDRLQDNTKTHLV 260 (540)
Q Consensus 187 DIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~---~~~~~~---~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 260 (540)
=|-|.|.|+++..-++.+. +...+-.|+|.|..- |.|.-. ...+....++.+. .+.+.| +..
T Consensus 176 vVahFHEW~AGVgL~l~R~-----rrl~iaTifTTHATLLGRyLCA~~~DfYNnLd~f~vD~EA----Gkr~IY---HrY 243 (692)
T KOG3742|consen 176 VVAHFHEWQAGVGLILCRA-----RRLDIATIFTTHATLLGRYLCAGNVDFYNNLDSFDVDKEA----GKRQIY---HRY 243 (692)
T ss_pred HHHHHHHHHhccchheehh-----cccceEEEeehhHHHHHHHHhcccchhhhchhhcccchhh----ccchhH---HHH
Confidence 3558999998876444432 236777899999632 111000 0112222222211 112222 234
Q ss_pred hhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccc--cCcHH
Q 009217 261 NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDM--KGKTV 338 (540)
Q Consensus 261 ~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~--~~k~~ 338 (540)
-+.+.+...|+.+++||+-.+-+... +|. .++-.+.|||++...|+.... |. ++ ..|..
T Consensus 244 C~ERaa~h~AhVFTTVSeITa~EAeH---------lLk--RKPD~itPNGLNV~KFsA~HE------FQ--NLHA~~Kek 304 (692)
T KOG3742|consen 244 CLERAAAHTAHVFTTVSEITALEAEH---------LLK--RKPDVITPNGLNVKKFSAVHE------FQ--NLHAQKKEK 304 (692)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHH---------HHh--cCCCeeCCCCcceeehhHHHH------HH--HHHHHHHHH
Confidence 56677788899999999866544321 222 344567899999887754310 00 00 01222
Q ss_pred HHHHHHHHh-C-CCCC-CCceEEEEEeccc-ccCCHHHHHHHHHHHHh------cC---cEEEEEecCCC----------
Q 009217 339 CKVTLQQQL-G-LSKD-ASTIVVGCIFSDV-SDVFLENLKAVVRGAKM------RG---IQFVFTGTNKL---------- 395 (540)
Q Consensus 339 ~~~~lr~~~-g-l~~~-~~~~lv~~vgrl~-~~KG~~~Li~A~~~l~~------~~---~~lvi~G~g~~---------- 395 (540)
-.+-+|-.+ | +..+ ++...+...||.. .+||.|.+||++++|.. .+ +.|+|.-....
T Consensus 305 IndFVRGHF~GhlDFdLdkTlyfFiAGRYEf~NKGaDmFiEsLaRLN~~Lk~~~s~~TVVaFlImPaktN~FnVesLkgq 384 (692)
T KOG3742|consen 305 INDFVRGHFHGHLDFDLDKTLYFFIAGRYEFSNKGADMFIESLARLNYLLKVSGSPKTVVAFLIMPAKTNSFNVESLKGQ 384 (692)
T ss_pred HHHHhhhhccccccccccceEEEEEeeeeeeccCchHHHHHHHHHhHHHHeecCCCceEEEEEEeecCCCccchhhhccH
Confidence 222233332 1 1112 2456677779965 78999999999998853 11 23333321000
Q ss_pred ------------------------------hhHHHH-------------------------------------HHHHH--
Q 009217 396 ------------------------------PSASRA-------------------------------------LVSFQ-- 406 (540)
Q Consensus 396 ------------------------------~~~~~~-------------------------------------l~~l~-- 406 (540)
|+..+. |..+.
T Consensus 385 Av~kqL~dtv~~Vk~~~Gkrifd~~l~g~lPd~~ell~~~d~v~lKr~i~a~~r~slPPv~THNm~dDa~DpiL~~iRr~ 464 (692)
T KOG3742|consen 385 AVRKQLWDTVNEVKEKVGKRIFDHCLRGELPDLDELLDKDDLVLLKRCIFALQRQSLPPVCTHNMIDDANDPILSSIRRI 464 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHhhChhHHHHHHHHHHHhccCCCCCceeccccccccchHHHHhHhh
Confidence 000000 00100
Q ss_pred HHhC--CCcEE--EEEecC-------hHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccc----
Q 009217 407 EELK--DGIVI--FVDSYD-------DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHF---- 471 (540)
Q Consensus 407 ~~~~--~~~v~--f~~~~~-------~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~---- 471 (540)
.-++ .+||. |...+- .-...++.++|.+-|+||.|||+|.+..|.--+|.|-|.++. .|+.-.
T Consensus 465 ~LFN~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNl--SGFGcfMeeh 542 (692)
T KOG3742|consen 465 GLFNSPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNL--SGFGCFMEEH 542 (692)
T ss_pred hcccCcccceEEEecHHHhccCCCCcCCCHHHHhccccccccccccCCCCCCchheEEeccccccccc--cchhhhHHHH
Confidence 0111 14544 322220 012346889999999999999999999999999999999999 777644
Q ss_pred eeccCCccccceeecC------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHh----ccCChHHHHHHHHHHH
Q 009217 472 AEFDHESTRFSRFISS------TFGNISLSQALEEIKNNPLSWKRKIKDAML----QDFSWDADCNDIHISA 533 (540)
Q Consensus 472 v~~~~~~~g~~G~l~~------~~d~~~la~ai~~l~~~~~~~~~~~~~a~~----~~fsw~~~a~~~y~~l 533 (540)
|.+.+ .-|. ++++ ..+.++|++.+..+. ....++++.++-+. .-.+|..+... |.+.
T Consensus 543 i~d~~-ayGI--YIvDRRfks~deSv~qL~~~m~~F~-~qsRRQRIiqRNrtErLSdLLDWk~lG~~-Y~~a 609 (692)
T KOG3742|consen 543 IEDPQ-AYGI--YIVDRRFKSPDESVQQLASFMYEFC-KQSRRQRIIQRNRTERLSDLLDWKYLGRY-YRKA 609 (692)
T ss_pred hcCch-hceE--EEEecccCChhhHHHHHHHHHHHHH-HHHHHHHHHHhcchhhHHHHHhHHHHhHH-HHHH
Confidence 43322 2333 4443 233567888888775 44556666654432 56889998876 4554
No 118
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=98.65 E-value=2.9e-06 Score=91.20 Aligned_cols=210 Identities=17% Similarity=0.179 Sum_probs=124.2
Q ss_pred ccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCc--------cccccc-
Q 009217 258 HLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDK--------FLTENY- 328 (540)
Q Consensus 258 ~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~--------~l~~~~- 328 (540)
..+++-..+++.|..|-.||.-+.+-++..-+ .......++|+.-|.|||....|--...+ ++....
T Consensus 320 ~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f----~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~ 395 (713)
T PF00343_consen 320 KRFRMANLALRGSHSVNGVSKLHGEVLKQMVF----KDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWR 395 (713)
T ss_dssp CEEEHHHHHHHCESEEEESSHHHHHHHHHTTT----HHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGG
T ss_pred hhcchhHHHHHhcccccchHHHHHHHHHHHHh----hhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccc
Confidence 46888888999999999999877553333211 12233356789999999999998532111 111111
Q ss_pred -Ccccc------c-----------CcHHHHH----HHHHHhCCCCCCCceEEEEEecccccCCHHH-HHHH---HHHHHh
Q 009217 329 -CAEDM------K-----------GKTVCKV----TLQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAV---VRGAKM 382 (540)
Q Consensus 329 -~~~~~------~-----------~k~~~~~----~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~-Li~A---~~~l~~ 382 (540)
+++.+ . -|..+|. .++++.|+..+++....+++-|+..+|...+ ++.. +.++++
T Consensus 396 ~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~ 475 (713)
T PF00343_consen 396 TDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKN 475 (713)
T ss_dssp CSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHh
Confidence 11111 0 1122222 2345677766777888899999999999887 3333 344443
Q ss_pred ------cCcEEEEEecCCChhH--HHH----HHHHHHHh---C-C-C--cEEEEEecChHHHHHHHhcCCEEEECCC--C
Q 009217 383 ------RGIQFVFTGTNKLPSA--SRA----LVSFQEEL---K-D-G--IVIFVDSYDDALLHLIFSGSDIILCHSF--H 441 (540)
Q Consensus 383 ------~~~~lvi~G~g~~~~~--~~~----l~~l~~~~---~-~-~--~v~f~~~~~~~~~~~~~~~aDi~v~PS~--~ 441 (540)
.++++++.|..- |.+ ..+ +.++++.. + . + +|.|+..|+-.....++.+||+...-|+ .
T Consensus 476 ~p~~~~~Pv~~IFaGKAh-P~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~ 554 (713)
T PF00343_consen 476 NPNKKIRPVQFIFAGKAH-PGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPK 554 (713)
T ss_dssp STTSCCS-EEEEEE-----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTS
T ss_pred cccCCCCCeEEEEeccCC-CCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCc
Confidence 257899999642 322 222 33334322 1 1 3 7899999999999999999999999987 8
Q ss_pred CCCchHHHHHHhcCCceEEEecCCCccccceec
Q 009217 442 DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF 474 (540)
Q Consensus 442 E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~ 474 (540)
|++|.+.|.||..|.+-+++-. |...|+.+.
T Consensus 555 EASGTSgMK~~~NGaL~lstlD--G~niEi~e~ 585 (713)
T PF00343_consen 555 EASGTSGMKAAMNGALNLSTLD--GWNIEIAEA 585 (713)
T ss_dssp SSS-SHHHHHHHTT-EEEEESS--TCHHHHHHH
T ss_pred cccCCCcchhhcCCCeEEeccc--chhHHHHHh
Confidence 9999999999999999888877 888888653
No 119
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.60 E-value=1.9e-05 Score=81.80 Aligned_cols=151 Identities=13% Similarity=0.026 Sum_probs=90.6
Q ss_pred ccCCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCC---------------CcEEEEEecChHHHHHHH
Q 009217 366 SDVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKD---------------GIVIFVDSYDDALLHLIF 429 (540)
Q Consensus 366 ~~KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~---------------~~v~f~~~~~~~~~~~~~ 429 (540)
-.+.+..++++++.+.+ .++++++.-.+. .. .+.+++..+..+. +++.+...+ .....+|
T Consensus 219 ~~~~lp~~l~al~~L~~~~~~~~v~~~~~~-~~-~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l 294 (396)
T TIGR03492 219 AYRNLKLLLRALEALPDSQPFVFLAAIVPS-LS-LEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEIL 294 (396)
T ss_pred HHccHHHHHHHHHHHhhCCCeEEEEEeCCC-CC-HHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHH
Confidence 33567789999988864 477776643121 12 2334443332221 125544333 2356899
Q ss_pred hcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccc---cceeccCCccccceeecCCCCHHHHHHHHHHHhcCHH
Q 009217 430 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR---HFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 430 ~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~---e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~ 506 (540)
++||++|+.| |.+..|++++|+|+|+... .+-. .+......-.|. .......+++.|++++..+++|++
T Consensus 295 ~~ADlvI~rS-----Gt~T~E~a~lg~P~Ilip~--~~~q~na~~~~~~~~l~g~-~~~l~~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 295 HWADLGIAMA-----GTATEQAVGLGKPVIQLPG--KGPQFTYGFAEAQSRLLGG-SVFLASKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred HhCCEEEECc-----CHHHHHHHHhCCCEEEEeC--CCCHHHHHHHHhhHhhcCC-EEecCCCCHHHHHHHHHHHHcCHH
Confidence 9999999985 4666999999999999874 2211 111110000021 244456777999999999999999
Q ss_pred HHHHHHHHHHh---ccCChHHHHHH
Q 009217 507 SWKRKIKDAML---QDFSWDADCND 528 (540)
Q Consensus 507 ~~~~~~~~a~~---~~fsw~~~a~~ 528 (540)
.+++|.+++.. +....+++++.
T Consensus 367 ~~~~~~~~~~~~lg~~~a~~~ia~~ 391 (396)
T TIGR03492 367 LLERCRRNGQERMGPPGASARIAES 391 (396)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 98888743332 33444454443
No 120
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.58 E-value=2.2e-05 Score=81.77 Aligned_cols=130 Identities=18% Similarity=0.076 Sum_probs=76.9
Q ss_pred ceEEEEEecccc---cCCHHHHHHHHHHHHhcCcEEEE-EecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh
Q 009217 355 TIVVGCIFSDVS---DVFLENLKAVVRGAKMRGIQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS 430 (540)
Q Consensus 355 ~~lv~~vgrl~~---~KG~~~Li~A~~~l~~~~~~lvi-~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 430 (540)
.++++..|.... ++-...+++|+.. .+.++++ +|.... .. ... .++|.+.+..+.. .++.
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~---~~~~~i~~~g~~~~---~~------~~~-~~~v~~~~~~p~~---~ll~ 303 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVAT---LGQRAILSLGWGGL---GA------EDL-PDNVRVVDFVPHD---WLLP 303 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHH---cCCeEEEEccCccc---cc------cCC-CCceEEeCCCCHH---HHhh
Confidence 456667787744 3333444555443 3666655 453321 11 122 2788877666543 5688
Q ss_pred cCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCcc----ccceeccCCccccceeecCCC--CHHHHHHHHHHHhcC
Q 009217 431 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEF----RHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNN 504 (540)
Q Consensus 431 ~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~----~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~ 504 (540)
.||++|.- +-.-+..||+++|+|.|+... .+- .+.+.. .|. |...+.. ++++|.+++.+++++
T Consensus 304 ~~d~~I~h----gG~~t~~eal~~GvP~v~~P~--~~dQ~~~a~~~~~----~G~-g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 304 RCAAVVHH----GGAGTTAAALRAGVPQLVVPF--FGDQPFWAARVAE----LGA-GPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred hhheeeec----CCchhHHHHHHcCCCEEeeCC--CCCcHHHHHHHHH----CCC-CCCCCcccCCHHHHHHHHHHHhCH
Confidence 89999944 224678999999999999866 331 111111 222 3444433 678999999999885
Q ss_pred HHHHHHHH
Q 009217 505 PLSWKRKI 512 (540)
Q Consensus 505 ~~~~~~~~ 512 (540)
+ .+++..
T Consensus 373 ~-~~~~~~ 379 (401)
T cd03784 373 P-SRRRAA 379 (401)
T ss_pred H-HHHHHH
Confidence 4 344443
No 121
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.49 E-value=4.1e-06 Score=86.59 Aligned_cols=182 Identities=12% Similarity=0.022 Sum_probs=112.7
Q ss_pred HHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEEe
Q 009217 344 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDS 419 (540)
Q Consensus 344 r~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~~ 419 (540)
|+.+|+|.+ ..++++..++.+- -+..++++.++++ ++.+|++.. .+. ..++.+++.+++.+. +|+.|.+.
T Consensus 276 R~~~gLp~d--~vvF~~fn~~~KI--~p~~l~~W~~IL~~vP~S~L~L~~-~~~-~~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 276 RAQYGLPED--AVVFGSFNNLFKI--SPETLDLWARILKAVPNSRLWLLR-FPA-SGEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp TGGGT--SS--SEEEEE-S-GGG----HHHHHHHHHHHHHSTTEEEEEEE-TST-THHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred HHHcCCCCC--ceEEEecCccccC--CHHHHHHHHHHHHhCCCcEEEEee-CCH-HHHHHHHHHHHHcCCChhhEEEcCC
Confidence 678999865 5788888887776 5578999988886 588998877 332 345677777777774 89999876
Q ss_pred cChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC-CccccceeecCCCCHHHHHHHH
Q 009217 420 YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQAL 498 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~-~~~g~~G~l~~~~d~~~la~ai 498 (540)
.+.++-...|+.+|+++=|.-+-+ +.+.+||+.+|+|+|+..- ..+..=+.... ..-|.+.++. .+.++..+.-
T Consensus 350 ~~~~ehl~~~~~~DI~LDT~p~nG-~TTt~dALwmGVPvVTl~G--~~~~sR~~aSiL~~lGl~ElIA--~s~~eYv~~A 424 (468)
T PF13844_consen 350 APREEHLRRYQLADICLDTFPYNG-GTTTLDALWMGVPVVTLPG--ETMASRVGASILRALGLPELIA--DSEEEYVEIA 424 (468)
T ss_dssp --HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB-----SSGGGSHHHHHHHHHT-GGGB---SSHHHHHHHH
T ss_pred CCHHHHHHHhhhCCEEeeCCCCCC-cHHHHHHHHcCCCEEeccC--CCchhHHHHHHHHHcCCchhcC--CCHHHHHHHH
Confidence 666665577899999999865533 7899999999998877642 12111111000 0123333443 3567787777
Q ss_pred HHHhcCHHHHHHHHHHHHh-----ccCChHHHHHHHHHHHHHHH
Q 009217 499 EEIKNNPLSWKRKIKDAML-----QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 499 ~~l~~~~~~~~~~~~~a~~-----~~fsw~~~a~~~y~~lY~~l 537 (540)
..+.+|++.+++++++-++ .-|+-...++++ ++.|+++
T Consensus 425 v~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~l-E~a~~~m 467 (468)
T PF13844_consen 425 VRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNL-EAAYRQM 467 (468)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHH-HHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH-HHHHHHh
Confidence 7888899988887765432 458999999995 9999875
No 122
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.39 E-value=4.5e-05 Score=76.75 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=78.8
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
..+++++|..... .++++++.+ .+.+++++|.+.. +.. .++|++. .++.....+++++||+
T Consensus 193 ~~iLv~~gg~~~~----~~~~~l~~~--~~~~~~v~g~~~~-----------~~~-~~ni~~~-~~~~~~~~~~m~~ad~ 253 (318)
T PF13528_consen 193 PKILVYFGGGGPG----DLIEALKAL--PDYQFIVFGPNAA-----------DPR-PGNIHVR-PFSTPDFAELMAAADL 253 (318)
T ss_pred CEEEEEeCCCcHH----HHHHHHHhC--CCCeEEEEcCCcc-----------ccc-CCCEEEe-ecChHHHHHHHHhCCE
Confidence 4578888887666 567777664 3688999984410 101 2688865 6665566789999999
Q ss_pred EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec--cCCccccceeecC--CCCHHHHHHHHHHH
Q 009217 435 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF--DHESTRFSRFISS--TFGNISLSQALEEI 501 (540)
Q Consensus 435 ~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~--~~~~~g~~G~l~~--~~d~~~la~ai~~l 501 (540)
+|.-+-+ .+++||+++|+|.|+-.. .+..|.... .-+..|. |...+ ..+++.|+++|+++
T Consensus 254 vIs~~G~----~t~~Ea~~~g~P~l~ip~--~~~~EQ~~~a~~l~~~G~-~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 254 VISKGGY----TTISEALALGKPALVIPR--PGQDEQEYNARKLEELGL-GIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEECCCH----HHHHHHHHcCCCEEEEeC--CCCchHHHHHHHHHHCCC-eEEcccccCCHHHHHHHHhcC
Confidence 9987533 348999999999999877 555554210 0011233 23433 45678888888764
No 123
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.36 E-value=0.00033 Score=69.09 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=68.5
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEE-EEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFV-FTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lv-i~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
.++++.|..++.+....+++++..+. .+.++. ++|.+. + ..++++++.+.. .++++. .+.+ .+.++++.||+
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~-~-~~~~l~~~~~~~--~~i~~~-~~~~-~m~~lm~~aDl 244 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSN-P-NLDELKKFAKEY--PNIILF-IDVE-NMAELMNEADL 244 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCC-c-CHHHHHHHHHhC--CCEEEE-eCHH-HHHHHHHHCCE
Confidence 46778888888776667788877653 345543 566542 2 345677776654 478755 4443 45689999999
Q ss_pred EEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 435 ILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 435 ~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
+|.+ .|.+..|++++|+|.|+...
T Consensus 245 ~Is~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 245 AIGA-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred EEEC-----CchHHHHHHHcCCCEEEEEe
Confidence 9985 67999999999999998754
No 124
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.36 E-value=0.00037 Score=69.47 Aligned_cols=162 Identities=16% Similarity=0.093 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCCCCCceEEEEEeccccc--CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcE
Q 009217 339 CKVTLQQQLGLSKDASTIVVGCIFSDVSD--VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIV 414 (540)
Q Consensus 339 ~~~~lr~~~gl~~~~~~~lv~~vgrl~~~--KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v 414 (540)
+++.+|+++|++.+. ..+.+..|.=..+ .-...+.+|+..+.+ ++.+|++-=.. +.++....+.... ...+.
T Consensus 174 ~r~~ar~~l~~~~~~-~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~--~~~~~~~~~~~~~-~~~~~ 249 (381)
T COG0763 174 DREAAREKLGIDADE-KTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVN--AKYRRIIEEALKW-EVAGL 249 (381)
T ss_pred cHHHHHHHhCCCCCC-CeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc--HHHHHHHHHHhhc-cccCc
Confidence 567799999998764 3455555542222 234456677777764 58888886633 2222222222221 11111
Q ss_pred EEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEec---------------CCCccccceeccCCcc
Q 009217 415 IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS---------------SDIEFRHFAEFDHEST 479 (540)
Q Consensus 415 ~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~---------------~~gg~~e~v~~~~~~~ 479 (540)
..-..+......+++||+.+..| |.+.+|+|.+|+|.|++-- ..-+++.++-......
T Consensus 250 --~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivP 322 (381)
T COG0763 250 --SLILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVP 322 (381)
T ss_pred --eEEecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccch
Confidence 11234455667899999998876 7999999999999887543 1122233322100000
Q ss_pred ccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 009217 480 RFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKD 514 (540)
Q Consensus 480 g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~ 514 (540)
=++-....++.|++++..++.|++.++++.+.
T Consensus 323 ---Eliq~~~~pe~la~~l~~ll~~~~~~~~~~~~ 354 (381)
T COG0763 323 ---ELIQEDCTPENLARALEELLLNGDRREALKEK 354 (381)
T ss_pred ---HHHhhhcCHHHHHHHHHHHhcChHhHHHHHHH
Confidence 02333456789999999999998666555443
No 125
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=98.26 E-value=1e-05 Score=82.53 Aligned_cols=209 Identities=13% Similarity=0.118 Sum_probs=101.1
Q ss_pred HHhhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccc-------cccccccHHHHHhHHHHHHHHc--------CC-
Q 009217 28 DLFADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMD-------PLVSIGSLASYVTGLSGALQRK--------GH- 91 (540)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~-------P~~~~GG~~~~v~~L~~~L~~~--------Gh- 91 (540)
....++.+..|...+.++..-. .+-.+|++++.+-+ -...+||.-+|+.+++++|.+. |-
T Consensus 248 ~lL~dll~aPdp~~LE~Fl~Ri----Pmvf~vvliSpHG~f~q~nvLG~pDTGGQVvYVleqarALe~e~~~ri~~~gl~ 323 (550)
T PF00862_consen 248 HLLSDLLEAPDPSTLEKFLSRI----PMVFNVVLISPHGYFGQENVLGRPDTGGQVVYVLEQARALENEMLYRIKLQGLD 323 (550)
T ss_dssp HHHHHHHHS--HHHHHHHHHHS-------SEEEEE--SS--STTSTTSSTTSSHHHHHHHHHHHHHHHHTHHHHHHTT--
T ss_pred HHHHHHHhCCCchHHHHHhhhc----ceeEEEEEEcCccccccccccCCCCCCCcEEEEeHHHHHHHHHHHHHHHhcCCC
Confidence 3445566777777554433322 12368999987622 1135799999999999999763 43
Q ss_pred ---eEEEEeecCCCCcccc-ccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCC----CCCCCCCCCCCCCCC
Q 009217 92 ---LVEVILPKYACMNLDG-VQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLH----YSSFFNRESVYGYSD 163 (540)
Q Consensus 92 ---~V~vi~p~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~----~~~~~~~~~~y~~~~ 163 (540)
+|.++|..-+...... -..+.. ..+ -++..+.+++--. ..++..|..+|.|.+
T Consensus 324 i~p~i~i~TRlIpd~~~t~~~q~le~-------~~g------------t~~a~IlRvPF~~~~gi~~kwisrf~lWPyLe 384 (550)
T PF00862_consen 324 ITPKIDIVTRLIPDAKGTTCNQRLEK-------VSG------------TENARILRVPFGPEKGILRKWISRFDLWPYLE 384 (550)
T ss_dssp ---EEEEEEE--TBTTCGGGTSSEEE-------ETT------------ESSEEEEEE-ESESTEEE-S---GGG-GGGHH
T ss_pred CCCceeeecccccCCcCCCccccccc-------cCC------------CCCcEEEEecCCCCcchhhhccchhhchhhHH
Confidence 3777775433211110 001111 111 1234444443100 012334434443322
Q ss_pred hhHHHHHHHHHHHH-HHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCc
Q 009217 164 DFERFTYFSRASLD-YIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDP 242 (540)
Q Consensus 164 ~~~r~~~~~~~~~~-~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~ 242 (540)
+ |+..+.. +....+.+||+||.|...+++++.+++.+ .++|.++|-|.++. .++...++.+
T Consensus 385 ---~---fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~------lgv~~~~iaHsLek------~Ky~~s~~~w 446 (550)
T PF00862_consen 385 ---E---FADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRK------LGVTQCFIAHSLEK------TKYEDSDLYW 446 (550)
T ss_dssp ---H---HHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHH------HT-EEEEE-SS-HH------HHHHTTTTTS
T ss_pred ---H---HHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhh------cCCceehhhhcccc------ccccccCCCH
Confidence 2 2334433 33445678999999988889998888764 79999999997642 2222223322
Q ss_pred cccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhh
Q 009217 243 ARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRI 285 (540)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~ 285 (540)
+.+. +.|.-..++.....++++||.|||-+ .+|+.
T Consensus 447 ~e~e-----~~Yhfs~qftAd~iamn~adfIItST---~QEI~ 481 (550)
T PF00862_consen 447 KEIE-----EKYHFSCQFTADLIAMNAADFIITST---YQEIA 481 (550)
T ss_dssp HHHH-----HHH-HHHHHHHHHHHHHHSSEEEESS---HHHHH
T ss_pred HHHH-----hhccchhhhhHHHHHhhcCCEEEEcc---hHhhc
Confidence 2210 00111123445556788999998733 34554
No 126
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.25 E-value=0.00077 Score=68.59 Aligned_cols=155 Identities=15% Similarity=0.081 Sum_probs=92.1
Q ss_pred HHHHHHhCCCCCCCceEEEEEe-ccccc-CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEE
Q 009217 341 VTLQQQLGLSKDASTIVVGCIF-SDVSD-VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIF 416 (540)
Q Consensus 341 ~~lr~~~gl~~~~~~~lv~~vg-rl~~~-KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f 416 (540)
...++.+ ++.+. ..+.+.-| |-.+- +-+..+++++..+.+ ++.++++.... ....+.+++.....+ .++..
T Consensus 173 ~~~~~~~-l~~~~-~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~--~~~~~~i~~~~~~~~-~~~~~ 247 (373)
T PF02684_consen 173 AEAREKL-LDPDK-PIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP--EVHEELIEEILAEYP-PDVSI 247 (373)
T ss_pred HHHHHhc-CCCCC-cEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC--HHHHHHHHHHHHhhC-CCCeE
Confidence 4455555 65432 22333444 33333 334667888888876 47888887632 233344555555443 23332
Q ss_pred EEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----------------cccceeccCCccc
Q 009217 417 VDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----------------FRHFAEFDHESTR 480 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----------------~~e~v~~~~~~~g 480 (540)
.. .+.....++++||+.+..| |.+.||++..|+|.|+.-. .+. ++.++-... -
T Consensus 248 ~~--~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~P~Vv~Yk-~~~lt~~iak~lvk~~~isL~Niia~~~---v 316 (373)
T PF02684_consen 248 VI--IEGESYDAMAAADAALAAS-----GTATLEAALLGVPMVVAYK-VSPLTYFIAKRLVKVKYISLPNIIAGRE---V 316 (373)
T ss_pred EE--cCCchHHHHHhCcchhhcC-----CHHHHHHHHhCCCEEEEEc-CcHHHHHHHHHhhcCCEeechhhhcCCC---c
Confidence 21 2233457899999999876 6999999999999887543 122 222221100 0
Q ss_pred cceeecCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009217 481 FSRFISSTFGNISLSQALEEIKNNPLSWKRK 511 (540)
Q Consensus 481 ~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~ 511 (540)
..=++-+..+++.+++++..+++|++.++..
T Consensus 317 ~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~ 347 (373)
T PF02684_consen 317 VPELIQEDATPENIAAELLELLENPEKRKKQ 347 (373)
T ss_pred chhhhcccCCHHHHHHHHHHHhcCHHHHHHH
Confidence 0014555678899999999999999775443
No 127
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.20 E-value=0.00083 Score=67.39 Aligned_cols=299 Identities=11% Similarity=0.045 Sum_probs=152.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++-... +| --.+...+.+.|.++||+|.|.+..++.... +-+ .
T Consensus 1 MkIwiDi~~-p~------hvhfFk~~I~eL~~~GheV~it~R~~~~~~~-----LL~----------------------~ 46 (335)
T PF04007_consen 1 MKIWIDITH-PA------HVHFFKNIIRELEKRGHEVLITARDKDETEE-----LLD----------------------L 46 (335)
T ss_pred CeEEEECCC-ch------HHHHHHHHHHHHHhCCCEEEEEEeccchHHH-----HHH----------------------H
Confidence 889876653 23 3578899999999999999999987764211 110 1
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHc-CCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCC
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKS-RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGT 215 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~-~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~ 215 (540)
-|++...+.. ++ .....+.........++++.. +++|||+-++....+. ... . ..++
T Consensus 47 yg~~y~~iG~------------~g-~~~~~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~a~--~va-~------~lgi 104 (335)
T PF04007_consen 47 YGIDYIVIGK------------HG-DSLYGKLLESIERQYKLLKLIKKFKPDVAISFGSPEAA--RVA-F------GLGI 104 (335)
T ss_pred cCCCeEEEcC------------CC-CCHHHHHHHHHHHHHHHHHHHHhhCCCEEEecCcHHHH--HHH-H------HhCC
Confidence 2555555531 11 111122222222223333221 3799999887532221 111 1 2688
Q ss_pred ceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchH
Q 009217 216 RILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLES 295 (540)
Q Consensus 216 p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~ 295 (540)
|.|.-..+- ... . ..+..+..||.+++.+- +.++... .+|
T Consensus 105 P~I~f~D~e-~a~-----------~---------------------~~~Lt~Pla~~i~~P~~-~~~~~~~-~~G----- 144 (335)
T PF04007_consen 105 PSIVFNDTE-HAI-----------A---------------------QNRLTLPLADVIITPEA-IPKEFLK-RFG----- 144 (335)
T ss_pred CeEEEecCc-hhh-----------c---------------------cceeehhcCCeeECCcc-cCHHHHH-hcC-----
Confidence 998876541 100 0 00112335777776543 2222221 122
Q ss_pred HhhhccCceEEe-ccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCC-----
Q 009217 296 TLAIHQDKLLVA-PCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVF----- 369 (540)
Q Consensus 296 ~l~~~~~ki~vI-~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG----- 369 (540)
.+-.+. +||++.-.|-.. |.+ ...+.+++|+..+ +.++ -|..+.+-
T Consensus 145 ------~~~~i~~y~G~~E~ayl~~--------F~P---------d~~vl~~lg~~~~---~yIv--vR~~~~~A~y~~~ 196 (335)
T PF04007_consen 145 ------AKNQIRTYNGYKELAYLHP--------FKP---------DPEVLKELGLDDE---PYIV--VRPEAWKASYDNG 196 (335)
T ss_pred ------CcCCEEEECCeeeEEeecC--------CCC---------ChhHHHHcCCCCC---CEEE--EEeccccCeeecC
Confidence 112344 888875433111 111 1346678886532 3333 24333221
Q ss_pred -HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHH
Q 009217 370 -LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVP 448 (540)
Q Consensus 370 -~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~ 448 (540)
-..+-+.++.+.+.+-.++++-...+ . +.+.++++ +.+... +- ..+.++.-||++|--+ |...
T Consensus 197 ~~~i~~~ii~~L~~~~~~vV~ipr~~~--~----~~~~~~~~---~~i~~~-~v-d~~~Ll~~a~l~Ig~g-----gTMa 260 (335)
T PF04007_consen 197 KKSILPEIIEELEKYGRNVVIIPRYED--Q----RELFEKYG---VIIPPE-PV-DGLDLLYYADLVIGGG-----GTMA 260 (335)
T ss_pred ccchHHHHHHHHHhhCceEEEecCCcc--h----hhHHhccC---ccccCC-CC-CHHHHHHhcCEEEeCC-----cHHH
Confidence 12455666666655444566653321 1 12223332 332211 11 1235677799999654 5778
Q ss_pred HHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 449 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 449 lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
.||...|+|.|.+.. |-... ++...... |+++...|++++.+.+...
T Consensus 261 ~EAA~LGtPaIs~~~--g~~~~-vd~~L~~~---Gll~~~~~~~ei~~~v~~~ 307 (335)
T PF04007_consen 261 REAALLGTPAISCFP--GKLLA-VDKYLIEK---GLLYHSTDPDEIVEYVRKN 307 (335)
T ss_pred HHHHHhCCCEEEecC--Ccchh-HHHHHHHC---CCeEecCCHHHHHHHHHHh
Confidence 999999999998764 32211 21100012 4788888888887755543
No 128
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.17 E-value=0.0013 Score=70.13 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=91.0
Q ss_pred HHHHHHHhCCCCCCCceEEEEEec-ccc-cCCHHHHHHHHH--HHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEE
Q 009217 340 KVTLQQQLGLSKDASTIVVGCIFS-DVS-DVFLENLKAVVR--GAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI 415 (540)
Q Consensus 340 ~~~lr~~~gl~~~~~~~lv~~vgr-l~~-~KG~~~Li~A~~--~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~ 415 (540)
+.+.++++|++.+. ..+.+.-|. -.+ .+-+..+++|++ .+. ++.++++.. .+ +...+.+++..+..+.-.+.
T Consensus 400 ~~~~r~~lgl~~~~-~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~-~~l~fvvp~-a~-~~~~~~i~~~~~~~~~~~~~ 475 (608)
T PRK01021 400 NLSWKEQLHLPSDK-PIVAAFPGSRRGDILRNLTIQVQAFLASSLA-STHQLLVSS-AN-PKYDHLILEVLQQEGCLHSH 475 (608)
T ss_pred HHHHHHHcCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHhc-cCeEEEEec-Cc-hhhHHHHHHHHhhcCCCCeE
Confidence 45578889986442 233344453 222 233556777776 333 467887754 22 23345555554432101233
Q ss_pred EEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccc------------------cceeccCC
Q 009217 416 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR------------------HFAEFDHE 477 (540)
Q Consensus 416 f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~------------------e~v~~~~~ 477 (540)
+.. ++...+++++||+.+..| |.+.+|++.+|+|.|+.-. .+.+. .++....-
T Consensus 476 ii~---~~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~PmVV~YK-~s~Lty~Iak~Lvki~i~yIsLpNIIagr~V 546 (608)
T PRK01021 476 IVP---SQFRYELMRECDCALAKC-----GTIVLETALNQTPTIVTCQ-LRPFDTFLAKYIFKIILPAYSLPNIILGSTI 546 (608)
T ss_pred Eec---CcchHHHHHhcCeeeecC-----CHHHHHHHHhCCCEEEEEe-cCHHHHHHHHHHHhccCCeeehhHHhcCCCc
Confidence 332 112358899999999986 7999999999999887432 13222 12211000
Q ss_pred ccccceee--cCCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009217 478 STRFSRFI--SSTFGNISLSQALEEIKNNPLSWKRKIKDA 515 (540)
Q Consensus 478 ~~g~~G~l--~~~~d~~~la~ai~~l~~~~~~~~~~~~~a 515 (540)
-. =++ -+..+++.+++++ .+++|++.++++.++-
T Consensus 547 vP---EllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l 582 (608)
T PRK01021 547 FP---EFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDAC 582 (608)
T ss_pred ch---hhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 00 034 2466789999997 7778888777766543
No 129
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.10 E-value=0.00017 Score=73.31 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhc-CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCch
Q 009217 368 VFLENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQ 446 (540)
Q Consensus 368 KG~~~Li~A~~~l~~~-~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fgl 446 (540)
.....+.+++..+.+. ++++++.... .|...+.+.+...++ ++++++..........+++.|+++|-=| |
T Consensus 197 ~~~~~i~~~l~~L~~~~~~~vi~~~hn-~p~~~~~i~~~l~~~--~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s- 267 (346)
T PF02350_consen 197 ERLEQILEALKALAERQNVPVIFPLHN-NPRGSDIIIEKLKKY--DNVRLIEPLGYEEYLSLLKNADLVVGDS-----S- 267 (346)
T ss_dssp --HHHHHHHHHHHHHHTTEEEEEE--S--HHHHHHHHHHHTT---TTEEEE----HHHHHHHHHHESEEEESS-----H-
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecC-CchHHHHHHHHhccc--CCEEEECCCCHHHHHHHHhcceEEEEcC-----c-
Confidence 3456778888877764 8999998833 345556665555555 4899998888888889999999998765 3
Q ss_pred HHH-HHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHH
Q 009217 447 VPL-KALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDAD 525 (540)
Q Consensus 447 v~l-EAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~ 525 (540)
.+. ||..+|+|+|.-+. .|--++.+.. |.+ .++ +.+++++.++|.+++++++.+.++.. ...-|.=...
T Consensus 268 GI~eEa~~lg~P~v~iR~-~geRqe~r~~-----~~n-vlv-~~~~~~I~~ai~~~l~~~~~~~~~~~--~~npYgdG~a 337 (346)
T PF02350_consen 268 GIQEEAPSLGKPVVNIRD-SGERQEGRER-----GSN-VLV-GTDPEAIIQAIEKALSDKDFYRKLKN--RPNPYGDGNA 337 (346)
T ss_dssp HHHHHGGGGT--EEECSS-S-S-HHHHHT-----TSE-EEE-TSSHHHHHHHHHHHHH-HHHHHHHHC--S--TT-SS-H
T ss_pred cHHHHHHHhCCeEEEecC-CCCCHHHHhh-----cce-EEe-CCCHHHHHHHHHHHHhChHHHHhhcc--CCCCCCCCcH
Confidence 345 99999999999754 1333455542 333 345 47889999999999988666666542 1234555555
Q ss_pred HHHH
Q 009217 526 CNDI 529 (540)
Q Consensus 526 a~~~ 529 (540)
++++
T Consensus 338 s~rI 341 (346)
T PF02350_consen 338 SERI 341 (346)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00018 Score=74.47 Aligned_cols=180 Identities=12% Similarity=0.071 Sum_probs=121.8
Q ss_pred HHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEEe
Q 009217 344 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDS 419 (540)
Q Consensus 344 r~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~~ 419 (540)
|..+|+|.+ ..+++|.++..+. ...+.+-+-++++ ++-.|++.|.|+++...+.+++++++.+. +|.+|.+.
T Consensus 421 R~~lglp~~--avVf~c~~n~~K~--~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 421 RAQLGLPED--AVVFCCFNNYFKI--TPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred hhhcCCCCC--eEEEEecCCcccC--CHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC
Confidence 567899865 5667777776655 4467777666665 57788888867778889999999999884 89999998
Q ss_pred cChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc-cc-----cceeccCCccccceeecCCCCHHH
Q 009217 420 YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE-FR-----HFAEFDHESTRFSRFISSTFGNIS 493 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg-~~-----e~v~~~~~~~g~~G~l~~~~d~~~ 493 (540)
.+.+.-.+-|.-||+++=.--|-+ ..+.+||+-+|+||++. . |- +. .++.. .|.+-.+.+ +.++
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY~g-~TTa~daLwm~vPVlT~-~--G~~FasR~~~si~~~----agi~e~vA~--s~~d 566 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPYGG-HTTASDALWMGVPVLTR-V--GEQFASRNGASIATN----AGIPELVAD--SRAD 566 (620)
T ss_pred CCCHHHHHhhchhheeeecccCCC-ccchHHHHHhcCceeee-c--cHHHHHhhhHHHHHh----cCCchhhcC--CHHH
Confidence 887777788999999997665544 57889999999977764 3 21 00 01111 122222322 2234
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH---h--ccCChHHHHHHHHHHHHHHHh
Q 009217 494 LSQALEEIKNNPLSWKRKIKDAM---L--QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 494 la~ai~~l~~~~~~~~~~~~~a~---~--~~fsw~~~a~~~y~~lY~~l~ 538 (540)
..+.-..+-+|..++++.+..-. . .-|+-+..++++ +++|..+-
T Consensus 567 YV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~l-e~~y~~M~ 615 (620)
T COG3914 567 YVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKL-ETLYWGMW 615 (620)
T ss_pred HHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHH-HHHHHHHH
Confidence 33333344456666655543222 1 368899999996 99998763
No 131
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.03 E-value=0.0011 Score=66.76 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=53.2
Q ss_pred CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--CCccccceeecCCC
Q 009217 412 GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--HESTRFSRFISSTF 489 (540)
Q Consensus 412 ~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--~~~~g~~G~l~~~~ 489 (540)
+++.+.+ +..+....+++.||++|.-+-+ .++.||+++|+|+|+... .+..|..... .+..|. |...+..
T Consensus 229 ~~v~~~~-~~~~~~~~~l~~ad~vI~~~G~----~t~~Ea~~~g~P~l~ip~--~~~~eQ~~na~~l~~~g~-~~~l~~~ 300 (321)
T TIGR00661 229 ENVEIRR-ITTDNFKELIKNAELVITHGGF----SLISEALSLGKPLIVIPD--LGQFEQGNNAVKLEDLGC-GIALEYK 300 (321)
T ss_pred CCEEEEE-CChHHHHHHHHhCCEEEECCCh----HHHHHHHHcCCCEEEEcC--CCcccHHHHHHHHHHCCC-EEEcChh
Confidence 6888774 5444567889999999998754 368999999999999876 4544432100 001232 4566666
Q ss_pred CHHHHHHHHHHHhcCH
Q 009217 490 GNISLSQALEEIKNNP 505 (540)
Q Consensus 490 d~~~la~ai~~l~~~~ 505 (540)
+. ++.+++...++|+
T Consensus 301 ~~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 301 EL-RLLEAILDIRNMK 315 (321)
T ss_pred hH-HHHHHHHhccccc
Confidence 55 4444554444443
No 132
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.90 E-value=0.0029 Score=65.79 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=95.2
Q ss_pred CceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 354 STIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 354 ~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
+.++++..|..... .+++-.+++.+.+.++++++.. ++.. ..+ ...+ +|+.....++.. +++..||
T Consensus 237 ~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~-~~~~---~~~----~~~p-~n~~v~~~~p~~---~~l~~ad 302 (406)
T COG1819 237 RPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSL-GGAR---DTL----VNVP-DNVIVADYVPQL---ELLPRAD 302 (406)
T ss_pred CCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEec-cccc---ccc----ccCC-CceEEecCCCHH---HHhhhcC
Confidence 34566667776655 4444444444445689998876 3211 011 1122 688766555544 4789999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec----cCCccccceeecC--CCCHHHHHHHHHHHhcCHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF----DHESTRFSRFISS--TFGNISLSQALEEIKNNPLS 507 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~----~~~~~g~~G~l~~--~~d~~~la~ai~~l~~~~~~ 507 (540)
++|...- + -+..||+.+|+|.|+-.. + .|.... +..|. |...+ .-.++.|+++|.++++|+..
T Consensus 303 ~vI~hGG---~-gtt~eaL~~gvP~vv~P~--~--~DQ~~nA~rve~~G~---G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 303 AVIHHGG---A-GTTSEALYAGVPLVVIPD--G--ADQPLNAERVEELGA---GIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred EEEecCC---c-chHHHHHHcCCCEEEecC--C--cchhHHHHHHHHcCC---ceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 9999864 2 467999999999999754 2 333111 11223 34444 57789999999999999887
Q ss_pred HHHHHHHH--HhccCChHHHHHHHHHHHHH
Q 009217 508 WKRKIKDA--MLQDFSWDADCNDIHISAYT 535 (540)
Q Consensus 508 ~~~~~~~a--~~~~fsw~~~a~~~y~~lY~ 535 (540)
++...+-. +.+.-.-..+++.+ ++...
T Consensus 372 ~~~~~~~~~~~~~~~g~~~~a~~l-e~~~~ 400 (406)
T COG1819 372 RRAAERLAEEFKEEDGPAKAADLL-EEFAR 400 (406)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHH-HHHHh
Confidence 76654432 22444544455553 55444
No 133
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=0.0018 Score=65.41 Aligned_cols=213 Identities=15% Similarity=0.086 Sum_probs=133.2
Q ss_pred hhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC-CCCCCCCCCCCcccccccCcccccCcHHH
Q 009217 261 NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG-FDSSTWDPSNDKFLTENYCAEDMKGKTVC 339 (540)
Q Consensus 261 ~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG-vd~~~~~p~~~~~l~~~~~~~~~~~k~~~ 339 (540)
.+.+..++.-|.|++-|+..++.... +| ..++.+.-|- .|++ |. + .....
T Consensus 169 ~~~~~~~~~i~li~aQse~D~~Rf~~--LG----------a~~v~v~GNlKfd~~---~~--~------------~~~~~ 219 (419)
T COG1519 169 FLARLLFKNIDLILAQSEEDAQRFRS--LG----------AKPVVVTGNLKFDIE---PP--P------------QLAAE 219 (419)
T ss_pred HHHHHHHHhcceeeecCHHHHHHHHh--cC----------CcceEEecceeecCC---CC--h------------hhHHH
Confidence 45566778889999999887776543 23 1224443332 1111 11 0 01224
Q ss_pred HHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc--CcEEEEEecCCChhHHHHHHHHHHHhCC------
Q 009217 340 KVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQEELKD------ 411 (540)
Q Consensus 340 ~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~--~~~lvi~G~g~~~~~~~~l~~l~~~~~~------ 411 (540)
.+.+|.+++.+ ++++++.+....+ -+.+++++..+++. +..++++=-- |+-...+++++++.+.
T Consensus 220 ~~~~r~~l~~~----r~v~iaaSTH~GE--eei~l~~~~~l~~~~~~~llIlVPRH--pERf~~v~~l~~~~gl~~~~rS 291 (419)
T COG1519 220 LAALRRQLGGH----RPVWVAASTHEGE--EEIILDAHQALKKQFPNLLLILVPRH--PERFKAVENLLKRKGLSVTRRS 291 (419)
T ss_pred HHHHHHhcCCC----CceEEEecCCCch--HHHHHHHHHHHHhhCCCceEEEecCC--hhhHHHHHHHHHHcCCeEEeec
Confidence 55677777653 4677777774444 45789999998873 6777777643 4455667777776532
Q ss_pred --------CcEEEEEecChHHHHHHHhcCCEEEEC-CCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccc
Q 009217 412 --------GIVIFVDSYDDALLHLIFSGSDIILCH-SFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFS 482 (540)
Q Consensus 412 --------~~v~f~~~~~~~~~~~~~~~aDi~v~P-S~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~ 482 (540)
.+|.+.. .--++..+|+.||+.++- |.-+--|-..||+.++|+|+|.-.. .-...|+.+.-. ..|.
T Consensus 292 ~~~~~~~~tdV~l~D--tmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~-~~Nf~ei~~~l~-~~ga- 366 (419)
T COG1519 292 QGDPPFSDTDVLLGD--TMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPY-TFNFSDIAERLL-QAGA- 366 (419)
T ss_pred CCCCCCCCCcEEEEe--cHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCc-cccHHHHHHHHH-hcCC-
Confidence 1222211 123567899999996665 7766668899999999999998432 122334432111 1121
Q ss_pred eeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 009217 483 RFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 483 G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
++.++. .+.|++++..+++|++.++++++++.+
T Consensus 367 ~~~v~~--~~~l~~~v~~l~~~~~~r~~~~~~~~~ 399 (419)
T COG1519 367 GLQVED--ADLLAKAVELLLADEDKREAYGRAGLE 399 (419)
T ss_pred eEEECC--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355543 778999999999999999999988864
No 134
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.71 E-value=0.0094 Score=63.84 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=79.5
Q ss_pred eEEEEEeccccc-----CCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH-
Q 009217 356 IVVGCIFSDVSD-----VFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF- 429 (540)
Q Consensus 356 ~lv~~vgrl~~~-----KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~- 429 (540)
++++..|..... +-+..+++|++.+ +.++++...+... . ...+ +||.+....+.. +++
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---~~~viw~~~~~~~---~------~~~p-~Nv~i~~w~Pq~---~lL~ 361 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---PYNVLWKYDGEVE---A------INLP-ANVLTQKWFPQR---AVLK 361 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhC---CCeEEEEECCCcC---c------ccCC-CceEEecCCCHH---HHhc
Confidence 566677776432 2233444554443 5677765533211 0 1233 789877777765 356
Q ss_pred -hcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC--CccccceeecC--CCCHHHHHHHHHHHhcC
Q 009217 430 -SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH--ESTRFSRFISS--TFGNISLSQALEEIKNN 504 (540)
Q Consensus 430 -~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~--~~~g~~G~l~~--~~d~~~la~ai~~l~~~ 504 (540)
..+++||.- +-..+..||+.+|+|.|+... ..|...... +..|. |...+ ..++++|.+||.++++|
T Consensus 362 hp~v~~fItH----GG~~s~~Eal~~GvP~v~iP~----~~DQ~~Na~rv~~~G~-G~~l~~~~~t~~~l~~ai~~vl~~ 432 (507)
T PHA03392 362 HKNVKAFVTQ----GGVQSTDEAIDALVPMVGLPM----MGDQFYNTNKYVELGI-GRALDTVTVSAAQLVLAIVDVIEN 432 (507)
T ss_pred CCCCCEEEec----CCcccHHHHHHcCCCEEECCC----CccHHHHHHHHHHcCc-EEEeccCCcCHHHHHHHHHHHhCC
Confidence 558999864 334578999999999999654 334322100 01232 34444 34578999999999999
Q ss_pred HHHHHHHHH
Q 009217 505 PLSWKRKIK 513 (540)
Q Consensus 505 ~~~~~~~~~ 513 (540)
|..++...+
T Consensus 433 ~~y~~~a~~ 441 (507)
T PHA03392 433 PKYRKNLKE 441 (507)
T ss_pred HHHHHHHHH
Confidence 876665543
No 135
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.48 E-value=0.0018 Score=58.08 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=71.0
Q ss_pred CeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH---HHHcCCCCCEEEEcC-CchhhHHHHHHHHHhhcCCC
Q 009217 138 GIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDY---IVKSRKQPDVLHIHN-WETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 138 gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~---~~~~~~~pDIIH~h~-~~~~~~~~~~~~~~~~~~~~ 213 (540)
||++....+.. -.....+.|..+++....-..++++. +++.++.||||.+|. |-.+ .+++.. +.
T Consensus 20 GV~~~~y~~~~----~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GWGe~---Lflkdv-----~P 87 (171)
T PF12000_consen 20 GVRVVRYRPPR----GPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGWGET---LFLKDV-----FP 87 (171)
T ss_pred CcEEEEeCCCC----CCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCcchh---hhHHHh-----CC
Confidence 66666654311 01123344444555443333444333 344589999999997 6443 345665 36
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccch-hhhHHHhhccceeeccccchhhhhhcccCCC
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVN-ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHG 292 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~g 292 (540)
++|++.-+= +.|...- ...|.+++.-...+..... +..| .....+..||..++.+...++.. +.
T Consensus 88 ~a~li~Y~E-~~y~~~g-----~d~~FDpe~p~~~~~~~~~---r~rN~~~l~~l~~~D~~isPT~wQ~~~f--P~---- 152 (171)
T PF12000_consen 88 DAPLIGYFE-FYYRASG-----ADVGFDPEFPPSLDDRARL---RMRNAHNLLALEQADAGISPTRWQRSQF--PA---- 152 (171)
T ss_pred CCcEEEEEE-EEecCCC-----CcCCCCCCCCCCHHHHHHH---HHHhHHHHHHHHhCCcCcCCCHHHHHhC--CH----
Confidence 788776542 1111000 0112222210000000000 0111 23345677898887776544321 11
Q ss_pred chHHhhhccCceEEeccCCCCCCC
Q 009217 293 LESTLAIHQDKLLVAPCGFDSSTW 316 (540)
Q Consensus 293 l~~~l~~~~~ki~vI~nGvd~~~~ 316 (540)
. -..||.||+-|||++.+
T Consensus 153 ---~---~r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 153 ---E---FRSKISVIHDGIDTDRF 170 (171)
T ss_pred ---H---HHcCcEEeecccchhhc
Confidence 1 24799999999998754
No 136
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.40 E-value=0.15 Score=49.62 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=73.2
Q ss_pred HHHHHhCCCCCCCceEEE----EEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEE
Q 009217 342 TLQQQLGLSKDASTIVVG----CIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFV 417 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~----~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~ 417 (540)
++.+++|+..+....++= ...-....+|.+.+.++++.+.+.+ .+++- .. ++.++.-+++ ++++.-
T Consensus 171 evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g--iV~ip-r~-----~~~~eife~~--~n~i~p 240 (346)
T COG1817 171 EVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG--IVLIP-RE-----KEQAEIFEGY--RNIIIP 240 (346)
T ss_pred HHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc--EEEec-Cc-----hhHHHHHhhh--ccccCC
Confidence 456789997653221111 1122345677777888888887655 34443 21 2233344444 333322
Q ss_pred EecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHH
Q 009217 418 DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQA 497 (540)
Q Consensus 418 ~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~a 497 (540)
....+... .+ --|++++-. -|...-||...|+|.|.+.- |-+- -|+...... |.++...|+.+....
T Consensus 241 k~~vD~l~-Ll-yya~lvig~-----ggTMarEaAlLGtpaIs~~p--Gkll-~vdk~lie~---G~~~~s~~~~~~~~~ 307 (346)
T COG1817 241 KKAVDTLS-LL-YYATLVIGA-----GGTMAREAALLGTPAISCYP--GKLL-AVDKYLIEK---GLLYHSTDEIAIVEY 307 (346)
T ss_pred cccccHHH-HH-hhhheeecC-----CchHHHHHHHhCCceEEecC--Cccc-cccHHHHhc---CceeecCCHHHHHHH
Confidence 22222332 22 236777654 35778899999999999875 3221 121110012 467776776544444
Q ss_pred HHHHhcCH
Q 009217 498 LEEIKNNP 505 (540)
Q Consensus 498 i~~l~~~~ 505 (540)
..+.+.++
T Consensus 308 a~~~l~~~ 315 (346)
T COG1817 308 AVRNLKYR 315 (346)
T ss_pred HHHHhhch
Confidence 44444444
No 137
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.31 E-value=0.0057 Score=63.52 Aligned_cols=155 Identities=14% Similarity=0.030 Sum_probs=87.1
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEE-EecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi-~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
.++++..|.....+. ..+-+++..+.+.+.++++ .|.+.+ .+.++ .++ ++|.+.+..+.. ++++.||
T Consensus 226 ~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~g~~~~---~~~~~----~~~-~~v~~~~~~p~~---~ll~~~~ 293 (392)
T TIGR01426 226 PVVLISLGTVFNNQP-SFYRTCVEAFRDLDWHVVLSVGRGVD---PADLG----ELP-PNVEVRQWVPQL---EILKKAD 293 (392)
T ss_pred CEEEEecCccCCCCH-HHHHHHHHHHhcCCCeEEEEECCCCC---hhHhc----cCC-CCeEEeCCCCHH---HHHhhCC
Confidence 356667788644332 2333344444445667665 453322 11221 233 688877555543 5789999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecC--CCCHHHHHHHHHHHhcCHHHHHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISS--TFGNISLSQALEEIKNNPLSWKRK 511 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~--~~d~~~la~ai~~l~~~~~~~~~~ 511 (540)
++|..+-+ .+.+||+++|+|.|+... .+-...........|. |..++ ..++++|+++|.++++|++.++++
T Consensus 294 ~~I~hgG~----~t~~Eal~~G~P~v~~p~--~~dq~~~a~~l~~~g~-g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~ 366 (392)
T TIGR01426 294 AFITHGGM----NSTMEALFNGVPMVAVPQ--GADQPMTARRIAELGL-GRHLPPEEVTAEKLREAVLAVLSDPRYAERL 366 (392)
T ss_pred EEEECCCc----hHHHHHHHhCCCEEecCC--cccHHHHHHHHHHCCC-EEEeccccCCHHHHHHHHHHHhcCHHHHHHH
Confidence 99987642 368999999999999765 3211111000000122 23343 345789999999999999866554
Q ss_pred HHHHH--hccCChHHHHHH
Q 009217 512 IKDAM--LQDFSWDADCND 528 (540)
Q Consensus 512 ~~~a~--~~~fsw~~~a~~ 528 (540)
.+-+. ...-.-+..++.
T Consensus 367 ~~l~~~~~~~~~~~~aa~~ 385 (392)
T TIGR01426 367 RKMRAEIREAGGARRAADE 385 (392)
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 33221 133344555554
No 138
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.073 Score=53.59 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=98.4
Q ss_pred cccccCCHHHHHHHHHHHHhc--CcEEEEEecCCChhHHHHHHHHH-HHhCC-CcEEEEEecChHHHHHHHhcCCEEEEC
Q 009217 363 SDVSDVFLENLKAVVRGAKMR--GIQFVFTGTNKLPSASRALVSFQ-EELKD-GIVIFVDSYDDALLHLIFSGSDIILCH 438 (540)
Q Consensus 363 rl~~~KG~~~Li~A~~~l~~~--~~~lvi~G~g~~~~~~~~l~~l~-~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~P 438 (540)
|-.-.+++..+.+|+.++.+. +.+++.-= -+.|. ++++. ..++. ++|+++.+++-.....++..|-+.+-=
T Consensus 214 reN~~~~~~~i~~al~~i~~~~~~~~viyp~-H~~~~----v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltD 288 (383)
T COG0381 214 RENVGEPLEEICEALREIAEEYPDVIVIYPV-HPRPR----VRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTD 288 (383)
T ss_pred hhcccccHHHHHHHHHHHHHhCCCceEEEeC-CCChh----hhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEec
Confidence 344448899999999888863 56666544 33322 23333 34443 689999899888788888888555544
Q ss_pred CCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 009217 439 SFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQ 518 (540)
Q Consensus 439 S~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~ 518 (540)
| |-.+=||-..|+||++-+.. -.-+|.++. |. -.++ ..+.+.+.+++..++++++.+++|+... .
T Consensus 289 S-----GgiqEEAp~lg~Pvl~lR~~-TERPE~v~a-----gt-~~lv-g~~~~~i~~~~~~ll~~~~~~~~m~~~~--n 353 (383)
T COG0381 289 S-----GGIQEEAPSLGKPVLVLRDT-TERPEGVEA-----GT-NILV-GTDEENILDAATELLEDEEFYERMSNAK--N 353 (383)
T ss_pred C-----CchhhhHHhcCCcEEeeccC-CCCccceec-----Cc-eEEe-CccHHHHHHHHHHHhhChHHHHHHhccc--C
Confidence 4 44567999999999997652 233566652 32 1455 4456899999999999999999887532 4
Q ss_pred cCChHHHHHHH
Q 009217 519 DFSWDADCNDI 529 (540)
Q Consensus 519 ~fsw~~~a~~~ 529 (540)
.|.=.+.++++
T Consensus 354 pYgdg~as~rI 364 (383)
T COG0381 354 PYGDGNASERI 364 (383)
T ss_pred CCcCcchHHHH
Confidence 55555555553
No 139
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.95 E-value=0.36 Score=48.93 Aligned_cols=77 Identities=10% Similarity=0.040 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHH
Q 009217 370 LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPL 449 (540)
Q Consensus 370 ~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~l 449 (540)
+..+++|+.++.+...++++.|.. . . +.+++..++. ..+.+. + ....++++||+.+..| |.+.+
T Consensus 185 lP~~~~aa~~L~~~~~~~~i~~a~-~--~-~~i~~~~~~~--~~~~~~---~--~~~~~m~~aDlal~~S-----GT~TL 248 (347)
T PRK14089 185 MPIFKELAKKLEGKEKILVVPSFF-K--G-KDLKEIYGDI--SEFEIS---Y--DTHKALLEAEFAFICS-----GTATL 248 (347)
T ss_pred HHHHHHHHHHHhhcCcEEEEeCCC-c--H-HHHHHHHhcC--CCcEEe---c--cHHHHHHhhhHHHhcC-----cHHHH
Confidence 344558887777655677777733 1 2 4444443332 234444 2 2357899999999876 68889
Q ss_pred HHHhcCCceEEEe
Q 009217 450 KALKYGAAPIAVT 462 (540)
Q Consensus 450 EAma~G~pvI~~~ 462 (540)
|++.+|+|.|+.-
T Consensus 249 E~al~g~P~Vv~Y 261 (347)
T PRK14089 249 EAALIGTPFVLAY 261 (347)
T ss_pred HHHHhCCCEEEEE
Confidence 9999999988854
No 140
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.063 Score=53.61 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=108.7
Q ss_pred cCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHH
Q 009217 301 QDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGA 380 (540)
Q Consensus 301 ~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l 380 (540)
..+...+++++|.+.|+|.... ....-=+.++|...|. ..+.++++
T Consensus 160 ~~~~~~~~~a~d~~~~~~i~~d-----------------------------a~~~~dL~~ign~~pD-----r~e~~ke~ 205 (373)
T COG4641 160 ARNCYYLPWAVDDSLFHPIPPD-----------------------------ASYDVDLNLIGNPYPD-----RVEEIKEF 205 (373)
T ss_pred ccceeccCccCCchhcccCCcc-----------------------------ccceeeeEEecCCCcc-----HHHHHHHH
Confidence 4577889999999999876310 0001126677877766 34444444
Q ss_pred Hh-------cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHhcCCEEEECCC---CCCC---ch
Q 009217 381 KM-------RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDD-ALLHLIFSGSDIILCHSF---HDPL---LQ 446 (540)
Q Consensus 381 ~~-------~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~-~~~~~~~~~aDi~v~PS~---~E~f---gl 446 (540)
.- .+-++.+.|.+- ...+-. ... ..++...+.+.. +..+..++.-|+++.=++ -++. ..
T Consensus 206 ~~~ps~kl~v~rr~~~~g~~y----~~~~~~--~~~-~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~ 278 (373)
T COG4641 206 FVEPSFKLMVDRRFYVLGPRY----PDDIWG--RTW-EPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTN 278 (373)
T ss_pred hhccchhhhccceeeecCCcc----chhhhc--ccc-cchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchh
Confidence 31 135677777541 111110 000 023333444443 556677777777766543 2332 67
Q ss_pred HHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChH
Q 009217 447 VPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWD 523 (540)
Q Consensus 447 v~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~ 523 (540)
-+-|+++||.+-|.... -++.-.+. .|.. ++-..|..++.+.+..+++.++.++++++.+.+ .+|+.+
T Consensus 279 RvFeiagc~~~liT~~~--~~~e~~f~-----pgk~--~iv~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~ 349 (373)
T COG4641 279 RVFEIAGCGGFLITDYW--KDLEKFFK-----PGKD--IIVYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYE 349 (373)
T ss_pred hHHHHhhcCCccccccH--HHHHHhcC-----Cchh--eEEecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHH
Confidence 78999999997777655 44444454 2332 222567789999999999999999999988865 567777
Q ss_pred HHHHH
Q 009217 524 ADCND 528 (540)
Q Consensus 524 ~~a~~ 528 (540)
.-+..
T Consensus 350 ~r~~~ 354 (373)
T COG4641 350 ERIFK 354 (373)
T ss_pred HHHHH
Confidence 76655
No 141
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=96.07 E-value=1.5 Score=42.15 Aligned_cols=141 Identities=12% Similarity=0.013 Sum_probs=75.8
Q ss_pred EEEecccccCCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHH------H------HHHh-CCCcEEEEEecChHH
Q 009217 359 GCIFSDVSDVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVS------F------QEEL-KDGIVIFVDSYDDAL 424 (540)
Q Consensus 359 ~~vgrl~~~KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~------l------~~~~-~~~~v~f~~~~~~~~ 424 (540)
.|+||.+-.||+..+++.-+..++ .+..-++-|--..+....-++. . .... ++.-+..++.|-.++
T Consensus 187 ~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E 266 (355)
T PF11440_consen 187 RYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYIRSE 266 (355)
T ss_dssp EEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT--EEEE-CTGGGG---SSS--EEEESS--HHH
T ss_pred eeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCcccccCccccccCcccCCCCcceecchhhhHH
Confidence 799999999999999998887765 4677788774322222222211 0 0011 123477788888777
Q ss_pred HHHHHhcCCEEEECCC------CCCCchHHHHHHhcCCceEEEecCCCcccc-------ceeccCCccccceeecCCCCH
Q 009217 425 LHLIFSGSDIILCHSF------HDPLLQVPLKALKYGAAPIAVTSSDIEFRH-------FAEFDHESTRFSRFISSTFGN 491 (540)
Q Consensus 425 ~~~~~~~aDi~v~PS~------~E~fglv~lEAma~G~pvI~~~~~~gg~~e-------~v~~~~~~~g~~G~l~~~~d~ 491 (540)
..+.++.+-+...-|. .+.+-.+.+|..|||+.||--..- |..-- .++++ .| -+.++..|-
T Consensus 267 ~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~-GEN~r~~~D~~~~~~~~---~~--~I~~De~dl 340 (355)
T PF11440_consen 267 GLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSW-GENNRFTLDGTRYIDHP---YS--AIYFDENDL 340 (355)
T ss_dssp HHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHH-HHHSB-TTTSSBGGSS-----S---EEE-TTSH
T ss_pred HHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccc-cccceeeecCceeeccC---cc--eeEeccchH
Confidence 7788887766655442 356778999999999988875430 22111 12211 12 256777777
Q ss_pred HHHHHHHHHHhcCH
Q 009217 492 ISLSQALEEIKNNP 505 (540)
Q Consensus 492 ~~la~ai~~l~~~~ 505 (540)
++-.+.|.++.++.
T Consensus 341 e~T~ekl~E~a~~~ 354 (355)
T PF11440_consen 341 ESTVEKLIEVANNR 354 (355)
T ss_dssp HHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHhccC
Confidence 77777777776553
No 142
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=95.79 E-value=2.3 Score=42.32 Aligned_cols=139 Identities=11% Similarity=0.172 Sum_probs=75.1
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHh-cCc---EEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEEecChHHHHHHH
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKM-RGI---QFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYDDALLHLIF 429 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~-~~~---~lvi~G~g~~~~~~~~l~~l~~~~~-~~~v~f~~~~~~~~~~~~~ 429 (540)
..+++.+|- -+-|-+++..+++.... .++ -++|.|.- -| ++..+++...-+ .++|.++ .|+.+. ..++
T Consensus 220 ~~Ilvs~GG--G~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~-MP--~~~r~~l~~~A~~~p~i~I~-~f~~~~-~~ll 292 (400)
T COG4671 220 FDILVSVGG--GADGAELIETALAAAQLLAGLNHKWLIVTGPF-MP--EAQRQKLLASAPKRPHISIF-EFRNDF-ESLL 292 (400)
T ss_pred ceEEEecCC--ChhhHHHHHHHHHHhhhCCCCCcceEEEeCCC-CC--HHHHHHHHHhcccCCCeEEE-EhhhhH-HHHH
Confidence 355666654 23344444333332221 233 34555532 22 233344433322 2678755 566554 4788
Q ss_pred hcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccc-eeccC-CccccceeecC-CCCHHHHHHHHHHHhcCH
Q 009217 430 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHF-AEFDH-ESTRFSRFISS-TFGNISLSQALEEIKNNP 505 (540)
Q Consensus 430 ~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~-v~~~~-~~~g~~G~l~~-~~d~~~la~ai~~l~~~~ 505 (540)
++|+..|.=+-| .+..|-+++|+|.+.-....++- |. +.... +.-|.-..+-+ .-.++.|+++|...++-|
T Consensus 293 ~gA~~vVSm~GY----NTvCeILs~~k~aLivPr~~p~e-EQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 293 AGARLVVSMGGY----NTVCEILSFGKPALIVPRAAPRE-EQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred Hhhheeeecccc----hhhhHHHhCCCceEEeccCCCcH-HHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 999999966655 46789999999988865522332 32 32110 11233233333 345789999999887643
No 143
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=95.61 E-value=0.15 Score=49.84 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=36.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+|++|+...+|+. .||++.-+++|.++|-+.-+.|..|++.
T Consensus 1 ~~V~ll~EGtYPyv-~GGVSsW~~~LI~glpe~~F~v~~i~a~ 42 (268)
T PF11997_consen 1 MDVCLLTEGTYPYV-RGGVSSWVHQLIRGLPEHEFHVYAIGAN 42 (268)
T ss_pred CeEEEEecCcCCCC-CCchhHHHHHHHhcCCCceEEEEEEeCC
Confidence 89999999999985 7999999999999998866666666655
No 144
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=95.31 E-value=0.05 Score=42.36 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCC
Q 009217 183 RKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNL 224 (540)
Q Consensus 183 ~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~ 224 (540)
+++.||||.|...+.+..-.+. +++..+.|+|+|=|++
T Consensus 48 rE~I~IVHgH~a~S~l~hE~i~----hA~~mGlktVfTDHSL 85 (90)
T PF08288_consen 48 RERIDIVHGHQAFSTLCHEAIL----HARTMGLKTVFTDHSL 85 (90)
T ss_pred HcCeeEEEeehhhhHHHHHHHH----HHHhCCCcEEeecccc
Confidence 4789999999865554422221 1234799999999974
No 145
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=95.18 E-value=2.3 Score=47.25 Aligned_cols=186 Identities=8% Similarity=-0.027 Sum_probs=115.9
Q ss_pred cCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHH
Q 009217 301 QDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGA 380 (540)
Q Consensus 301 ~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l 380 (540)
...+..+|-|+|...|...... + + -.....+++..+ .+..+++++-|++.-||+..=+.|+.++
T Consensus 238 ~~~v~~~pigid~~r~v~~~~~--~--~-------~~~~~~ei~~~~-----~g~klilgvD~~d~~kg~~~Kl~a~e~~ 301 (732)
T KOG1050|consen 238 DVSVKALPIGIDVQRFVKLLEL--P--Y-------VGSKGMEIKEPF-----KGKKLILGVDRLDSIKGIQLKLLAFEQF 301 (732)
T ss_pred eeeeeecccccchHHhhccccc--h--h-------HHHHHHHHhhhc-----cCCceEecccccccccCchHHHHHHHHH
Confidence 3466778888887766432100 0 0 011233344433 2346888999999999998888899888
Q ss_pred Hhc------CcEEEEEecCC---ChhH---HHHHHHHHH----HhCC---CcEEEE-EecChHHHHHHHhcCCEEEECCC
Q 009217 381 KMR------GIQFVFTGTNK---LPSA---SRALVSFQE----ELKD---GIVIFV-DSYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 381 ~~~------~~~lvi~G~g~---~~~~---~~~l~~l~~----~~~~---~~v~f~-~~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
+.. .+.++.+..+. .+.+ ...+..... +++. ..|+++ -.++..++-++++.+|+++..|+
T Consensus 302 L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~ 381 (732)
T KOG1050|consen 302 LEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSW 381 (732)
T ss_pred HHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeeccc
Confidence 752 34444443221 1212 222222222 2221 345444 35677888899999999999999
Q ss_pred CCCCchHHHHHHhcC----CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009217 441 HDPLLQVPLKALKYG----AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRK 511 (540)
Q Consensus 441 ~E~fglv~lEAma~G----~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~ 511 (540)
-++..++.+|...|. .+-|.+.- -|..++.+ +|. .++.|-+.++++.+|...++.++.-.++
T Consensus 382 rdGmnl~~~e~i~~~~~~~~~lVlsef--~G~~~tl~-----d~a--ivvnpw~~~~~~~~i~~al~~s~~e~~~ 447 (732)
T KOG1050|consen 382 RDGMNLVFLEYILCQENKKSVLVLSEF--IGDDTTLE-----DAA--IVVNPWDGDEFAILISKALTMSDEEREL 447 (732)
T ss_pred ccccchhhhHHHHhhcccCCceEEeee--cccccccc-----ccC--EEECCcchHHHHHHHHHHhhcCHHHHhh
Confidence 999999999998774 34555554 44444543 232 6778888889999999888765544333
No 146
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.76 E-value=0.59 Score=47.25 Aligned_cols=114 Identities=12% Similarity=0.043 Sum_probs=72.0
Q ss_pred HHHHHHHHhCCCCCCCceEEEEEec-ccccCC--HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcE-
Q 009217 339 CKVTLQQQLGLSKDASTIVVGCIFS-DVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIV- 414 (540)
Q Consensus 339 ~~~~lr~~~gl~~~~~~~lv~~vgr-l~~~KG--~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v- 414 (540)
.++.+...+++..+ +..+++..|. ..+.|. .+...+.++.+.+.+.++++.| +++ ..+..+++.+..+ +++
T Consensus 160 ~~~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G-~~~--e~~~~~~i~~~~~-~~~~ 234 (334)
T TIGR02195 160 EQAAALAKFGLDTE-RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFG-SAK--DHPAGNEIEALLP-GELR 234 (334)
T ss_pred HHHHHHHHcCCCCC-CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEE-Chh--hHHHHHHHHHhCC-cccc
Confidence 34445566666432 2234455554 334444 4477777777766678999999 542 2344455555543 333
Q ss_pred EEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 415 IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 415 ~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
-+.+..+=.++..+++.||++|.... |.. --|-|.|+|+|+--
T Consensus 235 ~l~g~~sL~el~ali~~a~l~I~~DS----Gp~-HlAaA~~~P~i~lf 277 (334)
T TIGR02195 235 NLAGETSLDEAVDLIALAKAVVTNDS----GLM-HVAAALNRPLVALY 277 (334)
T ss_pred cCCCCCCHHHHHHHHHhCCEEEeeCC----HHH-HHHHHcCCCEEEEE
Confidence 24555666778899999999998854 333 45889999999863
No 147
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=94.48 E-value=1 Score=44.26 Aligned_cols=164 Identities=5% Similarity=-0.069 Sum_probs=98.5
Q ss_pred EEEEEecc-cccCCHHHHHHHHHHHHhcCcEEEEE-ecC-CChhHHHHHHHHHHHhCC-CcEEEEEe-cChHHHHHHHhc
Q 009217 357 VVGCIFSD-VSDVFLENLKAVVRGAKMRGIQFVFT-GTN-KLPSASRALVSFQEELKD-GIVIFVDS-YDDALLHLIFSG 431 (540)
Q Consensus 357 lv~~vgrl-~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g-~~~~~~~~l~~l~~~~~~-~~v~f~~~-~~~~~~~~~~~~ 431 (540)
+.+-+|.= ++--..-..++++.+....++++++- |-+ ++..+.+++++.+.++-. +++..+.. .+-++...+++.
T Consensus 147 ~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~ 226 (322)
T PRK02797 147 MTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQ 226 (322)
T ss_pred eEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHh
Confidence 33344542 33334555666665555568888773 431 246788888888887654 78886654 466778899999
Q ss_pred CCEEEECC-CCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHH
Q 009217 432 SDIILCHS-FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKR 510 (540)
Q Consensus 432 aDi~v~PS-~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~ 510 (540)
||+.++-- +.++.|...+ .+..|+||+.++. ..--.++.+ .|.. ++++..+ |..++.. +..++
T Consensus 227 ~Dl~~f~~~RQQgiGnl~l-Li~~G~~v~l~r~-n~fwqdl~e-----~gv~-Vlf~~d~---L~~~~v~-----e~~rq 290 (322)
T PRK02797 227 CDLGYFIFARQQGIGTLCL-LIQLGKPVVLSRD-NPFWQDLTE-----QGLP-VLFTGDD---LDEDIVR-----EAQRQ 290 (322)
T ss_pred CCEEEEeechhhHHhHHHH-HHHCCCcEEEecC-CchHHHHHh-----CCCe-EEecCCc---ccHHHHH-----HHHHH
Confidence 99999985 5899997654 8899999999865 111123222 2332 3343332 2211111 12223
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHHHH
Q 009217 511 KIKDAML-QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 511 ~~~~a~~-~~fsw~~~a~~~y~~lY~~l 537 (540)
+.....+ -.|+-+...+. +.+++...
T Consensus 291 l~~~dk~~I~Ff~pn~~~~-W~~~l~~~ 317 (322)
T PRK02797 291 LASVDKNIIAFFSPNYLQG-WRNALAIA 317 (322)
T ss_pred HHhhCcceeeecCHhHHHH-HHHHHHHh
Confidence 3332222 33999998888 48787654
No 148
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=94.33 E-value=0.65 Score=46.20 Aligned_cols=105 Identities=6% Similarity=-0.058 Sum_probs=71.8
Q ss_pred EEEEecc-cccCCHHHHHHHHHHHHhcCcEEEE-EecCC-ChhHHHHHHHHHHHhCC-CcEEEEE-ecChHHHHHHHhcC
Q 009217 358 VGCIFSD-VSDVFLENLKAVVRGAKMRGIQFVF-TGTNK-LPSASRALVSFQEELKD-GIVIFVD-SYDDALLHLIFSGS 432 (540)
Q Consensus 358 v~~vgrl-~~~KG~~~Li~A~~~l~~~~~~lvi-~G~g~-~~~~~~~l~~l~~~~~~-~~v~f~~-~~~~~~~~~~~~~a 432 (540)
-+-+|.= ++.-+.-.+++++......++++++ +|-|. +..+.+++++.++++-. +++..+. ..+-++..++++.|
T Consensus 187 tILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~c 266 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRC 266 (360)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhC
Confidence 3334442 3333344455555543335788777 45442 34678888888887633 6787654 55778888999999
Q ss_pred CEEEECCC-CCCCchHHHHHHhcCCceEEEec
Q 009217 433 DIILCHSF-HDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 433 Di~v~PS~-~E~fglv~lEAma~G~pvI~~~~ 463 (540)
|+.+++.. .++.|... -.+.+|+||+.++.
T Consensus 267 Dl~if~~~RQQgiGnI~-lLl~~G~~v~L~~~ 297 (360)
T PF07429_consen 267 DLGIFNHNRQQGIGNIC-LLLQLGKKVFLSRD 297 (360)
T ss_pred CEEEEeechhhhHhHHH-HHHHcCCeEEEecC
Confidence 99999985 89999754 48899999999876
No 149
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.07 E-value=0.97 Score=46.11 Aligned_cols=101 Identities=11% Similarity=0.016 Sum_probs=65.5
Q ss_pred eEEEEEecccccCC--HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCc-EEEEEecChHHHHHHHhcC
Q 009217 356 IVVGCIFSDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGI-VIFVDSYDDALLHLIFSGS 432 (540)
Q Consensus 356 ~lv~~vgrl~~~KG--~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~-v~f~~~~~~~~~~~~~~~a 432 (540)
.++++.|.-.+.|. .+...+.+..+.+.+.++++.| |+.....+..+++++.....+ +.+.|..+=.++..+++.|
T Consensus 185 ~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~g-gp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 263 (352)
T PRK10422 185 YVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTS-GPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHA 263 (352)
T ss_pred eEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEc-CCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhC
Confidence 45566665445554 4467777777766688999998 543222233455555432223 3345666777888999999
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
|++|.... |.. --|-|.|+|+|+--
T Consensus 264 ~l~v~nDS----Gp~-HlAaA~g~P~v~lf 288 (352)
T PRK10422 264 QLFIGVDS----APA-HIAAAVNTPLICLF 288 (352)
T ss_pred CEEEecCC----HHH-HHHHHcCCCEEEEE
Confidence 99998854 444 34779999999864
No 150
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=93.54 E-value=0.045 Score=49.30 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=54.5
Q ss_pred CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccc--cceecc----CCccccceee
Q 009217 412 GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR--HFAEFD----HESTRFSRFI 485 (540)
Q Consensus 412 ~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~--e~v~~~----~~~~g~~G~l 485 (540)
.+|.++ ++.++ +..+++.||++|.-+ -+.++.|++++|+|.|+-.. .+.. +...+. ..+.+. .+.
T Consensus 55 ~~v~~~-~~~~~-m~~~m~~aDlvIs~a----G~~Ti~E~l~~g~P~I~ip~--~~~~~~~q~~na~~~~~~g~~~-~~~ 125 (167)
T PF04101_consen 55 PNVKVF-GFVDN-MAELMAAADLVISHA----GAGTIAEALALGKPAIVIPL--PGAADNHQEENAKELAKKGAAI-MLD 125 (167)
T ss_dssp CCCEEE-CSSSS-HHHHHHHHSEEEECS-----CHHHHHHHHCT--EEEE----TTT-T-CHHHHHHHHHHCCCCC-CSE
T ss_pred CcEEEE-echhh-HHHHHHHcCEEEeCC----CccHHHHHHHcCCCeeccCC--CCcchHHHHHHHHHHHHcCCcc-ccC
Confidence 467765 44433 568999999999743 24789999999999988655 3311 111110 011121 122
Q ss_pred cCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 009217 486 SSTFGNISLSQALEEIKNNPLSWKRKIKD 514 (540)
Q Consensus 486 ~~~~d~~~la~ai~~l~~~~~~~~~~~~~ 514 (540)
....+++.|.++|..+++++....++.++
T Consensus 126 ~~~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 126 ESELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp CCC-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred cccCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 22333678999999999999876666554
No 151
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=93.44 E-value=7.5 Score=37.21 Aligned_cols=104 Identities=11% Similarity=0.083 Sum_probs=60.1
Q ss_pred CceEEEEEecccccCCH-----HHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHH-hCCCcEEEEEec--ChHH
Q 009217 354 STIVVGCIFSDVSDVFL-----ENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEE-LKDGIVIFVDSY--DDAL 424 (540)
Q Consensus 354 ~~~lv~~vgrl~~~KG~-----~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~-~~~~~v~f~~~~--~~~~ 424 (540)
+..+-+++|.-.++=.. +.+..++.+..+ .++.|++-=+.-.|+ ..+++.+. ++..-..+...- ...-
T Consensus 161 rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~---~~~s~l~~~l~s~~~i~w~~~d~g~NP 237 (329)
T COG3660 161 RQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPD---TVKSILKNNLNSSPGIVWNNEDTGYNP 237 (329)
T ss_pred CceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcH---HHHHHHHhccccCceeEeCCCCCCCCc
Confidence 44666778765544322 334444444333 578888876543332 33333333 322334444433 2345
Q ss_pred HHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 425 LHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 425 ~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
...++++||.++..--.=. ..-||.+.|+||-+...
T Consensus 238 Y~~~La~Adyii~TaDSin---M~sEAasTgkPv~~~~~ 273 (329)
T COG3660 238 YIDMLAAADYIISTADSIN---MCSEAASTGKPVFILEP 273 (329)
T ss_pred hHHHHhhcceEEEecchhh---hhHHHhccCCCeEEEec
Confidence 5689999999998744322 24699999999988765
No 152
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.34 E-value=4.6 Score=40.36 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=58.5
Q ss_pred HHHHHHHHHHh-cCcEEEEEecCCCh-hHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHH
Q 009217 372 NLKAVVRGAKM-RGIQFVFTGTNKLP-SASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPL 449 (540)
Q Consensus 372 ~Li~A~~~l~~-~~~~lvi~G~g~~~-~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~l 449 (540)
.|++.+..+.+ .+..+.|..+.-.| +..+.|++..+. ...+.++.+-+++-+..+++.||.+++..-.-. -+-
T Consensus 169 ~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~--~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvS---Mvs 243 (311)
T PF06258_consen 169 RLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKD--NPGVYIWDGTGENPYLGFLAAADAIVVTEDSVS---MVS 243 (311)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcC--CCceEEecCCCCCcHHHHHHhCCEEEEcCccHH---HHH
Confidence 45555555554 46789998864332 344445444432 256755655556667789999999999865333 357
Q ss_pred HHHhcCCceEEEec
Q 009217 450 KALKYGAAPIAVTS 463 (540)
Q Consensus 450 EAma~G~pvI~~~~ 463 (540)
||.+.|+||.+...
T Consensus 244 EA~~tG~pV~v~~l 257 (311)
T PF06258_consen 244 EAAATGKPVYVLPL 257 (311)
T ss_pred HHHHcCCCEEEecC
Confidence 99999999999877
No 153
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=93.27 E-value=2.2 Score=43.82 Aligned_cols=216 Identities=15% Similarity=0.192 Sum_probs=97.0
Q ss_pred hHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHH
Q 009217 264 KGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTL 343 (540)
Q Consensus 264 ~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~l 343 (540)
.......|.+++.|+...+ +....++. ..+++ +..|. |..|..... ....+..+
T Consensus 129 ~~~~~~~d~~~~~s~~~~~-~~~~~f~~--------~~~~i--~~~G~------PR~D~l~~~---------~~~~~~~i 182 (369)
T PF04464_consen 129 KRNYRNYDYFIVSSEFEKE-IFKKAFGY--------PEDKI--LVTGY------PRNDYLFNK---------SKENRNRI 182 (369)
T ss_dssp HHHHTT-SEEEESSHHHHH-HHHHHTT----------GGGE--EES--------GGGHHHHHS---------TT-HHHHH
T ss_pred hhhccCCcEEEECCHHHHH-HHHHHhcc--------CcceE--EEeCC------CeEhHHhcc---------CHHHHHHH
Confidence 3345677888888776554 33333331 33444 44564 333332221 11235678
Q ss_pred HHHhCCCCCCCceEEEEEecccccCCH------H--HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEE
Q 009217 344 QQQLGLSKDASTIVVGCIFSDVSDVFL------E--NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI 415 (540)
Q Consensus 344 r~~~gl~~~~~~~lv~~vgrl~~~KG~------~--~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~ 415 (540)
++.++++.+ ..+|+|+=.+.....- . .-.+.+..+.+.++.+++-. .|........... . .++|.
T Consensus 183 ~~~~~~~~~--~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~---Hp~~~~~~~~~~~-~-~~~i~ 255 (369)
T PF04464_consen 183 KKKLGIDKD--KKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKP---HPNMKKKFKDFKE-D-NSNII 255 (369)
T ss_dssp HHHTT--SS---EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE-----SHHHHTT----TT---TTTEE
T ss_pred HHHhccCCC--CcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEe---Cchhhhchhhhhc-c-CCcEE
Confidence 888888754 4577777443322221 1 12233333444677777766 2333333322211 1 26777
Q ss_pred EEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecC--------
Q 009217 416 FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISS-------- 487 (540)
Q Consensus 416 f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~-------- 487 (540)
++... ..+..++..||++|.= + +=+..|++.+++|+|-..- ...+.-.. . |+.++
T Consensus 256 ~~~~~--~~~~~ll~~aDiLITD--y---SSi~fD~~~l~KPiify~~---D~~~Y~~~----r---g~~~~~~~~~pg~ 318 (369)
T PF04464_consen 256 FVSDN--EDIYDLLAAADILITD--Y---SSIIFDFLLLNKPIIFYQP---DLEEYEKE----R---GFYFDYEEDLPGP 318 (369)
T ss_dssp E-TT---S-HHHHHHT-SEEEES--S----THHHHHGGGT--EEEE-T---TTTTTTTT----S---SBSS-TTTSSSS-
T ss_pred ECCCC--CCHHHHHHhcCEEEEe--c---hhHHHHHHHhCCCEEEEec---cHHHHhhc----c---CCCCchHhhCCCc
Confidence 65322 2466889999999953 2 2368999999999987543 11222110 0 12211
Q ss_pred -CCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHH
Q 009217 488 -TFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDI 529 (540)
Q Consensus 488 -~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~ 529 (540)
..+.++|.++|..++++++...+..+.-.. -.|.=.+.++++
T Consensus 319 ~~~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri 363 (369)
T PF04464_consen 319 IVYNFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERI 363 (369)
T ss_dssp EESSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHH
T ss_pred eeCCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 134579999999987766554433333222 223334555553
No 154
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=93.08 E-value=1.7 Score=44.21 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=64.8
Q ss_pred eEEEEEecccccCC--HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEE-EEEecChHHHHHHHhcC
Q 009217 356 IVVGCIFSDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI-FVDSYDDALLHLIFSGS 432 (540)
Q Consensus 356 ~lv~~vgrl~~~KG--~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~-f~~~~~~~~~~~~~~~a 432 (540)
.+++..|.-.+.|. .+...+.+..+.+.+.+++++| |+.+...+..+++.+..+..++. +.|..+=.++..+++.|
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g-~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 261 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTS-GPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHA 261 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEec-CCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhC
Confidence 34455554334443 4566677767666688999999 54322233345555544323343 45666777888999999
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
|++|.... |.. --|-|.|+|+|+--
T Consensus 262 ~l~Vs~DS----Gp~-HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 262 RLFIGVDS----VPM-HMAAALGTPLVALF 286 (344)
T ss_pred CEEEecCC----HHH-HHHHHcCCCEEEEE
Confidence 99998843 333 45889999999863
No 155
>PLN02448 UDP-glycosyltransferase family protein
Probab=92.66 E-value=1.8 Score=45.99 Aligned_cols=130 Identities=12% Similarity=0.158 Sum_probs=71.2
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
..+++..|..... ..+.+-+.+..+...+..|+++..++ ...+. +..+ +++.+.+..++. ++++.+++
T Consensus 275 ~vvyvsfGs~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~----~~~~~---~~~~-~~~~v~~w~pQ~---~iL~h~~v 342 (459)
T PLN02448 275 SVLYVSLGSFLSV-SSAQMDEIAAGLRDSGVRFLWVARGE----ASRLK---EICG-DMGLVVPWCDQL---KVLCHSSV 342 (459)
T ss_pred ceEEEeecccccC-CHHHHHHHHHHHHhCCCCEEEEEcCc----hhhHh---Hhcc-CCEEEeccCCHH---HHhccCcc
Confidence 3556666766432 23444444444445678888766332 11222 2122 466666555654 35666665
Q ss_pred --EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCccccceeec-----CCCCHHHHHHHHHHHh
Q 009217 435 --ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHESTRFSRFIS-----STFGNISLSQALEEIK 502 (540)
Q Consensus 435 --~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~g~~G~l~-----~~~d~~~la~ai~~l~ 502 (540)
||.-. --.+.+||+++|+|.|+-.. . .|.... +.-+.|. ++.. +..+.+++++++.+++
T Consensus 343 ~~fvtHg----G~nS~~eal~~GvP~l~~P~--~--~DQ~~na~~v~~~~g~G~-~~~~~~~~~~~~~~~~l~~av~~vl 413 (459)
T PLN02448 343 GGFWTHC----GWNSTLEAVFAGVPMLTFPL--F--WDQPLNSKLIVEDWKIGW-RVKREVGEETLVGREEIAELVKRFM 413 (459)
T ss_pred ceEEecC----chhHHHHHHHcCCCEEeccc--c--ccchhhHHHHHHHhCceE-EEecccccCCcCcHHHHHHHHHHHh
Confidence 55332 22578999999999999655 2 222110 0001232 1111 1246789999999999
Q ss_pred cCH
Q 009217 503 NNP 505 (540)
Q Consensus 503 ~~~ 505 (540)
.++
T Consensus 414 ~~~ 416 (459)
T PLN02448 414 DLE 416 (459)
T ss_pred cCC
Confidence 864
No 156
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.45 E-value=0.33 Score=39.33 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=52.8
Q ss_pred EEEEecCCChhHHHHHHHHHHHhCCCcEEEE---EecChHH--HHHHHhcCCEEEECCC---CCCCchHHHHHHhcCCce
Q 009217 387 FVFTGTNKLPSASRALVSFQEELKDGIVIFV---DSYDDAL--LHLIFSGSDIILCHSF---HDPLLQVPLKALKYGAAP 458 (540)
Q Consensus 387 lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~---~~~~~~~--~~~~~~~aDi~v~PS~---~E~fglv~lEAma~G~pv 458 (540)
++|+| |- +.....+++..++++. ...++ ++..+.. ++..+..||+.|++.- +...-.+--+|-.+|+|+
T Consensus 2 vliVG-G~-~~~~~~~~~~~~~~G~-~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 2 VLIVG-GR-EDRERRYKRILEKYGG-KLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred EEEEc-CC-cccHHHHHHHHHHcCC-EEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcE
Confidence 56778 52 2357788888888863 44445 4444444 7788899999999975 455556667888999999
Q ss_pred EEEec
Q 009217 459 IAVTS 463 (540)
Q Consensus 459 I~~~~ 463 (540)
+-++.
T Consensus 79 ~~~~~ 83 (97)
T PF10087_consen 79 IYSRS 83 (97)
T ss_pred EEECC
Confidence 99875
No 157
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.86 E-value=1.6 Score=42.80 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=60.5
Q ss_pred ccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCC
Q 009217 366 SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPL 444 (540)
Q Consensus 366 ~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~f 444 (540)
+.-..+...+.++.+.+.+.++++.| +++ ..+..+++.+.++. ..+.+.+..+-.+...+++.||++|.+..
T Consensus 135 k~w~~~~~~~l~~~l~~~~~~ivl~g-~~~--e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds---- 207 (279)
T cd03789 135 KRWPAERFAALADRLLARGARVVLTG-GPA--ERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS---- 207 (279)
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEe-chh--hHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC----
Confidence 33445678888888876789999999 432 34455555555422 23334555566777899999999999853
Q ss_pred chHHHHHHhcCCceEEEe
Q 009217 445 LQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 445 glv~lEAma~G~pvI~~~ 462 (540)
|.+-| |.+.|+|.|+--
T Consensus 208 g~~Hl-A~a~~~p~i~l~ 224 (279)
T cd03789 208 GPMHL-AAALGTPTVALF 224 (279)
T ss_pred HHHHH-HHHcCCCEEEEE
Confidence 55555 568999998864
No 158
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=91.83 E-value=1.1 Score=42.90 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=58.1
Q ss_pred ceEEEEEecccccCC--HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcC
Q 009217 355 TIVVGCIFSDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 432 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG--~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~a 432 (540)
..++++.|.-.+.|. .+...+.+..+.+...++++.| ++.....+..+.+.+..+...+.+.+..+=.++..+++.|
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a 184 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLG-GPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRA 184 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE---SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTS
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEc-cchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcC
Confidence 345555555445555 4447777777766668899999 4322123344444444321245555555667778999999
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
|++|.+-- |.+ --|.|.|+|+|+--
T Consensus 185 ~~~I~~Dt----g~~-HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 185 DLVIGNDT----GPM-HLAAALGTPTVALF 209 (247)
T ss_dssp SEEEEESS----HHH-HHHHHTT--EEEEE
T ss_pred CEEEecCC----hHH-HHHHHHhCCEEEEe
Confidence 99999854 443 44889999999873
No 159
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=91.82 E-value=9.3 Score=40.02 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCcEEEEEecC--C---ChhHHHHHHHHHHHhCC-CcEEEE-EecChHHHHHHHhcCCEEEECCCCCCC
Q 009217 372 NLKAVVRGAKMRGIQFVFTGTN--K---LPSASRALVSFQEELKD-GIVIFV-DSYDDALLHLIFSGSDIILCHSFHDPL 444 (540)
Q Consensus 372 ~Li~A~~~l~~~~~~lvi~G~g--~---~~~~~~~l~~l~~~~~~-~~v~f~-~~~~~~~~~~~~~~aDi~v~PS~~E~f 444 (540)
.+.+++..+.+.+.+++++-.- . .++.....+++.+.++. ++++++ ..++..+...+++.||++|-.-.+
T Consensus 261 ~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH--- 337 (426)
T PRK10017 261 AFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH--- 337 (426)
T ss_pred HHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch---
Confidence 4556666666667777766421 0 11223334555555542 344433 345666777899999998866553
Q ss_pred chHHHHHHhcCCceEEEecCCCccccceeccCCccccceeec--CCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 009217 445 LQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFIS--STFGNISLSQALEEIKNNPLSWKRKIKDA 515 (540)
Q Consensus 445 glv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~--~~~d~~~la~ai~~l~~~~~~~~~~~~~a 515 (540)
..+-|++.|+|+|+-..+ .-+..+... -|...+++ +..++++|.+.+.++++|.+.+++.-+++
T Consensus 338 --a~I~a~~~gvP~i~i~Y~-~K~~~~~~~----lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~l~~~ 403 (426)
T PRK10017 338 --SAIISMNFGTPAIAINYE-HKSAGIMQQ----LGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLAEA 403 (426)
T ss_pred --HHHHHHHcCCCEEEeeeh-HHHHHHHHH----cCCccEEechhhCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 567899999999996552 222233321 12222433 34456789999999999887765544333
No 160
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=91.73 E-value=3.6 Score=41.79 Aligned_cols=114 Identities=12% Similarity=0.020 Sum_probs=68.6
Q ss_pred HHHHHHHhCCCCCCCceEEEEEec-ccccC--CHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC---Cc
Q 009217 340 KVTLQQQLGLSKDASTIVVGCIFS-DVSDV--FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD---GI 413 (540)
Q Consensus 340 ~~~lr~~~gl~~~~~~~lv~~vgr-l~~~K--G~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~---~~ 413 (540)
++.+.+.+++..+ +..+++..|. ..+.| -.+...+.++.+.+.+.++++.| |++ ..+..+++.+..+. .+
T Consensus 167 ~~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~G-g~~--e~~~~~~i~~~~~~~~~~~ 242 (348)
T PRK10916 167 KSETCAAFSLSSE-RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFG-SAK--DHEAGNEILAALNTEQQAW 242 (348)
T ss_pred HHHHHHHcCCCCC-CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEe-CHH--hHHHHHHHHHhcccccccc
Confidence 3334455554322 2234455554 33444 34466777777666688999999 542 23344555554431 12
Q ss_pred E-EEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 414 V-IFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 414 v-~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
+ .+.+..+=.++..+++.||++|.... |.. --|-|.|+|+|+--
T Consensus 243 ~~~l~g~~sL~el~ali~~a~l~I~nDT----Gp~-HlAaA~g~P~valf 287 (348)
T PRK10916 243 CRNLAGETQLEQAVILIAACKAIVTNDS----GLM-HVAAALNRPLVALY 287 (348)
T ss_pred eeeccCCCCHHHHHHHHHhCCEEEecCC----hHH-HHHHHhCCCEEEEE
Confidence 3 34455566777899999999998854 443 34889999999863
No 161
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.60 E-value=1.7 Score=44.00 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=68.8
Q ss_pred eEEEEEe-cccccCC--HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcC
Q 009217 356 IVVGCIF-SDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 432 (540)
Q Consensus 356 ~lv~~vg-rl~~~KG--~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~a 432 (540)
.++++.| .-...|. .+...+.++.+.+.+.++++.| |+ +..+..+++++.++ +-+.+.+.-+=.++..+++.|
T Consensus 177 ~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g-~~--~e~e~~~~i~~~~~-~~~~l~~k~sL~e~~~li~~a 252 (334)
T COG0859 177 YIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFG-GP--DEEERAEEIAKGLP-NAVILAGKTSLEELAALIAGA 252 (334)
T ss_pred eEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEec-Ch--HHHHHHHHHHHhcC-CccccCCCCCHHHHHHHHhcC
Confidence 4555666 4445554 3467777777777788999999 43 34566777777765 223255666667788899999
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
|++|.+.. |++-| |-|.|+|.|+--
T Consensus 253 ~l~I~~DS----g~~Hl-AaA~~~P~I~iy 277 (334)
T COG0859 253 DLVIGNDS----GPMHL-AAALGTPTIALY 277 (334)
T ss_pred CEEEccCC----hHHHH-HHHcCCCEEEEE
Confidence 99998865 55544 889999999974
No 162
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.73 E-value=3.3 Score=41.42 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=64.7
Q ss_pred eEEEEEecccccCCH--HHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 356 IVVGCIFSDVSDVFL--ENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~--~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
.++++.|.=.+.|.. +...+.+..+.+.+.++++.|.++ ...+..+++.+..+ +..+.+..+=.++..+++.||
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~--~e~~~~~~i~~~~~--~~~l~g~~sL~el~ali~~a~ 256 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND--AEKQRAERIAEALP--GAVVLPKMSLAEVAALLAGAD 256 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH--HHHHHHHHHHhhCC--CCeecCCCCHHHHHHHHHcCC
Confidence 445566643455554 467777777766678998885243 23344556665543 334456667677889999999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
++|.+.- |.. --|-|.|+|+|+--
T Consensus 257 l~I~~DS----gp~-HlAaa~g~P~i~lf 280 (319)
T TIGR02193 257 AVVGVDT----GLT-HLAAALDKPTVTLY 280 (319)
T ss_pred EEEeCCC----hHH-HHHHHcCCCEEEEE
Confidence 9998854 333 44779999999864
No 163
>PLN02562 UDP-glycosyltransferase
Probab=90.04 E-value=4.3 Score=42.85 Aligned_cols=142 Identities=10% Similarity=0.009 Sum_probs=75.5
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
.+++..|.....-..+.+-+.+..+.+.+.+|+.+ ..+....+.+.+ .++.+ +|+.+.+..+.. ++++.+++
T Consensus 275 vvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~---~~~~~-~~~~v~~w~PQ~---~iL~h~~v 347 (448)
T PLN02562 275 VIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGY---VERVS-KQGKVVSWAPQL---EVLKHQAV 347 (448)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHH---HHHhc-cCEEEEecCCHH---HHhCCCcc
Confidence 56667777542223334444444443445576653 321110111112 22233 577766666655 45666554
Q ss_pred EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC---CccccceeecCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009217 435 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH---ESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRK 511 (540)
Q Consensus 435 ~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~---~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~ 511 (540)
-++=+. +--.+.+||+.+|+|.|+... ..|...... +.-|. |+-+...+.+++++++.+++.|++.+++.
T Consensus 348 ~~fvtH--~G~nS~~Eal~~GvP~l~~P~----~~DQ~~na~~~~~~~g~-g~~~~~~~~~~l~~~v~~~l~~~~~r~~a 420 (448)
T PLN02562 348 GCYLTH--CGWNSTMEAIQCQKRLLCYPV----AGDQFVNCAYIVDVWKI-GVRISGFGQKEVEEGLRKVMEDSGMGERL 420 (448)
T ss_pred ceEEec--CcchhHHHHHHcCCCEEeCCc----ccchHHHHHHHHHHhCc-eeEeCCCCHHHHHHHHHHHhCCHHHHHHH
Confidence 332232 112578999999999998654 223321100 00121 34555567889999999999887766543
No 164
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=89.22 E-value=4.2 Score=40.80 Aligned_cols=85 Identities=6% Similarity=0.024 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHH
Q 009217 369 FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVP 448 (540)
Q Consensus 369 G~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~ 448 (540)
-.+...+.+..+.+.+.++++.|.++ ...+..+++++.. .++.+.+..+=.++..+++.||++|.... |. +
T Consensus 195 p~e~~a~li~~l~~~~~~ivl~~G~~--~e~~~~~~i~~~~--~~~~l~g~~sL~elaali~~a~l~I~nDS----Gp-~ 265 (322)
T PRK10964 195 PEAHWRELIGLLAPSGLRIKLPWGAE--HEEQRAKRLAEGF--PYVEVLPKLSLEQVARVLAGAKAVVSVDT----GL-S 265 (322)
T ss_pred CHHHHHHHHHHHHHCCCeEEEeCCCH--HHHHHHHHHHccC--CcceecCCCCHHHHHHHHHhCCEEEecCC----cH-H
Confidence 34467777777766678888863143 2334445554433 34556666777788899999999998854 33 4
Q ss_pred HHHHhcCCceEEEe
Q 009217 449 LKALKYGAAPIAVT 462 (540)
Q Consensus 449 lEAma~G~pvI~~~ 462 (540)
--|-|+|+|+|+--
T Consensus 266 HlA~A~g~p~valf 279 (322)
T PRK10964 266 HLTAALDRPNITLY 279 (322)
T ss_pred HHHHHhCCCEEEEE
Confidence 45889999999964
No 165
>PLN03004 UDP-glycosyltransferase
Probab=86.45 E-value=15 Score=38.79 Aligned_cols=144 Identities=13% Similarity=0.065 Sum_probs=74.7
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCCh------hHHHHH-HHHHHHhCCCcEEEEEecChHHHHHH
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLP------SASRAL-VSFQEELKDGIVIFVDSYDDALLHLI 428 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~------~~~~~l-~~l~~~~~~~~v~f~~~~~~~~~~~~ 428 (540)
.++++.|.... -..+.+.+.+.-+...+..|+.+=..+.. ...+.+ +.+.++.+..++.+.+..++.+ +
T Consensus 272 VvyvsfGS~~~-~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~---i 347 (451)
T PLN03004 272 VVFLCFGSLGL-FSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP---V 347 (451)
T ss_pred eEEEEeccccc-CCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH---H
Confidence 55666677632 22334444444343344566665422100 011101 1222333335676666667654 6
Q ss_pred HhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--C-CccccceeecC-----CCCHHHHHHHHHH
Q 009217 429 FSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--H-ESTRFSRFISS-----TFGNISLSQALEE 500 (540)
Q Consensus 429 ~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--~-~~~g~~G~l~~-----~~d~~~la~ai~~ 500 (540)
++.+++-.+=+. +--.+.+||+++|+|.|+... ..|..... . +.-|. |..++ ..+.+++++++.+
T Consensus 348 L~H~~v~~FvTH--~G~nS~lEal~~GVP~v~~P~----~~DQ~~na~~~~~~~g~-g~~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 348 LNHKAVGGFVTH--CGWNSILEAVCAGVPMVAWPL----YAEQRFNRVMIVDEIKI-AISMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred hCCCccceEecc--CcchHHHHHHHcCCCEEeccc----cccchhhHHHHHHHhCc-eEEecCCcCCccCHHHHHHHHHH
Confidence 788888333333 112578999999999999654 22322110 0 00122 34443 2367899999999
Q ss_pred HhcCHHHHHH
Q 009217 501 IKNNPLSWKR 510 (540)
Q Consensus 501 l~~~~~~~~~ 510 (540)
+++|++.+++
T Consensus 421 vm~~~~~r~~ 430 (451)
T PLN03004 421 IIGECPVRER 430 (451)
T ss_pred HhcCHHHHHH
Confidence 9988655443
No 166
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=86.02 E-value=9 Score=40.50 Aligned_cols=136 Identities=10% Similarity=-0.004 Sum_probs=72.4
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEec-CC--ChhHHH-HHHHHHHHhCCCcEEEEEecChHHHHHHHh
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGT-NK--LPSASR-ALVSFQEELKDGIVIFVDSYDDALLHLIFS 430 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~-g~--~~~~~~-~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 430 (540)
..++++.|.+..- ..+.+.+.+.-|...+.+|+.+=. +. .....+ .-..+.++.+ +|..+.+..++.+ +++
T Consensus 265 sVvyvsfGS~~~~-~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~-~~g~v~~w~PQ~~---iL~ 339 (451)
T PLN02410 265 SVIFVSLGSLALM-EINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIIS-GRGYIVKWAPQKE---VLS 339 (451)
T ss_pred cEEEEEccccccC-CHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhcc-CCeEEEccCCHHH---HhC
Confidence 3566667776532 234555555555444556665432 11 001100 1112223333 5666665556554 555
Q ss_pred c--CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc-----CCccccceeec-CCCCHHHHHHHHHHHh
Q 009217 431 G--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD-----HESTRFSRFIS-STFGNISLSQALEEIK 502 (540)
Q Consensus 431 ~--aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~-----~~~~g~~G~l~-~~~d~~~la~ai~~l~ 502 (540)
. ...||.-.-+ .+.+||+++|+|.|+... ..|..... ..+. |+.+ ...+.+++++++.+++
T Consensus 340 h~~v~~fvtH~G~----nS~~Ea~~~GvP~l~~P~----~~DQ~~na~~~~~~~~~---G~~~~~~~~~~~v~~av~~lm 408 (451)
T PLN02410 340 HPAVGGFWSHCGW----NSTLESIGEGVPMICKPF----SSDQKVNARYLECVWKI---GIQVEGDLDRGAVERAVKRLM 408 (451)
T ss_pred CCccCeeeecCch----hHHHHHHHcCCCEEeccc----cccCHHHHHHHHHHhCe---eEEeCCcccHHHHHHHHHHHH
Confidence 5 4447654322 478999999999998654 23332110 0022 3333 3456789999999999
Q ss_pred cCHH
Q 009217 503 NNPL 506 (540)
Q Consensus 503 ~~~~ 506 (540)
.+++
T Consensus 409 ~~~~ 412 (451)
T PLN02410 409 VEEE 412 (451)
T ss_pred cCCc
Confidence 7753
No 167
>PLN02210 UDP-glucosyl transferase
Probab=86.02 E-value=14 Score=39.03 Aligned_cols=134 Identities=13% Similarity=0.177 Sum_probs=73.0
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
..+++..|..... ..+.+.+.+..+...+.+|+++ +....+...+.+.+... + ++..+.+..++. ++++.+.
T Consensus 270 svvyvsfGS~~~~-~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~--~-~~g~v~~w~PQ~---~iL~h~~ 342 (456)
T PLN02210 270 SVVYISFGSMLES-LENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVK--E-GQGVVLEWSPQE---KILSHMA 342 (456)
T ss_pred ceEEEEecccccC-CHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhcc--C-CCeEEEecCCHH---HHhcCcC
Confidence 3566777876543 3445555555555567787764 32111111122322211 1 344445555554 4667666
Q ss_pred --EEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCccccceeecC------CCCHHHHHHHHHH
Q 009217 434 --IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHESTRFSRFISS------TFGNISLSQALEE 500 (540)
Q Consensus 434 --i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~g~~G~l~~------~~d~~~la~ai~~ 500 (540)
+||.-.-+ .+.+||+++|+|.|+-.. ..|.... +.-+. |..+. ..+.+++++++.+
T Consensus 343 vg~FitH~G~----nS~~Eai~~GVP~v~~P~----~~DQ~~na~~~~~~~g~---G~~l~~~~~~~~~~~~~l~~av~~ 411 (456)
T PLN02210 343 ISCFVTHCGW----NSTIETVVAGVPVVAYPS----WTDQPIDARLLVDVFGI---GVRMRNDAVDGELKVEEVERCIEA 411 (456)
T ss_pred cCeEEeeCCc----ccHHHHHHcCCCEEeccc----ccccHHHHHHHHHHhCe---EEEEeccccCCcCCHHHHHHHHHH
Confidence 66654322 468999999999999654 2233210 00122 33432 2466899999999
Q ss_pred HhcCHH
Q 009217 501 IKNNPL 506 (540)
Q Consensus 501 l~~~~~ 506 (540)
++.+++
T Consensus 412 ~m~~~~ 417 (456)
T PLN02210 412 VTEGPA 417 (456)
T ss_pred HhcCch
Confidence 997754
No 168
>PLN03007 UDP-glucosyltransferase family protein
Probab=85.93 E-value=17 Score=38.80 Aligned_cols=135 Identities=13% Similarity=0.045 Sum_probs=72.2
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ecCCCh-----hHHHHHHHHHHHhCCCcEEEEEecChHHHHHH
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GTNKLP-----SASRALVSFQEELKDGIVIFVDSYDDALLHLI 428 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~-----~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~ 428 (540)
..+++..|..... ..+.+.+.+..+...+.+|+++ +..... .+.+.+.+ +....++++.+..++. ++
T Consensus 286 svvyvsfGS~~~~-~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~---r~~~~g~~v~~w~PQ~---~i 358 (482)
T PLN03007 286 SVIYLSFGSVASF-KNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEE---RTKGKGLIIRGWAPQV---LI 358 (482)
T ss_pred ceEEEeecCCcCC-CHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHH---HhccCCEEEecCCCHH---HH
Confidence 3566677876432 1234555555554456676653 421100 01112222 2223567766666664 46
Q ss_pred HhcCCE--EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCcccccee--------ecCCCCHHH
Q 009217 429 FSGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHESTRFSRF--------ISSTFGNIS 493 (540)
Q Consensus 429 ~~~aDi--~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~g~~G~--------l~~~~d~~~ 493 (540)
++.+++ ||.-.- -.+.+||+++|+|.|+... ..|.... +..+.|. |+ -.+..+.++
T Consensus 359 L~h~~v~~fvtH~G----~nS~~Eal~~GVP~v~~P~----~~DQ~~na~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~ 429 (482)
T PLN03007 359 LDHQATGGFVTHCG----WNSLLEGVAAGLPMVTWPV----GAEQFYNEKLVTQVLRTGV-SVGAKKLVKVKGDFISREK 429 (482)
T ss_pred hccCccceeeecCc----chHHHHHHHcCCCeeeccc----hhhhhhhHHHHHHhhccee-EeccccccccccCcccHHH
Confidence 777665 654332 2578999999999999655 2232211 0001222 11 012346789
Q ss_pred HHHHHHHHhcCH
Q 009217 494 LSQALEEIKNNP 505 (540)
Q Consensus 494 la~ai~~l~~~~ 505 (540)
+++++.+++.++
T Consensus 430 l~~av~~~m~~~ 441 (482)
T PLN03007 430 VEKAVREVIVGE 441 (482)
T ss_pred HHHHHHHHhcCc
Confidence 999999999876
No 169
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=85.75 E-value=0.94 Score=41.88 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=29.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+....- =-+.-+..|.++|.+.||+|.|++|...+
T Consensus 1 M~ILlTNDDG-------i~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDG-------IDAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS--------TTSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCC-------CCCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 8999877652 12334788999998888999999998664
No 170
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.54 E-value=11 Score=36.55 Aligned_cols=138 Identities=11% Similarity=0.089 Sum_probs=83.2
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEE-EecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi-~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
-++++.|--+ .|+ +..+.++.|.+.++.+.| +|++ +|. ...+++.++.++ ++.+. .+.+.++.++..||+
T Consensus 160 ~ilI~lGGsD-pk~--lt~kvl~~L~~~~~nl~iV~gs~-~p~-l~~l~k~~~~~~--~i~~~--~~~~dma~LMke~d~ 230 (318)
T COG3980 160 DILITLGGSD-PKN--LTLKVLAELEQKNVNLHIVVGSS-NPT-LKNLRKRAEKYP--NINLY--IDTNDMAELMKEADL 230 (318)
T ss_pred eEEEEccCCC-hhh--hHHHHHHHhhccCeeEEEEecCC-Ccc-hhHHHHHHhhCC--CeeeE--ecchhHHHHHHhcch
Confidence 3566666544 455 678888888776666654 4544 344 345667777764 66653 345557789999999
Q ss_pred EEECCCCCCCchHHHHHHhcCCceEEEecCC--CccccceeccCCccccceeecCC---CCHHHHHHHHHHHhcCHHHHH
Q 009217 435 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSD--IEFRHFAEFDHESTRFSRFISST---FGNISLSQALEEIKNNPLSWK 509 (540)
Q Consensus 435 ~v~PS~~E~fglv~lEAma~G~pvI~~~~~~--gg~~e~v~~~~~~~g~~G~l~~~---~d~~~la~ai~~l~~~~~~~~ 509 (540)
.+..- |.++-||...|+|..+-.... -.....++. -| +.... ..+.+...-+..+.+|+.++.
T Consensus 231 aI~Aa-----GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~----lg---~~~~l~~~l~~~~~~~~~~~i~~d~~~rk 298 (318)
T COG3980 231 AISAA-----GSTLYEALLLGVPSLVLPLAENQIATAKEFEA----LG---IIKQLGYHLKDLAKDYEILQIQKDYARRK 298 (318)
T ss_pred heecc-----chHHHHHHHhcCCceEEeeeccHHHHHHHHHh----cC---chhhccCCCchHHHHHHHHHhhhCHHHhh
Confidence 88753 689999999999944432200 001111111 12 11111 234567777788888988887
Q ss_pred HHHHH
Q 009217 510 RKIKD 514 (540)
Q Consensus 510 ~~~~~ 514 (540)
.+...
T Consensus 299 ~l~~~ 303 (318)
T COG3980 299 NLSFG 303 (318)
T ss_pred hhhhc
Confidence 76543
No 171
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.50 E-value=1.2 Score=37.56 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=26.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
|||+++.. |.....--...+..|+.+.+++||+|.++.++.
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 89999975 433222234567889999999999999998764
No 172
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=85.07 E-value=14 Score=32.89 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=23.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||||++.+.+ .|.-...+..|.+.+ -|++++++-
T Consensus 1 M~ILlle~y~-----ggSHk~~~~~L~~~~---~~~~~lltL 34 (168)
T PF12038_consen 1 MRILLLEPYY-----GGSHKQWADGLAAHS---EHEWTLLTL 34 (168)
T ss_pred CeEEEEcccc-----ccCHHHHHHHHHHhc---cCCEEEEEc
Confidence 8999997632 355555555666665 488888873
No 173
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.71 E-value=9 Score=41.10 Aligned_cols=183 Identities=9% Similarity=-0.004 Sum_probs=104.8
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEE
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVD 418 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~ 418 (540)
.|..+|+|.+ ..++++...+.+-- ...++.+..+++ ++-.|++.- -|- .-+..++..+++++. +||.|..
T Consensus 749 ~r~~y~Lp~d--~vvf~~FNqLyKid--P~~l~~W~~ILk~VPnS~Lwllr-fPa-~ge~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 749 TRSQYGLPED--AVVFCNFNQLYKID--PSTLQMWANILKRVPNSVLWLLR-FPA-VGEQRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred CCCCCCCCCC--eEEEeechhhhcCC--HHHHHHHHHHHHhCCcceeEEEe-ccc-cchHHHHHHHHHhCCCccceeecc
Confidence 4567888865 45565555554442 246777777665 465666654 211 113567777777764 8999875
Q ss_pred ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC-CccccceeecCCCCHHHHHHH
Q 009217 419 SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQA 497 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~-~~~g~~G~l~~~~d~~~la~a 497 (540)
-...++-..-+.-+|+.+=....-|- .+.++.+-.|+|+|...- .-+..-|.... ...|. |-++ ..+.++..+.
T Consensus 823 va~k~eHvrr~~LaDv~LDTplcnGh-TTg~dvLw~GvPmVTmpg--e~lAsrVa~Sll~~~Gl-~hli-ak~~eEY~~i 897 (966)
T KOG4626|consen 823 VAAKEEHVRRGQLADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPG--ETLASRVAASLLTALGL-GHLI-AKNREEYVQI 897 (966)
T ss_pred ccchHHHHHhhhhhhhcccCcCcCCc-ccchhhhccCCceeeccc--HHHHHHHHHHHHHHccc-HHHH-hhhHHHHHHH
Confidence 44333333556778998877665442 456899999998887532 11111111100 00122 1122 1233455555
Q ss_pred HHHHhcCHHHHHHHHHHHH---h--ccCChHHHHHHHHHHHHHHH
Q 009217 498 LEEIKNNPLSWKRKIKDAM---L--QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 498 i~~l~~~~~~~~~~~~~a~---~--~~fsw~~~a~~~y~~lY~~l 537 (540)
-..+-.|.+..+.+...-+ . --|+-..-+..+ +.+|..+
T Consensus 898 aV~Latd~~~L~~lr~~l~~~r~~splfd~~q~~~~L-E~~y~~M 941 (966)
T KOG4626|consen 898 AVRLATDKEYLKKLRAKLRKARASSPLFDTKQYAKGL-ERLYLQM 941 (966)
T ss_pred HHHhhcCHHHHHHHHHHHHHHhcCCCccCchHHHHHH-HHHHHHH
Confidence 5666677777776654332 2 568877888875 7777665
No 174
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=82.27 E-value=18 Score=35.70 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhc-CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHH
Q 009217 370 LENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVP 448 (540)
Q Consensus 370 ~~~Li~A~~~l~~~-~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~ 448 (540)
++.+.+++..+.+. +.+++++.-... .-.+..+++.+.++. ...++...+.++...+++.||++|--..+ ..
T Consensus 190 ~~~l~~~l~~l~~~~g~~v~~i~~~~~-~D~~~~~~l~~~~~~-~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-----~~ 262 (298)
T TIGR03609 190 LLRLLRALDRLQRDTGAFVLFLPFQQP-QDLPLARALRDQLLG-PAEVLSPLDPEELLGLFASARLVIGMRLH-----AL 262 (298)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCcc-hhHHHHHHHHHhcCC-CcEEEecCCHHHHHHHHhhCCEEEEechH-----HH
Confidence 45677777777654 777766653211 123445556665542 22223455666777899999988877664 56
Q ss_pred HHHHhcCCceEEEec
Q 009217 449 LKALKYGAAPIAVTS 463 (540)
Q Consensus 449 lEAma~G~pvI~~~~ 463 (540)
+-|+.+|+|+|+-..
T Consensus 263 I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 263 ILAAAAGVPFVALSY 277 (298)
T ss_pred HHHHHcCCCEEEeec
Confidence 889999999998643
No 175
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=81.39 E-value=2.6 Score=36.24 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=19.8
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|==.=...|+++|+++||||++.++.
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 343344568999999999999988864
No 176
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=80.94 E-value=17 Score=34.47 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=26.9
Q ss_pred CCEEEE-CCCCCCCchHHHHHHhcCCceEE-EecCCCcccccee
Q 009217 432 SDIILC-HSFHDPLLQVPLKALKYGAAPIA-VTSSDIEFRHFAE 473 (540)
Q Consensus 432 aDi~v~-PS~~E~fglv~lEAma~G~pvI~-~~~~~gg~~e~v~ 473 (540)
-|++++ =...|- +++.||-..|.|||+ .|+ ...++.|+
T Consensus 157 Pd~l~ViDp~~e~--iAv~EA~klgIPVvAlvDT--n~dpd~VD 196 (252)
T COG0052 157 PDVLFVIDPRKEK--IAVKEANKLGIPVVALVDT--NCDPDGVD 196 (252)
T ss_pred CCEEEEeCCcHhH--HHHHHHHHcCCCEEEEecC--CCCCccCc
Confidence 455444 345676 788999999999999 455 55666665
No 177
>PLN02555 limonoid glucosyltransferase
Probab=79.87 E-value=47 Score=35.41 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=74.5
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ecCC-ChhHH-HHH-HHHHHHhCCCcEEEEEecChHHHHHHH--
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GTNK-LPSAS-RAL-VSFQEELKDGIVIFVDSYDDALLHLIF-- 429 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~-~~~~~-~~l-~~l~~~~~~~~v~f~~~~~~~~~~~~~-- 429 (540)
.+++..|.+. .-..+.+.+.+..+...+.+|+++ .... ..... ..+ +.+.++.+ +|+.+.+..++.. ++
T Consensus 279 VvyvsfGS~~-~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~-~~g~v~~W~PQ~~---iL~H 353 (480)
T PLN02555 279 VVYISFGTVV-YLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAG-DKGKIVQWCPQEK---VLAH 353 (480)
T ss_pred eeEEEecccc-CCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcC-CceEEEecCCHHH---HhCC
Confidence 4666667754 223345555555555556787765 3110 00000 001 11222232 5676666666543 45
Q ss_pred hcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCccccceeecC-------CCCHHHHHHH
Q 009217 430 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHESTRFSRFISS-------TFGNISLSQA 497 (540)
Q Consensus 430 ~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~g~~G~l~~-------~~d~~~la~a 497 (540)
.++.+||.-.- -.+.+||..+|+|.|+... ..|.... +.-+.| +.+. ..+.++++++
T Consensus 354 ~~v~~FvtH~G----~nS~~Eai~~GVP~l~~P~----~~DQ~~Na~~~~~~~gvG---v~l~~~~~~~~~v~~~~v~~~ 422 (480)
T PLN02555 354 PSVACFVTHCG----WNSTMEALSSGVPVVCFPQ----WGDQVTDAVYLVDVFKTG---VRLCRGEAENKLITREEVAEC 422 (480)
T ss_pred CccCeEEecCC----cchHHHHHHcCCCEEeCCC----ccccHHHHHHHHHHhCce---EEccCCccccCcCcHHHHHHH
Confidence 55677775432 2578999999999999655 2222110 000122 3331 2346799999
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 009217 498 LEEIKNNPLSWKRKIKDA 515 (540)
Q Consensus 498 i~~l~~~~~~~~~~~~~a 515 (540)
+.+++.+++ .+++.++|
T Consensus 423 v~~vm~~~~-g~~~r~ra 439 (480)
T PLN02555 423 LLEATVGEK-AAELKQNA 439 (480)
T ss_pred HHHHhcCch-HHHHHHHH
Confidence 999987643 33444443
No 178
>PLN02670 transferase, transferring glycosyl groups
Probab=79.38 E-value=64 Score=34.34 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=67.6
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCC---h----hHHHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL---P----SASRALVSFQEELKDGIVIFVDSYDDALLHL 427 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~---~----~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~ 427 (540)
..++++.|.+..- ..+.+.+.+..+...+..|+.+=..+. . .+.+.+. ++.+..-+.+.+..++. +
T Consensus 279 sVvyvsfGS~~~l-~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~---~~~~~rG~vv~~W~PQ~---~ 351 (472)
T PLN02670 279 SVVYVALGTEASL-RREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFE---ERVKGRGMIHVGWVPQV---K 351 (472)
T ss_pred ceEEEEecccccC-CHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHH---HhccCCCeEEeCcCCHH---H
Confidence 3556666776422 233444444444444556666532210 0 0111222 12211224444555654 3
Q ss_pred HHhcCCE--EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec----cCCccccceeecCC------CCHHHHH
Q 009217 428 IFSGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF----DHESTRFSRFISST------FGNISLS 495 (540)
Q Consensus 428 ~~~~aDi--~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~----~~~~~g~~G~l~~~------~d~~~la 495 (540)
+++...+ ||.-.- -.+.+||+++|+|.|+... ..|.... ...+. |+.++. .+.+++.
T Consensus 352 IL~H~~v~~FvtHcG----wnS~~Eai~~GVP~l~~P~----~~DQ~~Na~~v~~~g~---Gv~l~~~~~~~~~~~e~i~ 420 (472)
T PLN02670 352 ILSHESVGGFLTHCG----WNSVVEGLGFGRVLILFPV----LNEQGLNTRLLHGKKL---GLEVPRDERDGSFTSDSVA 420 (472)
T ss_pred HhcCcccceeeecCC----cchHHHHHHcCCCEEeCcc----hhccHHHHHHHHHcCe---eEEeeccccCCcCcHHHHH
Confidence 5655555 554321 2578999999999999654 2232110 01123 344432 3578999
Q ss_pred HHHHHHhcCH
Q 009217 496 QALEEIKNNP 505 (540)
Q Consensus 496 ~ai~~l~~~~ 505 (540)
+++.+++.++
T Consensus 421 ~av~~vm~~~ 430 (472)
T PLN02670 421 ESVRLAMVDD 430 (472)
T ss_pred HHHHHHhcCc
Confidence 9999999775
No 179
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=79.08 E-value=20 Score=38.30 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=71.5
Q ss_pred CceEEEEEecccccCCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcC
Q 009217 354 STIVVGCIFSDVSDVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 432 (540)
Q Consensus 354 ~~~lv~~vgrl~~~KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~a 432 (540)
+..+++..|..... -.+..++++....+ .+.+++..=++..+ . .++ +|+.+....++. ++++..
T Consensus 276 ~~vv~vsfGs~~~~-~~~~~~~~~~~~~~~~~~~~iW~~~~~~~---~-------~l~-~n~~~~~W~PQ~---~lL~hp 340 (500)
T PF00201_consen 276 KGVVYVSFGSIVSS-MPEEKLKEIAEAFENLPQRFIWKYEGEPP---E-------NLP-KNVLIVKWLPQN---DLLAHP 340 (500)
T ss_dssp TEEEEEE-TSSSTT--HHHHHHHHHHHHHCSTTEEEEEETCSHG---C-------HHH-TTEEEESS--HH---HHHTST
T ss_pred CCEEEEecCcccch-hHHHHHHHHHHHHhhCCCccccccccccc---c-------ccc-ceEEEeccccch---hhhhcc
Confidence 34566677887532 23343444433333 34577776544211 1 122 577766666654 456544
Q ss_pred --CEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--CCccccceeecC--CCCHHHHHHHHHHHhcCHH
Q 009217 433 --DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--HESTRFSRFISS--TFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 433 --Di~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--~~~~g~~G~l~~--~~d~~~la~ai~~l~~~~~ 506 (540)
++||.= +--.+.+||+.+|+|+|+... ..|..... .+..|. |...+ ..+.+.|.+||.++++|+.
T Consensus 341 ~v~~fitH----gG~~s~~Ea~~~gvP~l~~P~----~~DQ~~na~~~~~~G~-g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 341 RVKLFITH----GGLNSTQEALYHGVPMLGIPL----FGDQPRNAARVEEKGV-GVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp TEEEEEES------HHHHHHHHHCT--EEE-GC----STTHHHHHHHHHHTTS-EEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred cceeeeec----cccchhhhhhhccCCccCCCC----cccCCccceEEEEEee-EEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 455533 334678999999999999654 34442210 001232 34443 4457899999999999987
Q ss_pred HHHHHHH
Q 009217 507 SWKRKIK 513 (540)
Q Consensus 507 ~~~~~~~ 513 (540)
..+...+
T Consensus 412 y~~~a~~ 418 (500)
T PF00201_consen 412 YKENAKR 418 (500)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 180
>PLN02208 glycosyltransferase family protein
Probab=78.75 E-value=29 Score=36.57 Aligned_cols=147 Identities=13% Similarity=0.103 Sum_probs=74.9
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEE-EEEec--CC-C--hhHHHHHHHHHHHhCCCcEEEEEecChHHHHHH
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQF-VFTGT--NK-L--PSASRALVSFQEELKDGIVIFVDSYDDALLHLI 428 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~l-vi~G~--g~-~--~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~ 428 (540)
..++++.|.... -..+.+.+.+..+...+..+ +++-. +. + ..+.+.+.+..+ ..++.+.+..++.+ +
T Consensus 252 sVvyvSfGS~~~-l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~---~~g~~v~~W~PQ~~---i 324 (442)
T PLN02208 252 SVVFCSLGSQII-LEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVK---GRGVVWGGWVQQPL---I 324 (442)
T ss_pred cEEEEecccccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHh---cCCcEeeccCCHHH---H
Confidence 356667777653 23445666665543222222 23321 10 0 011222332222 24565555666553 5
Q ss_pred HhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC---CccccceeecCC-----CCHHHHHHHHHH
Q 009217 429 FSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH---ESTRFSRFISST-----FGNISLSQALEE 500 (540)
Q Consensus 429 ~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~---~~~g~~G~l~~~-----~d~~~la~ai~~ 500 (540)
++...+-++=|. +=-.+.+||+++|+|+|+-.. ..|...... +.-|. |..++. .+.++++++|.+
T Consensus 325 L~H~~v~~FvtH--cG~nS~~Eai~~GVP~l~~P~----~~DQ~~na~~~~~~~g~-gv~~~~~~~~~~~~~~l~~ai~~ 397 (442)
T PLN02208 325 LDHPSIGCFVNH--CGPGTIWESLVSDCQMVLIPF----LSDQVLFTRLMTEEFEV-SVEVSREKTGWFSKESLSNAIKS 397 (442)
T ss_pred hcCCccCeEEcc--CCchHHHHHHHcCCCEEecCc----chhhHHHHHHHHHHhce-eEEeccccCCcCcHHHHHHHHHH
Confidence 666665333343 112578999999999999654 233321100 00121 344432 366899999999
Q ss_pred HhcCH-HHHHHHHHHH
Q 009217 501 IKNNP-LSWKRKIKDA 515 (540)
Q Consensus 501 l~~~~-~~~~~~~~~a 515 (540)
+++++ +..+++.+++
T Consensus 398 ~m~~~~e~g~~~r~~~ 413 (442)
T PLN02208 398 VMDKDSDLGKLVRSNH 413 (442)
T ss_pred HhcCCchhHHHHHHHH
Confidence 99765 4445555444
No 181
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=78.68 E-value=27 Score=32.46 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=61.9
Q ss_pred cccCCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCC--cEEEEEec-ChHHHHHHHhcCCEEEECCC
Q 009217 365 VSDVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDG--IVIFVDSY-DDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 365 ~~~KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~--~v~f~~~~-~~~~~~~~~~~aDi~v~PS~ 440 (540)
+-.|=+..|..|+.-+.. .+.+++++|+. +.....+++.|+..+.. +=+++||. ..... .-+..=|++++-.-
T Consensus 47 dL~kT~~~L~~A~~~i~~~~~~~ILfVgTk--~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~-~~~~~Pdliiv~dp 123 (204)
T PRK04020 47 DVRKTDERIRIAAKFLSRYEPEKILVVSSR--QYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSL-KGYIEPDVVVVTDP 123 (204)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHhCCeeecCccCCCcCcCcch-hccCCCCEEEEECC
Confidence 334445667777765544 46789999965 34667788888776521 11356554 32222 23334566555543
Q ss_pred -CCCCchHHHHHHhcCCceEE-EecCCCcccccee
Q 009217 441 -HDPLLQVPLKALKYGAAPIA-VTSSDIEFRHFAE 473 (540)
Q Consensus 441 -~E~fglv~lEAma~G~pvI~-~~~~~gg~~e~v~ 473 (540)
.| ..++.||...|.|+|+ .|+ ..-++.|+
T Consensus 124 ~~~--~~AI~EA~kl~IP~IaivDT--n~dp~~Vd 154 (204)
T PRK04020 124 RGD--AQAVKEAIEVGIPVVALCDT--DNLTSNVD 154 (204)
T ss_pred ccc--HHHHHHHHHhCCCEEEEEeC--CCCcccCc
Confidence 34 4788999999999999 444 44555554
No 182
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=78.68 E-value=60 Score=33.29 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCC
Q 009217 399 SRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE 477 (540)
Q Consensus 399 ~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~ 477 (540)
..-.+.++..... +++.+...-..+++...+++||++|---.+ +++-||+.|+|+|+-... +-...+.++
T Consensus 252 ~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~H-----saI~al~~g~p~i~i~Y~-~K~~~l~~~--- 322 (385)
T COG2327 252 LAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRLH-----SAIMALAFGVPAIAIAYD-PKVRGLMQD--- 322 (385)
T ss_pred hHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehhH-----HHHHHHhcCCCeEEEeec-HHHHHHHHH---
Confidence 4455666666543 677654322234556789999998876553 568899999999997652 222223322
Q ss_pred ccccceeecC--CCCHHHHHHHHHHHh-cCHHHHHH
Q 009217 478 STRFSRFISS--TFGNISLSQALEEIK-NNPLSWKR 510 (540)
Q Consensus 478 ~~g~~G~l~~--~~d~~~la~ai~~l~-~~~~~~~~ 510 (540)
.|..++..+ +.+.+.+..+..+.+ ++++++++
T Consensus 323 -~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 323 -LGLPGFAIDIDPLDAEILSAVVLERLTKLDELRER 357 (385)
T ss_pred -cCCCcccccCCCCchHHHHHHHHHHHhccHHHHhh
Confidence 344445543 556677777666544 45555544
No 183
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=78.44 E-value=18 Score=35.15 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=53.6
Q ss_pred ceEEEEEeccccc-------CCHHHHHHHHHHHHh--cCcEEEEEecCCCh---hHHHHHHHHHHHhCCCcEEEEEecCh
Q 009217 355 TIVVGCIFSDVSD-------VFLENLKAVVRGAKM--RGIQFVFTGTNKLP---SASRALVSFQEELKDGIVIFVDSYDD 422 (540)
Q Consensus 355 ~~lv~~vgrl~~~-------KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~---~~~~~l~~l~~~~~~~~v~f~~~~~~ 422 (540)
.+.+++....... .....+++.+..+.+ ++++++|== -|.. ...+.+.++.. ..++.+. .++
T Consensus 117 ~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~~~~~---~~~~~~~--~~~ 190 (269)
T PF05159_consen 117 KKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLEELPN---LPNVVII--DDD 190 (269)
T ss_pred CCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhhhhhc---CCCeEEE--CCC
Confidence 3555555554433 133455666665554 378887743 2210 00122222211 2344433 122
Q ss_pred HHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEE
Q 009217 423 ALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV 461 (540)
Q Consensus 423 ~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~ 461 (540)
--...++..||.++.-+- .+.+||+.+|+|||+.
T Consensus 191 ~~~~~Ll~~s~~VvtinS-----tvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 191 VNLYELLEQSDAVVTINS-----TVGLEALLHGKPVIVF 224 (269)
T ss_pred CCHHHHHHhCCEEEEECC-----HHHHHHHHcCCceEEe
Confidence 234578899999887653 6899999999999995
No 184
>PLN02167 UDP-glycosyltransferase family protein
Probab=76.10 E-value=41 Score=35.89 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=68.5
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ecCCCh--hHHHHH-HHHHHHhCCCcEEEEEecChHHHHHHHh
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GTNKLP--SASRAL-VSFQEELKDGIVIFVDSYDDALLHLIFS 430 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~--~~~~~l-~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 430 (540)
..+++..|.+.. -..+.+.+.+..+...+.+|+++ +..... .....+ +.+.++.. ++..+.+..++.. +++
T Consensus 281 svvyvsfGS~~~-~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~-~rg~v~~w~PQ~~---iL~ 355 (475)
T PLN02167 281 SVVFLCFGSLGS-LPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVM-GRGLVCGWAPQVE---ILA 355 (475)
T ss_pred ceEEEeeccccc-CCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhc-cCeeeeccCCHHH---Hhc
Confidence 356666677632 12334444444444446777654 321110 000001 11222222 4555555556543 454
Q ss_pred c--CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc---CCccccceeecC---------CCCHHHHHH
Q 009217 431 G--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD---HESTRFSRFISS---------TFGNISLSQ 496 (540)
Q Consensus 431 ~--aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~---~~~~g~~G~l~~---------~~d~~~la~ 496 (540)
. ++.||.-.-+ .+.+||+++|+|.|+-.. ..|..... .+.-|. |+.+. ..+.+++++
T Consensus 356 h~~vg~fvtH~G~----nS~~Eal~~GvP~l~~P~----~~DQ~~na~~~~~~~g~-g~~~~~~~~~~~~~~~~~~~l~~ 426 (475)
T PLN02167 356 HKAIGGFVSHCGW----NSVLESLWFGVPIATWPM----YAEQQLNAFTMVKELGL-AVELRLDYVSAYGEIVKADEIAG 426 (475)
T ss_pred CcccCeEEeeCCc----ccHHHHHHcCCCEEeccc----cccchhhHHHHHHHhCe-eEEeecccccccCCcccHHHHHH
Confidence 4 5567754322 368999999999998654 22332110 000121 33332 235689999
Q ss_pred HHHHHhcCH
Q 009217 497 ALEEIKNNP 505 (540)
Q Consensus 497 ai~~l~~~~ 505 (540)
++.+++.++
T Consensus 427 av~~~m~~~ 435 (475)
T PLN02167 427 AVRSLMDGE 435 (475)
T ss_pred HHHHHhcCC
Confidence 999998654
No 185
>PLN02554 UDP-glycosyltransferase family protein
Probab=75.65 E-value=40 Score=35.98 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=50.4
Q ss_pred CcEEEEEecChHHHHHHH--hcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc---CCccccceeec
Q 009217 412 GIVIFVDSYDDALLHLIF--SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD---HESTRFSRFIS 486 (540)
Q Consensus 412 ~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~---~~~~g~~G~l~ 486 (540)
+|+.+.+..++.. ++ .+++.||.=. | -.+.+||+.+|+|.|+... ..|..... .+.-|. |..+
T Consensus 342 ~~g~v~~W~PQ~~---iL~H~~v~~FvtH~---G-~nS~~Ea~~~GVP~l~~P~----~~DQ~~Na~~~v~~~g~-Gv~l 409 (481)
T PLN02554 342 DIGKVIGWAPQVA---VLAKPAIGGFVTHC---G-WNSILESLWFGVPMAAWPL----YAEQKFNAFEMVEELGL-AVEI 409 (481)
T ss_pred cCceEEeeCCHHH---HhCCcccCcccccC---c-cchHHHHHHcCCCEEecCc----cccchhhHHHHHHHhCc-eEEe
Confidence 5666666666543 55 4555566432 2 2478999999999999654 23332111 000121 2333
Q ss_pred C-------------CCCHHHHHHHHHHHhc-CHHHHHH
Q 009217 487 S-------------TFGNISLSQALEEIKN-NPLSWKR 510 (540)
Q Consensus 487 ~-------------~~d~~~la~ai~~l~~-~~~~~~~ 510 (540)
+ ..+.++++++|.+++. |++.+++
T Consensus 410 ~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~ 447 (481)
T PLN02554 410 RKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKR 447 (481)
T ss_pred eccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHH
Confidence 2 2356899999999996 6554443
No 186
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=75.51 E-value=44 Score=30.84 Aligned_cols=100 Identities=10% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEEecChHHHHHHHhcCCEEEECCC-CCC
Q 009217 368 VFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDSYDDALLHLIFSGSDIILCHSF-HDP 443 (540)
Q Consensus 368 KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~ 443 (540)
|=...|.+|+.-+.+ .+.+++++|..+ .....+++.|+..+. -+-+|+|+.=......-+..-|++++-.- .|.
T Consensus 44 kT~~~L~~A~~~i~~i~~~~ILfVgtk~--~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~ 121 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIEPEDILVVSARI--YGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADH 121 (196)
T ss_pred HHHHHHHHHHHHHHHhhCCeEEEEecCH--HHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCcccc
Confidence 445566666655543 367899999653 456677777877652 11245655421111123455677666543 444
Q ss_pred CchHHHHHHhcCCceEE-EecCCCcccccee
Q 009217 444 LLQVPLKALKYGAAPIA-VTSSDIEFRHFAE 473 (540)
Q Consensus 444 fglv~lEAma~G~pvI~-~~~~~gg~~e~v~ 473 (540)
.++.||...|.|+|+ .++ ..-++.|+
T Consensus 122 --~Av~EA~~l~IP~Iai~DT--n~dp~~vd 148 (196)
T TIGR01012 122 --QALKEASEVGIPIVALCDT--DNPLRYVD 148 (196)
T ss_pred --HHHHHHHHcCCCEEEEeeC--CCCCccCC
Confidence 678999999999999 444 44555554
No 187
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=75.31 E-value=5.1 Score=36.27 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=27.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
|||.+|+. +|=+| ..+.++..++||+|+-|+.+..
T Consensus 1 mKIaiIgA-------sG~~G---s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGA-------SGKAG---SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEec-------CchhH---HHHHHHHHhCCCeeEEEEeChH
Confidence 89999986 24444 6788899999999999986544
No 188
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=74.62 E-value=19 Score=35.10 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=30.4
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
..+.|++.|++. .| .-|-.+.+.+|+.+|++.|+.|.+|=
T Consensus 100 ~~~~~vi~vts~-~~---g~Gktt~a~nLA~~la~~g~~VllID 139 (274)
T TIGR03029 100 SEGRKALAVVSA-KS---GEGCSYIAANLAIVFSQLGEKTLLID 139 (274)
T ss_pred CCCCeEEEEECC-CC---CCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 445688888763 12 24677888999999999999999883
No 189
>PLN02764 glycosyltransferase family protein
Probab=73.66 E-value=48 Score=35.02 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=77.1
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ec--CCCh---hHHHHHHHHHHHhCCCcEEE
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GT--NKLP---SASRALVSFQEELKDGIVIF 416 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~--g~~~---~~~~~l~~l~~~~~~~~v~f 416 (540)
.-+.|.-.. +...++++.|.+..- ..+.+-+.+..|...+..|+++ -. +.+. .+.+.+++ +.+..-+.+
T Consensus 247 cl~WLD~q~-~~sVvyvsfGS~~~~-~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~---r~~grG~v~ 321 (453)
T PLN02764 247 WVKWLSGYE-PDSVVFCALGSQVIL-EKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEE---RVKGRGVVW 321 (453)
T ss_pred HHHHHhCCC-CCceEEEeecccccC-CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHh---hhccCCcEE
Confidence 344454332 234566777876431 2335566555554444444333 21 1110 01112222 111123344
Q ss_pred EEecChHHHHHHHhc--CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--C-CccccceeecC----
Q 009217 417 VDSYDDALLHLIFSG--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--H-ESTRFSRFISS---- 487 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~--aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--~-~~~g~~G~l~~---- 487 (540)
.+..++.+ +++. ++.||.-.- -.+.+||+.+|+|.|+-.. ..|..... . ++-|. |+.+.
T Consensus 322 ~~W~PQ~~---vL~h~~v~~FvtH~G----~nS~~Eal~~GVP~l~~P~----~~DQ~~na~~l~~~~g~-gv~~~~~~~ 389 (453)
T PLN02764 322 GGWVQQPL---ILSHPSVGCFVSHCG----FGSMWESLLSDCQIVLVPQ----LGDQVLNTRLLSDELKV-SVEVAREET 389 (453)
T ss_pred eCCCCHHH---HhcCcccCeEEecCC----chHHHHHHHcCCCEEeCCc----ccchHHHHHHHHHHhce-EEEeccccC
Confidence 45556554 4554 455775422 2678999999999999654 23332100 0 00121 33332
Q ss_pred -CCCHHHHHHHHHHHhcCH-HHHHHHHHHH
Q 009217 488 -TFGNISLSQALEEIKNNP-LSWKRKIKDA 515 (540)
Q Consensus 488 -~~d~~~la~ai~~l~~~~-~~~~~~~~~a 515 (540)
..+.+++.+++.++++++ +..+++.+++
T Consensus 390 ~~~~~e~i~~av~~vm~~~~~~g~~~r~~a 419 (453)
T PLN02764 390 GWFSKESLRDAINSVMKRDSEIGNLVKKNH 419 (453)
T ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 236789999999999775 4344444444
No 190
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=73.09 E-value=51 Score=35.16 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 51 GSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 51 ~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
..++.++||+++. +| . -|=-.=..+|++.|+.+|+.||++++.+
T Consensus 4 ~~~~~~~HVvl~P---fp--a-qGHi~P~l~LAk~La~~G~~VTfv~T~~ 47 (477)
T PLN02863 4 LNKPAGTHVLVFP---FP--A-QGHMIPLLDLTHRLALRGLTITVLVTPK 47 (477)
T ss_pred cccCCCCEEEEec---Cc--c-cchHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3556778999874 23 2 3445567899999999999999998654
No 191
>PLN02173 UDP-glucosyl transferase family protein
Probab=72.69 E-value=60 Score=34.29 Aligned_cols=133 Identities=8% Similarity=0.058 Sum_probs=68.0
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK-LPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~-~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
.+++..|.... -..+.+.+.+..+. +..|+.+=..+ ...+.+.+ .++...+++.+.+..++. ++++...+
T Consensus 266 vvyvsfGS~~~-~~~~~~~ela~gLs--~~~flWvvr~~~~~~lp~~~---~~~~~~~~~~i~~W~PQ~---~iL~H~~v 336 (449)
T PLN02173 266 VVYIAFGSMAK-LSSEQMEEIASAIS--NFSYLWVVRASEESKLPPGF---LETVDKDKSLVLKWSPQL---QVLSNKAI 336 (449)
T ss_pred eEEEEeccccc-CCHHHHHHHHHHhc--CCCEEEEEeccchhcccchH---HHhhcCCceEEeCCCCHH---HHhCCCcc
Confidence 45666677543 23345555555553 33344432111 11111112 222222567777666654 46676663
Q ss_pred EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCccccceeecC--C----CCHHHHHHHHHHHhc
Q 009217 435 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHESTRFSRFISS--T----FGNISLSQALEEIKN 503 (540)
Q Consensus 435 ~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~g~~G~l~~--~----~d~~~la~ai~~l~~ 503 (540)
-.+=+. +=..+.+||+++|+|.|+-.. ..|.... +.-+.| .-+. . .+.+++++++.+++.
T Consensus 337 ~~FvtH--cGwnS~~Eai~~GVP~l~~P~----~~DQ~~Na~~v~~~~g~G---v~v~~~~~~~~~~~e~v~~av~~vm~ 407 (449)
T PLN02173 337 GCFMTH--CGWNSTMEGLSLGVPMVAMPQ----WTDQPMNAKYIQDVWKVG---VRVKAEKESGIAKREEIEFSIKEVME 407 (449)
T ss_pred ceEEec--CccchHHHHHHcCCCEEecCc----hhcchHHHHHHHHHhCce---EEEeecccCCcccHHHHHHHHHHHhc
Confidence 333233 223678999999999999654 2232110 000123 2221 1 256899999999997
Q ss_pred CHH
Q 009217 504 NPL 506 (540)
Q Consensus 504 ~~~ 506 (540)
+++
T Consensus 408 ~~~ 410 (449)
T PLN02173 408 GEK 410 (449)
T ss_pred CCh
Confidence 643
No 192
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.67 E-value=63 Score=31.48 Aligned_cols=102 Identities=10% Similarity=-0.036 Sum_probs=65.0
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecC-----------CChhHHHHHHHHHHHhCCCcEEEEEecChHHH
Q 009217 357 VVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTN-----------KLPSASRALVSFQEELKDGIVIFVDSYDDALL 425 (540)
Q Consensus 357 lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g-----------~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~ 425 (540)
+++.+|- .--...+.+++.++++.+.+.+++..|.- .....-..+++.+++++. -.+...++....
T Consensus 28 ~~~iaGP-Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl--~~~te~~d~~~~ 104 (266)
T PRK13398 28 KIIIAGP-CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNL--PVVTEVMDTRDV 104 (266)
T ss_pred EEEEEeC-CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCC--CEEEeeCChhhH
Confidence 4444454 22234678899999998888888888821 111223456666666652 223455666666
Q ss_pred HHHHhcCCEEEECCC-CCCCchHHHHHHhcCCceEEEe
Q 009217 426 HLIFSGSDIILCHSF-HDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 426 ~~~~~~aDi~v~PS~-~E~fglv~lEAma~G~pvI~~~ 462 (540)
..+...+|++-+||+ .+.+.+ +-++-..|+||+.++
T Consensus 105 ~~l~~~vd~~kIga~~~~n~~L-L~~~a~~gkPV~lk~ 141 (266)
T PRK13398 105 EEVADYADMLQIGSRNMQNFEL-LKEVGKTKKPILLKR 141 (266)
T ss_pred HHHHHhCCEEEECcccccCHHH-HHHHhcCCCcEEEeC
Confidence 566566999999998 566554 334457899998885
No 193
>PLN02207 UDP-glycosyltransferase
Probab=72.47 E-value=1.3e+02 Score=32.11 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=70.8
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHH-HHHHHHhCCCcEEEEEecC
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRAL-VSFQEELKDGIVIFVDSYD 421 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l-~~l~~~~~~~~v~f~~~~~ 421 (540)
+.+.+.-... +..++++.|....- ..+.+-+.+..+...+.+|+.+=..+.....+.+ +.+.++.+ +|+.+.+..+
T Consensus 265 ~~~WLd~~~~-~sVVyvSfGS~~~~-~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~-~~g~i~~W~P 341 (468)
T PLN02207 265 LMKWLDDQPE-ASVVFLCFGSMGRL-RGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVS-GRGMICGWSP 341 (468)
T ss_pred HHHHHhcCCC-CcEEEEEeccCcCC-CHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcC-CCeEEEEeCC
Confidence 4444433322 23556666765421 2233333333333345566664322111000001 12223333 5666666666
Q ss_pred hHHHHHHHhc--CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCccccc---eeec---CC
Q 009217 422 DALLHLIFSG--SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHESTRFS---RFIS---ST 488 (540)
Q Consensus 422 ~~~~~~~~~~--aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~g~~---G~l~---~~ 488 (540)
+.+ +++. ...||.-.-+ .+.+||+.+|+|+|+-.. ..|.... +..+.|.. +... +.
T Consensus 342 Q~~---IL~H~~vg~FvTH~Gw----nS~~Eai~~GVP~l~~P~----~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~ 410 (468)
T PLN02207 342 QVE---ILAHKAVGGFVSHCGW----NSIVESLWFGVPIVTWPM----YAEQQLNAFLMVKELKLAVELKLDYRVHSDEI 410 (468)
T ss_pred HHH---HhcccccceeeecCcc----ccHHHHHHcCCCEEecCc----cccchhhHHHHHHHhCceEEEecccccccCCc
Confidence 654 3444 4446644322 467999999999998654 2333211 00122320 0000 12
Q ss_pred CCHHHHHHHHHHHhc
Q 009217 489 FGNISLSQALEEIKN 503 (540)
Q Consensus 489 ~d~~~la~ai~~l~~ 503 (540)
.+.+++.++|.+++.
T Consensus 411 v~~e~i~~av~~vm~ 425 (468)
T PLN02207 411 VNANEIETAIRCVMN 425 (468)
T ss_pred ccHHHHHHHHHHHHh
Confidence 356899999999996
No 194
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=70.82 E-value=11 Score=34.89 Aligned_cols=37 Identities=24% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCceEEEEEeccccccccccHHHHH--hHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v--~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.++||++-. +||.+.|- .+|.+.|.+.|++|+|+...
T Consensus 4 ~~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 456888654 37777774 79999999999999999754
No 195
>PLN00414 glycosyltransferase family protein
Probab=70.34 E-value=54 Score=34.65 Aligned_cols=156 Identities=9% Similarity=0.080 Sum_probs=79.9
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEE-Eec--CC-C--hhHHHHHHHHHHHhCCCcEEE
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVF-TGT--NK-L--PSASRALVSFQEELKDGIVIF 416 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi-~G~--g~-~--~~~~~~l~~l~~~~~~~~v~f 416 (540)
..+.|.-.. ++..++++.|.+.... .+.+.+....|...+..|+. +-. +. + ..+.+.+++..+ .....+
T Consensus 242 ~~~WLD~q~-~~sVvyvsfGS~~~~~-~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~---~~g~vv 316 (446)
T PLN00414 242 WNHWLNGFE-PGSVVFCAFGTQFFFE-KDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVK---GRGIVW 316 (446)
T ss_pred HHHHHhcCC-CCceEEEeecccccCC-HHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhc---CCCeEE
Confidence 334454332 2345667778865442 23566666655555666533 321 10 1 012223333222 122333
Q ss_pred EEecChHHHHHHHhcC--CEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--C-CccccceeecC----
Q 009217 417 VDSYDDALLHLIFSGS--DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--H-ESTRFSRFISS---- 487 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~a--Di~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--~-~~~g~~G~l~~---- 487 (540)
.+..++. ++++.+ +.||.-.- -.+.+||+.+|+|.|+... ..|..... . +.-|. |..+.
T Consensus 317 ~~w~PQ~---~vL~h~~v~~fvtH~G----~nS~~Ea~~~GvP~l~~P~----~~dQ~~na~~~~~~~g~-g~~~~~~~~ 384 (446)
T PLN00414 317 EGWVEQP---LILSHPSVGCFVNHCG----FGSMWESLVSDCQIVFIPQ----LADQVLITRLLTEELEV-SVKVQREDS 384 (446)
T ss_pred eccCCHH---HHhcCCccceEEecCc----hhHHHHHHHcCCCEEecCc----ccchHHHHHHHHHHhCe-EEEeccccC
Confidence 3445554 356555 66775432 2678999999999999654 23332110 0 00121 34442
Q ss_pred -CCCHHHHHHHHHHHhcCH-HHHHHHHHHH
Q 009217 488 -TFGNISLSQALEEIKNNP-LSWKRKIKDA 515 (540)
Q Consensus 488 -~~d~~~la~ai~~l~~~~-~~~~~~~~~a 515 (540)
..+.+++++++.+++.++ +..+++.+++
T Consensus 385 ~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a 414 (446)
T PLN00414 385 GWFSKESLRDTVKSVMDKDSEIGNLVKRNH 414 (446)
T ss_pred CccCHHHHHHHHHHHhcCChhhHHHHHHHH
Confidence 146789999999999764 4444444444
No 196
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=68.83 E-value=75 Score=31.04 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=74.9
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEec--CCChhHHHHHHHHHHHhCCCcEEEEEecC--hHHHHHHH-h
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGT--NKLPSASRALVSFQEELKDGIVIFVDSYD--DALLHLIF-S 430 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~--g~~~~~~~~l~~l~~~~~~~~v~f~~~~~--~~~~~~~~-~ 430 (540)
+.+++++.-.+.|.++.|+++++. .+-++.+... |...++ ....+.+..+. .+..+ .|+ .+.+..++ -
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak~---~p~~~~~g~~g~g~~~hl--~~~~l~~~~G~-~~~~V-py~G~~~~~~allgG 151 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAKA---NPGKLTFGSSGPGSSDHL--AAALLAKAAGI-KFTHV-PYDGGAEALTALLGG 151 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHHC---SCCC-EEEESSTTSHHHH--HHHHHHHHHT----EEE-E-SSHHHHHHHHHTT
T ss_pred ceEEEEeCCCccccHHHHHHHHHh---CCCCeEEEecCCCchHHH--HHHHHHHHhCC-ceEEE-EeCCccHHHHHHhCC
Confidence 667788888899998888887753 2334444433 321222 23344555543 34433 342 23333444 3
Q ss_pred cCCEEEECCCCCCCchHHHHHHhcCCce-EEEec--CCCccccceeccC------CccccceeecCCCCHH----HHHHH
Q 009217 431 GSDIILCHSFHDPLLQVPLKALKYGAAP-IAVTS--SDIEFRHFAEFDH------ESTRFSRFISSTFGNI----SLSQA 497 (540)
Q Consensus 431 ~aDi~v~PS~~E~fglv~lEAma~G~pv-I~~~~--~~gg~~e~v~~~~------~~~g~~G~l~~~~d~~----~la~a 497 (540)
..|+.+... -........|..- ++.-. ....++|+-...+ .-..+.|+..+.+-++ .|.++
T Consensus 152 ~vd~~~~~~------~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~~~~~l~~a 225 (274)
T PF03401_consen 152 HVDAAFGSP------GEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDEIVDKLADA 225 (274)
T ss_dssp SSSEEEEEH------HHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HHHHHHHHHH
T ss_pred eeeEEeecH------HHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHHHHHHHHHH
Confidence 356655431 1122333445422 22211 1123333321111 1124557778777664 57778
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCC
Q 009217 498 LEEIKNNPLSWKRKIKDAMLQDFS 521 (540)
Q Consensus 498 i~~l~~~~~~~~~~~~~a~~~~fs 521 (540)
+.+.++||+..+.+.+.+....|.
T Consensus 226 ~~~~~~~pe~~~~~~~~g~~~~~~ 249 (274)
T PF03401_consen 226 IKKALEDPEFQEFLEKMGLEPVYM 249 (274)
T ss_dssp HHHHHT-HHHHHHHHHHTEEEECE
T ss_pred HHHHhCCHHHHHHHHHCCCcCCCC
Confidence 888889999988888877653333
No 197
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=68.10 E-value=13 Score=31.85 Aligned_cols=39 Identities=23% Similarity=0.140 Sum_probs=30.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCe-EEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHL-VEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~-V~vi~p 98 (540)
|||+++... .|+ .+-.+.-...+++++.+.||+ |.|+.-
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 889988764 675 345667888999999999999 577764
No 198
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=68.08 E-value=8.5 Score=35.66 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=28.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||++.|++.- ..-|-.+.+.+|+.+|+++|+.|.+|=
T Consensus 17 ~kvI~v~s~k----gG~GKTt~a~~LA~~la~~G~rVllID 53 (204)
T TIGR01007 17 IKVLLITSVK----PGEGKSTTSANIAVAFAQAGYKTLLID 53 (204)
T ss_pred CcEEEEecCC----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 8888888631 112455688999999999999998874
No 199
>PLN00164 glucosyltransferase; Provisional
Probab=68.02 E-value=1e+02 Score=32.93 Aligned_cols=80 Identities=9% Similarity=0.041 Sum_probs=45.5
Q ss_pred EEEEEecChHHHHHHHhcCCE--EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc---CCccccceeecC-
Q 009217 414 VIFVDSYDDALLHLIFSGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD---HESTRFSRFISS- 487 (540)
Q Consensus 414 v~f~~~~~~~~~~~~~~~aDi--~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~---~~~~g~~G~l~~- 487 (540)
+.+.+..++. ++++.+++ ||.=.-+ .+.+||+++|+|.|+-.. ..|..... .+.-|. |+.+.
T Consensus 341 ~~v~~w~PQ~---~iL~h~~vg~fvtH~Gw----nS~~Eai~~GVP~l~~P~----~~DQ~~Na~~~~~~~gv-G~~~~~ 408 (480)
T PLN00164 341 LVWPTWAPQK---EILAHAAVGGFVTHCGW----NSVLESLWHGVPMAPWPL----YAEQHLNAFELVADMGV-AVAMKV 408 (480)
T ss_pred eEEeecCCHH---HHhcCcccCeEEeeccc----chHHHHHHcCCCEEeCCc----cccchhHHHHHHHHhCe-EEEecc
Confidence 4444555654 45666664 5533212 478999999999998654 23332110 000121 33332
Q ss_pred ------CCCHHHHHHHHHHHhcCH
Q 009217 488 ------TFGNISLSQALEEIKNNP 505 (540)
Q Consensus 488 ------~~d~~~la~ai~~l~~~~ 505 (540)
..+.++++++|.+++.++
T Consensus 409 ~~~~~~~~~~e~l~~av~~vm~~~ 432 (480)
T PLN00164 409 DRKRDNFVEAAELERAVRSLMGGG 432 (480)
T ss_pred ccccCCcCcHHHHHHHHHHHhcCC
Confidence 125689999999999764
No 200
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=67.93 E-value=8.5 Score=32.61 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=28.6
Q ss_pred HHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCcccc
Q 009217 425 LHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRH 470 (540)
Q Consensus 425 ~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e 470 (540)
+..++..+|++|--|.-+..--.+-.++.+|+|+|...+ |...+
T Consensus 61 l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTT--G~~~~ 104 (124)
T PF01113_consen 61 LEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTT--GFSDE 104 (124)
T ss_dssp HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-S--SSHHH
T ss_pred HHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECC--CCCHH
Confidence 456777799999888655544455667889999999877 55443
No 201
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=67.74 E-value=12 Score=32.76 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=31.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||+.|+.... ..|-...++..+++.+.+.|++|+++-+.
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987532 24677788888888898999999999754
No 202
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=67.42 E-value=53 Score=29.54 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEe----cChHHHHHHH-----hcCCEEEEC
Q 009217 368 VFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS----YDDALLHLIF-----SGSDIILCH 438 (540)
Q Consensus 368 KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~----~~~~~~~~~~-----~~aDi~v~P 438 (540)
-|.|++.+.+....+.+.++.++|+. +....+..+.+.+.++ ++.+.+. +++++...+. +.+|++++-
T Consensus 32 ~g~dl~~~l~~~~~~~~~~ifllG~~-~~~~~~~~~~l~~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 32 TGSDLFPDLLRRAEQRGKRIFLLGGS-EEVLEKAAANLRRRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCC-HHHHHHHHHHHHHHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 57788888887776678999999944 3344555666777775 4444443 3333333333 567888875
Q ss_pred C---CCCCCchHHHHHHhcCCceEEEecCCCcccccee
Q 009217 439 S---FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 473 (540)
Q Consensus 439 S---~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~ 473 (540)
- ..|-|..-....+-. .|.-.+ ||.-++..
T Consensus 109 lG~PkQE~~~~~~~~~l~~---~v~i~v--G~~~d~~a 141 (172)
T PF03808_consen 109 LGAPKQERWIARHRQRLPA---GVIIGV--GGAFDFLA 141 (172)
T ss_pred CCCCHHHHHHHHHHHHCCC---CEEEEE--Cchhhhhc
Confidence 3 245544433333322 244445 88777753
No 203
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.15 E-value=1.6e+02 Score=30.33 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=99.2
Q ss_pred EEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCC----hhHHHHHHHHHHHhCCCcEEEEEecC-----hHHHHHHHh
Q 009217 360 CIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL----PSASRALVSFQEELKDGIVIFVDSYD-----DALLHLIFS 430 (540)
Q Consensus 360 ~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~----~~~~~~l~~l~~~~~~~~v~f~~~~~-----~~~~~~~~~ 430 (540)
|.|..+.-+-+....+.+.+..+.+..++|+-+++. ..+.+++.+..+...+++|.|+..-. +++...+-.
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~ 238 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE 238 (483)
T ss_pred eEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence 456777777788999999999989999999987653 34556677777776668888864332 344444445
Q ss_pred cCCE--EEECCC----CCCCchHHHHHHhcCCceEEEecCCCccccceeccC--CccccceeecCCCCHHHHHHHHHHHh
Q 009217 431 GSDI--ILCHSF----HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH--ESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 431 ~aDi--~v~PS~----~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~--~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
..|+ .++.-. .-+..++..+| .++|+|---+ .|-+++-+ .....-+-+..-+|.+.|.+.+.++.
T Consensus 239 ~vdvg~vIlTKlDGhakGGgAlSaVaa--TksPIiFIGt-----GEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~ 311 (483)
T KOG0780|consen 239 TVDVGAVILTKLDGHAKGGGALSAVAA--TKSPIIFIGT-----GEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG 311 (483)
T ss_pred hhccceEEEEecccCCCCCceeeehhh--hCCCEEEEec-----CccccccCCCChHHHHHHHhccccHHHHHHHHHHHh
Confidence 5555 344422 23455666664 4777777544 33332100 00111112344567788888888876
Q ss_pred cCHHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 009217 503 NNPLSWKRKIKDAMLQDFSWDADCNDIHISAY 534 (540)
Q Consensus 503 ~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY 534 (540)
.+--+++.++-..-+|+...+-.| +..+-
T Consensus 312 --~~d~~el~~kl~~gkFtlrd~y~Q-fq~im 340 (483)
T KOG0780|consen 312 --KDDAKELVEKLKQGKFTLRDFYDQ-FQNIM 340 (483)
T ss_pred --hhhHHHHHHHHHhCCccHHHHHHH-HHHHH
Confidence 222233444444478998888777 35543
No 204
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=66.77 E-value=88 Score=33.12 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=50.9
Q ss_pred HHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCcc
Q 009217 405 FQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHEST 479 (540)
Q Consensus 405 l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~ 479 (540)
+.++.+ +|..+.+..++. ++++...+-++=+. +=..+.+||+.+|+|.|+-.. ..|.... +.-+.
T Consensus 321 f~e~~~-~~g~v~~W~PQ~---~iL~h~~vg~fvtH--~G~nS~~Ea~~~GvP~l~~P~----~~DQ~~na~~~~~~~~~ 390 (455)
T PLN02152 321 FRHELE-EVGMIVSWCSQI---EVLRHRAVGCFVTH--CGWSSSLESLVLGVPVVAFPM----WSDQPANAKLLEEIWKT 390 (455)
T ss_pred HHHhcc-CCeEEEeeCCHH---HHhCCcccceEEee--CCcccHHHHHHcCCCEEeccc----cccchHHHHHHHHHhCc
Confidence 334443 566656556654 46777775333333 112578999999999998654 2333211 00012
Q ss_pred ccceeecC---CCCHHHHHHHHHHHhcCHH
Q 009217 480 RFSRFISS---TFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 480 g~~G~l~~---~~d~~~la~ai~~l~~~~~ 506 (540)
|. ++..+ ..+.+++++++.++++|+.
T Consensus 391 G~-~~~~~~~~~~~~e~l~~av~~vm~~~~ 419 (455)
T PLN02152 391 GV-RVRENSEGLVERGEIRRCLEAVMEEKS 419 (455)
T ss_pred eE-EeecCcCCcCcHHHHHHHHHHHHhhhH
Confidence 32 12111 2356899999999997553
No 205
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=66.40 E-value=11 Score=33.21 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=31.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||+|++-+. ..|-......-++..|.+.|++|++.=
T Consensus 1 Mk~LIlYst-----r~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILYST-----RDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEEec-----CCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 789988653 569999999999999999999999874
No 206
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=65.78 E-value=8.1 Score=40.67 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
++++|||++. ||.|.+=..|++.|.++||+|.++..
T Consensus 117 ~~~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 117 GRKRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccCCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 4667998843 77788889999999999999998753
No 207
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=65.50 E-value=9.1 Score=37.79 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 423 ALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 423 ~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
....+.++.|.++++|.-.-++..-+.|||++||.||...
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~ 267 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIIS 267 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEec
Confidence 3456788999999999888888899999999999888864
No 208
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=64.56 E-value=52 Score=31.55 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=61.0
Q ss_pred cccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCC--cEEEEEecChHHHHHHHhcCCEEEECC-
Q 009217 365 VSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDG--IVIFVDSYDDALLHLIFSGSDIILCHS- 439 (540)
Q Consensus 365 ~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~--~v~f~~~~~~~~~~~~~~~aDi~v~PS- 439 (540)
+-.|=...|..|..-+.. .+..++++|.. +.....+++.++..+.. .=+|+++.=.......+..-|++|+..
T Consensus 50 dL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr--~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp 127 (249)
T PTZ00254 50 NLAKTWEKLKLAARVIAAIENPADVVVVSSR--PYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDP 127 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--HHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCC
Confidence 334445667777655543 46778889965 34567777788776520 113555532222223345566666654
Q ss_pred CCCCCchHHHHHHhcCCceEE-EecCCCcccccee
Q 009217 440 FHDPLLQVPLKALKYGAAPIA-VTSSDIEFRHFAE 473 (540)
Q Consensus 440 ~~E~fglv~lEAma~G~pvI~-~~~~~gg~~e~v~ 473 (540)
..|. ..+.||-..|.|+|+ +++ ...++.|+
T Consensus 128 ~~d~--qAI~EA~~lnIPvIal~DT--ds~p~~VD 158 (249)
T PTZ00254 128 RTDH--QAIREASYVNIPVIALCDT--DSPLEYVD 158 (249)
T ss_pred Ccch--HHHHHHHHhCCCEEEEecC--CCCcccCc
Confidence 3444 678999999999999 444 44455554
No 209
>PRK10037 cell division protein; Provisional
Probab=64.55 E-value=8.8 Score=36.95 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=27.5
Q ss_pred ceEEEEEeccccccccccHHHHH--hHHHHHHHHcCCeEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVI 96 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v--~~L~~~L~~~Gh~V~vi 96 (540)
|||+-++.. -||+|+-+ .+|+.+|+++|+.|.+|
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 777777763 48887654 78999999999999988
No 210
>PLN00016 RNA-binding protein; Provisional
Probab=64.25 E-value=6.9 Score=40.25 Aligned_cols=40 Identities=20% Similarity=0.151 Sum_probs=31.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..+||||++++ ..||.|..-..|++.|.++||+|++++..
T Consensus 50 ~~~~~VLVt~~------~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 50 VEKKKVLIVNT------NSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cccceEEEEec------cCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 44478887755 24777777889999999999999999854
No 211
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=64.23 E-value=37 Score=30.37 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=14.2
Q ss_pred hccceeeccccchhhhhh
Q 009217 269 YSNKVVIVSSMHSKGRII 286 (540)
Q Consensus 269 ~ad~vi~vS~~~~~~~~~ 286 (540)
.+|..++.|+..++++..
T Consensus 137 ~~D~y~Vase~~~~~l~~ 154 (169)
T PF06925_consen 137 GVDRYFVASEEVKEELIE 154 (169)
T ss_pred CCCEEEECCHHHHHHHHH
Confidence 368888999988887765
No 212
>PLN02534 UDP-glycosyltransferase
Probab=64.00 E-value=1.1e+02 Score=32.81 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=52.4
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC--ChhHHHHH--HHHHHHhCCCcEEEEEecChHHHHHHHhc
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK--LPSASRAL--VSFQEELKDGIVIFVDSYDDALLHLIFSG 431 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~--~~~~~~~l--~~l~~~~~~~~v~f~~~~~~~~~~~~~~~ 431 (540)
.++++.|.+.. -..+.+.+.+..|...+.+|+.+=..+ .+...+.+ +.+.++....++.+.+..+.. .+++.
T Consensus 285 VvyvsfGS~~~-~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~---~iL~h 360 (491)
T PLN02534 285 VIYACLGSLCR-LVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQV---LILSH 360 (491)
T ss_pred eEEEEeccccc-CCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHH---HHhcC
Confidence 45556676652 233455665554444455665543211 01111111 222222222456555556654 46677
Q ss_pred CCE--EEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 432 SDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 432 aDi--~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
.++ ||.-. -..+++||..+|+|.|+...
T Consensus 361 ~~v~~fvtH~----G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 361 PAIGGFLTHC----GWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred CccceEEecC----ccHHHHHHHHcCCCEEeccc
Confidence 776 55432 23578999999999998654
No 213
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=63.88 E-value=83 Score=33.23 Aligned_cols=114 Identities=15% Similarity=-0.007 Sum_probs=66.2
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhc--CCEEEECCC-CCCCchHHHHHHhc---CCceE
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG--SDIILCHSF-HDPLLQVPLKALKY---GAAPI 459 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~--aDi~v~PS~-~E~fglv~lEAma~---G~pvI 459 (540)
+++++-+ ++.....++..-+..+ -+|.... +..+....+.. .|++++=-+ -+.-|+.+++.+.. ++|||
T Consensus 6 ~iLvVDD--d~~ir~~l~~~L~~~G-~~v~~a~--~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI 80 (464)
T COG2204 6 RILVVDD--DPDIRELLEQALELAG-YEVVTAE--SAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVI 80 (464)
T ss_pred CEEEEeC--CHHHHHHHHHHHHHcC-CeEEEeC--CHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEE
Confidence 3555553 2445555555555433 3444332 22222233333 355555443 36778888887665 68888
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHH
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS 507 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~ 507 (540)
+..- -|.+...|+... .|.-.|+..|.+++.|...+.+.++...+
T Consensus 81 ~~Tg-~g~i~~AV~A~k--~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 81 VMTG-HGDIDTAVEALR--LGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred EEeC-CCCHHHHHHHHh--cCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 8632 244444454332 35556999999999999988888765443
No 214
>PRK09271 flavodoxin; Provisional
Probab=63.31 E-value=15 Score=32.56 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=30.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+++... .+|-.+.++..+++.|.+.|++|.+.-
T Consensus 1 mkv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYAS-----LSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEc-----CCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 788888653 469999999999999999999987654
No 215
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=62.55 E-value=80 Score=29.18 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=62.9
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChHHHHHHH--hcCCEEEECCCCC----CCchHHHHHHh---
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALLHLIF--SGSDIILCHSFHD----PLLQVPLKALK--- 453 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~~~~~~~--~~aDi~v~PS~~E----~fglv~lEAma--- 453 (540)
+.+++++.+. +.....++...+..+ .+.....+ +.++....+ ...|++++-.... ..|+..++.+.
T Consensus 3 ~~~Ilivdd~--~~~~~~l~~~L~~~~--~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~ 78 (216)
T PRK10840 3 NMNVIIADDH--PIVLFGIRKSLEQIE--WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHF 78 (216)
T ss_pred ceEEEEECCc--HHHHHHHHHHHhcCC--CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC
Confidence 3566777643 344555665554432 22222222 222222333 2479988865432 25777777764
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
..+|+|+... ..-.+.+... ...|..||+..+.+++.|.++|..+.+
T Consensus 79 ~~~~iIvls~--~~~~~~~~~a-~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 79 PSLSIIVLTM--NNNPAILSAV-LDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCcEEEEEe--cCCHHHHHHH-HHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 3456666433 2223332211 125778899999999999999988765
No 216
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=61.35 E-value=15 Score=35.18 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=27.7
Q ss_pred ceEEEEEeccccccccccH--HHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSL--ASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~--~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||++.|.+ + .||+ .+.+.+|+.+|++.|..|.+|=
T Consensus 1 M~~iai~s---~---kGGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 1 MKVIAIVS---P---KGGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred CcEEEEec---C---CCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 78888876 2 3555 4678899999999999999984
No 217
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=60.89 E-value=14 Score=36.92 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+..|||++|. .|++|. .++..|++.||+|+++...
T Consensus 2 ~~~~m~I~IiG--------~GaiG~---~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 2 DSETPRIGIIG--------TGAIGG---FYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCcCcEEEEEC--------CCHHHH---HHHHHHHHCCCeEEEEEeC
Confidence 35568999884 377764 4566788899999999864
No 218
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=59.66 E-value=1.9e+02 Score=28.70 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=28.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+=||. .|- -|=.+.+..|.+.|.++||.|-|++-
T Consensus 52 ~viGITG--~PG---aGKSTli~~L~~~l~~~G~rVaVlAV 87 (323)
T COG1703 52 HVIGITG--VPG---AGKSTLIEALGRELRERGHRVAVLAV 87 (323)
T ss_pred cEEEecC--CCC---CchHHHHHHHHHHHHHCCcEEEEEEE
Confidence 6777775 342 36678899999999999999999984
No 219
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=59.06 E-value=13 Score=35.05 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||.+| ||.|.+-..|++.|.+.||+|.++..
T Consensus 1 MkI~II----------GG~G~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVL----------GGTGDQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEE----------cCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence 677665 55566678899999999999988754
No 220
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=58.31 E-value=29 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.286 Sum_probs=23.4
Q ss_pred cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEE
Q 009217 383 RGIQFVFTGTNKLPSASRALVSFQEELKDGIVI 415 (540)
Q Consensus 383 ~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~ 415 (540)
++.+|+++|+.++.+ .+...+++++++ ++|.
T Consensus 63 P~~kfiLIGDsgq~D-peiY~~ia~~~P-~~i~ 93 (100)
T PF09949_consen 63 PERKFILIGDSGQHD-PEIYAEIARRFP-GRIL 93 (100)
T ss_pred CCCcEEEEeeCCCcC-HHHHHHHHHHCC-CCEE
Confidence 478999999987543 456677888887 6765
No 221
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=58.28 E-value=14 Score=31.52 Aligned_cols=36 Identities=28% Similarity=0.188 Sum_probs=25.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||++..+. .++ ...+.++.+.|.+.|++|.|+...
T Consensus 1 k~i~l~vtG------s~~-~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG------SIA-AYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S------SGG-GGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC------HHH-HHHHHHHHHHHhhCCCEEEEEECC
Confidence 688887762 222 233789999999999999998743
No 222
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=57.64 E-value=15 Score=35.41 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
++||||+....-. -+.-+..|.++|.+.| +|.|++|...+
T Consensus 4 ~~M~ILltNDDGi-------~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCNDDGI-------EGEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEECCCCC-------CCHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 4599997766422 1223578888898888 89999997653
No 223
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=57.07 E-value=13 Score=35.29 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.7
Q ss_pred cHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 74 SLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 74 G~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+|.+-..+|+.|.++||+|.+|-..
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 66788899999999999999999643
No 224
>PRK09739 hypothetical protein; Provisional
Probab=56.81 E-value=27 Score=32.21 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=29.4
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+||||+|... |.. .|=....+..+.+++.+.||+|+++-.
T Consensus 3 mmkiliI~~s--p~~-~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 3 SMRIYLVWAH--PRH-DSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CceEEEEEcC--CCC-CCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 5899999874 532 233556677777888889999998854
No 225
>PRK06756 flavodoxin; Provisional
Probab=56.69 E-value=23 Score=30.83 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=31.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||++|... .+|..+.++..+++.|.+.|++|.++-.
T Consensus 2 mkv~IiY~S-----~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFAS-----MSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEEC-----CCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 788888642 4699999999999999999999987743
No 226
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=55.66 E-value=21 Score=32.82 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=27.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcC-CeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G-h~V~vi~ 97 (540)
||||+|..+ |....+-.......+.+++.+.| |+|+++=
T Consensus 1 mkiLvI~as--p~~~~S~s~~l~~~~~~~~~~~~~~~v~~~d 40 (199)
T PF02525_consen 1 MKILVINAS--PRPEGSFSRALADAFLEGLQEAGPHEVEIRD 40 (199)
T ss_dssp EEEEEEE----SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEEcC--CCCccCHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 899999874 54211333666788889999999 9998874
No 227
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=55.25 E-value=68 Score=30.10 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=59.6
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChH-HHHHHHhc-CC
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDA-LLHLIFSG-SD 433 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~-~~~~~~~~-aD 433 (540)
|++.+..+-.+++.++.|.+++..+ ++.-++.|.-........++.+|++++..-+.-+.+.|+. .+.++... -+
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l---~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~ 137 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRL---KVDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFE 137 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhC---cccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCe
Confidence 4565666668888899999998887 3778888854433445678999999876555556666654 44444444 67
Q ss_pred EEEECCCCCCCc
Q 009217 434 IILCHSFHDPLL 445 (540)
Q Consensus 434 i~v~PS~~E~fg 445 (540)
+.|+..-.++++
T Consensus 138 ~~Iv~Vsa~gL~ 149 (223)
T COG2102 138 AIIVAVSAEGLD 149 (223)
T ss_pred EEEEEEeccCCC
Confidence 777766555555
No 228
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=54.59 E-value=2.4e+02 Score=30.17 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=48.1
Q ss_pred CcEEEEEecChHHHHHHHhcCCE--EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC---Cccccceeec
Q 009217 412 GIVIFVDSYDDALLHLIFSGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH---ESTRFSRFIS 486 (540)
Q Consensus 412 ~~v~f~~~~~~~~~~~~~~~aDi--~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~---~~~g~~G~l~ 486 (540)
.++.+.+..++.+ +++...+ ||.-. =-.+.+||+.+|+|.|+... ..|...... +.-|. |..+
T Consensus 338 rg~vv~~W~PQ~~---iL~h~~vg~FitH~----G~nS~~Eal~~GVP~l~~P~----~~DQ~~na~~~~~~~g~-gv~~ 405 (481)
T PLN02992 338 RGFVVPSWAPQAE---ILAHQAVGGFLTHC----GWSSTLESVVGGVPMIAWPL----FAEQNMNAALLSDELGI-AVRS 405 (481)
T ss_pred CCEEEeecCCHHH---HhCCcccCeeEecC----chhHHHHHHHcCCCEEecCc----cchhHHHHHHHHHHhCe-eEEe
Confidence 4566556666543 5666665 55332 22578999999999999654 223221000 00122 3343
Q ss_pred C----CCCHHHHHHHHHHHhcCH
Q 009217 487 S----TFGNISLSQALEEIKNNP 505 (540)
Q Consensus 487 ~----~~d~~~la~ai~~l~~~~ 505 (540)
+ ..+.++++++|.+++.++
T Consensus 406 ~~~~~~~~~~~l~~av~~vm~~~ 428 (481)
T PLN02992 406 DDPKEVISRSKIEALVRKVMVEE 428 (481)
T ss_pred cCCCCcccHHHHHHHHHHHhcCC
Confidence 2 246789999999998763
No 229
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=54.26 E-value=17 Score=34.93 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=28.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+.... |=.+..+..|.++|.+.| +|+|++|...+
T Consensus 1 M~ILltNDD-------Gi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTNDD-------GIHSPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECCC-------CCCCHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 899976654 222345688899999988 99999997653
No 230
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=53.85 E-value=27 Score=31.17 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=33.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+|+.|+.. +..|=.+.+..|.+.|.++|+.|-+|=-
T Consensus 1 m~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH 38 (161)
T COG1763 1 MMKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKH 38 (161)
T ss_pred CCcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEe
Confidence 4899999873 5678999999999999999999999953
No 231
>PRK05920 aromatic acid decarboxylase; Validated
Probab=53.32 E-value=29 Score=32.25 Aligned_cols=39 Identities=23% Similarity=0.113 Sum_probs=28.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
+++||++-.+. |........+.+.|.+.|++|+|+....
T Consensus 2 ~~krIllgITG-------siaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 2 KMKRIVLAITG-------ASGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCCEEEEEEeC-------HHHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 34678766541 2333567789999999999999998543
No 232
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=52.87 E-value=1.2e+02 Score=27.77 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=51.8
Q ss_pred HHHHHHHHHHH---HhcCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEEec-ChHH-HH----------------
Q 009217 370 LENLKAVVRGA---KMRGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDSY-DDAL-LH---------------- 426 (540)
Q Consensus 370 ~~~Li~A~~~l---~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~~~-~~~~-~~---------------- 426 (540)
+..|.+|+.-+ ...+.+++++|+.+ .....+++.++..+. -+-++++|. .... ..
T Consensus 39 ~~~L~~A~~~i~~i~~~~g~iLfV~t~~--~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k 116 (193)
T cd01425 39 LEKLRLALNFIANIAAKGGKILFVGTKP--QAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEK 116 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555433 33578899999653 455666666665532 111345443 2211 10
Q ss_pred ------HHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEE
Q 009217 427 ------LIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV 461 (540)
Q Consensus 427 ------~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~ 461 (540)
.....-|++++-...+. ..++.||...|.|+|+-
T Consensus 117 ~~~g~~~~~~~Pdlviv~~~~~~-~~ai~Ea~~l~IP~I~i 156 (193)
T cd01425 117 NLGGIKDMFRLPDLVIVLDPRKE-HQAIREASKLGIPVIAI 156 (193)
T ss_pred hcccccccccCCCEEEEeCCccc-hHHHHHHHHcCCCEEEE
Confidence 13345677777654322 57789999999999985
No 233
>PLN02778 3,5-epimerase/4-reductase
Probab=52.36 E-value=22 Score=35.24 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=26.6
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEE
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi 96 (540)
+.+..||||+. ||.|..=..|++.|.++||+|++.
T Consensus 5 ~~~~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 5 AGSATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 44566998853 566666788999999999999754
No 234
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=51.47 E-value=16 Score=36.62 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=31.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
|||+++.. |.....--...+..|.++.+++||+|.++.|..
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 79999874 443333344577889999999999999999864
No 235
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=51.26 E-value=2.2e+02 Score=26.90 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=29.7
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
|++|+-...|... +++||.-.+.|.|+- |+ ...++.+.
T Consensus 175 D~vvvln~~e~~s-AilEA~K~~IPTIgIVDt--N~~P~liT 213 (251)
T KOG0832|consen 175 DLVVVLNPEENHS-AILEAAKMAIPTIGIVDT--NCNPELIT 213 (251)
T ss_pred ceeEecCcccccH-HHHHHHHhCCCeEEEecC--CCCcccee
Confidence 8988888888854 789999999999984 33 45666665
No 236
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=51.21 E-value=78 Score=29.29 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=28.5
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEe
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVIL 97 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~ 97 (540)
....|||+.|++.- ..=|-.+.+.+||.+|++ .|+.|.+|=
T Consensus 31 ~~~~~~vi~v~s~k----gG~GkSt~a~nLA~~la~~~g~~VLlvD 72 (207)
T TIGR03018 31 RKKNNNLIMVTSSL----PGEGKSFTAINLAISLAQEYDKTVLLID 72 (207)
T ss_pred cCCCCeEEEEECCC----CCCCHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44568888887621 112455667889999996 699998884
No 237
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=50.83 E-value=25 Score=34.29 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=29.4
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..+|||++. ||.|.+-..|++.|...||+|.++=-.
T Consensus 25 ~~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~Dn~ 60 (350)
T KOG1429|consen 25 SQNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALDNY 60 (350)
T ss_pred CCCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEecc
Confidence 345889853 788899999999999999999887543
No 238
>PLN02206 UDP-glucuronate decarboxylase
Probab=50.70 E-value=23 Score=37.42 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=28.6
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.+.+.|||++. ||.|.+=..|++.|.++||+|.++.
T Consensus 115 ~~~~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 115 LKRKGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccCCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 44567998843 6777777899999999999998874
No 239
>CHL00194 ycf39 Ycf39; Provisional
Probab=49.84 E-value=21 Score=35.67 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=21.6
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||.|..=..|++.|.++||+|++++..
T Consensus 7 GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 7 GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 556666678889999999999998743
No 240
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=49.61 E-value=19 Score=35.89 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.0
Q ss_pred ceEEEEEeccccccccccHHHHHhH--HHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTG--LSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~--L~~~L~~~Gh~V~vi~p~ 99 (540)
|||++++. -||+|+-+.. +|-+++++|+.|-+++..
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~D 38 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTD 38 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESS
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecC
Confidence 78999885 4888877766 667788999999999753
No 241
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=49.56 E-value=1.1e+02 Score=24.21 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCCC-CCCchHHHHHHh---cCCceEEEecCCCccc
Q 009217 396 PSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSFH-DPLLQVPLKALK---YGAAPIAVTSSDIEFR 469 (540)
Q Consensus 396 ~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~~-E~fglv~lEAma---~G~pvI~~~~~~gg~~ 469 (540)
+...+.++...+..+...|.. .-+.++....+ ...|++++-... ..-|+.+++..+ ..+|+|+-.. .....
T Consensus 8 ~~~~~~l~~~l~~~~~~~v~~--~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~-~~~~~ 84 (112)
T PF00072_consen 8 PEIRELLEKLLERAGYEEVTT--ASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTD-EDDSD 84 (112)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--ESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEES-STSHH
T ss_pred HHHHHHHHHHHHhCCCCEEEE--ECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecC-CCCHH
Confidence 445556666555332112322 22333222332 335777776543 345555555543 3566665432 02212
Q ss_pred cceeccCCccccceeecCCCCHHHHHHHHH
Q 009217 470 HFAEFDHESTRFSRFISSTFGNISLSQALE 499 (540)
Q Consensus 470 e~v~~~~~~~g~~G~l~~~~d~~~la~ai~ 499 (540)
+....- ..|..|++..|.+++.|.++|+
T Consensus 85 ~~~~~~--~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 85 EVQEAL--RAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp HHHHHH--HTTESEEEESSSSHHHHHHHHH
T ss_pred HHHHHH--HCCCCEEEECCCCHHHHHHhhC
Confidence 221111 2577889999999999988874
No 242
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=49.23 E-value=27 Score=35.14 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=38.0
Q ss_pred CCCCCCceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEeecCCCC
Q 009217 51 GSKKNGFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKYACM 103 (540)
Q Consensus 51 ~~~~~~mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~p~~~~~ 103 (540)
+..+.+..|+-|.. ..+||.|+ ++..|++.|+++|+.|.|++..|+..
T Consensus 29 ~~~~~~vpVIsVGN-----ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 29 KSYRLPVPVISVGN-----LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred ccCCCCCcEEEEcc-----cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC
Confidence 45566777887765 35677765 78899999999999999999998853
No 243
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=48.83 E-value=33 Score=29.57 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=28.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi 96 (540)
|||+++-.. .+|-.+.++..+++.|...|++|.++
T Consensus 1 M~i~IiY~S-----~tGnTe~iA~~ia~~l~~~g~~v~~~ 35 (140)
T TIGR01754 1 MRILLAYLS-----LSGNTEEVAFMIQDYLQKDGHEVDIL 35 (140)
T ss_pred CeEEEEEEC-----CCChHHHHHHHHHHHHhhCCeeEEec
Confidence 788877642 56999999999999999999998743
No 244
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=48.73 E-value=34 Score=33.24 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=27.5
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.++-+.||. .++|+| .++++.|+++||+|.++...
T Consensus 5 ~~~~~lITG------ASsGIG---~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 5 KGKTALITG------ASSGIG---AELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCcEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeCc
Confidence 345555665 368888 78999999999999999864
No 245
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=48.39 E-value=40 Score=33.73 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=36.3
Q ss_pred CCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEE
Q 009217 36 EGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi 96 (540)
-...++...+.+... ...+.+||+-|+.. .||+|+. +.+|+.+|+++|..|.++
T Consensus 73 ~~~~~l~~~l~~~~~-~~~~~~~vIav~~~------KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 73 EAEGWLVELLADLDQ-SPPARGVVVAVIGG------RGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred CCHHHHHHHHHhhcc-CCCCCceEEEEEcC------CCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 345555555665543 33445788877762 3666554 588999999999998877
No 246
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.22 E-value=2.2e+02 Score=27.43 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCC-----------ChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEEC
Q 009217 370 LENLKAVVRGAKMRGIQFVFTGTNK-----------LPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCH 438 (540)
Q Consensus 370 ~~~Li~A~~~l~~~~~~lvi~G~g~-----------~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~P 438 (540)
-+.+++.++.+.+.+++++..|.-. ..+--+.|.+.+++++. -.+...++...+..+...+|++=+|
T Consensus 28 ~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl--~~~Tev~d~~~v~~~~e~vdilqIg 105 (250)
T PRK13397 28 YDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGL--LSVSEIMSERQLEEAYDYLDVIQVG 105 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCC--CEEEeeCCHHHHHHHHhcCCEEEEC
Confidence 4467777777777788888877421 11123456666777652 2234566777777777789999999
Q ss_pred CC-CCCCchHHHHHH-hcCCceEEEe
Q 009217 439 SF-HDPLLQVPLKAL-KYGAAPIAVT 462 (540)
Q Consensus 439 S~-~E~fglv~lEAm-a~G~pvI~~~ 462 (540)
|+ .-.+. ++++. ..|+||+.++
T Consensus 106 s~~~~n~~--LL~~va~tgkPVilk~ 129 (250)
T PRK13397 106 ARNMQNFE--FLKTLSHIDKPILFKR 129 (250)
T ss_pred cccccCHH--HHHHHHccCCeEEEeC
Confidence 97 34444 45554 6799888875
No 247
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=47.73 E-value=1e+02 Score=27.88 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEE-EEEecChHHHH---HHH--hcCCEEEEC---C
Q 009217 369 FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI-FVDSYDDALLH---LIF--SGSDIILCH---S 439 (540)
Q Consensus 369 G~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~-f~~~~~~~~~~---~~~--~~aDi~v~P---S 439 (540)
|.|++.+.++...+.+.++.++|..+ ...+...+.+.++++.-+|. ..+.+++++.. +.. +.+|++++. .
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~~-~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGKP-DVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 78888888887766788999999543 34555666777777632322 22444433211 222 557887774 2
Q ss_pred CCCCCchHHHHHHhcCCceEEEecCCCcccccee
Q 009217 440 FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 473 (540)
Q Consensus 440 ~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~ 473 (540)
..|-|-.-... ....+ |...+ ||.-|+..
T Consensus 112 kQE~~~~~~~~--~~~~~-v~~gv--Gg~fd~~a 140 (177)
T TIGR00696 112 KQEIWMRNHRH--LKPDA-VMIGV--GGSFDVFS 140 (177)
T ss_pred HhHHHHHHhHH--hCCCc-EEEEe--ceeeeecc
Confidence 35654432211 22332 33335 88777653
No 248
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=47.62 E-value=25 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHHcCCeEEEEeec
Q 009217 76 ASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|.+....++.|.+.|++|+||.|.
T Consensus 22 G~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 22 GKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CHHHHHHHHHHHhCCCEEEEEcCc
Confidence 567788999999999999999764
No 249
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=47.26 E-value=2.1e+02 Score=25.44 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=46.2
Q ss_pred cCCEEEECCC-CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 431 GSDIILCHSF-HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 431 ~aDi~v~PS~-~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
..|++++-.. .+.-|+..++.+....|+|+... -...+..... ...|..+++..|.+.+.|.++|..+..
T Consensus 47 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~--~~~~~~~~~~-~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 47 GVQVCICDISMPDISGLELLSQLPKGMATIMLSV--HDSPALVEQA-LNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEEC--CCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3688888653 35567777888777777777543 2222322111 014667899999999999999998764
No 250
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=47.14 E-value=28 Score=31.49 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=29.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+++... ..|-...++..+++.|.. |++|.++-.
T Consensus 1 MkilIvY~S-----~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYSS-----RDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEEC-----CCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 788888653 579999999999999988 999988753
No 251
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=47.02 E-value=8.6 Score=41.19 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=22.2
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
++=-..+..++++|+++||+||+++|..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 4556778999999999999999999854
No 252
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.81 E-value=3.3e+02 Score=27.71 Aligned_cols=103 Identities=20% Similarity=0.055 Sum_probs=65.0
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCC-----------hhHHHHHHHHHHHhCCCcEEEEEecChHH
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL-----------PSASRALVSFQEELKDGIVIFVDSYDDAL 424 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~-----------~~~~~~l~~l~~~~~~~~v~f~~~~~~~~ 424 (540)
++++.+|- ..--..+.+++.++.+.+.+++++-.|.-.. .+-.+.+++..++++. -.+...++.+.
T Consensus 101 ~l~vIAGP-CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl--~~~tev~d~~~ 177 (352)
T PRK13396 101 PVVVVAGP-CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGL--GIITEVMDAAD 177 (352)
T ss_pred eEEEEEeC-CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCC--cEEEeeCCHHH
Confidence 45555553 2233455788888888877888887664210 1112345555556642 22455667777
Q ss_pred HHHHHhcCCEEEECCC-CCCCchHHHHHHhcCCceEEEe
Q 009217 425 LHLIFSGSDIILCHSF-HDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 425 ~~~~~~~aDi~v~PS~-~E~fglv~lEAma~G~pvI~~~ 462 (540)
+..+...+|++=+||+ ...|.| +-++-..|+||+.++
T Consensus 178 v~~~~~~~d~lqIga~~~~n~~L-L~~va~t~kPVllk~ 215 (352)
T PRK13396 178 LEKIAEVADVIQVGARNMQNFSL-LKKVGAQDKPVLLKR 215 (352)
T ss_pred HHHHHhhCCeEEECcccccCHHH-HHHHHccCCeEEEeC
Confidence 7666677999999998 466665 334457899888875
No 253
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=46.67 E-value=30 Score=32.89 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=27.3
Q ss_pred ceEEEEEeccccccccccHHHHH--hHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v--~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+.|+.. -||+|+.+ .+|+.+|+++|..|.++=
T Consensus 1 M~iI~v~n~------KGGvGKTT~a~nLA~~la~~G~~VlliD 37 (231)
T PRK13849 1 MKLLTFCSF------KGGAGKTTALMGLCAALASDGKRVALFE 37 (231)
T ss_pred CeEEEEECC------CCCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 678777763 48888764 668899999999998874
No 254
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=46.59 E-value=2.8e+02 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=26.6
Q ss_pred cCCEEEECCC-CCCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 431 GSDIILCHSF-HDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 431 ~aDi~v~PS~-~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
.-|++++-.. .|. .++.||...|.|+|+- |+ ...++.|+
T Consensus 157 ~Pd~iii~d~~~~~--~ai~Ea~kl~IPiIaivDT--n~dp~~Id 197 (258)
T PRK05299 157 LPDALFVVDPNKEH--IAVKEARKLGIPVVAIVDT--NCDPDGVD 197 (258)
T ss_pred CCCEEEEeCCCccH--HHHHHHHHhCCCEEEEeeC--CCCCcccc
Confidence 4677777654 344 7789999999999984 33 44455454
No 255
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=46.09 E-value=44 Score=34.56 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCCCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEe
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~ 97 (540)
..++++|+-|+.. -||+|+- +.+||.+|+.+|+.|.+|=
T Consensus 102 ~~~~~~vIav~n~------KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 102 DDKNPVVLAVMSH------KGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCCCceEEEEecC------CCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3455788888762 4777764 5778899999999998873
No 256
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=45.83 E-value=26 Score=33.80 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=26.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+....-.. .-| +..|+++|.+ +|+|+|++|...+
T Consensus 1 M~ILvtNDDGi~---apG----l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGIN---AEG----INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCCC---Chh----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 899977765321 123 6778888865 6899999997654
No 257
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=45.66 E-value=31 Score=35.32 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=27.9
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+||||+. ||.|.+=..|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT----------GAGGFIASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEe
Confidence 55898843 67777789999999999999998864
No 258
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=45.34 E-value=34 Score=33.11 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+++ ||.+. -..|++.|.++||+|.+.+.
T Consensus 1 m~ILvl----------GGT~e-gr~la~~L~~~g~~v~~s~~ 31 (256)
T TIGR00715 1 MTVLLM----------GGTVD-SRAIAKGLIAQGIEILVTVT 31 (256)
T ss_pred CeEEEE----------echHH-HHHHHHHHHhCCCeEEEEEc
Confidence 677765 66665 89999999999999988764
No 259
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=45.25 E-value=2.3e+02 Score=25.43 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEE
Q 009217 184 KQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLS 220 (540)
Q Consensus 184 ~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T 220 (540)
.+||+|-++...+++...++...++--+..+.|+|+-
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 6899999998666554444433221122237787764
No 260
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=45.23 E-value=49 Score=34.25 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=28.6
Q ss_pred CCCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi 96 (540)
..+++|+-|+.. -||+|+. +.+|+.+|+++|+.|-+|
T Consensus 103 ~~~~~vIai~n~------KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 103 DVFPPVIGVAAH------KGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CCCCeEEEEECC------CCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 344788877762 4888765 578899999999999888
No 261
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=44.88 E-value=91 Score=28.89 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=25.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcC--CeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG--HLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G--h~V~vi~p~~ 100 (540)
|||+++++ |-|.....+.+++.+.+ ++|.++.+..
T Consensus 2 ~ki~vl~s---------g~gs~~~~ll~~~~~~~~~~~I~~vvs~~ 38 (200)
T PRK05647 2 KRIVVLAS---------GNGSNLQAIIDACAAGQLPAEIVAVISDR 38 (200)
T ss_pred ceEEEEEc---------CCChhHHHHHHHHHcCCCCcEEEEEEecC
Confidence 89999885 23567788888888865 5666655543
No 262
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=44.84 E-value=27 Score=33.63 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=26.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+....-. ..-| +..|.++|++ +|+|.|++|...+
T Consensus 1 M~ILlTNDDGi---~a~G----i~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI---TSPG----IIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC---CCHH----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 89997766421 1123 5777888865 5899999997654
No 263
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=44.73 E-value=66 Score=27.13 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=29.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcC-CeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G-h~V~vi~p~ 99 (540)
||+.++.++ +|+.. =-+.....+++++.++| ++|.|+.-.
T Consensus 1 m~~~Ivvt~-ppYg~--q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTG-PPYGT--ESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEec-CCCcc--HHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 788888775 66521 34567889999999997 688888754
No 264
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.69 E-value=36 Score=33.86 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=26.9
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..+|||.+|. .|.+-..+++.|.+.||+|+++...
T Consensus 2 ~~~m~I~iiG-----------~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILG-----------AGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEEC-----------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468988873 4556688999999999999887643
No 265
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=44.65 E-value=42 Score=33.54 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=35.5
Q ss_pred CCCCceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
.+.+..|+.|.. ..+||.|+ ++..|++.|.++|+.|.|++..|+.
T Consensus 24 ~~~~vPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 24 KRAPVPVVIVGN-----LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred ccCCCCEEEEec-----cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 445666777664 35677765 6888999999999999999999886
No 266
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=44.39 E-value=40 Score=29.49 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=30.8
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.|||+++... .+|..+.++..++..|.+.|++|.+..
T Consensus 1 M~ki~Ivy~S-----~tGnTe~vA~~i~~~l~~~~~~~~~~~ 37 (151)
T COG0716 1 MMKILIVYGS-----RTGNTEKVAEIIAEELGADGFEVDIDI 37 (151)
T ss_pred CCeEEEEEEc-----CCCcHHHHHHHHHHHhccCCceEEEee
Confidence 3789988764 569999999999999999999995443
No 267
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=44.37 E-value=1.7e+02 Score=27.53 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=33.3
Q ss_pred ecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 419 SYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
..+..+...+++.||++|....+ ..+-|+++|+|+|+-+.
T Consensus 245 ~~~~~~~~~~~~~~~~~Is~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 245 SLSPDELLELISQADLVISMRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred CCCHHHHHHHHhcCCEEEecCCH-----HHHHHHHcCCCEEEEec
Confidence 44667778999999999998885 56889999999998653
No 268
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=44.31 E-value=38 Score=34.27 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=36.4
Q ss_pred CCCCCCceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 51 GSKKNGFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 51 ~~~~~~mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
+..+.+..|+.|.. ..+||.|+ ++.-|++.|+++|+.|.|++..|+.
T Consensus 50 ~~~~~pvPVIsVGN-----itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 50 KSVRLGVPVVVVGN-----VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred ccccCCCCEEEECC-----ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 33455666776654 35677765 6888999999999999999999985
No 269
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=44.11 E-value=28 Score=33.38 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=27.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+-... |=-+.-+..|+++|. .+++|+|++|...+
T Consensus 1 mrILlTNDD-------Gi~a~Gi~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTNDD-------GIHAPGIRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecCC-------ccCCHHHHHHHHHHh-hCCCEEEEccCCCC
Confidence 899976654 222333577888888 88999999997653
No 270
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=44.02 E-value=35 Score=33.73 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=27.6
Q ss_pred CCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEe
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~ 97 (540)
.+|||+-|+ . -||+|.. +.+|+-+|+++|+.|-+|=
T Consensus 2 ~~~~~iai~-~------KGGvGKTt~~~nLa~~la~~g~kVLliD 39 (295)
T PRK13234 2 SKLRQIAFY-G------KGGIGKSTTSQNTLAALVEMGQKILIVG 39 (295)
T ss_pred CcceEEEEE-C------CCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457877664 1 3777765 5889999999999998883
No 271
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=43.45 E-value=2.3e+02 Score=28.98 Aligned_cols=113 Identities=9% Similarity=0.108 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCC-CCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHH--------
Q 009217 337 TVCKVTLQQQLGLSK-DASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQE-------- 407 (540)
Q Consensus 337 ~~~~~~lr~~~gl~~-~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~-------- 407 (540)
...+.++.+++|++. .++...+...+--.+. +..+++++.... ..+.++|.+ |.. ...+++...
T Consensus 165 ~~~~~~~~~~lg~~~~~~~~~~vslF~Ye~~~--l~~ll~~~~~~~-~pv~llvp~-g~~---~~~~~~~~~~~~~~~g~ 237 (374)
T PF10093_consen 165 PAARAAFLRRLGLPEPEPGALRVSLFCYENAA--LASLLDAWAASP-KPVHLLVPE-GRA---LNSLAAWLGDALLQAGD 237 (374)
T ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEEeCCchH--HHHHHHHHhcCC-CCeEEEecC-Ccc---HHHHHHHhccccccCcc
Confidence 345778888999963 2233333322322222 667888777442 467788777 532 222322111
Q ss_pred --HhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEE
Q 009217 408 --ELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV 461 (540)
Q Consensus 408 --~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~ 461 (540)
..+.-.++.+..++.+....++.+||+-++=-. = +.+-|+-+|+|-|=-
T Consensus 238 ~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE--D---SfVRAqwAgkPFvWh 288 (374)
T PF10093_consen 238 SWQRGNLTLHVLPFVPQDDYDRLLWACDFNFVRGE--D---SFVRAQWAGKPFVWH 288 (374)
T ss_pred ccccCCeEEEECCCCCHHHHHHHHHhCccceEecc--h---HHHHHHHhCCCceEe
Confidence 111124556667789999999999999776422 1 457899999976653
No 272
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=43.14 E-value=30 Score=33.60 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=27.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+....-. -+.-+..|.++|.+.| +|+|++|...+
T Consensus 1 M~ILlTNDDGi-------~apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGV-------HSPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCC-------CCHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 79997766422 1233577888888887 89999997654
No 273
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=42.95 E-value=28 Score=34.39 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=25.2
Q ss_pred ceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||++.. -||+|+ .+.+|+.+|+++|+.|.+|=
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID 35 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIG 35 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7766442 377775 46789999999999998884
No 274
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=42.89 E-value=22 Score=34.47 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.8
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
+||.|-+=..|...|.+.||+|++++.+.+
T Consensus 4 TGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 4 TGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred eccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 589999999999999999999999996544
No 275
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=41.87 E-value=33 Score=33.16 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=25.6
Q ss_pred ceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||++-|+. -||+|+ .+.+||.+|+++|+.|-+|=
T Consensus 1 m~~iav~~-------KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 1 MRQIAIYG-------KGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred CcEEEEEe-------CCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 66665652 277665 56889999999999998883
No 276
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=41.65 E-value=34 Score=32.98 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=27.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+....-. -+.-+..|.++|.+. |+|+|++|...+
T Consensus 1 M~ILlTNDDGi-------~a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGI-------HAPGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCC-------CChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 79997766421 123367888899888 799999997653
No 277
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=41.62 E-value=39 Score=34.90 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=29.1
Q ss_pred CCCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEe
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~ 97 (540)
..+|+|+.|+.. -||+|+- +.+||.+|+++|+.|.+|=
T Consensus 101 g~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID 140 (387)
T TIGR03453 101 GEHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAID 140 (387)
T ss_pred CCCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 356888888763 4777655 5778899999999998884
No 278
>PRK06703 flavodoxin; Provisional
Probab=41.38 E-value=54 Score=28.56 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=30.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+++... ..|-.+.++..+++.|.+.|++|.++-.
T Consensus 2 mkv~IiY~S-----~tGnT~~iA~~ia~~l~~~g~~v~~~~~ 38 (151)
T PRK06703 2 AKILIAYAS-----MSGNTEDIADLIKVSLDAFDHEVVLQEM 38 (151)
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCceEEEeh
Confidence 677777542 4699999999999999999999988753
No 279
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.28 E-value=28 Score=32.39 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=30.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
|..++++. +|- .|-.++..+|+++|.+++|+|..+...|
T Consensus 1 mpLiIlTG--yPg---sGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 1 MPLIILTG--YPG---SGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred CceEEEec--CCC---CCchHHHHHHHHHHHHhhhhccccchhh
Confidence 45566664 562 4778999999999999999998887544
No 280
>CHL00175 minD septum-site determining protein; Validated
Probab=41.03 E-value=43 Score=32.72 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=26.4
Q ss_pred ceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi 96 (540)
+||+.|+.. .||+| +.+.+|+.+|++.|+.|.+|
T Consensus 15 ~~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITSG------KGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 477777762 36655 56788999999999998888
No 281
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=40.66 E-value=1.6e+02 Score=26.96 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=24.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCC--eEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH--LVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh--~V~vi~p~~ 100 (540)
|||+++++ |-|.....+.+++++.++ +|.++.+..
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~~ 37 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISNK 37 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEECC
Confidence 68888875 345677888888888766 566555554
No 282
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=40.62 E-value=40 Score=35.10 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=28.1
Q ss_pred CceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEE
Q 009217 56 GFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi 96 (540)
+|+|+-|+.. -||+|+- +.+|+.+|+.+|+.|.+|
T Consensus 120 ~~~vIav~n~------KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNF------KGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcC------CCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 5888888762 4777765 678899999999999888
No 283
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=40.54 E-value=4e+02 Score=26.83 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=25.4
Q ss_pred CCEEEECCC-CCCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 432 SDIILCHSF-HDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
=|++++-.- .| -.++.||...|.|+|+- |+ ...++.|+
T Consensus 153 Pd~viv~d~~~e--~~AI~EA~kl~IPvIaivDT--n~dp~~Id 192 (326)
T PRK12311 153 PDLLFVIDTNKE--DIAIQEAQRLGIPVAAIVDT--NCDPDGIT 192 (326)
T ss_pred CCEEEEeCCccc--hHHHHHHHHcCCCEEEEeeC--CCCccccc
Confidence 566665543 44 37889999999999984 33 44455554
No 284
>PRK05723 flavodoxin; Provisional
Probab=40.51 E-value=50 Score=29.03 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=29.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||.++... .+|-.+.+...|++.|.+.|++|.++.
T Consensus 1 ~~i~I~ygS-----~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSGS-----VYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEEc-----CchHHHHHHHHHHHHHHHCCCceeecC
Confidence 677777442 579999999999999999999998753
No 285
>PRK05693 short chain dehydrogenase; Provisional
Probab=40.43 E-value=42 Score=32.46 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=24.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 1 mk~vlItG------asggiG---~~la~~l~~~G~~V~~~~r 33 (274)
T PRK05693 1 MPVVLITG------CSSGIG---RALADAFKAAGYEVWATAR 33 (274)
T ss_pred CCEEEEec------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 56666764 357777 5677888999999987764
No 286
>PLN02572 UDP-sulfoquinovose synthase
Probab=40.39 E-value=40 Score=35.59 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=26.6
Q ss_pred CCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 50 SGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 50 ~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.+++.+.|+||+ + ||.|-.=..|++.|.++|++|.++-
T Consensus 41 ~~~~~~~k~VLV-T---------GatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 41 SSSSSKKKKVMV-I---------GGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCccccCCEEEE-E---------CCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 445566677764 3 4444444778899999999998874
No 287
>PRK04155 chaperone protein HchA; Provisional
Probab=40.38 E-value=64 Score=31.81 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=30.2
Q ss_pred CCCceEEEEEecccccc-cccc---HHHHHhHH---HHHHHHcCCeEEEEeecC
Q 009217 54 KNGFHIIHICTEMDPLV-SIGS---LASYVTGL---SGALQRKGHLVEVILPKY 100 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~-~~GG---~~~~v~~L---~~~L~~~Gh~V~vi~p~~ 100 (540)
+.++|||+|++...-.. ..|- .|..-.++ ...|.+.|++|++++|..
T Consensus 47 ~~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 47 RGGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 34579999998654321 1122 23333343 467889999999999864
No 288
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=40.24 E-value=25 Score=37.45 Aligned_cols=126 Identities=19% Similarity=0.158 Sum_probs=75.9
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCCHHHHHHHH------HHHHhc-----CcEEEEEecCC-Chh--HHHHHHHHHH-
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVV------RGAKMR-----GIQFVFTGTNK-LPS--ASRALVSFQE- 407 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~------~~l~~~-----~~~lvi~G~g~-~~~--~~~~l~~l~~- 407 (540)
+.+++|...+++...=+-+-|++.+|. .|+..+ .++++. --+.+++| |. -|. ....+.++..
T Consensus 551 le~e~~v~inp~smFDiqVKRIHEYKR--QllN~l~vi~~y~riK~e~~k~fvprtvm~G-GKaapgY~mAK~Iiklit~ 627 (843)
T KOG2099|consen 551 LEKEYGVKINPSSMFDIQVKRIHEYKR--QLLNCLHVIYLYNRIKEEPAKAFVPRTVMIG-GKAAPGYHMAKLIIKLITA 627 (843)
T ss_pred HHHHhCcccCcchhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhccCceEEEEc-CccCchhHHHHHHHHHHHH
Confidence 345666554443333345678888886 444443 233321 23567777 43 232 2333433332
Q ss_pred ---HhCC-------CcEEEEEecChHHHHHHHhcCCEEEECC--CCCCCchHHHHHHhcCCceEEEecCCCcccccee
Q 009217 408 ---ELKD-------GIVIFVDSYDDALLHLIFSGSDIILCHS--FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 473 (540)
Q Consensus 408 ---~~~~-------~~v~f~~~~~~~~~~~~~~~aDi~v~PS--~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~ 473 (540)
..+. =.|+|+..|.-.....++-++|+-=.=| -.|+.|..-|.-|..|+..|.|-. |+..|+-+
T Consensus 628 V~dvVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlD--GANVEm~e 703 (843)
T KOG2099|consen 628 VADVVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLD--GANVEMAE 703 (843)
T ss_pred HHHHhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEeccc--ccchHHHH
Confidence 2221 1578888886665556777777744334 379999999999999999999877 77777644
No 289
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=40.05 E-value=69 Score=34.42 Aligned_cols=142 Identities=11% Similarity=0.069 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC-CCCCc
Q 009217 367 DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLL 445 (540)
Q Consensus 367 ~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fg 445 (540)
.||-+..++++.... .++-.|.+.... ...+- .-|.=+|..+.++...+++.+-+||=-.. +|+
T Consensus 290 w~~k~~~l~~l~~~~--eih~tV~~~~~~---~~~~P--------~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~Eg-- 354 (559)
T PF15024_consen 290 WKGKEKYLDVLHKYM--EIHGTVYDEPQR---PPNVP--------SFVKNHGILSGDEFQQLLRKAKVFIGLGFPYEG-- 354 (559)
T ss_pred hcCcHHHHHHHHhhc--EEEEEeccCCCC---Ccccc--------hhhhhcCcCCHHHHHHHHHhhhEeeecCCCCCC--
Confidence 456667777775542 455555442210 01111 12223455677888899999999997655 774
Q ss_pred hHHHHHHhcCCceEEEecCC---CccccceeccC------------Cc-ccc-ceeecCCCCHHHHHHHHHHHhcCHHHH
Q 009217 446 QVPLKALKYGAAPIAVTSSD---IEFRHFAEFDH------------ES-TRF-SRFISSTFGNISLSQALEEIKNNPLSW 508 (540)
Q Consensus 446 lv~lEAma~G~pvI~~~~~~---gg~~e~v~~~~------------~~-~g~-~G~l~~~~d~~~la~ai~~l~~~~~~~ 508 (540)
-+.+||+|.|+|-|-..... ....+.+.... +. -|. --+.++-.|.+++.+||.++++++-
T Consensus 355 PaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~v-- 432 (559)
T PF15024_consen 355 PAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILATPV-- 432 (559)
T ss_pred CChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcCC--
Confidence 57899999999888765410 01111111000 00 010 1256777888899999999887642
Q ss_pred HHHHHHHHhccCChHHHHHHH
Q 009217 509 KRKIKDAMLQDFSWDADCNDI 529 (540)
Q Consensus 509 ~~~~~~a~~~~fsw~~~a~~~ 529 (540)
+ --+--.||-+.|.+++
T Consensus 433 ~----Py~P~efT~egmLeRv 449 (559)
T PF15024_consen 433 E----PYLPYEFTCEGMLERV 449 (559)
T ss_pred C----CcCCcccCHHHHHHHH
Confidence 0 1111567777777774
No 290
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=40.01 E-value=39 Score=32.34 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=25.5
Q ss_pred eEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||+.|++ ..||+|+ .+.+|+.+|+++|..|.++=
T Consensus 2 ~ii~v~s------~kGGvGKTt~a~~lA~~la~~g~~vlliD 37 (261)
T TIGR01968 2 RVIVITS------GKGGVGKTTTTANLGTALARLGKKVVLID 37 (261)
T ss_pred eEEEEec------CCCCccHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4555655 2477666 67889999999999998883
No 291
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=39.52 E-value=39 Score=31.74 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=29.1
Q ss_pred eEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEeecCC
Q 009217 58 HIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
+|+.||+ .-||+|. .+.+|+.+|+++|+.|.+|=...+
T Consensus 3 ~iIVvTS------GKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 3 RIIVVTS------GKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred eEEEEec------CCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 5777776 3477775 567899999999999999965433
No 292
>PRK09004 FMN-binding protein MioC; Provisional
Probab=39.32 E-value=57 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.2
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.+|-.+.+...|++.+.+.|++|.++.
T Consensus 11 ~tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 11 TLGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred CchHHHHHHHHHHHHHHHcCCceEEec
Confidence 479999999999999999999999864
No 293
>PRK05246 glutathione synthetase; Provisional
Probab=39.23 E-value=29 Score=34.71 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=31.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
|||+++.. |......-...+..|+++.+++||+|.+++|..
T Consensus 2 ~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~d 42 (316)
T PRK05246 2 MKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPDD 42 (316)
T ss_pred ceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehhh
Confidence 89999974 443344444666779999999999999999864
No 294
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=39.23 E-value=3e+02 Score=25.41 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=47.8
Q ss_pred cCcEEEEEecCCC--hhHHHHHHHHHHHhCCCcEEEEEe--cChHHHHHHHhcCCEEEECC--------CC-CC-CchHH
Q 009217 383 RGIQFVFTGTNKL--PSASRALVSFQEELKDGIVIFVDS--YDDALLHLIFSGSDIILCHS--------FH-DP-LLQVP 448 (540)
Q Consensus 383 ~~~~lvi~G~g~~--~~~~~~l~~l~~~~~~~~v~f~~~--~~~~~~~~~~~~aDi~v~PS--------~~-E~-fglv~ 448 (540)
.+.+++++..... ..+.+.+.+..++++.+.+.+... -+.++..+.+..||+++++- .+ |. .--.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i 107 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAI 107 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHH
Confidence 4678888875532 233444555555555333333221 13355567889999999984 12 32 33356
Q ss_pred HHHHhcCCceEEEec
Q 009217 449 LKALKYGAAPIAVTS 463 (540)
Q Consensus 449 lEAma~G~pvI~~~~ 463 (540)
.+..+.|+|++.+..
T Consensus 108 ~~~~~~G~v~~G~SA 122 (210)
T cd03129 108 LKRVARGVVIGGTSA 122 (210)
T ss_pred HHHHHcCCeEEEcCH
Confidence 788888998888765
No 295
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.13 E-value=47 Score=31.74 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=29.7
Q ss_pred HHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 44 ELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 44 ~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+.+|++..-+-.-|+++|+. ..||+| ..+++.|.++|+.|.++...
T Consensus 2 ~~~~~~~~~~~l~~k~vlItG------as~gIG---~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 2 ELDKFSMDFFSLDGKVAIVTG------GNTGLG---QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred chhhhccccccCCCCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 345666442222235555653 246666 77888899999999888653
No 296
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.07 E-value=37 Score=31.60 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=24.1
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
||.|..=..|++.|++.||||.+...+.+
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCCh
Confidence 56677778999999999999999876544
No 297
>PLN02427 UDP-apiose/xylose synthase
Probab=39.05 E-value=45 Score=34.25 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=28.6
Q ss_pred CCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEe
Q 009217 50 SGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVIL 97 (540)
Q Consensus 50 ~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~ 97 (540)
..++..+||||+. ||.|..=..|++.|.++ ||+|.++.
T Consensus 8 ~~~~~~~~~VlVT----------GgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 8 DGKPIKPLTICMI----------GAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCCcccCcEEEEE----------CCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 3445667898743 67777778899999998 59998775
No 298
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=39.01 E-value=2.2e+02 Score=26.69 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.3
Q ss_pred ccceeecCCCCHHHHHHHHHHHh
Q 009217 480 RFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 480 g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
|.-.+|+.|..-+-|.++|..+.
T Consensus 96 Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 96 GVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred CchhheecceeHHHHHHHHHHHH
Confidence 44457888888888888888774
No 299
>PRK07454 short chain dehydrogenase; Provisional
Probab=38.91 E-value=47 Score=31.28 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=24.3
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 5 ~~k~vlItG------~sg~iG---~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITG------ASSGIG---KATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 466666653 235555 7788889999999888764
No 300
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.69 E-value=53 Score=32.05 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=30.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+++|... +. ..+|--..+..|+++|.++|.++..++
T Consensus 1 M~V~i~~Dgg-~~-iGmGHV~R~l~LA~~l~k~~~~~~fl~ 39 (318)
T COG3980 1 MKVLIRCDGG-LE-IGMGHVMRTLTLARELEKRGFACLFLT 39 (318)
T ss_pred CcEEEEecCC-cc-cCcchhhhHHHHHHHHHhcCceEEEec
Confidence 8999999864 32 235566777889999999997777666
No 301
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.68 E-value=3.3e+02 Score=25.43 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChH-HHHHHHhcCCEEEECCCCCCCch
Q 009217 369 FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDA-LLHLIFSGSDIILCHSFHDPLLQ 446 (540)
Q Consensus 369 G~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~-~~~~~~~~aDi~v~PS~~E~fgl 446 (540)
..+..++.++.+.+.+++.+=++-. .+...+.++.+.++++ +-+...|.. +.+ ....+-++||+++.|...+ -
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~-~~~~~~~I~~l~~~~p-~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~---~ 99 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLR-TPAALEAIRLIAKEVP-EALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTP---P 99 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-CccHHHHHHHHHHHCC-CCEEEEeeccCHHHHHHHHHcCCCEEECCCCCH---H
Confidence 3456677777776666666666632 2445667777777775 333333433 333 3344557788888887643 1
Q ss_pred HHHHHHhcCCceE
Q 009217 447 VPLKALKYGAAPI 459 (540)
Q Consensus 447 v~lEAma~G~pvI 459 (540)
++-.|..+|.|.+
T Consensus 100 vi~~a~~~~i~~i 112 (212)
T PRK05718 100 LLKAAQEGPIPLI 112 (212)
T ss_pred HHHHHHHcCCCEe
Confidence 2333455555444
No 302
>PLN03007 UDP-glucosyltransferase family protein
Probab=38.25 E-value=52 Score=35.15 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=30.2
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+++||+++.. | . -|=-.=+.+|++.|+.+|++|+++++.
T Consensus 3 ~~~~hVvlvp~---p--a-~GHi~P~L~LAk~L~~rG~~VT~vtt~ 42 (482)
T PLN03007 3 HEKLHILFFPF---M--A-HGHMIPTLDMAKLFSSRGAKSTILTTP 42 (482)
T ss_pred CCCcEEEEECC---C--c-cccHHHHHHHHHHHHhCCCEEEEEECC
Confidence 44579998753 3 1 244456789999999999999999864
No 303
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=37.99 E-value=73 Score=26.58 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=30.5
Q ss_pred ceEEEEEeccccccccccHHHHH--hHHHHHHHHcCCeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v--~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
|||+.|+.- | .|-...|+ ..|.++.+++||++.|=+-..
T Consensus 3 mkivaVtac--p---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 3 AYLVAVTAC--V---SGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred ceEEEEeeC--C---CcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 899999873 4 47777777 668888899999999887543
No 304
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=37.84 E-value=1.2e+02 Score=30.39 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCEEEE--CCCCCCCchHH---HHHHhcCCceEEEecCCCccc
Q 009217 423 ALLHLIFSGSDIILC--HSFHDPLLQVP---LKALKYGAAPIAVTSSDIEFR 469 (540)
Q Consensus 423 ~~~~~~~~~aDi~v~--PS~~E~fglv~---lEAma~G~pvI~~~~~~gg~~ 469 (540)
+.+.++++.||++++ |..-|+-|+.- +..|.-|...|-+.- |++.
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aR--G~vV 238 (324)
T COG0111 189 DSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAAR--GGVV 238 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCC--ccee
Confidence 446688899999776 66677777664 555666663343333 5544
No 305
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=37.80 E-value=4.2e+02 Score=26.33 Aligned_cols=106 Identities=10% Similarity=0.097 Sum_probs=61.3
Q ss_pred eccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcE
Q 009217 307 APCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQ 386 (540)
Q Consensus 307 I~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~ 386 (540)
|-|+.|-..++|.-. -.+--.+++.+|-- +...|.++|-..+..=.+.++.++..+ ++.
T Consensus 120 VINa~~g~~~HPtQ~---------------LaDl~Ti~e~~g~l---~g~~va~vGD~~~~~v~~Sl~~~~a~~---g~~ 178 (301)
T TIGR00670 120 VINAGDGSNQHPTQT---------------LLDLYTIYEEFGRL---DGLKIALVGDLKYGRTVHSLAEALTRF---GVE 178 (301)
T ss_pred EEeCCCCCCCCcHHH---------------HHHHHHHHHHhCCC---CCCEEEEEccCCCCcHHHHHHHHHHHc---CCE
Confidence 568877556777510 00223356667632 235788999765444466677766654 789
Q ss_pred EEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC
Q 009217 387 FVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 387 lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
+.+++.-+- ...+++.+.+++.+ ..|.+. +...+.+++||++...++
T Consensus 179 v~~~~P~~~-~~~~~~~~~~~~~G-~~v~~~-----~d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 179 VYLISPEEL-RMPKEILEELKAKG-IKVRET-----ESLEEVIDEADVLYVTRI 225 (301)
T ss_pred EEEECCccc-cCCHHHHHHHHHcC-CEEEEE-----CCHHHHhCCCCEEEECCc
Confidence 999984321 11233434444443 355432 223467899999999876
No 306
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=37.72 E-value=38 Score=32.79 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.5
Q ss_pred ccHHHH--HhHHHHHHHHcCCeEEEE
Q 009217 73 GSLASY--VTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 73 GG~~~~--v~~L~~~L~~~Gh~V~vi 96 (540)
||+|+- +.+|+.+|+++|+.|-||
T Consensus 9 GGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 888755 578999999999999888
No 307
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=37.65 E-value=46 Score=33.12 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=25.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|||+++. .|++|.+... .|++.|++|+++...
T Consensus 2 ~m~I~IiG--------aGaiG~~~a~---~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILG--------AGSLGSLWAC---RLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEEC--------CCHHHHHHHH---HHHhCCCCeEEEEec
Confidence 48999875 4888866554 467889999999864
No 308
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.59 E-value=67 Score=29.28 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=26.0
Q ss_pred ceEEEEEeccccccccccH-HHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~-~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+||++..+ |+. ...+.++.+.|.+.|++|.|+...
T Consensus 2 k~Ill~vt--------Gsiaa~~~~~li~~L~~~g~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVS--------GSIAAYKAADLTSQLTKRGYQVTVLMTK 37 (182)
T ss_pred CEEEEEEe--------ChHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 46776654 443 445689999999999999999754
No 309
>PLN02686 cinnamoyl-CoA reductase
Probab=37.15 E-value=89 Score=31.92 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=20.6
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.+..-..|++.|.++||+|.++..
T Consensus 60 GatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 60 GGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 55566668888999999999987653
No 310
>PLN02208 glycosyltransferase family protein
Probab=36.84 E-value=59 Score=34.30 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++++||+++.. | . -|=-.=+.+|++.|+.+|++|+++++.
T Consensus 2 ~~~~hvv~~P~---p--a-qGHi~P~l~LAk~La~~G~~VT~vtt~ 41 (442)
T PLN02208 2 EPKFHAFMFPW---F--A-FGHMIPFLHLANKLAEKGHRVTFLLPK 41 (442)
T ss_pred CCCCEEEEecC---c--c-ccHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 56678988742 3 2 355566789999999999999999854
No 311
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=36.62 E-value=44 Score=32.39 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=25.1
Q ss_pred eEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||+-|+. -||+|+ .+.+||.+|+++|+.|-||=
T Consensus 3 ~iIav~~-------KGGVGKTT~~~nLA~~la~~G~kVLliD 37 (270)
T PRK13185 3 LVLAVYG-------KGGIGKSTTSSNLSAAFAKLGKKVLQIG 37 (270)
T ss_pred eEEEEEC-------CCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6666652 266665 45889999999999998883
No 312
>PRK00170 azoreductase; Reviewed
Probab=36.53 E-value=69 Score=29.34 Aligned_cols=39 Identities=15% Similarity=-0.026 Sum_probs=27.0
Q ss_pred ceEEEEEeccccccccccHH-HHHhHHHHHHHHc--CCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRK--GHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~-~~v~~L~~~L~~~--Gh~V~vi~p 98 (540)
||||+|... |. ..+|.. ..+..+.+.|.++ ||+|+++--
T Consensus 2 mkil~i~gS--pr-~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 2 SKVLVIKSS--IL-GDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CeEEEEecC--CC-CCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 899999874 53 222444 4555677778888 899998853
No 313
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=36.46 E-value=73 Score=29.56 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=33.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||+.|+.. |.. .|-....+...++++.+.|.||+++.-.
T Consensus 1 mki~~I~gs--~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~ 40 (207)
T COG0655 1 MKILGINGS--PRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLP 40 (207)
T ss_pred CeeeEEEec--CCC-CCcHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 789988874 443 6889999999999999999999999743
No 314
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=36.16 E-value=52 Score=29.20 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=19.1
Q ss_pred cHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 74 SLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 74 G~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+|.+-..+++.|.++||+|.+.-
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEE
T ss_pred chHHHHHHHHHHHHhcCCeEEeec
Confidence 456777899999999999998764
No 315
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=36.02 E-value=1.5e+02 Score=27.13 Aligned_cols=60 Identities=13% Similarity=0.157 Sum_probs=39.9
Q ss_pred eEEEEEecc-cccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEE
Q 009217 356 IVVGCIFSD-VSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFV 417 (540)
Q Consensus 356 ~lv~~vgrl-~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~ 417 (540)
.+++++|.. ....| .+.++++++.+.++++-++|-|....-.+.|+.+.+..+. ++-+|+
T Consensus 109 rivi~v~S~~~~d~~--~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~ 170 (187)
T cd01452 109 RIVAFVGSPIEEDEK--DLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLV 170 (187)
T ss_pred eEEEEEecCCcCCHH--HHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEE
Confidence 557777776 44333 5778888888889998888876533335678888887652 344444
No 316
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=36.01 E-value=75 Score=29.12 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=23.2
Q ss_pred cccHHHHHh--HHHHHHHHcCCeEEEEeecC
Q 009217 72 IGSLASYVT--GLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 72 ~GG~~~~v~--~L~~~L~~~Gh~V~vi~p~~ 100 (540)
+|+.+.+-. .+.+.|.+.|++|+++....
T Consensus 8 TGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 8 TGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred ecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 366666655 89999999999999997543
No 317
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=35.65 E-value=41 Score=33.68 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=18.5
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||.|..-..|++.|.++||+|+++.
T Consensus 7 GatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 7 GGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred CCCChHHHHHHHHHHHCCCeEEEEe
Confidence 3444444677788999999999875
No 318
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=35.65 E-value=72 Score=29.06 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.1
Q ss_pred cc-HHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 73 GS-LASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 73 GG-~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|| ......+|.+.|.+.|++|+|+...
T Consensus 8 Gsiaa~ka~~lir~L~~~g~~V~vv~T~ 35 (181)
T TIGR00421 8 GASGVIYGIRLLEVLKEAGVEVHLVISD 35 (181)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 55 4556788999999999999999854
No 319
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=35.54 E-value=3.6e+02 Score=27.31 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC---ChhHHHHHHHHHHHhCCCcEEEEE
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK---LPSASRALVSFQEELKDGIVIFVD 418 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~---~~~~~~~l~~l~~~~~~~~v~f~~ 418 (540)
.+++++|...+-+...|+++|.+.. =.+.++.++.. .++++.+++... .+...+.+++.++..+ ..+.+.
T Consensus 141 Ti~e~~g~g~~l~glkv~~vGD~~~--v~~Sl~~~~~~---~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g-~~~~~~- 213 (338)
T PRK02255 141 TMIEHLPEGKKLEDCKVVFVGDATQ--VCVSLMFIATK---MGMDFVHFGPKGYQLPEEHLAIAEENCEVSG-GSVLVT- 213 (338)
T ss_pred HHHHHhCCCCCCCCCEEEEECCCch--HHHHHHHHHHh---CCCEEEEECCCccccCHHHHHHHHHHHHhcC-CeEEEE-
Confidence 3556665211112367889997632 23444444443 489999998532 1123334444444433 345432
Q ss_pred ecChHHHHHHHhcCCEEEECCCC
Q 009217 419 SYDDALLHLIFSGSDIILCHSFH 441 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~~ 441 (540)
. ...+.+..||++...++.
T Consensus 214 ---~-d~~eav~~aDvvy~~~w~ 232 (338)
T PRK02255 214 ---D-DVDEAVKDADFVYTDVWY 232 (338)
T ss_pred ---c-CHHHHhCCCCEEEEcccH
Confidence 1 234678999999997654
No 320
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=35.53 E-value=44 Score=32.49 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=25.5
Q ss_pred ceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi 96 (540)
|||+-|+ . -||+|+. +.+|+-+|+++|..|-++
T Consensus 1 ~~~iav~-g------KGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 1 MRQIAIY-G------KGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CCEEEEE-C------CCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 5665555 2 3777765 578999999999999988
No 321
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=35.47 E-value=95 Score=31.89 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=48.2
Q ss_pred hcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 32 DILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
-+-.+.=.+++..++.++...+.. +|+++...+ .|-.+..+..+++.|.+.|.+|.++--...
T Consensus 224 ~i~~~~~~~i~~~Y~~W~~~~~~~--~V~l~Y~sm-----yg~T~~ma~aiaegl~~~gv~v~~~~~~~~ 286 (388)
T COG0426 224 PIWRGNPKEIVEAYRDWAEGQPKG--KVDLIYDSM-----YGNTEKMAQAIAEGLMKEGVDVEVINLEDA 286 (388)
T ss_pred ceeeCCHHHHHHHHHHHHccCCcc--eEEEEEecc-----cCCHHHHHHHHHHHhhhcCCceEEEEcccC
Confidence 344445567788899998654444 899887754 478899999999999999999999865443
No 322
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=35.45 E-value=56 Score=33.87 Aligned_cols=67 Identities=6% Similarity=0.108 Sum_probs=49.5
Q ss_pred hhHHHhhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHH--HcCCeEEEEee
Q 009217 25 SVADLFADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQ--RKGHLVEVILP 98 (540)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~--~~Gh~V~vi~p 98 (540)
.+|-..+-+..++-.+++..++.++....+ .||++|-.. ..|-.+.++..+++++. ..|.+|.++-.
T Consensus 218 ~i~p~HG~i~~~~~~~~~~~Y~~~~~~~~~--~kv~IvY~S-----~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~ 286 (394)
T PRK11921 218 MICPSHGVIWRDNPLQIVEKYLEWAANYQE--NQVTILYDT-----MWNSTRRMAEAIAEGIKKANKDVTVKLYNS 286 (394)
T ss_pred EEEcCCccEEeCCHHHHHHHHHHHhhcCCc--CcEEEEEEC-----CchHHHHHHHHHHHHHhhcCCCCeEEEEEC
Confidence 344455666666677888899999966443 467766553 46899999999999998 68899987753
No 323
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=35.39 E-value=1.8e+02 Score=26.12 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=23.4
Q ss_pred HHHHHhcCCEEEE--CCCCCC---CchHHHHHHhcCCceEE
Q 009217 425 LHLIFSGSDIILC--HSFHDP---LLQVPLKALKYGAAPIA 460 (540)
Q Consensus 425 ~~~~~~~aDi~v~--PS~~E~---fglv~lEAma~G~pvI~ 460 (540)
+.++++.||++++ |..-|+ ++-..+++|.-|...|-
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN 125 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN 125 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEe
Confidence 4578899999887 443444 45567888888874444
No 324
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=35.27 E-value=3.6e+02 Score=27.54 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecC-----------CChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEEC
Q 009217 370 LENLKAVVRGAKMRGIQFVFTGTN-----------KLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCH 438 (540)
Q Consensus 370 ~~~Li~A~~~l~~~~~~lvi~G~g-----------~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~P 438 (540)
-+.+++.+..+.+.+++++..|.- ...+.-..+.+.+++++. -.+...++...+..+...+|++=+|
T Consensus 131 ~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl--~~~t~v~d~~~~~~l~~~vd~lkI~ 208 (360)
T PRK12595 131 YEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGL--AVISEIVNPADVEVALDYVDVIQIG 208 (360)
T ss_pred HHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCC--CEEEeeCCHHHHHHHHHhCCeEEEC
Confidence 345777777777777788776631 111223456666777652 2234566777776676779999999
Q ss_pred CC-CCCCchHHHHHHhcCCceEEEe
Q 009217 439 SF-HDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 439 S~-~E~fglv~lEAma~G~pvI~~~ 462 (540)
|. .-.+++ +-++-..|+||+.++
T Consensus 209 s~~~~n~~L-L~~~a~~gkPVilk~ 232 (360)
T PRK12595 209 ARNMQNFEL-LKAAGRVNKPVLLKR 232 (360)
T ss_pred cccccCHHH-HHHHHccCCcEEEeC
Confidence 97 345443 233456799988885
No 325
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=35.23 E-value=46 Score=32.77 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=23.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||++|.. |.+| ..++..|++.||+|+++...
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 68877742 5555 66777788899999999863
No 326
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=35.09 E-value=42 Score=33.12 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=23.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+++.. |++| ..++..|++.||+|+++..
T Consensus 1 mkI~IiG~--------G~iG---~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVG---GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHH---HHHHHHHHHCCCceEEEec
Confidence 78887742 5555 5567778889999999986
No 327
>PRK06101 short chain dehydrogenase; Provisional
Probab=34.93 E-value=60 Score=30.62 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=23.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+.++|+. .+||+| ..+++.|.++|++|.++..
T Consensus 1 ~~~vlItG------as~giG---~~la~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITG------ATSGIG---KQLALDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEc------CCcHHH---HHHHHHHHhCCCEEEEEEC
Confidence 45556654 356776 6788889999999887754
No 328
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.92 E-value=81 Score=32.74 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.8
Q ss_pred HHhHHHHHHHHcCCeEEEEee
Q 009217 78 YVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 78 ~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.-..++++|.++|++|+++..
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~ 236 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSG 236 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCC
Confidence 347889999999999999863
No 329
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=34.65 E-value=3.2e+02 Score=26.49 Aligned_cols=121 Identities=15% Similarity=0.113 Sum_probs=64.4
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEE--EecCCC--------hhHHHHHHHHHHHhCCCcEEEEEecChHHH
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVF--TGTNKL--------PSASRALVSFQEELKDGIVIFVDSYDDALL 425 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi--~G~g~~--------~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~ 425 (540)
-.-+++|.....+-+..+.++++...+.+.-+++ ..-|+. ++......+++.+++.|-|. ..|+.+.
T Consensus 115 ~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK--~~ytg~~- 191 (265)
T COG1830 115 GATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIK--TKYTGDP- 191 (265)
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEe--ecCCCCh-
Confidence 4567888888877677777777766665555554 232321 11223334455555533332 2444322
Q ss_pred HHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCcccc-c-----------eeccC--CccccceeecCCCCH
Q 009217 426 HLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRH-F-----------AEFDH--ESTRFSRFISSTFGN 491 (540)
Q Consensus 426 ~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e-~-----------v~~~~--~~~g~~G~l~~~~d~ 491 (540)
|.|-.++ -+||+|||.+ ||... . ++.+. ...|.| +|...+|
T Consensus 192 ----------------e~F~~vv---~~~~vpVvia----GG~k~~~~~~~l~~~~~ai~aGa~G~~~GRN--ifQ~~~p 246 (265)
T COG1830 192 ----------------ESFRRVV---AACGVPVVIA----GGPKTETEREFLEMVTAAIEAGAMGVAVGRN--IFQHEDP 246 (265)
T ss_pred ----------------HHHHHHH---HhCCCCEEEe----CCCCCCChHHHHHHHHHHHHccCcchhhhhh--hhccCCh
Confidence 4444332 2678888885 55443 1 11100 012332 4567778
Q ss_pred HHHHHHHHHHhcC
Q 009217 492 ISLSQALEEIKNN 504 (540)
Q Consensus 492 ~~la~ai~~l~~~ 504 (540)
+++.+||..+.-+
T Consensus 247 ~~m~~Ai~~Ivhe 259 (265)
T COG1830 247 EAMVKAIQAIVHE 259 (265)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888877643
No 330
>PRK07308 flavodoxin; Validated
Probab=34.54 E-value=69 Score=27.73 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.9
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.+|..+.++..+++.|.+.|++|.+.-
T Consensus 11 ~tGnTe~iA~~ia~~l~~~g~~~~~~~ 37 (146)
T PRK07308 11 MTGNTEEIADIVADKLRELGHDVDVDE 37 (146)
T ss_pred CCchHHHHHHHHHHHHHhCCCceEEEe
Confidence 369999999999999999999998764
No 331
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=34.31 E-value=66 Score=33.27 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=25.3
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..+|+|+++ ||.|..=..+++.|.++||+|.++...
T Consensus 58 ~~~~kVLVt----------GatG~IG~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 58 PKDVTVLVV----------GATGYIGKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred CCCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence 445777644 444444577788899999999988754
No 332
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=34.26 E-value=47 Score=31.85 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.7
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
||.|.+-..+++.|.++||+|.+++.+..
T Consensus 7 GatG~~G~~~~~~L~~~~~~v~~~~r~~~ 35 (275)
T COG0702 7 GATGFVGGAVVRELLARGHEVRAAVRNPE 35 (275)
T ss_pred ecccchHHHHHHHHHhCCCEEEEEEeCHH
Confidence 56666668889999999999999997644
No 333
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.16 E-value=71 Score=30.24 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=26.4
Q ss_pred ceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+-|+.. -||+| +.+.+||.+|+++|+.|.+|=
T Consensus 1 m~iI~v~s~------KGGvGKTt~a~nla~~la~~g~~VlliD 37 (246)
T TIGR03371 1 MKVIAIVGV------KGGVGKTTLTANLASALKLLGEPVLAID 37 (246)
T ss_pred CcEEEEEeC------CCCccHHHHHHHHHHHHHhCCCcEEEEe
Confidence 677777652 36665 456788999999999998884
No 334
>PRK06849 hypothetical protein; Provisional
Probab=34.16 E-value=59 Score=33.52 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=26.8
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+|+||++... ......++++|.+.||+|.++...
T Consensus 3 ~~~~VLI~G~~----------~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGAR----------APAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCC----------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899976432 225688999999999999998654
No 335
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.80 E-value=1e+02 Score=32.73 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=39.2
Q ss_pred hhHHHHHHhccCC---CCCCCceEEEEEec---c-ccc--cccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 39 ADLLAELRRFGSG---SKKNGFHIIHICTE---M-DPL--VSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 39 ~~~~~~~~~~~~~---~~~~~mkIl~i~~e---~-~P~--~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
++++..+.++... ..-.++|||+-+.. + -|+ ...-..|..-..|++++..+|++|++|+
T Consensus 236 ~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 236 LEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred HHHHHHHHHHHhhccccccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 3455555555432 23578899965432 1 122 2335667788999999999999999997
No 336
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=33.62 E-value=4.3e+02 Score=27.01 Aligned_cols=113 Identities=10% Similarity=0.105 Sum_probs=66.4
Q ss_pred cHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHH--H------
Q 009217 336 KTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQ--E------ 407 (540)
Q Consensus 336 k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~--~------ 407 (540)
....+.++.+++|++..++..++...+--.+. +..|++++.... ..+++++-. |.. ...+.... .
T Consensus 163 ~~~~~~~~~~~lg~~~~~~~~~vSLF~Ye~~a--l~~ll~~~~~~~-~pv~lLvp~-Gr~---~~~v~~~l~~~~~~~g~ 235 (371)
T TIGR03837 163 DPAAQRALLRRLGVGPEPDALLVSLFCYENAA--LPALLDALAQSG-SPVHLLVPE-GRA---LAAVAAWLGDALLAAGD 235 (371)
T ss_pred CHHHHHHHHHHcCCCCCCCCeEEEEEecCChh--HHHHHHHHHhCC-CCeEEEecC-Ccc---HHHHHHHhCccccCCcc
Confidence 34456678888999633333344333333333 777888886532 466766665 431 22222211 0
Q ss_pred --HhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEE
Q 009217 408 --ELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIA 460 (540)
Q Consensus 408 --~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~ 460 (540)
+.+.-.++.+...+.+...+++-+||+=++=-. = +.+-|+-.|+|-|=
T Consensus 236 ~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRGE--D---SFVRAqWAgkPfvW 285 (371)
T TIGR03837 236 VHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRGE--D---SFVRAQWAGKPFVW 285 (371)
T ss_pred ccccCceEEEEcCCCChhhHHHHHHhChhcEeech--h---HHHHHHHcCCCcee
Confidence 111124556666788889999999999775422 2 45789999997765
No 337
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=33.57 E-value=1.6e+02 Score=25.91 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhc---CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-----ChH----HHHHHHhc--CCEEEE
Q 009217 372 NLKAVVRGAKMR---GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-----DDA----LLHLIFSG--SDIILC 437 (540)
Q Consensus 372 ~Li~A~~~l~~~---~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-----~~~----~~~~~~~~--aDi~v~ 437 (540)
.++.+..++.+. .+..+++|+.+ ...+.+++....++.++|.....- +.+ .+..+++. .|++++
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~--~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~ 96 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAE--EAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLF 96 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCC--CHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecch--hhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 466666666653 46677788322 356667666665655777655321 122 23344444 899999
Q ss_pred CCCCCCCchHHHHHHhcCCceEEE
Q 009217 438 HSFHDPLLQVPLKALKYGAAPIAV 461 (540)
Q Consensus 438 PS~~E~fglv~lEAma~G~pvI~~ 461 (540)
|+...+-.+...=|-+.|.|+|+-
T Consensus 97 ~~t~~g~~la~~lA~~L~~~~v~~ 120 (164)
T PF01012_consen 97 GSTSFGRDLAPRLAARLGAPLVTD 120 (164)
T ss_dssp ESSHHHHHHHHHHHHHHT-EEEEE
T ss_pred cCcCCCCcHHHHHHHHhCCCccce
Confidence 998766668888899999966653
No 338
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=33.50 E-value=62 Score=30.70 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=18.6
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+||+| ..+++.|.++|++|.++..
T Consensus 9 sg~iG---~~la~~l~~~G~~V~~~~r 32 (248)
T PRK10538 9 TAGFG---ECITRRFIQQGHKVIATGR 32 (248)
T ss_pred CchHH---HHHHHHHHHCCCEEEEEEC
Confidence 46666 5678889999999987764
No 339
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=33.32 E-value=60 Score=30.14 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.3
Q ss_pred HHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 76 ASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
|.+....++.|.+.|++|+|+.|..
T Consensus 19 G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 19 GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 5667888999999999999998753
No 340
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=33.18 E-value=49 Score=32.03 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=20.5
Q ss_pred ccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 73 GSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 73 GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||+|+ .+.+|+.+|+++|+.|-+|=
T Consensus 9 GGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 66665 46889999999999998884
No 341
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=32.95 E-value=76 Score=31.41 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.0
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.|..=..|++.|.++||+|.++..
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r 36 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVR 36 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEc
Confidence 56666667889999999999988764
No 342
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.82 E-value=69 Score=30.77 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=26.9
Q ss_pred CceEEEEEeccccccccccHHHH--HhHHHHHHH-HcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGSLASY--VTGLSGALQ-RKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~-~~Gh~V~vi~ 97 (540)
.|+|+-|+.. -||+|+- +.+||.+|+ .+||.|-+|=
T Consensus 1 ~~~iI~v~n~------KGGvGKTT~a~nLa~~La~~~~~kVLliD 39 (259)
T COG1192 1 MMKIIAVANQ------KGGVGKTTTAVNLAAALAKRGGKKVLLID 39 (259)
T ss_pred CCEEEEEEec------CCCccHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3788888763 4888765 456889999 5669998884
No 343
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.79 E-value=58 Score=31.67 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=25.9
Q ss_pred ceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+-|+. -||+|+- +.+|+-+|+++|..|-||=
T Consensus 1 m~~iav~~-------KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYG-------KGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CCEEEEeC-------CCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 56655542 3888765 5789999999999998883
No 344
>PRK13236 nitrogenase reductase; Reviewed
Probab=32.79 E-value=64 Score=31.90 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=27.8
Q ss_pred CCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEe
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~ 97 (540)
..||++-+.. -||+|+. +.+||-+|+++|+.|-++=
T Consensus 4 ~~~~~~~~~G-------KGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 4 ENIRQIAFYG-------KGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred cCceEEEEEC-------CCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3478887732 4777765 5789999999999999984
No 345
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=32.76 E-value=2.6e+02 Score=25.96 Aligned_cols=119 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH-hcCCEE-EECCCCCCCchHHHHHH
Q 009217 375 AVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF-SGSDII-LCHSFHDPLLQVPLKAL 452 (540)
Q Consensus 375 ~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~-~~aDi~-v~PS~~E~fglv~lEAm 452 (540)
+-+....+.+++|++.+ + ....+.+.+... +...+.|-.+.++....+ .++|.+ ++|+ +.+|+..+.++
T Consensus 74 ~~~~~a~~aGA~fivsp-~----~~~~v~~~~~~~--~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa--~~~G~~~l~~l 144 (206)
T PRK09140 74 EQVDRLADAGGRLIVTP-N----TDPEVIRRAVAL--GMVVMPGVATPTEAFAALRAGAQALKLFPA--SQLGPAGIKAL 144 (206)
T ss_pred HHHHHHHHcCCCEEECC-C----CCHHHHHHHHHC--CCcEEcccCCHHHHHHHHHcCCCEEEECCC--CCCCHHHHHHH
Q ss_pred hcCCc--eEEEecCCCcc-----ccceeccCCccccceeecCC----CCHHHHHHHHHHHhcC
Q 009217 453 KYGAA--PIAVTSSDIEF-----RHFAEFDHESTRFSRFISST----FGNISLSQALEEIKNN 504 (540)
Q Consensus 453 a~G~p--vI~~~~~~gg~-----~e~v~~~~~~~g~~G~l~~~----~d~~~la~ai~~l~~~ 504 (540)
....| +=...+ ||+ +++...+..+-+..+.++.. .+..+.++.+....+.
T Consensus 145 ~~~~~~~ipvvai--GGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~~ 205 (206)
T PRK09140 145 RAVLPPDVPVFAV--GGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYRE 205 (206)
T ss_pred HhhcCCCCeEEEE--CCCCHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHhh
No 346
>PRK08105 flavodoxin; Provisional
Probab=32.68 E-value=74 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.9
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+|-.+.+...|++.|.+.|++|.++..
T Consensus 11 ~tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 11 VYGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred CchHHHHHHHHHHHHHHhCCCceEEech
Confidence 4799999999999999999999998753
No 347
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=32.49 E-value=56 Score=31.01 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=20.3
Q ss_pred cccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 72 IGSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 72 ~GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
-||+|. .+.+||.+|+++|+.|.+|=
T Consensus 9 KGGvGKTt~a~~LA~~la~~g~~VlliD 36 (251)
T TIGR01969 9 KGGTGKTTITANLGVALAKLGKKVLALD 36 (251)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 366665 55669999999999998884
No 348
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=32.49 E-value=2.7e+02 Score=22.62 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=28.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+||+++|.- .=..+..+...-++.+++|-++++-.-.
T Consensus 2 k~IlLvC~a------GmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 2 KKILLVCAA------GMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred ceEEEEecC------CCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 689999972 1235567788888899999999988743
No 349
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=32.20 E-value=79 Score=30.38 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=23.8
Q ss_pred eEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||+.|.++ -||+|+ +..+|+-+|+++|+.|-++=
T Consensus 1 HiIvV~sg------KGGvGKSTva~~lA~aLa~~G~kVg~lD 36 (261)
T PF09140_consen 1 HIIVVGSG------KGGVGKSTVAVNLAVALARMGKKVGLLD 36 (261)
T ss_dssp EEEEEE-S------STTTTHHHHHHHHHHHHHCTT--EEEEE
T ss_pred CEEEEecC------CCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57777764 366664 56779999999999999984
No 350
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=32.17 E-value=36 Score=35.07 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.6
Q ss_pred HhHHHHHHHHcCCeEEEEeec
Q 009217 79 VTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 79 v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
...|+++|+++||+|+++++.
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~ 32 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE 32 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH
Confidence 367999999999999999974
No 351
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=32.15 E-value=90 Score=29.63 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+|+.|+.. +..|-.+.+..|++.|.++|+.|-++-+.
T Consensus 1 m~vi~ivG~-----~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-----KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-----CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 789888862 24578888999999999999999999653
No 352
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=32.14 E-value=76 Score=30.08 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=19.7
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
++|++| ..|+++|.++|++|+++..
T Consensus 24 SSG~iG---~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 24 STGQLG---KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred cchHHH---HHHHHHHHhCCCEEEEEEC
Confidence 345555 7888999999999999873
No 353
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=31.86 E-value=77 Score=32.24 Aligned_cols=58 Identities=19% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHhcCCceEEEecCCCccccceeccCCccccceeecC-CCCHHHHHHHHHHHhcCHHHHHHH
Q 009217 448 PLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISS-TFGNISLSQALEEIKNNPLSWKRK 511 (540)
Q Consensus 448 ~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~-~~d~~~la~ai~~l~~~~~~~~~~ 511 (540)
+..|+.+|+.||+--.......+++.. .+-+.++ -.++++|++-|..+.+|++.+.+.
T Consensus 247 ~~~al~~g~VPI~~G~~~~~~~~~~P~------~SfI~~~df~s~~~La~yl~~l~~n~~~Y~~y 305 (349)
T PF00852_consen 247 FWNALLAGTVPIYWGPPRPNYEEFAPP------NSFIHVDDFKSPKELADYLKYLDKNDELYNKY 305 (349)
T ss_dssp HHHHHHTTSEEEEES---TTHHHHS-G------GGSEEGGGSSSHHHHHHHHHHHHT-HHHHH--
T ss_pred HHHHHHCCeEEEEECCEecccccCCCC------CCccchhcCCCHHHHHHHHHHHhcCHHHHhhh
Confidence 358999999999952000122233321 1223333 346899999999999999887754
No 354
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.61 E-value=70 Score=32.11 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=28.6
Q ss_pred CceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||++++. -||+|+ ....++-.+++.|..|.+++.
T Consensus 1 ~~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvSt 38 (322)
T COG0003 1 MTRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVST 38 (322)
T ss_pred CcEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 378998875 499999 666777889999988877763
No 355
>PRK12827 short chain dehydrogenase; Provisional
Probab=31.47 E-value=80 Score=29.63 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=24.0
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+|+++. ..||+| ..+++.|.++|++|.++..
T Consensus 6 ~~~ilItG-------asg~iG---~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 6 SRRVLITG-------GSGGLG---RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred CCEEEEEC-------CCChHH---HHHHHHHHHCCCeEEEEcC
Confidence 46776443 247776 6788999999999988764
No 356
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=31.39 E-value=1.1e+02 Score=28.20 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=25.7
Q ss_pred ceEEEEEeccccccccccH-HHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~-~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+.|+.. |. .++. ...+....+.+.+.|++|+++-
T Consensus 1 mkIl~I~GS--pr--~~S~t~~l~~~~~~~l~~~g~ev~~id 38 (191)
T PRK10569 1 MRVITLAGS--PR--FPSRSSALLEYAREWLNGLGVEVYHWN 38 (191)
T ss_pred CEEEEEEcC--CC--CCChHHHHHHHHHHHHHhCCCEEEEEE
Confidence 899999874 42 2443 3445555567778999999885
No 357
>PRK05993 short chain dehydrogenase; Provisional
Probab=31.32 E-value=79 Score=30.61 Aligned_cols=33 Identities=21% Similarity=0.075 Sum_probs=23.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 4 ~k~vlItG------asggiG---~~la~~l~~~G~~Vi~~~r 36 (277)
T PRK05993 4 KRSILITG------CSSGIG---AYCARALQSDGWRVFATCR 36 (277)
T ss_pred CCEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEEC
Confidence 35555664 357777 5678889999999988764
No 358
>PRK08309 short chain dehydrogenase; Provisional
Probab=31.25 E-value=77 Score=28.67 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=19.0
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.+ +...+++.|.++|++|.+++.
T Consensus 7 GGtG-~gg~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 7 GGTG-MLKRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CcCH-HHHHHHHHHHHCcCEEEEEEC
Confidence 4444 345699999999999988763
No 359
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.16 E-value=6.4e+02 Score=26.47 Aligned_cols=158 Identities=11% Similarity=0.046 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCC----hhHHHHHHHHHHHhCCCcEEEEEec----ChHHHHHHHh---cCCEEEECC
Q 009217 371 ENLKAVVRGAKMRGIQFVFTGTNKL----PSASRALVSFQEELKDGIVIFVDSY----DDALLHLIFS---GSDIILCHS 439 (540)
Q Consensus 371 ~~Li~A~~~l~~~~~~lvi~G~g~~----~~~~~~l~~l~~~~~~~~v~f~~~~----~~~~~~~~~~---~aDi~v~PS 439 (540)
....+++..+.+.+..++|+-+.+. ..+.+++..+.+....+.+.|+..- +.......|. .-+-+|+.=
T Consensus 169 ~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTK 248 (429)
T TIGR01425 169 KIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITK 248 (429)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEEC
Confidence 3455666666555677777754332 2344555555544433455554321 1122223343 235566665
Q ss_pred CCC--CCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 009217 440 FHD--PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 440 ~~E--~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
.-| -.|-.+--+...|+|+....+| -.+.++-..+. .....-+..-+|..+|.+.+.+..+ .+..+++.++-+.
T Consensus 249 lD~~argG~aLs~~~~t~~PI~fig~G-e~v~Dle~f~p--~~~~~rilgmgDi~~L~ek~~~~~~-~~~~~~~~~k~~~ 324 (429)
T TIGR01425 249 LDGHAKGGGALSAVAATKSPIIFIGTG-EHIDDFEIFKT--QPFISKLLGMGDIEGLIDKVQDLKL-DDNEKALIEKLKE 324 (429)
T ss_pred ccCCCCccHHhhhHHHHCCCeEEEcCC-CChhhcCcCCh--HHHHHHHhcCCCcHHHHHHHHHhhh-HHHHHHHHHHHHh
Confidence 533 3555666677889977775541 12222211110 1111123445677777777777654 3334555555555
Q ss_pred ccCChHHHHHHHHHHH
Q 009217 518 QDFSWDADCNDIHISA 533 (540)
Q Consensus 518 ~~fsw~~~a~~~y~~l 533 (540)
..|+.+.+-.|+ ..+
T Consensus 325 ~~f~l~D~~~q~-~~i 339 (429)
T TIGR01425 325 GTFTLRDMYEQF-QNL 339 (429)
T ss_pred CCCCHHHHHHHH-HHH
Confidence 789998888774 543
No 360
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=31.14 E-value=42 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=24.1
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
.||.|..-..+++.|.++||+|++++.+.
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 36667777889999999999999999653
No 361
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=30.99 E-value=4.6e+02 Score=25.40 Aligned_cols=91 Identities=15% Similarity=0.068 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhcCcEEEEEe-----------cCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEE
Q 009217 368 VFLENLKAVVRGAKMRGIQFVFTG-----------TNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIIL 436 (540)
Q Consensus 368 KG~~~Li~A~~~l~~~~~~lvi~G-----------~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v 436 (540)
...+.+++.++.+.+...++...+ .|....--..+++.+++++. -.+...++......+...+|++-
T Consensus 36 e~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl--~~~t~~~d~~~~~~l~~~~d~lk 113 (260)
T TIGR01361 36 ESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGL--PVVTEVMDPRDVEIVAEYADILQ 113 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCC--CEEEeeCChhhHHHHHhhCCEEE
Confidence 345667777777765333333221 01111223456677777652 22345667766666667799999
Q ss_pred ECCC-CCCCchHHHHH-HhcCCceEEEe
Q 009217 437 CHSF-HDPLLQVPLKA-LKYGAAPIAVT 462 (540)
Q Consensus 437 ~PS~-~E~fglv~lEA-ma~G~pvI~~~ 462 (540)
+||. ...+. ++++ -+.|+||+.++
T Consensus 114 I~s~~~~n~~--LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 114 IGARNMQNFE--LLKEVGKQGKPVLLKR 139 (260)
T ss_pred ECcccccCHH--HHHHHhcCCCcEEEeC
Confidence 9997 34433 4444 56799999885
No 362
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=30.88 E-value=59 Score=32.73 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=24.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||.+|.. |.+| ..++..|++.||+|+++..
T Consensus 2 ~mkI~IiG~--------G~mG---~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 2 MARICVLGA--------GSIG---CYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CceEEEECC--------CHHH---HHHHHHHHhcCCcEEEEec
Confidence 378888742 4444 6677889999999999874
No 363
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.83 E-value=87 Score=29.33 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=27.1
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+-+||+... +.||+| +.|++.+.+.|+.|.-.+..
T Consensus 6 ~~k~VlItgc------s~GGIG---~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGC------SSGGIG---YALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeec------CCcchh---HHHHHHHHhCCeEEEEEccc
Confidence 3446776554 469998 78999999999999766544
No 364
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=30.75 E-value=72 Score=30.40 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=23.8
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+|+|+++.. +|++| ..+++.|.++||+|++++.
T Consensus 16 ~~~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 16 KTKTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cCCeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEec
Confidence 3567776532 35555 6677778889999988764
No 365
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=30.73 E-value=84 Score=31.59 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCCCceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
.+.+..|+-|.. ..+||.| .++..|++.|.++|+.|.|++..|+.
T Consensus 45 ~~~~~pvIsVGN-----i~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 45 YRAPVPVIVVGN-----ITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred cCCCCCEEEEcC-----eeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 344455666643 2356655 57888999999999999999999875
No 366
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=30.45 E-value=67 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=25.3
Q ss_pred ceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi 96 (540)
|+.+.|+. -||+|.. +.+||.+|+++|+.|-||
T Consensus 1 ~~~i~~~g-------KGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 1 MRKFCFYG-------KGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred CcEEEEEC-------CCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 56665653 3888765 578999999999998887
No 367
>PRK05568 flavodoxin; Provisional
Probab=30.32 E-value=1.2e+02 Score=25.88 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=28.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+++... ..|..+.++..+++.+.+.|++|+++-.
T Consensus 3 ~~~IvY~S-----~~GnT~~~a~~i~~~~~~~g~~v~~~~~ 38 (142)
T PRK05568 3 KINIIYWS-----GTGNTEAMANLIAEGAKENGAEVKLLNV 38 (142)
T ss_pred eEEEEEEC-----CCchHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 45555432 4699999999999999999999998853
No 368
>PLN03015 UDP-glucosyl transferase
Probab=30.28 E-value=6.9e+02 Score=26.59 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=26.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEeecC
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILPKY 100 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~p~~ 100 (540)
||+++. +| . -|=-.=+.+|++.|+.+ |..||+++...
T Consensus 5 Hvvl~P---~p--~-qGHi~P~l~LAk~La~~~g~~vT~v~t~~ 42 (470)
T PLN03015 5 HALLVA---SP--G-LGHLIPILELGNRLSSVLNIHVTILAVTS 42 (470)
T ss_pred EEEEEC---Cc--c-cccHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 777664 23 2 34556678999999976 99999997543
No 369
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=30.27 E-value=1.1e+02 Score=25.01 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=28.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcC---CeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG---HLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G---h~V~vi~p~ 99 (540)
|+|++|.+. .|. ..........++..+...| ++|.|+.-.
T Consensus 1 k~v~~i~~~-~p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPY--DDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 688888764 443 1234777888889999999 999999854
No 370
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=30.21 E-value=27 Score=29.82 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=23.9
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
...|||-+|.. |++-..|+++|.+.||+|.-+..
T Consensus 8 ~~~l~I~iIGa-----------GrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 8 AARLKIGIIGA-----------GRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp ----EEEEECT-----------SCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCccEEEEECC-----------CHHHHHHHHHHHHCCCeEEEEEe
Confidence 45689998854 34448899999999999987754
No 371
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=30.05 E-value=4.5e+02 Score=27.20 Aligned_cols=89 Identities=17% Similarity=0.210 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCCh--hHHHHHHHHHHHhC-CCcEEEEEecChHHH-------------HHHHhcCCEE
Q 009217 372 NLKAVVRGAKMRGIQFVFTGTNKLP--SASRALVSFQEELK-DGIVIFVDSYDDALL-------------HLIFSGSDII 435 (540)
Q Consensus 372 ~Li~A~~~l~~~~~~lvi~G~g~~~--~~~~~l~~l~~~~~-~~~v~f~~~~~~~~~-------------~~~~~~aDi~ 435 (540)
.|-+..++..+.++|.+|=|.|--| ..+..++ +.+++- .--+..+|....+.. ...+++||++
T Consensus 243 ~lgeL~~rA~e~gVQvMVEGPGHVPl~~I~~nv~-lqK~lc~~APfYvLGPLvTDiapGYDHIt~AIGgAiaa~~GAdfL 321 (420)
T PF01964_consen 243 ILGELVKRAREAGVQVMVEGPGHVPLNQIEANVK-LQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADFL 321 (420)
T ss_dssp HHHHHHHHHHHTT--EEEEE-SB--GGGHHHHHH-HHHHHTTT--EEEE--BS-SS-TT-HHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHCCCeEEeeCCCCCCHHHHHHHHH-HHHHhcCCCCcccCCccccccCCChhHHHHHHHHHHHHHcCcceE
Confidence 3444455555679999999977432 3333332 223322 123445666643211 1346778887
Q ss_pred EECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 436 LCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 436 v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
+.-.-.|=.+|.-.|-..-| ||++++
T Consensus 322 CYVTPaEHL~LP~~eDV~eG--viA~kI 347 (420)
T PF01964_consen 322 CYVTPAEHLGLPTPEDVREG--VIASKI 347 (420)
T ss_dssp E---TTTTTS---HHHHHHH--HHHHHH
T ss_pred eeccHHHHhCCCCHHHHHHH--HHHHHH
Confidence 76666677777777777776 366655
No 372
>PRK06180 short chain dehydrogenase; Provisional
Probab=29.96 E-value=86 Score=30.33 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=18.7
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 13 sggiG---~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 13 SSGFG---RALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CChHH---HHHHHHHHhCcCEEEEEeC
Confidence 46666 6677789999999988764
No 373
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=29.78 E-value=1.1e+02 Score=29.26 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=29.7
Q ss_pred CCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 51 GSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 51 ~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
.....+++||.|.+ +|....=|. .+....+.++|++|.++|...+.
T Consensus 5 ~~~~~~~~vL~v~a--HPDDe~~g~----ggtla~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 5 PPMLDPLRVLVVFA--HPDDEEIGC----GGTLAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred cccccCCcEEEEec--CCcchhhcc----HHHHHHHHHCCCeEEEEEccCCc
Confidence 34566799999987 464332222 22233458899999999865553
No 374
>PRK07109 short chain dehydrogenase; Provisional
Probab=29.72 E-value=98 Score=31.15 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=23.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 ~k~vlITG------as~gIG---~~la~~la~~G~~Vvl~~R 40 (334)
T PRK07109 8 RQVVVITG------ASAGVG---RATARAFARRGAKVVLLAR 40 (334)
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEEC
Confidence 35666664 356776 6678889999999988764
No 375
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=29.72 E-value=1e+02 Score=30.36 Aligned_cols=43 Identities=12% Similarity=-0.042 Sum_probs=30.6
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++|||+.++....|.-.. .=.....+.++|.+.||+|.++-+.
T Consensus 3 ~~~~v~~~~g~~~~~~~~--~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREV--SLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCcEEEEEeCCCCCCceE--eHHhHHHHHHHHHHCCCEEEEEecC
Confidence 346999998765554211 1124488999999999999999654
No 376
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=29.71 E-value=77 Score=33.71 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=26.0
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
..|--..+..+++.|+++||.|+++++...
T Consensus 15 ~~sH~~~~~~la~~L~~~gh~vt~~~~~~~ 44 (496)
T KOG1192|consen 15 GQSHLNPMLQLAKRLAERGHNVTVVTPSFN 44 (496)
T ss_pred cccHHHHHHHHHHHHHHcCCceEEEEeech
Confidence 367778999999999999999999997654
No 377
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=29.71 E-value=1e+02 Score=28.20 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=26.0
Q ss_pred ceEEEEEecccccccccc-HHHHHhHHHHHHHH-cCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGS-LASYVTGLSGALQR-KGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG-~~~~v~~L~~~L~~-~Gh~V~vi~p~ 99 (540)
+||++..+ || ......+|.+.|.+ .|++|+|+...
T Consensus 2 k~IllgVT--------Gsiaa~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGIS--------GASGAIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEE--------CHHHHHHHHHHHHHHHhhcCCeEEEEECH
Confidence 46775543 44 45667889999999 59999999854
No 378
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=29.63 E-value=61 Score=32.05 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||++++.+-. -.....+.+++.++||+|.++-+.
T Consensus 1 m~~~i~~~~~s--------~~s~~~~~~a~~~~g~~v~~i~~~ 35 (300)
T PRK10446 1 MKIAILSRDGT--------LYSCKRLREAAIQRGHLVEILDPL 35 (300)
T ss_pred CeEEEEecCCc--------chhHHHHHHHHHHcCCeEEEEehH
Confidence 78998886521 133478999999999999999765
No 379
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=29.50 E-value=56 Score=24.81 Aligned_cols=26 Identities=23% Similarity=0.100 Sum_probs=21.9
Q ss_pred HHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 76 ASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
|..-.++|..|++.|.+|+++.....
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CHHHHHHHHHHHHhCcEEEEEeccch
Confidence 56678999999999999999986543
No 380
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=29.43 E-value=92 Score=29.61 Aligned_cols=32 Identities=9% Similarity=0.188 Sum_probs=23.2
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 9 k~vlVtG------as~gIG---~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 9 KVVVVTG------AAQGIG---RGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 5566664 346776 6788889999999877653
No 381
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.40 E-value=67 Score=32.21 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=24.9
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|||.+|. +|.+-..++..|++.||+|+++.+.
T Consensus 4 ~m~I~iIG-----------~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLG-----------AGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEEC-----------cCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47888773 3444477788899999999998763
No 382
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.39 E-value=93 Score=31.14 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=20.4
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.|-.=..|++.|.++|++|.++..
T Consensus 16 G~~GfIG~~l~~~L~~~g~~V~~~~r 41 (338)
T PLN00198 16 GGTGFLASLLIKLLLQKGYAVNTTVR 41 (338)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEC
Confidence 55555667899999999999987764
No 383
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=29.35 E-value=65 Score=30.27 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=22.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||+++|+. ..||+| ..+++.|.++|++|.++.
T Consensus 1 ~~~~lItG------a~g~iG---~~l~~~l~~~g~~v~~~~ 32 (247)
T PRK09730 1 MAIALVTG------GSRGIG---RATALLLAQEGYTVAVNY 32 (247)
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEe
Confidence 56666653 245555 678899999999998764
No 384
>PRK06924 short chain dehydrogenase; Provisional
Probab=29.06 E-value=70 Score=30.22 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=23.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 1 ~k~vlItG------asggiG---~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 1 MRYVIITG------TSQGLG---EAIANQLLEKGTHVISISR 33 (251)
T ss_pred CcEEEEec------CCchHH---HHHHHHHHhcCCEEEEEeC
Confidence 45555553 246666 6779999999999987764
No 385
>PRK04148 hypothetical protein; Provisional
Probab=29.02 E-value=65 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+++||+-|.. | .| ..++..|++.||+|+.+=
T Consensus 16 ~~~kileIG~--------G-fG---~~vA~~L~~~G~~ViaID 46 (134)
T PRK04148 16 KNKKIVELGI--------G-FY---FKVAKKLKESGFDVIVID 46 (134)
T ss_pred cCCEEEEEEe--------c-CC---HHHHHHHHHCCCEEEEEE
Confidence 4589988864 2 11 346778889999998873
No 386
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.98 E-value=3e+02 Score=29.49 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEEeccccccccccHH-------HHHhHHHHHHHHcC-CeEEEE
Q 009217 58 HIIHICTEMDPLVSIGSLA-------SYVTGLSGALQRKG-HLVEVI 96 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~-------~~v~~L~~~L~~~G-h~V~vi 96 (540)
||++|.+.+. .||.. .-+.-|+-.|.+.| |+|.++
T Consensus 1 ~illi~P~~~----~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~ii 43 (497)
T TIGR02026 1 RILILNPNYH----AGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFL 43 (497)
T ss_pred CeEEEcCCCC----ccccccCCCcCCHHHHHHHHHHHhcCCcceEEe
Confidence 5888876432 13321 12456777788899 899988
No 387
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=28.88 E-value=71 Score=31.58 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=22.3
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+||+|-.=...+.+|.+.||+|.|+=
T Consensus 6 tGGAGYIGSHtv~~Ll~~G~~vvV~D 31 (329)
T COG1087 6 TGGAGYIGSHTVRQLLKTGHEVVVLD 31 (329)
T ss_pred ecCcchhHHHHHHHHHHCCCeEEEEe
Confidence 37888887888899999999999883
No 388
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=28.86 E-value=65 Score=31.71 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.3
Q ss_pred cHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 74 SLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 74 G~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+|.+=..+++.|.++||+|+|.-.
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r 31 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNR 31 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeC
Confidence 5666778999999999999999864
No 389
>PRK12939 short chain dehydrogenase; Provisional
Probab=28.80 E-value=1e+02 Score=28.92 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=17.9
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.||+| ..+++.|.++|++|.++.
T Consensus 16 ~g~iG---~~la~~l~~~G~~v~~~~ 38 (250)
T PRK12939 16 ARGLG---AAFAEALAEAGATVAFND 38 (250)
T ss_pred CChHH---HHHHHHHHHcCCEEEEEe
Confidence 46666 677888999999987774
No 390
>PRK07236 hypothetical protein; Provisional
Probab=28.51 E-value=71 Score=32.77 Aligned_cols=33 Identities=24% Similarity=0.043 Sum_probs=24.2
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+++++|++|.. | ..=..++..|++.|++|+|+=
T Consensus 4 ~~~~~ViIVGa---------G--~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGG---------S--LGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCeEEEECC---------C--HHHHHHHHHHHhCCCCEEEEe
Confidence 45688998853 2 223567788999999999995
No 391
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=28.50 E-value=79 Score=31.96 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=25.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
...||||+. ||.|..-..|++.|.++|++|.++..
T Consensus 8 ~~~~~vLVt----------G~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVT----------GATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred cCCCEEEEE----------CCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 346888754 44555557788999999999988753
No 392
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.45 E-value=1.1e+02 Score=32.27 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=30.9
Q ss_pred HHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 42 LAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 42 ~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+.++.+........++||+++. .|.+...+++.|.+.|++|+++...
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG-----------~G~~g~~l~~~L~~~~~~v~vid~~ 263 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVG-----------GGNIGYYLAKLLEKEGYSVKLIERD 263 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEEC-----------CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 3344444433334567888662 2556677889999999999998643
No 393
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.26 E-value=2.6e+02 Score=24.87 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhcCc--EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEEC
Q 009217 368 VFLENLKAVVRGAKMRGI--QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCH 438 (540)
Q Consensus 368 KG~~~Li~A~~~l~~~~~--~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~P 438 (540)
-.+.+.++|++.+...++ -+++-|+| ++...++++.+. + .+|...| ........+-++||-|+.=
T Consensus 89 ~Dv~laIDame~~~~~~iD~~vLvSgD~---DF~~Lv~~lre~-G-~~V~v~g-~~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 89 VDVRMAVEAMELIYNPNIDAVALVTRDA---DFLPVINKAKEN-G-KETIVIG-AEPGFSTALQNSADIAIIL 155 (160)
T ss_pred ccHHHHHHHHHHhccCCCCEEEEEeccH---hHHHHHHHHHHC-C-CEEEEEe-CCCCChHHHHHhcCeEEeC
Confidence 447789999988755433 33334443 355555555443 3 5777665 3333445678999988753
No 394
>PRK07806 short chain dehydrogenase; Provisional
Probab=28.17 E-value=1.1e+02 Score=28.82 Aligned_cols=24 Identities=17% Similarity=0.100 Sum_probs=18.6
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 15 sggiG---~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 15 SRGIG---ADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCcHH---HHHHHHHHHCCCEEEEEeC
Confidence 57887 5567789999999987653
No 395
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=28.16 E-value=1e+02 Score=28.20 Aligned_cols=27 Identities=22% Similarity=0.195 Sum_probs=19.8
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
...|..-..|++++..+|++|++|+..
T Consensus 26 ~SSG~~G~~lA~~~~~~Ga~V~li~g~ 52 (185)
T PF04127_consen 26 RSSGKMGAALAEEAARRGAEVTLIHGP 52 (185)
T ss_dssp S--SHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEecC
Confidence 445566689999999999999999854
No 396
>CHL00067 rps2 ribosomal protein S2
Probab=28.06 E-value=5.2e+02 Score=24.47 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCEEEECCC-CCCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 432 SDIILCHSF-HDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
-|++++... .|- .++.||...|.|+|+- |+ ...++.|+
T Consensus 162 P~~iiv~d~~~~~--~ai~Ea~~l~IPvIaivDT--n~~p~~id 201 (230)
T CHL00067 162 PDIVIIIDQQEEY--TALRECRKLGIPTISILDT--NCDPDLAD 201 (230)
T ss_pred CCEEEEeCCcccH--HHHHHHHHcCCCEEEEEeC--CCCccccc
Confidence 566666554 333 7889999999999984 44 44555554
No 397
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.05 E-value=2e+02 Score=25.78 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=57.0
Q ss_pred cCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEE----ecChHHH---HHHH--hcCCEEEE
Q 009217 367 DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVD----SYDDALL---HLIF--SGSDIILC 437 (540)
Q Consensus 367 ~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~----~~~~~~~---~~~~--~~aDi~v~ 437 (540)
--|.|++.+.++...+.+.++.++|+.+ .......+.+.+.++ ++.+.+ .+..++. ...+ ..+|++++
T Consensus 29 ~~g~dl~~~ll~~~~~~~~~v~llG~~~-~~~~~~~~~l~~~yp--~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 29 VTGSDLMPALLELAAQKGLRVFLLGAKP-EVLEKAAERLRARYP--GLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred cCcHHHHHHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHHHHCC--CcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 3578888888888777789999999543 334444556677776 344343 2222221 1222 45788877
Q ss_pred CC---CCCCCchHHHHHHhcCCceEEEecCCCccccce
Q 009217 438 HS---FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFA 472 (540)
Q Consensus 438 PS---~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v 472 (540)
.- ..|-|..-..+.+ ..+++.+ + ||.-|+.
T Consensus 106 glG~PkQE~~~~~~~~~l--~~~v~~~-v--G~~~d~~ 138 (171)
T cd06533 106 GLGAPKQELWIARHKDRL--PVPVAIG-V--GGSFDFL 138 (171)
T ss_pred ECCCCHHHHHHHHHHHHC--CCCEEEE-e--ceeeEec
Confidence 52 3676665555544 3333443 5 8866665
No 398
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=28.03 E-value=4.9e+02 Score=24.12 Aligned_cols=95 Identities=14% Similarity=0.004 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhcCcEEEEEecCCC--hhHHHHHHHHHHHh-CCCcEEEEEecChHHHHHHHhcCCEEEECCC----
Q 009217 368 VFLENLKAVVRGAKMRGIQFVFTGTNKL--PSASRALVSFQEEL-KDGIVIFVDSYDDALLHLIFSGSDIILCHSF---- 440 (540)
Q Consensus 368 KG~~~Li~A~~~l~~~~~~lvi~G~g~~--~~~~~~l~~l~~~~-~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~---- 440 (540)
-+.+.|.+.+..+.+.+.+++++.+... +++.+.+++.-+++ +. .+..+...+.+...+.+..||++++|--
T Consensus 15 ~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~-~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~ 93 (212)
T cd03146 15 HALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGV-EVSHLHLFDTEDPLDALLEADVIYVGGGNTFN 93 (212)
T ss_pred cchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCc-EEEEEeccCcccHHHHHhcCCEEEECCchHHH
Confidence 3455566665555445788999886643 22333344434444 42 2332222223343567789999999941
Q ss_pred ----CCCCchH--HHHHHhcCCceEEEec
Q 009217 441 ----HDPLLQV--PLKALKYGAAPIAVTS 463 (540)
Q Consensus 441 ----~E~fglv--~lEAma~G~pvI~~~~ 463 (540)
+...|+. +-++...|+|++.+..
T Consensus 94 ~~~~l~~~~l~~~l~~~~~~g~~i~G~SA 122 (212)
T cd03146 94 LLAQWREHGLDAILKAALERGVVYIGWSA 122 (212)
T ss_pred HHHHHHHcCHHHHHHHHHHCCCEEEEECH
Confidence 1222332 3345667998888765
No 399
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=28.01 E-value=1.2e+02 Score=23.38 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=26.0
Q ss_pred eEEEEEeccccccccccHHHHH-hHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSIGSLASYV-TGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v-~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||+.+|.. .. |.+..+ ..+-+.+.++|.++.+....
T Consensus 1 kIlvvC~~-----Gi-~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGS-----GI-GTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESS-----SS-HHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCC-----hH-HHHHHHHHHHHHHHHhccCceEEEEec
Confidence 78999962 11 455566 77888899999888877654
No 400
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=27.98 E-value=1e+02 Score=30.58 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=23.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 6 ~k~vlVTG------as~gIG---~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 6 KGTVIITG------ASSGVG---LYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCEEEEEc------CCChHH---HHHHHHHHHCCCEEEEEEC
Confidence 45566664 357777 6678899999999987763
No 401
>PRK05884 short chain dehydrogenase; Provisional
Probab=27.89 E-value=97 Score=28.91 Aligned_cols=32 Identities=13% Similarity=0.247 Sum_probs=23.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++.. ..||+| ..+++.|.++|++|.++..
T Consensus 1 m~vlItG-------as~giG---~~ia~~l~~~g~~v~~~~r 32 (223)
T PRK05884 1 VEVLVTG-------GDTDLG---RTIAEGFRNDGHKVTLVGA 32 (223)
T ss_pred CeEEEEe-------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 5666443 246666 6788889999999988754
No 402
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.83 E-value=1e+02 Score=32.83 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=48.8
Q ss_pred cCCCchhhhHHHHHHhhccchhHHHhhhcCCCCc---hhHHHHHHhccCC---------CCCCCceEEEEEecccccccc
Q 009217 5 GMINSGEASNLRKLVFDYKVSVADLFADILPEGD---ADLLAELRRFGSG---------SKKNGFHIIHICTEMDPLVSI 72 (540)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~~~~~mkIl~i~~e~~P~~~~ 72 (540)
+.|+-+--..||..+-.|..|..+--..|....- +..+......... +.-.+.||++..+
T Consensus 7 r~~~~~~~~~l~~~a~~~g~s~e~e~r~il~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~k~IllgVt-------- 78 (475)
T PRK13982 7 RKLDDAIKAELRQRAAQNGRSMEEEVRVILRDATTPRHGPAASSAAPVSAAAPPAAREQASLASKRVTLIIG-------- 78 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCccccCcccccCCCcccccccCCCEEEEEEc--------
Confidence 4455556677888888888887644322211100 0000000000000 0122467887654
Q ss_pred ccHHH-HHhHHHHHHHHcCCeEEEEeec
Q 009217 73 GSLAS-YVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 73 GG~~~-~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||++. .+.+|.+.|.+.|++|.|+...
T Consensus 79 GsIAayka~~lvr~L~k~G~~V~VvmT~ 106 (475)
T PRK13982 79 GGIAAYKALDLIRRLKERGAHVRCVLTK 106 (475)
T ss_pred cHHHHHHHHHHHHHHHhCcCEEEEEECc
Confidence 55554 5778999999999999999754
No 403
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=27.74 E-value=1.2e+02 Score=31.41 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=28.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+++||++..+. +.....+..|.+.|.+.|++|.|+...
T Consensus 5 ~~k~IllgvTG-------siaa~k~~~lv~~L~~~g~~V~vv~T~ 42 (399)
T PRK05579 5 AGKRIVLGVSG-------GIAAYKALELVRRLRKAGADVRVVMTE 42 (399)
T ss_pred CCCeEEEEEeC-------HHHHHHHHHHHHHHHhCCCEEEEEECH
Confidence 35688877651 233446788999999999999999754
No 404
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=27.73 E-value=1.1e+02 Score=28.62 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCceEEEEEeccccccccccHHHH-HhHHHHHHHHcCCeEEEEeecC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASY-VTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~-v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
+.+||++..+ ||++.| +.+|.+.|. +|++|.|+....
T Consensus 18 ~~k~IllgVt--------GSIAAyk~~~lvr~L~-~g~~V~VvmT~~ 55 (209)
T PLN02496 18 RKPRILLAAS--------GSVAAIKFGNLCHCFS-EWAEVRAVVTKA 55 (209)
T ss_pred CCCEEEEEEe--------CHHHHHHHHHHHHHhc-CCCeEEEEEChh
Confidence 3467877654 555544 567888887 599999997543
No 405
>PLN02240 UDP-glucose 4-epimerase
Probab=27.64 E-value=80 Score=31.73 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=17.8
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+|++| ..|++.|.++||+|+++.
T Consensus 14 tG~iG---~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 14 AGYIG---SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CChHH---HHHHHHHHHCCCEEEEEe
Confidence 35555 667888999999998875
No 406
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=27.60 E-value=2.3e+02 Score=27.32 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCcccc
Q 009217 426 HLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRH 470 (540)
Q Consensus 426 ~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e 470 (540)
..++..+|+++--|..+...-....|+..|+|+|+..+ |-..+
T Consensus 55 ~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigtt--G~s~~ 97 (257)
T PRK00048 55 EAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTT--GFTEE 97 (257)
T ss_pred HHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECC--CCCHH
Confidence 34566799999666655555567889999999998765 44433
No 407
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=27.54 E-value=1.5e+02 Score=25.64 Aligned_cols=28 Identities=29% Similarity=0.189 Sum_probs=22.0
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..|....+.+||..|+++|+.|.++-..
T Consensus 11 g~G~t~~a~~lA~~la~~~~~Vllid~~ 38 (157)
T PF13614_consen 11 GVGKTTLALNLAAALARKGKKVLLIDFD 38 (157)
T ss_dssp TSSHHHHHHHHHHHHHHTTT-EEEEE--
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 4688899999999999999998777543
No 408
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=27.36 E-value=1e+02 Score=31.63 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=22.2
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+|.+=..++++|.+.||+|+++..
T Consensus 105 GG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 105 GGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred cCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 66777778999999999999998864
No 409
>PRK05569 flavodoxin; Provisional
Probab=27.35 E-value=1.4e+02 Score=25.36 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=28.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++... | +|..+.++..+++.+.+.|++|+++-.
T Consensus 3 ki~iiY~S--~---tGnT~~iA~~i~~~~~~~g~~v~~~~~ 38 (141)
T PRK05569 3 KVSIIYWS--C---GGNVEVLANTIADGAKEAGAEVTIKHV 38 (141)
T ss_pred eEEEEEEC--C---CCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67766532 3 689999999999999999999987754
No 410
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=26.94 E-value=98 Score=28.88 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=18.7
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.||+| ..+++.|.++|++|.++...
T Consensus 14 sg~iG---~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 14 SRGIG---RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 46665 67788899999998766643
No 411
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=26.86 E-value=1.2e+02 Score=31.91 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=31.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+-|+.. +.-|-.+.+..|...|.++|+.|-+|=
T Consensus 1 MkVi~IvG~-----sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 1 MRVYGIIGW-----KDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred CcEEEEEec-----CCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 789999873 346889999999999999999999885
No 412
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=26.86 E-value=1e+02 Score=26.38 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=27.0
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
.+|-.+.++..|++.|.++|++|.++.....
T Consensus 6 ~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~ 36 (143)
T PF00258_consen 6 MTGNTEKMAEAIAEGLRERGVEVRVVDLDDF 36 (143)
T ss_dssp SSSHHHHHHHHHHHHHHHTTSEEEEEEGGGS
T ss_pred CchhHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 4699999999999999999999999986543
No 413
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=26.84 E-value=1e+02 Score=29.26 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.9
Q ss_pred ccHHHHHhHHHHHHHHc--CCeEEEEeec
Q 009217 73 GSLASYVTGLSGALQRK--GHLVEVILPK 99 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~--Gh~V~vi~p~ 99 (540)
|+....+..|.+.|.+. |++|.|+...
T Consensus 10 ~~~~~~~~~l~~~L~~~~~g~~V~vv~T~ 38 (234)
T TIGR02700 10 GHLLVESFQVMKELKREIEELRVSTFVSR 38 (234)
T ss_pred cHhHHHHHHHHHHHHhhcCCCeEEEEECh
Confidence 44557899999999999 9999999854
No 414
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=26.73 E-value=1.1e+02 Score=30.78 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=34.6
Q ss_pred CCCceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
+-+..|+-|.. ..+||.|. ++..|+++|+++|..|-|++-.|+.
T Consensus 44 ~~pvPVI~VGN-----ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 44 RAPVPVICVGN-----LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred cCCCCEEEEcc-----EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 44456766654 25677764 7899999999999999999999886
No 415
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=26.72 E-value=5.1e+02 Score=23.89 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChH-HHHHHHhcCCEEEECCCCCCCchHHH
Q 009217 372 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDA-LLHLIFSGSDIILCHSFHDPLLQVPL 449 (540)
Q Consensus 372 ~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~-~~~~~~~~aDi~v~PS~~E~fglv~l 449 (540)
..++..+.+.+.+++++=+=-. .|...+.++.+.++++ +-+.-.|.+ +.+ ....+-++|+++|.|...+. ++-
T Consensus 21 ~a~~~~~al~~gGi~~iEiT~~-t~~a~~~I~~l~~~~p-~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~---v~~ 95 (196)
T PF01081_consen 21 DAVPIAEALIEGGIRAIEITLR-TPNALEAIEALRKEFP-DLLVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPE---VIE 95 (196)
T ss_dssp GHHHHHHHHHHTT--EEEEETT-STTHHHHHHHHHHHHT-TSEEEEES--SHHHHHHHHHHT-SEEEESS--HH---HHH
T ss_pred HHHHHHHHHHHCCCCEEEEecC-CccHHHHHHHHHHHCC-CCeeEEEeccCHHHHHHHHHcCCCEEECCCCCHH---HHH
Confidence 4566666666667766555422 2445677888888886 444344444 333 33456688999999976443 444
Q ss_pred HHHhcCCceEE
Q 009217 450 KALKYGAAPIA 460 (540)
Q Consensus 450 EAma~G~pvI~ 460 (540)
.|..+|.|.+-
T Consensus 96 ~~~~~~i~~iP 106 (196)
T PF01081_consen 96 YAREYGIPYIP 106 (196)
T ss_dssp HHHHHTSEEEE
T ss_pred HHHHcCCcccC
Confidence 56677775554
No 416
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=26.70 E-value=1.1e+02 Score=30.23 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=19.8
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.|..-..|++.|.++||+|.++..
T Consensus 12 G~~G~IG~~l~~~L~~~G~~V~~~~r 37 (325)
T PLN02989 12 GASGYIASWIVKLLLFRGYTINATVR 37 (325)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEEc
Confidence 45555557888999999999987653
No 417
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.53 E-value=82 Score=31.54 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=23.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||.+|.. |.+ -..++..|++.||+|+++...
T Consensus 1 MkI~IiGa--------Ga~---G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGA--------GSF---GTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECc--------CHH---HHHHHHHHHHCCCeEEEEecC
Confidence 67776632 444 466788899999999988753
No 418
>PHA02518 ParA-like protein; Provisional
Probab=26.53 E-value=82 Score=28.92 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=21.1
Q ss_pred cccHHHH--HhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASY--VTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~--v~~L~~~L~~~Gh~V~vi~p 98 (540)
-||+|+- +.+|+.+|+++|+.|.+|=.
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~ 37 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDL 37 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3766654 57788999999999988853
No 419
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=26.52 E-value=5.9e+02 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=18.4
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||= ..-..+++.|.++|++|.+..
T Consensus 9 ggd-~r~~~~~~~l~~~G~~v~~~g 32 (296)
T PRK08306 9 GGD-ARQLELIRKLVELGAKVSLVG 32 (296)
T ss_pred cCc-HHHHHHHHHHHHCCCEEEEEe
Confidence 554 345678999999999999943
No 420
>PLN02650 dihydroflavonol-4-reductase
Probab=26.48 E-value=1.2e+02 Score=30.66 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=21.3
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.|..-..|++.|.++|++|.++..
T Consensus 12 GatGfIGs~l~~~L~~~G~~V~~~~r 37 (351)
T PLN02650 12 GASGFIGSWLVMRLLERGYTVRATVR 37 (351)
T ss_pred CCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 56666668889999999999998764
No 421
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=26.36 E-value=1.6e+02 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=23.8
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEE
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi 96 (540)
.-.+|+|+++. .|. +-..+++.|.+.|++|.+.
T Consensus 25 ~l~gk~v~I~G--------~G~---vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 25 SLEGKTVAVQG--------LGK---VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCEEEEEC--------CCH---HHHHHHHHHHHCCCEEEEE
Confidence 44567888663 244 4467889999999999855
No 422
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=26.31 E-value=1.5e+02 Score=25.09 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=27.2
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeE-EEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLV-EVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V-~vi~p 98 (540)
|++++... .|+ .+-.+.-...+++++.+.||+| .|+.-
T Consensus 1 ~~~iv~~~-~P~--~~~~~~~al~~A~aa~~~gh~v~~vFf~ 39 (127)
T TIGR03012 1 KYTLLVTG-PPY--GTQAASSAYQFAQALLAKGHEIVRVFFY 39 (127)
T ss_pred CEEEEEeC-CCC--CcHHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 35555543 565 2446778899999999999995 77764
No 423
>PRK08655 prephenate dehydrogenase; Provisional
Probab=26.31 E-value=74 Score=33.49 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=23.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||++| ||.|.+-..++++|.+.||+|+++...
T Consensus 1 MkI~II----------GG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 1 MKISII----------GGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred CEEEEE----------ecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 677766 334444577888899999999888643
No 424
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=26.21 E-value=6.8e+02 Score=26.29 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=61.0
Q ss_pred EEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCC-CCCCCceEEEEEecccccCCHHHHHHHHHHHHhc
Q 009217 305 LVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGL-SKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR 383 (540)
Q Consensus 305 ~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl-~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~ 383 (540)
..|-|+-|.+.++|.-. -.+--.+++++|- ...-+...|+++|-+...+=.+.++.++..+ .
T Consensus 205 vPVINAgdg~~~HPtQa---------------LaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~--~ 267 (429)
T PRK11891 205 LPVINGGDGPGEHPSQA---------------LLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALY--R 267 (429)
T ss_pred CCEEECCCCCCCCcHHH---------------HHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHh--c
Confidence 33568887667777510 0022235566652 1101235688999774344455556555432 3
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
++.+.+++...- ...+.+.+.+++.+ ..|.+. +...+.+..||++...+.
T Consensus 268 G~~v~l~~P~~~-~~~~~~~~~~~~~G-~~v~~~-----~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 268 GLKFTLVSPPTL-EMPAYIVEQISRNG-HVIEQT-----DDLAAGLRGADVVYATRI 317 (429)
T ss_pred CCEEEEECCCcc-ccCHHHHHHHHhcC-CeEEEE-----cCHHHHhCCCCEEEEcCc
Confidence 789999884321 12233333344433 455543 223367899999998764
No 425
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=26.20 E-value=1.2e+02 Score=27.90 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=29.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p 98 (540)
|||++|... | .|-....+..+++.+.+ .|++|.++.-
T Consensus 2 ~kilIvy~S--~---~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYS--M---YGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcC--C---CCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 689988653 3 37788899999999988 9999998864
No 426
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=26.17 E-value=1e+02 Score=31.14 Aligned_cols=26 Identities=19% Similarity=0.003 Sum_probs=22.6
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.|-.=..|++.|.++|++|+.+..
T Consensus 22 GatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 22 GVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 77888888999999999999987764
No 427
>PRK06523 short chain dehydrogenase; Provisional
Probab=26.15 E-value=1.2e+02 Score=28.75 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=19.3
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|+++|++|.++..
T Consensus 18 s~gIG---~~ia~~l~~~G~~v~~~~r 41 (260)
T PRK06523 18 TKGIG---AATVARLLEAGARVVTTAR 41 (260)
T ss_pred CCchh---HHHHHHHHHCCCEEEEEeC
Confidence 57777 6788899999999887753
No 428
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.13 E-value=1.1e+02 Score=24.92 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=24.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||.+|.. . -+.+.++..+-+.+.++|.++.|-..
T Consensus 3 kILlvCg~-----G-~STSlla~k~k~~~~e~gi~~~i~a~ 37 (104)
T PRK09590 3 KALIICAA-----G-MSSSMMAKKTTEYLKEQGKDIEVDAI 37 (104)
T ss_pred EEEEECCC-----c-hHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 69999862 1 24456666676778889999887653
No 429
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=26.11 E-value=90 Score=30.28 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=24.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc---CCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK---GHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~---Gh~V~vi~p~~~~ 102 (540)
||||+....-. ..-|+ ..|.++|.+. |++|+|++|...+
T Consensus 1 M~ILlTNDDGI---~a~Gl----~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITNDDGI---NAPGL----EVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEcCCCC---CCHhH----HHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 78997766421 12244 5566666553 4799999997654
No 430
>PRK12320 hypothetical protein; Provisional
Probab=26.02 E-value=75 Score=35.59 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.1
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.|..=..|++.|.++||+|+++..
T Consensus 7 GAaGFIGs~La~~Ll~~G~~Vi~ldr 32 (699)
T PRK12320 7 DATGAVGRSVTRQLIAAGHTVSGIAQ 32 (699)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 56666667888999999999998863
No 431
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=25.84 E-value=88 Score=27.70 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=29.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
++||++|.. +-+.++.++...+++.|.+|++++|..
T Consensus 2 gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 567887742 235789999999999999999999975
No 432
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=25.62 E-value=98 Score=29.38 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=26.3
Q ss_pred ceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+|+-+++. -||.|+- +..|+.+|+++|-.|.+|=
T Consensus 1 M~vItf~s~------KGGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 1 MPVITFASS------KGGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CCeEEEecC------CCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 667777652 3777765 5567889999999999984
No 433
>PRK09483 response regulator; Provisional
Probab=25.59 E-value=4.9e+02 Score=23.34 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=43.1
Q ss_pred cCCEEEECCC-CCCCchHHHHHHh---cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 431 GSDIILCHSF-HDPLLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 431 ~aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
..|++++-.. .+..|+..++.+. ..+|+|+... ....+..... ...|..|++..+.+.+.|.+++..+..
T Consensus 47 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~--~~~~~~~~~~-~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 47 AVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIMLTV--HTENPLPAKV-MQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEEEeC--CCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 3588887543 4566777776653 2466666533 2222222110 114677899999999999999988765
No 434
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=25.46 E-value=87 Score=31.57 Aligned_cols=23 Identities=26% Similarity=-0.061 Sum_probs=18.5
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.|++| ..+++.|.++||+|.++.
T Consensus 13 tG~IG---~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 13 TGFKG---SWLSLWLLELGAEVYGYS 35 (349)
T ss_pred CChhH---HHHHHHHHHCCCEEEEEe
Confidence 45555 778899999999998775
No 435
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.42 E-value=1.1e+02 Score=28.63 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=18.7
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+||+| ..|++.|.++||+|.+++..
T Consensus 15 sg~iG---~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 15 ARGLG---RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CchHH---HHHHHHHHHCCCeEEEEeCC
Confidence 45655 77888899999999776543
No 436
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=25.39 E-value=1e+02 Score=29.46 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=22.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+|++... .||+| ..+++.|.++|+.|.++..
T Consensus 1 m~vlItGa-------s~gIG---~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 1 MNVLVTAS-------SRGIG---FNVARELLKKGARVVISSR 32 (259)
T ss_pred CeEEEEcC-------CcHHH---HHHHHHHHHcCCEEEEEeC
Confidence 56665432 46666 6788999999999877753
No 437
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=24.86 E-value=1.4e+02 Score=27.13 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=19.6
Q ss_pred HHHHhHHHHHHHHcCCeEEEEeec
Q 009217 76 ASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..+...|.+.|.+.|++|+|+...
T Consensus 13 a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 13 AYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECh
Confidence 345578999999999999999754
No 438
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=24.63 E-value=93 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=23.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||.+|. +|.+-..++.+|.++||+|.++.+.
T Consensus 1 m~I~IIG-----------~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVG-----------LGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEe-----------ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5777663 3445578889999999999888653
No 439
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=24.58 E-value=4.7e+02 Score=23.00 Aligned_cols=76 Identities=9% Similarity=0.189 Sum_probs=42.3
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC--Ch---hHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK--LP---SASRALVSFQEELKDGIVIFVDSYDDALLHLIFS 430 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~--~~---~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 430 (540)
..++++|. ...-=.+.++.++.. -+..+.+++..+ -+ ...+..++.+.+.+ ..+.+. +...+.+.
T Consensus 3 l~i~~vGD-~~~rv~~Sl~~~~~~---~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g-~~i~~~-----~~~~e~l~ 72 (158)
T PF00185_consen 3 LKIAYVGD-GHNRVAHSLIELLAK---FGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG-GKITIT-----DDIEEALK 72 (158)
T ss_dssp EEEEEESS-TTSHHHHHHHHHHHH---TTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT-TEEEEE-----SSHHHHHT
T ss_pred CEEEEECC-CCChHHHHHHHHHHH---cCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC-CCeEEE-----eCHHHhcC
Confidence 45888995 222113344444443 378888888543 11 22333444455443 566654 22346789
Q ss_pred cCCEEEECCCC
Q 009217 431 GSDIILCHSFH 441 (540)
Q Consensus 431 ~aDi~v~PS~~ 441 (540)
.||++...++.
T Consensus 73 ~aDvvy~~~~~ 83 (158)
T PF00185_consen 73 GADVVYTDRWQ 83 (158)
T ss_dssp T-SEEEEESSS
T ss_pred CCCEEEEcCcc
Confidence 99999888764
No 440
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=24.55 E-value=1.6e+02 Score=26.20 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHhcCCEEEECCC----CCCCch--HHHHHHhcCCceEEE
Q 009217 427 LIFSGSDIILCHSF----HDPLLQ--VPLKALKYGAAPIAV 461 (540)
Q Consensus 427 ~~~~~aDi~v~PS~----~E~fgl--v~lEAma~G~pvI~~ 461 (540)
.+-..+|++|+.-. .|+-|+ .+.+|++.|.||++.
T Consensus 89 al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 89 ALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 34455899888753 355554 468899999988875
No 441
>PRK06182 short chain dehydrogenase; Validated
Probab=24.50 E-value=1.2e+02 Score=29.12 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=18.9
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++||+|.++..
T Consensus 12 sggiG---~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 12 SSGIG---KATARRLAAQGYTVYGAAR 35 (273)
T ss_pred CChHH---HHHHHHHHHCCCEEEEEeC
Confidence 57777 5578889999999987764
No 442
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=24.50 E-value=1e+02 Score=30.42 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=19.5
Q ss_pred cHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 74 SLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 74 G~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+|.+-..|++.|.+.||+|.+.-
T Consensus 7 GlG~mG~~la~~L~~~g~~V~~~d 30 (298)
T TIGR00872 7 GLGRMGANIVRRLAKRGHDCVGYD 30 (298)
T ss_pred cchHHHHHHHHHHHHCCCEEEEEE
Confidence 456667889999999999998754
No 443
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=24.41 E-value=84 Score=31.02 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=19.2
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.|..-..+++.|.++||+|.++.-
T Consensus 7 G~~G~iG~~l~~~L~~~g~~V~~~~r 32 (328)
T TIGR03466 7 GATGFVGSAVVRLLLEQGEEVRVLVR 32 (328)
T ss_pred CCccchhHHHHHHHHHCCCEEEEEEe
Confidence 33444446688899999999998874
No 444
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=24.39 E-value=71 Score=29.13 Aligned_cols=30 Identities=30% Similarity=0.191 Sum_probs=20.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||..+... -+=.-+|-.|++.||+|..+=
T Consensus 1 M~I~ViGlG-----------yvGl~~A~~lA~~G~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLG-----------YVGLPLAAALAEKGHQVIGVD 30 (185)
T ss_dssp -EEEEE--S-----------TTHHHHHHHHHHTTSEEEEE-
T ss_pred CEEEEECCC-----------cchHHHHHHHHhCCCEEEEEe
Confidence 788877543 333567888999999998774
No 445
>PRK06444 prephenate dehydrogenase; Provisional
Probab=24.37 E-value=77 Score=29.30 Aligned_cols=28 Identities=29% Similarity=0.195 Sum_probs=19.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVE 94 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~ 94 (540)
|||.+|.. .|++|. -+++.|.+.||+|+
T Consensus 1 ~~~~iiG~-------~G~mG~---~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGK-------NGRLGR---VLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEec-------CCcHHH---HHHHHHHhCCCEEE
Confidence 67887753 366664 55666788899997
No 446
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=24.16 E-value=5.8e+02 Score=23.61 Aligned_cols=70 Identities=10% Similarity=-0.077 Sum_probs=40.5
Q ss_pred CCEEE----ECCCCCCCchHHHHHHhc---CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 432 SDIIL----CHSFHDPLLQVPLKALKY---GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 432 aDi~v----~PS~~E~fglv~lEAma~---G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.|+++ .+..-+.-|+..++.+.. ++|+|+-.. -...+.+...-...|..||+..+.++++|.++|...++
T Consensus 38 pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~--~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 38 FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIAD--DDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (207)
T ss_pred CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeC--CCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHC
Confidence 36665 223334557777777643 456666532 12122121100014777899988999999999988765
No 447
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=24.12 E-value=1.6e+02 Score=27.16 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=29.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~p 98 (540)
|||++|... ..|-....+..+++.+.+. |++|+++-.
T Consensus 1 ~kilIiY~S-----~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 1 VKVLVLYYS-----MYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred CeEEEEEeC-----CCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 578888653 2588899999999999875 999988753
No 448
>PRK07102 short chain dehydrogenase; Provisional
Probab=23.99 E-value=99 Score=29.08 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=19.3
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.||+| ..+++.|.++|++|.++...
T Consensus 10 s~giG---~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 10 TSDIA---RACARRYAAAGARLYLAARD 34 (243)
T ss_pred CcHHH---HHHHHHHHhcCCEEEEEeCC
Confidence 45665 77888999999999887643
No 449
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=23.78 E-value=1.7e+02 Score=25.93 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=30.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+|+.|+.. +.-|-.+.+..|.+.|..+|+.|-++-.
T Consensus 1 m~vi~i~G~-----~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 1 MKVIGFVGY-----SGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred CeEEEEECC-----CCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 788888863 2358889999999999999999988754
No 450
>PRK09620 hypothetical protein; Provisional
Probab=23.66 E-value=1.4e+02 Score=28.31 Aligned_cols=23 Identities=17% Similarity=0.065 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHcCCeEEEEee
Q 009217 76 ASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|..=..|+++|.++|++|+++..
T Consensus 29 GfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 29 GTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeC
Confidence 45557889999999999999963
No 451
>PRK08177 short chain dehydrogenase; Provisional
Probab=23.54 E-value=1e+02 Score=28.63 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=23.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||.++|+. ..||+| ..+++.|.++|++|.++...
T Consensus 1 ~k~vlItG------~sg~iG---~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIG------ASRGLG---LGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHhCCCEEEEEeCC
Confidence 45555654 246666 56788899999999888744
No 452
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=23.50 E-value=1.6e+02 Score=32.79 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=28.4
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
.++|||+|++ +|... ...+.+....|.++||+|+|++-..+.
T Consensus 368 ~~~rvLv~sp--HPDDe----vi~~GGTlarl~~~G~~V~vv~~TsG~ 409 (652)
T PRK02122 368 YPKRVIIFSP--HPDDD----VISMGGTFRRLVEQGHDVHVAYQTSGN 409 (652)
T ss_pred CCceEEEEEe--CCCch----HhhhHHHHHHHHHCCCcEEEEEecCCc
Confidence 3589999998 47532 222334446788999999998755443
No 453
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=23.43 E-value=1.2e+02 Score=29.09 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=25.7
Q ss_pred ceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~ 97 (540)
++|..+... -||+|. .+..|+.+|+++|..|.++-
T Consensus 2 ~~i~~i~~~------KGGvGKSt~a~~la~~l~~~g~~vl~iD 38 (241)
T PRK13886 2 AKIHMVLQG------KGGVGKSFIAATIAQYKASKGQKPLCID 38 (241)
T ss_pred CeEEEEecC------CCCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 467777653 366665 45778999999999998774
No 454
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.41 E-value=1.3e+02 Score=28.60 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=22.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 7 ~~~vlItG------asg~iG---~~la~~l~~~G~~v~~~~r 39 (262)
T PRK13394 7 GKTAVVTG------AASGIG---KEIALELARAGAAVAIADL 39 (262)
T ss_pred CCEEEEEC------CCChHH---HHHHHHHHHCCCeEEEEeC
Confidence 35555653 246666 5688889999999887654
No 455
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.32 E-value=2.6e+02 Score=27.52 Aligned_cols=41 Identities=2% Similarity=0.025 Sum_probs=27.8
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHc--CCeEEEEeecCC
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK--GHLVEVILPKYA 101 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~--Gh~V~vi~p~~~ 101 (540)
...++|||+++.+ |+ |.-...|.++.... +++|.++....+
T Consensus 85 ~~~~~~ri~vl~S--------g~-gsnl~al~~~~~~~~~~~~i~~visn~~ 127 (286)
T PRK06027 85 DSAERKRVVILVS--------KE-DHCLGDLLWRWRSGELPVEIAAVISNHD 127 (286)
T ss_pred ccccCcEEEEEEc--------CC-CCCHHHHHHHHHcCCCCcEEEEEEEcCh
Confidence 4567799999875 22 56677777776663 578877765543
No 456
>PRK08267 short chain dehydrogenase; Provisional
Probab=23.13 E-value=1.1e+02 Score=29.23 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=23.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.++|+. .+||+| ..+++.|.++|++|.++..
T Consensus 1 mk~vlItG------asg~iG---~~la~~l~~~G~~V~~~~r 33 (260)
T PRK08267 1 MKSIFITG------AASGIG---RATALLFAAEGWRVGAYDI 33 (260)
T ss_pred CcEEEEeC------CCchHH---HHHHHHHHHCCCeEEEEeC
Confidence 45555553 245555 7788889999999988864
No 457
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=23.10 E-value=3.9e+02 Score=27.58 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCCC-CC
Q 009217 367 DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSFH-DP 443 (540)
Q Consensus 367 ~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~~-E~ 443 (540)
.++++.+.+..++. +.+++.+.+. .....++. .+....+.++.+ ++-+.++.+ .+|++|...-- .+
T Consensus 36 ~~n~~~l~~q~~~f---~p~~v~i~~~---~~~~~l~~---~l~~~~~~v~~G--~~~~~~l~~~~~vD~Vv~Ai~G~aG 104 (385)
T PRK05447 36 GKNVELLAEQAREF---RPKYVVVADE---EAAKELKE---ALAAAGIEVLAG--EEGLCELAALPEADVVVAAIVGAAG 104 (385)
T ss_pred CCCHHHHHHHHHHh---CCCEEEEcCH---HHHHHHHH---hhccCCceEEEC--hhHHHHHhcCCCCCEEEEeCcCccc
Confidence 34555666655443 4567777632 12233332 222112333323 333345555 35899888763 33
Q ss_pred CchHHHHHHhcCCceEEEec
Q 009217 444 LLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 444 fglv~lEAma~G~pvI~~~~ 463 (540)
. ...++|+..|+++...+-
T Consensus 105 l-~ptl~Ai~aGK~VaLANK 123 (385)
T PRK05447 105 L-LPTLAAIRAGKRIALANK 123 (385)
T ss_pred H-HHHHHHHHCCCcEEEeCH
Confidence 3 457899999997666553
No 458
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=23.02 E-value=1.6e+02 Score=30.68 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||.+|... .=|.+.| +.|.+.||||.++..
T Consensus 1 mkiaiigqs------~fg~~vy-----~~lrk~gheiv~vft 31 (881)
T KOG2452|consen 1 MKIAVIGQS------LFGQEVY-----CHLRKEGHEVVGVFT 31 (881)
T ss_pred CeeEEechh------hhhHHHH-----HHHHhcCceEEEEEE
Confidence 899988763 2355555 459999999987753
No 459
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.82 E-value=2.7e+02 Score=24.88 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+.-+|+++|.. |.-|---.-+++.|.++|++|+|+...
T Consensus 23 ~~~~~v~il~G~-------GnNGgDgl~~AR~L~~~G~~V~v~~~~ 61 (169)
T PF03853_consen 23 PKGPRVLILCGP-------GNNGGDGLVAARHLANRGYNVTVYLVG 61 (169)
T ss_dssp CTT-EEEEEE-S-------SHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCeEEEEECC-------CCChHHHHHHHHHHHHCCCeEEEEEEe
Confidence 344589999862 333344466788899999999996543
No 460
>PRK05717 oxidoreductase; Validated
Probab=22.82 E-value=1.3e+02 Score=28.44 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=22.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+++|+. ..||+| ..+++.|.++|++|.++.
T Consensus 11 k~vlItG------~sg~IG---~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 11 RVALVTG------AARGIG---LGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred CEEEEeC------CcchHH---HHHHHHHHHcCCEEEEEc
Confidence 5666653 235555 778899999999988774
No 461
>PRK06953 short chain dehydrogenase; Provisional
Probab=22.81 E-value=93 Score=28.83 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=22.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 1 ~~~vlvtG------~sg~iG---~~la~~L~~~G~~v~~~~r 33 (222)
T PRK06953 1 MKTVLIVG------ASRGIG---REFVRQYRADGWRVIATAR 33 (222)
T ss_pred CceEEEEc------CCCchh---HHHHHHHHhCCCEEEEEEC
Confidence 45555653 235555 6778888899999888754
No 462
>PRK08703 short chain dehydrogenase; Provisional
Probab=22.79 E-value=1.6e+02 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=19.1
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.||+| ..+++.|.++|++|.++...
T Consensus 15 sggiG---~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 15 SQGLG---EQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CCcHH---HHHHHHHHHcCCEEEEEeCC
Confidence 57777 55788889999998877643
No 463
>PRK13556 azoreductase; Provisional
Probab=22.63 E-value=1.7e+02 Score=27.03 Aligned_cols=40 Identities=3% Similarity=-0.007 Sum_probs=24.7
Q ss_pred ceEEEEEeccccccccccH-HHHHhHHHHHHHHc--CCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRK--GHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~-~~~v~~L~~~L~~~--Gh~V~vi~p 98 (540)
||||+|... |....++. ......+.+.+.+. ||+|+++--
T Consensus 2 ~kiL~I~~s--pr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL 44 (208)
T PRK13556 2 SKVLFVKAN--NRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDL 44 (208)
T ss_pred CeEEEEeCC--CCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999874 43111343 33445556666664 899998853
No 464
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=22.63 E-value=3.2e+02 Score=27.24 Aligned_cols=44 Identities=30% Similarity=0.178 Sum_probs=27.8
Q ss_pred HHHHHHhcCCEEEE--CCCCCC---CchHHHHHHhcCCceEEEecCCCccc
Q 009217 424 LLHLIFSGSDIILC--HSFHDP---LLQVPLKALKYGAAPIAVTSSDIEFR 469 (540)
Q Consensus 424 ~~~~~~~~aDi~v~--PS~~E~---fglv~lEAma~G~pvI~~~~~~gg~~ 469 (540)
.+.++++.||++++ |..-|+ ++--.++.|.-|...|-+.- |++.
T Consensus 189 ~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aR--G~vV 237 (311)
T PRK08410 189 SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGR--GGIV 237 (311)
T ss_pred cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCC--cccc
Confidence 35678899998776 444455 44456777877874444433 5544
No 465
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=22.58 E-value=1.2e+02 Score=30.04 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 75 LASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 75 ~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|.+=..++..|.++||+|+++-+.
T Consensus 10 ~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 10 AGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred ccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 5566688999999999999988654
No 466
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=22.53 E-value=1.7e+02 Score=28.78 Aligned_cols=25 Identities=24% Similarity=0.046 Sum_probs=16.6
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+-|..-.+|++.|. .+++|..++.
T Consensus 7 G~~GqLG~~L~~~l~-~~~~v~a~~~ 31 (281)
T COG1091 7 GANGQLGTELRRALP-GEFEVIATDR 31 (281)
T ss_pred cCCChHHHHHHHHhC-CCceEEeccC
Confidence 455566678888887 5577765543
No 467
>PLN02712 arogenate dehydrogenase
Probab=22.46 E-value=1.2e+02 Score=33.78 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=28.4
Q ss_pred CCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 50 SGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 50 ~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++...++|+|.+|. .|.+-..++++|.+.|++|.++.+.
T Consensus 46 ~~~~~~~~kIgIIG-----------~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 46 NPDNTTQLKIAIIG-----------FGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCccCCCCEEEEEc-----------cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34566779999883 2344467889999999999877653
No 468
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=22.41 E-value=8.2e+02 Score=24.73 Aligned_cols=91 Identities=16% Similarity=0.069 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEec-----------CCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEE
Q 009217 369 FLENLKAVVRGAKMRGIQFVFTGT-----------NKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILC 437 (540)
Q Consensus 369 G~~~Li~A~~~l~~~~~~lvi~G~-----------g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~ 437 (540)
.-+.+++.++.+.+.+.+++..|. |....--..+.+.+++++. -.+...++.+....+...+|++-+
T Consensus 105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl--~v~tev~d~~~~~~l~~~vd~lqI 182 (335)
T PRK08673 105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGL--PIVTEVMDPRDVELVAEYVDILQI 182 (335)
T ss_pred CHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCC--cEEEeeCCHHHHHHHHHhCCeEEE
Confidence 455788888888765555443321 1101122356666666642 223456677777666677999999
Q ss_pred CCC-CCCCchHHHHHHhcCCceEEEe
Q 009217 438 HSF-HDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 438 PS~-~E~fglv~lEAma~G~pvI~~~ 462 (540)
+|+ ...+.+ +-++-..|+||+.++
T Consensus 183 gAr~~~N~~L-L~~va~~~kPViLk~ 207 (335)
T PRK08673 183 GARNMQNFDL-LKEVGKTNKPVLLKR 207 (335)
T ss_pred CcccccCHHH-HHHHHcCCCcEEEeC
Confidence 998 577665 345567899988875
No 469
>PRK06194 hypothetical protein; Provisional
Probab=22.33 E-value=1.3e+02 Score=29.13 Aligned_cols=24 Identities=4% Similarity=-0.081 Sum_probs=18.5
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 15 sggIG---~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 15 ASGFG---LAFARIGAALGMKLVLADV 38 (287)
T ss_pred ccHHH---HHHHHHHHHCCCEEEEEeC
Confidence 46665 6788899999999977653
No 470
>PRK06753 hypothetical protein; Provisional
Probab=22.33 E-value=90 Score=31.71 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=21.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+|++|.. |++ =..+|..|+++|++|+|+=
T Consensus 1 ~~V~IvGg---------G~a--Gl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIGA---------GIG--GLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEECC---------CHH--HHHHHHHHHhCCCcEEEEe
Confidence 68887753 222 2455777999999999884
No 471
>PRK03094 hypothetical protein; Provisional
Probab=22.30 E-value=45 Score=25.78 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHcCCeEEEEe
Q 009217 75 LASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 75 ~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
++.-..++.++|.++||+|.=+-
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecC
Confidence 34446789999999999997664
No 472
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=22.28 E-value=1.3e+02 Score=27.23 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=21.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHL 92 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~ 92 (540)
|||+++.+. .+.....+.+++.+.+++
T Consensus 1 mrI~~~~Sg---------~~~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSG---------SGSFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESS---------SSHHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcC---------CCHHHHHHHHHHHhCCCC
Confidence 899999762 125677788899999997
No 473
>PRK10818 cell division inhibitor MinD; Provisional
Probab=22.16 E-value=1.8e+02 Score=28.09 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=26.4
Q ss_pred ceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+-|++. .||+| +.+.+||.+|+++|..|.++=
T Consensus 2 ~kviav~s~------KGGvGKTt~a~nlA~~la~~g~~vllvD 38 (270)
T PRK10818 2 ARIIVVTSG------KGGVGKTTSSAAIATGLAQKGKKTVVID 38 (270)
T ss_pred ceEEEEEeC------CCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 477777752 36555 567789999999999998884
No 474
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=22.11 E-value=2.4e+02 Score=26.28 Aligned_cols=72 Identities=10% Similarity=0.151 Sum_probs=37.9
Q ss_pred cccccCCHHHHHHHHHHHHhcCcEEEEEecCC--C-hhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECC
Q 009217 363 SDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK--L-PSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHS 439 (540)
Q Consensus 363 rl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~--~-~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS 439 (540)
-++|.|- +.+.+.++.+.+.+...+++|... + ....+.++.+.+.....-+.|. +-. + .+-..+|.+++||
T Consensus 4 ~iDP~k~-e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp-~~~-~---~i~~~aD~~~~~s 77 (205)
T TIGR01769 4 LIDPEKS-DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFP-GNV-N---GLSRYADAVFFMS 77 (205)
T ss_pred ccCCCcH-HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEEC-CCc-c---ccCcCCCEEEEEE
Confidence 3566775 556665556666677888887332 1 1122223443332321233332 211 1 3446699999999
Q ss_pred C
Q 009217 440 F 440 (540)
Q Consensus 440 ~ 440 (540)
.
T Consensus 78 l 78 (205)
T TIGR01769 78 L 78 (205)
T ss_pred e
Confidence 5
No 475
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=22.09 E-value=2.5e+02 Score=27.24 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=28.6
Q ss_pred hcCCEEEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 430 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 430 ~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
..+|+++--|..+..--.+..|+.+|+|+|+..+
T Consensus 67 ~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 67 TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECC
Confidence 5689999988777766778899999999998776
No 476
>PRK00211 sulfur relay protein TusC; Validated
Probab=22.06 E-value=2e+02 Score=24.05 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=28.6
Q ss_pred ceEEEEEecccccccccc-HHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 57 FHIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG-~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
|||++|... .|+ |+ .+.-..+++-+++..+++|.|+.-..+
T Consensus 2 ~ki~~i~~~-~Py---g~~~~~eaLd~ala~~a~~~~v~vff~~Dg 43 (119)
T PRK00211 2 KRIAFVFRQ-APH---GTASGREGLDALLATSAFTEDIGVFFIDDG 43 (119)
T ss_pred ceEEEEecC-CCC---CCHHHHHHHHHHHHHhcccCCeeEEEEhhh
Confidence 579988875 776 33 444455557778888899999986543
No 477
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=21.86 E-value=1.1e+02 Score=30.46 Aligned_cols=31 Identities=32% Similarity=0.391 Sum_probs=23.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||.+|.. |.+| ..++..|++.||+|+++..
T Consensus 2 mkI~iiG~--------G~mG---~~~a~~L~~~g~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGA--------GSWG---TALAIVLARNGHDVTLWAR 32 (325)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCEEEEEEC
Confidence 68887732 4444 6677888899999988865
No 478
>PRK06701 short chain dehydrogenase; Provisional
Probab=21.80 E-value=1.6e+02 Score=28.85 Aligned_cols=24 Identities=4% Similarity=0.189 Sum_probs=19.0
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 55 sggIG---~~la~~l~~~G~~V~l~~r 78 (290)
T PRK06701 55 DSGIG---RAVAVLFAKEGADIAIVYL 78 (290)
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 46666 7788999999999987754
No 479
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.80 E-value=1.7e+02 Score=30.34 Aligned_cols=37 Identities=30% Similarity=0.279 Sum_probs=27.4
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++||++..+. +.....+..+.+.|.+.|++|.|+...
T Consensus 3 ~k~IllgiTG-------Siaa~~~~~ll~~L~~~g~~V~vv~T~ 39 (390)
T TIGR00521 3 NKKILLGVTG-------GIAAYKTVELVRELVRQGAEVKVIMTE 39 (390)
T ss_pred CCEEEEEEeC-------HHHHHHHHHHHHHHHhCCCEEEEEECH
Confidence 5688877651 223356788999999999999999754
No 480
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=21.79 E-value=6.6e+02 Score=23.40 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=44.6
Q ss_pred cCcEEEEEecCCC--hhHHHHHHHHHHHhCCCcEEEEEec-----ChHHHHHHHhcCCEEEECC--------CCCCCch-
Q 009217 383 RGIQFVFTGTNKL--PSASRALVSFQEELKDGIVIFVDSY-----DDALLHLIFSGSDIILCHS--------FHDPLLQ- 446 (540)
Q Consensus 383 ~~~~lvi~G~g~~--~~~~~~l~~l~~~~~~~~v~f~~~~-----~~~~~~~~~~~aDi~v~PS--------~~E~fgl- 446 (540)
.+.+++++..... ....+++.+..++++...+.++... ++....+.+..||++++.- .+...++
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~ 107 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLL 107 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHH
Confidence 4567777654321 2233444444455544445544322 2334456778889888863 1223233
Q ss_pred -HHHHHHhcCCceEEEec
Q 009217 447 -VPLKALKYGAAPIAVTS 463 (540)
Q Consensus 447 -v~lEAma~G~pvI~~~~ 463 (540)
.+-++...|+|++.+..
T Consensus 108 ~~l~~~~~~G~v~~G~SA 125 (217)
T cd03145 108 DALRKVYRGGVVIGGTSA 125 (217)
T ss_pred HHHHHHHHcCCEEEEccH
Confidence 45667788998777765
No 481
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=21.76 E-value=2.3e+02 Score=26.91 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=37.2
Q ss_pred EEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEE
Q 009217 359 GCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK-LPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILC 437 (540)
Q Consensus 359 ~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~-~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~ 437 (540)
+++--++|.|-. .-++++.+.+.+.-.+++|... .....+-+..+.+..+..-|.| .+-... +-..||.+++
T Consensus 9 ~h~~liDPdK~~--~~~~~~~~~~~gtDai~VGGS~~~~~~d~vv~~ik~~~~lPvilf-Pg~~~~----vs~~aDail~ 81 (230)
T PF01884_consen 9 LHATLIDPDKPN--PEEALEAACESGTDAIIVGGSDTGVTLDNVVALIKRVTDLPVILF-PGSPSQ----VSPGADAILF 81 (230)
T ss_dssp -EEEEE-TTSS---HHHHHHHHHCTT-SEEEEE-STHCHHHHHHHHHHHHHSSS-EEEE-TSTCCG------TTSSEEEE
T ss_pred ceEEEECCCCCC--cHHHHHHHHhcCCCEEEECCCCCccchHHHHHHHHhcCCCCEEEe-CCChhh----cCcCCCEEEE
Confidence 355667888863 3455556655677778888333 2222333333333332234444 222222 3467999999
Q ss_pred CCC
Q 009217 438 HSF 440 (540)
Q Consensus 438 PS~ 440 (540)
||.
T Consensus 82 ~sv 84 (230)
T PF01884_consen 82 PSV 84 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 482
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=21.76 E-value=1.8e+02 Score=31.06 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=70.5
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCCh---hHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhc
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLP---SASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG 431 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~---~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~ 431 (540)
..+++..|.+...- .+.+.+.+..+.+.+..|+++-..+.. .....-..+.++....++++.+..+... +++.
T Consensus 284 svVyvsfGS~~~~~-~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~---vL~h 359 (477)
T PLN02863 284 KVVYVCFGSQVVLT-KEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVA---ILSH 359 (477)
T ss_pred ceEEEEeeceecCC-HHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHH---HhcC
Confidence 34566667764322 234444444444557777765422110 0000011122222224566556666543 4554
Q ss_pred --CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec-----cCCccccceeecC-----CCCHHHHHHHHH
Q 009217 432 --SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF-----DHESTRFSRFISS-----TFGNISLSQALE 499 (540)
Q Consensus 432 --aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~-----~~~~~g~~G~l~~-----~~d~~~la~ai~ 499 (540)
+++||.-.-+ .+.+||+++|+|.|+-.. ..|.... +.-+.| ..+. ..+.+++++++.
T Consensus 360 ~~v~~fvtH~G~----nS~~Eal~~GvP~l~~P~----~~DQ~~na~~v~~~~gvG---~~~~~~~~~~~~~~~v~~~v~ 428 (477)
T PLN02863 360 RAVGAFLTHCGW----NSVLEGLVAGVPMLAWPM----AADQFVNASLLVDELKVA---VRVCEGADTVPDSDELARVFM 428 (477)
T ss_pred CCcCeEEecCCc----hHHHHHHHcCCCEEeCCc----cccchhhHHHHHHhhcee---EEeccCCCCCcCHHHHHHHHH
Confidence 6777754322 478999999999999654 2232211 001222 3331 125678999998
Q ss_pred HHh-cCHHHH
Q 009217 500 EIK-NNPLSW 508 (540)
Q Consensus 500 ~l~-~~~~~~ 508 (540)
+++ ++++.+
T Consensus 429 ~~m~~~~~~r 438 (477)
T PLN02863 429 ESVSENQVER 438 (477)
T ss_pred HHhhccHHHH
Confidence 877 454443
No 483
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.73 E-value=6.5e+02 Score=23.32 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChHHH-HHHHhcCCEEEECCCC
Q 009217 370 LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALL-HLIFSGSDIILCHSFH 441 (540)
Q Consensus 370 ~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~~~-~~~~~~aDi~v~PS~~ 441 (540)
.+..++.++.+.+.+++.+=+--. .|...+.++++.++++ +-+.-.|.+ +.++. ..+-++|+++|.|...
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~-tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~ 86 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLR-TPAALDAIRAVAAEVE-EAIVGAGTILNAKQFEDAAKAGSRFIVSPGTT 86 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCC-CccHHHHHHHHHHHCC-CCEEeeEeCcCHHHHHHHHHcCCCEEECCCCC
Confidence 445566666666555544433311 2334556666666664 222223333 32222 3445667777777643
No 484
>PRK05876 short chain dehydrogenase; Provisional
Probab=21.72 E-value=1.6e+02 Score=28.55 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=23.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.|.++|+. ..||+| ..+++.|+++|++|.++.
T Consensus 6 ~k~vlVTG------as~gIG---~ala~~La~~G~~Vv~~~ 37 (275)
T PRK05876 6 GRGAVITG------GASGIG---LATGTEFARRGARVVLGD 37 (275)
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEe
Confidence 35666764 356776 668899999999987664
No 485
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=21.68 E-value=1.3e+02 Score=27.50 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=27.5
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|+||+|-.+ -.++++|++.+.+.|++|+|+-..
T Consensus 1 ~~~IL~IDNy----------DSFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 1 MMMILLIDNY----------DSFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred CceEEEEECc----------cchHHHHHHHHHHcCCceEEEECC
Confidence 3789988542 367999999999999999998743
No 486
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=21.62 E-value=6.6e+02 Score=23.38 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=40.8
Q ss_pred cCCEEEECCC-CCCCchHHHHHHh---cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 431 GSDIILCHSF-HDPLLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 431 ~aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
..|++++--. .+.-|+..++.+. .+.|+|+... ....+.+... -..|..||+..|.+.+.|.++|..+
T Consensus 49 ~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI~ls~--~~~~~~~~~a-l~~Ga~~yl~Kp~~~~~l~~~i~~~ 120 (239)
T PRK10430 49 PIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIVISS--AADAATIKDS-LHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred CCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEEEEEC--CCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 3688887543 3445666666654 3566666532 2222222111 1146778999999999999988753
No 487
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=21.61 E-value=2.2e+02 Score=23.66 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=29.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
-.|++|+. |..-..+.+.++.|.++|.++.|+.+.
T Consensus 10 ~di~iia~--------G~~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 10 ADITIIAY--------GSMVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSEEEEEE--------TTHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEee--------hHHHHHHHHHHHHHHHcCCceeEEeeE
Confidence 36777764 788889999999999999999999764
No 488
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=21.60 E-value=90 Score=29.52 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.2
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
++||+| ..++++|.++|++|+++.
T Consensus 23 SSGgIG---~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 23 STGHLG---KIITETFLSAGHEVTLVT 46 (227)
T ss_pred cccHHH---HHHHHHHHHCCCEEEEEc
Confidence 568888 677899999999998875
No 489
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.58 E-value=5.4e+02 Score=24.63 Aligned_cols=98 Identities=8% Similarity=-0.008 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEE-EE-EecChHHHH---HH--HhcCCEEEEC---
Q 009217 369 FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVI-FV-DSYDDALLH---LI--FSGSDIILCH--- 438 (540)
Q Consensus 369 G~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~-f~-~~~~~~~~~---~~--~~~aDi~v~P--- 438 (540)
|.|++.+.++...+.+.++.++|..+ ...++..+.+.++++ -+|. .. |.++.++.. +. -+.+|++++-
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~~-~v~~~a~~~l~~~y~-l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGKP-EVLAQTEAKLRTQWN-VNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCCH-HHHHHHHHHHHHHhC-CEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 78888888877666678999999442 334444555566663 2332 22 334332211 22 2567888874
Q ss_pred CCCCCCchHHHHHHhcCCceEEEecCCCcccccee
Q 009217 439 SFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 473 (540)
Q Consensus 439 S~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~ 473 (540)
...|-|..-..+-+ +.+++. .+ ||.-|+..
T Consensus 168 PkQE~~~~~~~~~~--~~~v~~-gv--Gg~fD~~a 197 (243)
T PRK03692 168 PKQEIFMRDCRLVY--PDALYM-GV--GGTYDVFT 197 (243)
T ss_pred cHHHHHHHHHHHhC--CCCEEE-Ee--CeEEEEec
Confidence 24566643332222 343433 35 88777653
No 490
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.56 E-value=1e+02 Score=29.21 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+.++||++.. .||+| ..+++.|.++||+|.++.-
T Consensus 10 ~~~~vlItGa-------~g~iG---~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 10 DGLRVLVTGG-------ASGIG---RAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCCEEEEeCC-------CCcHH---HHHHHHHHHCCCEEEEEeC
Confidence 4467775432 36665 6778889999999877663
No 491
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=21.45 E-value=3.2e+02 Score=26.19 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=26.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
-+|+++|.. -..||=|.+ +++.|..+|++|+|+.+
T Consensus 61 ~~V~VlcG~----GNNGGDGlv---~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGP----GNNGGDGLV---AARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECC----CCCchhHHH---HHHHHHHCCCeEEEEEc
Confidence 479998863 256887755 45778999999999984
No 492
>PRK06932 glycerate dehydrogenase; Provisional
Probab=21.38 E-value=2.8e+02 Score=27.64 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=28.8
Q ss_pred HHHHHhcCCEEEE--CCCCCC---CchHHHHHHhcCCceEEEecCCCcccc
Q 009217 425 LHLIFSGSDIILC--HSFHDP---LLQVPLKALKYGAAPIAVTSSDIEFRH 470 (540)
Q Consensus 425 ~~~~~~~aDi~v~--PS~~E~---fglv~lEAma~G~pvI~~~~~~gg~~e 470 (540)
+.++++.||++++ |...|+ ++-..++.|.-|...|-+.- |++.|
T Consensus 191 l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aR--G~~Vd 239 (314)
T PRK06932 191 FEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGR--GPLVD 239 (314)
T ss_pred HHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCC--ccccC
Confidence 5688999999886 444555 44456778888875555444 55443
No 493
>PRK08265 short chain dehydrogenase; Provisional
Probab=21.38 E-value=1.7e+02 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=22.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 7 k~vlItG------as~gIG---~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTG------GATLIG---AAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555653 246666 7788999999999877753
No 494
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=21.38 E-value=1.6e+02 Score=28.80 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+.|+.. +.-|=.+.+..|+..|.++| .|-+|=
T Consensus 1 M~~i~i~G~-----~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 1 MKVLSIVGY-----KATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred CcEEEEECC-----CCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 788888863 34678899999999999999 676663
No 495
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=20.96 E-value=1.2e+02 Score=30.03 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.7
Q ss_pred cHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 74 SLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 74 G~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+|.+-..+++.|.+.||+|+|.-
T Consensus 7 GlG~MG~~ma~~L~~~G~~v~v~~ 30 (292)
T PRK15059 7 GLGIMGTPMAINLARAGHQLHVTT 30 (292)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEe
Confidence 456667889999999999998764
No 496
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=20.95 E-value=3.1e+02 Score=28.02 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=33.7
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+....|+|+.|+.. | .-|-.+.+..|.+.|.++|+.|-+|--
T Consensus 200 ~~~~~~~~~~~~g~--~---~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 200 TTTGAPPLLGVVGY--S---GTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred ccCCCccEEEEecC--C---CCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 34456889998862 3 357889999999999999999998863
No 497
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.87 E-value=4.1e+02 Score=21.47 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCCCCCCchHHHHHHhcCCceEEE
Q 009217 400 RALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSFHDPLLQVPLKALKYGAAPIAV 461 (540)
Q Consensus 400 ~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~~E~fglv~lEAma~G~pvI~~ 461 (540)
+..++.+++++. . .+++ ..++++ ..|+.++.+..+.-.-...+++..|+++++-
T Consensus 37 ~~~~~~~~~~~~-~-----~~~~--~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 37 ERAEAFAEKYGI-P-----VYTD--LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp HHHHHHHHHTTS-E-----EESS--HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcc-c-----chhH--HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEE
Confidence 345555676652 2 2232 224455 6899999887766677789999999966654
No 498
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=20.82 E-value=1.5e+02 Score=28.08 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=37.1
Q ss_pred ecccccCC-HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHH---HHHhCCCcEEEEEecChHHHHHHHhcCCEEEE
Q 009217 362 FSDVSDVF-LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSF---QEELKDGIVIFVDSYDDALLHLIFSGSDIILC 437 (540)
Q Consensus 362 grl~~~KG-~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l---~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~ 437 (540)
.-++|.|- .+...+.++.+.+.+.-.+++| |.+..-.+.+.++ .+++...-|.|.+. . ..+-..+|.+++
T Consensus 4 ~liDPdK~~~~~~~~~~~~~~~~gtdai~vG-GS~~vt~~~~~~~v~~ik~~~lPvilfp~~-~----~~i~~~aDa~l~ 77 (223)
T TIGR01768 4 TLIDPDKTNPSEADEIAKAAAESGTDAILIG-GSQGVTYEKTDTLIEALRRYGLPIILFPSN-P----TNVSRDADALFF 77 (223)
T ss_pred eeECCCCCCccccHHHHHHHHhcCCCEEEEc-CCCcccHHHHHHHHHHHhccCCCEEEeCCC-c----cccCcCCCEEEE
Confidence 34566662 2234455566666677778888 4331112233322 23333233333211 1 134466999999
Q ss_pred CCC
Q 009217 438 HSF 440 (540)
Q Consensus 438 PS~ 440 (540)
||.
T Consensus 78 ~sv 80 (223)
T TIGR01768 78 PSV 80 (223)
T ss_pred EEe
Confidence 995
No 499
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.80 E-value=1.3e+02 Score=28.35 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=22.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 3 k~vlItG------~sg~iG---~~la~~L~~~g~~vi~~~r 34 (256)
T PRK12745 3 PVALVTG------GRRGIG---LGIARALAAAGFDLAINDR 34 (256)
T ss_pred cEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEec
Confidence 5565653 235555 7788889999999987763
No 500
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.79 E-value=2.1e+02 Score=29.75 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=31.1
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
+|+++|. |. ..||.+.+ .+|.|+..||.+.|+.|+.+.
T Consensus 268 ~V~Ilcg---pg-nnggdg~v---~gRHL~~~G~~~vi~~pk~s~ 305 (453)
T KOG2585|consen 268 LVAILCG---PG-NNGGDGLV---CGRHLAQHGYTPVIYYPKRSL 305 (453)
T ss_pred eEEEEeC---CC-CccchhHH---HHHHHHHcCceeEEEeecCcc
Confidence 5999986 43 45888777 889999999999999998653
Done!