Query 009217
Match_columns 540
No_of_seqs 286 out of 2458
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 21:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vue_A GBSS-I, granule-bound s 100.0 1.6E-75 5.6E-80 625.9 42.6 470 52-537 5-511 (536)
2 1rzu_A Glycogen synthase 1; gl 100.0 3.9E-56 1.3E-60 473.6 41.8 461 57-539 1-477 (485)
3 2qzs_A Glycogen synthase; glyc 100.0 6.5E-56 2.2E-60 471.8 41.9 459 57-538 1-477 (485)
4 3fro_A GLGA glycogen synthase; 100.0 5.1E-52 1.8E-56 434.8 42.4 418 55-538 1-431 (439)
5 2r60_A Glycosyl transferase, g 100.0 2.8E-46 9.6E-51 399.1 34.8 416 55-538 6-460 (499)
6 3c48_A Predicted glycosyltrans 100.0 2.8E-45 9.6E-50 384.4 37.0 397 52-538 16-426 (438)
7 3s28_A Sucrose synthase 1; gly 100.0 6.5E-47 2.2E-51 417.3 25.4 451 29-537 255-769 (816)
8 3okp_A GDP-mannose-dependent a 100.0 3E-43 1E-47 363.2 31.7 365 54-538 2-380 (394)
9 2jjm_A Glycosyl transferase, g 100.0 4.3E-42 1.5E-46 355.4 32.7 360 66-538 22-386 (394)
10 2x6q_A Trehalose-synthase TRET 100.0 6.1E-42 2.1E-46 356.8 32.0 364 55-538 39-415 (416)
11 3nb0_A Glycogen [starch] synth 100.0 2.9E-43 9.8E-48 371.2 20.9 436 62-538 33-634 (725)
12 2iw1_A Lipopolysaccharide core 100.0 2.4E-42 8.3E-47 354.0 19.0 363 57-538 1-372 (374)
13 3oy2_A Glycosyltransferase B73 100.0 3.7E-40 1.3E-44 342.9 33.2 362 57-539 1-392 (413)
14 2iuy_A Avigt4, glycosyltransfe 100.0 1.1E-40 3.7E-45 338.1 25.5 314 56-539 3-337 (342)
15 2gek_A Phosphatidylinositol ma 100.0 4.2E-40 1.4E-44 341.1 26.8 361 54-538 18-384 (406)
16 2x0d_A WSAF; GT4 family, trans 100.0 6.5E-37 2.2E-41 317.9 17.3 359 52-538 42-410 (413)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 7.3E-34 2.5E-38 290.2 24.5 340 55-537 5-357 (364)
18 2hy7_A Glucuronosyltransferase 100.0 1.2E-34 4.1E-39 300.7 17.1 356 54-538 12-380 (406)
19 2c4m_A Glycogen phosphorylase; 100.0 2.6E-32 9E-37 292.4 32.2 447 71-538 112-720 (796)
20 1l5w_A Maltodextrin phosphoryl 100.0 3.6E-32 1.2E-36 291.3 28.0 351 169-538 273-731 (796)
21 1uqt_A Alpha, alpha-trehalose- 100.0 2E-31 6.9E-36 280.3 25.9 313 171-537 109-454 (482)
22 2vsy_A XCC0866; transferase, g 100.0 3.9E-31 1.3E-35 286.5 27.6 331 53-538 202-560 (568)
23 3beo_A UDP-N-acetylglucosamine 100.0 1.2E-30 4.2E-35 267.2 22.0 280 174-535 86-374 (375)
24 1vgv_A UDP-N-acetylglucosamine 100.0 1E-30 3.4E-35 268.9 20.7 293 173-538 76-377 (384)
25 2gj4_A Glycogen phosphorylase, 100.0 1.1E-29 3.8E-34 273.1 16.3 339 185-538 320-755 (824)
26 2bfw_A GLGA glycogen synthase; 100.0 9.7E-28 3.3E-32 223.5 19.9 185 306-517 1-194 (200)
27 3t5t_A Putative glycosyltransf 99.9 4.6E-26 1.6E-30 236.9 26.6 291 185-535 149-471 (496)
28 3qhp_A Type 1 capsular polysac 99.9 2E-26 6.8E-31 208.0 16.5 160 355-528 2-166 (166)
29 1v4v_A UDP-N-acetylglucosamine 99.9 5.9E-26 2E-30 232.7 21.5 217 267-538 144-365 (376)
30 2f9f_A First mannosyl transfer 99.9 1.7E-23 5.9E-28 191.1 14.5 149 354-515 22-174 (177)
31 2xci_A KDO-transferase, 3-deox 99.9 1.1E-22 3.9E-27 208.2 21.3 200 262-517 146-358 (374)
32 3otg_A CALG1; calicheamicin, T 99.8 4.8E-20 1.6E-24 191.0 22.4 159 355-536 243-409 (412)
33 3dzc_A UDP-N-acetylglucosamine 99.8 1.3E-19 4.3E-24 186.8 22.8 282 173-529 101-390 (396)
34 3ot5_A UDP-N-acetylglucosamine 99.8 4.6E-19 1.6E-23 182.9 22.7 212 268-529 168-384 (403)
35 3rhz_A GTF3, nucleotide sugar 99.8 3.9E-18 1.3E-22 171.0 18.0 252 184-536 73-336 (339)
36 3s2u_A UDP-N-acetylglucosamine 99.8 1.2E-16 4.2E-21 162.7 28.2 161 356-534 182-355 (365)
37 2iyf_A OLED, oleandomycin glyc 99.8 6.3E-17 2.1E-21 168.6 23.9 159 354-536 232-400 (430)
38 4fzr_A SSFS6; structural genom 99.8 3E-18 1E-22 176.7 13.4 155 355-529 228-395 (398)
39 3ia7_A CALG4; glycosysltransfe 99.7 6.3E-15 2.2E-19 151.7 27.1 160 355-536 232-399 (402)
40 3tsa_A SPNG, NDP-rhamnosyltran 99.7 9E-16 3.1E-20 157.7 18.4 159 355-534 219-387 (391)
41 3oti_A CALG3; calicheamicin, T 99.7 2.5E-15 8.5E-20 154.9 21.3 153 355-534 233-396 (398)
42 3rsc_A CALG2; TDP, enediyne, s 99.6 7E-14 2.4E-18 144.7 26.5 160 355-536 248-414 (415)
43 2p6p_A Glycosyl transferase; X 99.6 8E-13 2.7E-17 135.3 26.6 148 355-528 211-373 (384)
44 4hwg_A UDP-N-acetylglucosamine 99.5 6.7E-14 2.3E-18 143.0 14.7 201 268-513 145-351 (385)
45 2iya_A OLEI, oleandomycin glyc 99.3 6.5E-10 2.2E-14 115.2 28.8 156 355-534 256-420 (424)
46 3h4t_A Glycosyltransferase GTF 99.3 1.4E-10 4.9E-15 119.4 22.3 153 355-535 222-382 (404)
47 3q3e_A HMW1C-like glycosyltran 99.2 8.7E-11 3E-15 124.1 14.4 181 346-537 432-623 (631)
48 1iir_A Glycosyltransferase GTF 99.1 1.1E-08 3.8E-13 105.5 22.1 134 355-516 239-380 (415)
49 4amg_A Snogd; transferase, pol 99.1 3.6E-09 1.2E-13 108.4 18.1 150 355-528 238-394 (400)
50 1rrv_A Glycosyltransferase GTF 99.0 4.6E-08 1.6E-12 100.9 24.4 134 355-516 238-381 (416)
51 2o6l_A UDP-glucuronosyltransfe 99.0 2.2E-09 7.4E-14 96.4 9.7 131 355-513 22-163 (170)
52 1ygp_A Yeast glycogen phosphor 98.9 2.6E-08 8.9E-13 107.1 18.3 210 258-473 466-749 (879)
53 2yjn_A ERYCIII, glycosyltransf 98.7 4.4E-08 1.5E-12 102.0 10.3 155 355-535 268-435 (441)
54 4gyw_A UDP-N-acetylglucosamine 98.3 2.1E-05 7.2E-10 86.6 19.5 182 344-537 514-705 (723)
55 1psw_A ADP-heptose LPS heptosy 96.8 0.0058 2E-07 60.7 11.0 115 339-462 166-287 (348)
56 3hbm_A UDP-sugar hydrolase; PS 96.1 0.046 1.6E-06 52.5 11.8 94 356-463 159-252 (282)
57 3tov_A Glycosyl transferase fa 95.7 0.075 2.6E-06 52.8 12.2 111 343-462 175-287 (349)
58 2c1x_A UDP-glucose flavonoid 3 95.4 0.055 1.9E-06 55.9 10.2 143 355-515 272-422 (456)
59 3hbf_A Flavonoid 3-O-glucosylt 94.8 0.22 7.5E-06 51.3 12.2 134 355-505 274-415 (454)
60 2pq6_A UDP-glucuronosyl/UDP-gl 94.4 0.42 1.4E-05 49.6 13.7 144 355-516 296-450 (482)
61 2gt1_A Lipopolysaccharide hept 93.5 0.29 1E-05 47.7 9.7 98 356-462 180-279 (326)
62 2acv_A Triterpene UDP-glucosyl 93.0 0.6 2.1E-05 48.1 11.8 154 342-510 265-432 (463)
63 1xv5_A AGT, DNA alpha-glucosyl 90.9 8.3 0.00028 34.3 24.0 156 357-517 199-380 (401)
64 2vch_A Hydroquinone glucosyltr 89.8 2.3 7.8E-05 43.9 12.0 142 355-510 269-438 (480)
65 3to5_A CHEY homolog; alpha(5)b 85.6 5.6 0.00019 33.0 9.7 115 382-503 10-132 (134)
66 3grc_A Sensor protein, kinase; 84.6 12 0.0004 30.3 11.5 113 384-503 6-126 (140)
67 3l7i_A Teichoic acid biosynthe 84.5 5 0.00017 43.8 11.4 110 338-462 523-641 (729)
68 2yjn_A ERYCIII, glycosyltransf 84.3 0.57 2E-05 47.7 3.6 40 54-99 18-57 (441)
69 3nbm_A PTS system, lactose-spe 83.3 2.2 7.4E-05 34.2 5.8 44 53-102 3-46 (108)
70 4b4o_A Epimerase family protei 81.4 1.1 3.8E-05 42.7 4.2 32 57-98 1-32 (298)
71 3h5i_A Response regulator/sens 80.7 21 0.00072 28.9 12.1 112 384-503 5-123 (140)
72 4gi5_A Quinone reductase; prot 80.6 2.2 7.5E-05 40.6 5.8 40 54-97 20-60 (280)
73 2jzc_A UDP-N-acetylglucosamine 80.4 2 6.8E-05 39.4 5.2 45 413-463 115-160 (224)
74 3ty2_A 5'-nucleotidase SURE; s 80.3 1.3 4.5E-05 41.3 3.9 43 52-102 7-49 (261)
75 3h1g_A Chemotaxis protein CHEY 78.8 18 0.00061 28.8 10.4 113 384-503 5-126 (129)
76 2pln_A HP1043, response regula 77.1 17 0.00057 29.3 9.8 110 384-504 18-133 (137)
77 3ilh_A Two component response 76.7 28 0.00095 28.0 11.4 114 385-506 10-141 (146)
78 3n53_A Response regulator rece 75.2 27 0.00092 28.1 10.6 72 431-505 46-123 (140)
79 3cg4_A Response regulator rece 75.1 29 0.001 27.8 10.9 112 383-502 6-125 (142)
80 2zay_A Response regulator rece 74.8 11 0.00039 30.8 8.2 112 384-503 8-127 (147)
81 3jte_A Response regulator rece 74.6 16 0.00054 29.6 9.0 113 385-505 4-124 (143)
82 3nhm_A Response regulator; pro 74.3 30 0.001 27.3 12.0 110 385-504 5-122 (133)
83 3gl9_A Response regulator; bet 73.4 25 0.00085 27.6 9.7 110 386-503 4-121 (122)
84 3hdv_A Response regulator; PSI 72.8 30 0.001 27.6 10.3 114 384-505 7-128 (136)
85 2j48_A Two-component sensor ki 72.6 26 0.0009 26.7 9.6 108 385-503 2-117 (119)
86 3kht_A Response regulator; PSI 71.8 38 0.0013 27.3 11.6 113 384-502 5-126 (144)
87 2vch_A Hydroquinone glucosyltr 71.5 3.3 0.00011 42.7 4.6 41 54-100 4-45 (480)
88 3m6m_D Sensory/regulatory prot 70.9 27 0.00094 28.4 9.7 112 384-503 14-135 (143)
89 3heb_A Response regulator rece 70.7 35 0.0012 27.9 10.4 111 384-501 4-132 (152)
90 3cnb_A DNA-binding response re 70.7 39 0.0013 27.0 10.6 113 384-504 8-130 (143)
91 3hdg_A Uncharacterized protein 70.2 22 0.00075 28.5 8.8 113 384-504 7-125 (137)
92 3t6k_A Response regulator rece 70.0 33 0.0011 27.5 9.9 112 385-504 5-124 (136)
93 3lte_A Response regulator; str 69.9 37 0.0013 26.7 10.2 114 384-505 6-126 (132)
94 2hy5_A Putative sulfurtransfer 69.8 8.7 0.0003 31.5 6.1 41 57-100 1-42 (130)
95 2rjn_A Response regulator rece 69.7 23 0.00078 29.2 9.0 114 384-505 7-127 (154)
96 1wcv_1 SOJ, segregation protei 69.6 4.8 0.00017 37.4 5.0 39 54-98 3-43 (257)
97 2gkg_A Response regulator homo 69.0 38 0.0013 26.2 10.3 111 385-504 6-125 (127)
98 1jbe_A Chemotaxis protein CHEY 69.0 27 0.00094 27.4 9.1 112 384-502 4-123 (128)
99 2d1p_A TUSD, hypothetical UPF0 68.7 10 0.00034 31.8 6.2 42 55-99 11-53 (140)
100 3f6c_A Positive transcription 68.7 41 0.0014 26.5 10.2 114 385-504 2-120 (134)
101 1k68_A Phytochrome response re 68.0 43 0.0015 26.5 11.3 112 384-502 2-129 (140)
102 1kjn_A MTH0777; hypotethical p 68.0 10 0.00034 31.9 5.8 40 52-97 2-43 (157)
103 3hv2_A Response regulator/HD d 67.8 30 0.001 28.4 9.4 69 432-503 59-132 (153)
104 3gt7_A Sensor protein; structu 67.0 25 0.00087 29.0 8.7 112 384-503 7-126 (154)
105 3kcn_A Adenylate cyclase homol 66.9 39 0.0013 27.6 9.9 116 384-508 4-127 (151)
106 3mcu_A Dipicolinate synthase, 66.8 4.6 0.00016 36.4 3.9 38 55-100 4-43 (207)
107 3c3m_A Response regulator rece 66.7 44 0.0015 26.7 10.0 112 385-504 4-123 (138)
108 3hly_A Flavodoxin-like domain; 66.7 7.4 0.00025 33.3 5.2 37 57-98 1-37 (161)
109 3eul_A Possible nitrate/nitrit 66.7 40 0.0014 27.5 9.9 116 384-505 15-136 (152)
110 3hzh_A Chemotaxis response reg 66.3 51 0.0018 27.1 10.6 69 432-503 84-156 (157)
111 4e7p_A Response regulator; DNA 66.2 52 0.0018 26.7 11.7 114 385-504 21-140 (150)
112 2pq6_A UDP-glucuronosyl/UDP-gl 65.9 6 0.0002 40.7 5.2 38 56-99 8-45 (482)
113 3lqk_A Dipicolinate synthase s 65.8 4.9 0.00017 36.0 3.9 40 54-101 5-46 (201)
114 3i42_A Response regulator rece 65.4 37 0.0013 26.5 9.2 111 385-504 4-122 (127)
115 3c97_A Signal transduction his 64.7 53 0.0018 26.3 12.3 108 385-503 11-129 (140)
116 3f6p_A Transcriptional regulat 64.6 48 0.0016 25.7 9.6 111 385-503 3-118 (120)
117 2qzj_A Two-component response 64.6 25 0.00086 28.2 8.1 112 384-503 4-120 (136)
118 3eod_A Protein HNR; response r 64.0 34 0.0012 27.0 8.7 113 384-504 7-126 (130)
119 1qkk_A DCTD, C4-dicarboxylate 64.0 28 0.00095 28.6 8.4 114 385-506 4-123 (155)
120 2qr3_A Two-component system re 63.3 35 0.0012 27.2 8.7 112 385-504 4-126 (140)
121 4dad_A Putative pilus assembly 63.2 27 0.00092 28.3 8.1 70 431-503 67-140 (146)
122 1dbw_A Transcriptional regulat 63.0 34 0.0012 26.8 8.5 112 384-503 3-120 (126)
123 3f6r_A Flavodoxin; FMN binding 63.0 10 0.00035 31.6 5.3 38 57-99 2-39 (148)
124 1f4p_A Flavodoxin; electron tr 62.7 10 0.00035 31.5 5.2 37 57-98 1-37 (147)
125 2q62_A ARSH; alpha/beta, flavo 62.6 12 0.00042 34.6 6.2 51 45-98 23-73 (247)
126 3cg0_A Response regulator rece 62.4 57 0.0019 25.9 10.9 113 384-503 9-127 (140)
127 3fgn_A Dethiobiotin synthetase 61.8 15 0.00051 34.1 6.6 53 38-98 11-63 (251)
128 1k66_A Phytochrome response re 61.6 46 0.0016 26.7 9.3 112 384-502 6-136 (149)
129 3cfy_A Putative LUXO repressor 60.6 45 0.0015 26.7 9.0 110 386-503 6-121 (137)
130 1vi6_A 30S ribosomal protein S 60.3 12 0.00041 33.5 5.3 99 368-473 51-155 (208)
131 3tem_A Ribosyldihydronicotinam 60.2 11 0.00038 34.3 5.4 40 56-99 1-41 (228)
132 2qsj_A DNA-binding response re 59.1 71 0.0024 25.9 11.3 113 385-504 4-124 (154)
133 2r25_B Osmosensing histidine p 58.4 67 0.0023 25.4 10.1 112 385-503 3-126 (133)
134 3ew7_A LMO0794 protein; Q8Y8U8 58.1 8.4 0.00029 34.3 4.2 33 57-99 1-33 (221)
135 3crn_A Response regulator rece 57.7 68 0.0023 25.3 10.4 111 385-503 4-120 (132)
136 1ydg_A Trp repressor binding p 57.3 15 0.00053 32.6 5.8 39 55-98 5-43 (211)
137 3lua_A Response regulator rece 57.2 40 0.0014 27.0 8.0 114 384-505 4-128 (140)
138 3mc3_A DSRE/DSRF-like family p 56.9 21 0.00072 29.4 6.1 45 54-101 13-57 (134)
139 2zki_A 199AA long hypothetical 56.7 14 0.00047 32.5 5.3 37 56-98 4-40 (199)
140 1lss_A TRK system potassium up 56.7 9.1 0.00031 31.2 3.8 32 56-98 4-35 (140)
141 3h2s_A Putative NADH-flavin re 56.6 9.2 0.00032 34.2 4.2 32 57-98 1-32 (224)
142 2phj_A 5'-nucleotidase SURE; S 56.5 8.4 0.00029 35.7 3.8 38 57-102 2-39 (251)
143 1mb3_A Cell division response 56.2 67 0.0023 24.7 9.8 110 386-503 3-120 (124)
144 3bch_A 40S ribosomal protein S 56.0 17 0.00058 33.6 5.7 100 367-473 85-191 (253)
145 2e6c_A 5'-nucleotidase SURE; S 55.7 8.6 0.00029 35.5 3.7 38 57-102 1-38 (244)
146 1mvo_A PHOP response regulator 55.7 73 0.0025 25.0 10.7 112 385-504 4-121 (136)
147 1p9o_A Phosphopantothenoylcyst 55.2 4.8 0.00017 38.8 2.0 60 40-99 20-88 (313)
148 2a5l_A Trp repressor binding p 55.2 17 0.00058 31.9 5.6 37 57-98 6-42 (200)
149 3oh8_A Nucleoside-diphosphate 55.1 17 0.00057 37.6 6.4 36 54-99 145-180 (516)
150 2gwr_A DNA-binding response re 54.8 1.1E+02 0.0039 27.1 11.5 111 385-503 6-121 (238)
151 2xzm_B RPS0E; ribosome, transl 54.6 13 0.00044 34.2 4.6 100 368-473 48-154 (241)
152 1j9j_A Stationary phase surviV 54.5 9.5 0.00032 35.3 3.8 38 57-102 1-38 (247)
153 1jx7_A Hypothetical protein YC 54.3 20 0.00068 28.3 5.4 41 57-100 2-44 (117)
154 1srr_A SPO0F, sporulation resp 54.1 73 0.0025 24.6 9.7 111 385-503 4-120 (124)
155 1kgs_A DRRD, DNA binding respo 54.1 1.1E+02 0.0038 26.7 11.2 111 385-503 3-119 (225)
156 2qv0_A Protein MRKE; structura 54.0 81 0.0028 25.1 11.1 111 384-503 9-126 (143)
157 2qxy_A Response regulator; reg 53.8 35 0.0012 27.4 7.1 114 384-505 4-122 (142)
158 1fjh_A 3alpha-hydroxysteroid d 53.7 13 0.00043 34.2 4.7 33 57-98 1-33 (257)
159 3vps_A TUNA, NAD-dependent epi 53.6 9.3 0.00032 36.3 3.8 35 55-99 6-40 (321)
160 3r0j_A Possible two component 53.3 1E+02 0.0034 27.7 11.0 112 384-503 23-140 (250)
161 3e8x_A Putative NAD-dependent 53.2 12 0.0004 34.0 4.3 36 54-99 19-54 (236)
162 1tmy_A CHEY protein, TMY; chem 53.1 74 0.0025 24.3 9.3 111 385-502 3-119 (120)
163 1l5x_A SurviVal protein E; str 52.3 11 0.00038 35.5 4.0 38 57-102 1-38 (280)
164 1i3c_A Response regulator RCP1 52.3 92 0.0031 25.1 11.6 113 384-502 8-135 (149)
165 3qvo_A NMRA family protein; st 52.1 10 0.00035 34.4 3.7 35 56-99 22-57 (236)
166 2g1u_A Hypothetical protein TM 52.0 14 0.00047 31.1 4.3 39 50-99 13-51 (155)
167 3r6d_A NAD-dependent epimerase 51.8 18 0.00062 32.2 5.4 34 56-98 4-38 (221)
168 3cz5_A Two-component response 51.8 94 0.0032 25.1 10.0 113 384-503 5-124 (153)
169 1ys7_A Transcriptional regulat 51.7 1.2E+02 0.0043 26.5 12.9 112 384-503 7-124 (233)
170 2dkn_A 3-alpha-hydroxysteroid 51.6 14 0.00048 33.6 4.6 33 57-98 1-33 (255)
171 1dcf_A ETR1 protein; beta-alph 51.6 26 0.0009 28.0 5.9 113 384-504 7-129 (136)
172 3b2n_A Uncharacterized protein 51.5 87 0.003 24.6 10.2 113 385-504 4-123 (133)
173 1p6q_A CHEY2; chemotaxis, sign 51.4 46 0.0016 26.0 7.4 111 385-502 7-125 (129)
174 2qyt_A 2-dehydropantoate 2-red 51.2 7.8 0.00027 37.0 2.9 37 51-98 3-45 (317)
175 2ph1_A Nucleotide-binding prot 51.2 14 0.00048 34.2 4.6 36 57-98 18-55 (262)
176 4g65_A TRK system potassium up 51.0 5.1 0.00017 41.1 1.5 64 399-463 267-333 (461)
177 2v4n_A Multifunctional protein 50.9 12 0.00042 34.7 3.9 39 56-102 1-39 (254)
178 3guy_A Short-chain dehydrogena 50.8 12 0.00042 33.7 4.0 33 57-98 1-33 (230)
179 2a9o_A Response regulator; ess 50.8 80 0.0027 24.0 10.5 110 386-503 3-117 (120)
180 3k9g_A PF-32 protein; ssgcid, 50.6 8.9 0.0003 35.7 3.1 41 52-99 22-64 (267)
181 3bbn_B Ribosomal protein S2; s 50.4 81 0.0028 28.7 9.3 38 432-473 158-197 (231)
182 3l4b_C TRKA K+ channel protien 50.4 12 0.00042 33.5 3.9 23 76-98 9-31 (218)
183 2jba_A Phosphate regulon trans 50.2 38 0.0013 26.4 6.6 111 385-503 3-121 (127)
184 1hdo_A Biliverdin IX beta redu 49.6 17 0.00057 31.8 4.6 33 57-99 4-36 (206)
185 3rqi_A Response regulator prot 49.6 39 0.0013 28.9 7.0 112 384-503 7-124 (184)
186 1rpn_A GDP-mannose 4,6-dehydra 49.6 13 0.00044 35.6 4.2 39 51-99 9-47 (335)
187 2ayx_A Sensor kinase protein R 49.5 1.1E+02 0.0038 27.7 10.6 57 444-503 187-246 (254)
188 3ruf_A WBGU; rossmann fold, UD 49.5 6.7 0.00023 38.1 2.1 36 54-99 23-58 (351)
189 1mvl_A PPC decarboxylase athal 49.2 13 0.00044 33.5 3.7 39 53-100 16-55 (209)
190 3fwz_A Inner membrane protein 49.2 16 0.00055 30.1 4.2 35 54-99 5-39 (140)
191 3fni_A Putative diflavin flavo 49.1 31 0.0011 29.2 6.1 39 56-99 4-42 (159)
192 3dqp_A Oxidoreductase YLBE; al 49.0 11 0.00038 33.7 3.4 33 57-99 1-33 (219)
193 3zqu_A Probable aromatic acid 48.6 24 0.00081 31.7 5.4 37 56-99 4-40 (209)
194 3ic5_A Putative saccharopine d 48.3 19 0.00065 28.1 4.4 33 55-98 4-37 (118)
195 2x4g_A Nucleoside-diphosphate- 48.1 15 0.00053 35.2 4.5 35 55-99 12-46 (342)
196 2ark_A Flavodoxin; FMN, struct 47.7 23 0.00077 30.9 5.1 38 56-98 4-42 (188)
197 3llv_A Exopolyphosphatase-rela 47.6 13 0.00043 30.6 3.2 23 76-98 15-37 (141)
198 1zgz_A Torcad operon transcrip 47.5 92 0.0032 23.8 9.9 110 385-502 3-117 (122)
199 4id9_A Short-chain dehydrogena 47.5 12 0.00042 36.0 3.7 38 52-99 15-52 (347)
200 1xhf_A DYE resistance, aerobic 47.2 94 0.0032 23.8 10.0 110 385-502 4-118 (123)
201 3nvt_A 3-deoxy-D-arabino-heptu 47.2 1.7E+02 0.0059 28.7 11.9 100 359-462 145-256 (385)
202 1bvy_F Protein (cytochrome P45 47.2 17 0.00057 32.1 4.1 49 44-99 11-59 (191)
203 3rpe_A MDAB, modulator of drug 47.0 30 0.001 31.3 5.8 42 56-99 25-69 (218)
204 2pl1_A Transcriptional regulat 46.9 94 0.0032 23.7 10.7 109 386-502 2-116 (121)
205 2rdm_A Response regulator rece 46.6 1E+02 0.0034 24.0 11.0 111 384-504 5-123 (132)
206 3b6i_A Flavoprotein WRBA; flav 46.5 24 0.00083 30.8 5.2 37 57-98 2-39 (198)
207 1id1_A Putative potassium chan 46.0 22 0.00075 29.7 4.6 24 76-99 12-35 (153)
208 1zh2_A KDP operon transcriptio 46.0 96 0.0033 23.6 8.5 109 386-502 3-116 (121)
209 3j20_B 30S ribosomal protein S 45.8 22 0.00077 31.6 4.7 99 368-473 47-151 (202)
210 1s8n_A Putative antiterminator 45.3 1.5E+02 0.005 25.5 14.2 112 385-503 14-130 (205)
211 2l2q_A PTS system, cellobiose- 44.9 30 0.001 27.3 5.0 42 55-102 3-44 (109)
212 1sbz_A Probable aromatic acid 44.4 24 0.00083 31.3 4.7 36 57-99 1-37 (197)
213 3n0r_A Response regulator; sig 44.4 2E+02 0.0068 26.7 12.3 120 374-503 149-276 (286)
214 3mm4_A Histidine kinase homolo 44.3 1.1E+02 0.0038 26.6 9.4 71 431-506 119-198 (206)
215 3l77_A Short-chain alcohol deh 43.9 25 0.00084 31.7 4.9 33 57-98 2-34 (235)
216 3r6w_A FMN-dependent NADH-azor 43.5 27 0.00092 31.1 5.0 40 57-98 2-43 (212)
217 1t5b_A Acyl carrier protein ph 43.4 31 0.0011 30.0 5.5 40 57-98 2-43 (201)
218 3qjg_A Epidermin biosynthesis 43.2 17 0.00058 31.6 3.4 36 57-100 6-42 (175)
219 3m2p_A UDP-N-acetylglucosamine 42.8 20 0.00068 33.9 4.3 34 56-99 2-35 (311)
220 2hy5_B Intracellular sulfur ox 42.8 35 0.0012 28.2 5.2 42 56-100 4-46 (136)
221 3bfv_A CAPA1, CAPB2, membrane 42.5 45 0.0015 31.1 6.6 40 54-97 79-118 (271)
222 3a10_A Response regulator; pho 42.4 1.1E+02 0.0037 23.1 12.5 107 386-502 3-115 (116)
223 1yxm_A Pecra, peroxisomal tran 42.4 30 0.001 32.6 5.4 32 58-98 19-50 (303)
224 1tvm_A PTS system, galactitol- 42.3 57 0.0019 25.8 6.2 43 54-101 19-61 (113)
225 3gd5_A Otcase, ornithine carba 42.1 2.3E+02 0.0077 27.1 11.5 104 307-440 128-234 (323)
226 4ep1_A Otcase, ornithine carba 41.9 2.2E+02 0.0077 27.4 11.5 85 342-440 169-256 (340)
227 1y1p_A ARII, aldehyde reductas 41.8 26 0.00088 33.4 5.0 35 54-98 9-43 (342)
228 4dzz_A Plasmid partitioning pr 41.8 32 0.0011 30.0 5.3 36 57-98 1-38 (206)
229 3i4f_A 3-oxoacyl-[acyl-carrier 41.6 21 0.00073 32.8 4.2 34 56-98 6-39 (264)
230 1d4a_A DT-diaphorase, quinone 41.5 36 0.0012 31.8 5.8 39 56-98 2-41 (273)
231 1zmt_A Haloalcohol dehalogenas 41.5 16 0.00053 33.7 3.2 33 57-98 1-33 (254)
232 1yio_A Response regulatory pro 41.5 1.4E+02 0.0048 25.6 9.6 113 384-504 4-122 (208)
233 3auf_A Glycinamide ribonucleot 41.2 80 0.0027 28.6 7.8 36 55-99 21-58 (229)
234 4f3y_A DHPR, dihydrodipicolina 41.1 29 0.001 32.5 5.0 44 425-470 67-110 (272)
235 1ykg_A SIR-FP, sulfite reducta 40.8 21 0.0007 30.6 3.6 38 56-98 9-46 (167)
236 1cyd_A Carbonyl reductase; sho 40.8 31 0.001 31.1 5.1 24 72-98 16-39 (244)
237 2hqr_A Putative transcriptiona 40.8 56 0.0019 28.8 6.8 107 387-504 3-115 (223)
238 2fzv_A Putative arsenical resi 40.5 36 0.0012 32.1 5.5 41 54-98 56-97 (279)
239 2d1p_B TUSC, hypothetical UPF0 40.5 43 0.0015 26.8 5.3 40 58-100 3-42 (119)
240 3q9s_A DNA-binding response re 40.4 89 0.0031 28.2 8.3 69 432-503 82-153 (249)
241 3sc6_A DTDP-4-dehydrorhamnose 40.4 9.8 0.00034 35.6 1.6 32 57-98 6-37 (287)
242 4hb9_A Similarities with proba 40.3 18 0.00061 35.6 3.6 30 56-96 1-30 (412)
243 2b69_A UDP-glucuronate decarbo 40.0 23 0.00079 34.0 4.3 36 54-99 25-60 (343)
244 3cio_A ETK, tyrosine-protein k 40.0 41 0.0014 31.8 6.0 41 54-98 101-141 (299)
245 3gpi_A NAD-dependent epimerase 39.9 25 0.00085 32.7 4.4 33 56-99 3-35 (286)
246 1kyq_A Met8P, siroheme biosynt 39.9 18 0.00061 34.0 3.3 35 55-100 12-46 (274)
247 1e2b_A Enzyme IIB-cellobiose; 39.9 57 0.0019 25.5 5.8 42 56-103 3-44 (106)
248 2vzf_A NADH-dependent FMN redu 39.8 33 0.0011 30.1 5.0 39 57-98 3-42 (197)
249 3g0o_A 3-hydroxyisobutyrate de 39.8 20 0.00069 34.0 3.8 33 54-97 5-37 (303)
250 1sqs_A Conserved hypothetical 39.8 35 0.0012 31.1 5.3 39 57-98 2-41 (242)
251 2q9u_A A-type flavoprotein; fl 39.8 35 0.0012 33.9 5.7 54 39-98 240-293 (414)
252 2oqr_A Sensory transduction pr 39.6 1.3E+02 0.0044 26.4 9.1 112 385-504 5-121 (230)
253 2ywr_A Phosphoribosylglycinami 39.5 78 0.0027 28.3 7.5 33 57-98 2-36 (216)
254 3l6e_A Oxidoreductase, short-c 39.5 30 0.001 31.3 4.8 33 57-98 3-35 (235)
255 1t0i_A YLR011WP; FMN binding p 39.4 42 0.0014 29.1 5.6 39 57-98 1-45 (191)
256 1zq6_A Otcase, ornithine carba 39.2 2.1E+02 0.007 27.9 10.8 90 342-440 178-274 (359)
257 3ug7_A Arsenical pump-driving 39.2 27 0.00091 34.1 4.6 39 55-99 23-63 (349)
258 2ohh_A Type A flavoprotein FPR 39.1 58 0.002 32.0 7.3 66 25-98 228-293 (404)
259 2rh8_A Anthocyanidin reductase 39.1 25 0.00084 33.7 4.3 33 56-98 9-41 (338)
260 3ius_A Uncharacterized conserv 39.0 23 0.00078 32.9 4.0 24 76-99 14-37 (286)
261 2qvg_A Two component response 39.0 1.4E+02 0.0048 23.5 11.2 111 384-501 7-132 (143)
262 3p0r_A Azoreductase; structura 38.7 40 0.0014 30.0 5.4 41 56-98 4-47 (211)
263 3doj_A AT3G25530, dehydrogenas 38.7 25 0.00085 33.5 4.2 35 53-98 18-52 (310)
264 2hna_A Protein MIOC, flavodoxi 38.7 28 0.00096 28.8 4.1 36 57-97 2-37 (147)
265 3sxp_A ADP-L-glycero-D-mannohe 38.7 31 0.0011 33.4 5.1 37 53-99 7-45 (362)
266 4da9_A Short-chain dehydrogena 38.6 39 0.0013 31.5 5.5 34 56-98 28-61 (280)
267 3iz6_A 40S ribosomal protein S 38.5 42 0.0014 31.7 5.5 99 368-473 57-162 (305)
268 3pg5_A Uncharacterized protein 38.3 28 0.00097 34.0 4.6 36 57-98 1-38 (361)
269 3d7l_A LIN1944 protein; APC893 38.2 25 0.00085 30.7 3.9 33 55-98 2-34 (202)
270 2ew2_A 2-dehydropantoate 2-red 38.1 21 0.00073 33.7 3.6 32 56-98 3-34 (316)
271 1jay_A Coenzyme F420H2:NADP+ o 38.0 25 0.00084 31.1 3.9 24 75-98 9-32 (212)
272 3ioy_A Short-chain dehydrogena 38.0 40 0.0014 32.2 5.6 33 57-98 8-40 (319)
273 2hpv_A FMN-dependent NADH-azor 38.0 41 0.0014 29.7 5.3 40 57-98 2-44 (208)
274 2wsb_A Galactitol dehydrogenas 38.0 41 0.0014 30.5 5.5 32 58-98 12-43 (254)
275 3ko8_A NAD-dependent epimerase 37.8 24 0.00082 33.2 4.0 32 57-98 1-32 (312)
276 4egb_A DTDP-glucose 4,6-dehydr 37.6 20 0.00069 34.4 3.4 35 54-98 22-56 (346)
277 4e6p_A Probable sorbitol dehyd 37.4 39 0.0013 31.0 5.2 32 58-98 9-40 (259)
278 3u5c_A 40S ribosomal protein S 37.2 30 0.001 31.9 4.2 100 367-473 51-157 (252)
279 3i6i_A Putative leucoanthocyan 37.1 23 0.00079 34.1 3.8 34 56-99 10-43 (346)
280 3k96_A Glycerol-3-phosphate de 36.9 20 0.00068 35.2 3.2 34 54-98 27-60 (356)
281 1dhr_A Dihydropteridine reduct 36.9 32 0.0011 31.2 4.5 33 58-99 8-40 (241)
282 3f2v_A General stress protein 36.9 23 0.00077 31.3 3.3 36 57-97 2-37 (192)
283 2pzm_A Putative nucleotide sug 36.8 29 0.00099 33.1 4.4 36 53-98 17-52 (330)
284 3q9l_A Septum site-determining 36.6 45 0.0015 30.4 5.5 37 57-99 2-40 (260)
285 1hyq_A MIND, cell division inh 36.2 47 0.0016 30.3 5.7 36 57-98 2-39 (263)
286 3dhn_A NAD-dependent epimerase 36.2 29 0.001 30.8 4.1 27 73-99 11-37 (227)
287 4dik_A Flavoprotein; TM0755, e 35.9 71 0.0024 31.9 7.2 66 26-97 236-301 (410)
288 2ydy_A Methionine adenosyltran 35.5 25 0.00086 33.2 3.7 32 56-97 2-33 (315)
289 4e3z_A Putative oxidoreductase 35.4 30 0.001 32.0 4.1 34 56-98 25-58 (272)
290 2lpm_A Two-component response 35.4 67 0.0023 25.8 5.7 109 384-502 8-120 (123)
291 3of5_A Dethiobiotin synthetase 35.3 58 0.002 29.4 6.0 39 56-98 3-41 (228)
292 2zkq_b 40S ribosomal protein S 35.3 40 0.0014 31.8 4.8 99 368-473 53-158 (295)
293 2afh_E Nitrogenase iron protei 35.2 50 0.0017 30.8 5.8 35 56-97 1-37 (289)
294 3dfi_A Pseudoaglycone deacetyl 35.1 54 0.0018 30.6 5.8 43 53-101 4-46 (270)
295 3s40_A Diacylglycerol kinase; 35.0 61 0.0021 30.7 6.3 48 52-102 4-51 (304)
296 2c5a_A GDP-mannose-3', 5'-epim 34.9 38 0.0013 33.1 5.0 35 55-99 28-62 (379)
297 3la6_A Tyrosine-protein kinase 34.9 51 0.0018 31.0 5.7 41 54-98 89-129 (286)
298 2acv_A Triterpene UDP-glucosyl 34.7 33 0.0011 34.8 4.6 40 55-100 8-49 (463)
299 3ijp_A DHPR, dihydrodipicolina 34.6 39 0.0013 32.0 4.7 43 425-469 82-124 (288)
300 2pk3_A GDP-6-deoxy-D-LYXO-4-he 34.5 30 0.001 32.7 4.1 34 56-98 11-44 (321)
301 4hs4_A Chromate reductase; tri 34.4 23 0.00079 31.4 3.0 39 54-96 4-43 (199)
302 3rft_A Uronate dehydrogenase; 34.2 23 0.00078 32.8 3.0 34 57-99 3-36 (267)
303 2ph3_A 3-oxoacyl-[acyl carrier 34.1 27 0.00093 31.5 3.5 32 57-97 1-32 (245)
304 1g3q_A MIND ATPase, cell divis 34.1 53 0.0018 29.3 5.5 37 57-99 2-40 (237)
305 3qxc_A Dethiobiotin synthetase 34.1 61 0.0021 29.7 5.9 42 53-98 17-58 (242)
306 2pd6_A Estradiol 17-beta-dehyd 33.8 53 0.0018 29.9 5.6 32 58-98 8-39 (264)
307 2r85_A PURP protein PF1517; AT 33.8 29 0.00098 33.1 3.8 32 56-99 2-33 (334)
308 1ycg_A Nitric oxide reductase; 33.7 75 0.0026 31.1 7.0 67 25-98 222-288 (398)
309 3tqr_A Phosphoribosylglycinami 33.7 1.2E+02 0.0041 27.2 7.6 38 54-100 3-41 (215)
310 1a04_A Nitrate/nitrite respons 33.6 1.6E+02 0.0053 25.5 8.6 112 385-503 6-124 (215)
311 3i1j_A Oxidoreductase, short c 33.3 51 0.0017 29.7 5.3 33 57-98 14-46 (247)
312 1dz3_A Stage 0 sporulation pro 33.3 1.7E+02 0.0057 22.6 8.3 112 385-503 3-122 (130)
313 3kl4_A SRP54, signal recogniti 33.2 3.8E+02 0.013 26.7 12.3 77 452-533 262-340 (433)
314 3lcm_A SMU.1420, putative oxid 33.2 38 0.0013 29.8 4.2 38 57-99 1-39 (196)
315 3end_A Light-independent proto 33.2 55 0.0019 30.8 5.7 42 52-98 36-77 (307)
316 2z1m_A GDP-D-mannose dehydrata 33.1 32 0.0011 32.8 4.0 33 56-98 3-35 (345)
317 3ftp_A 3-oxoacyl-[acyl-carrier 33.1 42 0.0014 31.1 4.8 34 56-98 27-60 (270)
318 4dll_A 2-hydroxy-3-oxopropiona 33.1 25 0.00085 33.7 3.2 34 53-97 28-61 (320)
319 3kto_A Response regulator rece 33.1 34 0.0012 27.3 3.6 112 385-504 7-126 (136)
320 4huj_A Uncharacterized protein 33.1 29 0.001 31.1 3.5 31 56-97 23-53 (220)
321 3orf_A Dihydropteridine reduct 33.1 42 0.0014 30.6 4.7 34 57-99 22-55 (251)
322 3dfu_A Uncharacterized protein 33.0 11 0.00039 34.4 0.7 34 54-98 4-37 (232)
323 3snk_A Response regulator CHEY 33.0 40 0.0014 26.8 4.1 69 432-503 60-132 (135)
324 1vl0_A DTDP-4-dehydrorhamnose 33.0 21 0.0007 33.4 2.5 37 52-98 8-44 (292)
325 2f5x_A BUGD; periplasmic bindi 32.7 3.2E+02 0.011 25.7 13.3 154 356-520 112-281 (312)
326 1wma_A Carbonyl reductase [NAD 32.6 40 0.0014 30.8 4.5 33 57-98 4-37 (276)
327 2ae2_A Protein (tropinone redu 32.6 56 0.0019 29.9 5.5 32 58-98 10-41 (260)
328 2gk4_A Conserved hypothetical 32.5 35 0.0012 31.2 3.8 25 71-98 27-51 (232)
329 3enk_A UDP-glucose 4-epimerase 32.4 39 0.0013 32.2 4.5 35 55-99 4-38 (341)
330 1vl8_A Gluconate 5-dehydrogena 32.4 52 0.0018 30.3 5.3 33 57-98 21-53 (267)
331 2zat_A Dehydrogenase/reductase 32.4 42 0.0014 30.7 4.6 32 58-98 15-46 (260)
332 2b4q_A Rhamnolipids biosynthes 32.3 49 0.0017 30.7 5.1 49 39-97 12-60 (276)
333 1rkx_A CDP-glucose-4,6-dehydra 32.3 38 0.0013 32.6 4.4 34 56-99 9-42 (357)
334 3i83_A 2-dehydropantoate 2-red 32.2 29 0.00098 33.3 3.5 33 56-99 2-34 (320)
335 4dyv_A Short-chain dehydrogena 32.2 36 0.0012 31.7 4.1 34 56-98 27-60 (272)
336 1qo0_D AMIR; binding protein, 32.2 1.5E+02 0.005 25.2 8.1 109 384-503 12-124 (196)
337 3dff_A Teicoplanin pseudoaglyc 32.1 59 0.002 30.4 5.5 41 55-101 6-46 (273)
338 3fkq_A NTRC-like two-domain pr 32.1 1.1E+02 0.0036 29.9 7.7 42 52-99 138-181 (373)
339 3v8b_A Putative dehydrogenase, 31.9 48 0.0016 31.0 4.9 33 57-98 28-60 (283)
340 3h7a_A Short chain dehydrogena 31.9 52 0.0018 30.0 5.1 33 57-98 7-39 (252)
341 2p5y_A UDP-glucose 4-epimerase 31.9 31 0.0011 32.5 3.7 24 72-98 9-32 (311)
342 1ek6_A UDP-galactose 4-epimera 31.6 37 0.0013 32.4 4.3 24 72-98 11-34 (348)
343 3t7c_A Carveol dehydrogenase; 31.6 55 0.0019 30.7 5.4 33 57-98 28-60 (299)
344 4iiu_A 3-oxoacyl-[acyl-carrier 31.3 39 0.0013 31.1 4.2 32 58-98 27-58 (267)
345 1xg5_A ARPG836; short chain de 31.3 56 0.0019 30.2 5.3 32 58-98 33-64 (279)
346 3ego_A Probable 2-dehydropanto 31.2 40 0.0014 32.1 4.3 32 56-99 2-33 (307)
347 1ks9_A KPA reductase;, 2-dehyd 31.2 33 0.0011 32.0 3.6 31 57-98 1-31 (291)
348 2a35_A Hypothetical protein PA 31.2 29 0.00098 30.5 3.1 34 55-98 4-39 (215)
349 1sb8_A WBPP; epimerase, 4-epim 31.2 40 0.0014 32.4 4.4 34 56-99 27-60 (352)
350 2dvz_A BUGE, putative exported 31.0 3.4E+02 0.012 25.6 13.6 151 356-517 116-282 (314)
351 1nff_A Putative oxidoreductase 31.0 59 0.002 29.8 5.4 32 58-98 8-39 (260)
352 3slg_A PBGP3 protein; structur 30.7 33 0.0011 33.3 3.7 35 55-99 23-58 (372)
353 2bka_A CC3, TAT-interacting pr 30.6 45 0.0015 29.9 4.4 34 56-99 18-53 (242)
354 3ea0_A ATPase, para family; al 30.6 55 0.0019 29.4 5.0 38 55-98 2-42 (245)
355 3l6d_A Putative oxidoreductase 30.5 41 0.0014 31.9 4.2 33 54-97 7-39 (306)
356 2rhc_B Actinorhodin polyketide 30.5 63 0.0022 29.9 5.5 32 58-98 23-54 (277)
357 3hn2_A 2-dehydropantoate 2-red 30.5 32 0.0011 32.8 3.4 33 56-99 2-34 (312)
358 3klo_A Transcriptional regulat 30.4 1.4E+02 0.0049 26.1 7.8 113 384-503 7-128 (225)
359 1w25_A Stalked-cell differenti 30.3 3.2E+02 0.011 27.0 11.3 113 386-506 3-123 (459)
360 3kjh_A CO dehydrogenase/acetyl 30.3 38 0.0013 30.5 3.9 34 57-98 1-36 (254)
361 1gy8_A UDP-galactose 4-epimera 30.3 43 0.0015 32.8 4.5 33 56-98 2-35 (397)
362 4eso_A Putative oxidoreductase 30.3 60 0.002 29.7 5.2 32 58-98 9-40 (255)
363 2vns_A Metalloreductase steap3 30.2 34 0.0012 30.5 3.4 33 55-98 27-59 (215)
364 1ooe_A Dihydropteridine reduct 30.1 46 0.0016 29.9 4.4 33 58-99 4-36 (236)
365 3n7t_A Macrophage binding prot 30.1 79 0.0027 29.0 6.0 46 56-101 9-59 (247)
366 2ejb_A Probable aromatic acid 30.1 68 0.0023 28.1 5.2 35 57-99 2-37 (189)
367 3p19_A BFPVVD8, putative blue 30.0 51 0.0017 30.4 4.7 33 57-98 16-48 (266)
368 4had_A Probable oxidoreductase 30.0 84 0.0029 30.1 6.6 75 373-460 39-115 (350)
369 1udb_A Epimerase, UDP-galactos 30.0 38 0.0013 32.3 4.0 23 72-97 9-31 (338)
370 3v2h_A D-beta-hydroxybutyrate 29.9 54 0.0018 30.5 4.9 33 57-98 25-57 (281)
371 3edm_A Short chain dehydrogena 29.6 57 0.002 29.8 5.0 32 58-98 9-40 (259)
372 2r6j_A Eugenol synthase 1; phe 29.5 26 0.00088 33.2 2.6 25 72-99 20-44 (318)
373 4egs_A Ribose 5-phosphate isom 29.5 61 0.0021 28.1 4.8 42 51-98 29-71 (180)
374 1rtt_A Conserved hypothetical 29.5 25 0.00084 30.7 2.3 40 55-98 5-44 (193)
375 1i24_A Sulfolipid biosynthesis 29.5 38 0.0013 33.2 4.0 25 73-97 18-42 (404)
376 2fb6_A Conserved hypothetical 29.4 54 0.0019 26.2 4.1 39 57-99 8-48 (117)
377 2b4a_A BH3024; flavodoxin-like 29.4 2E+02 0.0069 22.4 10.7 110 384-505 15-132 (138)
378 1pvv_A Otcase, ornithine carba 29.3 3.7E+02 0.013 25.5 10.7 85 342-440 145-232 (315)
379 3g17_A Similar to 2-dehydropan 29.3 31 0.001 32.6 3.1 33 56-99 2-34 (294)
380 3m1a_A Putative dehydrogenase; 29.3 44 0.0015 31.0 4.2 33 57-98 5-37 (281)
381 2ew8_A (S)-1-phenylethanol deh 29.3 63 0.0022 29.3 5.2 32 58-98 8-39 (249)
382 3qsg_A NAD-binding phosphogluc 29.1 33 0.0011 32.8 3.2 34 54-98 22-56 (312)
383 3dtt_A NADP oxidoreductase; st 29.1 43 0.0015 30.6 4.0 35 53-98 16-50 (245)
384 3ph3_A Ribose-5-phosphate isom 29.0 69 0.0024 27.5 4.8 38 53-98 17-54 (169)
385 3d3w_A L-xylulose reductase; u 28.9 75 0.0026 28.4 5.7 24 72-98 16-39 (244)
386 2cfc_A 2-(R)-hydroxypropyl-COM 28.9 57 0.0019 29.4 4.8 32 58-98 3-34 (250)
387 2jah_A Clavulanic acid dehydro 28.8 68 0.0023 29.0 5.3 32 58-98 8-39 (247)
388 1n7h_A GDP-D-mannose-4,6-dehyd 28.7 43 0.0015 32.6 4.1 25 72-99 37-61 (381)
389 3c1o_A Eugenol synthase; pheny 28.6 29 0.001 32.9 2.8 34 56-99 4-37 (321)
390 3pxx_A Carveol dehydrogenase; 28.6 67 0.0023 29.7 5.4 32 58-98 11-42 (287)
391 3rkr_A Short chain oxidoreduct 28.6 58 0.002 29.8 4.8 32 58-98 30-61 (262)
392 1e6u_A GDP-fucose synthetase; 28.6 28 0.00096 32.9 2.7 32 56-97 3-34 (321)
393 2nzw_A Alpha1,3-fucosyltransfe 28.5 1E+02 0.0036 30.1 6.7 57 449-513 252-309 (371)
394 1lld_A L-lactate dehydrogenase 28.5 51 0.0018 31.3 4.6 34 54-98 5-40 (319)
395 1xgk_A Nitrogen metabolite rep 28.4 45 0.0015 32.3 4.2 34 56-99 5-38 (352)
396 1p2f_A Response regulator; DRR 28.4 92 0.0032 27.2 6.1 109 386-503 4-116 (220)
397 3u7i_A FMN-dependent NADH-azor 28.4 81 0.0028 28.3 5.7 42 56-98 4-49 (223)
398 2gdz_A NAD+-dependent 15-hydro 28.3 70 0.0024 29.3 5.4 32 58-98 8-39 (267)
399 1qsg_A Enoyl-[acyl-carrier-pro 28.3 67 0.0023 29.4 5.2 32 58-98 10-43 (265)
400 3f1l_A Uncharacterized oxidore 28.3 77 0.0026 28.8 5.6 33 57-98 12-44 (252)
401 2i6u_A Otcase, ornithine carba 28.2 3.9E+02 0.013 25.3 10.9 86 342-440 138-226 (307)
402 2dtx_A Glucose 1-dehydrogenase 28.2 56 0.0019 30.0 4.7 32 58-98 9-40 (264)
403 1o5i_A 3-oxoacyl-(acyl carrier 28.1 69 0.0023 29.1 5.2 32 58-98 20-51 (249)
404 3sju_A Keto reductase; short-c 28.0 57 0.0019 30.3 4.7 33 57-98 24-56 (279)
405 3tox_A Short chain dehydrogena 28.0 46 0.0016 31.0 4.0 31 58-97 9-39 (280)
406 1zem_A Xylitol dehydrogenase; 28.0 68 0.0023 29.3 5.2 32 58-98 8-39 (262)
407 3tzq_B Short-chain type dehydr 27.9 68 0.0023 29.6 5.2 34 57-99 11-44 (271)
408 2a4k_A 3-oxoacyl-[acyl carrier 27.9 70 0.0024 29.3 5.3 32 58-98 7-38 (263)
409 1orr_A CDP-tyvelose-2-epimeras 27.7 42 0.0014 32.0 3.9 24 72-98 10-33 (347)
410 2c20_A UDP-glucose 4-epimerase 27.7 46 0.0016 31.5 4.1 24 72-98 10-33 (330)
411 3awd_A GOX2181, putative polyo 27.7 60 0.0021 29.4 4.8 32 58-98 14-45 (260)
412 1qzu_A Hypothetical protein MD 27.7 36 0.0012 30.4 3.0 40 54-100 17-57 (206)
413 1cp2_A CP2, nitrogenase iron p 27.6 71 0.0024 29.2 5.3 35 57-98 1-37 (269)
414 2x5n_A SPRPN10, 26S proteasome 27.6 1.4E+02 0.0048 26.0 7.0 50 358-410 111-160 (192)
415 2q1s_A Putative nucleotide sug 27.5 41 0.0014 32.8 3.8 35 55-99 31-66 (377)
416 2z1n_A Dehydrogenase; reductas 27.5 79 0.0027 28.8 5.6 32 58-98 8-39 (260)
417 3lf2_A Short chain oxidoreduct 27.4 76 0.0026 29.1 5.4 33 57-98 8-40 (265)
418 2hmt_A YUAA protein; RCK, KTN, 27.4 47 0.0016 26.7 3.6 22 77-98 16-37 (144)
419 2pnf_A 3-oxoacyl-[acyl-carrier 27.4 66 0.0022 28.9 5.0 24 72-98 16-39 (248)
420 1zmo_A Halohydrin dehalogenase 27.3 37 0.0013 30.8 3.2 30 58-96 2-31 (244)
421 3o26_A Salutaridine reductase; 27.3 52 0.0018 30.8 4.3 33 57-98 12-44 (311)
422 2o23_A HADH2 protein; HSD17B10 27.3 72 0.0025 29.0 5.3 33 58-99 13-45 (265)
423 2w37_A Ornithine carbamoyltran 27.2 4.4E+02 0.015 25.5 11.1 86 342-440 166-254 (359)
424 3nyw_A Putative oxidoreductase 27.2 61 0.0021 29.5 4.7 32 58-98 8-39 (250)
425 2d1y_A Hypothetical protein TT 27.1 72 0.0025 29.0 5.2 32 58-98 7-38 (256)
426 3c24_A Putative oxidoreductase 27.0 56 0.0019 30.4 4.5 33 56-98 11-43 (286)
427 3tpc_A Short chain alcohol deh 26.7 74 0.0025 28.9 5.2 33 58-99 8-40 (257)
428 3ghy_A Ketopantoate reductase 26.7 40 0.0014 32.5 3.4 32 56-98 3-34 (335)
429 3s2y_A Chromate reductase; ura 32.7 14 0.00046 32.9 0.0 39 53-96 3-42 (199)
430 3zq6_A Putative arsenical pump 26.7 83 0.0029 30.0 5.7 40 54-99 10-51 (324)
431 5nul_A Flavodoxin; electron tr 26.6 58 0.002 26.3 4.0 29 71-99 8-36 (138)
432 1g63_A Epidermin modifying enz 26.5 40 0.0014 29.4 3.0 37 57-100 3-39 (181)
433 3dii_A Short-chain dehydrogena 26.5 66 0.0023 29.1 4.8 31 58-97 3-33 (247)
434 1iow_A DD-ligase, DDLB, D-ALA\ 26.4 38 0.0013 31.7 3.2 39 56-99 2-43 (306)
435 3ors_A N5-carboxyaminoimidazol 26.4 2.7E+02 0.0091 23.7 8.0 32 431-463 58-89 (163)
436 1bg6_A N-(1-D-carboxylethyl)-L 26.3 45 0.0015 32.2 3.8 32 56-98 4-35 (359)
437 2hun_A 336AA long hypothetical 26.2 48 0.0017 31.4 4.0 33 56-98 3-37 (336)
438 2gas_A Isoflavone reductase; N 26.2 32 0.0011 32.2 2.6 25 72-99 11-35 (307)
439 3ai3_A NADPH-sorbose reductase 26.2 89 0.003 28.5 5.7 32 58-98 8-39 (263)
440 4e21_A 6-phosphogluconate dehy 26.2 46 0.0016 32.5 3.8 33 55-98 21-53 (358)
441 3gem_A Short chain dehydrogena 26.1 45 0.0015 30.7 3.6 33 58-99 28-60 (260)
442 3dfz_A SIRC, precorrin-2 dehyd 26.1 36 0.0012 30.8 2.8 35 54-99 29-63 (223)
443 3un1_A Probable oxidoreductase 25.9 61 0.0021 29.7 4.5 33 58-99 29-61 (260)
444 3hwr_A 2-dehydropantoate 2-red 25.9 45 0.0016 31.8 3.6 31 55-96 18-48 (318)
445 1uay_A Type II 3-hydroxyacyl-C 25.8 60 0.002 29.0 4.3 24 72-98 11-34 (242)
446 1zk4_A R-specific alcohol dehy 25.8 68 0.0023 28.9 4.7 24 72-98 15-38 (251)
447 1gsa_A Glutathione synthetase; 25.8 71 0.0024 29.9 5.0 40 57-99 2-41 (316)
448 2m1z_A LMO0427 protein; homolo 25.7 1.2E+02 0.004 23.9 5.3 40 56-100 2-43 (106)
449 3ohs_X Trans-1,2-dihydrobenzen 25.6 1.1E+02 0.0036 29.3 6.3 79 373-462 17-97 (334)
450 1iy8_A Levodione reductase; ox 25.5 77 0.0026 29.0 5.1 32 58-98 14-45 (267)
451 1uls_A Putative 3-oxoacyl-acyl 25.5 69 0.0024 28.9 4.7 32 58-98 6-37 (245)
452 2raf_A Putative dinucleotide-b 25.5 50 0.0017 29.2 3.6 34 54-98 17-50 (209)
453 3qiv_A Short-chain dehydrogena 25.4 82 0.0028 28.5 5.2 33 57-98 9-41 (253)
454 2qip_A Protein of unknown func 25.3 1.5E+02 0.005 25.0 6.5 67 366-437 90-158 (165)
455 2x6t_A ADP-L-glycero-D-manno-h 25.3 47 0.0016 32.0 3.7 35 55-99 45-80 (357)
456 3svt_A Short-chain type dehydr 25.3 78 0.0027 29.3 5.1 32 57-97 11-42 (281)
457 2hq1_A Glucose/ribitol dehydro 25.2 59 0.002 29.2 4.2 23 72-97 14-36 (247)
458 3igf_A ALL4481 protein; two-do 25.2 76 0.0026 31.2 5.1 35 57-98 2-38 (374)
459 4iin_A 3-ketoacyl-acyl carrier 25.2 72 0.0025 29.3 4.8 32 58-98 30-61 (271)
460 4dio_A NAD(P) transhydrogenase 25.0 1.9E+02 0.0063 28.7 7.9 50 423-472 267-322 (405)
461 2ekp_A 2-deoxy-D-gluconate 3-d 25.0 70 0.0024 28.7 4.6 32 58-98 3-34 (239)
462 1f0y_A HCDH, L-3-hydroxyacyl-C 25.0 58 0.002 30.7 4.2 32 56-98 15-46 (302)
463 1txg_A Glycerol-3-phosphate de 25.0 42 0.0014 32.1 3.2 31 57-98 1-31 (335)
464 2qpq_A Protein BUG27; alpha/be 25.0 3.5E+02 0.012 25.3 9.8 149 356-517 103-269 (301)
465 3eqz_A Response regulator; str 25.0 1.2E+02 0.004 23.6 5.6 113 385-505 4-126 (135)
466 3tsc_A Putative oxidoreductase 25.0 79 0.0027 29.2 5.1 32 58-98 12-43 (277)
467 3pef_A 6-phosphogluconate dehy 25.0 51 0.0017 30.8 3.8 31 57-98 2-32 (287)
468 1gee_A Glucose 1-dehydrogenase 24.9 55 0.0019 29.8 3.9 24 72-98 16-39 (261)
469 2pd4_A Enoyl-[acyl-carrier-pro 24.9 84 0.0029 28.9 5.3 33 58-99 7-41 (275)
470 2p91_A Enoyl-[acyl-carrier-pro 24.8 70 0.0024 29.7 4.7 32 58-98 22-55 (285)
471 1yb1_A 17-beta-hydroxysteroid 24.7 94 0.0032 28.5 5.6 32 58-98 32-63 (272)
472 1t2a_A GDP-mannose 4,6 dehydra 24.7 55 0.0019 31.7 4.1 25 72-99 33-57 (375)
473 3e48_A Putative nucleoside-dip 24.7 49 0.0017 30.7 3.5 57 370-429 174-233 (289)
474 3rd5_A Mypaa.01249.C; ssgcid, 24.6 72 0.0025 29.7 4.8 32 58-98 17-48 (291)
475 3t8y_A CHEB, chemotaxis respon 24.6 2.8E+02 0.0097 22.5 11.1 114 383-503 24-154 (164)
476 3gk3_A Acetoacetyl-COA reducta 24.6 55 0.0019 30.1 3.9 33 56-97 24-56 (269)
477 2c1x_A UDP-glucose flavonoid 3 24.6 38 0.0013 34.3 2.9 36 54-95 5-40 (456)
478 3uve_A Carveol dehydrogenase ( 24.4 85 0.0029 29.0 5.2 34 57-99 11-44 (286)
479 3s55_A Putative short-chain de 24.4 85 0.0029 29.0 5.2 32 58-98 11-42 (281)
480 1db3_A GDP-mannose 4,6-dehydra 24.4 53 0.0018 31.7 3.9 24 72-98 10-33 (372)
481 3eag_A UDP-N-acetylmuramate:L- 24.2 87 0.003 29.9 5.3 32 56-97 4-35 (326)
482 2nm0_A Probable 3-oxacyl-(acyl 24.1 78 0.0027 28.8 4.8 32 58-98 22-53 (253)
483 3tjr_A Short chain dehydrogena 24.1 98 0.0033 29.0 5.6 32 58-98 32-63 (301)
484 3ucx_A Short chain dehydrogena 24.1 98 0.0033 28.3 5.5 32 58-98 12-43 (264)
485 2wyu_A Enoyl-[acyl carrier pro 24.1 62 0.0021 29.6 4.1 32 58-98 9-42 (261)
486 2q1w_A Putative nucleotide sug 24.0 60 0.002 30.9 4.1 25 72-99 30-54 (333)
487 2jk1_A HUPR, hydrogenase trans 24.0 2.6E+02 0.0088 21.8 9.3 70 432-503 45-118 (139)
488 4eg0_A D-alanine--D-alanine li 24.0 65 0.0022 30.5 4.4 43 54-98 11-53 (317)
489 3c85_A Putative glutathione-re 24.0 51 0.0017 28.3 3.3 32 56-98 39-71 (183)
490 1p3y_1 MRSD protein; flavoprot 24.0 38 0.0013 29.9 2.4 37 56-99 8-44 (194)
491 2bll_A Protein YFBG; decarboxy 23.9 58 0.002 30.9 4.0 25 72-99 9-34 (345)
492 2xj4_A MIPZ; replication, cell 23.8 90 0.0031 29.0 5.3 36 57-98 4-41 (286)
493 1qyd_A Pinoresinol-lariciresin 23.8 39 0.0013 31.7 2.7 34 56-99 4-37 (313)
494 2fwm_X 2,3-dihydro-2,3-dihydro 23.8 78 0.0027 28.7 4.7 32 58-98 8-39 (250)
495 1spx_A Short-chain reductase f 23.8 72 0.0025 29.3 4.6 32 58-98 7-38 (278)
496 3l9w_A Glutathione-regulated p 23.7 46 0.0016 33.3 3.2 34 55-99 3-36 (413)
497 3svl_A Protein YIEF; E. coli C 23.7 24 0.00083 31.1 1.1 38 55-96 3-41 (193)
498 2bgk_A Rhizome secoisolaricire 23.7 97 0.0033 28.3 5.5 31 58-97 17-47 (278)
499 1yde_A Retinal dehydrogenase/r 23.6 96 0.0033 28.5 5.4 31 58-97 10-40 (270)
500 4dqx_A Probable oxidoreductase 23.6 95 0.0033 28.7 5.4 32 58-98 28-59 (277)
No 1
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=1.6e-75 Score=625.88 Aligned_cols=470 Identities=21% Similarity=0.323 Sum_probs=384.9
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEE
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKI 131 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 131 (540)
.++..||||||++|++|++++||+++++.+|+++|+++||+|+||+|.|+..... .+......+.+.++...+++
T Consensus 5 ~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 79 (536)
T 3vue_A 5 HHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDA-----WDTSVVAEIKVADRYERVRF 79 (536)
T ss_dssp ---CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTC-----EEEEEEEEEEETTEEEEEEE
T ss_pred cCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhh-----cccceEEEEEecCceEEEEE
Confidence 4577899999999999999999999999999999999999999999999876432 12223445667788888899
Q ss_pred EEEEEcCeeEEEEccCCCCCCCCC------CCCCC------CCChhHHHHHHHHHHHHHHHHcC-----------CCCCE
Q 009217 132 WIGVVSGIGVTFIQPLHYSSFFNR------ESVYG------YSDDFERFTYFSRASLDYIVKSR-----------KQPDV 188 (540)
Q Consensus 132 ~~~~~~gv~v~~i~~~~~~~~~~~------~~~y~------~~~~~~r~~~~~~~~~~~~~~~~-----------~~pDI 188 (540)
++...+|+++|+|+. +.||.+ ..+|+ |.|+..||.+|++++++.++.++ ..|||
T Consensus 80 ~~~~~~gv~~y~id~---~~~~~r~~~~~~~~~Y~~~~~~~~~d~~~rf~~f~~a~l~~~~~l~~~~~~~~~~~~~~ddI 156 (536)
T 3vue_A 80 FHCYKRGVDRVFIDH---PSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAALEAPRILNLNNNPYFKGTYGEDVV 156 (536)
T ss_dssp EECEETTEEEEEEEC---TTTTCC------------------CHHHHHHHHHHHHHHHHHHHCCCCCCTTCCSCCCSCEE
T ss_pred EEEEECCceEEEecC---hhhhccccccCCCcccCCCccCccchHHHHHHHHHHHHHHHHHHhccccchhhhccCCCCEE
Confidence 999999999999984 446654 23453 78899999999999999887643 34679
Q ss_pred EEEcCCchhhHHHHHHHHHhhcC-CCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCcc---ccCCCCCccchhhh
Q 009217 189 LHIHNWETAIVGPLFWDIFVKQG-LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDR---LQDNTKTHLVNILK 264 (540)
Q Consensus 189 IH~h~~~~~~~~~~~~~~~~~~~-~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~ 264 (540)
+|+|||+++++|.+++..+...+ +.++|+|+|+||+.++|.++...+..++++.......+. .........+|+++
T Consensus 157 iH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~k 236 (536)
T 3vue_A 157 FVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMK 236 (536)
T ss_dssp EEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEEEHHH
T ss_pred EEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccchhHHH
Confidence 99999999999999887654322 358999999999999999887777666665543211111 11111235689999
Q ss_pred HHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCccc-ccCcHHHHHHH
Q 009217 265 GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAED-MKGKTVCKVTL 343 (540)
Q Consensus 265 ~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~-~~~k~~~~~~l 343 (540)
.++.+||.|+|||+++++++... ++.|+......+..++.+|+||||++.|+|.+|..++.+|+..+ +++|..+|..+
T Consensus 237 ~~i~~ad~v~tVS~~~a~ei~~~-~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l 315 (536)
T 3vue_A 237 AGILEADRVLTVSPYYAEELISG-IARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEAL 315 (536)
T ss_dssp HHHHHCSEEEESCHHHHHHHHTT-CCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHH
T ss_pred HHHHhccEEEEcCHHHhhhhhcc-cccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHH
Confidence 99999999999999999998753 33333222233568999999999999999999999999998766 67899999999
Q ss_pred HHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChH
Q 009217 344 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDA 423 (540)
Q Consensus 344 r~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~ 423 (540)
++++|++.+++.|+|+|+||+.++||++.|++|++++.+.+.+|+|+|.|+ +.....++.++..++ ++|.|.+.++++
T Consensus 316 ~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~-~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 393 (536)
T 3vue_A 316 QAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGK-KKFEKLLKSMEEKYP-GKVRAVVKFNAP 393 (536)
T ss_dssp HHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBC-HHHHHHHHHHHHHST-TTEEEECSCCHH
T ss_pred HHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccC-chHHHHHHHHHhhcC-CceEEEEeccHH
Confidence 999999988889999999999999999999999999988899999999775 556777888888875 799999999999
Q ss_pred HHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCcccc-------ceeecCCCCHHHHHH
Q 009217 424 LLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRF-------SRFISSTFGNISLSQ 496 (540)
Q Consensus 424 ~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~-------~G~l~~~~d~~~la~ 496 (540)
+.+.+|++||+||+||++||||++++|||+||+|||+|++ ||++|+|.++. +|. +|+++++.|+++|++
T Consensus 394 ~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~--gG~~e~V~dg~--~G~~~~~~~~~g~l~~~~d~~~la~ 469 (536)
T 3vue_A 394 LAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACAST--GGLVDTVIEGK--TGFHMGRLSVDCKVVEPSDVKKVAA 469 (536)
T ss_dssp HHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSC--THHHHHCCBTT--TEEECCCCCSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCC--CCchheeeCCC--CccccccCCCceeEECCCCHHHHHH
Confidence 9999999999999999999999999999999999999999 99999998532 221 234788889999999
Q ss_pred HHHHHhc--CHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Q 009217 497 ALEEIKN--NPLSWKRKIKDAMLQDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 497 ai~~l~~--~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~l 537 (540)
+|.++++ +.+.|+++++++++++|||+++|++ |+++|+++
T Consensus 470 ai~ral~~~~~~~~~~~~~~am~~~fSW~~~A~~-y~~ly~~L 511 (536)
T 3vue_A 470 TLKRAIKVVGTPAYEEMVRNCMNQDLSWKGPAKN-WENVLLGL 511 (536)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHSCCSSHHHHHH-HHHHHHTT
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHh
Confidence 9987664 4456889999999999999999999 69999987
No 2
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=3.9e-56 Score=473.57 Aligned_cols=461 Identities=20% Similarity=0.313 Sum_probs=350.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
||||+|+.+++|....||++.++.+|+++|+++||+|+|+++.++..... ......+ ..+.+++++ ..++.....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~-~~~~~~~-~~~~~~~~~---~~~~~~~~~ 75 (485)
T 1rzu_A 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAA-VTDPVKC-FEFTDLLGE---KADLLEVQH 75 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHHH-CCSCEEE-EEESCSSSC---CEEEEEEEE
T ss_pred CeEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccccccccc-cccccee-EEEEEecCC---eEEEEEEEe
Confidence 89999999999965579999999999999999999999999876432110 0001000 011111111 112333346
Q ss_pred cCeeEEEEccCCCCCCCCCC-CCC------CCCChhHHHHHHHHHHHHHHHHc--CCCCCEEEEcCCchhhHHHHHHHHH
Q 009217 137 SGIGVTFIQPLHYSSFFNRE-SVY------GYSDDFERFTYFSRASLDYIVKS--RKQPDVLHIHNWETAIVGPLFWDIF 207 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~-~~y------~~~~~~~r~~~~~~~~~~~~~~~--~~~pDIIH~h~~~~~~~~~~~~~~~ 207 (540)
+|+++++++. +.++.+. .+| +|.++..++.+|++.+.++++.+ ..+|||||+|+|.+++++.+++..
T Consensus 76 ~gv~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiIh~~~~~~~~~~~~~~~~- 151 (485)
T 1rzu_A 76 ERLDLLILDA---PAYYERSGGPYLGQTGKDYPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYA- 151 (485)
T ss_dssp TTEEEEEEEC---HHHHCSSSCSSBCTTSSBCTTHHHHHHHHHHHHHHHHTTCSSSCCCSEEEEEHHHHTTHHHHHHHS-
T ss_pred cCceEEEEeC---hHHhCCCccccCCcccccccchHHHHHHHHHHHHHHHHHhccCCCCCEEEecccchhHHHHHHhhc-
Confidence 8999998862 1122222 123 24566677878888887777654 578999999998877776655431
Q ss_pred hhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhc
Q 009217 208 VKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR 287 (540)
Q Consensus 208 ~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~ 287 (540)
+..++|+|+|+|+..+++.++...+..++++...+. .+....+ ....+++..++.+|.|+++|+..++.+...
T Consensus 152 ---~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 224 (485)
T 1rzu_A 152 ---ETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFG-MEGIEYY---NDVSFLKGGLQTATALSTVSPSYAEEILTA 224 (485)
T ss_dssp ---SSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSS-TTTTEET---TEEEHHHHHHHHCSEEEESCHHHHHHTTSH
T ss_pred ---ccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcc-ccccccc---ccccHHHHHHhhcCEEEecCHhHHHHHhcc
Confidence 126899999999987665554444444454433221 1111111 123577888999999999999988876542
Q ss_pred ccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccccc
Q 009217 288 SLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSD 367 (540)
Q Consensus 288 ~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~ 367 (540)
.+|.|+...+..+..++.+||||+|.+.|.|..+..++.+|..+++.++..++..+++++|++.++ .++++|+||+.++
T Consensus 225 ~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~i~~vGrl~~~ 303 (485)
T 1rzu_A 225 EFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRIDDDG-SPLFCVISRLTWQ 303 (485)
T ss_dssp HHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTCCCSS-SCEEEEESCBSTT
T ss_pred ccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCCCCCC-CeEEEEEccCccc
Confidence 245555555555678999999999999999987777778888888889998999999999998642 3689999999999
Q ss_pred CCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchH
Q 009217 368 VFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQV 447 (540)
Q Consensus 368 KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv 447 (540)
||++.|++|+..+.+.+++|+|+|+|+ +.+.+.+++++++++ ++|+++.+++++++..+|++||++|+||.+|+||++
T Consensus 304 Kg~~~li~a~~~l~~~~~~l~ivG~g~-~~~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~~~~ 381 (485)
T 1rzu_A 304 KGIDLMAEAVDEIVSLGGRLVVLGAGD-VALEGALLAAASRHH-GRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLT 381 (485)
T ss_dssp TTHHHHHTTHHHHHHTTCEEEEEECBC-HHHHHHHHHHHHHTT-TTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSH
T ss_pred cCHHHHHHHHHHHHhcCceEEEEeCCc-hHHHHHHHHHHHhCC-CcEEEecCCCHHHHHHHHhcCCEEEECcccCCCCHH
Confidence 999999999999987799999999874 346788999999886 789866677888888999999999999999999999
Q ss_pred HHHHHhcCCceEEEecCCCccccceeccC----CccccceeecCCCCHHHHHHHHHHHh---cCHHHHHHHHHHHHhccC
Q 009217 448 PLKALKYGAAPIAVTSSDIEFRHFAEFDH----ESTRFSRFISSTFGNISLSQALEEIK---NNPLSWKRKIKDAMLQDF 520 (540)
Q Consensus 448 ~lEAma~G~pvI~~~~~~gg~~e~v~~~~----~~~g~~G~l~~~~d~~~la~ai~~l~---~~~~~~~~~~~~a~~~~f 520 (540)
++|||+||+|||+++. ||++|++.++. ...+.+|+++++.|+++|+++|..++ +|++.++++++++++++|
T Consensus 382 ~lEAma~G~PvI~s~~--gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~f 459 (485)
T 1rzu_A 382 QLYALRYGCIPVVART--GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKLGMKSDV 459 (485)
T ss_dssp HHHHHHHTCEEEEESS--HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHCCCCEEEeCC--CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999998 99999997420 00015679999999999999999999 899999999999988999
Q ss_pred ChHHHHHHHHHHHHHHHhc
Q 009217 521 SWDADCNDIHISAYTAIKN 539 (540)
Q Consensus 521 sw~~~a~~~y~~lY~~l~~ 539 (540)
||+.++++ |+++|+++.+
T Consensus 460 s~~~~~~~-~~~~y~~~~~ 477 (485)
T 1rzu_A 460 SWEKSAGL-YAALYSQLIS 477 (485)
T ss_dssp BHHHHHHH-HHHHHHHHTC
T ss_pred ChHHHHHH-HHHHHHHhhC
Confidence 99999999 5999998854
No 3
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=6.5e-56 Score=471.82 Aligned_cols=459 Identities=23% Similarity=0.360 Sum_probs=344.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++|+.+|+|....||++.++.+|+++|+++||+|+|+++.++...... .....+ ..+. .+++ ...+.....
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~~~~~~~~-~~~~~~-~~~~-~~~~---~~~~~~~~~ 74 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGV-TDAQVV-SRRD-TFAG---HITLLFGHY 74 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHHC-TTCEEE-EEEC-CTTC---CEEEEEEEE
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCcccccccc-ccceeE-EEec-ccCC---cEEEEEEEE
Confidence 899999999999756799999999999999999999999998754221110 000000 0000 0111 012222335
Q ss_pred cCeeEEEEccCCCCCCCCCCC-CC------CCCChhHHHHHHHHHHHHHHHHcC--CCCCEEEEcCCchhhHHHHHHHHH
Q 009217 137 SGIGVTFIQPLHYSSFFNRES-VY------GYSDDFERFTYFSRASLDYIVKSR--KQPDVLHIHNWETAIVGPLFWDIF 207 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~-~y------~~~~~~~r~~~~~~~~~~~~~~~~--~~pDIIH~h~~~~~~~~~~~~~~~ 207 (540)
+|+++++++. +.++.+.. +| +|.++..++.++...+.++++.+. .+|||||+|+|.+++++.+++.
T Consensus 75 ~gv~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~~~~~~~-- 149 (485)
T 2qzs_A 75 NGVGIYLIDA---PHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAA-- 149 (485)
T ss_dssp TTEEEEEEEC---HHHHCCSSCSSBCTTSCBCTTHHHHHHHHHHHHHHHTTTSSTTCCCSEEEEETGGGTTHHHHHHH--
T ss_pred CCcEEEEEeC---hhhccCCCCccCCcccCCCCchHHHHHHHHHHHHHHHHHhccCCCCCEEEeeccchhHHHHHHhh--
Confidence 8999998862 11222222 22 245666677777777777666533 6899999999887777655531
Q ss_pred hhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhc
Q 009217 208 VKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIR 287 (540)
Q Consensus 208 ~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~ 287 (540)
+..++|+|+|+|+..+++.++...+..++++...+. ....+.+ ....+++..++.+|.|+++|+..++.+...
T Consensus 150 ---~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 222 (485)
T 2qzs_A 150 ---RGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFN-IHGLEFN---GQISFLKAGLYYADHITAVSPTYAREITEP 222 (485)
T ss_dssp ---TTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCS-TTTTEET---TEEEHHHHHHHHCSEEEESSHHHHHHTTSH
T ss_pred ---ccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcc-ccccccc---ccccHHHHHHHhcCeEEecCHHHHHHHhcc
Confidence 136899999999987655444433444444433211 1111111 124577888999999999999988876542
Q ss_pred ccCCCchHHhhhcc--CceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc
Q 009217 288 SLSHGLESTLAIHQ--DKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV 365 (540)
Q Consensus 288 ~~~~gl~~~l~~~~--~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~ 365 (540)
.+|.+++..+..+. .++.+||||+|.+.|.|..+..+..+|+.+++.++..++..+++++|++.+++.++++|+||+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~vGrl~ 302 (485)
T 2qzs_A 223 QFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLT 302 (485)
T ss_dssp HHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHHTCCCCTTSCEEEEEEEES
T ss_pred ccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHcCCCCCCCCeEEEEeccCc
Confidence 23433333333334 7999999999999999987777778888888888888999999999998644568999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCc
Q 009217 366 SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLL 445 (540)
Q Consensus 366 ~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fg 445 (540)
++||++.|++|++.+.+.+++|+|+|+|+ +.+.+.+++++++++ ++|.++.+++++++..+|++||++|+||.+|+||
T Consensus 303 ~~Kg~~~li~a~~~l~~~~~~l~ivG~g~-~~~~~~l~~~~~~~~-~~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g 380 (485)
T 2qzs_A 303 SQKGLDLVLEALPGLLEQGGQLALLGAGD-PVLQEGFLAAAAEYP-GQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCG 380 (485)
T ss_dssp GGGCHHHHHHHHHHHHHTTCEEEEEEEEC-HHHHHHHHHHHHHST-TTEEEEESCCHHHHHHHHHHCSEEEECCSCCSSC
T ss_pred cccCHHHHHHHHHHHhhCCcEEEEEeCCc-hHHHHHHHHHHHhCC-CcEEEeCCCCHHHHHHHHHhCCEEEECCccCCCc
Confidence 99999999999999987799999999875 346788999998886 7898666778888889999999999999999999
Q ss_pred hHHHHHHhcCCceEEEecCCCccccceeccCC----ccccceeecCCCCHHHHHHHHHHHh---cCHHHHHHHHHHHHhc
Q 009217 446 QVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE----STRFSRFISSTFGNISLSQALEEIK---NNPLSWKRKIKDAMLQ 518 (540)
Q Consensus 446 lv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~----~~g~~G~l~~~~d~~~la~ai~~l~---~~~~~~~~~~~~a~~~ 518 (540)
++++|||+||+|||++++ ||++|++.++.. ..+.+|+++++.|+++|+++|..++ +|++.+++++++++++
T Consensus 381 ~~~lEAma~G~PvI~s~~--gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~ 458 (485)
T 2qzs_A 381 LTQLYGLKYGTLPLVRRT--GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQAMAM 458 (485)
T ss_dssp SHHHHHHHHTCEEEEESS--HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCEEECCC--CCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999998 999999974200 0015689999999999999999999 7999999999999889
Q ss_pred cCChHHHHHHHHHHHHHHHh
Q 009217 519 DFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 519 ~fsw~~~a~~~y~~lY~~l~ 538 (540)
+|||+.++++ |+++|+++.
T Consensus 459 ~fs~~~~~~~-~~~ly~~~~ 477 (485)
T 2qzs_A 459 DFSWQVAAKS-YRELYYRLK 477 (485)
T ss_dssp CCCHHHHHHH-HHHHHHHHC
T ss_pred cCCHHHHHHH-HHHHHHHhh
Confidence 9999999999 699999874
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=5.1e-52 Score=434.85 Aligned_cols=418 Identities=20% Similarity=0.264 Sum_probs=331.1
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
++||||+|+.+++| ...||++.++.+|+++|+++||+|+|++|.++....... ..+.+ + +.....+++..
T Consensus 1 r~MkIl~v~~~~~p-~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~-~-~~~~~~~~~~~ 70 (439)
T 3fro_A 1 RHMKVLLLGFEFLP-VKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEI-------GKIRV-F-GEEVQVKVSYE 70 (439)
T ss_dssp CCCEEEEECSCCTT-SCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEE-------EEEEE-T-TEEEEEEEEEE
T ss_pred CceEEEEEecccCC-cccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhh-------ccccc-c-Ccccceeeeec
Confidence 47999999999988 567999999999999999999999999998775443210 11222 2 23445566666
Q ss_pred EEcCeeEEEEccCCCCCCCCCCCCCC-CCCh-hHHHHHHHHHHHHHHHHc---CCCCCEEEEcCCchhhHHHHHHHHHhh
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRESVYG-YSDD-FERFTYFSRASLDYIVKS---RKQPDVLHIHNWETAIVGPLFWDIFVK 209 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~~y~-~~~~-~~r~~~~~~~~~~~~~~~---~~~pDIIH~h~~~~~~~~~~~~~~~~~ 209 (540)
..+|+++++++. .++.+...|+ +.++ ..++..|.+.+.+++++. ..+|||||+|+|.+++++.+++.
T Consensus 71 ~~~gv~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~---- 142 (439)
T 3fro_A 71 ERGNLRIYRIGG----GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKK---- 142 (439)
T ss_dssp EETTEEEEEEES----GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHH----
T ss_pred cCCCceEEEecc----hhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhh----
Confidence 789999999973 3666666666 5666 677888888888888876 67999999999888777666653
Q ss_pred cCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhccc
Q 009217 210 QGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSL 289 (540)
Q Consensus 210 ~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~ 289 (540)
..++|+|+|+|+....+. +...+...++.. ...+ ....+.+..++.+|.|+++|+.+++....
T Consensus 143 --~~~~~~v~~~h~~~~~~~-~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~ad~ii~~S~~~~~~~~~--- 205 (439)
T 3fro_A 143 --YFKIPAVFTIHRLNKSKL-PAFYFHEAGLSE--------LAPY---PDIDPEHTGGYIADIVTTVSRGYLIDEWG--- 205 (439)
T ss_dssp --HHCCCEEEEESCCCCCCE-EHHHHHHTTCGG--------GCCS---SEECHHHHHHHHCSEEEESCHHHHHHTHH---
T ss_pred --ccCCCEEEEecccccccC-chHHhCcccccc--------cccc---ceeeHhhhhhhhccEEEecCHHHHHHHhh---
Confidence 268899999998764321 111111111110 0011 22467788899999999999988776221
Q ss_pred CCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc-ccC
Q 009217 290 SHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV-SDV 368 (540)
Q Consensus 290 ~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~-~~K 368 (540)
.+..+..++.+||||+|.+.|.|...+ ..+...+..+++++|++. + ++++|+||+. ++|
T Consensus 206 ------~~~~~~~~i~vi~ngvd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~--~-~~i~~~G~~~~~~K 265 (439)
T 3fro_A 206 ------FFRNFEGKITYVFNGIDCSFWNESYLT-----------GSRDERKKSLLSKFGMDE--G-VTFMFIGRFDRGQK 265 (439)
T ss_dssp ------HHGGGTTSEEECCCCCCTTTSCGGGSC-----------SCHHHHHHHHHHHHTCCS--C-EEEEEECCSSCTTB
T ss_pred ------hhhhcCCceeecCCCCCchhcCccccc-----------chhhhhHHHHHHHcCCCC--C-cEEEEEcccccccc
Confidence 233367899999999999998875210 124557888999999964 3 8999999999 999
Q ss_pred CHHHHHHHHHHHHh----cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCC
Q 009217 369 FLENLKAVVRGAKM----RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPL 444 (540)
Q Consensus 369 G~~~Li~A~~~l~~----~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~f 444 (540)
|++.+++|++.+.+ .+++|+|+|+|+ ..+.+.+++++++++ +++.|.|.++.+++..+|++||++|+||.+|+|
T Consensus 266 g~~~li~a~~~l~~~~~~~~~~l~i~G~g~-~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~ 343 (439)
T 3fro_A 266 GVDVLLKAIEILSSKKEFQEMRFIIIGKGD-PELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPF 343 (439)
T ss_dssp CHHHHHHHHHHHHTSGGGGGEEEEEECCCC-HHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSS
T ss_pred cHHHHHHHHHHHHhcccCCCeEEEEEcCCC-hhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCc
Confidence 99999999999986 689999999775 455688999999987 666666668899999999999999999999999
Q ss_pred chHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh--ccCC
Q 009217 445 LQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML--QDFS 521 (540)
Q Consensus 445 glv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~-~~~~~~~~~~~a~~--~~fs 521 (540)
|++++|||+||+|||+++. ||++|++.+ | +|+++++.|+++++++|..+++ |++.++++++++++ ++||
T Consensus 344 ~~~~~EAma~G~Pvi~s~~--~~~~e~~~~-----~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s 415 (439)
T 3fro_A 344 GLVALEAMCLGAIPIASAV--GGLRDIITN-----E-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 415 (439)
T ss_dssp CHHHHHHHHTTCEEEEESS--THHHHHCCT-----T-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSC
T ss_pred cHHHHHHHHCCCCeEEcCC--CCcceeEEc-----C-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999998 999999973 4 5799999999999999999999 99999999999877 7899
Q ss_pred hHHHHHHHHHHHHHHHh
Q 009217 522 WDADCNDIHISAYTAIK 538 (540)
Q Consensus 522 w~~~a~~~y~~lY~~l~ 538 (540)
|+.++++ |.++|+++.
T Consensus 416 ~~~~~~~-~~~~~~~~~ 431 (439)
T 3fro_A 416 WEKSAER-YVKAYTGSI 431 (439)
T ss_dssp HHHHHHH-HHHHHHTCS
T ss_pred HHHHHHH-HHHHHHHHH
Confidence 9999999 599999874
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=2.8e-46 Score=399.10 Aligned_cols=416 Identities=13% Similarity=0.129 Sum_probs=289.8
Q ss_pred CCceEEEEEecccccc---------ccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCc-cccccCcceeeeeeeeecCC
Q 009217 55 NGFHIIHICTEMDPLV---------SIGSLASYVTGLSGALQRKGHLVEVILPKYACMN-LDGVQGLREIKAECYSYFNG 124 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~---------~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~-~~~~~~l~~~~~~~~~~~~~ 124 (540)
++|||++|+..++|.. ..||++.++.+|+++|+++||+|+|+++...... ......+..+ .
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~-------~-- 76 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYY-------Q-- 76 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEEC-------T--
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhc-------c--
Confidence 4699999999888842 4699999999999999999999999998643211 1100000000 0
Q ss_pred eeeeeEEEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHH
Q 009217 125 QLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFW 204 (540)
Q Consensus 125 ~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~ 204 (540)
..+|++++.++... ..++.+...+ ..+..+...+.+++++...+|||||+|.+.+++++.++.
T Consensus 77 ----------~~~gv~v~~~~~~~-~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~ 139 (499)
T 2r60_A 77 ----------ETNKVRIVRIPFGG-DKFLPKEELW------PYLHEYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLK 139 (499)
T ss_dssp ----------TCSSEEEEEECCSC-SSCCCGGGCG------GGHHHHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHH
T ss_pred ----------CCCCeEEEEecCCC-cCCcCHHHHH------HHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHH
Confidence 02578888775211 0111111111 111222344555665544589999999866655544443
Q ss_pred HHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhh
Q 009217 205 DIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGR 284 (540)
Q Consensus 205 ~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~ 284 (540)
. ..++|+|+|+|+...... ..+...+.....+ ...+.......+.+..++.+|.|+++|+..++.+
T Consensus 140 ~------~~~~p~v~~~H~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~ 205 (499)
T 2r60_A 140 N------IKGLPFTFTGHSLGAQKM---EKLNVNTSNFKEM-----DERFKFHRRIIAERLTMSYADKIIVSTSQERFGQ 205 (499)
T ss_dssp H------HHCCCEEEECSSCHHHHH---HTTCCCSTTSHHH-----HHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHT
T ss_pred H------hcCCcEEEEccCcccccc---hhhccCCCCcchh-----hhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHH
Confidence 3 257899999998532100 0000000000000 0000000011234667889999999999888765
Q ss_pred hhcc-cCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhC-----CCCCCCceEE
Q 009217 285 IIRS-LSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLG-----LSKDASTIVV 358 (540)
Q Consensus 285 ~~~~-~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~g-----l~~~~~~~lv 358 (540)
.... +|. +.+ ..+..++.+||||+|.+.|.|.. +...+..+|+++| ++.+ .+++
T Consensus 206 ~~~~~~g~-~~~--~~~~~ki~vi~ngvd~~~~~~~~---------------~~~~~~~~r~~~~~~~~~~~~~--~~~i 265 (499)
T 2r60_A 206 YSHDLYRG-AVN--VEDDDKFSVIPPGVNTRVFDGEY---------------GDKIKAKITKYLERDLGSERME--LPAI 265 (499)
T ss_dssp TTSGGGTT-TCC--TTCGGGEEECCCCBCTTTSSSCC---------------CHHHHHHHHHHHHHHSCGGGTT--SCEE
T ss_pred Hhhhcccc-ccc--ccCCCCeEEECCCcChhhcCccc---------------hhhhHHHHHHHhcccccccCCC--CcEE
Confidence 4310 110 000 00246899999999998887652 1224567888888 6543 4789
Q ss_pred EEEecccccCCHHHHHHHHHHHHhc---CcEEEEEecCCCh------------hHHHHHHHHHHHhCC-CcEEEEEecCh
Q 009217 359 GCIFSDVSDVFLENLKAVVRGAKMR---GIQFVFTGTNKLP------------SASRALVSFQEELKD-GIVIFVDSYDD 422 (540)
Q Consensus 359 ~~vgrl~~~KG~~~Li~A~~~l~~~---~~~lvi~G~g~~~------------~~~~~l~~l~~~~~~-~~v~f~~~~~~ 422 (540)
+|+||+.++||++.|++|+..+.+. ..+|+|+|+++.+ .+.+.+++++++++. ++|+|+|.++.
T Consensus 266 ~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~ 345 (499)
T 2r60_A 266 IASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQ 345 (499)
T ss_dssp EECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSH
T ss_pred EEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCH
Confidence 9999999999999999999988752 4689999972211 126788888988875 78999999988
Q ss_pred HHHHHHHhcC----CEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHH
Q 009217 423 ALLHLIFSGS----DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQAL 498 (540)
Q Consensus 423 ~~~~~~~~~a----Di~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai 498 (540)
+++..+|++| |++|+||.+|+||++++|||+||+|||+++. ||++|++.+ |.+|+++++.|+++|+++|
T Consensus 346 ~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~--~g~~e~v~~-----~~~g~l~~~~d~~~la~~i 418 (499)
T 2r60_A 346 QELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRN--GGPAEILDG-----GKYGVLVDPEDPEDIARGL 418 (499)
T ss_dssp HHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESS--BHHHHHTGG-----GTSSEEECTTCHHHHHHHH
T ss_pred HHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecC--CCHHHHhcC-----CceEEEeCCCCHHHHHHHH
Confidence 8899999999 9999999999999999999999999999998 999999973 5567999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHHHHh
Q 009217 499 EEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 499 ~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~lY~~l~ 538 (540)
..+++|++.++++++++++ ++|||+.++++ |.++|+++.
T Consensus 419 ~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~-~~~~y~~~~ 460 (499)
T 2r60_A 419 LKAFESEETWSAYQEKGKQRVEERYTWQETARG-YLEVIQEIA 460 (499)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHH-HHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHH
Confidence 9999999999999988865 56999999999 599999874
No 6
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=2.8e-45 Score=384.43 Aligned_cols=397 Identities=17% Similarity=0.198 Sum_probs=283.1
Q ss_pred CCCCCceEEEEEecccccc-----ccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCee
Q 009217 52 SKKNGFHIIHICTEMDPLV-----SIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQL 126 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~-----~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (540)
...++||||+|+.+|+|.. ..||++.++.+|+++|+++||+|+|+++........ .
T Consensus 16 ~~~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~----~--------------- 76 (438)
T 3c48_A 16 PRGSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE----I--------------- 76 (438)
T ss_dssp ---CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS----E---------------
T ss_pred cCcchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc----c---------------
Confidence 3456799999999888852 369999999999999999999999999864321100 0
Q ss_pred eeeEEEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH-HHHcCCCCCEEEEcCCchhhHHHHHHH
Q 009217 127 HANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDY-IVKSRKQPDVLHIHNWETAIVGPLFWD 205 (540)
Q Consensus 127 ~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~-~~~~~~~pDIIH~h~~~~~~~~~~~~~ 205 (540)
....+|++++.+.... +.. ....+....+..|.+.+++. +++. .+|||||+|.|.+++++.++..
T Consensus 77 ------~~~~~~v~v~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~ 142 (438)
T 3c48_A 77 ------VRVAENLRVINIAAGP---YEG----LSKEELPTQLAAFTGGMLSFTRREK-VTYDLIHSHYWLSGQVGWLLRD 142 (438)
T ss_dssp ------EEEETTEEEEEECCSC---SSS----CCGGGGGGGHHHHHHHHHHHHHHHT-CCCSEEEEEHHHHHHHHHHHHH
T ss_pred ------ccccCCeEEEEecCCC---ccc----cchhHHHHHHHHHHHHHHHHHHhcc-CCCCEEEeCCccHHHHHHHHHH
Confidence 0124688888775211 100 00001111122333444444 4432 3499999998766655444433
Q ss_pred HHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhh
Q 009217 206 IFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRI 285 (540)
Q Consensus 206 ~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~ 285 (540)
..++|+|+|+|+...... ..+... ...... ....+.+..++.+|.|+++|+..++.+.
T Consensus 143 ------~~~~p~v~~~h~~~~~~~--------~~~~~~-----~~~~~~---~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 200 (438)
T 3c48_A 143 ------LWRIPLIHTAHTLAAVKN--------SYRDDS-----DTPESE---ARRICEQQLVDNADVLAVNTQEEMQDLM 200 (438)
T ss_dssp ------HHTCCEEEECSSCHHHHS--------CC---------CCHHHH---HHHHHHHHHHHHCSEEEESSHHHHHHHH
T ss_pred ------HcCCCEEEEecCCccccc--------cccccc-----CCcchH---HHHHHHHHHHhcCCEEEEcCHHHHHHHH
Confidence 257899999998531000 000000 000000 0112445678899999999998887664
Q ss_pred hcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc
Q 009217 286 IRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV 365 (540)
Q Consensus 286 ~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~ 365 (540)
. .+| .+..++.+||||+|.+.|.|... ..+..+++++|++.+ .++++|+||+.
T Consensus 201 ~-~~g--------~~~~k~~vi~ngvd~~~~~~~~~----------------~~~~~~r~~~~~~~~--~~~i~~~G~~~ 253 (438)
T 3c48_A 201 H-HYD--------ADPDRISVVSPGADVELYSPGND----------------RATERSRRELGIPLH--TKVVAFVGRLQ 253 (438)
T ss_dssp H-HHC--------CCGGGEEECCCCCCTTTSCCC--------------------CHHHHHHTTCCSS--SEEEEEESCBS
T ss_pred H-HhC--------CChhheEEecCCccccccCCccc----------------chhhhhHHhcCCCCC--CcEEEEEeeec
Confidence 3 122 24678999999999988876521 123347888888643 58899999999
Q ss_pred ccCCHHHHHHHHHHHHhc----CcEEEEEecCCC-hhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECC
Q 009217 366 SDVFLENLKAVVRGAKMR----GIQFVFTGTNKL-PSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHS 439 (540)
Q Consensus 366 ~~KG~~~Li~A~~~l~~~----~~~lvi~G~g~~-~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS 439 (540)
++||++.+++|+..+.+. +++|+|+|.... ....+.+++++++++. ++|.|+|..+.+++..+|+.||++|+||
T Consensus 254 ~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps 333 (438)
T 3c48_A 254 PFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPS 333 (438)
T ss_dssp GGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECC
T ss_pred ccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECc
Confidence 999999999999998753 799999996110 1245678888888764 7999999998888899999999999999
Q ss_pred CCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Q 009217 440 FHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML-- 517 (540)
Q Consensus 440 ~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~-- 517 (540)
.+|+||++++|||+||+|||+++. ||++|++.+ |.+|+++++.|+++|+++|.++++|++.++++++++++
T Consensus 334 ~~e~~~~~~~Eama~G~PvI~~~~--~~~~e~i~~-----~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 406 (438)
T 3c48_A 334 FNESFGLVAMEAQASGTPVIAARV--GGLPIAVAE-----GETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHA 406 (438)
T ss_dssp SCCSSCHHHHHHHHTTCCEEEESC--TTHHHHSCB-----TTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred cccCCchHHHHHHHcCCCEEecCC--CChhHHhhC-----CCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 999999973 55679999999999999999999999999999988865
Q ss_pred ccCChHHHHHHHHHHHHHHHh
Q 009217 518 QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 518 ~~fsw~~~a~~~y~~lY~~l~ 538 (540)
+.|||+.++++ |.++|+++.
T Consensus 407 ~~~s~~~~~~~-~~~~~~~~~ 426 (438)
T 3c48_A 407 RTFSWAATAAQ-LSSLYNDAI 426 (438)
T ss_dssp HHHHHHHHHHH-HHHHHHHHH
T ss_pred HhCCHHHHHHH-HHHHHHHHh
Confidence 44999999999 599999875
No 7
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=6.5e-47 Score=417.34 Aligned_cols=451 Identities=12% Similarity=0.114 Sum_probs=297.2
Q ss_pred HhhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccc---------cccccccHHHHHhH--------HHHHHHHcCC
Q 009217 29 LFADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMD---------PLVSIGSLASYVTG--------LSGALQRKGH 91 (540)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~---------P~~~~GG~~~~v~~--------L~~~L~~~Gh 91 (540)
...++.+..|.. +|.+|+...+ +.|+|++|+.+.+ | .+||..+||.+ |+++|+++||
T Consensus 255 ~~~~~~~~p~~~---~~~~~~~~~~-~~~~i~~is~hg~~~~~~~lG~~--dtGGq~vyV~e~~~al~~ela~~L~~~G~ 328 (816)
T 3s28_A 255 LLLDLLEAPDPC---TLETFLGRVP-MVFNVVILSPHGYFAQDNVLGYP--DTGGQVVYILDQVRALEIEMLQRIKQQGL 328 (816)
T ss_dssp HHHHHHHSCCHH---HHHHHHHHSC-CCCEEEEECCSSCCCSSSCTTST--TCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCcc---cHHHHhccCC-ceeEEEEEcCCcccCccccCCCC--CCCCceeeHHHHHHHHHHHHHHHHHHCCC
Confidence 344555666666 4444443222 3599999999877 6 57999999995 6777788999
Q ss_pred eEE----EEeecCCCCccc-cccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEccCCC----CCCCCCCCCCCCC
Q 009217 92 LVE----VILPKYACMNLD-GVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQPLHY----SSFFNRESVYGYS 162 (540)
Q Consensus 92 ~V~----vi~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~~~~~----~~~~~~~~~y~~~ 162 (540)
+|+ |+|...+..... +......+ . ..+|+.+++++.... ..++.+..++.+.
T Consensus 329 ~V~~~V~v~Tr~~~~~~g~~y~~~~e~i--------~-----------~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L 389 (816)
T 3s28_A 329 NIKPRILILTRLLPDAVGTTCGERLERV--------Y-----------DSEYCDILRVPFRTEKGIVRKWISRFEVWPYL 389 (816)
T ss_dssp CCCCEEEEEEECCTTCTTSSTTSSEEEC--------T-----------TCSSEEEEEECEEETTEEECSCCCTTTCGGGH
T ss_pred ccceeeEEEeCCCCCCCCCccCCcceee--------c-----------CcCCeEEEEecCCCccccccccccHHHHHHHH
Confidence 887 888765432110 00000000 0 024788888852110 1233443333322
Q ss_pred ChhHHHHHHH-HHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCC
Q 009217 163 DDFERFTYFS-RASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLD 241 (540)
Q Consensus 163 ~~~~r~~~~~-~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~ 241 (540)
..|. ..+...++..+.+|||||+|.|.+++++.+++.. .++|+|+|.|++...... ..+..
T Consensus 390 ------~~F~~~~l~~il~~~~~~PDVIHsH~~~sglva~llar~------~gvP~V~T~Hsl~~~k~~------~~~~~ 451 (816)
T 3s28_A 390 ------ETYTEDAAVELSKELNGKPDLIIGNYSDGNLVASLLAHK------LGVTQCTIAHALEKTKYP------DSDIY 451 (816)
T ss_dssp ------HHHHHHHHHHHHHHCSSCCSEEEEEHHHHHHHHHHHHHH------HTCCEEEECSCCHHHHST------TTTTT
T ss_pred ------HHHHHHHHHHHHHhcCCCCeEEEeCCchHHHHHHHHHHH------cCCCEEEEEecccccccc------cccch
Confidence 2233 3444455555668999999998888887766552 689999999986321100 00110
Q ss_pred ccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcc--cC----CCchHHh------hhccCceEEecc
Q 009217 242 PARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS--LS----HGLESTL------AIHQDKLLVAPC 309 (540)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~--~~----~gl~~~l------~~~~~ki~vI~n 309 (540)
+..+ ...|.....+...+.+++.||.|+++|+..++++.... ++ .++...+ .....|+.+|||
T Consensus 452 ~~~~-----~~~y~~~~r~~aE~~~l~~AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpn 526 (816)
T 3s28_A 452 WKKL-----DDKYHFSCQFTADIFAMNHTDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSP 526 (816)
T ss_dssp HHHH-----HHHHCHHHHHHHHHHHHHHSSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCC
T ss_pred hhhH-----HHHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECC
Confidence 0000 00000000112344578999999999998876532210 10 0000000 001239999999
Q ss_pred CCCCCCCCCCCCccc--ccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCc
Q 009217 310 GFDSSTWDPSNDKFL--TENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGI 385 (540)
Q Consensus 310 Gvd~~~~~p~~~~~l--~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~ 385 (540)
|+|.+.|.|..+... ...+.. ++....+....++.+|+..+++.++++|+||+.+.||++.|++|+..+.+ .++
T Consensus 527 GVD~~~F~P~~~~~~Rl~~~~~~--i~~~l~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v 604 (816)
T 3s28_A 527 GADMSIYFPYTEEKRRLTKFHSE--IEELLYSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELA 604 (816)
T ss_dssp CCCTTTSCCTTCTTTCCGGGHHH--HHHHHHCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHC
T ss_pred CcCHHHcCccchhhhhhhhcccc--ccccccchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCe
Confidence 999999988643210 000000 00000000112344565334457899999999999999999999999875 479
Q ss_pred EEEEEecCCC--------hhHHHHHHHHHHHhCC-CcEEEEEec----ChHHHHHHHh-cCCEEEECCCCCCCchHHHHH
Q 009217 386 QFVFTGTNKL--------PSASRALVSFQEELKD-GIVIFVDSY----DDALLHLIFS-GSDIILCHSFHDPLLQVPLKA 451 (540)
Q Consensus 386 ~lvi~G~g~~--------~~~~~~l~~l~~~~~~-~~v~f~~~~----~~~~~~~~~~-~aDi~v~PS~~E~fglv~lEA 451 (540)
+|+|+|+|++ ....+.+++++++++. ++|+|+|.. +.+++..+|+ +||+||+||.+|+||++++||
T Consensus 605 ~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEA 684 (816)
T 3s28_A 605 NLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEA 684 (816)
T ss_dssp EEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHH
T ss_pred EEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHH
Confidence 9999997751 1255678888888875 899999844 3466667777 789999999999999999999
Q ss_pred HhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh----cCHHHHHHHHHHHHh---ccCChHH
Q 009217 452 LKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK----NNPLSWKRKIKDAML---QDFSWDA 524 (540)
Q Consensus 452 ma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~----~~~~~~~~~~~~a~~---~~fsw~~ 524 (540)
||||+|||+|+. ||++|++. +|.+|+++++.|+++++++|..++ +|++.+++++++|++ ++|||+.
T Consensus 685 MA~G~PVIasd~--GG~~EiV~-----dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~ 757 (816)
T 3s28_A 685 MTCGLPTFATCK--GGPAEIIV-----HGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQI 757 (816)
T ss_dssp HHTTCCEEEESS--BTHHHHCC-----BTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHH
T ss_pred HHcCCCEEEeCC--CChHHHHc-----cCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999999998 99999997 466789999999999999997766 899999999999876 7899999
Q ss_pred HHHHHHHHHHHHH
Q 009217 525 DCNDIHISAYTAI 537 (540)
Q Consensus 525 ~a~~~y~~lY~~l 537 (540)
++++ |.++|+..
T Consensus 758 ~a~~-ll~lY~~~ 769 (816)
T 3s28_A 758 YSQR-LLTLTGVY 769 (816)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHHHHHH
Confidence 9999 59999875
No 8
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3e-43 Score=363.16 Aligned_cols=365 Identities=14% Similarity=0.130 Sum_probs=278.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI 133 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 133 (540)
+++|||++++..|+|. .||.+.++.+|+++| +||+|+|+++......... ..
T Consensus 2 ~~~mkIl~v~~~~~p~--~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~---~~--------------------- 53 (394)
T 3okp_A 2 SASRKTLVVTNDFPPR--IGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHA---YD--------------------- 53 (394)
T ss_dssp --CCCEEEEESCCTTS--CSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHH---HH---------------------
T ss_pred CCCceEEEEeCccCCc--cchHHHHHHHHHHHh--cCCeEEEEECCCCccchhh---hc---------------------
Confidence 3569999999988774 699999999999999 6999999998754321010 00
Q ss_pred EEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCc-hhhHHHHHHHHHhhcCC
Q 009217 134 GVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWE-TAIVGPLFWDIFVKQGL 212 (540)
Q Consensus 134 ~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~-~~~~~~~~~~~~~~~~~ 212 (540)
...+++++.+... .. . . . ..+...+.+++++ .+|||||+|... ..+++.+++.
T Consensus 54 -~~~~~~~~~~~~~---~~------~--~-~----~~~~~~l~~~~~~--~~~Dvv~~~~~~~~~~~~~~~~~------- 107 (394)
T 3okp_A 54 -KTLDYEVIRWPRS---VM------L--P-T----PTTAHAMAEIIRE--REIDNVWFGAAAPLALMAGTAKQ------- 107 (394)
T ss_dssp -TTCSSEEEEESSS---SC------C--S-C----HHHHHHHHHHHHH--TTCSEEEESSCTTGGGGHHHHHH-------
T ss_pred -cccceEEEEcccc---cc------c--c-c----hhhHHHHHHHHHh--cCCCEEEECCcchHHHHHHHHHh-------
Confidence 0135666666421 00 0 0 0 1223445555555 589999999743 3344333332
Q ss_pred CCCc-eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCC
Q 009217 213 EGTR-ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 291 (540)
Q Consensus 213 ~~~p-~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 291 (540)
.++| +|+++|+.... . .. .. ....+++..++.+|.++++|+..++.+... ++
T Consensus 108 ~~~~~~i~~~h~~~~~---------~-~~-~~--------------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~- 160 (394)
T 3okp_A 108 AGASKVIASTHGHEVG---------W-SM-LP--------------GSRQSLRKIGTEVDVLTYISQYTLRRFKSA-FG- 160 (394)
T ss_dssp TTCSEEEEECCSTHHH---------H-TT-SH--------------HHHHHHHHHHHHCSEEEESCHHHHHHHHHH-HC-
T ss_pred cCCCcEEEEeccchhh---------h-hh-cc--------------hhhHHHHHHHHhCCEEEEcCHHHHHHHHHh-cC-
Confidence 4565 89999964320 0 00 00 112455677889999999999888776542 11
Q ss_pred CchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHH
Q 009217 292 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLE 371 (540)
Q Consensus 292 gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~ 371 (540)
...++.+||||+|.+.|.|.. ...+..+++++|++.+ .++++|+||+.++||++
T Consensus 161 --------~~~~~~vi~ngv~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~i~~~G~~~~~Kg~~ 214 (394)
T 3okp_A 161 --------SHPTFEHLPSGVDVKRFTPAT----------------PEDKSATRKKLGFTDT--TPVIACNSRLVPRKGQD 214 (394)
T ss_dssp --------SSSEEEECCCCBCTTTSCCCC----------------HHHHHHHHHHTTCCTT--CCEEEEESCSCGGGCHH
T ss_pred --------CCCCeEEecCCcCHHHcCCCC----------------chhhHHHHHhcCCCcC--ceEEEEEeccccccCHH
Confidence 357999999999999887742 2356788999998753 47899999999999999
Q ss_pred HHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCC-------C
Q 009217 372 NLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFH-------D 442 (540)
Q Consensus 372 ~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~-------E 442 (540)
.+++|+..+.+ .+++|+|+|+|+ ..+.+++++..+. ++|+|+|..+.+++..+|+.||++|+||.+ |
T Consensus 215 ~li~a~~~l~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e 290 (394)
T 3okp_A 215 SLIKAMPQVIAARPDAQLLIVGSGR---YESTLRRLATDVS-QNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290 (394)
T ss_dssp HHHHHHHHHHHHSTTCEEEEECCCT---THHHHHHHTGGGG-GGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCC
T ss_pred HHHHHHHHHHhhCCCeEEEEEcCch---HHHHHHHHHhccc-CeEEEcCCCCHHHHHHHHHhCCEEEecCcccccccccc
Confidence 99999999876 489999999775 3566777764443 799999999989999999999999999999 9
Q ss_pred CCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---cc
Q 009217 443 PLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QD 519 (540)
Q Consensus 443 ~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~ 519 (540)
+||++++|||+||+|||+++. ||..|++. +| +|+++++.|+++|+++|..+++|++.++++++++++ ++
T Consensus 291 ~~~~~~~Ea~a~G~PvI~~~~--~~~~e~i~-----~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 362 (394)
T 3okp_A 291 GLGIVYLEAQACGVPVIAGTS--GGAPETVT-----PA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAE 362 (394)
T ss_dssp SSCHHHHHHHHTTCCEEECSS--TTGGGGCC-----TT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHcCCCEEEeCC--CChHHHHh-----cC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998 99999997 45 689999999999999999999999999999998865 67
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 009217 520 FSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 520 fsw~~~a~~~y~~lY~~l~ 538 (540)
|||+.++++ |.++|+++.
T Consensus 363 ~s~~~~~~~-~~~~~~~~~ 380 (394)
T 3okp_A 363 WSWEIMGER-LTNILQSEP 380 (394)
T ss_dssp TBHHHHHHH-HHHHHHSCC
T ss_pred CCHHHHHHH-HHHHHHHhc
Confidence 999999999 599999764
No 9
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=4.3e-42 Score=355.35 Aligned_cols=360 Identities=14% Similarity=0.148 Sum_probs=260.1
Q ss_pred cccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEEcCeeEEEEc
Q 009217 66 MDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVVSGIGVTFIQ 145 (540)
Q Consensus 66 ~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~i~ 145 (540)
++|. .||++.++.+|+++|+++||+|+|+++..+..... ..+|+.+..+.
T Consensus 22 ~~p~--~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~----------------------------~~~~i~~~~~~ 71 (394)
T 2jjm_A 22 CYPS--VGGSGVVGTELGKQLAERGHEIHFITSGLPFRLNK----------------------------VYPNIYFHEVT 71 (394)
T ss_dssp CCC----CHHHHHHHHHHHHHHHTTCEEEEECSSCC----C----------------------------CCTTEEEECCC
T ss_pred cCCC--CCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCcccc----------------------------cCCceEEEecc
Confidence 3463 69999999999999999999999999754311000 01233333332
Q ss_pred cCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCC
Q 009217 146 PLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLN 225 (540)
Q Consensus 146 ~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~ 225 (540)
.. .+ . .+.... .. ..+...+.+++++ .+|||||+|.+.....+.++.... .+ .++|+|+|+|+..
T Consensus 72 ~~---~~-~---~~~~~~--~~-~~~~~~l~~~l~~--~~~Dvv~~~~~~~~~~~~~~~~~~--~~-~~~p~v~~~h~~~ 136 (394)
T 2jjm_A 72 VN---QY-S---VFQYPP--YD-LALASKMAEVAQR--ENLDILHVHYAIPHAICAYLAKQM--IG-ERIKIVTTLHGTD 136 (394)
T ss_dssp CC-----------CCSCC--HH-HHHHHHHHHHHHH--HTCSEEEECSSTTHHHHHHHHHHH--TT-TCSEEEEECCHHH
T ss_pred cc---cc-c---cccccc--cc-HHHHHHHHHHHHH--cCCCEEEEcchhHHHHHHHHHHHh--hc-CCCCEEEEEecCc
Confidence 10 00 0 011111 11 1223444555554 589999999754332222322211 01 2689999999742
Q ss_pred CCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceE
Q 009217 226 SLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLL 305 (540)
Q Consensus 226 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~ 305 (540)
.. ..+... ....+.+..++.+|.++++|+..++.+... ++ ...++.
T Consensus 137 ~~---------~~~~~~---------------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~---------~~~~~~ 182 (394)
T 2jjm_A 137 IT---------VLGSDP---------------SLNNLIRFGIEQSDVVTAVSHSLINETHEL-VK---------PNKDIQ 182 (394)
T ss_dssp HH---------TTTTCT---------------TTHHHHHHHHHHSSEEEESCHHHHHHHHHH-TC---------CSSCEE
T ss_pred cc---------ccCCCH---------------HHHHHHHHHHhhCCEEEECCHHHHHHHHHh-hC---------CcccEE
Confidence 10 000000 012456677889999999999888776542 11 247999
Q ss_pred EeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc-C
Q 009217 306 VAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR-G 384 (540)
Q Consensus 306 vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~-~ 384 (540)
+||||+|.+.|.|. .+..++++++++.+ .+.++|+||+.++||++.+++|++.+.+. +
T Consensus 183 vi~ngv~~~~~~~~-------------------~~~~~~~~~~~~~~--~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~ 241 (394)
T 2jjm_A 183 TVYNFIDERVYFKR-------------------DMTQLKKEYGISES--EKILIHISNFRKVKRVQDVVQAFAKIVTEVD 241 (394)
T ss_dssp ECCCCCCTTTCCCC-------------------CCHHHHHHTTCC-----CEEEEECCCCGGGTHHHHHHHHHHHHHSSC
T ss_pred EecCCccHHhcCCc-------------------chHHHHHHcCCCCC--CeEEEEeeccccccCHHHHHHHHHHHHhhCC
Confidence 99999999888765 23456778887543 47899999999999999999999998764 7
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
++|+|+|+|+. .+.+++++++++. ++|.|+|. . +++..+|+.||++|+||.+|+||++++|||+||+|||+++.
T Consensus 242 ~~l~i~G~g~~---~~~l~~~~~~~~l~~~v~~~g~-~-~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~ 316 (394)
T 2jjm_A 242 AKLLLVGDGPE---FCTILQLVKNLHIEDRVLFLGK-Q-DNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRV 316 (394)
T ss_dssp CEEEEECCCTT---HHHHHHHHHTTTCGGGBCCCBS-C-SCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECC
T ss_pred CEEEEECCchH---HHHHHHHHHHcCCCCeEEEeCc-h-hhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecC
Confidence 99999998753 5678888888764 78998874 3 44568999999999999999999999999999999999998
Q ss_pred CCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHHHHh
Q 009217 464 SDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 464 ~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fsw~~~a~~~y~~lY~~l~ 538 (540)
||++|++.+ |.+|+++++.|+++|+++|..+++|++.++++++++++ ++|||+.++++ |+++|+++.
T Consensus 317 --~~~~e~v~~-----~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~ 386 (394)
T 2jjm_A 317 --GGIPEVIQH-----GDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQ-YETIYYDVL 386 (394)
T ss_dssp --TTSTTTCCB-----TTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHTC
T ss_pred --CChHHHhhc-----CCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHH
Confidence 999999973 55679999999999999999999999999999988865 78999999999 599999874
No 10
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=6.1e-42 Score=356.81 Aligned_cols=364 Identities=12% Similarity=0.093 Sum_probs=258.3
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
++|||++++.. + ..||++.++.+|+++|.++||+|+|++........+....+.. .
T Consensus 39 ~~mkIl~v~~~--~--~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~-------~------------- 94 (416)
T 2x6q_A 39 KGRSFVHVNST--S--FGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHN-------A------------- 94 (416)
T ss_dssp TTCEEEEEESC--S--SSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHH-------H-------------
T ss_pred hccEEEEEeCC--C--CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccce-------e-------------
Confidence 56999999975 3 4699999999999999999999999986533110000000000 0
Q ss_pred EEcCeeEEEEccCCCCCCCCCCCCCCCCCh-hHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCC
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRESVYGYSDD-FERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~-~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~ 213 (540)
..+.+ .+..... ...+..+.+...+.++ ..+|||||+|++....+..++ + .
T Consensus 95 -~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~--~~~~Dvv~~~~~~~~~~~~~~------~--~ 146 (416)
T 2x6q_A 95 -LQGNE-----------------SLKLTEEMKELYLNVNRENSKFID--LSSFDYVLVHDPQPAALIEFY------E--K 146 (416)
T ss_dssp -HTTCC-----------------SCCCCHHHHHHHHHHHHHHHHSSC--GGGSSEEEEESSTTGGGGGGS------C--C
T ss_pred -ecccc-----------------cccccHHHHHHHHHHHHHHHHHHh--hcCCCEEEEeccchhhHHHHH------H--h
Confidence 00110 0111111 1111111122222221 248999999986554332222 1 2
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhcccee-eccccchhhhhhcccCCC
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVV-IVSSMHSKGRIIRSLSHG 292 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi-~vS~~~~~~~~~~~~~~g 292 (540)
++|+|+|+|+..... . . ....+++..+..+|.++ ++|+...+.+
T Consensus 147 ~~p~v~~~h~~~~~~---~----------~--------------~~~~~~~~~~~~~~~~i~~~s~~~~~~~-------- 191 (416)
T 2x6q_A 147 KSPWLWRCHIDLSSP---N----------R--------------EFWEFLRRFVEKYDRYIFHLPEYVQPEL-------- 191 (416)
T ss_dssp CSCEEEECCSCCSSC---C----------H--------------HHHHHHHHHHTTSSEEEESSGGGSCTTS--------
T ss_pred cCCEEEEEccccCCc---c----------H--------------HHHHHHHHHHHhCCEEEEechHHHHhhC--------
Confidence 389999999743210 0 0 01223444566677766 5555433211
Q ss_pred chHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHH
Q 009217 293 LESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLEN 372 (540)
Q Consensus 293 l~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~ 372 (540)
+..++.+||||+|...+.+.. -....+..+++++|++.+ .++++|+||+.++||++.
T Consensus 192 -------~~~~~~vi~ngvd~~~~~~~~--------------~~~~~~~~~r~~~~~~~~--~~~i~~vGrl~~~Kg~~~ 248 (416)
T 2x6q_A 192 -------DRNKAVIMPPSIDPLSEKNVE--------------LKQTEILRILERFDVDPE--KPIITQVSRFDPWKGIFD 248 (416)
T ss_dssp -------CTTTEEECCCCBCTTSTTTSC--------------CCHHHHHHHHHHTTCCTT--SCEEEEECCCCTTSCHHH
T ss_pred -------CccceEEeCCCCChhhhcccc--------------cChhhHHHHHHHhCCCCC--CcEEEEEeccccccCHHH
Confidence 247899999999987665431 012256678899998753 578999999999999999
Q ss_pred HHHHHHHHHh--cCcEEEEEecCCC--hhHHHHHHHHHHHhCC-CcEEEEEecC---hHHHHHHHhcCCEEEECCCCCCC
Q 009217 373 LKAVVRGAKM--RGIQFVFTGTNKL--PSASRALVSFQEELKD-GIVIFVDSYD---DALLHLIFSGSDIILCHSFHDPL 444 (540)
Q Consensus 373 Li~A~~~l~~--~~~~lvi~G~g~~--~~~~~~l~~l~~~~~~-~~v~f~~~~~---~~~~~~~~~~aDi~v~PS~~E~f 444 (540)
|++|+..+.+ ++++|+|+|+|+. +...+.+++++++++. ++|+|+|.++ .+++..+|++||++|+||.+|+|
T Consensus 249 li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~ 328 (416)
T 2x6q_A 249 VIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGF 328 (416)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSS
T ss_pred HHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCC
Confidence 9999999876 4899999998863 3456778888888764 7999998553 67788999999999999999999
Q ss_pred chHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCC
Q 009217 445 LQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML---QDFS 521 (540)
Q Consensus 445 glv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~---~~fs 521 (540)
|++++|||+||+|||+++. ||++|++.+ |.+|++++ |+++|+++|..+++|++.++++++++++ ++||
T Consensus 329 ~~~~lEAma~G~PvI~~~~--~g~~e~i~~-----~~~g~l~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs 399 (416)
T 2x6q_A 329 GLTVTEAMWKGKPVIGRAV--GGIKFQIVD-----GETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFI 399 (416)
T ss_dssp CHHHHHHHHTTCCEEEESC--HHHHHHCCB-----TTTEEEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTB
T ss_pred ccHHHHHHHcCCCEEEccC--CCChhheec-----CCCeEEEC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999998 999999974 45678997 8999999999999999999999998865 5899
Q ss_pred hHHHHHHHHHHHHHHHh
Q 009217 522 WDADCNDIHISAYTAIK 538 (540)
Q Consensus 522 w~~~a~~~y~~lY~~l~ 538 (540)
|+.++++ |.++|+++.
T Consensus 400 ~~~~~~~-~~~~~~~l~ 415 (416)
T 2x6q_A 400 ITKHMER-YLDILNSLG 415 (416)
T ss_dssp HHHHHHH-HHHHHHTC-
T ss_pred HHHHHHH-HHHHHHHhh
Confidence 9999999 599999864
No 11
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=100.00 E-value=2.9e-43 Score=371.18 Aligned_cols=436 Identities=12% Similarity=0.053 Sum_probs=279.9
Q ss_pred EEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEeecCCCCccccccCcceeeee--------eeee---cCCeeeee
Q 009217 62 ICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILPKYACMNLDGVQGLREIKAE--------CYSY---FNGQLHAN 129 (540)
Q Consensus 62 i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~--------~~~~---~~~~~~~~ 129 (540)
+++|..- ++||+-+++..=|..+++ .|-...+|.|........+++.+..-... +... ...+...+
T Consensus 33 ~swEV~N--kVGGIyTVl~tka~~~~~~~gd~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v 110 (725)
T 3nb0_A 33 TATEVAN--RVGGIYSVLKSKAPITVAQYKDHYHLIGPLNKATYQNEVDILDWKKPEAFSDEMRPVQHALQTMESRGVHF 110 (725)
T ss_dssp EETTTTS--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECCTTTHHHHEEECCSSSGGGSCSTTHHHHHHHHHHHTTTCCE
T ss_pred eehhhhc--ccCCeEEEEecchhHHHHHhCCeEEEECCCCCCcCCcceeecCCCCchhhcchhHHHHHHHHHHHHCCCeE
Confidence 4555433 789999999999988765 78899999996332211111100000000 0000 00111112
Q ss_pred EEEEEEEcCeeEEEE-ccCCCCCCCCC----------------CCCCCCCChhHHHHHHHHHHHHHHHHcC-CCCCEEEE
Q 009217 130 KIWIGVVSGIGVTFI-QPLHYSSFFNR----------------ESVYGYSDDFERFTYFSRASLDYIVKSR-KQPDVLHI 191 (540)
Q Consensus 130 ~~~~~~~~gv~v~~i-~~~~~~~~~~~----------------~~~y~~~~~~~r~~~~~~~~~~~~~~~~-~~pDIIH~ 191 (540)
++=+..++|.|.+.+ +- ..++.. ...|++.++..+|+||+.++++.+..+. ++|||+|+
T Consensus 111 ~~GrW~i~G~P~viL~d~---~~~~~~~~~~~~~lw~~~~i~s~~~yg~~dd~~~F~y~~~avl~~l~~~~~~~pdIiH~ 187 (725)
T 3nb0_A 111 VYGRWLIEGAPKVILFDL---DSVRGYSNEWKGDLWSLVGIPSPENDFETNDAILLGYTVAWFLGEVAHLDSQHAIVAHF 187 (725)
T ss_dssp EEEEESSTTCCEEEEECS---GGGGGGHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEEecCCCceEEEEeC---hHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHHhcCCCCCcEEEe
Confidence 222224678775544 41 112221 1123345678999999999999987765 67999999
Q ss_pred cCCchhhHHHHHHHHHhhcCCCCCceEEEecCCC---C---CCCCC-hhhhhhcCCCccccCCCccccCCCCCccchhhh
Q 009217 192 HNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLN---S---LCLEH-PDKLALCGLDPARLHRPDRLQDNTKTHLVNILK 264 (540)
Q Consensus 192 h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~---~---~~~~~-~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (540)
|+|++++++.+++.. ..++|+|+|+|+.. + ||..+ ...+...+++... ..++.+ ...+++|
T Consensus 188 HDW~tg~~~~~Lk~~-----~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea----~~~~i~---~~~~~EK 255 (725)
T 3nb0_A 188 HEWLAGVALPLCRKR-----RIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEA----GRFGIY---HRYCIER 255 (725)
T ss_dssp ESGGGCTHHHHHHHT-----TCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHH----HHTTCH---HHHHHHH
T ss_pred CchhhhHHHHHHHHh-----CCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhh----hhhchh---HHHHHHH
Confidence 999999998888653 36899999999974 2 44332 1112222222110 011111 3478999
Q ss_pred HHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHH
Q 009217 265 GGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQ 344 (540)
Q Consensus 265 ~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr 344 (540)
.++.+||.|+|||+.+++|+.. ++..+.+.+ ||||||++.|+|... ....|..+|..++
T Consensus 256 aga~~AD~ITTVS~~yA~Ei~~---------Ll~r~~d~i--IpNGID~~~f~p~~~----------~~~~k~~aK~klq 314 (725)
T 3nb0_A 256 AAAHSADVFTTVSQITAFEAEH---------LLKRKPDGI--LPNGLNVIKFQAFHE----------FQNLHALKKEKIN 314 (725)
T ss_dssp HHHHHSSEEEESSHHHHHHHHH---------HTSSCCSEE--CCCCBCCCCCSSTTH----------HHHHHHHHHHHHH
T ss_pred HHHHhCCEEEECCHHHHHHHHH---------HhcCCCCEE--EcCCccccccCcchh----------hHHHHHHHHHHHH
Confidence 9999999999999999999874 222234433 999999999998521 0122444666665
Q ss_pred HHh------CCCCC-CCceEEEEEeccc-ccCCHHHHHHHHHHHHhc---------CcEEEEEecCCCh-----------
Q 009217 345 QQL------GLSKD-ASTIVVGCIFSDV-SDVFLENLKAVVRGAKMR---------GIQFVFTGTNKLP----------- 396 (540)
Q Consensus 345 ~~~------gl~~~-~~~~lv~~vgrl~-~~KG~~~Li~A~~~l~~~---------~~~lvi~G~g~~~----------- 396 (540)
+.+ |++.+ ++.++++.+||+. ++||+|++++|+.++... -+.|+|+..+...
T Consensus 315 ~~l~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~ 394 (725)
T 3nb0_A 315 DFVRGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAE 394 (725)
T ss_dssp HHHHHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHH
T ss_pred HHHHhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhH
Confidence 543 34333 3456777789999 799999999999988731 2567776543110
Q ss_pred -------------------------------------hHHH--------------------------------------H
Q 009217 397 -------------------------------------SASR--------------------------------------A 401 (540)
Q Consensus 397 -------------------------------------~~~~--------------------------------------~ 401 (540)
+.++ .
T Consensus 395 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~ 474 (725)
T 3nb0_A 395 VRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDL 474 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccH
Confidence 0000 0
Q ss_pred HHHHHHHhCC-----Cc--EEEEEecC-hH------HHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc
Q 009217 402 LVSFQEELKD-----GI--VIFVDSYD-DA------LLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE 467 (540)
Q Consensus 402 l~~l~~~~~~-----~~--v~f~~~~~-~~------~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg 467 (540)
+-...++++. ++ |.|++.+- .. .+..+|++||+||+||.+||||++++||||||+|||+|++ ||
T Consensus 475 Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~--gG 552 (725)
T 3nb0_A 475 ILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNV--SG 552 (725)
T ss_dssp HHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETT--BH
T ss_pred HHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCC--CC
Confidence 1111223331 33 45665552 22 4678999999999999999999999999999999999999 99
Q ss_pred cccceeccCC--ccccceeecC---CCCHH----HHHHHHHHHhc-CHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHH
Q 009217 468 FRHFAEFDHE--STRFSRFISS---TFGNI----SLSQALEEIKN-NPLSWKRKIKDAML--QDFSWDADCNDIHISAYT 535 (540)
Q Consensus 468 ~~e~v~~~~~--~~g~~G~l~~---~~d~~----~la~ai~~l~~-~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~ 535 (540)
++|+|.+... +.+.+|++++ +.+++ +|+++|..+.+ ++..+.++++++.+ ++|||++++++ |+++|+
T Consensus 553 ~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~-Yl~~Ye 631 (725)
T 3nb0_A 553 FGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLE-YVKARQ 631 (725)
T ss_dssp HHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHH-HHHHHH
T ss_pred hhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHH
Confidence 9999875321 1124678874 34544 45555555553 77788888887744 89999999999 699999
Q ss_pred HHh
Q 009217 536 AIK 538 (540)
Q Consensus 536 ~l~ 538 (540)
.+.
T Consensus 632 ~aL 634 (725)
T 3nb0_A 632 LAL 634 (725)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=2.4e-42 Score=353.98 Aligned_cols=363 Identities=11% Similarity=0.086 Sum_probs=262.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||++++..+.| .||.+.++.+|+++|+++||+|+|+++...... .
T Consensus 1 MkIl~i~~~~~~---~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-------------------------------~ 46 (374)
T 2iw1_A 1 MIVAFCLYKYFP---FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC-------------------------------P 46 (374)
T ss_dssp -CEEEECSEECT---TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC-------------------------------C
T ss_pred CeEEEEEeecCC---CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC-------------------------------C
Confidence 899999988766 499999999999999999999999997532110 1
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
+|++++.++.. . .....++..+.+.+.+.+++ .+|||||+|++..++...+. .....++
T Consensus 47 ~~~~v~~~~~~---~----------~~~~~~~~~~~~~l~~~i~~--~~~Dvv~~~~~~~~~~~~~~------~~~~~~~ 105 (374)
T 2iw1_A 47 KAFELIQVPVK---S----------HTNHGRNAEYYAWVQNHLKE--HPADRVVGFNKMPGLDVYFA------ADVCYAE 105 (374)
T ss_dssp TTCEEEECCCC---C----------SSHHHHHHHHHHHHHHHHHH--SCCSEEEESSCCTTCSEEEC------CSCCHHH
T ss_pred CCcEEEEEccC---c----------ccchhhHHHHHHHHHHHHhc--cCCCEEEEecCCCCceeeec------cccccce
Confidence 35566555310 0 01122233334455555554 58999999985443321111 0112334
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHh--hccceeeccccchhhhhhcccCCCch
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVV--YSNKVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
.+.+.|+.... .... .. ....+.+..+. .+|.++++|+..++.+... +|
T Consensus 106 ~~~~~~~~~~~------------~~~~-------~~-----~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~---- 156 (374)
T 2iw1_A 106 KVAQEKGFLYR------------LTSR-------YR-----HYAAFERATFEQGKSTKLMMLTDKQIADFQKH-YQ---- 156 (374)
T ss_dssp HHHHHCCHHHH------------TSHH-------HH-----HHHHHHHHHHSTTCCCEEEESCHHHHHHHHHH-HC----
T ss_pred eeeecccchhh------------hcHH-------HH-----HHHHHHHHHhhccCCcEEEEcCHHHHHHHHHH-hC----
Confidence 44444532100 0000 00 00112222332 6899999999888766531 12
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
.+..++.+||||+|.+.|.|.. ....+..+++++|++.+ .++++|+||+.++||++.++
T Consensus 157 ----~~~~~~~vi~ngv~~~~~~~~~---------------~~~~~~~~~~~~~~~~~--~~~i~~~G~~~~~K~~~~li 215 (374)
T 2iw1_A 157 ----TEPERFQILPPGIYPDRKYSEQ---------------IPNSREIYRQKNGIKEQ--QNLLLQVGSDFGRKGVDRSI 215 (374)
T ss_dssp ----CCGGGEEECCCCCCGGGSGGGS---------------CTTHHHHHHHHTTCCTT--CEEEEEECSCTTTTTHHHHH
T ss_pred ----CChhheEEecCCcCHHhcCccc---------------chhHHHHHHHHhCCCCC--CeEEEEeccchhhcCHHHHH
Confidence 2467899999999988776542 11245678899998753 58899999999999999999
Q ss_pred HHHHHHHh---cCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHH
Q 009217 375 AVVRGAKM---RGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLK 450 (540)
Q Consensus 375 ~A~~~l~~---~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lE 450 (540)
+|+..+.+ .+++|+|+|+|+. +.+++++++++. ++|+|+|. . +++..+|+.||++|+||.+|+||++++|
T Consensus 216 ~a~~~l~~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~~~v~~~g~-~-~~~~~~~~~ad~~v~ps~~e~~~~~~~E 289 (374)
T 2iw1_A 216 EALASLPESLRHNTLLFVVGQDKP----RKFEALAEKLGVRSNVHFFSG-R-NDVSELMAAADLLLHPAYQEAAGIVLLE 289 (374)
T ss_dssp HHHHTSCHHHHHTEEEEEESSSCC----HHHHHHHHHHTCGGGEEEESC-C-SCHHHHHHHCSEEEECCSCCSSCHHHHH
T ss_pred HHHHHhHhccCCceEEEEEcCCCH----HHHHHHHHHcCCCCcEEECCC-c-ccHHHHHHhcCEEEeccccCCcccHHHH
Confidence 99998865 3899999998752 467777777764 79999875 3 4467899999999999999999999999
Q ss_pred HHhcCCceEEEecCCCccccceeccCCccccceeecC-CCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHH
Q 009217 451 ALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISS-TFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCN 527 (540)
Q Consensus 451 Ama~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~-~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~ 527 (540)
||+||+|||+++. ||..|++.+ |.+|++++ +.|+++|+++|..+++|++.++++++++++ +.|+|+..++
T Consensus 290 a~a~G~Pvi~~~~--~~~~e~i~~-----~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T 2iw1_A 290 AITAGLPVLTTAV--CGYAHYIAD-----ANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPE 362 (374)
T ss_dssp HHHHTCCEEEETT--STTTHHHHH-----HTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred HHHCCCCEEEecC--CCchhhhcc-----CCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999998 999999874 45679997 889999999999999999999999998876 6789999999
Q ss_pred HHHHHHHHHHh
Q 009217 528 DIHISAYTAIK 538 (540)
Q Consensus 528 ~~y~~lY~~l~ 538 (540)
+ +.++++...
T Consensus 363 ~-~~~~l~~~l 372 (374)
T 2iw1_A 363 K-AADIITGGL 372 (374)
T ss_dssp H-HHHHHHCC-
T ss_pred H-HHHHHHHhh
Confidence 9 498887653
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=3.7e-40 Score=342.92 Aligned_cols=362 Identities=12% Similarity=0.038 Sum_probs=259.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEEEE
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIGVV 136 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (540)
|||+++++. +|. .||++.++..|+++|+++ |+|+|++........ ..
T Consensus 1 MkI~~v~~~-~p~--~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~-----~~------------------------ 47 (413)
T 3oy2_A 1 MKLIIVGAH-SSV--PSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSV-----HA------------------------ 47 (413)
T ss_dssp CEEEEEEEC-TTC--CSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCS-----CS------------------------
T ss_pred CeEEEecCC-CCC--CCCHHHHHHHHHHHHHhc-CCeEEEeecCCCccc-----cc------------------------
Confidence 899999875 453 599999999999999999 999999875432110 00
Q ss_pred cCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCc
Q 009217 137 SGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTR 216 (540)
Q Consensus 137 ~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p 216 (540)
....+.......-..+... .+. ...+.+.+++ .+|||||+|.|...+. .++..... .....+
T Consensus 48 -~~~~~~~~~~~~~~~~~~~-~~~-----------~~~l~~~l~~--~~~Div~~~~~~~~~~-~~~~~~~~--~~~~~~ 109 (413)
T 3oy2_A 48 -NIEEFDAQTAEHVRGLNEQ-GFY-----------YSGLSEFIDV--HKPDIVMIYNDPIVIG-NYLLAMGK--CSHRTK 109 (413)
T ss_dssp -SSEEEEHHHHHHHTTCCST-TCC-----------HHHHHHHHHH--HCCSEEEEEECHHHHH-HHHHHGGG--CCSCCE
T ss_pred -ccccCCccccccccccccc-cch-----------HHHHHHHHHh--cCCCEEEEcchHHHHH-HHHHHhcc--CCCCCc
Confidence 0000000000000000000 010 0223334443 5899999997654433 33332110 001345
Q ss_pred eEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhcc--ceeeccccchhhhhhcccCCCch
Q 009217 217 ILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSN--KVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 217 ~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
++.++|+..... ....+..++.+| .++++|+..++.+.. ++
T Consensus 110 ~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ii~~S~~~~~~~~~--~~---- 152 (413)
T 3oy2_A 110 IVLYVDLVSKNI-------------------------------RENLWWIFSHPKVVGVMAMSKCWISDICN--YG---- 152 (413)
T ss_dssp EEEEECCCSBSC-------------------------------CGGGGGGGGCTTEEEEEESSTHHHHHHHH--TT----
T ss_pred eeeeccccchhh-------------------------------HHHHHHHHhccCCceEEEcCHHHHHHHHH--cC----
Confidence 666666432100 011244567777 999999998887654 22
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
.+.++.+||||+|.+.|. ..+++++++.+.+.++++|+||+.++||++.|+
T Consensus 153 -----~~~~~~vi~ngvd~~~~~------------------------~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li 203 (413)
T 3oy2_A 153 -----CKVPINIVSHFVDTKTIY------------------------DARKLVGLSEYNDDVLFLNMNRNTARKRLDIYV 203 (413)
T ss_dssp -----CCSCEEECCCCCCCCCCT------------------------THHHHTTCGGGTTSEEEECCSCSSGGGTHHHHH
T ss_pred -----CCCceEEeCCCCCHHHHH------------------------HHHHhcCCCcccCceEEEEcCCCchhcCcHHHH
Confidence 257999999999988761 145677776533468999999999999999999
Q ss_pred HHHHHHHh--cCcEEEEEecCCCh---hHHHHHHHHHHHhCC-Cc-------EEEEEecChHHHHHHHhcCCEEEECCCC
Q 009217 375 AVVRGAKM--RGIQFVFTGTNKLP---SASRALVSFQEELKD-GI-------VIFVDSYDDALLHLIFSGSDIILCHSFH 441 (540)
Q Consensus 375 ~A~~~l~~--~~~~lvi~G~g~~~---~~~~~l~~l~~~~~~-~~-------v~f~~~~~~~~~~~~~~~aDi~v~PS~~ 441 (540)
+|+..+.+ ++++|+|+|+|+.. .+.+.+++++++++. ++ |.|.|.++.+++..+|+.||++|+||.+
T Consensus 204 ~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~ 283 (413)
T 3oy2_A 204 LAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSG 283 (413)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSC
T ss_pred HHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCc
Confidence 99999875 48999999988631 245788888888875 44 7677778888999999999999999999
Q ss_pred CCCchHHHHHHhcCCceEEEecCCCccccceeccCC----------cccccee--ecCCCCHHHHHHHHHHHhcCHHHHH
Q 009217 442 DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHE----------STRFSRF--ISSTFGNISLSQALEEIKNNPLSWK 509 (540)
Q Consensus 442 E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~----------~~g~~G~--l~~~~d~~~la~ai~~l~~~~~~~~ 509 (540)
|+||++++|||+||+|||+++. ||++|++.++.. .+|.+|+ ++++.|+++|+++| .+++|++.++
T Consensus 284 E~~~~~~lEAma~G~PvI~s~~--~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~ 360 (413)
T 3oy2_A 284 EGFGLCSAEGAVLGKPLIISAV--GGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRK 360 (413)
T ss_dssp CSSCHHHHHHHTTTCCEEEECC--HHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHH
T ss_pred CCCCcHHHHHHHcCCCEEEcCC--CChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHH
Confidence 9999999999999999999998 999999975321 1122378 99999999999999 9999999999
Q ss_pred HHHHHHHh---ccCChHHHHHHHHHHHHHHHhc
Q 009217 510 RKIKDAML---QDFSWDADCNDIHISAYTAIKN 539 (540)
Q Consensus 510 ~~~~~a~~---~~fsw~~~a~~~y~~lY~~l~~ 539 (540)
++++++++ ++|||+.++++ |+++|+++.+
T Consensus 361 ~~~~~a~~~~~~~fs~~~~~~~-~~~~~~~~~~ 392 (413)
T 3oy2_A 361 EYGKRVQDFVKTKPTWDDISSD-IIDFFNSLLR 392 (413)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHH-HHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHh
Confidence 99998876 78999999999 5999998853
No 14
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=1.1e-40 Score=338.09 Aligned_cols=314 Identities=13% Similarity=0.070 Sum_probs=241.2
Q ss_pred CceEEEEEec--------c---ccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCC
Q 009217 56 GFHIIHICTE--------M---DPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNG 124 (540)
Q Consensus 56 ~mkIl~i~~e--------~---~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 124 (540)
+|||++++.. + +| ...||.+.++.+|+++|.++||+|+|+++.......
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p-~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------------- 62 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPP-QGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------------- 62 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSC-SSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS-------------------
T ss_pred ccEEEEEeccccccCcccccccCc-ccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC-------------------
Confidence 5999999998 4 33 246999999999999999999999999976442211
Q ss_pred eeeeeEEEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHH
Q 009217 125 QLHANKIWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFW 204 (540)
Q Consensus 125 ~~~~~~~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~ 204 (540)
++++++.. . .+ ..+.+++++ .+|||||+|.+...+.. .
T Consensus 63 ------------~~~~~~~~-----------~-~~-------------~~l~~~l~~--~~~Dvi~~~~~~~~~~~--~- 100 (342)
T 2iuy_A 63 ------------PGLTVVPA-----------G-EP-------------EEIERWLRT--ADVDVVHDHSGGVIGPA--G- 100 (342)
T ss_dssp ------------TTEEECSC-----------C-SH-------------HHHHHHHHH--CCCSEEEECSSSSSCST--T-
T ss_pred ------------CcceeccC-----------C-cH-------------HHHHHHHHh--cCCCEEEECCchhhHHH--H-
Confidence 12222100 0 00 133444554 58999999986554331 1
Q ss_pred HHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhh
Q 009217 205 DIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGR 284 (540)
Q Consensus 205 ~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~ 284 (540)
...++| |+|+|+.... + ..+|.++++|+..++.+
T Consensus 101 ------~~~~~p-v~~~h~~~~~--------------------------~-------------~~~d~ii~~S~~~~~~~ 134 (342)
T 2iuy_A 101 ------LPPGTA-FISSHHFTTR--------------------------P-------------VNPVGCTYSSRAQRAHC 134 (342)
T ss_dssp ------CCTTCE-EEEEECSSSB--------------------------C-------------SCCTTEEESCHHHHHHT
T ss_pred ------hhcCCC-EEEecCCCCC--------------------------c-------------ccceEEEEcCHHHHHHH
Confidence 136889 9999975310 0 01799999999887754
Q ss_pred hhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecc
Q 009217 285 IIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSD 364 (540)
Q Consensus 285 ~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl 364 (540)
.. ..++.+||||+|.+.|.|... .. ++.+.++|+||+
T Consensus 135 ~~--------------~~~~~vi~ngvd~~~~~~~~~--------------------------~~---~~~~~i~~vG~~ 171 (342)
T 2iuy_A 135 GG--------------GDDAPVIPIPVDPARYRSAAD--------------------------QV---AKEDFLLFMGRV 171 (342)
T ss_dssp TC--------------CTTSCBCCCCBCGGGSCCSTT--------------------------CC---CCCSCEEEESCC
T ss_pred hc--------------CCceEEEcCCCChhhcCcccc--------------------------cC---CCCCEEEEEecc
Confidence 32 468999999999888776521 01 123579999999
Q ss_pred cccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC----
Q 009217 365 VSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF---- 440 (540)
Q Consensus 365 ~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~---- 440 (540)
.++||++.+++|++.+ +++|+|+|+|+ ..+.+++++++++ ++|+|+|..+++++..+|+.||++|+||.
T Consensus 172 ~~~Kg~~~li~a~~~~---~~~l~i~G~g~---~~~~l~~~~~~~~-~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~ 244 (342)
T 2iuy_A 172 SPHKGALEAAAFAHAC---GRRLVLAGPAW---EPEYFDEITRRYG-STVEPIGEVGGERRLDLLASAHAVLAMSQAVTG 244 (342)
T ss_dssp CGGGTHHHHHHHHHHH---TCCEEEESCCC---CHHHHHHHHHHHT-TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCC
T ss_pred ccccCHHHHHHHHHhc---CcEEEEEeCcc---cHHHHHHHHHHhC-CCEEEeccCCHHHHHHHHHhCCEEEECCccccc
Confidence 9999999999999987 89999999875 3567788888886 89999999999888999999999999999
Q ss_pred ------CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 009217 441 ------HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKD 514 (540)
Q Consensus 441 ------~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~ 514 (540)
.|+||++++|||+||+|||+++. ||++|++.+. .|.+|+++++ |+++|+++|..+++ .+.+++
T Consensus 245 ~~~~~~~E~~~~~~~EAma~G~PvI~s~~--~~~~e~~~~~---~~~~g~~~~~-d~~~l~~~i~~l~~-----~~~~~~ 313 (342)
T 2iuy_A 245 PWGGIWCEPGATVVSEAAVSGTPVVGTGN--GCLAEIVPSV---GEVVGYGTDF-APDEARRTLAGLPA-----SDEVRR 313 (342)
T ss_dssp TTCSCCCCCCCHHHHHHHHTTCCEEECCT--TTHHHHGGGG---EEECCSSSCC-CHHHHHHHHHTSCC-----HHHHHH
T ss_pred ccccccccCccHHHHHHHhcCCCEEEcCC--CChHHHhccc---CCCceEEcCC-CHHHHHHHHHHHHH-----HHHHHH
Confidence 89999999999999999999998 9999999730 0556799999 99999999999987 112222
Q ss_pred HHhccCChHHHHHHHHHHHHHHHhc
Q 009217 515 AMLQDFSWDADCNDIHISAYTAIKN 539 (540)
Q Consensus 515 a~~~~fsw~~~a~~~y~~lY~~l~~ 539 (540)
...++|||+.++++ |.++|+++.+
T Consensus 314 ~~~~~~s~~~~~~~-~~~~~~~~~~ 337 (342)
T 2iuy_A 314 AAVRLWGHVTIAER-YVEQYRRLLA 337 (342)
T ss_dssp HHHHHHBHHHHHHH-HHHHHHHHHT
T ss_pred HHHHhcCHHHHHHH-HHHHHHHHHc
Confidence 22378999999999 5999998753
No 15
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=4.2e-40 Score=341.14 Aligned_cols=361 Identities=17% Similarity=0.170 Sum_probs=259.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI 133 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 133 (540)
.++|||++++..++| ..||.+.++..|+++|.++||+|+++++........ ...
T Consensus 18 ~~~MkIl~i~~~~~~--~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~---~~~--------------------- 71 (406)
T 2gek_A 18 GSHMRIGMVCPYSFD--VPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLP---DYV--------------------- 71 (406)
T ss_dssp ---CEEEEECSSCTT--SCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCC---TTE---------------------
T ss_pred CCcceEEEEeccCCC--CCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCC---ccc---------------------
Confidence 456999999975444 459999999999999999999999999865432111 000
Q ss_pred EEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCC
Q 009217 134 GVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLE 213 (540)
Q Consensus 134 ~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~ 213 (540)
...| +++.++. ......+.+. ..+...+.+++++ .+|||||+|.+.....+.++.. ..
T Consensus 72 -~~~~-~~~~~~~------~~~~~~~~~~------~~~~~~l~~~l~~--~~~Dii~~~~~~~~~~~~~~~~------~~ 129 (406)
T 2gek_A 72 -VSGG-KAVPIPY------NGSVARLRFG------PATHRKVKKWIAE--GDFDVLHIHEPNAPSLSMLALQ------AA 129 (406)
T ss_dssp -EECC-CCC------------------CC------HHHHHHHHHHHHH--HCCSEEEEECCCSSSHHHHHHH------HE
T ss_pred -ccCC-cEEeccc------cCCccccccc------HHHHHHHHHHHHh--cCCCEEEECCccchHHHHHHHH------hc
Confidence 0112 2222210 0000000000 0112344455554 4899999998655444333322 14
Q ss_pred CCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCc
Q 009217 214 GTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGL 293 (540)
Q Consensus 214 ~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl 293 (540)
++|+|+++|+..... ..... ...+++..++.+|.++++|+..++.+.. .+
T Consensus 130 ~~~~i~~~h~~~~~~----~~~~~---------------------~~~~~~~~~~~~d~ii~~s~~~~~~~~~-~~---- 179 (406)
T 2gek_A 130 EGPIVATFHTSTTKS----LTLSV---------------------FQGILRPYHEKIIGRIAVSDLARRWQME-AL---- 179 (406)
T ss_dssp ESSEEEEECCCCCSH----HHHHH---------------------HHSTTHHHHTTCSEEEESSHHHHHHHHH-HH----
T ss_pred CCCEEEEEcCcchhh----hhHHH---------------------HHHHHHHHHhhCCEEEECCHHHHHHHHH-hc----
Confidence 789999999843210 00000 0112235678899999999988776643 22
Q ss_pred hHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecc-cccCCHHH
Q 009217 294 ESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSD-VSDVFLEN 372 (540)
Q Consensus 294 ~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl-~~~KG~~~ 372 (540)
+..++ +||||+|.+.|.+.... .+++. +.+.++|+||+ .+.||++.
T Consensus 180 ------~~~~~-vi~~~v~~~~~~~~~~~------------------------~~~~~--~~~~i~~~G~~~~~~Kg~~~ 226 (406)
T 2gek_A 180 ------GSDAV-EIPNGVDVASFADAPLL------------------------DGYPR--EGRTVLFLGRYDEPRKGMAV 226 (406)
T ss_dssp ------SSCEE-ECCCCBCHHHHHTCCCC------------------------TTCSC--SSCEEEEESCTTSGGGCHHH
T ss_pred ------CCCcE-EecCCCChhhcCCCchh------------------------hhccC--CCeEEEEEeeeCccccCHHH
Confidence 24678 99999998766543200 01111 24789999999 99999999
Q ss_pred HHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC-CCCCchHHH
Q 009217 373 LKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPL 449 (540)
Q Consensus 373 Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fglv~l 449 (540)
+++|+..+.+ ++++|+|+|.|+ . +.++++++++ .++|.|+|..+++++..+|+.||++|+||. .|+||++++
T Consensus 227 li~a~~~l~~~~~~~~l~i~G~~~---~-~~l~~~~~~~-~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~ 301 (406)
T 2gek_A 227 LLAALPKLVARFPDVEILIVGRGD---E-DELREQAGDL-AGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLV 301 (406)
T ss_dssp HHHHHHHHHTTSTTCEEEEESCSC---H-HHHHHHTGGG-GGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEEcCCc---H-HHHHHHHHhc-cCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHH
Confidence 9999999876 489999999774 2 6677777766 379999999998888999999999999996 999999999
Q ss_pred HHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHH
Q 009217 450 KALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCN 527 (540)
Q Consensus 450 EAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~ 527 (540)
|||+||+|||+++. ||+.|++.+ |.+|+++++.|+++|+++|..+++|++.+.++++++++ ++|||+.+++
T Consensus 302 Ea~a~G~PvI~~~~--~~~~e~i~~-----~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 374 (406)
T 2gek_A 302 EAMAAGTAVVASDL--DAFRRVLAD-----GDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSA 374 (406)
T ss_dssp HHHHHTCEEEECCC--HHHHHHHTT-----TTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHH
T ss_pred HHHHcCCCEEEecC--CcHHHHhcC-----CCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999998 999999873 55679999999999999999999999999999988865 6899999999
Q ss_pred HHHHHHHHHHh
Q 009217 528 DIHISAYTAIK 538 (540)
Q Consensus 528 ~~y~~lY~~l~ 538 (540)
+ +.++|+++.
T Consensus 375 ~-~~~~~~~~~ 384 (406)
T 2gek_A 375 Q-IMRVYETVS 384 (406)
T ss_dssp H-HHHHHHHHC
T ss_pred H-HHHHHHHHH
Confidence 9 599999874
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=6.5e-37 Score=317.86 Aligned_cols=359 Identities=11% Similarity=0.049 Sum_probs=228.1
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEE
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKI 131 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 131 (540)
.+.++|||++++..|.|....||.. .+.+|+++|+++||+|+|+++... ..... ...+
T Consensus 42 ~~~~~mrI~~v~~~~~p~~~~GG~~-~v~~la~~L~~~GheV~Vvt~~~~-~~~~~---~~~~----------------- 99 (413)
T 2x0d_A 42 SSIKGKRLNLLVPSINQEHMFGGIS-TALKLFEQFDNKKFKKRIILTDAT-PNPKD---LQSF----------------- 99 (413)
T ss_dssp CCCCSCEEEEEESCCCGGGCSHHHH-HHHHHHTTSCTTTCEEEEEESSCC-CCHHH---HGGG-----------------
T ss_pred CCCCCceEEEEeCCCCccccccHHH-HHHHHHHHHHHcCCceEEEEecCC-CChHH---HHhh-----------------
Confidence 3457799999999998853457775 588999999999999999998642 11110 0000
Q ss_pred EEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhh-c
Q 009217 132 WIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVK-Q 210 (540)
Q Consensus 132 ~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~-~ 210 (540)
.+.+...+.. ...+..+ +..+.... .. .+ . ..+|||||+|.|.++..+..+...... .
T Consensus 100 -----~~~~~~~~~~--~~~~~~~--i~~~~~~~-------~~---~~-~-~~~~Dvv~a~~~~~~~~~~~~~~~~~~~~ 158 (413)
T 2x0d_A 100 -----KSFKYVMPEE--DKDFALQ--IVPFNDRY-------NR---TI-P-VAKHDIFIATAWWTAYAAQRIVSWQSDTY 158 (413)
T ss_dssp -----TTSEECCTTC--CCCCSEE--EEECSCCT-------TC---CE-E-ECTTEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred -----hccceeeccC--Cccccce--eeeccccc-------cc---cc-c-CCCCCEEEEehHHHHHHHHHhhhhhhhhc
Confidence 0000000000 0000000 00000000 00 00 0 146999999998776654433111000 1
Q ss_pred CCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhcc--ceeeccccchhhhhhcc
Q 009217 211 GLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSN--KVVIVSSMHSKGRIIRS 288 (540)
Q Consensus 211 ~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~vi~vS~~~~~~~~~~~ 288 (540)
+....|.++.+|+.... .. +.. ....+.+..+..++ .++++|+..++.+...
T Consensus 159 ~~~~~~~~~~v~~~~~~-~~--------~~~----------------~~~~~~~~~~~~~~~~~vi~~S~~~~~~l~~~- 212 (413)
T 2x0d_A 159 GIPPNKILYIIQDFEPG-FY--------QWS----------------SQYVLAESTYKYRGPQIAVFNSELLKQYFNNK- 212 (413)
T ss_dssp TCCCCCEEEEECSCGGG-GS--------CSS----------------HHHHHHHHTTSCCSCEEEEEESHHHHHHHHHH-
T ss_pred ccccCcEEEEEeechhh-cC--------ccC----------------hHHHHHHHHhccCCceEEEEcCHHHHHHHHHc-
Confidence 12356888888864210 00 000 00011222334444 5788999998877642
Q ss_pred cCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecc-ccc
Q 009217 289 LSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSD-VSD 367 (540)
Q Consensus 289 ~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl-~~~ 367 (540)
|. +..++.+++||+|.+.|.+.. .+. ++.+.++++||+ .++
T Consensus 213 -g~--------~~~~~~~i~~g~d~~~~~~~~--------------------------~~~---~~~~~il~~gr~~~~~ 254 (413)
T 2x0d_A 213 -GY--------NFTDEYFFQPKINTTLKNYIN--------------------------DKR---QKEKIILVYGRPSVKR 254 (413)
T ss_dssp -TC--------CCSEEEEECCCCCHHHHTTTT--------------------------SCC---CCCSEEEEEECTTCGG
T ss_pred -CC--------CCCceEEeCCCcCchhhcccc--------------------------ccc---CCCCEEEEEecCchhc
Confidence 21 235789999999876443310 011 123568889996 689
Q ss_pred CCHHHHHHHHHHHHhc-----CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCC
Q 009217 368 VFLENLKAVVRGAKMR-----GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFH 441 (540)
Q Consensus 368 KG~~~Li~A~~~l~~~-----~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~ 441 (540)
||++.|++|++.+.+. +++|+++|+|+.. .+++. ++|+|+|..+.+++..+|++||+||+||.+
T Consensus 255 Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~----------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~ 324 (413)
T 2x0d_A 255 NAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD----------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMIS 324 (413)
T ss_dssp GCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC----------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSS
T ss_pred cCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh----------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCC
Confidence 9999999999998652 3899999987531 12332 689999999999999999999999999999
Q ss_pred CCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Q 009217 442 DPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFS 521 (540)
Q Consensus 442 E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fs 521 (540)
|+||++++||||||+|||++ . ||..|++. +|.+|+++++.|+++|+++|..+++|++++++ ......+.||
T Consensus 325 E~~g~~~lEAmA~G~PVV~~-~--~g~~e~v~-----~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~-~~~~~~~~~~ 395 (413)
T 2x0d_A 325 PHPSYPPLEMAHFGLRVITN-K--YENKDLSN-----WHSNIVSLEQLNPENIAETLVELCMSFNNRDV-DKKESSNMMF 395 (413)
T ss_dssp SSCCSHHHHHHHTTCEEEEE-C--BTTBCGGG-----TBTTEEEESSCSHHHHHHHHHHHHHHTC--------CCBSCGG
T ss_pred CCCCcHHHHHHhCCCcEEEe-C--CCcchhhh-----cCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH-hHHHHHHhCC
Confidence 99999999999999999984 5 67789987 35678999999999999999999999988877 2222237899
Q ss_pred hHHHHHHHHHHHHHHHh
Q 009217 522 WDADCNDIHISAYTAIK 538 (540)
Q Consensus 522 w~~~a~~~y~~lY~~l~ 538 (540)
|+.++++ .+.|+++.
T Consensus 396 W~~~~~~--~~~~~~l~ 410 (413)
T 2x0d_A 396 YINEFNE--FSFIKEIE 410 (413)
T ss_dssp GCCCC-----TTHHHHH
T ss_pred HHHHHHH--HHHHHHHH
Confidence 9999887 45777663
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=7.3e-34 Score=290.20 Aligned_cols=340 Identities=12% Similarity=0.000 Sum_probs=230.8
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEEE
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWIG 134 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (540)
++|||++++. ..||....+..|+++|+++||+|+++++..... ... +.
T Consensus 5 m~mkIl~~~~------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~---~~---------------------- 52 (364)
T 1f0k_A 5 QGKRLMVMAG------GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRME-ADL---VP---------------------- 52 (364)
T ss_dssp --CEEEEECC------SSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTH-HHH---GG----------------------
T ss_pred CCcEEEEEeC------CCccchhHHHHHHHHHHHcCCEEEEEecCCcch-hhh---cc----------------------
Confidence 3599999973 358999999999999999999999999764311 110 00
Q ss_pred EEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCC
Q 009217 135 VVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEG 214 (540)
Q Consensus 135 ~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~ 214 (540)
..|++++.+... .+ .+...........++......+.+.+++ .+|||||+|.....+.+.++.. ..+
T Consensus 53 -~~g~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~pDvv~~~~~~~~~~~~~~~~------~~~ 119 (364)
T 1f0k_A 53 -KHGIEIDFIRIS---GL-RGKGIKALIAAPLRIFNAWRQARAIMKA--YKPDVVLGMGGYVSGPGGLAAW------SLG 119 (364)
T ss_dssp -GGTCEEEECCCC---CC-TTCCHHHHHTCHHHHHHHHHHHHHHHHH--HCCSEEEECSSTTHHHHHHHHH------HTT
T ss_pred -ccCCceEEecCC---cc-CcCccHHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeCCcCchHHHHHHH------HcC
Confidence 025555555311 01 1100000000011111122334444544 5899999997443333333322 268
Q ss_pred CceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCch
Q 009217 215 TRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLE 294 (540)
Q Consensus 215 ~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~ 294 (540)
+|+|++.|+... + ...+...+.+|.++++|+.. +
T Consensus 120 ~p~v~~~~~~~~-~--------------------------------~~~~~~~~~~d~v~~~~~~~--------~----- 153 (364)
T 1f0k_A 120 IPVVLHEQNGIA-G--------------------------------LTNKWLAKIATKVMQAFPGA--------F----- 153 (364)
T ss_dssp CCEEEEECSSSC-C--------------------------------HHHHHHTTTCSEEEESSTTS--------S-----
T ss_pred CCEEEEecCCCC-c--------------------------------HHHHHHHHhCCEEEecChhh--------c-----
Confidence 999999996411 0 00112234678888776532 1
Q ss_pred HHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHH
Q 009217 295 STLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLK 374 (540)
Q Consensus 295 ~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li 374 (540)
+ ++.+|+||+|.+.|.+.. .+++++++.+ ...++++.|++.++||.+.++
T Consensus 154 -----~--~~~~i~n~v~~~~~~~~~----------------------~~~~~~~~~~-~~~il~~~g~~~~~k~~~~li 203 (364)
T 1f0k_A 154 -----P--NAEVVGNPVRTDVLALPL----------------------PQQRLAGREG-PVRVLVVGGSQGARILNQTMP 203 (364)
T ss_dssp -----S--SCEECCCCCCHHHHTSCC----------------------HHHHHTTCCS-SEEEEEECTTTCCHHHHHHHH
T ss_pred -----C--CceEeCCccchhhcccch----------------------hhhhcccCCC-CcEEEEEcCchHhHHHHHHHH
Confidence 2 578999999976554421 1345666543 223555667999999999999
Q ss_pred HHHHHHHhcCcE-EEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHh
Q 009217 375 AVVRGAKMRGIQ-FVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALK 453 (540)
Q Consensus 375 ~A~~~l~~~~~~-lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma 453 (540)
+|++.+.+ +++ ++++|+|+ .+.+++++++++.++|+|+|.. +++..+|+.||++|+||. |++++|||+
T Consensus 204 ~a~~~l~~-~~~~l~i~G~~~----~~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~sg----~~~~~EAma 272 (364)
T 1f0k_A 204 QVAAKLGD-SVTIWHQSGKGS----QQSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVVCRSG----ALTVSEIAA 272 (364)
T ss_dssp HHHHHHGG-GEEEEEECCTTC----HHHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEEECCC----HHHHHHHHH
T ss_pred HHHHHhcC-CcEEEEEcCCch----HHHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEEECCc----hHHHHHHHH
Confidence 99999866 788 56678664 3567777777755689988766 445689999999999994 899999999
Q ss_pred cCCceEEEecCCCccc--------cceeccCCccccceeecCCCC--HHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCC
Q 009217 454 YGAAPIAVTSSDIEFR--------HFAEFDHESTRFSRFISSTFG--NISLSQALEEIKNNPLSWKRKIKDAML--QDFS 521 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~--------e~v~~~~~~~g~~G~l~~~~d--~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fs 521 (540)
||+|+|+++. ||.+ ++++ .|. |+++++.| +++|+++|..+ |++.++++++++.+ +.|+
T Consensus 273 ~G~Pvi~~~~--~g~~~~q~~~~~~~~~-----~g~-g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~ 342 (364)
T 1f0k_A 273 AGLPALFVPF--QHKDRQQYWNALPLEK-----AGA-AKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDA 342 (364)
T ss_dssp HTCCEEECCC--CCTTCHHHHHHHHHHH-----TTS-EEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTH
T ss_pred hCCCEEEeeC--CCCchhHHHHHHHHHh-----CCc-EEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCH
Confidence 9999999988 7765 3443 343 79999888 99999999999 99999999998876 7899
Q ss_pred hHHHHHHHHHHHHHHH
Q 009217 522 WDADCNDIHISAYTAI 537 (540)
Q Consensus 522 w~~~a~~~y~~lY~~l 537 (540)
|++++++ ++++|++.
T Consensus 343 ~~~~~~~-~~~~y~~~ 357 (364)
T 1f0k_A 343 TERVANE-VSRVARAL 357 (364)
T ss_dssp HHHHHHH-HHHHHTTC
T ss_pred HHHHHHH-HHHHHHHH
Confidence 9999999 59999875
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=1.2e-34 Score=300.71 Aligned_cols=356 Identities=10% Similarity=0.061 Sum_probs=222.6
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeEEEE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANKIWI 133 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 133 (540)
.++|||++|+..++| ...+|.+. .+++.|+++| +|+|++..+.... ......+. .+. -.... .
T Consensus 12 ~~~MkIl~is~~~~p-~~~~~~~~---~l~~~l~~~G-~V~vi~~~~~~~~-~~~~~~~~---~~~--~~~~~------~ 74 (406)
T 2hy7_A 12 IRRPCYLVLSSHDFR-TPRRANIH---FITDQLALRG-TTRFFSLRYSRLS-RMKGDMRL---PLD--DTANT------V 74 (406)
T ss_dssp -CCSCEEEEESSCTT-SSSCCHHH---HHHHHHHHHS-CEEEEECSCBTTH-HHHTCTTG---GGG--GGTTS------E
T ss_pred CCCceEEEEecccCC-ChhhhhHh---HHHHHHHhCC-ceEEEEecccHHH-Hhhccchh---hhh--ccCcc------c
Confidence 446999999987345 23456554 4667788999 9999953321100 00000000 000 00000 1
Q ss_pred EEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHH--HHHHHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcC
Q 009217 134 GVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFER--FTYFSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQG 211 (540)
Q Consensus 134 ~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r--~~~~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~ 211 (540)
...+|+++++......+ +.... ........ +.++.......+++...++||||.++...+.+..+.+.
T Consensus 75 ~~~~gv~v~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~DvIh~~~~~~~~~~~~~~~------ 144 (406)
T 2hy7_A 75 VSHNGVDCYLWRTTVHP--FNTRR--SWLRPVEDAMFRWYAAHPPKQLLDWMRESDVIVFESGIAVAFIELAKR------ 144 (406)
T ss_dssp EEETTEEEEECCBSSCC--CCCCC--GGGHHHHHHHHHHHHHCCCHHHHHHHHHCSEEEEESSGGGGGHHHHHH------
T ss_pred eecCCeEEEeeccccCC--ccccc--hhhhccchhHHHHHHHhHHHHHHHHhcCCCEEEECCchHHHHHHHHHH------
Confidence 12578888765311000 00000 00000111 11122212222222112689999654333322222222
Q ss_pred CCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCC
Q 009217 212 LEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 291 (540)
Q Consensus 212 ~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 291 (540)
.++|+|+|+|+.+.. ....... ....+++..++.+|.|+++|+..++.+..
T Consensus 145 -~~~p~v~~~h~~~~~--------~~~~~~~---------------~~~~~~~~~~~~ad~vi~~S~~~~~~~~~----- 195 (406)
T 2hy7_A 145 -VNPAAKLVYRASDGL--------STINVAS---------------YIEREFDRVAPTLDVIALVSPAMAAEVVS----- 195 (406)
T ss_dssp -HCTTSEEEEEESSCH--------HHHTCCH---------------HHHHHHHHHGGGCSEEEESCGGGGGGCSC-----
T ss_pred -hCCCEEEEEeccchh--------hcccccH---------------HHHHHHHHHHHhCCEEEEcCHHHHHHHHh-----
Confidence 578999999974320 0000000 11245567788999999999988776532
Q ss_pred CchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHH
Q 009217 292 GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLE 371 (540)
Q Consensus 292 gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~ 371 (540)
.. ++.+||||+|.+.|.|... .+. ++.++++|+||+.++||+
T Consensus 196 --------~~-~i~vipngvd~~~f~~~~~---------------------------~~~-~~~~~i~~vGrl~~~Kg~- 237 (406)
T 2hy7_A 196 --------RD-NVFHVGHGVDHNLDQLGDP---------------------------SPY-AEGIHAVAVGSMLFDPEF- 237 (406)
T ss_dssp --------ST-TEEECCCCBCTTHHHHHCS---------------------------CSC-CSSEEEEEECCTTBCHHH-
T ss_pred --------cC-CEEEEcCCcChHhcCcccc---------------------------ccc-CCCcEEEEEeccccccCH-
Confidence 12 8999999999876644210 011 123789999999999997
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHH
Q 009217 372 NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLK 450 (540)
Q Consensus 372 ~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lE 450 (540)
++++.+. ..+++|+|+|+|+ +++++. ++|+|+|..+.+++..+|++||++|+||.+|+||++++|
T Consensus 238 --~~~l~~~-~~~~~l~ivG~g~-----------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lE 303 (406)
T 2hy7_A 238 --FVVASKA-FPQVTFHVIGSGM-----------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLAD 303 (406)
T ss_dssp --HHHHHHH-CTTEEEEEESCSS-----------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHH
T ss_pred --HHHHHHh-CCCeEEEEEeCch-----------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHH
Confidence 4433322 2589999999774 233332 799999999988899999999999999999999999999
Q ss_pred HH-------hcCCceEEEecCCCccccceeccCCccccceee-cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCh
Q 009217 451 AL-------KYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFI-SSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSW 522 (540)
Q Consensus 451 Am-------a~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l-~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw 522 (540)
|| |||+|||+|+. +. +|.+|++ +++.|+++|+++|.++++|++. ...++|||
T Consensus 304 Am~Kl~eYla~G~PVIas~~--------v~-----~~~~G~l~v~~~d~~~la~ai~~ll~~~~~-------~~~~~~sw 363 (406)
T 2hy7_A 304 SSMKLLQYDFFGLPAVCPNA--------VV-----GPYKSRFGYTPGNADSVIAAITQALEAPRV-------RYRQCLNW 363 (406)
T ss_dssp HCHHHHHHHHHTCCEEEEGG--------GT-----CSCSSEEEECTTCHHHHHHHHHHHHHCCCC-------CCSCCCBH
T ss_pred HHHHHHHHhhCCCcEEEehh--------cc-----cCcceEEEeCCCCHHHHHHHHHHHHhCcch-------hhhhcCCH
Confidence 99 99999999863 32 2455789 9999999999999999998871 23488999
Q ss_pred HHHHHHHHHHH--HHHHh
Q 009217 523 DADCNDIHISA--YTAIK 538 (540)
Q Consensus 523 ~~~a~~~y~~l--Y~~l~ 538 (540)
+.++++ ++++ |+.++
T Consensus 364 ~~~a~~-~~~~~~y~~~~ 380 (406)
T 2hy7_A 364 SDTTDR-VLDPRAYPETR 380 (406)
T ss_dssp HHHHHH-HHCGGGSGGGB
T ss_pred HHHHHH-HHHhhcccccC
Confidence 999999 5999 88763
No 19
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=100.00 E-value=2.6e-32 Score=292.38 Aligned_cols=447 Identities=15% Similarity=0.121 Sum_probs=311.1
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEeecCCCC--ccccccC-----------------cceeeeeeeeecCCeeeeeEE
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVILPKYACM--NLDGVQG-----------------LREIKAECYSYFNGQLHANKI 131 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~--~~~~~~~-----------------l~~~~~~~~~~~~~~~~~~~~ 131 (540)
..||+|+......+.++..|....-+.-.|... ...-..+ +......+.+.|+|.....-.
T Consensus 112 gnGGLGrLAac~ldS~a~l~~p~~G~Gl~Y~~G~F~Q~i~dG~Q~E~~d~wl~~g~pwe~~r~~~~~~V~f~g~~v~a~~ 191 (796)
T 2c4m_A 112 GNGGLGRLAACFLDSAVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCFDDMKTRAIP 191 (796)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCEEEEEECCSSCSCEEEEETTEEEEECCCSSSSCCTTSEECGGGCEEEEETTEEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHhCCCCeEEEeecccCCCeEEEeeCCEEEeeCCccccCCCceeEecCCcEEEEEeCCEEEEEEE
Confidence 689999999999999999999998887665431 0000000 011112344556665332211
Q ss_pred EEEEEcC--------eeEEEEccCCCCCC----CCCC-----------------CCCCCCCh------hHHH---HHHHH
Q 009217 132 WIGVVSG--------IGVTFIQPLHYSSF----FNRE-----------------SVYGYSDD------FERF---TYFSR 173 (540)
Q Consensus 132 ~~~~~~g--------v~v~~i~~~~~~~~----~~~~-----------------~~y~~~~~------~~r~---~~~~~ 173 (540)
+...+.| +++...++. ..| |+.+ .+ |+++ ..|. .+|+.
T Consensus 192 yd~pi~gy~~~~~n~lrlW~a~~~--~~f~l~~fn~gdy~~a~~~~~~~~~It~~L--Yp~D~~~~Gk~lRL~Qe~ff~~ 267 (796)
T 2c4m_A 192 YDMPITGYGTHNVGTLRLWKAEPW--EEFDYDAFNAQRFTDAIIERERVSDICRVL--YPNDTTYEGKKLRVRQQYFFTS 267 (796)
T ss_dssp EEEEECCTTCCCCEEEEEEEEEES--SSSCHHHHHTTCHHHHHHHHHHHHHHHHSS--SCCCSSHHHHHHHHHHHHHHHH
T ss_pred EeccccCcCCCceEEEEEEecccc--cccchhhccCcchhhhhhchHhhhchhhcC--cCCCCCcchHHHHHHhHHHHHH
Confidence 1111222 112222211 111 1121 13 3443 3443 67788
Q ss_pred HHHHH-HHHc-----CC----CCCEEEEcCCchhhHHH-HHHHHHhhcCC--------CCCceEEEecCCCCCCC--CCh
Q 009217 174 ASLDY-IVKS-----RK----QPDVLHIHNWETAIVGP-LFWDIFVKQGL--------EGTRILLSCHNLNSLCL--EHP 232 (540)
Q Consensus 174 ~~~~~-~~~~-----~~----~pDIIH~h~~~~~~~~~-~~~~~~~~~~~--------~~~p~V~T~H~~~~~~~--~~~ 232 (540)
+.++. +++. .+ +||+||+|+||++++++ +++..+...++ .+..+|+|.|++.++|. +|.
T Consensus 268 a~lq~ilr~~~~~~~~l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~ 347 (796)
T 2c4m_A 268 ASLQAMIQDHLAHHKDLSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDE 347 (796)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEH
T ss_pred HHHHHHHHHHHHhCCChhhcCCCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCH
Confidence 88875 4422 12 69999999999999988 55433211110 35689999999999886 444
Q ss_pred hhhhh-c--------CCCccccC----CCc------c--ccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCC
Q 009217 233 DKLAL-C--------GLDPARLH----RPD------R--LQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSH 291 (540)
Q Consensus 233 ~~l~~-~--------g~~~~~~~----~~~------~--~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~ 291 (540)
..+.. + +++...+. .+. + +... ..+++.+.++..|+.|.+||+.+++.++.+.++
T Consensus 348 ~l~~~~lpr~~~ii~~I~~~~~~~~~~~~~~~~~~~~~~i~~~---~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~- 423 (796)
T 2c4m_A 348 QIFQQLFWRVWEIIAEIDRRFRLERAADGLDEETINRMAPIQH---GTVHMAWIACYAAYSINGVAALHTEIIKAETLA- 423 (796)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHCSEET---TEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTH-
T ss_pred HHHHHHhHHHHHHHcCcCHHHHHHHHhcCCcHhhhhcccceeC---CcccHHHHHHHhcCceeeccHHHHHHhhhhhhh-
Confidence 33211 0 11110000 000 0 1111 368999999999999999999999988866554
Q ss_pred CchHHhhhccCceEEeccCCCCCCC----CCCCCcccccccC-----------------ccc-------ccCcHHHHHH-
Q 009217 292 GLESTLAIHQDKLLVAPCGFDSSTW----DPSNDKFLTENYC-----------------AED-------MKGKTVCKVT- 342 (540)
Q Consensus 292 gl~~~l~~~~~ki~vI~nGvd~~~~----~p~~~~~l~~~~~-----------------~~~-------~~~k~~~~~~- 342 (540)
.++...+.|+..|.||||...| +|..+..+...+. ++| ++.|..+|..
T Consensus 424 ---~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L 500 (796)
T 2c4m_A 424 ---DWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDF 500 (796)
T ss_dssp ---HHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 3444567899999999999999 8888877777666 566 3678888888
Q ss_pred ---HHHHhCCCCCCCceEEEEEecccccCCHHH-HHHHHHHHHh---------cCcEEEEEecCCChhHHHH------HH
Q 009217 343 ---LQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRGAKM---------RGIQFVFTGTNKLPSASRA------LV 403 (540)
Q Consensus 343 ---lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~-Li~A~~~l~~---------~~~~lvi~G~g~~~~~~~~------l~ 403 (540)
+++++|+..+++.++++++.|++.+||+++ ++..+.++.+ .+++|++.|.+. |.+... +.
T Consensus 501 ~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~-P~y~~aK~iIk~i~ 579 (796)
T 2c4m_A 501 AEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAA-PGYVRAKAIIKLIN 579 (796)
T ss_dssp HHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCC-HhHHHHHHHHHHHH
Confidence 489999998888999999999999999999 8999887764 368999999764 555444 66
Q ss_pred HHHH------HhCCC--cEEEEEecChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCcccccee
Q 009217 404 SFQE------ELKDG--IVIFVDSYDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 473 (540)
Q Consensus 404 ~l~~------~~~~~--~v~f~~~~~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~ 473 (540)
.+++ +++ + +|.|+..|+.+..+.++++||++++||. +||||++.|-||.+|+++|.+-. |...|+.+
T Consensus 580 ~va~~in~dp~~~-~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLD--GanvEi~e 656 (796)
T 2c4m_A 580 SIADLVNNDPEVS-PLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMD--GANVEIVD 656 (796)
T ss_dssp HHHHHHHTCTTTT-TTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESS--THHHHHHH
T ss_pred HHHHHhccccccC-CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccC--CeEeehhh
Confidence 6776 443 6 8999999999999999999999999999 99999999999999999998877 88888764
Q ss_pred ccCCccccceeecCC--CCHHHHHH---HHHHHhcCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q 009217 474 FDHESTRFSRFISST--FGNISLSQ---ALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 474 ~~~~~~g~~G~l~~~--~d~~~la~---ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~l~ 538 (540)
... ..|||+|.. .++.++.. +...+.++| .++++..+++...|||+.. .+ |..+|+.+.
T Consensus 657 ~vG---~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~-~~~~vvd~~~~g~fs~~~~-~~-y~~Ly~~L~ 720 (796)
T 2c4m_A 657 SVG---EENAYIFGARVEELPALRESYKPYELYETVP-GLKRALDALDNGTLNDNNS-GL-FYDLKHSLI 720 (796)
T ss_dssp HHC---GGGSEEESCCTTTHHHHHHTCCHHHHHHHST-THHHHHHTTTSSSSCCTTC-CH-HHHHHHHHH
T ss_pred hcC---CCcEEEecCchhhHHHHHHhhChHHHhhcCH-HHHHHHHHHHcCCCCCCCH-HH-HHHHHHHHH
Confidence 311 246799976 66666654 455555666 5888888888899999887 67 699999874
No 20
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=100.00 E-value=3.6e-32 Score=291.28 Aligned_cols=351 Identities=15% Similarity=0.096 Sum_probs=265.4
Q ss_pred HHHHHHHHHH-HHHc-----CC----CCCEEEEcCCchhhHHH-HHHHHHhhcC--------CCCCceEEEecCCCCCCC
Q 009217 169 TYFSRASLDY-IVKS-----RK----QPDVLHIHNWETAIVGP-LFWDIFVKQG--------LEGTRILLSCHNLNSLCL 229 (540)
Q Consensus 169 ~~~~~~~~~~-~~~~-----~~----~pDIIH~h~~~~~~~~~-~~~~~~~~~~--------~~~~p~V~T~H~~~~~~~ 229 (540)
.+|+.+.++. +++. .. +||+||+|+||++++++ +++..+...+ ..+..+|+|.|++.++|.
T Consensus 273 ~ff~~a~lq~ilr~~~~~~~~~~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egl 352 (796)
T 1l5w_A 273 YFQCACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEAL 352 (796)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGS
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhcCCccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhh
Confidence 6778888876 4422 12 69999999999999988 5543321101 146789999999998885
Q ss_pred --CChhhhhh-c--------CCCc--------------cccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhh
Q 009217 230 --EHPDKLAL-C--------GLDP--------------ARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGR 284 (540)
Q Consensus 230 --~~~~~l~~-~--------g~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~ 284 (540)
+|...+.. + +++. ..+. ...+... ..+++.+.++..|+.|.+||+.+++.+
T Consensus 353 e~wp~~l~~~~lpr~~~ii~~I~~~f~~~~~~~~~~~~~~~~-~~~i~~~---~~vnMa~lai~~S~~VNgVS~lH~e~i 428 (796)
T 1l5w_A 353 ERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWA-KLAVVHD---KQVHMANLCVVGGFAVNGVAALHSDLV 428 (796)
T ss_dssp CEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH-HHCSEET---TEEEHHHHHHHHSSEEEESSHHHHHHH
T ss_pred hcCCHHHHHHHhHHHHHHHhccCHHHHHHHHHhcCCcHHHHh-hhhcccC---CcccHHHHHHHhcCccccccHHHHHHH
Confidence 44332211 0 0000 0000 0011111 368999999999999999999999988
Q ss_pred hhcccCCCchHHhhhccCceEEeccCCCCCCC----CCCCCcccccccC----------------ccc-------ccCcH
Q 009217 285 IIRSLSHGLESTLAIHQDKLLVAPCGFDSSTW----DPSNDKFLTENYC----------------AED-------MKGKT 337 (540)
Q Consensus 285 ~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~----~p~~~~~l~~~~~----------------~~~-------~~~k~ 337 (540)
+.+.++ .++...+.|+..|.||||...| +|..+..+...+. ++| ++.|.
T Consensus 429 k~~~f~----~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~ 504 (796)
T 1l5w_A 429 VKDLFP----EYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQ 504 (796)
T ss_dssp HHTTSH----HHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHH
T ss_pred HhHHhh----HHHHhCccccCCCcCCCcHHHhhcccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 766554 3455567899999999999999 8888888777776 554 36788
Q ss_pred HHHHH----HHHHhCCCCCCCceEEEEEecccccCCHHH-HHHHHHHHHh---------cCcEEEEEecCCChhHHHH--
Q 009217 338 VCKVT----LQQQLGLSKDASTIVVGCIFSDVSDVFLEN-LKAVVRGAKM---------RGIQFVFTGTNKLPSASRA-- 401 (540)
Q Consensus 338 ~~~~~----lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~-Li~A~~~l~~---------~~~~lvi~G~g~~~~~~~~-- 401 (540)
.+|.. +++++|+..+++.++++++.|++.+||+++ ++.++.++.+ .+++|++.|.+. |.+...
T Consensus 505 ~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~-P~y~~aK~ 583 (796)
T 1l5w_A 505 ANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAA-PGYYLAKN 583 (796)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCC-hhHHHHHH
Confidence 88888 489999998888999999999999999999 8999888765 479999999764 545444
Q ss_pred ----HHHHHH------HhCCC--cEEEEEecChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCc
Q 009217 402 ----LVSFQE------ELKDG--IVIFVDSYDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIE 467 (540)
Q Consensus 402 ----l~~l~~------~~~~~--~v~f~~~~~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg 467 (540)
+..+++ +++ + +|.|+..|+.+..+.++++||++++||. +||||++.|-||.+|+++|.+-. |.
T Consensus 584 iIk~i~~va~~in~Dp~~~-~~lKVvfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLD--Ga 660 (796)
T 1l5w_A 584 IIFAINKVADVINNDPLVG-DKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLD--GA 660 (796)
T ss_dssp HHHHHHHHHHHHHTCTTTG-GGEEEEECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSC--TT
T ss_pred HHHHHHHHHHHhccccccC-CceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcC--Ce
Confidence 666666 443 5 7999999999999999999999999999 99999999999999999998877 88
Q ss_pred cccceeccCCccccceeecCCCCHHHHH---H----HHHHHhcCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q 009217 468 FRHFAEFDHESTRFSRFISSTFGNISLS---Q----ALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 468 ~~e~v~~~~~~~g~~G~l~~~~d~~~la---~----ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~l~ 538 (540)
..|+.+... ..|||+|.. +++++. . +...+.++| .++++..+++...|||+.. .+ |..+|+.+.
T Consensus 661 nvEi~e~vG---~~NgF~FG~-~~~ev~~l~~~~y~a~~~y~~~~-~~~~vvd~~~~g~fs~~~~-~~-y~~Ly~~L~ 731 (796)
T 1l5w_A 661 NVEIAEKVG---EENIFIFGH-TVEQVKAILAKGYDPVKWRKKDK-VLDAVLKELESGKYSDGDK-HA-FDQMLHSIG 731 (796)
T ss_dssp HHHHHHHHC---GGGSEECSC-CHHHHHHHHHHCCCHHHHHHHCH-HHHHHHHHHHHTTTTTTCT-TT-THHHHHHTS
T ss_pred eeehhhccC---CCcEEEecC-CHHHHHHHHHcccCHHHHhhcCH-HHHHHHHHHHcCCCCCCcH-HH-HHHHHHHHh
Confidence 888754311 246799977 665554 2 445555677 5888888888899999885 67 699999874
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=100.00 E-value=2e-31 Score=280.28 Aligned_cols=313 Identities=12% Similarity=0.037 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHcCCCCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccc-----c
Q 009217 171 FSRASLDYIVKSRKQPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPAR-----L 245 (540)
Q Consensus 171 ~~~~~~~~~~~~~~~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~-----~ 245 (540)
+.+...+.+.+.-..+||||+|+|+..+++.+++.. ..++|+++++|... |...+. ..+++.. +
T Consensus 109 vN~~fa~~l~~~~~~~DiV~vHdyhl~~l~~~lr~~-----~~~~~i~~~~H~pf-----p~~~~~-~~lp~~~~il~~l 177 (482)
T 1uqt_A 109 VNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKR-----GVNNRIGFFLHIPF-----PTPEIF-NALPTYDTLLEQL 177 (482)
T ss_dssp HHHHHHHHHGGGCCTTCEEEEESGGGTTHHHHHHHT-----TCCSCEEEECCSCC-----CCHHHH-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECchHHHHHHHHHHh-----CCCCcEEEEEcCCC-----CCHHHH-hhCccHHHHHHhh
Confidence 334444444443346799999999988887777542 25799999999731 111110 0111100 0
Q ss_pred CCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccc
Q 009217 246 HRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLT 325 (540)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~ 325 (540)
...+...+ ....+.+..+..++.++.+|......+ ...| +..++.+||||||.+.|.+....
T Consensus 178 l~~d~i~f----~~~~~~~~f~~~~~~~l~~~~~~~~~~--~~~g---------~~~~v~vip~GID~~~f~~~~~~--- 239 (482)
T 1uqt_A 178 CDYDLLGF----QTENDRLAFLDCLSNLTRVTTRSAKSH--TAWG---------KAFRTEVYPIGIEPKEIAKQAAG--- 239 (482)
T ss_dssp TTSSEEEE----SSHHHHHHHHHHHHHHSCEEEETTTEE--EETT---------EEEEEEECCCCCCHHHHHHHHHS---
T ss_pred hccCeEEE----ECHHHHHHHHHHHHHHhCCccccCCeE--EECC---------eEEEEEEEeccCCHHHHHHHhcC---
Confidence 00000000 001223333444555555554332211 1111 35689999999998777542100
Q ss_pred cccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhc------CcEEEEEecCC---Ch
Q 009217 326 ENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMR------GIQFVFTGTNK---LP 396 (540)
Q Consensus 326 ~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~------~~~lvi~G~g~---~~ 396 (540)
..... +..+|++++ +.++++++||+++.||++.+++|++++++. +++|+++|.+. .+
T Consensus 240 --------~~~~~-~~~lr~~~~-----~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~ 305 (482)
T 1uqt_A 240 --------PLPPK-LAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQ 305 (482)
T ss_dssp --------CCCHH-HHHHHHHTT-----TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSH
T ss_pred --------cchHH-HHHHHHHhC-----CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchH
Confidence 00111 456788876 248999999999999999999999998752 47899998531 12
Q ss_pred ---hHHHHHHHHHHHhCC-------CcEEEE-EecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCC-----ceEE
Q 009217 397 ---SASRALVSFQEELKD-------GIVIFV-DSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGA-----APIA 460 (540)
Q Consensus 397 ---~~~~~l~~l~~~~~~-------~~v~f~-~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~-----pvI~ 460 (540)
.+.+++++++.+++. ..|+|+ +.++.+++..+|++||+||+||.+|+||+|++||||||+ |+|+
T Consensus 306 ~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~ 385 (482)
T 1uqt_A 306 AYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL 385 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEE
Confidence 245566666655421 247765 556888999999999999999999999999999999997 8999
Q ss_pred EecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHH
Q 009217 461 VTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN-PLSWKRKIKDAML--QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 461 ~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~-~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l 537 (540)
|+. +|..+.+. + |++++|.|+++++++|.+++++ ++.++++++++++ ..|||+..+++ |++.|+++
T Consensus 386 S~~--~G~~~~l~-----~---g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~-~l~~l~~~ 454 (482)
T 1uqt_A 386 SQF--AGAANELT-----S---ALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQEC-FISDLKQI 454 (482)
T ss_dssp ETT--BGGGGTCT-----T---SEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHH-HHHHHHHS
T ss_pred ECC--CCCHHHhC-----C---eEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhc
Confidence 987 77777763 3 5899999999999999999984 6778888877765 67999999999 59999875
No 22
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.98 E-value=3.9e-31 Score=286.48 Aligned_cols=331 Identities=11% Similarity=0.062 Sum_probs=233.2
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHH--HHHcCCeEEEEeecCCCCccccccCcceeeeeeeeecCCeeeeeE
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGA--LQRKGHLVEVILPKYACMNLDGVQGLREIKAECYSYFNGQLHANK 130 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~--L~~~Gh~V~vi~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 130 (540)
..++|||++++..+.+ ||++.++.+|.+. +.+.||+|+|+++.....+ .....++.
T Consensus 202 ~~~~~rI~~~~~~~~~----~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~-~~~~~~~~----------------- 259 (568)
T 2vsy_A 202 SKGPLRVGFVSNGFGA----HPTGLLTVALFEALQRRQPDLQMHLFATSGDDGS-TLRTRLAQ----------------- 259 (568)
T ss_dssp SSSCEEEEEEESCSSS----SHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSC-HHHHHHHH-----------------
T ss_pred CCCCeEEEEECccccc----ChHHHHHHHHHhhccCCcccEEEEEEECCCCCcc-HHHHHHHh-----------------
Confidence 3567999999987643 7899999999999 7888999999997532111 00000110
Q ss_pred EEEEEEcCeeEEEEccCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHcCCCCCEEEEcCCch--hhHHHHHHHHHh
Q 009217 131 IWIGVVSGIGVTFIQPLHYSSFFNRESVYGYSDDFERFTYFSRASLDYIVKSRKQPDVLHIHNWET--AIVGPLFWDIFV 208 (540)
Q Consensus 131 ~~~~~~~gv~v~~i~~~~~~~~~~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~pDIIH~h~~~~--~~~~~~~~~~~~ 208 (540)
.+ .++.+. .. . . ..+.+.+++ .+|||||.++.++ ..++.+.
T Consensus 260 ------~~-~~~~~~--------------~~-~-~-------~~l~~~i~~--~~~Div~~~~~~~~~~~~~~~~----- 302 (568)
T 2vsy_A 260 ------AS-TLHDVT--------------AL-G-H-------LATAKHIRH--HGIDLLFDLRGWGGGGRPEVFA----- 302 (568)
T ss_dssp ------TS-EEEECT--------------TC-C-H-------HHHHHHHHH--TTCSEEEECSSCTTCSSCHHHH-----
T ss_pred ------cC-eEEECC--------------CC-C-H-------HHHHHHHHh--CCCCEEEECCCCCCcchHHHHh-----
Confidence 01 111110 00 0 0 233445554 6899999876433 2222221
Q ss_pred hcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcc
Q 009217 209 KQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRS 288 (540)
Q Consensus 209 ~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~ 288 (540)
....|+++|+|+..... ++. .+. ...+|.++++|+...+
T Consensus 303 ---~~~~~~~~~~~~~~~~~----------~~~--------~~~--------------~~~~d~~i~~s~~~~~------ 341 (568)
T 2vsy_A 303 ---LRPAPVQVNWLAYPGTS----------GAP--------WMD--------------YVLGDAFALPPALEPF------ 341 (568)
T ss_dssp ---TCCSSEEEEESSSSSCC----------CCT--------TCC--------------EEEECTTTSCTTTGGG------
T ss_pred ---cCCCceeEeeecCCccc----------CCC--------Cce--------------EEEECCCcCCcccccC------
Confidence 14578999998632110 110 000 1237889999875432
Q ss_pred cCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccC
Q 009217 289 LSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDV 368 (540)
Q Consensus 289 ~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~K 368 (540)
+ .+++.+|||.++.....+.. .+...|+++|++.+ .+++++||+.+ |
T Consensus 342 ~-----------~~~i~~ipn~~~~~~~~~~~------------------~~~~~r~~~~~~~~---~~v~~~g~~~~-K 388 (568)
T 2vsy_A 342 Y-----------SEHVLRLQGAFQPSDTSRVV------------------AEPPSRTQCGLPEQ---GVVLCCFNNSY-K 388 (568)
T ss_dssp C-----------SSEEEECSSCSCCCCTTCCC------------------CCCCCTGGGTCCTT---SCEEEECCCGG-G
T ss_pred C-----------cceeEcCCCcCCCCCCCCCC------------------CCCCCccccCCCCC---CEEEEeCCccc-c
Confidence 1 36899999954432111110 01113566777643 34569999999 9
Q ss_pred CHHHHHHHHHHHHh--cCcEEEEEe-cCCChhHHHHHHHHHHHhCC--CcEEEEEecChHHHHHHHhcCCEEEECCCCCC
Q 009217 369 FLENLKAVVRGAKM--RGIQFVFTG-TNKLPSASRALVSFQEELKD--GIVIFVDSYDDALLHLIFSGSDIILCHSFHDP 443 (540)
Q Consensus 369 G~~~Li~A~~~l~~--~~~~lvi~G-~g~~~~~~~~l~~l~~~~~~--~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~ 443 (540)
|++.+++|+..+.+ ++++|+|+| +|+ ..+.+++++++++. ++|+|+|..+.+++..+|+.||+||+||.+ +
T Consensus 389 ~~~~li~a~~~l~~~~~~~~l~i~G~~g~---~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~ 464 (568)
T 2vsy_A 389 LNPQSMARMLAVLREVPDSVLWLLSGPGE---ADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-N 464 (568)
T ss_dssp CCHHHHHHHHHHHHHCTTCEEEEECCSTT---HHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-C
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCCHH---HHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-C
Confidence 99999999999865 589999999 553 57788888888764 689999998888888999999999999999 9
Q ss_pred CchHHHHHHhcCCceEE-------EecCCC-------ccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHH
Q 009217 444 LLQVPLKALKYGAAPIA-------VTSSDI-------EFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWK 509 (540)
Q Consensus 444 fglv~lEAma~G~pvI~-------~~~~~g-------g~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~ 509 (540)
||++++|||+||+|||+ |++ | |++|+|.+ |+++++++|..+++|++.++
T Consensus 465 ~g~~~lEAma~G~Pvv~~~g~~~~s~~--~~~~l~~~g~~e~v~~---------------~~~~la~~i~~l~~~~~~~~ 527 (568)
T 2vsy_A 465 AHTTASDALWTGCPVLTTPGETFAARV--AGSLNHHLGLDEMNVA---------------DDAAFVAKAVALASDPAALT 527 (568)
T ss_dssp CSHHHHHHHHTTCCEEBCCCSSGGGSH--HHHHHHHHTCGGGBCS---------------SHHHHHHHHHHHHHCHHHHH
T ss_pred CcHHHHHHHhCCCCEEeccCCCchHHH--HHHHHHHCCChhhhcC---------------CHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999 888 8 77777641 78899999999999999999
Q ss_pred HHHHHHHh-----ccCChHHHHHHHHHHHHHHHh
Q 009217 510 RKIKDAML-----QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 510 ~~~~~a~~-----~~fsw~~~a~~~y~~lY~~l~ 538 (540)
++++++++ +.|||+.++++ ++++|+++.
T Consensus 528 ~~~~~~~~~~~~~~~f~~~~~~~~-~~~~y~~~~ 560 (568)
T 2vsy_A 528 ALHARVDVLRRASGVFHMDGFADD-FGALLQALA 560 (568)
T ss_dssp HHHHHHHHHHHHSSTTCHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHH-HHHHHHHHH
Confidence 99987753 67999999999 599999874
No 23
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.97 E-value=1.2e-30 Score=267.20 Aligned_cols=280 Identities=10% Similarity=0.073 Sum_probs=194.2
Q ss_pred HHHHHHHHcCCCCCEEEEcCC-chhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCcccc
Q 009217 174 ASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQ 252 (540)
Q Consensus 174 ~~~~~~~~~~~~pDIIH~h~~-~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 252 (540)
.+.+++++ .+|||||+|.. ...+.+.++.. ..++|+|++.|+...... ..
T Consensus 86 ~l~~~l~~--~~pDvv~~~~~~~~~~~~~~~~~------~~~ip~v~~~~~~~~~~~------------~~--------- 136 (375)
T 3beo_A 86 GLDKVMKE--AKPDIVLVHGDTTTTFIASLAAF------YNQIPVGHVEAGLRTWDK------------YS--------- 136 (375)
T ss_dssp HHHHHHHH--HCCSEEEEETTSHHHHHHHHHHH------HTTCCEEEESCCCCCSCT------------TS---------
T ss_pred HHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH------HHCCCEEEEecccccccc------------cC---------
Confidence 34445554 58999999863 33333333322 268999988775411000 00
Q ss_pred CCCCCccchhhhHHH-hhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC-CCCCCCCCCCCcccccccCc
Q 009217 253 DNTKTHLVNILKGGV-VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG-FDSSTWDPSNDKFLTENYCA 330 (540)
Q Consensus 253 ~~~~~~~~~~~~~~~-~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG-vd~~~~~p~~~~~l~~~~~~ 330 (540)
.+ ...+.+..+ +.+|.++++|+..++.+.. .| + +++++.+|+|| +|...+.+...
T Consensus 137 ~~----~~~~~~~~~~~~~d~ii~~s~~~~~~~~~--~g--~------~~~~i~vi~n~~~d~~~~~~~~~--------- 193 (375)
T 3beo_A 137 PY----PEEMNRQLTGVMADLHFSPTAKSATNLQK--EN--K------DESRIFITGNTAIDALKTTVKET--------- 193 (375)
T ss_dssp ST----THHHHHHHHHHHCSEEEESSHHHHHHHHH--TT--C------CGGGEEECCCHHHHHHHHHCCSS---------
T ss_pred CC----hhHhhhhHHhhhhheeeCCCHHHHHHHHH--cC--C------CcccEEEECChhHhhhhhhhhhh---------
Confidence 00 011223333 4599999999988776643 12 1 45789999999 78654433210
Q ss_pred ccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccccc-CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHH
Q 009217 331 EDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSD-VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQE 407 (540)
Q Consensus 331 ~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~-KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~ 407 (540)
.+..+++++ + ++..+++++||+.+. ||++.|++|+..+.+ +++++++ |.|+++.+.+.++++..
T Consensus 194 --------~~~~~~~~~--~--~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~-~~g~~~~~~~~~~~~~~ 260 (375)
T 3beo_A 194 --------YSHPVLEKL--G--NNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVY-PVHMNPVVRETANDILG 260 (375)
T ss_dssp --------CCCHHHHTT--T--TSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEE-ECCSCHHHHHHHHHHHT
T ss_pred --------hhHHHHHhc--c--CCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEE-eCCCCHHHHHHHHHHhh
Confidence 011233333 2 234567899999886 999999999999875 3788655 54654334444544422
Q ss_pred HhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe-cCCCccccceeccCCccccceeec
Q 009217 408 ELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT-SSDIEFRHFAEFDHESTRFSRFIS 486 (540)
Q Consensus 408 ~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~-~~~gg~~e~v~~~~~~~g~~G~l~ 486 (540)
. .++|+|++..+..++..+|+.||++|+|| |.+++|||+||+|||+++ . ||.+|++. +| +|+++
T Consensus 261 ~--~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~~~~--~~~~e~v~-----~g-~g~~v 325 (375)
T 3beo_A 261 D--YGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVLRDT--TERPEGIE-----AG-TLKLA 325 (375)
T ss_dssp T--CTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEECSSC--CSCHHHHH-----TT-SEEEC
T ss_pred c--cCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEecCC--CCCceeec-----CC-ceEEc
Confidence 1 26899988888778889999999999999 778999999999999984 4 78899886 35 67999
Q ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHH
Q 009217 487 STFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYT 535 (540)
Q Consensus 487 ~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~ 535 (540)
++ |+++|+++|.++++|++.+++|++++.+ +.|+|+++++++ +++++
T Consensus 326 ~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ 374 (375)
T 3beo_A 326 GT-DEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAI-LKHFN 374 (375)
T ss_dssp CS-CHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHH-HHHTT
T ss_pred CC-CHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHH-HHHhh
Confidence 76 9999999999999999999999987755 689999999984 77653
No 24
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.97 E-value=1e-30 Score=268.91 Aligned_cols=293 Identities=10% Similarity=0.050 Sum_probs=201.2
Q ss_pred HHHHHHHHHcCCCCCEEEEcCC-chhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 173 RASLDYIVKSRKQPDVLHIHNW-ETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~pDIIH~h~~-~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
..+.+++++ .+|||||+|+. ...+.+.++.. ..++|+|++.|+...... +.
T Consensus 76 ~~l~~~l~~--~~pDvv~~~~~~~~~~~~~~~a~------~~~ip~v~~~~~~~~~~~------------~~-------- 127 (384)
T 1vgv_A 76 EGLKPILAE--FKPDVVLVHGDTTTTLATSLAAF------YQRIPVGHVEAGLRTGDL------------YS-------- 127 (384)
T ss_dssp HHHHHHHHH--HCCSEEEEETTCHHHHHHHHHHH------TTTCCEEEESCCCCCSCT------------TS--------
T ss_pred HHHHHHHHH--hCCCEEEEeCCchHHHHHHHHHH------HHCCCEEEEecccccccc------------cC--------
Confidence 444555554 58999999974 44443333322 368999999997531000 00
Q ss_pred cCCCCCccchhhhHH-HhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCC-CCCCCCCCCCcccccccC
Q 009217 252 QDNTKTHLVNILKGG-VVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGF-DSSTWDPSNDKFLTENYC 329 (540)
Q Consensus 252 ~~~~~~~~~~~~~~~-~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGv-d~~~~~p~~~~~l~~~~~ 329 (540)
.+ .....+.. .+.+|.++++|+..++.+.. .| + +++++.+|+||+ |...+.+..
T Consensus 128 -~~----~~~~~~~~~~~~~d~ii~~s~~~~~~l~~--~g--~------~~~~i~vi~n~~~d~~~~~~~~--------- 183 (384)
T 1vgv_A 128 -PW----PEEANRTLTGHLAMYHFSPTETSRQNLLR--EN--V------ADSRIFITGNTVIDALLWVRDQ--------- 183 (384)
T ss_dssp -ST----THHHHHHHHHTTCSEEEESSHHHHHHHHH--TT--C------CGGGEEECCCHHHHHHHHHHHH---------
T ss_pred -CC----chHhhHHHHHhhccEEEcCcHHHHHHHHH--cC--C------ChhhEEEeCChHHHHHHhhhhc---------
Confidence 00 01122222 34599999999988776543 22 2 457899999995 422111000
Q ss_pred cccccCcHHHHHHHHHHhC-CCCCCCceEEEEEeccccc-CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHH
Q 009217 330 AEDMKGKTVCKVTLQQQLG-LSKDASTIVVGCIFSDVSD-VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSF 405 (540)
Q Consensus 330 ~~~~~~k~~~~~~lr~~~g-l~~~~~~~lv~~vgrl~~~-KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l 405 (540)
.......+..+++++| ++.+ +..+++++||+.++ ||++.|++|+..+.+ ++++|++++ |+.+.+.+.++++
T Consensus 184 ---~~~~~~~~~~~~~~~~~~~~~-~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~-g~~~~~~~~l~~~ 258 (384)
T 1vgv_A 184 ---VMSSDKLRSELAANYPFIDPD-KKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPV-HLNPNVREPVNRI 258 (384)
T ss_dssp ---TTTCHHHHHHHHTTCTTCCTT-SEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEEC-CBCHHHHHHHHHH
T ss_pred ---cccchhhhHHHHHhccccCCC-CCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEc-CCCHHHHHHHHHH
Confidence 0000001235666777 6432 33578899999987 999999999999875 478988864 3223455666665
Q ss_pred HHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceee
Q 009217 406 QEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFI 485 (540)
Q Consensus 406 ~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l 485 (540)
... .++|+|++..+.+++..+|+.||+||+|| |.+++|||+||+|+|+++. .||.+|+++ +| +|++
T Consensus 259 ~~~--~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G~PvI~~~~-~~~~~e~v~-----~g-~g~l 324 (384)
T 1vgv_A 259 LGH--VKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLGKPVLVMRD-TTERPEAVT-----AG-TVRL 324 (384)
T ss_dssp HTT--CTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGTCCEEEESS-CCSCHHHHH-----HT-SEEE
T ss_pred hhc--CCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcCCCEEEccC-CCCcchhhh-----CC-ceEE
Confidence 432 26899987777677889999999999999 4458999999999999973 278888876 35 6799
Q ss_pred cCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHh
Q 009217 486 SSTFGNISLSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 486 ~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~l~ 538 (540)
+++ |+++|+++|..+++|++.+++|++++.+ +.|+|+++++.+ .++|+++.
T Consensus 325 v~~-d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~ 377 (384)
T 1vgv_A 325 VGT-DKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEAL-KNNRISLG 377 (384)
T ss_dssp ECS-SHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHH-HHTCCCC-
T ss_pred eCC-CHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHH-HHHHHhhc
Confidence 977 9999999999999999999999987755 789999999994 88887654
No 25
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.96 E-value=1.1e-29 Score=273.06 Aligned_cols=339 Identities=15% Similarity=0.107 Sum_probs=248.7
Q ss_pred CCCEEEEcCCchhhHHH-HHHHHHhhcCC--------CCCceEEEecCCCCCCC--CChhhhhh-c--------------
Q 009217 185 QPDVLHIHNWETAIVGP-LFWDIFVKQGL--------EGTRILLSCHNLNSLCL--EHPDKLAL-C-------------- 238 (540)
Q Consensus 185 ~pDIIH~h~~~~~~~~~-~~~~~~~~~~~--------~~~p~V~T~H~~~~~~~--~~~~~l~~-~-------------- 238 (540)
+|||||+|+||++++++ +++..+...++ .+..+|+|.|++.++|. ++...+.. +
T Consensus 320 ~p~viHlNDtHpal~i~ElmR~l~d~~~l~~d~A~~i~~~~~vfT~HTl~~eglE~wp~~l~~~lLPr~~~ii~~in~~f 399 (824)
T 2gj4_A 320 DKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRF 399 (824)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHTSCCCHHHHHHHHHHHEEEECCCCCGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcEEEccCCchHhHHHHHHHHHHHhcCCCHHHHHHHhcCcEEEEeCCChHHHhhhchHHHHHHhCchHHHHHHHHHHHH
Confidence 48899999999999988 55432211111 23459999999999887 65543322 1
Q ss_pred --------CCCccccCCCccccCCCCCccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC
Q 009217 239 --------GLDPARLHRPDRLQDNTKTHLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG 310 (540)
Q Consensus 239 --------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG 310 (540)
..+...+.++..++. +....+++.+.++..|+.|.+||+.+++.+++..++ ..+...++++..|.||
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~----~~~~~~p~k~~~iTNG 474 (824)
T 2gj4_A 400 LNRVAAAFPGDVDRLRRMSLVEE-GAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFK----DFYELEPHKFQNKTNG 474 (824)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEEC-SSSCEEEHHHHHHHTCSCEEESSHHHHHHHHHTTTH----HHHHHCGGGEEECCCC
T ss_pred HHHHHHHcCCcHHHHHhhhhhhh-cCCCcccHHHHHHHhcCceeeEcHHHHHHHhhHHhH----HHHHcChhhcccccCC
Confidence 000000000111111 012468999999999999999999999988765554 2445567899999999
Q ss_pred CCCCCC----CCCCCcccccc-----------------cCc-ccc-----cCcHHHHHH----HHHHhCCCCCCCceEEE
Q 009217 311 FDSSTW----DPSNDKFLTEN-----------------YCA-EDM-----KGKTVCKVT----LQQQLGLSKDASTIVVG 359 (540)
Q Consensus 311 vd~~~~----~p~~~~~l~~~-----------------~~~-~~~-----~~k~~~~~~----lr~~~gl~~~~~~~lv~ 359 (540)
||...| +|..+..+... |.. +++ +.|..+|.+ +++++|+..+++.++++
T Consensus 475 I~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g 554 (824)
T 2gj4_A 475 ITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDV 554 (824)
T ss_dssp BCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEE
T ss_pred cChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEe
Confidence 999999 78877666644 665 335 467778777 88899999888899999
Q ss_pred EEecccccCCHHHH-HHHHHHHH---hc------CcEEEEEecCCChhHHHH------HHHHHHHhCC-----C--cEEE
Q 009217 360 CIFSDVSDVFLENL-KAVVRGAK---MR------GIQFVFTGTNKLPSASRA------LVSFQEELKD-----G--IVIF 416 (540)
Q Consensus 360 ~vgrl~~~KG~~~L-i~A~~~l~---~~------~~~lvi~G~g~~~~~~~~------l~~l~~~~~~-----~--~v~f 416 (540)
++.|++.+||++++ +..+.++. +. +.+|+++|.+. |.+... +..+++.++. + +|.|
T Consensus 555 ~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~-P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvF 633 (824)
T 2gj4_A 555 QVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAA-PGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIF 633 (824)
T ss_dssp EESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCC-TTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEE
T ss_pred eeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCC-HhHHHHHHHHHHHHHHHHHhccCcccCCceEEEE
Confidence 99999999999998 88888774 22 46999999764 555444 7777776621 5 7999
Q ss_pred EEecChHHHHHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHH
Q 009217 417 VDSYDDALLHLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISL 494 (540)
Q Consensus 417 ~~~~~~~~~~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~l 494 (540)
+..|+.+..+.++++||++++||+ +|+||++.|-||.+|+++|++-. |...|+.+.- .+.|||+|... ++++
T Consensus 634 l~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlD--GanvEi~e~v---G~~Ngf~FG~~-~~ev 707 (824)
T 2gj4_A 634 LENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMD--GANVEMAEEA---GEENFFIFGMR-VEDV 707 (824)
T ss_dssp ETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSC--TTHHHHHHHH---CGGGSEECSCC-HHHH
T ss_pred ECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEec--Cccchhhhcc---CCCCEEEeCCc-HHHH
Confidence 999999999999999999999999 99999999999999999999876 7777775321 13457999765 5555
Q ss_pred HHHHH-------HHhcCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q 009217 495 SQALE-------EIKNNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 495 a~ai~-------~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~l~ 538 (540)
.++. .+.++.+.++++..+.+...|||+.. .+ |..+|+.+.
T Consensus 708 -~~l~~~~~~a~~~Y~~~~~l~~v~d~i~~g~fs~~~~-~~-y~~ly~~l~ 755 (824)
T 2gj4_A 708 -DRLDQRGYNAQEYYDRIPELRQIIEQLSSGFFSPKQP-DL-FKDIVNMLM 755 (824)
T ss_dssp -HHHHHHCCCHHHHHHHCHHHHHHHHHHHHTTTCTTST-TT-THHHHHHHH
T ss_pred -HHHHHcCCCHHHHhcCCHHHHHHHHHHHhCCCCCCCh-HH-HHHHHHHHH
Confidence 3331 12233345677777778899999987 67 699998874
No 26
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.96 E-value=9.7e-28 Score=223.51 Aligned_cols=185 Identities=16% Similarity=0.200 Sum_probs=156.1
Q ss_pred EeccCCCCCCCC--CCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEeccc-ccCCHHHHHHHHHHHH-
Q 009217 306 VAPCGFDSSTWD--PSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDV-SDVFLENLKAVVRGAK- 381 (540)
Q Consensus 306 vI~nGvd~~~~~--p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~-~~KG~~~Li~A~~~l~- 381 (540)
.||||+|.+.|. |... ...+.+..+|+++|++.+ ++++|+||+. +.||++.+++|+..+.
T Consensus 1 gipngvd~~~f~~~~~~~-------------~~~~~~~~~r~~~~~~~~---~~i~~~G~~~~~~K~~~~li~a~~~l~~ 64 (200)
T 2bfw_A 1 GSHNGIDCSFWNESYLTG-------------SRDERKKSLLSKFGMDEG---VTFMFIGRFDRGQKGVDVLLKAIEILSS 64 (200)
T ss_dssp ----CCCTTTSSGGGSCS-------------CHHHHHHHHHHHTTCCSC---EEEEEESCBCSSSSCHHHHHHHHHHHTT
T ss_pred CCCCccChhhcccccccc-------------chhhHHHHHHHHcCCCCC---CEEEEeeccccccCCHHHHHHHHHHHHh
Confidence 489999999998 7621 012236778999998643 6899999999 9999999999999985
Q ss_pred -h--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEE-EEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCc
Q 009217 382 -M--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIF-VDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAA 457 (540)
Q Consensus 382 -~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f-~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~p 457 (540)
+ .+++|+|+|.++ +...+.+++++++++ +|+| ++..+.+++..+|+.||++++||.+|+||++++|||+||+|
T Consensus 65 ~~~~~~~~l~i~G~~~-~~~~~~l~~~~~~~~--~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~P 141 (200)
T 2bfw_A 65 KKEFQEMRFIIIGKGD-PELEGWARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAI 141 (200)
T ss_dssp SGGGGGEEEEEECCBC-HHHHHHHHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCE
T ss_pred hccCCCeEEEEECCCC-hHHHHHHHHHHHhcC--CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCC
Confidence 4 479999999764 346778888888874 9999 88889888999999999999999999999999999999999
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHh
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN-NPLSWKRKIKDAML 517 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~-~~~~~~~~~~~a~~ 517 (540)
||+++. ||+.|++ + +.+|+++++.|+++++++|..+++ |++.++++++++++
T Consensus 142 vI~~~~--~~~~e~~-~-----~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~ 194 (200)
T 2bfw_A 142 PIASAV--GGLRDII-T-----NETGILVKAGDPGELANAILKALELSRSDLSKFRENCKK 194 (200)
T ss_dssp EEEESC--HHHHHHC-C-----TTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEEeCC--CChHHHc-C-----CCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999998 9999998 4 334689999999999999999999 99999999998864
No 27
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.95 E-value=4.6e-26 Score=236.89 Aligned_cols=291 Identities=12% Similarity=0.044 Sum_probs=205.6
Q ss_pred CCCEEEEcCCchhhHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccchhhh
Q 009217 185 QPDVLHIHNWETAIVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLVNILK 264 (540)
Q Consensus 185 ~pDIIH~h~~~~~~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (540)
.-|+|.+||+|-.++|.+++.. ..+.++.+.+|.. +|...+ ..-++.. ...-+.
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~-----~~~~~igfFlHiP-----fPs~e~-f~~Lp~~---------------~r~ell 202 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQ-----RPDAPILLFVHIP-----WPSADY-WRILPKE---------------IRTGIL 202 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHH-----CTTSCEEEECCSC-----CCCHHH-HTTSCHH---------------HHHHHH
T ss_pred CCCEEEEeCccHhHHHHHHHhh-----CCCCeEEEEEcCC-----CCCHHH-HhhCcHh---------------HHHHHH
Confidence 4589999999999998888763 3688999999953 222211 0011100 012334
Q ss_pred HHHhhccceeeccccchhhhhhc---cc-CC-------CchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccc
Q 009217 265 GGVVYSNKVVIVSSMHSKGRIIR---SL-SH-------GLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDM 333 (540)
Q Consensus 265 ~~~~~ad~vi~vS~~~~~~~~~~---~~-~~-------gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~ 333 (540)
.++..+|.|.+-++.+++..... .. |. ++. ......++.++|+|||++.|.|....
T Consensus 203 ~gll~~DligF~t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~--~~gr~v~v~viP~GID~~~f~~~~~~----------- 269 (496)
T 3t5t_A 203 HGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVE--WRGHRTRLRTMPLGYSPLTLDGRNPQ----------- 269 (496)
T ss_dssp HHHTTSSEEEESSHHHHHHHHHHHHHHCTTCEEETTTTEEE--ETTEEEEEEECCCCBCGGGC----CC-----------
T ss_pred HHHHhCCEEEEecHHHHHHHHHHHHHHhcCCcccccCCeEE--ECCEEEEEEEeccEeCHHHhchhhHH-----------
Confidence 56778899998888877653221 11 10 000 00123578999999999988775210
Q ss_pred cCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--c---CcEEEEEecCC---Ch---hHHHHH
Q 009217 334 KGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--R---GIQFVFTGTNK---LP---SASRAL 402 (540)
Q Consensus 334 ~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~---~~~lvi~G~g~---~~---~~~~~l 402 (540)
.+..+|++++ +.++++++||+++.||++.+++|+ ++++ + ++.|+++|... .+ .+++++
T Consensus 270 -----~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l 338 (496)
T 3t5t_A 270 -----LPEGIEEWAD-----GHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRV 338 (496)
T ss_dssp -----CCTTHHHHHT-----TSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHH
T ss_pred -----HHHHHHHHhC-----CceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHH
Confidence 1245677776 258999999999999999999999 7765 2 35688887321 12 345567
Q ss_pred HHHHHHhCC----CcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcC---CceEEEecCCCccccceecc
Q 009217 403 VSFQEELKD----GIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYG---AAPIAVTSSDIEFRHFAEFD 475 (540)
Q Consensus 403 ~~l~~~~~~----~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G---~pvI~~~~~~gg~~e~v~~~ 475 (540)
++++.+++. ..|+|++..+.+++..+|++||+||+||.+|+||+|.+|||||| .|+|+|+. +|..+.+..
T Consensus 339 ~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~--aGa~~~l~~- 415 (496)
T 3t5t_A 339 ETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSET--CGAAEVLGE- 415 (496)
T ss_dssp HHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETT--BTTHHHHGG-
T ss_pred HHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCC--CCCHHHhCC-
Confidence 777666531 26999988888889999999999999999999999999999996 89999998 888877731
Q ss_pred CCccccceeecCCCCHHHHHHHHHHHhcCH-HHHHHHHHHHHh--ccCChHHHHHHHHHHHHH
Q 009217 476 HESTRFSRFISSTFGNISLSQALEEIKNNP-LSWKRKIKDAML--QDFSWDADCNDIHISAYT 535 (540)
Q Consensus 476 ~~~~g~~G~l~~~~d~~~la~ai~~l~~~~-~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~ 535 (540)
+|++++|.|++++++||.++++++ +.++++.++.++ ..+++..-++. +++-.+
T Consensus 416 ------~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~-fl~~L~ 471 (496)
T 3t5t_A 416 ------YCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAARPWTLEAWVQA-QLDGLA 471 (496)
T ss_dssp ------GSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCBHHHHHHH-HHHHHH
T ss_pred ------CEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHh
Confidence 258999999999999999999864 566666666555 78888888887 355443
No 28
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.94 E-value=2e-26 Score=208.01 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=135.0
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
.++++|+||+.++||++.+++|+..+.+ .+++|+|+|+|+. .+.+++++++++. +|+| +..+.+++..+|+.||
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~-~v~~-g~~~~~~~~~~~~~ad 76 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPD---EKKIKLLAQKLGV-KAEF-GFVNSNELLEILKTCT 76 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTT---HHHHHHHHHHHTC-EEEC-CCCCHHHHHHHHTTCS
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCcc---HHHHHHHHHHcCC-eEEE-eecCHHHHHHHHHhCC
Confidence 3789999999999999999999998854 5899999998753 5778888888864 8888 8888888999999999
Q ss_pred EEEECCCCCCCchHHHHHHhcCC-ceEEE-ecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGA-APIAV-TSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRK 511 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~-pvI~~-~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~ 511 (540)
++|+||.+|+||++++|||+||+ |||++ +. ||..|++.+ + +.++++.|+++++++|..+++|++.++++
T Consensus 77 v~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~--~~~~~~~~~-----~--~~~~~~~~~~~l~~~i~~l~~~~~~~~~~ 147 (166)
T 3qhp_A 77 LYVHAANVESEAIACLEAISVGIVPVIANSPL--SATRQFALD-----E--RSLFEPNNAKDLSAKIDWWLENKLERERM 147 (166)
T ss_dssp EEEECCCSCCCCHHHHHHHHTTCCEEEECCTT--CGGGGGCSS-----G--GGEECTTCHHHHHHHHHHHHHCHHHHHHH
T ss_pred EEEECCcccCccHHHHHHHhcCCCcEEeeCCC--CchhhhccC-----C--ceEEcCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999999999999998 99984 45 888999874 2 24888999999999999999999999999
Q ss_pred HHHHHh--ccCChHHHHHH
Q 009217 512 IKDAML--QDFSWDADCND 528 (540)
Q Consensus 512 ~~~a~~--~~fsw~~~a~~ 528 (540)
++++++ ++|||+.++++
T Consensus 148 ~~~~~~~~~~~s~~~~~~~ 166 (166)
T 3qhp_A 148 QNEYAKSALNYTLENSVIQ 166 (166)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHCChhhhhcC
Confidence 998876 88999998864
No 29
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.94 E-value=5.9e-26 Score=232.73 Aligned_cols=217 Identities=11% Similarity=0.068 Sum_probs=157.1
Q ss_pred HhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCC-CCCCCCCCCCcccccccCcccccCcHHHHHHHHH
Q 009217 267 VVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGF-DSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQ 345 (540)
Q Consensus 267 ~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGv-d~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~ 345 (540)
.+.+|.++++|+..++.+... | + +++++.+++|++ |...+.+ .+..+++
T Consensus 144 ~~~~~~~~~~s~~~~~~l~~~--g--~------~~~ki~vi~n~~~d~~~~~~--------------------~~~~~~~ 193 (376)
T 1v4v_A 144 DVLTDLDFAPTPLAKANLLKE--G--K------REEGILVTGQTGVDAVLLAA--------------------KLGRLPE 193 (376)
T ss_dssp HHHCSEEEESSHHHHHHHHTT--T--C------CGGGEEECCCHHHHHHHHHH--------------------HHCCCCT
T ss_pred HHHhceeeCCCHHHHHHHHHc--C--C------CcceEEEECCchHHHHhhhh--------------------hhhHHHH
Confidence 456899999998877765431 2 2 457899999975 4211100 0000111
Q ss_pred HhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEE-ecCCChhHHHHHHHHHHHhCCCcEEEEEecCh
Q 009217 346 QLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDD 422 (540)
Q Consensus 346 ~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~-G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~ 422 (540)
++ + ++..+++++||+..+||++.+++|+..+.+ ++++++++ |++ +...+.+++++.. .++|+|++....
T Consensus 194 ~~--~--~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~--~~~~~~l~~~~~~--~~~v~~~g~~g~ 265 (376)
T 1v4v_A 194 GL--P--EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLN--PVVREAVFPVLKG--VRNFVLLDPLEY 265 (376)
T ss_dssp TC--C--SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSC--HHHHHHHHHHHTT--CTTEEEECCCCH
T ss_pred hc--C--CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCC--HHHHHHHHHHhcc--CCCEEEECCCCH
Confidence 12 1 234567789999888999999999999875 47898886 543 3345666666532 268999977766
Q ss_pred HHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEE-ecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 423 ALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 423 ~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
..+..+|++||+||+|| | |+ ++|||+||+|+|++ +. ||..++++. | +|++++ .|+++|+++|.++
T Consensus 266 ~~~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~PvI~~~~~--~~~~~~~~~-----g-~g~lv~-~d~~~la~~i~~l 331 (376)
T 1v4v_A 266 GSMAALMRASLLLVTDS--G--GL-QEEGAALGVPVVVLRNV--TERPEGLKA-----G-ILKLAG-TDPEGVYRVVKGL 331 (376)
T ss_dssp HHHHHHHHTEEEEEESC--H--HH-HHHHHHTTCCEEECSSS--CSCHHHHHH-----T-SEEECC-SCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcEEEECC--c--CH-HHHHHHcCCCEEeccCC--CcchhhhcC-----C-ceEECC-CCHHHHHHHHHHH
Confidence 67889999999999999 3 44 78999999999987 45 888887652 2 468885 5999999999999
Q ss_pred hcCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh
Q 009217 502 KNNPLSWKRKIKDAMLQDFSWDADCNDIHISAYTAIK 538 (540)
Q Consensus 502 ~~~~~~~~~~~~~a~~~~fsw~~~a~~~y~~lY~~l~ 538 (540)
++|++.+++|++++ +.|+|...++++ .++|.++.
T Consensus 332 l~d~~~~~~~~~~~--~~~~~~~~~~~i-~~~i~~~~ 365 (376)
T 1v4v_A 332 LENPEELSRMRKAK--NPYGDGKAGLMV-ARGVAWRL 365 (376)
T ss_dssp HTCHHHHHHHHHSC--CSSCCSCHHHHH-HHHHHHHT
T ss_pred HhChHhhhhhcccC--CCCCCChHHHHH-HHHHHHHh
Confidence 99999999998643 678888888884 77777654
No 30
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.90 E-value=1.7e-23 Score=191.05 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=127.1
Q ss_pred CceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHH--HhCC-CcEEEEEecChHHHHHHHh
Q 009217 354 STIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQE--ELKD-GIVIFVDSYDDALLHLIFS 430 (540)
Q Consensus 354 ~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~--~~~~-~~v~f~~~~~~~~~~~~~~ 430 (540)
+.++++|+||+.+.||++.+++|+..+ ++++|+|+|.++.. +.++++++ .++. ++|+|++.++.+++..+|+
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~---~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 96 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKG---DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYS 96 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTT---STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHH
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccH---HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHH
Confidence 357899999999999999999999988 58999999977642 34555555 3332 7999999999999999999
Q ss_pred cCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHH-HH
Q 009217 431 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLS-WK 509 (540)
Q Consensus 431 ~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~-~~ 509 (540)
.||++++||..|+||++++|||+||+|||+++. |+..|++.+ +.+|+++ +.|+++++++|.++++|++. ++
T Consensus 97 ~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~--~~~~e~i~~-----~~~g~~~-~~d~~~l~~~i~~l~~~~~~~~~ 168 (177)
T 2f9f_A 97 RCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNE--GGFKETVIN-----EKTGYLV-NADVNEIIDAMKKVSKNPDKFKK 168 (177)
T ss_dssp HCSEEEECCSSCCSCHHHHHHHHTTCCEEEESS--HHHHHHCCB-----TTTEEEE-CSCHHHHHHHHHHHHHCTTTTHH
T ss_pred hCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCC--CCHHHHhcC-----CCccEEe-CCCHHHHHHHHHHHHhCHHHHHH
Confidence 999999999999999999999999999999998 999999874 4567899 99999999999999999886 55
Q ss_pred HHHHHH
Q 009217 510 RKIKDA 515 (540)
Q Consensus 510 ~~~~~a 515 (540)
++.+++
T Consensus 169 ~~~~~a 174 (177)
T 2f9f_A 169 DCFRRA 174 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 31
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.90 E-value=1.1e-22 Score=208.15 Aligned_cols=200 Identities=10% Similarity=-0.030 Sum_probs=146.6
Q ss_pred hhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHHH
Q 009217 262 ILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKV 341 (540)
Q Consensus 262 ~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~ 341 (540)
+.+..++.+|.|+++|+..++.+.. .| + + ++.+|+|+. |.+...+ .
T Consensus 146 ~~~~~~~~~d~ii~~S~~~~~~l~~--~g--~-------~-ki~vi~n~~----f~~~~~~--~---------------- 191 (374)
T 2xci_A 146 IEKILSKKFDLIIMRTQEDVEKFKT--FG--A-------K-RVFSCGNLK----FICQKGK--G---------------- 191 (374)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHHHT--TT--C-------C-SEEECCCGG----GCCCCCS--C----------------
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHH--cC--C-------C-eEEEcCCCc----cCCCcCh--h----------------
Confidence 3455677899999999988877653 22 1 3 899999983 2221100 0
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCC-------
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDG------- 412 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~------- 412 (540)
+ .+ ..+++++.|+ ..||++.|++|++.+.+ ++++|+|+|+|+ ...+++++++++++..
T Consensus 192 ---~--~l----~~~vi~~~~~--~~k~~~~ll~A~~~l~~~~p~~~lvivG~g~--~~~~~l~~~~~~~gl~~~~~~~~ 258 (374)
T 2xci_A 192 ---I--KL----KGEFIVAGSI--HTGEVEIILKAFKEIKKTYSSLKLILVPRHI--ENAKIFEKKARDFGFKTSFFENL 258 (374)
T ss_dssp ---C--CC----SSCEEEEEEE--CGGGHHHHHHHHHHHHTTCTTCEEEEEESSG--GGHHHHHHHHHHTTCCEEETTCC
T ss_pred ---h--hh----cCCEEEEEeC--CCchHHHHHHHHHHHHhhCCCcEEEEECCCH--HHHHHHHHHHHHCCCceEEecCC
Confidence 0 01 1255666665 46899999999999875 489999999774 2335677777776532
Q ss_pred --cEEEEEecChHHHHHHHhcCCEEEECCC-CCCCchHHHHHHhcCCceEEE-ecCCCccccceeccCCccccceeecCC
Q 009217 413 --IVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAEFDHESTRFSRFISST 488 (540)
Q Consensus 413 --~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~~~~~~~g~~G~l~~~ 488 (540)
+|.|. +.. +++..+|+.||++++||. .|++|++++||||||+|||++ ++ +|.+|++.+. +.+|+++++
T Consensus 259 ~~~v~~~-~~~-~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~--~~~~e~~~~~----~~~G~l~~~ 330 (374)
T 2xci_A 259 EGDVILV-DRF-GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYT--HKVNDLKEFL----EKEGAGFEV 330 (374)
T ss_dssp CSSEEEC-CSS-SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCC--TTSHHHHHHH----HHTTCEEEC
T ss_pred CCcEEEE-CCH-HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCc--cChHHHHHHH----HHCCCEEEe
Confidence 45554 333 446789999999988875 477899999999999999975 55 8899987631 124678888
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 009217 489 FGNISLSQALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 489 ~d~~~la~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
.|+++|+++|.++++| +++++|+++|++
T Consensus 331 ~d~~~La~ai~~ll~d-~~r~~mg~~ar~ 358 (374)
T 2xci_A 331 KNETELVTKLTELLSV-KKEIKVEEKSRE 358 (374)
T ss_dssp CSHHHHHHHHHHHHHS-CCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhH-HHHHHHHHHHHH
Confidence 9999999999999999 999999998864
No 32
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.85 E-value=4.8e-20 Score=190.97 Aligned_cols=159 Identities=13% Similarity=-0.043 Sum_probs=120.1
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
..++++.|++. .++.+.+.++++.+.+.+.++++++.++. ..+.++ .++ ++|+|.+..+ ...+|+.||+
T Consensus 243 ~~vlv~~G~~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~~~--~~~~l~----~~~-~~v~~~~~~~---~~~~l~~ad~ 311 (412)
T 3otg_A 243 PLVYLTLGTSS-GGTVEVLRAAIDGLAGLDADVLVASGPSL--DVSGLG----EVP-ANVRLESWVP---QAALLPHVDL 311 (412)
T ss_dssp CEEEEECTTTT-CSCHHHHHHHHHHHHTSSSEEEEECCSSC--CCTTCC----CCC-TTEEEESCCC---HHHHGGGCSE
T ss_pred CEEEEEcCCCC-cCcHHHHHHHHHHHHcCCCEEEEEECCCC--Chhhhc----cCC-CcEEEeCCCC---HHHHHhcCcE
Confidence 45677889986 78888888888887767888888773321 111221 122 7899886663 5688999999
Q ss_pred EEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCCC--CHHHHHHHHHHHhcCHHHH
Q 009217 435 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNPLSW 508 (540)
Q Consensus 435 ~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~~~~~ 508 (540)
||.+|- +.+++|||++|+|+|+... ++ ..+.+.+ +..|+++++. ++++|+++|.++++|++.+
T Consensus 312 ~v~~~g----~~t~~Ea~a~G~P~v~~p~--~~~q~~~~~~v~~-----~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 380 (412)
T 3otg_A 312 VVHHGG----SGTTLGALGAGVPQLSFPW--AGDSFANAQAVAQ-----AGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380 (412)
T ss_dssp EEESCC----HHHHHHHHHHTCCEEECCC--STTHHHHHHHHHH-----HTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred EEECCc----hHHHHHHHHhCCCEEecCC--chhHHHHHHHHHH-----cCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 998863 3789999999999999765 43 4455543 2336788876 8899999999999999999
Q ss_pred HHHHHHHHh--ccCChHHHHHHHHHHHHHH
Q 009217 509 KRKIKDAML--QDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 509 ~~~~~~a~~--~~fsw~~~a~~~y~~lY~~ 536 (540)
+++++.+.+ ..++|+++++.+ +++|.+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 409 (412)
T 3otg_A 381 AGARAVAAEIAAMPGPDEVVRLL-PGFASR 409 (412)
T ss_dssp HHHHHHHHHHHHSCCHHHHHTTH-HHHHC-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHH-HHHhcc
Confidence 999887765 778999999995 888754
No 33
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.84 E-value=1.3e-19 Score=186.81 Aligned_cols=282 Identities=10% Similarity=0.069 Sum_probs=178.2
Q ss_pred HHHHHHHHHcCCCCCEEEEcCCchh-hHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccc
Q 009217 173 RASLDYIVKSRKQPDVLHIHNWETA-IVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRL 251 (540)
Q Consensus 173 ~~~~~~~~~~~~~pDIIH~h~~~~~-~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 251 (540)
..+.+++++ .+||+||+|+..+. +.+.++.. ..++|+++..++... +. . .
T Consensus 101 ~~l~~~l~~--~kPDvVi~~g~~~~~~~~~~aa~------~~~IPv~h~~ag~rs-~~------------~--~------ 151 (396)
T 3dzc_A 101 LGMQQVLSS--EQPDVVLVHGDTATTFAASLAAY------YQQIPVGHVEAGLRT-GN------------I--Y------ 151 (396)
T ss_dssp HHHHHHHHH--HCCSEEEEETTSHHHHHHHHHHH------TTTCCEEEETCCCCC-SC------------T--T------
T ss_pred HHHHHHHHh--cCCCEEEEECCchhHHHHHHHHH------HhCCCEEEEECCccc-cc------------c--c------
Confidence 344445544 68999999974433 33233222 378998754332211 00 0 0
Q ss_pred cCCCCCccchhhhHH-HhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC-CCCCCCCCCCCcccccccC
Q 009217 252 QDNTKTHLVNILKGG-VVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG-FDSSTWDPSNDKFLTENYC 329 (540)
Q Consensus 252 ~~~~~~~~~~~~~~~-~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG-vd~~~~~p~~~~~l~~~~~ 329 (540)
..+ .....+.. -+.+|.+++.|+..++.+... | + +++++.++.|. +|...+.+..
T Consensus 152 ~~~----~~~~~r~~~~~~a~~~~~~se~~~~~l~~~--G--~------~~~ki~vvGn~~~d~~~~~~~~--------- 208 (396)
T 3dzc_A 152 SPW----PEEGNRKLTAALTQYHFAPTDTSRANLLQE--N--Y------NAENIFVTGNTVIDALLAVREK--------- 208 (396)
T ss_dssp SST----THHHHHHHHHHTCSEEEESSHHHHHHHHHT--T--C------CGGGEEECCCHHHHHHHHHHHH---------
T ss_pred cCC----cHHHHHHHHHHhcCEEECCCHHHHHHHHHc--C--C------CcCcEEEECCcHHHHHHHhhhh---------
Confidence 000 01223333 456899999998877766542 2 2 46789999985 4422111100
Q ss_pred cccccCcHHHHHHHHHHhC-CCCCCCceEEEEEecc-cccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHH
Q 009217 330 AEDMKGKTVCKVTLQQQLG-LSKDASTIVVGCIFSD-VSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSF 405 (540)
Q Consensus 330 ~~~~~~k~~~~~~lr~~~g-l~~~~~~~lv~~vgrl-~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l 405 (540)
.......+.++++++| ++.+ +..+++..+|. ...|+++.+++|+..+.+ +++++++.+ |++|...+.++++
T Consensus 209 ---~~~~~~~~~~~r~~lg~l~~~-~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~-g~~~~~~~~l~~~ 283 (396)
T 3dzc_A 209 ---IHTDMDLQATLESQFPMLDAS-KKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPV-HLNPNVREPVNKL 283 (396)
T ss_dssp ---HHHCHHHHHHHHHTCTTCCTT-SEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEEC-CBCHHHHHHHHHH
T ss_pred ---cccchhhHHHHHHHhCccCCC-CCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEe-CCChHHHHHHHHH
Confidence 0000001366788888 4432 22344455564 345789999999999875 478988864 3224455555543
Q ss_pred HHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEE-ecCCCccccceeccCCcccccee
Q 009217 406 QEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAEFDHESTRFSRF 484 (540)
Q Consensus 406 ~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~~~~~~~g~~G~ 484 (540)
... .++|++++.....+...+|+.||++|.+| + |++ +|||++|+|+|++ +. ++.+|+++. |. ++
T Consensus 284 ~~~--~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~~-~EA~a~G~PvV~~~~~--~~~~e~v~~-----G~-~~ 348 (396)
T 3dzc_A 284 LKG--VSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GIQ-EEAPSLGKPVLVMRET--TERPEAVAA-----GT-VK 348 (396)
T ss_dssp TTT--CTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GGG-TTGGGGTCCEEECCSS--CSCHHHHHH-----TS-EE
T ss_pred HcC--CCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cHH-HHHHHcCCCEEEccCC--CcchHHHHc-----Cc-eE
Confidence 221 26899887777666779999999999999 3 544 8999999999998 55 777888763 32 46
Q ss_pred ecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhccCChHHHHHHH
Q 009217 485 ISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQDFSWDADCNDI 529 (540)
Q Consensus 485 l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~~fsw~~~a~~~ 529 (540)
++++ |+++|++++..+++|++.+++|++++ ..|.....++++
T Consensus 349 lv~~-d~~~l~~ai~~ll~d~~~~~~m~~~~--~~~~~~~aa~ri 390 (396)
T 3dzc_A 349 LVGT-NQQQICDALSLLLTDPQAYQAMSQAH--NPYGDGKACQRI 390 (396)
T ss_dssp ECTT-CHHHHHHHHHHHHHCHHHHHHHHTSC--CTTCCSCHHHHH
T ss_pred EcCC-CHHHHHHHHHHHHcCHHHHHHHhhcc--CCCcCChHHHHH
Confidence 7754 78999999999999999999998765 457666666664
No 34
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.82 E-value=4.6e-19 Score=182.92 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=145.5
Q ss_pred hhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC-CCCCCCCCCCCcccccccCcccccCcHHHHHHHHHH
Q 009217 268 VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG-FDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQ 346 (540)
Q Consensus 268 ~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG-vd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~ 346 (540)
+.+|.+++.|+..++.+... | + +++++.++.|. +|...+.+... .+...+++
T Consensus 168 ~~a~~~~~~se~~~~~l~~~--G--i------~~~~i~vvGn~~~D~~~~~~~~~-----------------~~~~~~~~ 220 (403)
T 3ot5_A 168 VMADIHFSPTKQAKENLLAE--G--K------DPATIFVTGNTAIDALKTTVQKD-----------------YHHPILEN 220 (403)
T ss_dssp HHCSEEEESSHHHHHHHHHT--T--C------CGGGEEECCCHHHHHHHHHSCTT-----------------CCCHHHHS
T ss_pred HhcCEEECCCHHHHHHHHHc--C--C------CcccEEEeCCchHHHHHhhhhhh-----------------cchHHHHh
Confidence 44788999998887766542 2 2 46789999984 55432221100 01123333
Q ss_pred hCCCCCCCceEEEEEecccc-cCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChH
Q 009217 347 LGLSKDASTIVVGCIFSDVS-DVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDA 423 (540)
Q Consensus 347 ~gl~~~~~~~lv~~vgrl~~-~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~ 423 (540)
+ + ++..+++..+|... .|+++.+++|+..+.+ +++++++.+ ++.+...+.+++.... .++|++++..+..
T Consensus 221 l--~--~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~-~~~~~~~~~l~~~~~~--~~~v~l~~~l~~~ 293 (403)
T 3ot5_A 221 L--G--DNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPM-HLNPAVREKAMAILGG--HERIHLIEPLDAI 293 (403)
T ss_dssp C--T--TCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEEC-CSCHHHHHHHHHHHTT--CTTEEEECCCCHH
T ss_pred c--c--CCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEec-CCCHHHHHHHHHHhCC--CCCEEEeCCCCHH
Confidence 3 2 22345566777543 4778999999998875 478998875 3334445555543221 2689999888777
Q ss_pred HHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEE-ecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 424 LLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 424 ~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+...+|+.||++|.+| |-+.+|||++|+|+|++ +. |+.+|.++ .| +|+++++ |+++|++++..++
T Consensus 294 ~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV~~~~~--~~~~e~v~-----~g-~~~lv~~-d~~~l~~ai~~ll 359 (403)
T 3ot5_A 294 DFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVLVLRDT--TERPEGIE-----AG-TLKLIGT-NKENLIKEALDLL 359 (403)
T ss_dssp HHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEEECCSS--CSCHHHHH-----HT-SEEECCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEEEecCC--Ccchhhee-----CC-cEEEcCC-CHHHHHHHHHHHH
Confidence 7889999999999998 44559999999999998 55 77778775 23 4678865 8999999999999
Q ss_pred cCHHHHHHHHHHHHhccCChHHHHHHH
Q 009217 503 NNPLSWKRKIKDAMLQDFSWDADCNDI 529 (540)
Q Consensus 503 ~~~~~~~~~~~~a~~~~fsw~~~a~~~ 529 (540)
+|++.+++|++++ ..|.....++++
T Consensus 360 ~~~~~~~~m~~~~--~~~g~~~aa~rI 384 (403)
T 3ot5_A 360 DNKESHDKMAQAA--NPYGDGFAANRI 384 (403)
T ss_dssp HCHHHHHHHHHSC--CTTCCSCHHHHH
T ss_pred cCHHHHHHHHhhc--CcccCCcHHHHH
Confidence 9999999998654 345444444443
No 35
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.78 E-value=3.9e-18 Score=171.01 Aligned_cols=252 Identities=13% Similarity=-0.004 Sum_probs=170.0
Q ss_pred CCCCEEEEcC--Cchh-hHHHHHHHHHhhcCCCCCceEEEecCCCCCCCCChhhhhhcCCCccccCCCccccCCCCCccc
Q 009217 184 KQPDVLHIHN--WETA-IVGPLFWDIFVKQGLEGTRILLSCHNLNSLCLEHPDKLALCGLDPARLHRPDRLQDNTKTHLV 260 (540)
Q Consensus 184 ~~pDIIH~h~--~~~~-~~~~~~~~~~~~~~~~~~p~V~T~H~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 260 (540)
.++|+|+++. |.+. +...++... + ..++|+|+.+||+.... . .... ...
T Consensus 73 ~~~DvIi~q~P~~~~~~~~~~~~~~l---k-~~~~k~i~~ihDl~pl~--------~---~~~~-------------~~~ 124 (339)
T 3rhz_A 73 RHGDVVIFQTPTWNTTEFDEKLMNKL---K-LYDIKIVLFIHDVVPLM--------F---SGNF-------------YLM 124 (339)
T ss_dssp CTTCEEEEEECCSSCHHHHHHHHHHH---T-TSSCEEEEEESCCHHHH--------C---GGGG-------------GGH
T ss_pred CCCCEEEEeCCCcchhhHHHHHHHHH---H-hcCCEEEEEecccHHhh--------C---ccch-------------hhH
Confidence 6799999986 3332 223344332 1 24899999999873210 0 0000 012
Q ss_pred hhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccCCCCCCCCCCCCcccccccCcccccCcHHHH
Q 009217 261 NILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCK 340 (540)
Q Consensus 261 ~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~ 340 (540)
..++..++.||.|+++|+.+++.+... | + +..++.++++. |.. .+. +
T Consensus 125 ~~E~~~y~~aD~Ii~~S~~~~~~l~~~--G--~------~~~ki~~~~~~-~~~--~~~-----~--------------- 171 (339)
T 3rhz_A 125 DRTIAYYNKADVVVAPSQKMIDKLRDF--G--M------NVSKTVVQGMW-DHP--TQA-----P--------------- 171 (339)
T ss_dssp HHHHHHHTTCSEEEESCHHHHHHHHHT--T--C------CCSEEEECCSC-CCC--CCC-----C---------------
T ss_pred HHHHHHHHHCCEEEECCHHHHHHHHHc--C--C------CcCceeecCCC-Ccc--Ccc-----c---------------
Confidence 356778999999999999998877542 2 1 33566443321 211 000 0
Q ss_pred HHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec
Q 009217 341 VTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY 420 (540)
Q Consensus 341 ~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~ 420 (540)
.......+.++|+|++.+...+. .+ ..+++|+|+|+|+.. ++ +||+|+|.+
T Consensus 172 --------~~~~~~~~~i~yaG~l~k~~~L~----~l----~~~~~f~ivG~G~~~-----------~l--~nV~f~G~~ 222 (339)
T 3rhz_A 172 --------MFPAGLKREIHFPGNPERFSFVK----EW----KYDIPLKVYTWQNVE-----------LP--QNVHKINYR 222 (339)
T ss_dssp --------CCCCEEEEEEEECSCTTTCGGGG----GC----CCSSCEEEEESCCCC-----------CC--TTEEEEECC
T ss_pred --------ccccCCCcEEEEeCCcchhhHHH----hC----CCCCeEEEEeCCccc-----------Cc--CCEEEeCCC
Confidence 00011347899999999643322 11 368999999988641 23 399999999
Q ss_pred ChHHHHHHHhcCCEEEECCC-------CCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHH
Q 009217 421 DDALLHLIFSGSDIILCHSF-------HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNIS 493 (540)
Q Consensus 421 ~~~~~~~~~~~aDi~v~PS~-------~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~ 493 (540)
+.++++.+++.+|+.+++.. ...+|..+.|+||||+|||+++. |++.|+|.+ +..|++++ +.++
T Consensus 223 ~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~--~~~~~~v~~-----~~~G~~~~--~~~e 293 (339)
T 3rhz_A 223 PDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEG--IANQELIEN-----NGLGWIVK--DVEE 293 (339)
T ss_dssp CHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETT--CTTTHHHHH-----HTCEEEES--SHHH
T ss_pred CHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccC--hhHHHHHHh-----CCeEEEeC--CHHH
Confidence 99999999988888888611 12468889999999999999988 999999974 34468876 4678
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHH
Q 009217 494 LSQALEEIKNNPLSWKRKIKDAML--QDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 494 la~ai~~l~~~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~ 536 (540)
++++|..+ +++.+++|++++++ +.++|...+++...+.+..
T Consensus 294 ~~~~i~~l--~~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~~ 336 (339)
T 3rhz_A 294 AIMKVKNV--NEDEYIELVKNVRSFNPILRKGFFTRRLLTESVFQ 336 (339)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 99999887 46779999999876 6788888887654444443
No 36
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.77 E-value=1.2e-16 Score=162.71 Aligned_cols=161 Identities=8% Similarity=-0.009 Sum_probs=106.4
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCE
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDI 434 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi 434 (540)
.++++.|++...+.-+.+.+++..+.. .+.+++++. |.. . .+.+.+..+..+ .++.+.+ |.++ +..+|+.||+
T Consensus 182 ~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~-G~~-~-~~~~~~~~~~~~-~~~~v~~-f~~d-m~~~l~~aDl 255 (365)
T 3s2u_A 182 NLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQA-GRQ-H-AEITAERYRTVA-VEADVAP-FISD-MAAAYAWADL 255 (365)
T ss_dssp EEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEEC-CTT-T-HHHHHHHHHHTT-CCCEEES-CCSC-HHHHHHHCSE
T ss_pred EEEEECCcCCccccchhhHHHHHhcccccceEEEEec-Ccc-c-cccccceecccc-ccccccc-chhh-hhhhhccceE
Confidence 455566888888777788888887754 356666544 432 2 233444444554 4666654 4333 5689999999
Q ss_pred EEECCCCCCCchHHHHHHhcCCceEEEecCCCccc--------cceeccCCccccceeecCCC--CHHHHHHHHHHHhcC
Q 009217 435 ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR--------HFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNN 504 (540)
Q Consensus 435 ~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~--------e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~ 504 (540)
+|.-+ -+.++.|+|++|+|+|.... .... +.+.. .|. |.+++.. +++.|+++|.++++|
T Consensus 256 vI~ra----G~~Tv~E~~a~G~P~Ilip~--p~~~~~~Q~~NA~~l~~----~G~-a~~l~~~~~~~~~L~~~i~~ll~d 324 (365)
T 3s2u_A 256 VICRA----GALTVSELTAAGLPAFLVPL--PHAIDDHQTRNAEFLVR----SGA-GRLLPQKSTGAAELAAQLSEVLMH 324 (365)
T ss_dssp EEECC----CHHHHHHHHHHTCCEEECC-------CCHHHHHHHHHHT----TTS-EEECCTTTCCHHHHHHHHHHHHHC
T ss_pred EEecC----CcchHHHHHHhCCCeEEecc--CCCCCcHHHHHHHHHHH----CCC-EEEeecCCCCHHHHHHHHHHHHCC
Confidence 99765 36899999999999998655 2211 11221 232 4666644 578999999999999
Q ss_pred HHHHHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 009217 505 PLSWKRKIKDAML--QDFSWDADCNDIHISAY 534 (540)
Q Consensus 505 ~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY 534 (540)
|+.+++|++++++ ...+.+++++.+ +++-
T Consensus 325 ~~~~~~m~~~a~~~~~~~aa~~ia~~i-~~la 355 (365)
T 3s2u_A 325 PETLRSMADQARSLAKPEATRTVVDAC-LEVA 355 (365)
T ss_dssp THHHHHHHHHHHHTCCTTHHHHHHHHH-HHHC
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHH-HHHH
Confidence 9999999999875 444556666664 5543
No 37
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.76 E-value=6.3e-17 Score=168.61 Aligned_cols=159 Identities=17% Similarity=0.049 Sum_probs=111.9
Q ss_pred CceEEEEEecccccCCHHHHHHHHHHHHh-cCcEEE-EEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhc
Q 009217 354 STIVVGCIFSDVSDVFLENLKAVVRGAKM-RGIQFV-FTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG 431 (540)
Q Consensus 354 ~~~lv~~vgrl~~~KG~~~Li~A~~~l~~-~~~~lv-i~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~ 431 (540)
+..++++.|++. .++.+.+.++++.+.+ .+++++ ++|.+++. +.++ .++ ++|++.+..++. .+|+.
T Consensus 232 ~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~---~~l~----~~~-~~v~~~~~~~~~---~~l~~ 299 (430)
T 2iyf_A 232 EKVVLVSLGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTP---AELG----ELP-DNVEVHDWVPQL---AILRQ 299 (430)
T ss_dssp SEEEEEECTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---CG---GGGC----SCC-TTEEEESSCCHH---HHHTT
T ss_pred CCeEEEEcCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCCh---HHhc----cCC-CCeEEEecCCHH---HHhhc
Confidence 346788999998 6666666666665555 378884 67865421 1221 233 689988766654 68999
Q ss_pred CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCCC--CHHHHHHHHHHHhcCH
Q 009217 432 SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNP 505 (540)
Q Consensus 432 aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~~ 505 (540)
||+||..|- +.+++|||++|+|+|++.. ++ ..+.+.+ .| .|+++++. ++++|+++|.++++|+
T Consensus 300 ad~~v~~~G----~~t~~Ea~~~G~P~i~~p~--~~~q~~~a~~~~~----~g-~g~~~~~~~~~~~~l~~~i~~ll~~~ 368 (430)
T 2iyf_A 300 ADLFVTHAG----AGGSQEGLATATPMIAVPQ--AVDQFGNADMLQG----LG-VARKLATEEATADLLRETALALVDDP 368 (430)
T ss_dssp CSEEEECCC----HHHHHHHHHTTCCEEECCC--SHHHHHHHHHHHH----TT-SEEECCCC-CCHHHHHHHHHHHHHCH
T ss_pred cCEEEECCC----ccHHHHHHHhCCCEEECCC--ccchHHHHHHHHH----cC-CEEEcCCCCCCHHHHHHHHHHHHcCH
Confidence 999999763 3789999999999999876 44 2344432 12 36788765 7899999999999999
Q ss_pred HHHHHHHHHHHh--ccCChHHHHHHHHHHHHHH
Q 009217 506 LSWKRKIKDAML--QDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 506 ~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~~ 536 (540)
+.++++++.+.+ +.++|+++++.+ +++|+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 400 (430)
T 2iyf_A 369 EVARRLRRIQAEMAQEGGTRRAADLI-EAELPA 400 (430)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHH-HTTSCC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHH-HHHhhc
Confidence 999888877654 567999998885 776643
No 38
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.76 E-value=3e-18 Score=176.74 Aligned_cols=155 Identities=16% Similarity=0.054 Sum_probs=96.3
Q ss_pred ceEEEEEecccccC-------CHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 009217 355 TIVVGCIFSDVSDV-------FLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHL 427 (540)
Q Consensus 355 ~~lv~~vgrl~~~K-------G~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~ 427 (540)
.++++++|++...| +.+.+.++++.+.+.++++++++.+.+ .+.++ .++ ++|++.+..+ ...
T Consensus 228 ~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~---~~~l~----~~~-~~v~~~~~~~---~~~ 296 (398)
T 4fzr_A 228 PRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKL---AQTLQ----PLP-EGVLAAGQFP---LSA 296 (398)
T ss_dssp CEEECC----------------CCSHHHHHHHGGGGTCEEEECCCC---------------CC-TTEEEESCCC---HHH
T ss_pred CEEEEEccCcccccccccccchHHHHHHHHHHHHhCCCEEEEEeCCcc---hhhhc----cCC-CcEEEeCcCC---HHH
Confidence 46777889997655 333333444444444899999884431 22232 233 7999887664 457
Q ss_pred HHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecC--CCccccceeccCCccccceeecCCC--CHHHHHHHHHHHhc
Q 009217 428 IFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSS--DIEFRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKN 503 (540)
Q Consensus 428 ~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~--~gg~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~ 503 (540)
+++.||++|.. +.+.+++|||++|+|+|+.... -.+..+.+.. +..|+++++. ++++|+++|.++++
T Consensus 297 ll~~ad~~v~~----gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~-----~g~g~~~~~~~~~~~~l~~ai~~ll~ 367 (398)
T 4fzr_A 297 IMPACDVVVHH----GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHA-----AGAGVEVPWEQAGVESVLAACARIRD 367 (398)
T ss_dssp HGGGCSEEEEC----CCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHH-----TTSEEECC-------CHHHHHHHHHH
T ss_pred HHhhCCEEEec----CCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHH-----cCCEEecCcccCCHHHHHHHHHHHHh
Confidence 88999999964 4468899999999999996540 0244444443 2236788765 67899999999999
Q ss_pred CHHHHHHHHHHHHh--ccCChHHHHHHH
Q 009217 504 NPLSWKRKIKDAML--QDFSWDADCNDI 529 (540)
Q Consensus 504 ~~~~~~~~~~~a~~--~~fsw~~~a~~~ 529 (540)
|++.++++++.+.+ ...+|+++++.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (398)
T 4fzr_A 368 DSSYVGNARRLAAEMATLPTPADIVRLI 395 (398)
T ss_dssp CTHHHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999887754 788999988874
No 39
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.69 E-value=6.3e-15 Score=151.65 Aligned_cols=160 Identities=11% Similarity=-0.016 Sum_probs=108.2
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
..++++.|+....+ .+.+.++++.+.+.++++++. |.+.+ .+.++ .++ ++|++.+..+.. ++++.||
T Consensus 232 ~~v~v~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~----~~~-~~v~~~~~~~~~---~ll~~ad 299 (402)
T 3ia7_A 232 PVLLVSLGNQFNEH-PEFFRACAQAFADTPWHVVMAIGGFLD---PAVLG----PLP-PNVEAHQWIPFH---SVLAHAR 299 (402)
T ss_dssp CEEEEECCSCSSCC-HHHHHHHHHHHTTSSCEEEEECCTTSC---GGGGC----SCC-TTEEEESCCCHH---HHHTTEE
T ss_pred CEEEEECCCCCcch-HHHHHHHHHHHhcCCcEEEEEeCCcCC---hhhhC----CCC-CcEEEecCCCHH---HHHhhCC
Confidence 46677889987665 234444444444446787774 53322 11121 122 789987666554 7899999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEec-C--CCccccceeccCCccccceeecCCC--CHHHHHHHHHHHhcCHHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTS-S--DIEFRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNPLSW 508 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~-~--~gg~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~~~~~ 508 (540)
++|..|- ..+++|||++|+|+|+... . -.+..+.+.. .| .|.++++. ++++|++++.++++|++.+
T Consensus 300 ~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~----~g-~g~~~~~~~~~~~~l~~~~~~ll~~~~~~ 370 (402)
T 3ia7_A 300 ACLTHGT----TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIE----LG-LGSVLRPDQLEPASIREAVERLAADSAVR 370 (402)
T ss_dssp EEEECCC----HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHH----TT-SEEECCGGGCSHHHHHHHHHHHHHCHHHH
T ss_pred EEEECCC----HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHH----cC-CEEEccCCCCCHHHHHHHHHHHHcCHHHH
Confidence 9998864 3678999999999997532 0 0233344432 12 25677655 7899999999999999999
Q ss_pred HHHHHHHHh--ccCChHHHHHHHHHHHHHH
Q 009217 509 KRKIKDAML--QDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 509 ~~~~~~a~~--~~fsw~~~a~~~y~~lY~~ 536 (540)
+++.+.+.+ ...+++++++.+ ++++.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 399 (402)
T 3ia7_A 371 ERVRRMQRDILSSGGPARAADEV-EAYLGR 399 (402)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhhCChHHHHHHHH-HHHHhh
Confidence 888776644 678999999985 877764
No 40
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.68 E-value=9e-16 Score=157.69 Aligned_cols=159 Identities=11% Similarity=0.043 Sum_probs=109.3
Q ss_pred ceEEEEEecccccCCH-HHHHHHHHHHHhc-CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcC
Q 009217 355 TIVVGCIFSDVSDVFL-ENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 432 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~-~~Li~A~~~l~~~-~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~a 432 (540)
..++++.|+....|+. ..+++++....+. +++++++|.+.+ .+.++ .++ ++|++.+..+.. .+++.|
T Consensus 219 ~~vlv~~G~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~---~~~l~----~~~-~~v~~~~~~~~~---~ll~~a 287 (391)
T 3tsa_A 219 RRVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEH---RALLT----DLP-DNARIAESVPLN---LFLRTC 287 (391)
T ss_dssp EEEEEECCHHHHHHHCSHHHHHHHHHHHTSTTEEEEEECCGGG---GGGCT----TCC-TTEEECCSCCGG---GTGGGC
T ss_pred CEEEEEcCCCCCcccchHHHHHHHHHhccCCCeEEEEEECCcc---hhhcc----cCC-CCEEEeccCCHH---HHHhhC
Confidence 4566677998765433 5566666555333 789999984431 12221 222 789988766644 356999
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCceEEEecCC--CccccceeccCCccccceeecCC----CCHHHHHHHHHHHhcCHH
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSD--IEFRHFAEFDHESTRFSRFISST----FGNISLSQALEEIKNNPL 506 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~pvI~~~~~~--gg~~e~v~~~~~~~g~~G~l~~~----~d~~~la~ai~~l~~~~~ 506 (540)
|++|..+ .+.+++|||++|+|+|+..... .+..+.+.. +..|+++++ .++++|++++.++++|++
T Consensus 288 d~~v~~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~-----~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~ 358 (391)
T 3tsa_A 288 ELVICAG----GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAA-----AGAGICLPDEQAQSDHEQFTDSIATVLGDTG 358 (391)
T ss_dssp SEEEECC----CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHH-----TTSEEECCSHHHHTCHHHHHHHHHHHHTCTH
T ss_pred CEEEeCC----CHHHHHHHHHhCCCEEecCCcccHHHHHHHHHH-----cCCEEecCcccccCCHHHHHHHHHHHHcCHH
Confidence 9999654 4578999999999999964400 223333432 223678877 788999999999999999
Q ss_pred HHHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 009217 507 SWKRKIKDAML--QDFSWDADCNDIHISAY 534 (540)
Q Consensus 507 ~~~~~~~~a~~--~~fsw~~~a~~~y~~lY 534 (540)
.++++++.+.+ ...+|++++..+ +++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 387 (391)
T 3tsa_A 359 FAAAAIKLSDEITAMPHPAALVRTL-ENTA 387 (391)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHH-HHC-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 99998876654 778999998885 6554
No 41
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.67 E-value=2.5e-15 Score=154.90 Aligned_cols=153 Identities=11% Similarity=-0.017 Sum_probs=108.6
Q ss_pred ceEEEEEeccccc-CCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSD-VFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~-KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
.+++++.|++... ++.+.+.++++.+.+.++++++++.+.+ .+.++ .++ ++|++.+..+ ...+++.||
T Consensus 233 ~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~---~~~l~----~~~-~~v~~~~~~~---~~~ll~~ad 301 (398)
T 3oti_A 233 PEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLD---ISPLG----TLP-RNVRAVGWTP---LHTLLRTCT 301 (398)
T ss_dssp CEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSC---CGGGC----SCC-TTEEEESSCC---HHHHHTTCS
T ss_pred CEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcC---hhhhc----cCC-CcEEEEccCC---HHHHHhhCC
Confidence 4677788999765 4666777777766666899999985532 11121 222 7899886664 346789999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEE----ecCCCccc--cceeccCCccccceeecCCC--CHHHHHHHHHHHhcCH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAV----TSSDIEFR--HFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNP 505 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~----~~~~gg~~--e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~~ 505 (540)
+||.. +-+.+++|||++|+|+|+. +. .+.. +.+.. ...|+++++. ++++|+ ++++|+
T Consensus 302 ~~v~~----~G~~t~~Eal~~G~P~v~~p~~~dq--~~~a~~~~~~~-----~g~g~~~~~~~~~~~~l~----~ll~~~ 366 (398)
T 3oti_A 302 AVVHH----GGGGTVMTAIDAGIPQLLAPDPRDQ--FQHTAREAVSR-----RGIGLVSTSDKVDADLLR----RLIGDE 366 (398)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCCTTCC--SSCTTHHHHHH-----HTSEEECCGGGCCHHHHH----HHHHCH
T ss_pred EEEEC----CCHHHHHHHHHhCCCEEEcCCCchh--HHHHHHHHHHH-----CCCEEeeCCCCCCHHHHH----HHHcCH
Confidence 99975 4457899999999999994 33 5555 66653 2235777655 455555 788899
Q ss_pred HHHHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 009217 506 LSWKRKIKDAML--QDFSWDADCNDIHISAY 534 (540)
Q Consensus 506 ~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY 534 (540)
+.++++++.+.+ ...+|+.++..+ +++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~ 396 (398)
T 3oti_A 367 SLRTAAREVREEMVALPTPAETVRRI-VERI 396 (398)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHH-HHHh
Confidence 999998877654 788999999885 7654
No 42
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.63 E-value=7e-14 Score=144.71 Aligned_cols=160 Identities=13% Similarity=0.048 Sum_probs=105.3
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEE-EecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi-~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
..++++.|+...... +.+..+++.+.+.++++++ +|.+.+. +.++ .++ ++|++.+..+.. .+++.||
T Consensus 248 ~~v~v~~Gs~~~~~~-~~~~~~~~al~~~~~~~v~~~g~~~~~---~~l~----~~~-~~v~~~~~~~~~---~ll~~ad 315 (415)
T 3rsc_A 248 PVVLVSLGTTFNDRP-GFFRDCARAFDGQPWHVVMTLGGQVDP---AALG----DLP-PNVEAHRWVPHV---KVLEQAT 315 (415)
T ss_dssp CEEEEECTTTSCCCH-HHHHHHHHHHTTSSCEEEEECTTTSCG---GGGC----CCC-TTEEEESCCCHH---HHHHHEE
T ss_pred CEEEEECCCCCCChH-HHHHHHHHHHhcCCcEEEEEeCCCCCh---HHhc----CCC-CcEEEEecCCHH---HHHhhCC
Confidence 466778888865532 3344444444444688888 4543221 1121 222 689988666644 6789999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEecC--CCccccceeccCCccccceeecCCC--CHHHHHHHHHHHhcCHHHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTSS--DIEFRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNPLSWK 509 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~~--~gg~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~~~~~~ 509 (540)
++|..+- ..+++|||++|+|+|+.... -....+.+.. .| .|..+++. ++++|+++|.++++|++.++
T Consensus 316 ~~v~~~G----~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~----~g-~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 386 (415)
T 3rsc_A 316 VCVTHGG----MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQ----LG-LGAVLPGEKADGDTLLAAVGAVAADPALLA 386 (415)
T ss_dssp EEEESCC----HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHH----HT-CEEECCGGGCCHHHHHHHHHHHHTCHHHHH
T ss_pred EEEECCc----HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHH----cC-CEEEcccCCCCHHHHHHHHHHHHcCHHHHH
Confidence 9998763 36789999999999995430 0122333332 12 24666654 78999999999999999998
Q ss_pred HHHHHHHh--ccCChHHHHHHHHHHHHHH
Q 009217 510 RKIKDAML--QDFSWDADCNDIHISAYTA 536 (540)
Q Consensus 510 ~~~~~a~~--~~fsw~~~a~~~y~~lY~~ 536 (540)
++.+.+.+ ...+++++++.+ ++++.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 414 (415)
T 3rsc_A 387 RVEAMRGHVRRAGGAARAADAV-EAYLAR 414 (415)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHH-HHHhhc
Confidence 88776544 678888888885 776653
No 43
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.56 E-value=8e-13 Score=135.26 Aligned_cols=148 Identities=10% Similarity=-0.021 Sum_probs=101.5
Q ss_pred ceEEEEEeccccc-------CCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 009217 355 TIVVGCIFSDVSD-------VFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHL 427 (540)
Q Consensus 355 ~~lv~~vgrl~~~-------KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~ 427 (540)
..++++.|++... +.+..+++|+.. .++++++++ |+ + ..+.++ .++ ++|.+ +..+. .+
T Consensus 211 ~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~-g~-~-~~~~l~----~~~-~~v~~-~~~~~---~~ 275 (384)
T 2p6p_A 211 QRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR---WDVELIVAA-PD-T-VAEALR----AEV-PQARV-GWTPL---DV 275 (384)
T ss_dssp CEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT---TTCEEEEEC-CH-H-HHHHHH----HHC-TTSEE-ECCCH---HH
T ss_pred CEEEEECCCCCccccccccHHHHHHHHHHHhc---CCcEEEEEe-CC-C-CHHhhC----CCC-CceEE-cCCCH---HH
Confidence 4678889998875 556666666654 378998876 32 1 222232 243 68888 66653 35
Q ss_pred HHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCCC--CHHHHHHHHHHH
Q 009217 428 IFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISSTF--GNISLSQALEEI 501 (540)
Q Consensus 428 ~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l 501 (540)
+|+.||+||..+ .+.+++|||++|+|+|+... ++ ..+.+.. .| .|+++++. ++++|+++|.++
T Consensus 276 ~l~~~d~~v~~~----G~~t~~Ea~~~G~P~v~~p~--~~dq~~~a~~~~~----~g-~g~~~~~~~~~~~~l~~~i~~l 344 (384)
T 2p6p_A 276 VAPTCDLLVHHA----GGVSTLTGLSAGVPQLLIPK--GSVLEAPARRVAD----YG-AAIALLPGEDSTEAIADSCQEL 344 (384)
T ss_dssp HGGGCSEEEECS----CTTHHHHHHHTTCCEEECCC--SHHHHHHHHHHHH----HT-SEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCCEEEeCC----cHHHHHHHHHhCCCEEEccC--cccchHHHHHHHH----CC-CeEecCcCCCCHHHHHHHHHHH
Confidence 789999999974 34689999999999999875 33 3444432 12 35777654 689999999999
Q ss_pred hcCHHHHHHHHHHHHh--ccCChHHHHHH
Q 009217 502 KNNPLSWKRKIKDAML--QDFSWDADCND 528 (540)
Q Consensus 502 ~~~~~~~~~~~~~a~~--~~fsw~~~a~~ 528 (540)
++|++.++++.+.+.+ ..-.-++++..
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (384)
T 2p6p_A 345 QAKDTYARRAQDLSREISGMPLPATVVTA 373 (384)
T ss_dssp HHCHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999998888776644 33345555544
No 44
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.53 E-value=6.7e-14 Score=143.05 Aligned_cols=201 Identities=12% Similarity=0.068 Sum_probs=134.3
Q ss_pred hhccceeeccccchhhhhhcccCCCchHHhhhccCceEEeccC-CCCCCCCCCCCcccccccCcccccCcHHHHHHHHHH
Q 009217 268 VYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQDKLLVAPCG-FDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQ 346 (540)
Q Consensus 268 ~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~ki~vI~nG-vd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~ 346 (540)
+.+|.+++.|+..++.+... | + +++++.++.|. +|...+.. ....+.+++++
T Consensus 145 ~~a~~~~~~te~~~~~l~~~--G--~------~~~~I~vtGnp~~D~~~~~~-----------------~~~~~~~~~~~ 197 (385)
T 4hwg_A 145 HISDVNITLTEHARRYLIAE--G--L------PAELTFKSGSHMPEVLDRFM-----------------PKILKSDILDK 197 (385)
T ss_dssp HHCSEEEESSHHHHHHHHHT--T--C------CGGGEEECCCSHHHHHHHHH-----------------HHHHHCCHHHH
T ss_pred hhhceeecCCHHHHHHHHHc--C--C------CcCcEEEECCchHHHHHHhh-----------------hhcchhHHHHH
Confidence 45788888888777766542 2 2 46789999884 34211100 01134457888
Q ss_pred hCCCCCCCceEEEEEeccc---ccCCHHHHHHHHHHHHhc-CcEEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEEecC
Q 009217 347 LGLSKDASTIVVGCIFSDV---SDVFLENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEELK-DGIVIFVDSYD 421 (540)
Q Consensus 347 ~gl~~~~~~~lv~~vgrl~---~~KG~~~Li~A~~~l~~~-~~~lvi~G~g~~~~~~~~l~~l~~~~~-~~~v~f~~~~~ 421 (540)
+|++.+ ..+++..+|.. ..|++..+++|+..+.+. ++++++.. + |...+.++++...+. .++|++++.++
T Consensus 198 lgl~~~--~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~-~--p~~~~~l~~~~~~~~~~~~v~l~~~lg 272 (385)
T 4hwg_A 198 LSLTPK--QYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFST-H--PRTKKRLEDLEGFKELGDKIRFLPAFS 272 (385)
T ss_dssp TTCCTT--SEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEE-C--HHHHHHHHTSGGGGGTGGGEEECCCCC
T ss_pred cCCCcC--CEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEEC-C--hHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 998642 35566667743 447788999999988653 78877765 3 334444443300011 25898887777
Q ss_pred hHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 422 DALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 422 ~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
......+++.||+++.+| |.++.||+++|+|+|+.+. ..+.+|.++. | ++++++ .|+++|.+++..+
T Consensus 273 ~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pvv~~~~-~ter~e~v~~-----G-~~~lv~-~d~~~i~~ai~~l 339 (385)
T 4hwg_A 273 FTDYVKLQMNAFCILSDS-----GTITEEASILNLPALNIRE-AHERPEGMDA-----G-TLIMSG-FKAERVLQAVKTI 339 (385)
T ss_dssp HHHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCEEECSS-SCSCTHHHHH-----T-CCEECC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCEEEcCC-Cccchhhhhc-----C-ceEEcC-CCHHHHHHHHHHH
Confidence 666789999999999888 5578999999999999754 1235666652 3 246664 3889999999999
Q ss_pred hcCHHHHHHHHH
Q 009217 502 KNNPLSWKRKIK 513 (540)
Q Consensus 502 ~~~~~~~~~~~~ 513 (540)
++|++.+++|++
T Consensus 340 l~d~~~~~~m~~ 351 (385)
T 4hwg_A 340 TEEHDNNKRTQG 351 (385)
T ss_dssp HTTCBTTBCCSC
T ss_pred HhChHHHHHhhc
Confidence 999887766643
No 45
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.33 E-value=6.5e-10 Score=115.17 Aligned_cols=156 Identities=13% Similarity=0.013 Sum_probs=101.3
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEE-EecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVF-TGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi-~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
..++++.|+.. .+..+.+.++++.+.+.++++++ +|.+.+. +.++ .++ ++|++.+..+.. .+|+.||
T Consensus 256 ~~v~v~~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~---~~~~----~~~-~~v~~~~~~~~~---~~l~~~d 323 (424)
T 2iya_A 256 PVLLIALGSAF-TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDP---ADLG----EVP-PNVEVHQWVPQL---DILTKAS 323 (424)
T ss_dssp CEEEEECCSSS-CCCHHHHHHHHHHHTTCSSEEEEECCTTSCG---GGGC----SCC-TTEEEESSCCHH---HHHTTCS
T ss_pred CEEEEEcCCCC-cchHHHHHHHHHHHhcCCcEEEEEECCcCCh---HHhc----cCC-CCeEEecCCCHH---HHHhhCC
Confidence 46777889887 44445555555555445788855 5754321 1121 233 689888666644 5899999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCCC--CHHHHHHHHHHHhcCHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKNNPLS 507 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~~~~~ 507 (540)
+||..+ -..+++|||++|+|+|+... .+ ..+.+.. .| .|+.++.. ++++|+++|.++++|++.
T Consensus 324 ~~v~~~----G~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~----~g-~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 392 (424)
T 2iya_A 324 AFITHA----GMGSTMEALSNAVPMVAVPQ--IAEQTMNAERIVE----LG-LGRHIPRDQVTAEKLREAVLAVASDPGV 392 (424)
T ss_dssp EEEECC----CHHHHHHHHHTTCCEEECCC--SHHHHHHHHHHHH----TT-SEEECCGGGCCHHHHHHHHHHHHHCHHH
T ss_pred EEEECC----chhHHHHHHHcCCCEEEecC--ccchHHHHHHHHH----CC-CEEEcCcCCCCHHHHHHHHHHHHcCHHH
Confidence 999853 23789999999999999865 32 1222322 12 24666543 788999999999999988
Q ss_pred HHHHHHHHHh--ccCChHHHHHHHHHHHH
Q 009217 508 WKRKIKDAML--QDFSWDADCNDIHISAY 534 (540)
Q Consensus 508 ~~~~~~~a~~--~~fsw~~~a~~~y~~lY 534 (540)
++++.+.+.+ .....+++++.+ +++.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 420 (424)
T 2iya_A 393 AERLAAVRQEIREAGGARAAADIL-EGIL 420 (424)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHH-HHHH
Confidence 8877765433 445666666664 5544
No 46
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.31 E-value=1.4e-10 Score=119.45 Aligned_cols=153 Identities=14% Similarity=0.012 Sum_probs=99.4
Q ss_pred ceEEEEEeccc-ccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDV-SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~-~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
.+++++.|++. +.+.++.+++++..+ +.++++.+...+.. .+ .. .++|++.+..+. ..++..||
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~---~~~vv~~~g~~~~~---~~-----~~-~~~v~~~~~~~~---~~ll~~~d 286 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQ---GRRVVLSSGWAGLG---RI-----DE-GDDCLVVGEVNH---QVLFGRVA 286 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHT---TCCEEEECTTTTCC---CS-----SC-CTTEEEESSCCH---HHHGGGSS
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhC---CCEEEEEeCCcccc---cc-----cC-CCCEEEecCCCH---HHHHhhCc
Confidence 45677789887 666566666666543 67888775222110 00 11 278988866654 35779999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEecCCCccc----cceeccCCccccceeecCC--CCHHHHHHHHHHHhcCHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR----HFAEFDHESTRFSRFISST--FGNISLSQALEEIKNNPLS 507 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~----e~v~~~~~~~g~~G~l~~~--~d~~~la~ai~~l~~~~~~ 507 (540)
++|..+- ..+..||+++|+|+|+... ++-. +.+.. .|. |..++. .++++|.++|.++++ ++.
T Consensus 287 ~~v~~gG----~~t~~Eal~~GvP~v~~p~--~~dQ~~na~~~~~----~G~-g~~l~~~~~~~~~l~~ai~~ll~-~~~ 354 (404)
T 3h4t_A 287 AVVHHGG----AGTTTAVTRAGAPQVVVPQ--KADQPYYAGRVAD----LGV-GVAHDGPTPTVESLSAALATALT-PGI 354 (404)
T ss_dssp EEEECCC----HHHHHHHHHHTCCEEECCC--STTHHHHHHHHHH----HTS-EEECSSSSCCHHHHHHHHHHHTS-HHH
T ss_pred EEEECCc----HHHHHHHHHcCCCEEEcCC--cccHHHHHHHHHH----CCC-EeccCcCCCCHHHHHHHHHHHhC-HHH
Confidence 9998753 2688999999999999765 3321 11221 122 455543 368899999999998 888
Q ss_pred HHHHHHHHHh-ccCChHHHHHHHHHHHHH
Q 009217 508 WKRKIKDAML-QDFSWDADCNDIHISAYT 535 (540)
Q Consensus 508 ~~~~~~~a~~-~~fsw~~~a~~~y~~lY~ 535 (540)
++++.+.+.. .+-.++++++.+ +++++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~ 382 (404)
T 3h4t_A 355 RARAAAVAGTIRTDGTTVAAKLL-LEAIS 382 (404)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH-HHHHh
Confidence 8888766644 225666666664 55554
No 47
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.22 E-value=8.7e-11 Score=124.11 Aligned_cols=181 Identities=7% Similarity=-0.027 Sum_probs=120.7
Q ss_pred HhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEE--EEecCCChhHHHHHHHHHHHhCC-CcEEEEEec
Q 009217 346 QLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFV--FTGTNKLPSASRALVSFQEELKD-GIVIFVDSY 420 (540)
Q Consensus 346 ~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lv--i~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~ 420 (540)
.+|++.+++.+++++..+. .|..+.+++++.++++ ++..++ ++|.+... ....+++++ +.+. ++|.|.+..
T Consensus 432 ~~~lp~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~-~~~~~~~~~-~~GI~~Rv~F~g~~ 507 (631)
T 3q3e_A 432 DYLLRENPEVVNIGIASTT--MKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGI-THPYVERFI-KSYLGDSATAHPHS 507 (631)
T ss_dssp CCCCCSCCSEEEEEEEECS--TTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGG-GHHHHHHHH-HHHHGGGEEEECCC
T ss_pred cccCCcCCCeEEEEECCcc--ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchh-hHHHHHHHH-HcCCCccEEEcCCC
Confidence 3566654346888888886 5668899999998886 354443 35633211 122333322 2332 799999888
Q ss_pred ChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC-CccccceeecCCCCHHHHHHHHH
Q 009217 421 DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQALE 499 (540)
Q Consensus 421 ~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~-~~~g~~G~l~~~~d~~~la~ai~ 499 (540)
+.++....|+.+|+|+-|+.+++ |++.+|||++|+|||+..- +++.+-+.... ...|..++++ ..+.+++.+...
T Consensus 508 p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVTl~G--~~~asRvgaSlL~~~GLpE~LI-A~d~eeYv~~Av 583 (631)
T 3q3e_A 508 PYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVCKTG--AEVHEHIDEGLFKRLGLPEWLI-ANTVDEYVERAV 583 (631)
T ss_dssp CHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEEECC--SSHHHHHHHHHHHHTTCCGGGE-ESSHHHHHHHHH
T ss_pred CHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEeccC--CcHHHHhHHHHHHhcCCCccee-cCCHHHHHHHHH
Confidence 88887889999999999998765 9999999999999998753 44443332100 0024444433 235778999999
Q ss_pred HHhcCHHHHHHHHHHHHhc-----cCChHHHHHHHHHHHHHHH
Q 009217 500 EIKNNPLSWKRKIKDAMLQ-----DFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 500 ~l~~~~~~~~~~~~~a~~~-----~fsw~~~a~~~y~~lY~~l 537 (540)
.+.+|++.+.+++++.++. .|+ ..+++ |+++|+++
T Consensus 584 ~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~-~e~~ye~~ 623 (631)
T 3q3e_A 584 RLAENHQERLELRRYIIENNGLNTLFT--GDPRP-MGQVFLEK 623 (631)
T ss_dssp HHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTH-HHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHH-HHHHHHHH
Confidence 9999999999998877652 343 44445 35555544
No 48
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.07 E-value=1.1e-08 Score=105.55 Aligned_cols=134 Identities=16% Similarity=0.071 Sum_probs=90.4
Q ss_pred ceEEEEEecc-cccCCHHHHHHHHHHHHhcCcEEEEE-ecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcC
Q 009217 355 TIVVGCIFSD-VSDVFLENLKAVVRGAKMRGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGS 432 (540)
Q Consensus 355 ~~lv~~vgrl-~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~a 432 (540)
..++++.|++ .+.+..+.++++++.+ +.+++++ |.+.. . . ..++ ++|.+.+..+.. ++++.|
T Consensus 239 ~~v~v~~Gs~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~-~----~----~~~~-~~v~~~~~~~~~---~~l~~~ 302 (415)
T 1iir_A 239 PPVYLGFGSLGAPADAVRVAIDAIRAH---GRRVILSRGWADL-V----L----PDDG-ADCFAIGEVNHQ---VLFGRV 302 (415)
T ss_dssp CCEEEECC---CCHHHHHHHHHHHHHT---TCCEEECTTCTTC-C----C----SSCG-GGEEECSSCCHH---HHGGGS
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHC---CCeEEEEeCCCcc-c----c----cCCC-CCEEEeCcCChH---HHHhhC
Confidence 3577888998 4777777788887654 5667665 64421 1 1 1222 688887666654 457999
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCC--CCHHHHHHHHHHHhcCHH
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISST--FGNISLSQALEEIKNNPL 506 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~--~d~~~la~ai~~l~~~~~ 506 (540)
|+||..+- ..+++|||++|+|+|+... ++ ..+.+.. .| .|+.++. .++++|+++|.++ +|++
T Consensus 303 d~~v~~~G----~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~----~g-~g~~~~~~~~~~~~l~~~i~~l-~~~~ 370 (415)
T 1iir_A 303 AAVIHHGG----AGTTHVAARAGAPQILLPQ--MADQPYYAGRVAE----LG-VGVAHDGPIPTFDSLSAALATA-LTPE 370 (415)
T ss_dssp SEEEECCC----HHHHHHHHHHTCCEEECCC--STTHHHHHHHHHH----HT-SEEECSSSSCCHHHHHHHHHHH-TSHH
T ss_pred CEEEeCCC----hhHHHHHHHcCCCEEECCC--CCccHHHHHHHHH----CC-CcccCCcCCCCHHHHHHHHHHH-cCHH
Confidence 99998642 3689999999999999765 33 2233322 12 2466654 3788999999999 9998
Q ss_pred HHHHHHHHHH
Q 009217 507 SWKRKIKDAM 516 (540)
Q Consensus 507 ~~~~~~~~a~ 516 (540)
.++++.+.+.
T Consensus 371 ~~~~~~~~~~ 380 (415)
T 1iir_A 371 THARATAVAG 380 (415)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776554
No 49
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.07 E-value=3.6e-09 Score=108.43 Aligned_cols=150 Identities=12% Similarity=-0.035 Sum_probs=91.5
Q ss_pred ceEEEEEecccccCC-HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVF-LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG-~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
.+++++.|.+...++ .+.+.+++..+.+.+.++++.+.+.+... ...++ +++.+....+.. ++++.||
T Consensus 238 ~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~-------~~~~~-~~v~~~~~~p~~---~lL~~~~ 306 (400)
T 4amg_A 238 RRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLAL-------LGELP-ANVRVVEWIPLG---ALLETCD 306 (400)
T ss_dssp CEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCCC-------CCCCC-TTEEEECCCCHH---HHHTTCS
T ss_pred cEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccccc-------cccCC-CCEEEEeecCHH---HHhhhhh
Confidence 356667788765543 44566666666667888888764432110 01122 788877666643 5789999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHH
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWK 509 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~ 509 (540)
+||.- +-..+++|||++|+|+|+... .+ ..+.+.. .|. |+.+++.+ .++++|.++++||+.++
T Consensus 307 ~~v~h----~G~~s~~Eal~~GvP~v~~P~--~~dQ~~na~~v~~----~G~-g~~l~~~~--~~~~al~~lL~d~~~r~ 373 (400)
T 4amg_A 307 AIIHH----GGSGTLLTALAAGVPQCVIPH--GSYQDTNRDVLTG----LGI-GFDAEAGS--LGAEQCRRLLDDAGLRE 373 (400)
T ss_dssp EEEEC----CCHHHHHHHHHHTCCEEECCC-----CHHHHHHHHH----HTS-EEECCTTT--CSHHHHHHHHHCHHHHH
T ss_pred heecc----CCccHHHHHHHhCCCEEEecC--cccHHHHHHHHHH----CCC-EEEcCCCC--chHHHHHHHHcCHHHHH
Confidence 99864 334688999999999999654 33 1122221 232 45655443 46789999999999877
Q ss_pred HHHHHHHh--ccCChHHHHHH
Q 009217 510 RKIKDAML--QDFSWDADCND 528 (540)
Q Consensus 510 ~~~~~a~~--~~fsw~~~a~~ 528 (540)
+..+-+.+ ..=+-...+..
T Consensus 374 ~a~~l~~~~~~~~~~~~~a~~ 394 (400)
T 4amg_A 374 AALRVRQEMSEMPPPAETAAX 394 (400)
T ss_dssp HHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 66543322 22355555555
No 50
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.02 E-value=4.6e-08 Score=100.90 Aligned_cols=134 Identities=16% Similarity=0.074 Sum_probs=89.1
Q ss_pred ceEEEEEeccc---ccCCHHHHHHHHHHHHhcCcEEEEE-ecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh
Q 009217 355 TIVVGCIFSDV---SDVFLENLKAVVRGAKMRGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS 430 (540)
Q Consensus 355 ~~lv~~vgrl~---~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~ 430 (540)
..++++.|++. ..+.++.++++++.+ +.+++++ |.+.. . . ..++ +++.+.+..+. .+++.
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~~-~----~----~~~~-~~v~~~~~~~~---~~ll~ 301 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQ---GRRVILSRGWTEL-V----L----PDDR-DDCFAIDEVNF---QALFR 301 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHT---TCCEEEECTTTTC-C----C----SCCC-TTEEEESSCCH---HHHGG
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHC---CCeEEEEeCCccc-c----c----cCCC-CCEEEeccCCh---HHHhc
Confidence 35677789885 455566666666543 6777775 64321 1 1 1232 68888766664 35779
Q ss_pred cCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCC--CCHHHHHHHHHHHhcC
Q 009217 431 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISST--FGNISLSQALEEIKNN 504 (540)
Q Consensus 431 ~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~--~d~~~la~ai~~l~~~ 504 (540)
.||+||.-+ -..+++||+++|+|+|+... .+ ..+.+.. .| .|+.++. .++++|+++|.++ +|
T Consensus 302 ~~d~~v~~~----G~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~----~g-~g~~~~~~~~~~~~l~~~i~~l-~~ 369 (416)
T 1rrv_A 302 RVAAVIHHG----SAGTEHVATRAGVPQLVIPR--NTDQPYFAGRVAA----LG-IGVAHDGPTPTFESLSAALTTV-LA 369 (416)
T ss_dssp GSSEEEECC----CHHHHHHHHHHTCCEEECCC--SBTHHHHHHHHHH----HT-SEEECSSSCCCHHHHHHHHHHH-TS
T ss_pred cCCEEEecC----ChhHHHHHHHcCCCEEEccC--CCCcHHHHHHHHH----CC-CccCCCCCCCCHHHHHHHHHHh-hC
Confidence 999999843 24699999999999999765 32 1222221 12 2456553 5788999999999 99
Q ss_pred HHHHHHHHHHHH
Q 009217 505 PLSWKRKIKDAM 516 (540)
Q Consensus 505 ~~~~~~~~~~a~ 516 (540)
++.++++.+.+.
T Consensus 370 ~~~~~~~~~~~~ 381 (416)
T 1rrv_A 370 PETRARAEAVAG 381 (416)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 998888876554
No 51
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.95 E-value=2.2e-09 Score=96.37 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=92.5
Q ss_pred ceEEEEEeccc---ccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--
Q 009217 355 TIVVGCIFSDV---SDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF-- 429 (540)
Q Consensus 355 ~~lv~~vgrl~---~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~-- 429 (540)
..++++.|++. +.|++..+++|+..+ +.++++++.+..+ +.++ ++|++.+..+... ++
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~---~~~~~~~~g~~~~----------~~~~-~~v~~~~~~~~~~---~l~~ 84 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQI---PQKVLWRFDGNKP----------DTLG-LNTRLYKWIPQND---LLGH 84 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTS---SSEEEEECCSSCC----------TTCC-TTEEEESSCCHHH---HHTS
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhC---CCeEEEEECCcCc----------ccCC-CcEEEecCCCHHH---HhcC
Confidence 46788899985 667777777776543 6788888744321 1233 6899887777643 44
Q ss_pred hcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCCC--CHHHHHHHHHHHhc
Q 009217 430 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKN 503 (540)
Q Consensus 430 ~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~ 503 (540)
+.||++|.. +.+.+++|||++|+|+|+... .+ ..+.+.. .| .|+++++. ++++|+++|.++++
T Consensus 85 ~~ad~~I~~----~G~~t~~Ea~~~G~P~i~~p~--~~~Q~~na~~l~~----~g-~g~~~~~~~~~~~~l~~~i~~ll~ 153 (170)
T 2o6l_A 85 PKTRAFITH----GGANGIYEAIYHGIPMVGIPL--FADQPDNIAHMKA----RG-AAVRVDFNTMSSTDLLNALKRVIN 153 (170)
T ss_dssp TTEEEEEEC----CCHHHHHHHHHHTCCEEECCC--STTHHHHHHHHHT----TT-SEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CCcCEEEEc----CCccHHHHHHHcCCCEEeccc--hhhHHHHHHHHHH----cC-CeEEeccccCCHHHHHHHHHHHHc
Confidence 899999985 346899999999999999876 31 2333332 12 35777765 78999999999999
Q ss_pred CHHHHHHHHH
Q 009217 504 NPLSWKRKIK 513 (540)
Q Consensus 504 ~~~~~~~~~~ 513 (540)
|++.++++.+
T Consensus 154 ~~~~~~~a~~ 163 (170)
T 2o6l_A 154 DPSYKENVMK 163 (170)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9986665544
No 52
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=98.93 E-value=2.6e-08 Score=107.13 Aligned_cols=210 Identities=16% Similarity=0.133 Sum_probs=142.5
Q ss_pred ccchhhhHHHhhccceeeccccchhhhhhcccCCCchHHhhhccC-ceEEeccCCCCCCCC----CCCCccc----c---
Q 009217 258 HLVNILKGGVVYSNKVVIVSSMHSKGRIIRSLSHGLESTLAIHQD-KLLVAPCGFDSSTWD----PSNDKFL----T--- 325 (540)
Q Consensus 258 ~~~~~~~~~~~~ad~vi~vS~~~~~~~~~~~~~~gl~~~l~~~~~-ki~vI~nGvd~~~~~----p~~~~~l----~--- 325 (540)
..+++-..++..|..|..||.-+.+-++...+ ..+...-+. |+.-+.|||....|- |.-...+ .
T Consensus 466 ~~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~f----~df~~l~P~~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~iG~~~ 541 (879)
T 1ygp_A 466 RQIRMAFLAIVGSHKVNGVVELHSELIKTTIF----KDFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLNDPT 541 (879)
T ss_dssp CEEEHHHHHHHHEEEEEESSHHHHHHHHHTTT----HHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHTTCTT
T ss_pred ceeehHHHHHHhcCceeEehHHHHHHHHHHHh----HHHHHhCCCCcccCcCCCcCCchhhhhcCHHHHHHHHHhcCCCh
Confidence 36888888999999999999876554333221 112222355 999999999877773 3211011 0
Q ss_pred ccc--C----------ccc--c-----cCcHHHHHH----HHHHh-CCCCC-----CCceEEEEEecccccCCHHH-HHH
Q 009217 326 ENY--C----------AED--M-----KGKTVCKVT----LQQQL-GLSKD-----ASTIVVGCIFSDVSDVFLEN-LKA 375 (540)
Q Consensus 326 ~~~--~----------~~~--~-----~~k~~~~~~----lr~~~-gl~~~-----~~~~lv~~vgrl~~~KG~~~-Li~ 375 (540)
..+ + ++| + +-|..+|.. ++++. |+..+ ++....+++-|++.+|..++ ++.
T Consensus 542 ~~W~~d~~~L~~l~~~~~D~~f~~~l~~iK~~nK~~La~~i~~~~~g~~ld~~~~~p~sLfdvq~KR~heYKRq~LniL~ 621 (879)
T 1ygp_A 542 EEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFG 621 (879)
T ss_dssp CGGGTCGGGGGGGGGGGGCTHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCSTTGGGCEEEEEESCCCGGGTHHHHHHH
T ss_pred hhhhhCHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEecCCCCCCCeeeeeeeehhhHhHHHHHHHHH
Confidence 000 0 111 1 123333443 45567 87777 77899999999999999988 677
Q ss_pred HHHHHHh------------------cCcEEEEEecCC-ChhHHH----HHHHHHHHhC-----CC--cEEEEEecChHHH
Q 009217 376 VVRGAKM------------------RGIQFVFTGTNK-LPSASR----ALVSFQEELK-----DG--IVIFVDSYDDALL 425 (540)
Q Consensus 376 A~~~l~~------------------~~~~lvi~G~g~-~~~~~~----~l~~l~~~~~-----~~--~v~f~~~~~~~~~ 425 (540)
.+.++.+ .+.++++.|... ...... .+..+++..+ .+ +|.|+..|+-+..
T Consensus 622 ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~LKVVFlenY~VslA 701 (879)
T 1ygp_A 622 IIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKA 701 (879)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCGGGTTSEEEEEETTCCHHHH
T ss_pred HHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhhCCceEEEEeCCCCHHHH
Confidence 7654421 257888888542 112222 2334444221 14 7999999999988
Q ss_pred HHHHhcCCEEEECCC--CCCCchHHHHHHhcCCceEEEecCCCcccccee
Q 009217 426 HLIFSGSDIILCHSF--HDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAE 473 (540)
Q Consensus 426 ~~~~~~aDi~v~PS~--~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~ 473 (540)
..++.+||+...-|. .|++|..-|.+|..|.+-|++-. |...|+.+
T Consensus 702 e~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlD--GanvEi~e 749 (879)
T 1ygp_A 702 EIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVD--GANVEITR 749 (879)
T ss_dssp HHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESC--THHHHHHH
T ss_pred HHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeeccc--chhHHHHH
Confidence 899999999999997 79999999999999999999887 88888864
No 53
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.69 E-value=4.4e-08 Score=101.96 Aligned_cols=155 Identities=9% Similarity=-0.081 Sum_probs=106.1
Q ss_pred ceEEEEEecccc-----cCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 009217 355 TIVVGCIFSDVS-----DVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF 429 (540)
Q Consensus 355 ~~lv~~vgrl~~-----~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~ 429 (540)
..++++.|++.. .|.+..+++|+..+ ++++++.+.+++ .+.++ .++ ++|++.+..+.. .+|
T Consensus 268 ~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~---~~~~v~~~g~~~---~~~l~----~~~-~~v~~~~~~~~~---~ll 333 (441)
T 2yjn_A 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDV---DAEIIATFDAQQ---LEGVA----NIP-DNVRTVGFVPMH---ALL 333 (441)
T ss_dssp CEEEEEC----------CCSTTTTHHHHHTS---SSEEEECCCTTT---TSSCS----SCC-SSEEECCSCCHH---HHG
T ss_pred CEEEEECCCCcccccChHHHHHHHHHHHHcC---CCEEEEEECCcc---hhhhc----cCC-CCEEEecCCCHH---HHH
Confidence 357778899875 47888888887653 789888763432 11111 222 689888766653 568
Q ss_pred hcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCc----cccceeccCCccccceeecCCC--CHHHHHHHHHHHhc
Q 009217 430 SGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIE----FRHFAEFDHESTRFSRFISSTF--GNISLSQALEEIKN 503 (540)
Q Consensus 430 ~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg----~~e~v~~~~~~~g~~G~l~~~~--d~~~la~ai~~l~~ 503 (540)
+.||++|.. +-+.+++|||++|+|+|+... ++ ..+.+.. .| .|+++++. ++++|+++|.++++
T Consensus 334 ~~ad~~V~~----~G~~t~~Ea~~~G~P~i~~p~--~~dQ~~na~~l~~----~g-~g~~~~~~~~~~~~l~~~i~~ll~ 402 (441)
T 2yjn_A 334 PTCAATVHH----GGPGSWHTAAIHGVPQVILPD--GWDTGVRAQRTQE----FG-AGIALPVPELTPDQLRESVKRVLD 402 (441)
T ss_dssp GGCSEEEEC----CCHHHHHHHHHTTCCEEECCC--SHHHHHHHHHHHH----HT-SEEECCTTTCCHHHHHHHHHHHHH
T ss_pred hhCCEEEEC----CCHHHHHHHHHhCCCEEEeCC--cccHHHHHHHHHH----cC-CEEEcccccCCHHHHHHHHHHHhc
Confidence 999999985 345789999999999999865 33 2333332 12 25677654 78999999999999
Q ss_pred CHHHHHHHHHHHHh--ccCChHHHHHHHHHHHHH
Q 009217 504 NPLSWKRKIKDAML--QDFSWDADCNDIHISAYT 535 (540)
Q Consensus 504 ~~~~~~~~~~~a~~--~~fsw~~~a~~~y~~lY~ 535 (540)
|++.++++.+.+.+ ...+++++++.+ +++..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~ 435 (441)
T 2yjn_A 403 DPAHRAGAARMRDDMLAEPSPAEVVGIC-EELAA 435 (441)
T ss_dssp CHHHHHHHHHHHHHHHTSCCHHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHH
Confidence 99999888776543 677888888885 76654
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.31 E-value=2.1e-05 Score=86.57 Aligned_cols=182 Identities=9% Similarity=-0.013 Sum_probs=129.0
Q ss_pred HHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEEe
Q 009217 344 QQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDS 419 (540)
Q Consensus 344 r~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~~ 419 (540)
|..+|++.+ .+++++..++.+- -+..++++.++++ ++.+|++..... ..++.+++.+++.+. +||.|.+.
T Consensus 514 R~~~gLp~~--~v~f~~fN~~~Ki--~p~~~~~W~~IL~~vP~S~L~Ll~~~~--~~~~~l~~~~~~~gi~~~r~~f~~~ 587 (723)
T 4gyw_A 514 RSQYGLPED--AIVYCNFNQLYKI--DPSTLQMWANILKRVPNSVLWLLRFPA--VGEPNIQQYAQNMGLPQNRIIFSPV 587 (723)
T ss_dssp GGGGTCCTT--SEEEECCSCGGGC--CHHHHHHHHHHHHHCSSEEEEEEETTG--GGHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred hhhcCCCCC--CEEEEeCCccccC--CHHHHHHHHHHHHhCCCCeEEEEeCcH--HHHHHHHHHHHhcCCCcCeEEECCC
Confidence 566788864 5788888887776 5578888888876 588999987442 345677888887774 89999988
Q ss_pred cChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC-CccccceeecCCCCHHHHHHHH
Q 009217 420 YDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH-ESTRFSRFISSTFGNISLSQAL 498 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~-~~~g~~G~l~~~~d~~~la~ai 498 (540)
.+.++-...|+.+|+++=|--|= -|.|.+||+.+|+|||+..- ..+..=+.... ...|..-++ ..+.++..+.-
T Consensus 588 ~~~~~~l~~~~~~Di~LDt~p~~-g~tT~~eal~~GvPvvt~~g--~~~~sR~~~s~l~~~gl~e~i--a~~~~~Y~~~a 662 (723)
T 4gyw_A 588 APKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGTPMVTMPG--ETLASRVAASQLTCLGCLELI--AKNRQEYEDIA 662 (723)
T ss_dssp CCHHHHHHHGGGCSEEECCSSSC-CSHHHHHHHHTTCCEEBCCC--SSGGGTHHHHHHHHHTCGGGB--CSSHHHHHHHH
T ss_pred CCHHHHHHHhCCCeEEeCCCCcC-CHHHHHHHHHcCCCEEEccC--CCccHhHHHHHHHHcCCcccc--cCCHHHHHHHH
Confidence 88777778899999999987774 48999999999998777532 11111111000 002333344 34567788777
Q ss_pred HHHhcCHHHHHHHHHHHHh-----ccCChHHHHHHHHHHHHHHH
Q 009217 499 EEIKNNPLSWKRKIKDAML-----QDFSWDADCNDIHISAYTAI 537 (540)
Q Consensus 499 ~~l~~~~~~~~~~~~~a~~-----~~fsw~~~a~~~y~~lY~~l 537 (540)
..+.+|++.+.++.++-++ .-|+-...++++ ++.|+++
T Consensus 663 ~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~~l-e~a~~~~ 705 (723)
T 4gyw_A 663 VKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMEL-ERLYLQM 705 (723)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHH-HHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCcCcCHHHHHHHH-HHHHHHH
Confidence 7888899888777654322 469999999995 9999876
No 55
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.81 E-value=0.0058 Score=60.67 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCCCCCceEEEEEec-ccccCCHH--HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCC---C
Q 009217 339 CKVTLQQQLGLSKDASTIVVGCIFS-DVSDVFLE--NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKD---G 412 (540)
Q Consensus 339 ~~~~lr~~~gl~~~~~~~lv~~vgr-l~~~KG~~--~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~---~ 412 (540)
.++.+++.+|+..+ +..++++.|. ..+.|... .+.+++..+.+.++++++.| ++. ..+..+++.+..+. .
T Consensus 166 ~~~~~~~~~~~~~~-~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g-~~~--e~~~~~~i~~~~~~~~~~ 241 (348)
T 1psw_A 166 EKSYTCNQFSLSSE-RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFG-SAK--DHEAGNEILAALNTEQQA 241 (348)
T ss_dssp HHHHHHHHTTCCSS-SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECC-CGG--GHHHHHHHHTTSCHHHHT
T ss_pred HHHHHHHHhCCCCC-CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEe-Chh--hHHHHHHHHHhhhhcccc
Confidence 45567778887532 2245556665 44555544 88888888877789999998 432 23444455443320 2
Q ss_pred cEE-EEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 413 IVI-FVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 413 ~v~-f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
++. +.+..+-.++..+++.||++|..+ .|.+-+ |.++|+|+|+--
T Consensus 242 ~~~~l~g~~sl~e~~ali~~a~l~I~~D----sg~~Hl-Aaa~g~P~v~lf 287 (348)
T 1psw_A 242 WCRNLAGETQLDQAVILIAACKAIVTND----SGLMHV-AAALNRPLVALY 287 (348)
T ss_dssp TEEECTTTSCHHHHHHHHHTSSEEEEES----SHHHHH-HHHTTCCEEEEE
T ss_pred ceEeccCcCCHHHHHHHHHhCCEEEecC----CHHHHH-HHHcCCCEEEEE
Confidence 443 344556677789999999999986 366666 999999999864
No 56
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=96.07 E-value=0.046 Score=52.46 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=59.6
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEE
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDII 435 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~ 435 (540)
.++++.|-.++.. ..-++++.+.+..--.++.|.+. + ..+++++.++.. .++.+.+ +.++ +.++|++||++
T Consensus 159 ~ILv~~GG~d~~~---l~~~vl~~L~~~~~i~vv~G~~~-~-~~~~l~~~~~~~--~~v~v~~-~~~~-m~~~m~~aDlv 229 (282)
T 3hbm_A 159 DFFICMGGTDIKN---LSLQIASELPKTKIISIATSSSN-P-NLKKLQKFAKLH--NNIRLFI-DHEN-IAKLMNESNKL 229 (282)
T ss_dssp EEEEECCSCCTTC---HHHHHHHHSCTTSCEEEEECTTC-T-THHHHHHHHHTC--SSEEEEE-SCSC-HHHHHHTEEEE
T ss_pred eEEEEECCCchhh---HHHHHHHHhhcCCCEEEEECCCc-h-HHHHHHHHHhhC--CCEEEEe-CHHH-HHHHHHHCCEE
Confidence 4566777765543 22233333333222345567553 2 355666666544 4788764 4433 56899999999
Q ss_pred EECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 436 LCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 436 v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
|.+ .|.|+.|++++|+|.|....
T Consensus 230 I~~-----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 230 IIS-----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp EEE-----SSHHHHHHHHTTCCEEEECC
T ss_pred EEC-----CcHHHHHHHHcCCCEEEEeC
Confidence 984 36899999999999998643
No 57
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=95.75 E-value=0.075 Score=52.78 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHhCCCCCCCceEEEEEecccccCC--HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec
Q 009217 343 LQQQLGLSKDASTIVVGCIFSDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY 420 (540)
Q Consensus 343 lr~~~gl~~~~~~~lv~~vgrl~~~KG--~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~ 420 (540)
+.+..|+..+ +..+++..|.-.+.|. .+...+.+..+.+.+.++++.| ++. ..+..+++.+..+...+.+.+..
T Consensus 175 ~l~~~g~~~~-~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g-~~~--e~~~~~~i~~~~~~~~~~l~g~~ 250 (349)
T 3tov_A 175 FYSSHGLTDT-DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFG-GPM--DLEMVQPVVEQMETKPIVATGKF 250 (349)
T ss_dssp HHHHTTCCTT-CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECC-CTT--THHHHHHHHHTCSSCCEECTTCC
T ss_pred HHHHcCCCCC-CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEe-Ccc--hHHHHHHHHHhcccccEEeeCCC
Confidence 4455676543 2234445554334444 4578888888877789999988 432 24455666665542234444566
Q ss_pred ChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 421 DDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 421 ~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
+-.++..+++.||++|.+- .|.+-+ |.+.|+|+|+--
T Consensus 251 sl~e~~ali~~a~~~i~~D----sG~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 251 QLGPLAAAMNRCNLLITND----SGPMHV-GISQGVPIVALY 287 (349)
T ss_dssp CHHHHHHHHHTCSEEEEES----SHHHHH-HHTTTCCEEEEC
T ss_pred CHHHHHHHHHhCCEEEECC----CCHHHH-HHhcCCCEEEEE
Confidence 7677889999999999973 366777 899999999963
No 58
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=95.43 E-value=0.055 Score=55.90 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=81.6
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE-ecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--c
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT-GTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--G 431 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~-G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~ 431 (540)
..++++.|..... ..+.+.+.+..+.+.+.+++++ |......+.+.+ .++.+ +|+.+.+..++. .+++ +
T Consensus 272 ~vv~vs~GS~~~~-~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~l~~~~---~~~~~-~~~~v~~w~pq~---~vL~h~~ 343 (456)
T 2c1x_A 272 SVVYISFGTVTTP-PPAEVVALSEALEASRVPFIWSLRDKARVHLPEGF---LEKTR-GYGMVVPWAPQA---EVLAHEA 343 (456)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHTCCEEEECCGGGGGGSCTTH---HHHHT-TTEEEESCCCHH---HHHTSTT
T ss_pred ceEEEecCccccC-CHHHHHHHHHHHHhcCCeEEEEECCcchhhCCHHH---HhhcC-CceEEecCCCHH---HHhcCCc
Confidence 3566667776543 3445555555554456777654 422111111112 22233 678777555543 5677 7
Q ss_pred CCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceeccC--Ccc-ccceeecC--CCCHHHHHHHHHHHhcCHH
Q 009217 432 SDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFDH--EST-RFSRFISS--TFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 432 aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~~--~~~-g~~G~l~~--~~d~~~la~ai~~l~~~~~ 506 (540)
+|+||.=. =..+++||+++|+|.|+... ..|...... +.. |. |..++ ..+.++|+++|.++++|++
T Consensus 344 ~~~fvth~----G~~S~~Eal~~GvP~i~~P~----~~dQ~~Na~~l~~~~g~-g~~l~~~~~~~~~l~~~i~~ll~~~~ 414 (456)
T 2c1x_A 344 VGAFVTHC----GWNSLWESVAGGVPLICRPF----FGDQRLNGRMVEDVLEI-GVRIEGGVFTKSGLMSCFDQILSQEK 414 (456)
T ss_dssp EEEEEECC----CHHHHHHHHHHTCCEEECCC----STTHHHHHHHHHHTSCC-EEECGGGSCCHHHHHHHHHHHHHSHH
T ss_pred CCEEEecC----CcchHHHHHHhCceEEecCC----hhhHHHHHHHHHHHhCe-EEEecCCCcCHHHHHHHHHHHHCCCc
Confidence 88999643 24788999999999999654 233321000 001 22 34444 2467899999999999985
Q ss_pred HHHHHHHHH
Q 009217 507 SWKRKIKDA 515 (540)
Q Consensus 507 ~~~~~~~~a 515 (540)
.+++.+++
T Consensus 415 -~~~~r~~a 422 (456)
T 2c1x_A 415 -GKKLRENL 422 (456)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 34444444
No 59
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=94.76 E-value=0.22 Score=51.25 Aligned_cols=134 Identities=19% Similarity=0.131 Sum_probs=77.6
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHH-HHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRAL-VSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l-~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
..++++.|..... ..+.+.+.+..+.+.+.+|+++-... ..+.+ +.+.++.+ +|+.+.+..++. .+++.+|
T Consensus 274 ~vVyvsfGS~~~~-~~~~~~el~~~l~~~~~~flw~~~~~---~~~~lp~~~~~~~~-~~~~vv~w~Pq~---~vL~h~~ 345 (454)
T 3hbf_A 274 SVVYISFGSVVTP-PPHELTALAESLEECGFPFIWSFRGD---PKEKLPKGFLERTK-TKGKIVAWAPQV---EILKHSS 345 (454)
T ss_dssp CEEEEECCSSCCC-CHHHHHHHHHHHHHHCCCEEEECCSC---HHHHSCTTHHHHTT-TTEEEESSCCHH---HHHHSTT
T ss_pred ceEEEecCCCCcC-CHHHHHHHHHHHHhCCCeEEEEeCCc---chhcCCHhHHhhcC-CceEEEeeCCHH---HHHhhcC
Confidence 3456666776543 34455555555555577887764222 11111 12223333 688877555643 6788899
Q ss_pred --EEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--CCcc-ccceeecCC--CCHHHHHHHHHHHhcCH
Q 009217 434 --IILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--HEST-RFSRFISST--FGNISLSQALEEIKNNP 505 (540)
Q Consensus 434 --i~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--~~~~-g~~G~l~~~--~d~~~la~ai~~l~~~~ 505 (540)
+||.-. --.+.+||+++|+|.|+-.. . .|..... .+.. |. |..++. .+.++|.++|.++++++
T Consensus 346 v~~fvtH~----G~~S~~Eal~~GvP~i~~P~--~--~DQ~~Na~~v~~~~g~-Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 346 VGVFLTHS----GWNSVLECIVGGVPMISRPF--F--GDQGLNTILTESVLEI-GVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp EEEEEECC----CHHHHHHHHHHTCCEEECCC--S--TTHHHHHHHHHTTSCS-EEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred cCeEEecC----CcchHHHHHHcCCCEecCcc--c--ccHHHHHHHHHHhhCe-eEEecCCCCCHHHHHHHHHHHHCCC
Confidence 566432 23678999999999999654 2 2321100 0001 21 345543 56789999999999885
No 60
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=94.43 E-value=0.42 Score=49.60 Aligned_cols=144 Identities=13% Similarity=0.052 Sum_probs=82.5
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCC----h-hHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL----P-SASRALVSFQEELKDGIVIFVDSYDDALLHLIF 429 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~----~-~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~ 429 (540)
..++++.|.... .....+.+.+..+.+.+.+++++-.... . .+.+.+ .++.+ +|+.+....++. .++
T Consensus 296 ~vv~vs~GS~~~-~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~---~~~~~-~~~~v~~~~pq~---~~L 367 (482)
T 2pq6_A 296 SVVYVNFGSTTV-MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF---TNEIA-DRGLIASWCPQD---KVL 367 (482)
T ss_dssp CEEEEECCSSSC-CCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHH---HHHHT-TTEEEESCCCHH---HHH
T ss_pred ceEEEecCCccc-CCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhH---HHhcC-CCEEEEeecCHH---HHh
Confidence 355666677542 2344555555555556788877631110 0 011222 23344 688877655543 478
Q ss_pred hcCCE--EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc--C-CccccceeecC-CCCHHHHHHHHHHHhc
Q 009217 430 SGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD--H-ESTRFSRFISS-TFGNISLSQALEEIKN 503 (540)
Q Consensus 430 ~~aDi--~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~--~-~~~g~~G~l~~-~~d~~~la~ai~~l~~ 503 (540)
+.+++ ||.= +=..+++||+++|+|.|+... . .|..... . +..|. |..++ ..+.++|.++|.++++
T Consensus 368 ~h~~~~~~vth----~G~~s~~Eal~~GvP~i~~P~--~--~dQ~~na~~~~~~~G~-g~~l~~~~~~~~l~~~i~~ll~ 438 (482)
T 2pq6_A 368 NHPSIGGFLTH----CGWNSTTESICAGVPMLCWPF--F--ADQPTDCRFICNEWEI-GMEIDTNVKREELAKLINEVIA 438 (482)
T ss_dssp TSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCC--S--TTHHHHHHHHHHTSCC-EEECCSSCCHHHHHHHHHHHHT
T ss_pred cCCCCCEEEec----CCcchHHHHHHcCCCEEecCc--c--cchHHHHHHHHHHhCE-EEEECCCCCHHHHHHHHHHHHc
Confidence 66555 7753 224788999999999999755 2 2331100 0 01222 34554 3567899999999999
Q ss_pred CHHHHHHHHHHHH
Q 009217 504 NPLSWKRKIKDAM 516 (540)
Q Consensus 504 ~~~~~~~~~~~a~ 516 (540)
|++ .+++.+++.
T Consensus 439 ~~~-~~~~r~~a~ 450 (482)
T 2pq6_A 439 GDK-GKKMKQKAM 450 (482)
T ss_dssp SHH-HHHHHHHHH
T ss_pred CCc-HHHHHHHHH
Confidence 986 344554443
No 61
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=93.45 E-value=0.29 Score=47.70 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=65.5
Q ss_pred eEEEEEecccccCC--HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCC
Q 009217 356 IVVGCIFSDVSDVF--LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSD 433 (540)
Q Consensus 356 ~lv~~vgrl~~~KG--~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aD 433 (540)
.++++.|.-.+.|. .+...+.+..+.+.+.++++.+.+ +...+..+++++.. .++.+.+..+-.+...+++.||
T Consensus 180 ~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~--~~e~~~~~~i~~~~--~~~~l~g~~sl~el~ali~~a~ 255 (326)
T 2gt1_A 180 YAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGA--PHEEERAKRLAEGF--AYVEVLPKMSLEGVARVLAGAK 255 (326)
T ss_dssp EEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSS--HHHHHHHHHHHTTC--TTEEECCCCCHHHHHHHHHTCS
T ss_pred EEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCC--HHHHHHHHHHHhhC--CcccccCCCCHHHHHHHHHhCC
Confidence 34445554334444 447788887776668899887413 23344455555544 3465666677778889999999
Q ss_pred EEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 434 IILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 434 i~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
++|..-. |.+-| |.|.|+|+|+--
T Consensus 256 l~I~~DS----G~~Hl-Aaa~g~P~v~lf 279 (326)
T 2gt1_A 256 FVVSVDT----GLSHL-TAALDRPNITVY 279 (326)
T ss_dssp EEEEESS----HHHHH-HHHTTCCEEEEE
T ss_pred EEEecCC----cHHHH-HHHcCCCEEEEE
Confidence 9999843 67777 677999999863
No 62
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=93.04 E-value=0.6 Score=48.11 Aligned_cols=154 Identities=10% Similarity=0.142 Sum_probs=83.6
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecC
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD 421 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~ 421 (540)
.+.+.+.... ++..++++.|.....-+.+.+.+++..+.+.+.+++++-......+.+.+.+.... + +++.+....+
T Consensus 265 ~~~~wl~~~~-~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~~~~-~-~~~~v~~w~p 341 (463)
T 2acv_A 265 LILKWLDEQP-DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMEL-E-GKGMICGWAP 341 (463)
T ss_dssp HHHHHHHTSC-TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCCGGGSCTTHHHHHHH-H-CSEEEESSCC
T ss_pred hHHHHHhcCC-CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCCcccCChhHHHhhcc-C-CCEEEEccCC
Confidence 3444444332 23356667777762233445555555554557888776422100111122211110 2 5777666555
Q ss_pred hHHHHHHHh--cCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceec--c-CCccccceeec-C-------C
Q 009217 422 DALLHLIFS--GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEF--D-HESTRFSRFIS-S-------T 488 (540)
Q Consensus 422 ~~~~~~~~~--~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~--~-~~~~g~~G~l~-~-------~ 488 (540)
+. .+++ ++|+||.=.- ..+++||+++|+|.|+... ..|.... - .+..|. |..+ + .
T Consensus 342 q~---~vL~h~~~~~fvth~G----~~s~~Eal~~GvP~i~~P~----~~dQ~~Na~~lv~~~g~-g~~l~~~~~~~~~~ 409 (463)
T 2acv_A 342 QV---EVLAHKAIGGFVSHCG----WNSILESMWFGVPILTWPI----YAEQQLNAFRLVKEWGV-GLGLRVDYRKGSDV 409 (463)
T ss_dssp HH---HHHHSTTEEEEEECCC----HHHHHHHHHTTCCEEECCC----STTHHHHHHHHHHTSCC-EEESCSSCCTTCCC
T ss_pred HH---HHhCCCccCeEEecCC----chhHHHHHHcCCCeeeccc----hhhhHHHHHHHHHHcCe-EEEEecccCCCCcc
Confidence 43 4565 7889997532 4789999999999999654 2232110 0 001232 4555 2 2
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHH
Q 009217 489 FGNISLSQALEEIKN-NPLSWKR 510 (540)
Q Consensus 489 ~d~~~la~ai~~l~~-~~~~~~~ 510 (540)
.+.++|.++|.++++ +++.+++
T Consensus 410 ~~~~~l~~ai~~ll~~~~~~r~~ 432 (463)
T 2acv_A 410 VAAEEIEKGLKDLMDKDSIVHKK 432 (463)
T ss_dssp CCHHHHHHHHHHHTCTTCTHHHH
T ss_pred ccHHHHHHHHHHHHhccHHHHHH
Confidence 467899999999997 3555443
No 63
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=90.88 E-value=8.3 Score=34.26 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=96.6
Q ss_pred EEEEEecccccCCHHHHHHHHHHHHhc-CcEEEEEecCCChhHHHHHHHHHHH--------------hC---CCcEEEEE
Q 009217 357 VVGCIFSDVSDVFLENLKAVVRGAKMR-GIQFVFTGTNKLPSASRALVSFQEE--------------LK---DGIVIFVD 418 (540)
Q Consensus 357 lv~~vgrl~~~KG~~~Li~A~~~l~~~-~~~lvi~G~g~~~~~~~~l~~l~~~--------------~~---~~~v~f~~ 418 (540)
+--++||-...||.-.+.+--+..+++ +-.-++-|-...|. +.++.++ .+ +.-..++.
T Consensus 199 inrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspa----fiaikekgipyeyygnreidkmnlapnqpaqild 274 (401)
T 1xv5_A 199 INRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPA----FIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILD 274 (401)
T ss_dssp EEEEECCSCGGGCHHHHHHHHHHTTTTTTCEEEEECCCCSHH----HHHHHHTTCCEEEECGGGGGGCCCSSSCCEEEES
T ss_pred hhhhhcccchhHhHHHHhhHHHHhcCccchhhhhhhhhcCCc----eEEEcccCCchhhcCcchhhhhcCCCCCcchhhh
Confidence 445899999999998888877777765 34455555332232 2222221 11 12334454
Q ss_pred ecChHHHHHHHhcCCEEEECCC------CCCCchHHHHHHhcCCceEEEecCCCccccc-eeccCCccccce-eecCCCC
Q 009217 419 SYDDALLHLIFSGSDIILCHSF------HDPLLQVPLKALKYGAAPIAVTSSDIEFRHF-AEFDHESTRFSR-FISSTFG 490 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~------~E~fglv~lEAma~G~pvI~~~~~~gg~~e~-v~~~~~~~g~~G-~l~~~~d 490 (540)
-|-..++.+-++.+.+--.-|. .-..-.+-+|--|||+.||--... |..-.. ++...-....+| +.++..|
T Consensus 275 cyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkst-genlkfrvdntpltshdsgiiwfdend 353 (401)
T 1xv5_A 275 CYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKST-GENLKFRVDNTPLTSHDSGIIWFDEND 353 (401)
T ss_dssp CCCHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHH-HHHSBCTTTCCBGGGSCCSCEEECTTC
T ss_pred heecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeeccc-CcceEEEecCCcccccCCceEEecCCc
Confidence 4545555566777777766664 245667899999999999886551 211111 221110111223 4578888
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 009217 491 NISLSQALEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 491 ~~~la~ai~~l~~~~~~~~~~~~~a~~ 517 (540)
.++--+.|.++..|..++.+-.+.|.+
T Consensus 354 mestferikelssdralydrerekaye 380 (401)
T 1xv5_A 354 MESTFERIKELSSDRALYDREREKAYE 380 (401)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 888889999999999998888777754
No 64
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=89.83 E-value=2.3 Score=43.95 Aligned_cols=142 Identities=13% Similarity=0.086 Sum_probs=76.4
Q ss_pred ceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCC-------------hhHHHHH-HHHHHHhCCCcEEEEE-e
Q 009217 355 TIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKL-------------PSASRAL-VSFQEELKDGIVIFVD-S 419 (540)
Q Consensus 355 ~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~-------------~~~~~~l-~~l~~~~~~~~v~f~~-~ 419 (540)
..++++.|.... ...+.+.+.+..+.+.+.+++++-..+. ......+ ..+.++.. ++-..+. .
T Consensus 269 ~vvyvs~GS~~~-~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~g~~v~~w 346 (480)
T 2vch_A 269 SVLYVSFGSGGT-LTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTK-KRGFVIPFW 346 (480)
T ss_dssp CEEEEECTTTCC-CCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTT-TTEEEEESC
T ss_pred ceEEEecccccC-CCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHhC-CCeEEEeCc
Confidence 456677788753 3455666666666556788877532211 0010000 01112222 2323344 4
Q ss_pred cChHHHHHHHhcCCE--EEECCCCCCCchHHHHHHhcCCceEEEecCCCccccceecc---CCccccceeecCC-----C
Q 009217 420 YDDALLHLIFSGSDI--ILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRHFAEFD---HESTRFSRFISST-----F 489 (540)
Q Consensus 420 ~~~~~~~~~~~~aDi--~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e~v~~~---~~~~g~~G~l~~~-----~ 489 (540)
.+.. ++++.+++ ||.= +=-.+.+||+++|+|.|+-.. ..|..... .+..|. |..++. .
T Consensus 347 ~Pq~---~vL~h~~v~~fvtH----gG~~S~~Eal~~GvP~i~~P~----~~DQ~~na~~l~~~~G~-g~~l~~~~~~~~ 414 (480)
T 2vch_A 347 APQA---QVLAHPSTGGFLTH----CGWNSTLESVVSGIPLIAWPL----YAEQKMNAVLLSEDIRA-ALRPRAGDDGLV 414 (480)
T ss_dssp CCHH---HHHHSTTEEEEEEC----CCHHHHHHHHHHTCCEEECCC----STTHHHHHHHHHHTTCC-EECCCCCTTSCC
T ss_pred cCHH---HHhCCCCcCeEEec----ccchhHHHHHHcCCCEEeccc----cccchHHHHHHHHHhCe-EEEeecccCCcc
Confidence 4543 67888884 5543 223678999999999999654 23331100 001222 344443 4
Q ss_pred CHHHHHHHHHHHhc---CHHHHHH
Q 009217 490 GNISLSQALEEIKN---NPLSWKR 510 (540)
Q Consensus 490 d~~~la~ai~~l~~---~~~~~~~ 510 (540)
+.++|+++|.++++ +++.+++
T Consensus 415 ~~~~l~~av~~vl~~~~~~~~r~~ 438 (480)
T 2vch_A 415 RREEVARVVKGLMEGEEGKGVRNK 438 (480)
T ss_dssp CHHHHHHHHHHHHTSTHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCcchHHHHHH
Confidence 67899999999998 4544443
No 65
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=85.58 E-value=5.6 Score=33.00 Aligned_cols=115 Identities=11% Similarity=0.069 Sum_probs=69.5
Q ss_pred hcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh-----
Q 009217 382 MRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK----- 453 (540)
Q Consensus 382 ~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma----- 453 (540)
.++.+++|+-+. +.....++.+-+..+...|.. .-+..+..+.+. .-|++++=-. -+--|+.+++.+.
T Consensus 10 ~k~~rILiVDD~--~~~r~~l~~~L~~~G~~~v~~--a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 10 NKNMKILIVDDF--STMRRIVKNLLRDLGFNNTQE--ADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp CTTCCEEEECSC--HHHHHHHHHHHHHTTCCCEEE--ESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred CCCCEEEEEeCC--HHHHHHHHHHHHHcCCcEEEE--ECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCC
Confidence 356788888754 456666777666664233432 223333223333 3577776432 3556788888775
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
..+|+|.... -+-.+..... ...|.++|+..|.++++|.++|.++++
T Consensus 86 ~~ipvI~lTa--~~~~~~~~~~-~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 86 KHLPVLMITA--EAKREQIIEA-AQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TTCCEEEEES--SCCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCeEEEEEC--CCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 4577777543 2333332211 125788899999999999999988753
No 66
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=84.56 E-value=12 Score=30.31 Aligned_cols=113 Identities=14% Similarity=0.034 Sum_probs=65.6
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc-----C
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY-----G 455 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~-----G 455 (540)
..+++|+.+. +.....++.+.++.+ -+|... -+.++....+ ...|++++=.. -+.-|+.+++.+.. .
T Consensus 6 ~~~iLivdd~--~~~~~~l~~~l~~~g-~~v~~~--~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (140)
T 3grc_A 6 RPRILICEDD--PDIARLLNLMLEKGG-FDSDMV--HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRD 80 (140)
T ss_dssp CSEEEEECSC--HHHHHHHHHHHHHTT-CEEEEE--CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTT
T ss_pred CCCEEEEcCC--HHHHHHHHHHHHHCC-CeEEEE--CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCC
Confidence 4577777743 445566666665543 234332 2322222222 34688887544 45567777777664 6
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+|+... ..-.+.........|..+|+..|.+.++|.++|..+++
T Consensus 81 ~~ii~~s~--~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 81 LAIVVVSA--NAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp CEEEEECT--THHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEec--CCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 67777532 22122221011125777899999999999999998864
No 67
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=84.47 E-value=5 Score=43.76 Aligned_cols=110 Identities=15% Similarity=-0.004 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCCCCCceEEEEEeccccc----CC-----HHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHH
Q 009217 338 VCKVTLQQQLGLSKDASTIVVGCIFSDVSD----VF-----LENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEE 408 (540)
Q Consensus 338 ~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~----KG-----~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~ 408 (540)
..++.+++.+|++.+ .++|+|+-.+... +| +..-++.+.+....+..+++-. .|.....+. + ..
T Consensus 523 ~~~~~~~~~~~~~~~--kk~ILyaPT~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~li~r~---Hp~~~~~~~-~-~~ 595 (729)
T 3l7i_A 523 EYLDEIRTHLNLPSD--KKVIMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRM---HYLISNALD-L-SG 595 (729)
T ss_dssp HHHHHHHHHTTCCSS--CEEEEECCCCCGGGCCGGGSSCCCCTTCHHHHHHHHTTTEEEEECC---CHHHHTTCC-C-TT
T ss_pred HHHHHHHHHhCCCCC--CeEEEEeeeeeCCccccccccccchhhHHHHHHHHcCCCeEEEEec---Ccchhcccc-c-cc
Confidence 356778899998754 5788888655443 11 1122344444444566666644 232211110 0 11
Q ss_pred hCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEe
Q 009217 409 LKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 409 ~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~ 462 (540)
+. +.+.....+ ..+.+++..||++|.=. +=++.|++..++|+|-..
T Consensus 596 ~~-~~~~~~~~~--~di~~ll~~aD~lITDy-----SSv~fD~~~l~kPiif~~ 641 (729)
T 3l7i_A 596 YE-NFAIDVSNY--NDVSELFLISDCLITDY-----SSVMFDYGILKRPQFFFA 641 (729)
T ss_dssp CT-TTEEECTTC--SCHHHHHHTCSEEEESS-----CTHHHHHGGGCCCEEEEC
T ss_pred cC-CcEEeCCCC--cCHHHHHHHhCEEEeec-----hHHHHhHHhhCCCEEEec
Confidence 11 344333222 24567889999999632 236899999999999874
No 68
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=84.34 E-value=0.57 Score=47.74 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
...|||++++. | .+|--.-...|+++|+++||+|+++++.
T Consensus 18 ~~~mrIl~~~~---~---~~GHv~p~l~la~~L~~~GheV~~~~~~ 57 (441)
T 2yjn_A 18 GSHMRVVFSSM---A---SKSHLFGLVPLAWAFRAAGHEVRVVASP 57 (441)
T ss_dssp -CCCEEEEECC---S---CHHHHTTTHHHHHHHHHTTCEEEEEECG
T ss_pred CCccEEEEEcC---C---CcchHhHHHHHHHHHHHCCCeEEEEeCc
Confidence 44599998854 1 3454455678999999999999999964
No 69
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=83.31 E-value=2.2 Score=34.15 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=31.2
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
..+.|||+++|.. ..+.+..+..+-++..++|.+|.+..-.++.
T Consensus 3 ~~~~mkIlL~C~a------GmSTsllv~km~~~a~~~gi~v~i~a~~~~~ 46 (108)
T 3nbm_A 3 ASKELKVLVLCAG------SGTSAQLANAINEGANLTEVRVIANSGAYGA 46 (108)
T ss_dssp --CCEEEEEEESS------SSHHHHHHHHHHHHHHHHTCSEEEEEEETTS
T ss_pred cccCceEEEECCC------CCCHHHHHHHHHHHHHHCCCceEEEEcchHH
Confidence 4567999999972 2455666677777888899999998744443
No 70
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=81.41 E-value=1.1 Score=42.74 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=26.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||||+ | ||.|.+=..|++.|.++||+|++++.
T Consensus 1 MkILV-T---------GatGfIG~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 1 MRVLV-G---------GGTGFIGTALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp CEEEE-E---------TTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CEEEE-E---------CCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 88873 3 67777778899999999999999974
No 71
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=80.72 E-value=21 Score=28.86 Aligned_cols=112 Identities=10% Similarity=-0.048 Sum_probs=66.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh---cCCEEEECCCC-C-CCchHHHHHHh--cCC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS---GSDIILCHSFH-D-PLLQVPLKALK--YGA 456 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~---~aDi~v~PS~~-E-~fglv~lEAma--~G~ 456 (540)
+.+++|+.+. +.....++...+..+ -.|. ...+.++....+. ..|++++=... + .-|+.+++.+. ..+
T Consensus 5 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~ 79 (140)
T 3h5i_A 5 DKKILIVEDS--KFQAKTIANILNKYG-YTVE--IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISEL 79 (140)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHTT-CEEE--EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCC
T ss_pred CcEEEEEeCC--HHHHHHHHHHHHHcC-CEEE--EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCC
Confidence 4577777743 455666666666553 2343 2334333334443 35888876543 3 56777776655 367
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+|+... ..-.+.+... ...|..+|+..|.+++.|.++|..+++
T Consensus 80 ~ii~ls~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 80 PVVFLTA--HTEPAVVEKI-RSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CEEEEES--SSSCCCCGGG-GGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CEEEEEC--CCCHHHHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7777543 2222332211 124778899999999999999998864
No 72
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=80.59 E-value=2.2 Score=40.55 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=28.4
Q ss_pred CCCceEEEEEeccccccccccH-HHHHhHHHHHHHHcCCeEEEEe
Q 009217 54 KNGFHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~-~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.++||||+|.. .|. .++. ........++|.+.||+|+++=
T Consensus 20 m~~MKiLII~a--HP~--~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 20 FQSMKVLLIYA--HPE--PRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp --CCEEEEEEC--CSC--TTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhCCeEEEEEe--CCC--CccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56799999987 464 2343 3445566788999999999984
No 73
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=80.44 E-value=2 Score=39.37 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=32.9
Q ss_pred cEEEEEecChHHHHHHHh-cCCEEEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 413 IVIFVDSYDDALLHLIFS-GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 413 ~v~f~~~~~~~~~~~~~~-~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
++... .|.+ .+..+|+ .||++|.=. =..+++|++++|+|.|+...
T Consensus 115 ~v~v~-~f~~-~m~~~l~~~AdlvIsha----GagTv~Eal~~G~P~IvVP~ 160 (224)
T 2jzc_A 115 KVIGF-DFST-KMQSIIRDYSDLVISHA----GTGSILDSLRLNKPLIVCVN 160 (224)
T ss_dssp EEEEC-CSSS-SHHHHHHHHCSCEEESS----CHHHHHHHHHTTCCCCEECC
T ss_pred eEEEe-eccc-hHHHHHHhcCCEEEECC----cHHHHHHHHHhCCCEEEEcC
Confidence 44433 4443 3567899 999999753 35789999999999999654
No 74
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=80.26 E-value=1.3 Score=41.34 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=29.1
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
.+.++||||+.... |=.+.-+..|.++|.+ +|+|.|++|...+
T Consensus 7 ~~~~~m~ILlTNDD-------Gi~apGi~aL~~~l~~-~~~V~VVAP~~~~ 49 (261)
T 3ty2_A 7 TATPKLRLLLSNDD-------GVYAKGLAILAKTLAD-LGEVDVVAPDRNR 49 (261)
T ss_dssp ----CCEEEEECSS-------CTTCHHHHHHHHHHTT-TSEEEEEEESSCC
T ss_pred ccCCCCeEEEEcCC-------CCCCHHHHHHHHHHHh-cCCEEEEecCCCC
Confidence 34566999977654 2223447888999987 7999999997654
No 75
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=78.79 E-value=18 Score=28.81 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=65.5
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHH-HHh--cCCEEEECCC-CCCCchHHHHHHhc-----
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHL-IFS--GSDIILCHSF-HDPLLQVPLKALKY----- 454 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~-~~~--~aDi~v~PS~-~E~fglv~lEAma~----- 454 (540)
..+++|+.+. +...+.++.+.++.+...|.. ..+..+... +.. ..|++++=.. -+.-|+.+++.+..
T Consensus 5 ~~~iLivdd~--~~~~~~l~~~L~~~g~~~v~~--~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~ 80 (129)
T 3h1g_A 5 SMKLLVVDDS--STMRRIIKNTLSRLGYEDVLE--AEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFK 80 (129)
T ss_dssp -CCEEEECSC--HHHHHHHHHHHHHTTCCCEEE--ESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCT
T ss_pred CcEEEEEeCC--HHHHHHHHHHHHHcCCcEEEE--eCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 3567777743 456666776666654223432 223322222 322 3688876433 35567888887753
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.+|+|+... ..-.+.+... ...|..+|+..|.++++|.++|..++.
T Consensus 81 ~~pii~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 81 EIPIIMITA--EGGKAEVITA-LKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp TCCEEEEES--CCSHHHHHHH-HHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred CCeEEEEeC--CCChHHHHHH-HHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 467776543 2222222110 114677899999999999999998865
No 76
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=77.06 E-value=17 Score=29.27 Aligned_cols=110 Identities=6% Similarity=-0.025 Sum_probs=56.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCCCCCCchHHHHHHh--c-CCce
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSFHDPLLQVPLKALK--Y-GAAP 458 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~~E~fglv~lEAma--~-G~pv 458 (540)
..+++|+.+. +.....++...+..+ -+|.. .-+.++....+ ...|++++| +.-|+.+++.+. . .+|+
T Consensus 18 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~i 89 (137)
T 2pln_A 18 SMRVLLIEKN--SVLGGEIEKGLNVKG-FMADV--TESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVV 89 (137)
T ss_dssp CSEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESCHHHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEE
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHHcC-cEEEE--eCCHHHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccE
Confidence 4566666532 334444555444432 23332 22222222222 235777733 334566666654 3 6777
Q ss_pred EEEecCCCccccceeccCCccccceeecCCC-CHHHHHHHHHHHhcC
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTF-GNISLSQALEEIKNN 504 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~-d~~~la~ai~~l~~~ 504 (540)
|+... ..-.+..... ...|..+|+..|. +.++|..+|..++..
T Consensus 90 i~ls~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 90 LVSSD--NPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEES--SCCHHHHHHH-HHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEeC--CCCHHHHHHH-HHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 77533 2222222111 1146778999999 999999999887653
No 77
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=76.74 E-value=28 Score=28.05 Aligned_cols=114 Identities=7% Similarity=-0.091 Sum_probs=64.4
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCC--cEEEEEecChHHHHHHHh-------cCCEEEECCC-CCCCchHHHHHHhc
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDG--IVIFVDSYDDALLHLIFS-------GSDIILCHSF-HDPLLQVPLKALKY 454 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~--~v~f~~~~~~~~~~~~~~-------~aDi~v~PS~-~E~fglv~lEAma~ 454 (540)
.+++|+.+. +.....++.+.+..+ . .|.. ..+.++....+. ..|++++=.. -+.-|+.+++.+..
T Consensus 10 ~~iLivdd~--~~~~~~l~~~l~~~~-~~~~v~~--~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 10 DSVLLIDDD--DIVNFLNTTIIRMTH-RVEEIQS--VTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQ 84 (146)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHTTC-CEEEEEE--ESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred ceEEEEeCC--HHHHHHHHHHHHhcC-CCeeeee--cCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 466777643 345556666655543 2 3322 223333334443 3688887543 45567777776554
Q ss_pred -------CCceEEEecCCCccccceeccCCccc-cceeecCCCCHHHHHHHHHHHhcCHH
Q 009217 455 -------GAAPIAVTSSDIEFRHFAEFDHESTR-FSRFISSTFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 455 -------G~pvI~~~~~~gg~~e~v~~~~~~~g-~~G~l~~~~d~~~la~ai~~l~~~~~ 506 (540)
.+|+|+... ..-.+..... ...| ..+|+..|.+.++|.++|........
T Consensus 85 ~~~~~~~~~~ii~~t~--~~~~~~~~~~-~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSS--SLDPRDQAKA-EASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp HCGGGTTTCEEEEECS--SCCHHHHHHH-HHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred hhhhccCCCeEEEEeC--CCChHHHHHH-HhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 566666533 2222222111 1134 67899999999999999999876543
No 78
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=75.18 E-value=27 Score=28.08 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=40.6
Q ss_pred cCCEEEECCC-CCCCchHHHHHHh-----cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 431 GSDIILCHSF-HDPLLQVPLKALK-----YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 431 ~aDi~v~PS~-~E~fglv~lEAma-----~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
..|++++=.. -+.-|+.+++.+. ..+|+|+... ..-.+.+... ...|..+|+..|.+.++|.++|..++..
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFS--SEHKEAIVNG-LHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEEC--C----CTTTT-TTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEec--CCCHHHHHHH-HhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 4577777543 3334555556554 4667777543 2222222211 1257778999999999999999988754
Q ss_pred H
Q 009217 505 P 505 (540)
Q Consensus 505 ~ 505 (540)
.
T Consensus 123 ~ 123 (140)
T 3n53_A 123 Q 123 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 79
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=75.09 E-value=29 Score=27.82 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=64.1
Q ss_pred cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc-----
Q 009217 383 RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY----- 454 (540)
Q Consensus 383 ~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~----- 454 (540)
...+++|+.+. +...+.++...+..+ -+|.. .-+.++....+. ..|++++=.. .+.-|+.+++.+..
T Consensus 6 ~~~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 80 (142)
T 3cg4_A 6 HKGDVMIVDDD--AHVRIAVKTILSDAG-FHIIS--ADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQ 80 (142)
T ss_dssp CCCEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCT
T ss_pred CCCeEEEEcCC--HHHHHHHHHHHHHCC-eEEEE--eCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccC
Confidence 35677787743 445566666655543 23432 223333333333 3577777543 34457777777654
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
.+|+|+... ..-.+..... ...|..+++..|.+.++|.++|..++
T Consensus 81 ~~pii~~s~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 81 GIAIVMLTA--KNAPDAKMIG-LQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp TEEEEEEEC--TTCCCCSSTT-GGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEC--CCCHHHHHHH-HhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 456666533 2222222211 12577789999999999999998875
No 80
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=74.76 E-value=11 Score=30.75 Aligned_cols=112 Identities=14% Similarity=0.032 Sum_probs=62.1
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc-----C
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY-----G 455 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~-----G 455 (540)
..+++|+.+. +.....++...+..+ -+|.. .-+.++....+ ...|++++=.. .+.-|+.+++.+.. .
T Consensus 8 ~~~iLivd~~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 82 (147)
T 2zay_A 8 WWRIMLVDTQ--LPALAASISALSQEG-FDIIQ--CGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTAS 82 (147)
T ss_dssp CEEEEEECTT--GGGGHHHHHHHHHHT-EEEEE--ESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTT
T ss_pred CceEEEEeCC--HHHHHHHHHHHHHcC-CeEEE--eCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCC
Confidence 4567777743 334445555444443 23332 22222222222 24688877543 34557777777764 5
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+|+... ..-.+..... ...|..+|+..|.+.++|.++|..++.
T Consensus 83 ~pii~ls~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 83 IPVIALSG--RATAKEEAQL-LDMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp SCEEEEES--SCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeC--CCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 67776533 2222222110 014667899999999999999988764
No 81
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=74.63 E-value=16 Score=29.65 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=66.1
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh----cCCEEEECCC-CCCCchHHHHHHh---cCC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS----GSDIILCHSF-HDPLLQVPLKALK---YGA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~----~aDi~v~PS~-~E~fglv~lEAma---~G~ 456 (540)
.+++|+.+. +...+.++.+.+..+ ..|.. .-+.++....+. ..|++++=.. .+.-|+.+++.+. ..+
T Consensus 4 ~~ilivdd~--~~~~~~l~~~l~~~g-~~v~~--~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 78 (143)
T 3jte_A 4 AKILVIDDE--STILQNIKFLLEIDG-NEVLT--ASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHM 78 (143)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTC
T ss_pred CEEEEEcCC--HHHHHHHHHHHHhCC-ceEEE--eCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 467777743 455666776666654 34432 223333333443 5688887543 4556776666654 356
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
|+|+... ..-.+.+... ...|..+|+..|.+.++|..+|..+++..
T Consensus 79 ~ii~ls~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 79 AVIILTG--HGDLDNAILA-MKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp EEEEEEC--TTCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEC--CCCHHHHHHH-HHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 7776543 2222222110 11467789999999999999999887543
No 82
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=74.34 E-value=30 Score=27.34 Aligned_cols=110 Identities=8% Similarity=-0.071 Sum_probs=61.2
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc-----CC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY-----GA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~-----G~ 456 (540)
.+++|+.+. +.....++.+.+ . .-+|.. ..+.++....+ ...|++++=.. -+.-|+.+++.+.. .+
T Consensus 5 ~~ilivdd~--~~~~~~l~~~l~-~-~~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 78 (133)
T 3nhm_A 5 PKVLIVENS--WTMRETLRLLLS-G-EFDCTT--AADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHI 78 (133)
T ss_dssp CEEEEECSC--HHHHHHHHHHHT-T-TSEEEE--ESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CEEEEEcCC--HHHHHHHHHHHh-C-CcEEEE--ECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCC
Confidence 467777743 344445554443 2 134432 22333222333 34688777543 45567777777654 56
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+|+... ..-.+... ....|..+|+..|.+++.|.++|..+++.
T Consensus 79 pii~~s~--~~~~~~~~--~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 79 PVIFVSG--YAPRTEGP--ADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CEEEEES--CCC-------TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeC--CCcHhHHH--HhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 7776543 12222221 12256778999999999999999988753
No 83
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=73.42 E-value=25 Score=27.65 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=63.2
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc-----CCc
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY-----GAA 457 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~-----G~p 457 (540)
+++++.+. +.....++.+.+..+ -.|. ..-+.++....+. ..|++++=.. -+.-|+.+++.+.. .+|
T Consensus 4 ~ILivdd~--~~~~~~l~~~l~~~g-~~v~--~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 4 KVLLVDDS--AVLRKIVSFNLKKEG-YEVI--EAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTT-CEEE--EESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred eEEEEeCC--HHHHHHHHHHHHHCC-cEEE--EeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCC
Confidence 56666643 445556666555543 2343 2233333334443 3588877543 35567777777742 567
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... .+-.+..... ...|..+|+..|.++++|..+|..+++
T Consensus 79 ii~~s~--~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 79 VIVLTA--KGGEEDESLA-LSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEEES--CCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEEec--CCchHHHHHH-HhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 776543 2222222110 114677899999999999999988764
No 84
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=72.82 E-value=30 Score=27.58 Aligned_cols=114 Identities=8% Similarity=-0.082 Sum_probs=65.4
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH-h-c-CCEEEECCC-CCCCchHHHHHHhc----C
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF-S-G-SDIILCHSF-HDPLLQVPLKALKY----G 455 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~-~-~-aDi~v~PS~-~E~fglv~lEAma~----G 455 (540)
..+++|+.+. +.....++.+.+..+ -+|... .+..+....+ . . .|++++=.. .+.-|+..++.+.. .
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~~--~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3hdv_A 7 RPLVLVVDDN--AVNREALILYLKSRG-IDAVGA--DGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAA 81 (136)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHTT-CCEEEE--SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTT
T ss_pred CCeEEEECCC--HHHHHHHHHHHHHcC-ceEEEe--CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCC
Confidence 4677788743 445666666666553 344432 2332222222 2 2 577777543 45567778877654 3
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
+|+|+... ..-.+..... ...|..+|+..|.+.++|.++|.++....
T Consensus 82 ~~ii~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 82 LSIIVVSG--DTDVEEAVDV-MHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp CEEEEEES--SCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCEEEEeC--CCChHHHHHH-HhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 56666543 2222222110 11467789999999999999999987654
No 85
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=72.57 E-value=26 Score=26.70 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=60.3
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh-----cCC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK-----YGA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma-----~G~ 456 (540)
.+++++.+. +...+.+....+..+ -+|... -+.++....+ ...|++++-.. .+.-|+..++.+. ..+
T Consensus 2 ~~iliv~~~--~~~~~~l~~~l~~~g-~~v~~~--~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~ 76 (119)
T 2j48_A 2 GHILLLEEE--DEAATVVCEMLTAAG-FKVIWL--VDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHP 76 (119)
T ss_dssp CEEEEECCC--HHHHHHHHHHHHHTT-CEEEEE--SCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSC
T ss_pred CEEEEEeCC--HHHHHHHHHHHHhCC-cEEEEe--cCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCC
Confidence 356677643 345555665555543 344432 2322222222 24688777543 3445677777765 467
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+|+... ..-.+ .. ...|..+++..|.+.++|.++|..++.
T Consensus 77 ~ii~~~~--~~~~~--~~--~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 77 PLVLFLG--EPPVD--PL--LTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCEEEES--SCCSS--HH--HHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CEEEEeC--CCCch--hh--hhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 7777543 22222 11 114666799999999999998887643
No 86
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=71.84 E-value=38 Score=27.31 Aligned_cols=113 Identities=9% Similarity=-0.077 Sum_probs=66.6
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc-----C
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY-----G 455 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~-----G 455 (540)
..+++|+.+. +.....++.+.+..+ ..+.+....+.++....+. ..|++++=.. -+.-|+.+++.+.. .
T Consensus 5 ~~~ILivdd~--~~~~~~l~~~L~~~~-~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 5 SKRVLVVEDN--PDDIALIRRVLDRKD-IHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp CEEEEEECCC--HHHHHHHHHHHHHTT-CCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCEEEEEeCC--HHHHHHHHHHHHhcC-CCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 4577777743 455666776666654 3322222333333334443 3588887544 34557777777764 5
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCC-CHHHHHHHHHHHh
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTF-GNISLSQALEEIK 502 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~-d~~~la~ai~~l~ 502 (540)
+|+|+... ..-.+.+... ...|..+|+..|. +.+.|.++|..++
T Consensus 82 ~pii~~s~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 82 TPIVILTD--NVSDDRAKQC-MAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp CCEEEEET--TCCHHHHHHH-HHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeC--CCCHHHHHHH-HHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 67777543 2223332111 1146778999999 9999999998875
No 87
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=71.46 E-value=3.3 Score=42.70 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=30.3
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEeecC
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILPKY 100 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~p~~ 100 (540)
.++|||++++. | ..|=-.-...|++.|+++ ||+|+++++..
T Consensus 4 ~~~~~vl~~p~---p---~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~ 45 (480)
T 2vch_A 4 SKTPHVAIIPS---P---GMGHLIPLVEFAKRLVHLHGLTVTFVIAGE 45 (480)
T ss_dssp --CCEEEEECC---S---CHHHHHHHHHHHHHHHHHHCCEEEEEECCS
T ss_pred CCCcEEEEecC---c---chhHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 34578888753 3 245556678999999998 99999998754
No 88
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=70.94 E-value=27 Score=28.36 Aligned_cols=112 Identities=10% Similarity=0.041 Sum_probs=61.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh-------
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK------- 453 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma------- 453 (540)
..+++|+.+. +.....++.+.+..+ -.|.. ..+.++....+. ..|++++=-. -+.-|+.+++.+.
T Consensus 14 ~~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~ 88 (143)
T 3m6m_D 14 SMRMLVADDH--EANRMVLQRLLEKAG-HKVLC--VNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGM 88 (143)
T ss_dssp -CEEEEECSS--HHHHHHHHHHHHC---CEEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTC
T ss_pred cceEEEEeCC--HHHHHHHHHHHHHcC-CeEEE--eCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccC
Confidence 4677777743 344555655555443 23432 223332223332 3688777433 3455777777764
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
..+|+|+... ....+.+... ...|..+|+..|.+.++|.++|..+..
T Consensus 89 ~~~pii~~s~--~~~~~~~~~~-~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 89 RYTPVVVLSA--DVTPEAIRAC-EQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp CCCCEEEEES--CCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred CCCeEEEEeC--CCCHHHHHHH-HHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 1256776543 2323332211 114677899999999999999998754
No 89
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=70.74 E-value=35 Score=27.89 Aligned_cols=111 Identities=11% Similarity=0.049 Sum_probs=66.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCC-cEEEEEecChHHHHHHH-----------hcCCEEEECCC-CCCCchHHHH
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDG-IVIFVDSYDDALLHLIF-----------SGSDIILCHSF-HDPLLQVPLK 450 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~-~v~f~~~~~~~~~~~~~-----------~~aDi~v~PS~-~E~fglv~lE 450 (540)
..+++|+.+. +.....++...+..+.. .|... .+.++....+ ...|++++=.. -+.-|+.+++
T Consensus 4 ~~~ILivddd--~~~~~~l~~~L~~~g~~~~v~~~--~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~ 79 (152)
T 3heb_A 4 SVTIVMIEDD--LGHARLIEKNIRRAGVNNEIIAF--TDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILK 79 (152)
T ss_dssp -CEEEEECCC--HHHHHHHHHHHHHTTCCCCEEEE--SSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHH
T ss_pred CceEEEEeCC--HHHHHHHHHHHHhCCCcceEEEe--CCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHH
Confidence 3577777743 45666777776666421 45432 2333333444 24688887543 4556777887
Q ss_pred HHhc-----CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 451 ALKY-----GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 451 Ama~-----G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
.+.. .+|+|+... ..-.+.+... ...|..+|+..|.+++.|.++|..+
T Consensus 80 ~lr~~~~~~~~pii~~t~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 80 LVKENPHTRRSPVVILTT--TDDQREIQRC-YDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp HHHHSTTTTTSCEEEEES--CCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred HHHhcccccCCCEEEEec--CCCHHHHHHH-HHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 7664 567777543 2222222111 1146778999999999999999887
No 90
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=70.66 E-value=39 Score=26.99 Aligned_cols=113 Identities=8% Similarity=0.002 Sum_probs=64.3
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHH-hCCCc-EEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc----
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEE-LKDGI-VIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY---- 454 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~-~~~~~-v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~---- 454 (540)
..+++|+.+. +.....++...+. .+ -+ |.... +.++....+ ...|++++-.. .+.-|+.+++.+..
T Consensus 8 ~~~iLivdd~--~~~~~~l~~~L~~~~~-~~~v~~~~--~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~ 82 (143)
T 3cnb_A 8 DFSILIIEDD--KEFADMLTQFLENLFP-YAKIKIAY--NPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPAT 82 (143)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHHCT-TCEEEEEC--SHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTT
T ss_pred CceEEEEECC--HHHHHHHHHHHHhccC-ccEEEEEC--CHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccc
Confidence 4677777743 4455666666665 33 23 44332 222222232 24688887644 34457777777654
Q ss_pred -CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 455 -GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 455 -G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
.+|+|+... ..-.+..... ...|..+++..|.+.++|.++|..+++.
T Consensus 83 ~~~~ii~~s~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 83 ANIIVIAMTG--ALTDDNVSRI-VALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTSEEEEEES--SCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred cCCcEEEEeC--CCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 466666533 2222221110 1146778999999999999999887643
No 91
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=70.17 E-value=22 Score=28.47 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=64.0
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc---CCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY---GAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~---G~p 457 (540)
..+++|+.+. +.....++.+.+..+ ..|.... +.++....+ ...|++++=.. .+.-|+..++.+.. .+|
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~~-~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 81 (137)
T 3hdg_A 7 ALKILIVEDD--TDAREWLSTIISNHF-PEVWSAG--DGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPY 81 (137)
T ss_dssp CCCEEEECSC--HHHHHHHHHHHHTTC-SCEEEES--SHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCE
T ss_pred ccEEEEEeCC--HHHHHHHHHHHHhcC-cEEEEEC--CHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCc
Confidence 4577777743 445555666555432 3444332 222222222 34688888644 45567777766543 566
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+|+... ..-.+..... ...|..+|+..|.++++|.++|..+++.
T Consensus 82 ii~~s~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 82 VIVISA--FSEMKYFIKA-IELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp EEECCC--CCCHHHHHHH-HHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEec--CcChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 666432 1212222110 1146778999999999999999998653
No 92
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=69.96 E-value=33 Score=27.47 Aligned_cols=112 Identities=8% Similarity=-0.025 Sum_probs=63.3
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc-----CC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY-----GA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~-----G~ 456 (540)
.+++|+.+. +.....++.+.+..+ -.|.. .-+.++....+ ...|++++=.. -+.-|+.+++.+.. .+
T Consensus 5 ~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 5 HTLLIVDDD--DTVAEMLELVLRGAG-YEVRR--AASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTC
T ss_pred CEEEEEeCC--HHHHHHHHHHHHHCC-CEEEE--eCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCc
Confidence 466667643 445556666555543 23432 22333322333 23588877543 34557777776643 56
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+|+... .+-.+..... ...|..+|+..|.++++|.++|..++..
T Consensus 80 pii~~t~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 80 PILMLTA--QGDISAKIAG-FEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp CEEEEEC--TTCHHHHHHH-HHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred cEEEEec--CCCHHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 7776543 2222222110 0146778999999999999999988754
No 93
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=69.90 E-value=37 Score=26.72 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=62.9
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc----CC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY----GA 456 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~----G~ 456 (540)
..+++|+.+. +.....++.+.++.+ -.|.. ..+.++....+ ...|++++=.. .+.-|+..++.+.. ..
T Consensus 6 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (132)
T 3lte_A 6 SKRILVVDDD--QAMAAAIERVLKRDH-WQVEI--AHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQ 80 (132)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSC
T ss_pred CccEEEEECC--HHHHHHHHHHHHHCC-cEEEE--eCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCC
Confidence 4567777743 445556666555543 24432 22333222232 34688777543 45567777777753 23
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
|+|+.-+ +...+.+... ...|..+|+..|.++++|.++|.......
T Consensus 81 ~~ii~~~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 81 PKILVVS--GLDKAKLQQA-VTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp CEEEEEC--CSCSHHHHHH-HHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred CeEEEEe--CCChHHHHHH-HHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 4554433 2222222110 11467789999999999999999886543
No 94
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=69.82 E-value=8.7 Score=31.54 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=31.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeE-EEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLV-EVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V-~vi~p~~ 100 (540)
||++++.+. .|+. .-.......++.++.++||+| .|+.-..
T Consensus 1 mk~~iiv~~-~p~~--~~~~~~al~~a~a~~~~g~~v~~vff~~d 42 (130)
T 2hy5_A 1 MKFALQINE-GPYQ--HQASDSAYQFAKAALEKGHEIFRVFFYHD 42 (130)
T ss_dssp CEEEEEECS-CTTT--STHHHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred CEEEEEEeC-CCCC--cHHHHHHHHHHHHHHhcCCeeCEEEEech
Confidence 789988864 5652 345677889999999999999 8887543
No 95
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=69.74 E-value=23 Score=29.17 Aligned_cols=114 Identities=8% Similarity=0.011 Sum_probs=62.8
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~p 457 (540)
..+++|+.+. +.....++...+..+ -.|.. .-+.++....+. ..|++++-.. .+.-|+.+++.+. ..+|
T Consensus 7 ~~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 81 (154)
T 2rjn_A 7 NYTVMLVDDE--QPILNSLKRLIKRLG-CNIIT--FTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIE 81 (154)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHTTT-CEEEE--ESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEcCC--HHHHHHHHHHHHHcC-CeEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCc
Confidence 4677777743 345555665555433 23432 223333333433 3588877543 3345666666553 3667
Q ss_pred eEEEecCCCccccceeccCCccc-cceeecCCCCHHHHHHHHHHHhcCH
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTR-FSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g-~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
+|+... ..-.+...... ..| ..+|+..|.+.+.|.++|..++...
T Consensus 82 ii~ls~--~~~~~~~~~~~-~~g~~~~~l~kP~~~~~L~~~i~~~~~~~ 127 (154)
T 2rjn_A 82 RVVISG--YADAQATIDAV-NRGKISRFLLKPWEDEDVFKVVEKGLQLA 127 (154)
T ss_dssp EEEEEC--GGGHHHHHHHH-HTTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEec--CCCHHHHHHHH-hccchheeeeCCCCHHHHHHHHHHHHHHH
Confidence 776532 22222221110 134 6789999999999999999887543
No 96
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=69.56 E-value=4.8 Score=37.36 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCCceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+++|||+.|++. .||+| +.+.+|+.+|+++|+.|.+|=.
T Consensus 3 ~~~~~vI~v~s~------kGGvGKTt~a~~LA~~la~~g~~VlliD~ 43 (257)
T 1wcv_1 3 RAKVRRIALANQ------KGGVGKTTTAINLAAYLARLGKRVLLVDL 43 (257)
T ss_dssp --CCCEEEECCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCEEEEEEeC------CCCchHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 456888888752 37776 5678899999999999998853
No 97
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=69.03 E-value=38 Score=26.24 Aligned_cols=111 Identities=9% Similarity=-0.063 Sum_probs=62.4
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-C-CCCchHHHHHHh-----cC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-H-DPLLQVPLKALK-----YG 455 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~-E~fglv~lEAma-----~G 455 (540)
.+++++.+. +.....++...+..+ -+|... .+.++....+ ...|++++=.. . +.-|+..++.+. ..
T Consensus 6 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~~--~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~ 80 (127)
T 2gkg_A 6 KKILIVESD--TALSATLRSALEGRG-FTVDET--TDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKN 80 (127)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHHT-CEEEEE--CCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTT
T ss_pred CeEEEEeCC--HHHHHHHHHHHHhcC-ceEEEe--cCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccC
Confidence 356666643 344555555555543 244322 2322222222 24687776433 2 345666777664 45
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+|+|+. . ..-.+..... ...|..+++..|.+.++|.++|..+++.
T Consensus 81 ~~ii~~-~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 81 VPIVII-G--NPDGFAQHRK-LKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp SCEEEE-E--CGGGHHHHHH-STTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CCEEEE-e--cCCchhHHHH-HHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 777776 4 3333332211 1256778999999999999999887654
No 98
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=69.02 E-value=27 Score=27.38 Aligned_cols=112 Identities=14% Similarity=0.080 Sum_probs=62.8
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc-----C
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY-----G 455 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~-----G 455 (540)
..+++++.+. +.....++.+.+..+...|... -+..+....+. ..|++++=.. .+.-|+..++.+.. .
T Consensus 4 ~~~ilivdd~--~~~~~~l~~~l~~~~~~~v~~~--~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~ 79 (128)
T 1jbe_A 4 ELKFLVVDDF--STMRRIVRNLLKELGFNNVEEA--EDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSA 79 (128)
T ss_dssp TCCEEEECSC--HHHHHHHHHHHHHTTCCCEEEE--SSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTT
T ss_pred ccEEEEECCC--HHHHHHHHHHHHHcCCcEEEee--CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCC
Confidence 3567777743 4455566666555432234322 23333323333 3588877433 34457777777764 4
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+|+|+... ..-.+.+... ...|..+|+..|.+.++|.++|..++
T Consensus 80 ~~ii~~s~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 80 LPVLMVTA--EAKKENIIAA-AQAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp CCEEEEES--SCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CcEEEEec--CccHHHHHHH-HHhCcCceeecCCCHHHHHHHHHHHH
Confidence 56666532 2222222111 11467789999999999999998775
No 99
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=68.74 E-value=10 Score=31.76 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=32.9
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeE-EEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLV-EVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V-~vi~p~ 99 (540)
..||++++... .|+ ..-.+.....++.++.++||+| .|+.-.
T Consensus 11 ~~~~~~ivv~~-~Py--g~~~a~~Al~~A~aala~g~eV~~VFf~~ 53 (140)
T 2d1p_A 11 GSMRFAIVVTG-PAY--GTQQASSAFQFAQALIADGHELSSVFFYR 53 (140)
T ss_dssp CCCEEEEEECS-CSS--SSSHHHHHHHHHHHHHHTTCEEEEEEECG
T ss_pred CceEEEEEEcC-CCC--CcHHHHHHHHHHHHHHHCCCccCEEEEec
Confidence 45999999875 675 2355677789999999999999 888744
No 100
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=68.70 E-value=41 Score=26.54 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=62.1
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEE-EEEecChHHHHHHHhcCCEEEECCC-CCCCchHHHHHHh---cCCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVI-FVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPLKALK---YGAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~-f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fglv~lEAma---~G~pvI 459 (540)
.+++|+.+. +...+.++.+.++.+ -.+. ......+.....--...|++++-.. .+.-|+..++.+. ..+|+|
T Consensus 2 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 2 LNAIIIDDH--PLAIAAIRNLLIKND-IEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp EEEEEECCC--HHHHHHHHHHHHHTT-EEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred eEEEEEcCC--HHHHHHHHHHHhhCC-cEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 456677643 445666666666543 2332 1212222222112245788887544 3455677776654 355666
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+... ..-.+..... ...|..+|+..|.+++.|.++|..+++.
T Consensus 79 ~~s~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 79 IVSA--KNDHFYGKHC-ADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEEC--C---CTHHHH-HHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EEeC--CCChHHHHHH-HHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 6432 2222222110 1146778999999999999999988653
No 101
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=68.03 E-value=43 Score=26.48 Aligned_cols=112 Identities=12% Similarity=0.002 Sum_probs=65.2
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCC-cEEEEEecChHHHHHHHh---------cCCEEEECCC-CCCCchHHHHHH
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDG-IVIFVDSYDDALLHLIFS---------GSDIILCHSF-HDPLLQVPLKAL 452 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~-~v~f~~~~~~~~~~~~~~---------~aDi~v~PS~-~E~fglv~lEAm 452 (540)
+.+++|+.+. +.....++...+..+.. .|.. .-+.++....+. ..|++++=.. .+.-|+..++.+
T Consensus 2 ~~~ilivdd~--~~~~~~l~~~L~~~~~~~~v~~--~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDN--KADIRLIQEALANSTVPHEVVT--VRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCC--HHHHHHHHHHHHTCSSCCEEEE--ECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhcCCCceEEE--ECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHH
Confidence 3467777743 44556666666654311 3432 223333334444 4788887544 345677777776
Q ss_pred h-----cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 453 K-----YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 453 a-----~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
. ..+|+|+... ..-.+.+... ...|..+++..|.+.+.|.++|..++
T Consensus 78 ~~~~~~~~~pii~ls~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 78 KSDPTLKRIPVVVLST--SINEDDIFHS-YDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp HHSTTGGGSCEEEEES--CCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEec--CCcHHHHHHH-HHhchhheecCCCCHHHHHHHHHHHH
Confidence 5 3567776543 2222222111 11467789999999999999998875
No 102
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=67.95 E-value=10 Score=31.86 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCCCceEEEEE--eccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 52 SKKNGFHIIHIC--TEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 52 ~~~~~mkIl~i~--~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.+++.||+|++- +| .| -.-..+.-|+..|.++||+|+|..
T Consensus 2 ~~~~~m~~LilLGCPE-~P-----vq~p~~lYl~~~Lk~~G~~v~VA~ 43 (157)
T 1kjn_A 2 KTESTGKALMVLGCPE-SP-----VQIPLAIYTSHKLKKKGFRVTVTA 43 (157)
T ss_dssp ----CCEEEEECCCSC-ST-----THHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccceeeeEEecCCC-Cc-----chhhHHHHHHHHHHhcCCeeEEec
Confidence 356779999884 33 23 345667788899999999999986
No 103
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=67.78 E-value=30 Score=28.40 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=41.3
Q ss_pred CCEEEECCC-CCCCchHHHHHHh---cCCceEEEecCCCccccceeccCCccc-cceeecCCCCHHHHHHHHHHHhc
Q 009217 432 SDIILCHSF-HDPLLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTR-FSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g-~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.|++++=.. -+.-|+.+++.+. ..+|+|+... ..-.+.+... ...| ..+|+..|.+.++|..+|..+++
T Consensus 59 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~--~~~~~~~~~~-~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 59 VDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG--DPDLKLIAKA-INEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC--CCCHHHHHHH-HHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC--CCCHHHHHHH-HhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 466666433 3445666666554 4567776532 2222222110 0135 66799999999999999998865
No 104
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=66.96 E-value=25 Score=28.99 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=65.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh-----cC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK-----YG 455 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma-----~G 455 (540)
..+++|+.+. +.....++.+.+..+ -.|.. .-+.++....+. ..|++++-.. -+.-|+.+++.+. ..
T Consensus 7 ~~~ILivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (154)
T 3gt7_A 7 AGEILIVEDS--PTQAEHLKHILEETG-YQTEH--VRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRT 81 (154)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHTTT-CEEEE--ESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCcEEEEeCC--HHHHHHHHHHHHHCC-CEEEE--eCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCC
Confidence 5677888743 445566666665543 23432 233333334443 3588877543 4456777777765 35
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+|+... ..-.+.+... ...|..+|+..|.+.+.|..+|..++.
T Consensus 82 ~pii~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 82 IPVILLTI--LSDPRDVVRS-LECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp SCEEEEEC--CCSHHHHHHH-HHHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEEC--CCChHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 67776543 2222222110 014677899999999999999998864
No 105
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=66.93 E-value=39 Score=27.58 Aligned_cols=116 Identities=8% Similarity=-0.108 Sum_probs=62.2
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh-c--CCEEEECCC-CCCCchHHHHHHh---cCC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS-G--SDIILCHSF-HDPLLQVPLKALK---YGA 456 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~-~--aDi~v~PS~-~E~fglv~lEAma---~G~ 456 (540)
..+++|+.+. +...+.++...+. + -.|.. ..+.++....+. . .|++++=.. -+.-|+.+++.+. ..+
T Consensus 4 ~~~ILivdd~--~~~~~~l~~~L~~-~-~~v~~--~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 77 (151)
T 3kcn_A 4 NERILLVDDD--YSLLNTLKRNLSF-D-FEVTT--CESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNS 77 (151)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHTT-T-SEEEE--ESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSC
T ss_pred CCeEEEEeCC--HHHHHHHHHHhcc-C-ceEEE--eCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCc
Confidence 3567777743 3344445444432 1 23432 223333323333 2 388887543 4555666666554 356
Q ss_pred ceEEEecCCCccccceeccCCccc-cceeecCCCCHHHHHHHHHHHhcCHHHH
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTR-FSRFISSTFGNISLSQALEEIKNNPLSW 508 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g-~~G~l~~~~d~~~la~ai~~l~~~~~~~ 508 (540)
|+|+... ..-.+.+... ...| ..+|+..|.+.++|.++|..+++.....
T Consensus 78 ~ii~~s~--~~~~~~~~~~-~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~~ 127 (151)
T 3kcn_A 78 VYLMLTG--NQDLTTAMEA-VNEGQVFRFLNKPCQMSDIKAAINAGIKQYDLV 127 (151)
T ss_dssp EEEEEEC--GGGHHHHHHH-HHHTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEC--CCCHHHHHHH-HHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666432 1212222110 0135 6679999999999999999987654443
No 106
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=66.78 E-value=4.6 Score=36.37 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEeecC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
.++||++..+ ||.+.| ...|.+.|.+.|++|+|+....
T Consensus 4 ~~k~IllgiT--------Gsiaayk~~~~ll~~L~~~g~eV~vv~T~~ 43 (207)
T 3mcu_A 4 KGKRIGFGFT--------GSHCTYEEVMPHLEKLIAEGAEVRPVVSYT 43 (207)
T ss_dssp TTCEEEEEEC--------SCGGGGTTSHHHHHHHHHTTCEEEEEECC-
T ss_pred CCCEEEEEEE--------ChHHHHHHHHHHHHHHHhCCCEEEEEEehH
Confidence 3468887653 667777 7899999999999999998653
No 107
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=66.69 E-value=44 Score=26.71 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=62.1
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc-----CC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY-----GA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~-----G~ 456 (540)
.+++|+.+. +.....++.+.+..+ -.|. ...+..+....+. ..|++++=.. -+.-|+.+++.+.. .+
T Consensus 4 ~~ILivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (138)
T 3c3m_A 4 YTILVVDDS--PMIVDVFVTMLERGG-YRPI--TAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDI 78 (138)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEE--EESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTS
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHcC-ceEE--EeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCC
Confidence 356667643 445556666555543 2333 2223333323333 3588877443 34457777877753 46
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+|+... .. .........+.|..+|+..|.+.++|.++|..++..
T Consensus 79 ~ii~ls~--~~-~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 79 PVLMLTA--KP-LTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp CEEEEES--SC-CCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CEEEEEC--CC-ChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 6766532 11 111111111245567999999999999999988754
No 108
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=66.69 E-value=7.4 Score=33.30 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=30.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+++... .+|....++..+++.|.+.|++|.++-.
T Consensus 1 Mkv~IvY~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 37 (161)
T 3hly_A 1 MSVLIGYLS-----DYGYSDRLSQAIGRGLVKTGVAVEMVDL 37 (161)
T ss_dssp -CEEEEECT-----TSTTHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CEEEEEEEC-----CChHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 788888642 3699999999999999999999988854
No 109
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=66.67 E-value=40 Score=27.52 Aligned_cols=116 Identities=9% Similarity=0.002 Sum_probs=61.3
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc---CCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY---GAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~---G~p 457 (540)
..+++|+.+. +...+.++.+.+..+ ....+...-+.++....+ ...|++++=.. .+.-|+.+++.+.. .+|
T Consensus 15 ~~~iLivdd~--~~~~~~l~~~L~~~~-~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 91 (152)
T 3eul_A 15 KVRVVVGDDH--PLFREGVVRALSLSG-SVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTR 91 (152)
T ss_dssp CEEEEEECSS--HHHHHHHHHHHHHHS-SEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCE
T ss_pred eEEEEEEcCC--HHHHHHHHHHHhhCC-CeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCe
Confidence 4566666643 344555555555543 111111112222222222 34677776433 34556666666543 566
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
+|+... ..-.+.+... ...|..+|+..|.+.++|.++|..++...
T Consensus 92 ii~~s~--~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 92 VLLISA--HDEPAIVYQA-LQQGAAGFLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp EEEEES--CCCHHHHHHH-HHTTCSEEEETTCCHHHHHHHHHHHHHCC
T ss_pred EEEEEc--cCCHHHHHHH-HHcCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 666533 2222222110 11467789999999999999999987643
No 110
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=66.31 E-value=51 Score=27.10 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=41.4
Q ss_pred CCEEEECCC-CCCCchHHHHHHh---cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 432 SDIILCHSF-HDPLLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.|++++=.. .+.-|+.+++.+. ..+|+|+... ..-.+.+... ...|..+|+..|.+.+.|.++|..+++
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISA--LGKEQLVKDC-LIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEES--CCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEec--cCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 466666433 3444565555543 3567777543 2222322111 114677899999999999999988764
No 111
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=66.20 E-value=52 Score=26.73 Aligned_cols=114 Identities=9% Similarity=0.053 Sum_probs=60.6
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc---CCce
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY---GAAP 458 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~---G~pv 458 (540)
.+++|+.+. +...+.++.+.+..+ +...+...-+.++....+. ..|++++=.. .+.-|+.+++.+.. .+|+
T Consensus 21 ~~iLivdd~--~~~~~~l~~~L~~~~-~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 97 (150)
T 4e7p_A 21 MKVLVAEDQ--SMLRDAMCQLLTLQP-DVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKV 97 (150)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHTST-TEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred cEEEEEcCC--HHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeE
Confidence 456666632 334445555444332 1122222223333323332 3577776543 34556666666543 5667
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+... ..-.+..... ...|..+|+..|.+.+.|.++|..+++.
T Consensus 98 i~ls~--~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 98 VVVTT--FKRAGYFERA-VKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp EEEES--CCCHHHHHHH-HHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred EEEeC--CCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 66543 2222222110 1146778999999999999999988753
No 112
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=65.86 E-value=6 Score=40.71 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.7
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++||+++.. | ..|=-.-+..|++.|+++||+|+++++.
T Consensus 8 ~~~vl~~p~---p---~~GHi~P~l~La~~L~~rG~~VT~v~t~ 45 (482)
T 2pq6_A 8 KPHVVMIPY---P---VQGHINPLFKLAKLLHLRGFHITFVNTE 45 (482)
T ss_dssp CCEEEEECC---S---SHHHHHHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CCEEEEecC---c---cchhHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 479998863 3 2566677899999999999999999865
No 113
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=65.81 E-value=4.9 Score=36.02 Aligned_cols=40 Identities=25% Similarity=0.179 Sum_probs=30.7
Q ss_pred CCCceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEeecCC
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
-.++||++-.+ ||.+.| ...|.+.|.+.|++|+|+.....
T Consensus 5 l~~k~I~lgiT--------Gs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 5 FAGKHVGFGLT--------GSHCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp CTTCEEEEECC--------SCGGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred cCCCEEEEEEE--------ChHHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 34568886543 666666 99999999999999999986543
No 114
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=65.38 E-value=37 Score=26.54 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=62.1
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc-----CC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY-----GA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~-----G~ 456 (540)
.+++|+.+. +...+.++.+.+..+ -+|.. .-+.++....+ ...|++++=.. .+.-|+.+++.+.. .+
T Consensus 4 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~ 78 (127)
T 3i42_A 4 QQALIVEDY--QAAAETFKELLEMLG-FQADY--VMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTS 78 (127)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHHTT-EEEEE--ESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCC
T ss_pred ceEEEEcCC--HHHHHHHHHHHHHcC-CCEEE--ECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCC
Confidence 466777643 445566666666553 23332 22333332333 33688777543 45567777777653 46
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+|+... ..-.+.... ...|..+|+..|.++++|.+++....+.
T Consensus 79 ~ii~~s~--~~~~~~~~~--~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 79 KFVAVSG--FAKNDLGKE--ACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEEEEC--C-CTTCCHH--HHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CEEEEEC--CcchhHHHH--HHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 6666533 222222211 1146667999999999999999887543
No 115
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=64.66 E-value=53 Score=26.26 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=59.7
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh--------
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK-------- 453 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma-------- 453 (540)
.+++|+.+. +.....++.+.+..+ ..|... -+..+....+. ..|++++=-. -+.-|+.+++.+.
T Consensus 11 ~~iLivdd~--~~~~~~l~~~L~~~~-~~v~~~--~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~ 85 (140)
T 3c97_A 11 LSVLIAEDN--DICRLVAAKALEKCT-NDITVV--TNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNT 85 (140)
T ss_dssp CEEEEECCC--HHHHHHHHHHHTTTC-SEEEEE--SSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTC
T ss_pred ceEEEEcCC--HHHHHHHHHHHHHcC-CceEEE--CCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCC
Confidence 467777643 344445555444332 234332 23222222322 4688887543 2345677777665
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
...|+|+... ....+... ..|..+|+..|.++++|.++|..++.
T Consensus 86 ~~~~ii~~s~--~~~~~~~~----~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 86 KRASIIAITA--DTIDDDRP----GAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp CCCCCEEEES--SCCSCCCC----CSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CceEEEEEeC--ccchhHHH----hCChhheEeCCCCHHHHHHHHHHHhC
Confidence 2456666432 22222221 24667899999999999999988764
No 116
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=64.61 E-value=48 Score=25.74 Aligned_cols=111 Identities=10% Similarity=0.016 Sum_probs=60.4
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh--cCCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK--YGAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma--~G~pvI 459 (540)
.+++|+.+. +.....++...+..+ -.|.. ..+.++....+. ..|++++=.. -+.-|+.+++.+. ..+|+|
T Consensus 3 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii 77 (120)
T 3f6p_A 3 KKILVVDDE--KPIADILEFNLRKEG-YEVHC--AHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPII 77 (120)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEE
T ss_pred CeEEEEECC--HHHHHHHHHHHHhCC-EEEEE--eCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 356666643 345555655555543 23432 223333333332 3577776433 3445666666553 356777
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+... ..-.+..... ...|..+|+..|.+.++|..++...+.
T Consensus 78 ~~t~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 78 MLTA--KDSEIDKVIG-LEIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp EEEE--SSCHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred EEEC--CCChHHHHHH-HhCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 6543 2222221110 114777899999999999999887653
No 117
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=64.59 E-value=25 Score=28.25 Aligned_cols=112 Identities=12% Similarity=-0.007 Sum_probs=60.4
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc--CCce
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY--GAAP 458 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~--G~pv 458 (540)
..+++|+.+. +.....++.+.+..+ -.|. ...+..+....+. ..|++++=.. -+.-|+.+++.+.. .+|+
T Consensus 4 ~~~Ilivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGD--KDNCQKLKGFLEEKG-ISID--LAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPI 78 (136)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHTTT-CEEE--EESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCE
T ss_pred CCeEEEEcCC--HHHHHHHHHHHHHCC-CEEE--EECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCE
Confidence 3567777743 345555655555432 2333 2223232223332 3588776433 23346666666643 5667
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+... ..-.+..... ...|..+|+..|.+++.|..+|..++.
T Consensus 79 i~ls~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 79 VYMTY--INEDQSILNA-LNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp EEEES--CCCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEc--CCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 66533 2222222110 114677899999999999999987754
No 118
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=64.03 E-value=34 Score=26.96 Aligned_cols=113 Identities=10% Similarity=0.037 Sum_probs=61.4
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc---CCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY---GAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~---G~p 457 (540)
+.+++|+.+. +.....++.+.+..+ -.+.. ..+.++....+. ..|++++=.. .+.-|+..++.+.. .+|
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 81 (130)
T 3eod_A 7 GKQILIVEDE--QVFRSLLDSWFSSLG-ATTVL--AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTP 81 (130)
T ss_dssp TCEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCC
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhCC-ceEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCC
Confidence 4577788743 445566666666554 34432 234333334443 3588877543 34556777766543 467
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCC-CHHHHHHHHHHHhcC
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTF-GNISLSQALEEIKNN 504 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~-d~~~la~ai~~l~~~ 504 (540)
+|+... ..-.+..... ...|..+|+..|. +.+.|.+++..++..
T Consensus 82 ii~~t~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 82 VLVISA--TENMADIAKA-LRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp EEEEEC--CCCHHHHHHH-HHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred EEEEEc--CCCHHHHHHH-HHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 776543 2222222110 1146778999998 888999999988753
No 119
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=63.99 E-value=28 Score=28.64 Aligned_cols=114 Identities=12% Similarity=-0.064 Sum_probs=63.1
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCCce
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGAAP 458 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~pv 458 (540)
.+++|+.+. +.....++...+..+ -.|.. .-+.++....+. ..|++++-.. .+.-|+..++.+. ..+|+
T Consensus 4 ~~ILivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pi 78 (155)
T 1qkk_A 4 PSVFLIDDD--RDLRKAMQQTLELAG-FTVSS--FASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPM 78 (155)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCE
T ss_pred CEEEEEeCC--HHHHHHHHHHHHHcC-cEEEE--ECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCE
Confidence 466777643 445556666555543 23432 223333222222 3588777543 3445666666654 36777
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHH
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~ 506 (540)
|+... ..-.+..... ...|..+++..|.+.+.|..+|..++....
T Consensus 79 i~ls~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 79 ILVTG--HGDIPMAVQA-IQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEEEC--GGGHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEC--CCChHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 76532 1222222110 114677899999999999999998875443
No 120
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=63.32 E-value=35 Score=27.22 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=60.4
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCCC------CCCchHHHHHHh---
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSFH------DPLLQVPLKALK--- 453 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~~------E~fglv~lEAma--- 453 (540)
.+++|+.+. +.....++...+..+ -.|.. .-+.++....+. ..|++++=... +.-|+..++.+.
T Consensus 4 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 4 GTIIIVDDN--KGVLTAVQLLLKNHF-SKVIT--LSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp CEEEEECSC--HHHHHHHHHHHTTTS-SEEEE--ECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred ceEEEEeCC--HHHHHHHHHHHHhCC-cEEEE--eCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 466777643 344555555544432 23432 223232223333 35777764332 445666666654
Q ss_pred cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 454 YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 454 ~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
..+|+|+... ..-.+..... ...|..+++..|.+.++|.++|..++..
T Consensus 79 ~~~~ii~ls~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 79 RDLPVVLFTA--YADIDLAVRG-IKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TTCCEEEEEE--GGGHHHHHHH-HHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred cCCCEEEEEC--CCCHHHHHHH-HHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 3677776533 1222222110 1146778999999999999999988754
No 121
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=63.23 E-value=27 Score=28.31 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=40.3
Q ss_pred cCCEEEECCC-CCCCchHHHHHHh---cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 431 GSDIILCHSF-HDPLLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 431 ~aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
..|++++=-. -+.-|+.+++.+. ..+|+|+... ..-.+.+... ...|..+|+..|.+.+.|..+|..+++
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTT--DASSQTLLDA-MRAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEES--CCCHHHHHHH-HTTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeC--CCCHHHHHHH-HHhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 3566665432 2233455555443 3567776533 2222222111 125777899999999999999988764
No 122
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=63.05 E-value=34 Score=26.78 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=62.5
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~p 457 (540)
+.+++++.+. +.....++...+..+ -.|.. .-+.++....+. ..|++++=-. ...-|+..++.+. ..+|
T Consensus 3 ~~~ilivdd~--~~~~~~l~~~l~~~~-~~v~~--~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 77 (126)
T 1dbw_A 3 DYTVHIVDDE--EPVRKSLAFMLTMNG-FAVKM--HQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIP 77 (126)
T ss_dssp CCEEEEEESS--HHHHHHHHHHHHHTT-CEEEE--ESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCC
T ss_pred CCEEEEEcCC--HHHHHHHHHHHHhCC-cEEEE--eCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCC
Confidence 3567777743 445556666555543 23432 223333333333 3577776433 2345666666664 3567
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... ..-.+..... ...|..+|+..|.+.++|.++|..++.
T Consensus 78 ii~~s~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 78 SIVITG--HGDVPMAVEA-MKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp EEEEEC--TTCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred EEEEEC--CCCHHHHHHH-HHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 776533 2222222110 114677899999999999999988764
No 123
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=62.99 E-value=10 Score=31.62 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||+++... .+|....++..+++.|.+.|++|+++-..
T Consensus 2 ~ki~I~y~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~~ 39 (148)
T 3f6r_A 2 SKVLIVFGS-----STGNTESIAQKLEELIAAGGHEVTLLNAA 39 (148)
T ss_dssp CEEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCEEEEEETT
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhCCCeEEEEehh
Confidence 688887653 36889999999999999999999988643
No 124
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=62.69 E-value=10 Score=31.54 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=30.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+++... ..|-...++..+++.|.+.|++|+++-.
T Consensus 1 mki~iiy~S-----~~Gnt~~~a~~i~~~l~~~g~~v~~~~~ 37 (147)
T 1f4p_A 1 PKALIVYGS-----TTGNTEYTAETIARELADAGYEVDSRDA 37 (147)
T ss_dssp CEEEEEEEC-----SSSHHHHHHHHHHHHHHHHTCEEEEEEG
T ss_pred CeEEEEEEC-----CcCHHHHHHHHHHHHHHhcCCeeEEEeh
Confidence 788888642 2588899999999999999999998753
No 125
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=62.59 E-value=12 Score=34.61 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=34.4
Q ss_pred HHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 45 LRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 45 ~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+.+|-.......|||++|+.. |. ..|-....+..+++.+.+.|++|+++-.
T Consensus 23 ~~~~~~~~~~~~mkIliI~GS--~r-~~s~t~~La~~~~~~l~~~g~eve~idL 73 (247)
T 2q62_A 23 SASLRPAFSTHRPRILILYGS--LR-TVSYSRLLAEEARRLLEFFGAEVKVFDP 73 (247)
T ss_dssp GGGGCCCCCCSCCEEEEEECC--CC-SSCHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred hhhhhhhccCCCCeEEEEEcc--CC-CCCHHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 344544455667999999874 42 2233455666678888888999998853
No 126
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=62.41 E-value=57 Score=25.86 Aligned_cols=113 Identities=13% Similarity=-0.064 Sum_probs=62.9
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCCC--CCCchHHHHHHh--cCCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSFH--DPLLQVPLKALK--YGAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~~--E~fglv~lEAma--~G~p 457 (540)
..+++|+.+. +.....++...+..+ -.+... .-+.++....+ ...|++++-... +.-|+..++.+. ..+|
T Consensus 9 ~~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~~-~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ 84 (140)
T 3cg0_A 9 LPGVLIVEDG--RLAAATLRIQLESLG-YDVLGV-FDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLP 84 (140)
T ss_dssp CCEEEEECCB--HHHHHHHHHHHHHHT-CEEEEE-ESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEECC--HHHHHHHHHHHHHCC-CeeEEE-ECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCC
Confidence 4677777743 345555665555543 233311 22222222222 246888875443 345666666554 4777
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... ..-.+..... ...|..+|+..|.+.++|..+|..+++
T Consensus 85 ii~ls~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 85 IIFITS--SQDVETFQRA-KRVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp EEEEEC--CCCHHHHHHH-HTTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEec--CCCHHHHHHH-HhcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 777543 2222222111 124677899999999999999988764
No 127
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=61.80 E-value=15 Score=34.12 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=33.4
Q ss_pred chhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 38 DADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+.+-.++++++. +.||.++|+..- ..-|-..++..|+++|+++|+.|..+=|
T Consensus 11 ~~~~~~~~~~~~~----~~m~~i~Itgt~----t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 11 SSGLQGTENLYFQ----SHMTILVVTGTG----TGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp -----------CC----SSCEEEEEEESS----TTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cchhhHHHHHhcc----cCCCEEEEEeCC----CCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 4455567777774 558999998741 1236778899999999999999998866
No 128
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=61.62 E-value=46 Score=26.73 Aligned_cols=112 Identities=9% Similarity=-0.019 Sum_probs=65.4
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHh------------cCCEEEECCC-CCCCchHHH
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFS------------GSDIILCHSF-HDPLLQVPL 449 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~------------~aDi~v~PS~-~E~fglv~l 449 (540)
..+++|+.+. +.....++...+..+. ..|... -+.++....+. ..|++++=.. .+.-|+.++
T Consensus 6 ~~~iLivdd~--~~~~~~l~~~L~~~g~~~~v~~~--~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~ 81 (149)
T 1k66_A 6 TQPLLVVEDS--DEDFSTFQRLLQREGVVNPIYRC--ITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVL 81 (149)
T ss_dssp TSCEEEECCC--HHHHHHHHHHHHHTTBCSCEEEE--CSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHH
T ss_pred CccEEEEECC--HHHHHHHHHHHHHcCCCceEEEE--CCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHH
Confidence 4567777743 4456666666666542 144432 23333333443 4688887544 345677777
Q ss_pred HHHh-----cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 450 KALK-----YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 450 EAma-----~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+.+. ..+|+|+... ..-.+..... ...|..+|+..|.+.+.|.++|..++
T Consensus 82 ~~l~~~~~~~~~~ii~~t~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTT--SSNPKDIEIC-YSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp HHHTTSTTGGGSCEEEEES--CCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHhCcccCCCeEEEEeC--CCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 7775 3567776543 2222222111 11467789999999999999998875
No 129
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.61 E-value=45 Score=26.67 Aligned_cols=110 Identities=9% Similarity=-0.033 Sum_probs=58.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh---cCCceE
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK---YGAAPI 459 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma---~G~pvI 459 (540)
+++|+.+. +.....++.+.+..+ -.|.. ..+..+....+ ...|++++=-. -+.-|+.+++.+. ..+|+|
T Consensus 6 ~ILivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii 80 (137)
T 3cfy_A 6 RVLLVEDS--TSLAILYKQYVKDEP-YDIFH--VETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVI 80 (137)
T ss_dssp EEEEECSC--TTHHHHHHHHTTTSS-SEEEE--ESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEeCC--HHHHHHHHHHHHhcC-ceEEE--eCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 56677644 334455554443322 23332 22322222222 34688887543 2345666666654 356666
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+... ..-.+..... ...|..+|+..|.+.+.|..+|..++.
T Consensus 81 ~ls~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 81 IATA--HGSVDLAVNL-IQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp EEES--SCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEe--cCcHHHHHHH-HHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 6533 2222222110 114677899999999999999988753
No 130
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=60.26 E-value=12 Score=33.54 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCCcE--EEEEec-ChHHHHHHHhcCCEEEECCC-CC
Q 009217 368 VFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIV--IFVDSY-DDALLHLIFSGSDIILCHSF-HD 442 (540)
Q Consensus 368 KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v--~f~~~~-~~~~~~~~~~~aDi~v~PS~-~E 442 (540)
|=+..|.+|+..+.+ .+.+++++|+.. ..++.+++.|+..+..-| +|+++. ..... .-+..-|++++..- .|
T Consensus 51 kT~~~L~~A~~~i~~i~~~~iLfVgTk~--~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~-~~f~~PdlliV~Dp~~e 127 (208)
T 1vi6_A 51 KLDERIRVAAKFLSRYEPSKILLVAARQ--YAHKPVQMFSKVVGSDYIVGRFIPGTLTNPML-SEYREPEVVFVNDPAID 127 (208)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEEECSG--GGHHHHHHHHHHHCCEEEESSCCTTTTTCTTS-TTCCCCSEEEESCTTTT
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCH--HHHHHHHHHHHHhCCeeecCEECCCcccChhh-HhhCCCCEEEEECCCcc
Confidence 334556666655443 466788888643 345566666766542111 133332 22111 12345677776653 45
Q ss_pred CCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 443 PLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 443 ~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
- .++.||...|.|+|+- |+ ...++.|+
T Consensus 128 ~--~ai~EA~~l~IPvIalvDT--n~~p~~Vd 155 (208)
T 1vi6_A 128 K--QAVSEATAVGIPVVALCDS--NNSSADVD 155 (208)
T ss_dssp H--HHHHHHHHTTCCEEEEECT--TCCCTTCS
T ss_pred h--hHHHHHHHhCCCEEEEeCC--CCCccccC
Confidence 4 6789999999999984 44 44455554
No 131
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=60.22 E-value=11 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=29.5
Q ss_pred CceEEEEEecccccccccc-HHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG-~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.||||+|... |. .+| ....+....++|.+.||+|+++-..
T Consensus 1 ~mkiLiI~gs--pr--~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 1 GKKVLIVYAH--QE--PKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCEEEEEEeC--CC--CCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 4899999874 53 244 4556666778888889999999643
No 132
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=59.10 E-value=71 Score=25.91 Aligned_cols=113 Identities=14% Similarity=0.006 Sum_probs=61.1
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCC-cEEEEEecChHHHHHHHhc---CCEEEECCC-CCCCchHHHHHHh---cCC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDG-IVIFVDSYDDALLHLIFSG---SDIILCHSF-HDPLLQVPLKALK---YGA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~-~v~f~~~~~~~~~~~~~~~---aDi~v~PS~-~E~fglv~lEAma---~G~ 456 (540)
.+++|+.+. +.....++...+..... .|.. .-+.++....+.. .|++++=.. .+.-|+..++.+. ..+
T Consensus 4 ~~iLivdd~--~~~~~~l~~~L~~~~g~~~v~~--~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 79 (154)
T 2qsj_A 4 TVVLIVDDH--HLIRAGAKNLLEGAFSGMRVEG--AETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSN 79 (154)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHHHCTTEEEEE--ESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTS
T ss_pred cEEEEEcCC--HHHHHHHHHHHHhCCCceEEEE--ecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCC
Confidence 467777743 45566666666655212 3332 2233333344443 688887543 2334666666654 356
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+|+... ..-.+.+... ...|..+|+..|.+.++|.++|..++..
T Consensus 80 ~ii~ls~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 80 AVALISG--ETDHELIRAA-LEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EEEEC-------CHHHHHH-HHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEeC--CCCHHHHHHH-HHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 7776432 1212222111 1146778999999999999999988753
No 133
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=58.41 E-value=67 Score=25.42 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=61.6
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh-------cCCEEEECCC-CCCCchHHHHHHhc--
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS-------GSDIILCHSF-HDPLLQVPLKALKY-- 454 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~-------~aDi~v~PS~-~E~fglv~lEAma~-- 454 (540)
.+++|+.+. +.....++.+.+..+...|.. ..+.++....+. ..|++++=-. -+.-|+.+++.+..
T Consensus 3 ~~ILivdD~--~~~~~~l~~~L~~~g~~~v~~--~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~ 78 (133)
T 2r25_B 3 VKILVVEDN--HVNQEVIKRMLNLEGIENIEL--ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL 78 (133)
T ss_dssp SCEEEECSC--HHHHHHHHHHHHHTTCCCEEE--ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS
T ss_pred ceEEEEcCC--HHHHHHHHHHHHHcCCceEEE--ECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc
Confidence 456666643 445556666555443123432 223333223332 3588887533 24457777777652
Q ss_pred --CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 455 --GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 455 --G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
..|+|+... .+-.+..... ...|..+|+..|.+.++|.++|..++.
T Consensus 79 ~~~~~ii~lt~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 79 GYTSPIVALTA--FADDSNIKEC-LESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CCCSCEEEEES--CCSHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCCCCEEEEEC--CCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 456666432 2222222110 114677899999999999999988754
No 134
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=58.13 E-value=8.4 Score=34.27 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=24.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||||++. .+|++| ..+++.|.++||+|.++...
T Consensus 1 MkvlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (221)
T 3ew7_A 1 MKIGIIG-------ATGRAG---SRILEEAKNRGHEVTAIVRN 33 (221)
T ss_dssp CEEEEET-------TTSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CeEEEEc-------CCchhH---HHHHHHHHhCCCEEEEEEcC
Confidence 7877543 246676 57788899999999988753
No 135
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=57.67 E-value=68 Score=25.26 Aligned_cols=111 Identities=12% Similarity=-0.037 Sum_probs=60.8
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh---cCCce
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK---YGAAP 458 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma---~G~pv 458 (540)
.+++|+.+. +.....++.+.+..+ -.|.. ..+..+....+ ...|++++=-. -..-|+.+++.+. .++|+
T Consensus 4 ~~Ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (132)
T 3crn_A 4 KRILIVDDD--TAILDSTKQILEFEG-YEVEI--AATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKK 78 (132)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEE
T ss_pred cEEEEEeCC--HHHHHHHHHHHHHCC-ceEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcE
Confidence 456677643 445556666555543 23432 22322222232 24688887533 2345666666653 35667
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+... ..-.+..... ...|..+|+..|.+.++|.++|..++.
T Consensus 79 i~~s~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 79 IMVTG--YASLENSVFS-LNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp EEEES--CCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEec--cccHHHHHHH-HhccchhhccCCCCHHHHHHHHHHHHh
Confidence 66532 1212221110 114677899999999999999988754
No 136
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=57.31 E-value=15 Score=32.62 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=32.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..|||++|.. .| .|-...++..+++.+.+.|++|+++-.
T Consensus 5 ~mmkilii~~--S~---~g~T~~la~~i~~~l~~~g~~v~~~~l 43 (211)
T 1ydg_A 5 APVKLAIVFY--SS---TGTGYAMAQEAAEAGRAAGAEVRLLKV 43 (211)
T ss_dssp CCCEEEEEEC--CS---SSHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEEE--CC---CChHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3589999975 34 477888999999999999999998864
No 137
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=57.16 E-value=40 Score=26.99 Aligned_cols=114 Identities=10% Similarity=0.017 Sum_probs=65.6
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHH-hCCCcEEEEEecChHHHHHHHhc---CCEEEECCCC--CCCchHHHHHHhc---
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEE-LKDGIVIFVDSYDDALLHLIFSG---SDIILCHSFH--DPLLQVPLKALKY--- 454 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~-~~~~~v~f~~~~~~~~~~~~~~~---aDi~v~PS~~--E~fglv~lEAma~--- 454 (540)
..+++|+.+. +.....++.+.+. .+ -+|. ..-+.++....+.. .|++++=... +.-|+.+++.+..
T Consensus 4 ~~~ilivdd~--~~~~~~l~~~L~~~~~-~~v~--~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~ 78 (140)
T 3lua_A 4 DGTVLLIDYF--EYEREKTKIIFDNIGE-YDFI--EVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSR 78 (140)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHHCC-CEEE--EECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGG
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhccC-ccEE--EECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcc
Confidence 3567777743 4455666666665 32 2343 22233333333433 6888876543 3346666666554
Q ss_pred --CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 455 --GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 455 --G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
.+|+|+... ..-.+.+... ...|..+|+..|.+.+.|.++|..+++..
T Consensus 79 ~~~~~ii~ls~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 79 TANTPVIIATK--SDNPGYRHAA-LKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp GTTCCEEEEES--CCCHHHHHHH-HHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred cCCCCEEEEeC--CCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 677777543 2222222111 11467789999999999999999987654
No 138
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=56.91 E-value=21 Score=29.38 Aligned_cols=45 Identities=9% Similarity=-0.058 Sum_probs=32.2
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
+..+|+++|... .|+. ..-......++.+..+.||+|.|+...++
T Consensus 13 ~~~~kl~ii~~s-gP~~--~~~~~~al~lA~~A~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 13 EQXXXILIVVTH-GPED--LDRTYAPLFMASISASMEYETSVFFMIXG 57 (134)
T ss_dssp -CCCEEEEEECC-CGGG--THHHHHHHHHHHHHHHTTCEEEEEECTTG
T ss_pred cccceEEEEEcc-CCCC--HHHHHHHHHHHHHHHHCCCCEEEEEEeCc
Confidence 445789988875 5542 34556677788888999999999886543
No 139
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=56.71 E-value=14 Score=32.53 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=31.0
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||++|... .|-...++..+++.+.+.|++|+++-.
T Consensus 4 mmkilii~~S------~g~T~~la~~i~~~l~~~g~~v~~~~l 40 (199)
T 2zki_A 4 KPNILVLFYG------YGSIVELAKEIGKGAEEAGAEVKIRRV 40 (199)
T ss_dssp CCEEEEEECC------SSHHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEEEeC------ccHHHHHHHHHHHHHHhCCCEEEEEeh
Confidence 4899999763 477888889999999999999998864
No 140
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=56.66 E-value=9.1 Score=31.17 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=23.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||+++. .|.+| ..+++.|.+.|++|+++..
T Consensus 4 ~m~i~IiG--------~G~iG---~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAG--------IGRVG---YTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp -CEEEEEC--------CSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC--------CCHHH---HHHHHHHHhCCCeEEEEEC
Confidence 58888763 14444 5678889999999998864
No 141
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=56.62 E-value=9.2 Score=34.17 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=24.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||||++. .+|++| ..+++.|.++||+|.++..
T Consensus 1 MkilVtG-------atG~iG---~~l~~~L~~~g~~V~~~~R 32 (224)
T 3h2s_A 1 MKIAVLG-------ATGRAG---SAIVAEARRRGHEVLAVVR 32 (224)
T ss_dssp CEEEEET-------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEc-------CCCHHH---HHHHHHHHHCCCEEEEEEe
Confidence 7876542 246666 6778889999999999874
No 142
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=56.51 E-value=8.4 Score=35.70 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=28.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+.... |=.+.-+..|.++|.+.| +|.|++|...+
T Consensus 2 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~~ 39 (251)
T 2phj_A 2 PTFLLVNDD-------GYFSPGINALREALKSLG-RVVVVAPDRNL 39 (251)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CEEEEECCC-------CCCCHHHHHHHHHHHhcC-CEEEEecCCCc
Confidence 899977654 222345788999999988 99999997654
No 143
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=56.17 E-value=67 Score=24.72 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=58.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc-----CCc
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY-----GAA 457 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~-----G~p 457 (540)
+++|+.+. +.....++...+..+ -.+. ...+..+....+ ...|++++=.. .+.-|+..++.+.. .+|
T Consensus 3 ~ilivdd~--~~~~~~l~~~L~~~~-~~v~--~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 77 (124)
T 1mb3_A 3 KVLIVEDN--ELNMKLFHDLLEAQG-YETL--QTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIP 77 (124)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTT-CEEE--EESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSC
T ss_pred EEEEEcCC--HHHHHHHHHHHHHcC-cEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCc
Confidence 45666643 445555666555543 2333 223333222222 24688877543 34456777777653 566
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... ....+..... ...|..+|+..|.+.+.|.++|..++.
T Consensus 78 ii~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 78 VVAVTA--FAMKGDEERI-REGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEEEC--------CHHHH-HHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEEEEC--CCCHHHHHHH-HhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 766532 1222221110 014667899999999999999988764
No 144
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=56.00 E-value=17 Score=33.56 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=58.0
Q ss_pred cCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCC--cEEEEEec-ChHHHHHHHhcCCEEEECCC-
Q 009217 367 DVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDG--IVIFVDSY-DDALLHLIFSGSDIILCHSF- 440 (540)
Q Consensus 367 ~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~--~v~f~~~~-~~~~~~~~~~~aDi~v~PS~- 440 (540)
+|=+..|.+|+..+.. .+.+++++|+. +..++.+++.|+..+.. +-+|+++. .... ...+..=|++++-.-
T Consensus 85 ~kT~~~L~~A~~~i~~~~~~~~iLfVgTk--~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~-~~~f~~PdlliV~Dp~ 161 (253)
T 3bch_A 85 KRTWEKLLLAARAIVAIENPADVSVISSR--NTGQRAVLKFAAATGATPIAGRFTPGTFTNQI-QAAFREPRLLVVTDPR 161 (253)
T ss_dssp HHHHHHHHHHHHHHHTCSSGGGEEEEECS--HHHHHHHHHHHHHHCCEEEESCCCTTTTTCCS-CSTTCSCSEEEESCTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCC--HHHHHHHHHHHHHhCCeeecceecCCcccCcc-ccccCCCCEEEEECCC
Confidence 3335566666655542 46778899954 33456677777766421 11234432 1111 112455677777653
Q ss_pred CCCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 441 HDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 441 ~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
.|- .++.||...|.|+|+- |+ ...++.|+
T Consensus 162 ~e~--~AI~EA~~lgIPvIalvDT--n~dp~~VD 191 (253)
T 3bch_A 162 ADH--QPLTEASYVNLPTIALCNT--DSPLRYVD 191 (253)
T ss_dssp TTH--HHHHHHHHTTCCEEEEECT--TCCCTTCS
T ss_pred ccc--hHHHHHHHhCCCEEEEEcC--CCCcccCc
Confidence 444 6789999999999984 44 44555554
No 145
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=55.74 E-value=8.6 Score=35.53 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=28.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+.... |=.+.-+..|.++|.+.| +|.|++|...+
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (244)
T 2e6c_A 1 MRILVTNDD-------GIYSPGLWALAEAASQFG-EVFVAAPDTEQ 38 (244)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEECSSC
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 899976654 222344788999998888 99999997654
No 146
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=55.69 E-value=73 Score=25.03 Aligned_cols=112 Identities=12% Similarity=-0.007 Sum_probs=60.3
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh---cCCce
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK---YGAAP 458 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma---~G~pv 458 (540)
.+++|+.+. +.....++...+..+ -.|.. ..+..+....+ ...|++++=.. .+.-|+.+++.+. ..+|+
T Consensus 4 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (136)
T 1mvo_A 4 KKILVVDDE--ESIVTLLQYNLERSG-YDVIT--ASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPI 78 (136)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CEEEEEECC--HHHHHHHHHHHHHCC-cEEEE--ecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCE
Confidence 466677643 345555655555443 23432 22222222222 24688877433 2345666666654 35666
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+... .+-.+..... ...|..+|+..|.+.++|..+|..++..
T Consensus 79 i~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 79 LMLTA--KDEEFDKVLG-LELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp EEEEC--TTCCCCHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEEC--CCCHHHHHHH-HhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 66532 2222221110 0146778999999999999999887653
No 147
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=55.22 E-value=4.8 Score=38.75 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=34.5
Q ss_pred hHHHHHHhccCCCCCCCceEEEEEeccc-------cc--cccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 40 DLLAELRRFGSGSKKNGFHIIHICTEMD-------PL--VSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~mkIl~i~~e~~-------P~--~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+++..+..|.......+.||++||+.-. |+ ...-..|..=..+++++.++|++|++++..
T Consensus 20 ~i~~~i~~~~~~~~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 20 RWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHHHhhhhhhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence 3344454554322234567666776422 22 000111445578899999999999999853
No 148
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=55.15 E-value=17 Score=31.88 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=30.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||++|... | .|-...++..+++.+.+.|++|+++-.
T Consensus 6 ~kilii~~S--~---~g~T~~la~~i~~~l~~~g~~v~~~~l 42 (200)
T 2a5l_A 6 PYILVLYYS--R---HGATAEMARQIARGVEQGGFEARVRTV 42 (200)
T ss_dssp CEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEBC
T ss_pred ceEEEEEeC--C---CChHHHHHHHHHHHHhhCCCEEEEEEh
Confidence 699999764 4 477888999999999999999998854
No 149
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=55.12 E-value=17 Score=37.64 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=26.2
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.++||||+.. .+|.+| ..|++.|.++||+|+++...
T Consensus 145 ~k~m~VLVTG-------atG~IG---~~l~~~L~~~G~~V~~l~R~ 180 (516)
T 3oh8_A 145 GSPLTVAITG-------SRGLVG---RALTAQLQTGGHEVIQLVRK 180 (516)
T ss_dssp CCCCEEEEES-------TTSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEEC-------CCCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 3378988543 246665 66788899999999998754
No 150
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=54.78 E-value=1.1e+02 Score=27.09 Aligned_cols=111 Identities=10% Similarity=0.003 Sum_probs=61.9
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc--CCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY--GAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~--G~pvI 459 (540)
.+++|+.+. +.....++...+..+ -.|.... +.++....+ ...|++++=-. -+.-|+.+++.+.. .+|+|
T Consensus 6 ~~ILivdd~--~~~~~~l~~~L~~~g-~~v~~~~--~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii 80 (238)
T 2gwr_A 6 QRILVVDDD--ASLAEMLTIVLRGEG-FDTAVIG--DGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIV 80 (238)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEEEC--CGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEE
T ss_pred CeEEEEeCC--HHHHHHHHHHHHHCC-CEEEEEC--CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEE
Confidence 466777643 445556665555433 2343222 222222222 24688877543 34457777776643 67777
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+... ..-.+.+... ...|..||+..|.++++|..+|..++.
T Consensus 81 ~lt~--~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 81 MLTA--KTDTVDVVLG-LESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp EEEE--TTCCSCHHHH-HHTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred EEeC--CCCHHHHHHH-HHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 6543 2222221110 014677899999999999999988754
No 151
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=54.62 E-value=13 Score=34.21 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcE---EEEEecChHHHHHHHhcCCEEEECCC-C
Q 009217 368 VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIV---IFVDSYDDALLHLIFSGSDIILCHSF-H 441 (540)
Q Consensus 368 KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v---~f~~~~~~~~~~~~~~~aDi~v~PS~-~ 441 (540)
|=+..|.+|+.-+.. .+.+++++|+. +..++.+.+.|+..+..-| +|+++.=.......+..-|++++..- .
T Consensus 48 kT~~~L~~A~~~i~~i~~~~~iLfVgtk--~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~ 125 (241)
T 2xzm_B 48 ETWQKIKLAARVIAAVQHPEDVMVVCSR--IYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRS 125 (241)
T ss_dssp HHHHHHHHHHHHHHHCSSGGGEEEECCS--HHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEECC--HHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCCc
Confidence 335566666655543 35678899964 3345566677776653223 45655411111123455677777654 4
Q ss_pred CCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 442 DPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 442 E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
|- ..+.||...|.|+|+- |+ ...++.|+
T Consensus 126 e~--~ai~EA~~l~IPvIalvDT--n~~p~~VD 154 (241)
T 2xzm_B 126 DF--QAIKEASYVNIPVIALCDS--DSPLAYVD 154 (241)
T ss_dssp TH--HHHHHHTTTTCCEEECCCS--SSCCTTCC
T ss_pred ch--HHHHHHHHhCCCEEEEecC--CCCccccc
Confidence 44 6789999999999984 33 33444443
No 152
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=54.46 E-value=9.5 Score=35.32 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=28.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+-... |=.+.-+..|.++|.+.| +|.|++|...+
T Consensus 1 M~ILlTNDD-------Gi~apGi~aL~~~l~~~g-~V~VVAP~~~~ 38 (247)
T 1j9j_A 1 MRILVTNDD-------GIQSKGIIVLAELLSEEH-EVFVVAPDKER 38 (247)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 899976654 222344688899998887 99999997654
No 153
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=54.32 E-value=20 Score=28.32 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=30.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc-CC-eEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GH-LVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh-~V~vi~p~~ 100 (540)
||++++.+. .|+. .........++.++.++ || +|.|+.-..
T Consensus 2 ~k~~ii~~~-~p~~--~~~~~~al~~a~~~~~~~g~~~v~vff~~d 44 (117)
T 1jx7_A 2 QKIVIVANG-APYG--SESLFNSLRLAIALREQESNLDLRLFLMSD 44 (117)
T ss_dssp CEEEEEECC-CTTT--CSHHHHHHHHHHHHHHHCTTCEEEEEECGG
T ss_pred cEEEEEEcC-CCCC--cHHHHHHHHHHHHHHhcCCCccEEEEEEch
Confidence 488888764 5642 34456678899999999 99 999998553
No 154
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=54.06 E-value=73 Score=24.56 Aligned_cols=111 Identities=10% Similarity=-0.027 Sum_probs=59.7
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh---cCCce
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK---YGAAP 458 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma---~G~pv 458 (540)
.+++++.+. +.....++.+.+..+ -.|. ...+.++....+ ...|++++=-. .+.-|+..++.+. ..+|+
T Consensus 4 ~~ilivdd~--~~~~~~l~~~l~~~~-~~v~--~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (124)
T 1srr_A 4 EKILIVDDQ--SGIRILLNEVFNKEG-YQTF--QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRV 78 (124)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHTTT-CEEE--EESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHCC-cEEE--EeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCE
Confidence 356667643 445555655555432 2332 222322222222 34688877433 2334666666654 46677
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+... ..-.+..... ...|..+++..|.+.++|.+++..++.
T Consensus 79 i~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 79 IIMTA--YGELDMIQES-KELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEES--SCCHHHHHHH-HHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEc--cCchHHHHHH-HhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 76532 2222222110 014666799999999999999988764
No 155
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=54.05 E-value=1.1e+02 Score=26.69 Aligned_cols=111 Identities=8% Similarity=0.042 Sum_probs=62.2
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh---cCCce
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK---YGAAP 458 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma---~G~pv 458 (540)
.+++|+.+. +.....++...+..+ -.|.. ..+.++....+ ...|++++=-. -+.-|+.+++.+. ..+|+
T Consensus 3 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~i 77 (225)
T 1kgs_A 3 VRVLVVEDE--RDLADLITEALKKEM-FTVDV--CYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPV 77 (225)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCE
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHCC-CEEEE--ECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 456677643 445556666555532 33432 22333222232 24688877533 3445777777664 36777
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+... ..-.+.+... ...|..||+..|.++++|..+|..++.
T Consensus 78 i~ls~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 78 LMLTA--LSDVEYRVKG-LNMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp EEEES--SCHHHHHHHT-CCCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeC--CCCHHHHHHH-HhCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 77543 2222222211 125777899999999999999887653
No 156
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=54.04 E-value=81 Score=25.06 Aligned_cols=111 Identities=9% Similarity=-0.006 Sum_probs=61.5
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEE-EecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc---CC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFV-DSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY---GA 456 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~-~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~---G~ 456 (540)
..+++|+.+. +.....++...+..+ .+... ...+..+....+. ..|++++=.. .+.-|+.+++.+.. ..
T Consensus 9 ~~~iLivdd~--~~~~~~l~~~L~~~~--~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 84 (143)
T 2qv0_A 9 KMKVIIVEDE--FLAQQELSWLINTHS--QMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKP 84 (143)
T ss_dssp -CEEEEECSC--HHHHHHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCC
T ss_pred ceEEEEEcCC--HHHHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCc
Confidence 5677888743 445566666555542 22212 1223333223332 3688887643 34567777777754 33
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+|+.. +. .+.+... ...|..+|+..|.+.++|.++|..+++
T Consensus 85 ~ii~~s---~~-~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 85 FIVFIT---AW-KEHAVEA-FELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp EEEEEE---SC-CTTHHHH-HHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEEe---CC-HHHHHHH-HhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 344442 22 2222110 114667899999999999999988764
No 157
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=53.85 E-value=35 Score=27.38 Aligned_cols=114 Identities=9% Similarity=0.036 Sum_probs=59.2
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCCCCCCchHHHHHHh---cCCce
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSFHDPLLQVPLKALK---YGAAP 458 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~~E~fglv~lEAma---~G~pv 458 (540)
..+++|+.+. +.....++...+..+ -+|.. .-+.++....+. ..|++++=...+.-|+..++.+. ..+|+
T Consensus 4 ~~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pi 78 (142)
T 2qxy_A 4 TPTVMVVDES--RITFLAVKNALEKDG-FNVIW--AKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKV 78 (142)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHGGGT-CEEEE--ESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEE
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCE
Confidence 3466666643 344555555554433 23332 223333323333 35777765421223444455443 35777
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
|+... ..-.+..... ...|..+|+..|.+.++|.++|..++...
T Consensus 79 i~ls~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 79 AVLSA--YVDKDLIINS-VKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp EEEES--CCCHHHHHHH-HHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred EEEEC--CCCHHHHHHH-HHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 76533 2222222110 01466679999999999999999987644
No 158
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=53.67 E-value=13 Score=34.18 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=25.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 1 mk~vlVTG------as~gIG---~~~a~~l~~~G~~V~~~~r 33 (257)
T 1fjh_A 1 MSIIVISG------CATGIG---AATRKVLEAAGHQIVGIDI 33 (257)
T ss_dssp CCEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 67777774 357777 5678889999999888764
No 159
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=53.56 E-value=9.3 Score=36.31 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=24.1
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++|+||+.. .+|++| ..|++.|.++||+|.++...
T Consensus 6 ~~~~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~r~ 40 (321)
T 3vps_A 6 LKHRILITG-------GAGFIG---GHLARALVASGEEVTVLDDL 40 (321)
T ss_dssp -CCEEEEET-------TTSHHH---HHHHHHHHHTTCCEEEECCC
T ss_pred CCCeEEEEC-------CCChHH---HHHHHHHHHCCCEEEEEecC
Confidence 356776432 245555 67788899999999998743
No 160
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=53.33 E-value=1e+02 Score=27.74 Aligned_cols=112 Identities=10% Similarity=-0.049 Sum_probs=59.5
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc---CCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY---GAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~---G~p 457 (540)
..+++|+.+. +.....++.+.+..+ -.|. ...+.++....+ ...|++++=-. -+.-|+.+++.+.. .+|
T Consensus 23 ~~~ILivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 97 (250)
T 3r0j_A 23 EARVLVVDDE--ANIVELLSVSLKFQG-FEVY--TATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAP 97 (250)
T ss_dssp SCEEEEECSC--HHHHHHHHHHHHHTT-CEEE--EESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCC
T ss_pred CceEEEEECC--HHHHHHHHHHHHHCC-CEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 3566666643 334445555444432 2332 122322222222 23577766432 34456766766643 567
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... ..-.+.+... -..|..+|+..|.++++|..+|..++.
T Consensus 98 ii~lt~--~~~~~~~~~~-~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 98 ALFLTA--RDSLQDKIAG-LTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp EEEEEC--STTHHHHHHH-HTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEC--CCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 776543 2222222111 115777899999999999999988753
No 161
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=53.23 E-value=12 Score=33.96 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=25.6
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.++|+|++.. .+||+| ..+++.|.++||+|.++...
T Consensus 19 l~~~~ilVtG-------atG~iG---~~l~~~L~~~G~~V~~~~R~ 54 (236)
T 3e8x_A 19 FQGMRVLVVG-------ANGKVA---RYLLSELKNKGHEPVAMVRN 54 (236)
T ss_dssp --CCEEEEET-------TTSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred cCCCeEEEEC-------CCChHH---HHHHHHHHhCCCeEEEEECC
Confidence 4568887543 357777 56778899999999998753
No 162
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=53.14 E-value=74 Score=24.31 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=57.7
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh---cCCce
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK---YGAAP 458 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma---~G~pv 458 (540)
.+++++.+. +.....++...+..+ -.+. ....+.++....+ ...|++++=-. .+.-|+..++.+. ..+|+
T Consensus 3 ~~ilivdd~--~~~~~~l~~~l~~~g-~~vv-~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~i 78 (120)
T 1tmy_A 3 KRVLIVDDA--AFMRMMLKDIITKAG-YEVA-GEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKI 78 (120)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEE-EEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEcCc--HHHHHHHHHHHhhcC-cEEE-EEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeE
Confidence 356666643 345555655555433 2321 1122222222222 24688776433 2334666666653 45677
Q ss_pred EEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 459 IAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 459 I~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
|+... ..-.+..... ...|..+|+..|.++++|.+++..++
T Consensus 79 i~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 79 IVCSA--MGQQAMVIEA-IKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEEC--TTCHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEeC--CCCHHHHHHH-HHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 66533 2222222110 11467789999999999999887753
No 163
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=52.29 E-value=11 Score=35.52 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=28.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
||||+.... |=.+.-+..|.++|.+.| +|.|++|...+
T Consensus 1 M~ILlTNDD-------Gi~ApGi~aL~~aL~~~g-~V~VVAP~~~q 38 (280)
T 1l5x_A 1 MKILVTNDD-------GVHSPGLRLLYQFALSLG-DVDVVAPESPK 38 (280)
T ss_dssp CEEEEECSS-------CTTCHHHHHHHHHHGGGS-EEEEEEESSCT
T ss_pred CeEEEEcCC-------CCCcHhHHHHHHHHHhCC-CEEEEecCCCC
Confidence 899976654 222344688899999888 99999997654
No 164
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=52.28 E-value=92 Score=25.13 Aligned_cols=113 Identities=9% Similarity=-0.014 Sum_probs=63.0
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh---------cCCEEEECCC-CCCCchHHHHHHh
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS---------GSDIILCHSF-HDPLLQVPLKALK 453 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~---------~aDi~v~PS~-~E~fglv~lEAma 453 (540)
..+++|+.+. +.....++...+..+ ....+...-+..+....+. ..|++++=-. -+.-|+.+++.+.
T Consensus 8 ~~~ILivdd~--~~~~~~l~~~L~~~~-~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~ 84 (149)
T 1i3c_A 8 PKVILLVEDS--KADSRLVQEVLKTST-IDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIK 84 (149)
T ss_dssp CEEEEEECCC--HHHHHHHHHHHHSCC-SCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECC--HHHHHHHHHHHHhcC-CCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 4567777743 445556666555433 2112222223333334444 3688887543 2445777777765
Q ss_pred c-----CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 454 Y-----GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 454 ~-----G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
. .+|+|+... ..-.+.+... ...|..+|+..|.+.++|.++|..+.
T Consensus 85 ~~~~~~~~piiils~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 85 QNPDLKRIPVVVLTT--SHNEDDVIAS-YELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp HCTTTTTSCEEEEES--CCCHHHHHHH-HHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred hCcCcCCCeEEEEEC--CCChHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 3 456766533 2222222111 11467789999999999999988764
No 165
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=52.11 E-value=10 Score=34.42 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=25.3
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcC-CeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G-h~V~vi~p~ 99 (540)
.||.++|+. ..||+| ..+++.|.++| ++|.++...
T Consensus 22 ~mk~vlVtG------atG~iG---~~l~~~L~~~G~~~V~~~~R~ 57 (236)
T 3qvo_A 22 HMKNVLILG------AGGQIA---RHVINQLADKQTIKQTLFARQ 57 (236)
T ss_dssp CCEEEEEET------TTSHHH---HHHHHHHTTCTTEEEEEEESS
T ss_pred cccEEEEEe------CCcHHH---HHHHHHHHhCCCceEEEEEcC
Confidence 356666664 357777 56788999999 899888743
No 166
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=51.97 E-value=14 Score=31.12 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=26.0
Q ss_pred CCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 50 SGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 50 ~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++...++|+|+++. .|.+| ..+++.|.+.|++|+++...
T Consensus 13 ~~~~~~~~~v~IiG--------~G~iG---~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 13 MSKKQKSKYIVIFG--------CGRLG---SLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp ----CCCCEEEEEC--------CSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred hhcccCCCcEEEEC--------CCHHH---HHHHHHHHhCCCeEEEEECC
Confidence 45566678998763 24444 56778888999999988754
No 167
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=51.78 E-value=18 Score=32.19 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=24.3
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHH-HcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQ-RKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~-~~Gh~V~vi~p 98 (540)
.||.++|+. ..||+| ..+++.|. ++||+|.++..
T Consensus 4 mmk~vlVtG------asg~iG---~~~~~~l~~~~g~~V~~~~r 38 (221)
T 3r6d_A 4 MYXYITILG------AAGQIA---QXLTATLLTYTDMHITLYGR 38 (221)
T ss_dssp SCSEEEEES------TTSHHH---HHHHHHHHHHCCCEEEEEES
T ss_pred eEEEEEEEe------CCcHHH---HHHHHHHHhcCCceEEEEec
Confidence 367555553 357777 66778888 89999988864
No 168
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=51.76 E-value=94 Score=25.11 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=62.2
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEE-EecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFV-DSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGA 456 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~-~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~ 456 (540)
..+++|+.+. +.....++...+.. ..+... ...+.++....+. ..|++++=.. .+.-|+.+++.+. ..+
T Consensus 5 ~~~ILivdd~--~~~~~~l~~~L~~~--~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 5 TARIMLVDDH--PIVREGYRRLIERR--PGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAA 80 (153)
T ss_dssp CEEEEEECSC--HHHHHHHHHHHTTS--TTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTC
T ss_pred ccEEEEECCc--HHHHHHHHHHHhhC--CCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 4567777743 34455555554431 123323 2223333333333 3588887543 3445666666654 367
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+|+... ..-.+..... ...|..+|+..|.+.++|.++|..++.
T Consensus 81 ~ii~ls~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 81 RILIFTM--HQGSAFALKA-FEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp CEEEEES--CCSHHHHHHH-HHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred eEEEEEC--CCCHHHHHHH-HHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 7777543 2222222110 114677899999999999999998865
No 169
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=51.66 E-value=1.2e+02 Score=26.50 Aligned_cols=112 Identities=9% Similarity=-0.080 Sum_probs=63.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~p 457 (540)
..+++|+.+. +.....+....+..+ -.|. ...+.++....+. ..|++++=-. .+.-|+.+++.+. ..+|
T Consensus 7 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ 81 (233)
T 1ys7_A 7 SPRVLVVDDD--SDVLASLERGLRLSG-FEVA--TAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 (233)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHTT-CEEE--EESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCC
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 4567777743 445556666555543 2343 2223333223332 4688877433 3445777777664 4677
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... ..-.+..... ...|..+|+..|.++++|..+|..++.
T Consensus 82 ii~lt~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 82 VCVLSA--RSSVDDRVAG-LEAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp EEEEEC--CCTTTCCCTT-TTTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEc--CCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 777543 2222222211 125777899999999999999887753
No 170
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=51.61 E-value=14 Score=33.64 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=23.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 1 Mk~vlVtG------asg~iG---~~l~~~L~~~g~~V~~~~r 33 (255)
T 2dkn_A 1 MSVIAITG------SASGIG---AALKELLARAGHTVIGIDR 33 (255)
T ss_dssp -CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEeC------CCcHHH---HHHHHHHHhCCCEEEEEeC
Confidence 55555654 357776 5678889999999988764
No 171
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=51.56 E-value=26 Score=27.95 Aligned_cols=113 Identities=8% Similarity=0.011 Sum_probs=59.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh-cCCEEEECCC-CCCCchHHHHHHh--c-----
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS-GSDIILCHSF-HDPLLQVPLKALK--Y----- 454 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~-~aDi~v~PS~-~E~fglv~lEAma--~----- 454 (540)
+.+++++.+. +.....++.+.+..+ -.|. ..-+.++....+. ..|++++=-. -+.-|+..++.+. .
T Consensus 7 ~~~ILivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 7 GLKVLVMDEN--GVSRMVTKGLLVHLG-CEVT--TVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp TCEEEEECSC--HHHHHHHHHHHHHTT-CEEE--EESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCS
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHHcC-CeEE--EeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccC
Confidence 4577777743 445555666555543 2343 2223333223332 2388877433 2334566666664 1
Q ss_pred CCc-eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 455 GAA-PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 455 G~p-vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
..| +|+... ..-.+..... ...|..+|+..|.+.++|.++|..++..
T Consensus 82 ~~~~ii~~s~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 82 QRPLLVALSG--NTDKSTKEKC-MSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCCEEEEEES--CCSHHHHHHH-HHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CCceEEEEeC--CCCHHHHHHH-HHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 234 343322 1212222110 1146778999999999999999887654
No 172
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=51.48 E-value=87 Score=24.63 Aligned_cols=113 Identities=8% Similarity=0.056 Sum_probs=61.5
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChHHHHHHH--hcCCEEEECCCC-CCCchHHHHHHh---cCCc
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALLHLIF--SGSDIILCHSFH-DPLLQVPLKALK---YGAA 457 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~~~~~~~--~~aDi~v~PS~~-E~fglv~lEAma---~G~p 457 (540)
.+++|+.+. +.....++.+.+..+ .+...... +..+....+ ...|++++=-.. ..-|+.+++.+. ..+|
T Consensus 4 ~~Ilivdd~--~~~~~~l~~~l~~~~--~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ 79 (133)
T 3b2n_A 4 TSLIIAEDQ--NMLRQAMVQLIKLHG--DFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIK 79 (133)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCE
T ss_pred eEEEEECCC--HHHHHHHHHHHhhCC--CcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCc
Confidence 356666633 445566666655543 22222222 323222332 246888875432 345676777665 3566
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+|+... ..-.+.+... ...|..+|+..|.++++|.++|..++..
T Consensus 80 ii~ls~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 80 VIIVTT--FKRPGYFEKA-VVNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp EEEEES--CCCHHHHHHH-HHTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred EEEEec--CCCHHHHHHH-HHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 666532 1222222111 1146778999999999999999887653
No 173
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=51.36 E-value=46 Score=25.99 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=60.7
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHhc-----CC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALKY-----GA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma~-----G~ 456 (540)
.+++++.+. +.....++...+..+...|.. .-+.++....+. ..|++++=.. -+.-|+..++.+.. .+
T Consensus 7 ~~ilivdd~--~~~~~~l~~~L~~~g~~~v~~--~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 7 IKVLIVDDQ--VTSRLLLGDALQQLGFKQITA--AGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp CCEEEECSS--HHHHHHHHHHHHTTTCSCEEC--CSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred CeEEEEcCC--HHHHHHHHHHHHHCCCcEEEe--cCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 466777743 445555666555433123332 223333323333 3588877543 34457777777753 45
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
|+|+... .+-.+..... ...|..+|+..|.+.++|.++|..++
T Consensus 83 ~ii~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 125 (129)
T 1p6q_A 83 AFIILTA--QGDRALVQKA-AALGANNVLAKPFTIEKMKAAIEAVF 125 (129)
T ss_dssp EEEECCS--CCCHHHHHHH-HHHTCSCEECCCSSHHHHHHHHHHHH
T ss_pred CEEEEeC--CCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 5665432 2222222110 01466679999999999999988764
No 174
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=51.20 E-value=7.8 Score=37.02 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=24.4
Q ss_pred CCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHc-----C-CeEEEEee
Q 009217 51 GSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-----G-HLVEVILP 98 (540)
Q Consensus 51 ~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-----G-h~V~vi~p 98 (540)
.++.++|||.+|.. |.+| ..++..|.+. | |+|+++..
T Consensus 3 ~m~~~~m~I~iiG~--------G~mG---~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 3 AMNQQPIKIAVFGL--------GGVG---GYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp ----CCEEEEEECC--------SHHH---HHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCCCCEEEEECc--------CHHH---HHHHHHHHhCccccCCCCCEEEEEc
Confidence 45566799998853 5565 4556777777 9 99998864
No 175
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=51.18 E-value=14 Score=34.25 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=27.3
Q ss_pred ceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+.|++. .||+| +.+.+|+.+|+++|+.|.++=.
T Consensus 18 ~~vI~v~s~------kGGvGKTT~a~nLA~~la~~G~~VlliD~ 55 (262)
T 2ph1_A 18 KSRIAVMSG------KGGVGKSTVTALLAVHYARQGKKVGILDA 55 (262)
T ss_dssp SCEEEEECS------SSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 567777652 35555 6778899999999999988853
No 176
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=51.04 E-value=5.1 Score=41.07 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCcEEEEEec-ChHHHH-HHHhcCCEEEECCC-CCCCchHHHHHHhcCCceEEEec
Q 009217 399 SRALVSFQEELKDGIVIFVDSY-DDALLH-LIFSGSDIILCHSF-HDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 399 ~~~l~~l~~~~~~~~v~f~~~~-~~~~~~-~~~~~aDi~v~PS~-~E~fglv~lEAma~G~pvI~~~~ 463 (540)
.+..+.++++++ +-+.+.|.- +.+.+. +=...+|+|+.-.- -|.-=++.+-|-.+|.+-+.+.+
T Consensus 267 ~~r~~~la~~l~-~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~v 333 (461)
T 4g65_A 267 LQRAEKLSEELE-NTIVFCGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLI 333 (461)
T ss_dssp HHHHHHHHHHCT-TSEEEESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHCC-CceEEeccccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccc
Confidence 456777788875 333344443 444332 23577999998765 46667778889999998888876
No 177
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=50.85 E-value=12 Score=34.73 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=28.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
.||||+.... |=.+.-+..|.++|.+.| +|.|++|...+
T Consensus 1 ~M~ILlTNDD-------Gi~apGi~aL~~~L~~~g-~V~VVAP~~~~ 39 (254)
T 2v4n_A 1 SMRILLSNDD-------GVHAPGIQTLAKALREFA-DVQVVAPDRNR 39 (254)
T ss_dssp CCEEEEECSS-------CTTCHHHHHHHHHHTTTS-EEEEEEESSCC
T ss_pred CCeEEEEcCC-------CCCCHHHHHHHHHHHhCC-cEEEEeeCCCC
Confidence 3899976654 222344688889998875 99999997654
No 178
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=50.80 E-value=12 Score=33.74 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=24.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 1 Mk~vlVTG------as~gIG---~~~a~~l~~~G~~V~~~~r 33 (230)
T 3guy_A 1 MSLIVITG------ASSGLG---AELAKLYDAEGKATYLTGR 33 (230)
T ss_dssp --CEEEES------TTSHHH---HHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEec------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 67777775 357777 6788899999999888764
No 179
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=50.78 E-value=80 Score=24.01 Aligned_cols=110 Identities=9% Similarity=0.066 Sum_probs=58.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh--cCCceEE
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK--YGAAPIA 460 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma--~G~pvI~ 460 (540)
+++++.+. +.....++...+..+ -.|.. ..+..+....+ ...|++++=-. .+.-|+..++.+. ...|+|+
T Consensus 3 ~ilivdd~--~~~~~~l~~~l~~~~-~~v~~--~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~ 77 (120)
T 2a9o_A 3 KILIVDDE--KPISDIIKFNMTKEG-YEVVT--AFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILM 77 (120)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEE
T ss_pred eEEEEcCC--HHHHHHHHHHHHhcC-cEEEE--ecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEE
Confidence 45666643 344555555555433 23432 22332222222 34688877543 2345666666553 4677776
Q ss_pred EecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 461 VTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 461 ~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
... ..-.+..... ...|..+|+..|.+.+.|.+++..++.
T Consensus 78 ~s~--~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 78 LSA--KDSEFDKVIG-LELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp EES--CCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred Eec--CCchHHHHHH-HhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 543 2222221110 014667899999999999999887654
No 180
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=50.59 E-value=8.9 Score=35.66 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=28.3
Q ss_pred CCCCCceEEEEEeccccccccccH--HHHHhHHHHHHHHcCCeEEEEeec
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSL--ASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~--~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+..++|||+.|++. .||+ .+.+.+|+.+|+ +|..|.+|=..
T Consensus 22 ~~~~~~~vI~v~s~------kGGvGKTT~a~~LA~~la-~g~~VlliD~D 64 (267)
T 3k9g_A 22 MDNKKPKIITIASI------KGGVGKSTSAIILATLLS-KNNKVLLIDMD 64 (267)
T ss_dssp ----CCEEEEECCS------SSSSCHHHHHHHHHHHHT-TTSCEEEEEEC
T ss_pred CCCCCCeEEEEEeC------CCCchHHHHHHHHHHHHH-CCCCEEEEECC
Confidence 44566888888762 3555 467788999999 99999998543
No 181
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=50.41 E-value=81 Score=28.66 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=26.4
Q ss_pred CCEEEECCC-CCCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 432 SDIILCHSF-HDPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
-|++++-.- .|. .++.||...|.|+|+- |+ ..-++.|+
T Consensus 158 Pdll~v~Dp~~e~--~ai~EA~~l~IPvIaivDT--n~dp~~Vd 197 (231)
T 3bbn_B 158 PDIVIIVDQQEEY--TALRECITLGIPTICLIDT--NCNPDLAD 197 (231)
T ss_dssp CSEEEESCTTTTH--HHHHHHHTTTCCEEECCCS--SSCCSSCS
T ss_pred CCEEEEeCCcccc--HHHHHHHHhCCCEEEEecC--CCCcccee
Confidence 577777654 454 7889999999999984 44 34455554
No 182
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=50.35 E-value=12 Score=33.52 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=20.3
Q ss_pred HHHHhHHHHHHHHcCCeEEEEee
Q 009217 76 ASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.+-..+++.|.++||+|+++..
T Consensus 9 G~~G~~la~~L~~~g~~v~vid~ 31 (218)
T 3l4b_C 9 ETTAYYLARSMLSRKYGVVIINK 31 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHHhCCCeEEEEEC
Confidence 67778899999999999999974
No 183
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=50.16 E-value=38 Score=26.42 Aligned_cols=111 Identities=11% Similarity=-0.032 Sum_probs=60.2
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh-----cCC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK-----YGA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma-----~G~ 456 (540)
.+++++.+. +.....++...+..+ -.+.. .-+.++....+. ..|++++=.. -+.-|+..++.+. ..+
T Consensus 3 ~~ilivdd~--~~~~~~l~~~l~~~g-~~v~~--~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 77 (127)
T 2jba_A 3 RRILVVEDE--APIREMVCFVLEQNG-FQPVE--AEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDI 77 (127)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTS
T ss_pred cEEEEEcCC--HHHHHHHHHHHHHCC-ceEEE--eCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCC
Confidence 356667643 445555665555443 23332 223232222222 3577776433 2335677777765 356
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+|+... ..-.+..... ...|..+|+..|.++++|.++|..+++
T Consensus 78 ~ii~~s~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 78 PVVMLTA--RGEEEDRVRG-LETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CEEEEEE--TTHHHHHHTT-CCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEeC--CCCHHHHHHH-HhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 7766533 2222222211 125777899999999999999887653
No 184
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=49.60 E-value=17 Score=31.78 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=24.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+|+++. .+|++| ..+++.|.++||+|.++...
T Consensus 4 ~~ilVtG-------atG~iG---~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIFG-------ATGQTG---LTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CEEEEES-------TTSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEEc-------CCcHHH---HHHHHHHHHCCCeEEEEEeC
Confidence 7777542 246666 67788899999999988753
No 185
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=49.58 E-value=39 Score=28.93 Aligned_cols=112 Identities=12% Similarity=-0.028 Sum_probs=62.6
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhc--CCEEEECCC-CCCCchHHHHHHh---cCCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSG--SDIILCHSF-HDPLLQVPLKALK---YGAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~--aDi~v~PS~-~E~fglv~lEAma---~G~p 457 (540)
..+++|+.+. +.....++.+.+..+ -.|. ..-+.++....+.. .|++++=-. -+.-|+-+++.+. ..+|
T Consensus 7 ~~~iLivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ 81 (184)
T 3rqi_A 7 DKNFLVIDDN--EVFAGTLARGLERRG-YAVR--QAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDAR 81 (184)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHTT-CEEE--EECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCE
T ss_pred CCeEEEEcCC--HHHHHHHHHHHHHCC-CEEE--EeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCC
Confidence 4567777743 445556666655543 2332 22233333334432 577776432 3445677776654 3667
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... ..-.+.+... ...|..+|+..|.+++.|..+|..++.
T Consensus 82 ii~lt~--~~~~~~~~~a-~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 82 ILVLTG--YASIATAVQA-VKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp EEEEES--SCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred EEEEeC--CCCHHHHHHH-HHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 776533 2222222111 114677899999999999998887654
No 186
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=49.58 E-value=13 Score=35.63 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=24.4
Q ss_pred CCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 51 GSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 51 ~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..+.+.||||+.. .+|++| ..|++.|.++||+|.++...
T Consensus 9 ~~~~~~~~vlVTG-------atG~iG---~~l~~~L~~~g~~V~~~~r~ 47 (335)
T 1rpn_A 9 HHGSMTRSALVTG-------ITGQDG---AYLAKLLLEKGYRVHGLVAR 47 (335)
T ss_dssp ------CEEEEET-------TTSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred cccccCCeEEEEC-------CCChHH---HHHHHHHHHCCCeEEEEeCC
Confidence 4556778988542 246666 66788899999999988753
No 187
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=49.53 E-value=1.1e+02 Score=27.72 Aligned_cols=57 Identities=11% Similarity=-0.051 Sum_probs=34.7
Q ss_pred CchHHHHHHh---cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 444 LLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 444 fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
-|+.+++.+. ..+|+|+... ....+..... ...|..+|+..|.+.++|.++|..++.
T Consensus 187 ~G~~l~~~ir~~~~~~piI~lt~--~~~~~~~~~~-~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 187 DGYRLTQRIRQLGLTLPVIGVTA--NALAEEKQRC-LESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CCHHHHHHHHHHHCCSCEEEEES--STTSHHHHHH-HHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCcEEEEEC--CCCHHHHHHH-HHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 3455554443 4677777543 2222222110 114777899999999999999988753
No 188
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=49.50 E-value=6.7 Score=38.07 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=25.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.++|+||+.. .+|++| ..|++.|.++||+|.++...
T Consensus 23 ~~~~~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~r~ 58 (351)
T 3ruf_A 23 FSPKTWLITG-------VAGFIG---SNLLEKLLKLNQVVIGLDNF 58 (351)
T ss_dssp HSCCEEEEET-------TTSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCCCeEEEEC-------CCcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 3457887542 245555 67888899999999998754
No 189
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=49.23 E-value=13 Score=33.49 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=27.3
Q ss_pred CCCCceEEEEEeccccccccccH-HHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~-~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
..+++||++..+ ||. ...+..|.+.|.+.| +|+|+....
T Consensus 16 ~l~~k~IllgvT--------Gsiaa~k~~~ll~~L~~~g-~V~vv~T~~ 55 (209)
T 1mvl_A 16 TPRKPRVLLAAS--------GSVAAIKFGNLCHCFTEWA-EVRAVVTKS 55 (209)
T ss_dssp ---CCEEEEEEC--------SSGGGGGHHHHHHHHHTTS-EEEEEECTG
T ss_pred ccCCCEEEEEEe--------CcHHHHHHHHHHHHHhcCC-CEEEEEcch
Confidence 344578988765 443 344788999999999 999998643
No 190
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=49.19 E-value=16 Score=30.10 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=25.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
....||+++. .|.+-..+++.|.+.|++|+++-..
T Consensus 5 ~~~~~viIiG-----------~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 5 DICNHALLVG-----------YGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCSCEEEEC-----------CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCCCCEEEEC-----------cCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3345777663 2455578889999999999999754
No 191
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=49.07 E-value=31 Score=29.18 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=31.4
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..||+++... ..|..+.++..+++.|.+.|++|.++-..
T Consensus 4 ~~kv~IvY~S-----~~GnT~~iA~~ia~~l~~~g~~v~~~~~~ 42 (159)
T 3fni_A 4 ETSIGVFYVS-----EYGYSDRLAQAIINGITKTGVGVDVVDLG 42 (159)
T ss_dssp CCEEEEEECT-----TSTTHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEEEC-----CChHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 3478877542 35999999999999999999999887543
No 192
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=49.03 E-value=11 Score=33.65 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=24.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||+++. .+|++| ..+++.|.++||+|.++...
T Consensus 1 M~ilItG-------atG~iG---~~l~~~L~~~g~~V~~~~R~ 33 (219)
T 3dqp_A 1 MKIFIVG-------STGRVG---KSLLKSLSTTDYQIYAGARK 33 (219)
T ss_dssp CEEEEES-------TTSHHH---HHHHHHHTTSSCEEEEEESS
T ss_pred CeEEEEC-------CCCHHH---HHHHHHHHHCCCEEEEEECC
Confidence 7877543 246666 67788999999999998754
No 193
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=48.58 E-value=24 Score=31.71 Aligned_cols=37 Identities=24% Similarity=0.160 Sum_probs=27.9
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
++||++-.+. +....+...|.+.|.+.|++|+|+...
T Consensus 4 ~k~IllgvTG-------aiaa~k~~~ll~~L~~~g~eV~vv~T~ 40 (209)
T 3zqu_A 4 PERITLAMTG-------ASGAQYGLRLLDCLVQEEREVHFLISK 40 (209)
T ss_dssp CSEEEEEECS-------SSCHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCEEEEEEEC-------HHHHHHHHHHHHHHHHCCCEEEEEECc
Confidence 3688876541 224566889999999999999999754
No 194
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=48.34 E-value=19 Score=28.05 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcC-CeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G-h~V~vi~p 98 (540)
+.|+|+++. . |++| ..+++.|.+.| ++|.++..
T Consensus 4 ~~~~v~I~G-------~-G~iG---~~~~~~l~~~g~~~v~~~~r 37 (118)
T 3ic5_A 4 MRWNICVVG-------A-GKIG---QMIAALLKTSSNYSVTVADH 37 (118)
T ss_dssp TCEEEEEEC-------C-SHHH---HHHHHHHHHCSSEEEEEEES
T ss_pred CcCeEEEEC-------C-CHHH---HHHHHHHHhCCCceEEEEeC
Confidence 346777552 1 5555 56788899999 99887764
No 195
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=48.07 E-value=15 Score=35.16 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=24.9
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+.||||+.. .+|++| ..|++.|.++||+|.++...
T Consensus 12 ~~M~ilVtG-------atG~iG---~~l~~~L~~~g~~V~~~~r~ 46 (342)
T 2x4g_A 12 AHVKYAVLG-------ATGLLG---HHAARAIRAAGHDLVLIHRP 46 (342)
T ss_dssp CCCEEEEES-------TTSHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred cCCEEEEEC-------CCcHHH---HHHHHHHHHCCCEEEEEecC
Confidence 347887542 246665 66788899999999988754
No 196
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=47.65 E-value=23 Score=30.92 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=31.3
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p 98 (540)
.|||++|... + .|-...++..+++.+.+ .|++|+++-.
T Consensus 4 M~kiliiy~S--~---~GnT~~~a~~i~~~l~~~~g~~v~~~~l 42 (188)
T 2ark_A 4 MGKVLVIYDT--R---TGNTKKMAELVAEGARSLEGTEVRLKHV 42 (188)
T ss_dssp CEEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred CCEEEEEEEC--C---CcHHHHHHHHHHHHHhhcCCCeEEEEEh
Confidence 3799998753 3 58888999999999998 9999998864
No 197
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=47.58 E-value=13 Score=30.64 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHcCCeEEEEee
Q 009217 76 ASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.+-..+++.|.++|++|.++-.
T Consensus 15 G~iG~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 15 EAAGVGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHHHCCCeEEEEEC
Confidence 34557788999999999998864
No 198
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=47.50 E-value=92 Score=23.80 Aligned_cols=110 Identities=17% Similarity=0.088 Sum_probs=59.7
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh--cCCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK--YGAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma--~G~pvI 459 (540)
.+++++.+. +.....++...+..+ -.+.. ..+..+....+. ..|++++=.. .+.-|+..++.+. ...|+|
T Consensus 3 ~~ilivdd~--~~~~~~l~~~L~~~~-~~v~~--~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii 77 (122)
T 1zgz_A 3 HHIVIVEDE--PVTQARLQSYFTQEG-YTVSV--TASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGII 77 (122)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEE
T ss_pred cEEEEEECC--HHHHHHHHHHHHHCC-CeEEE--ecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEE
Confidence 356666643 345555665555443 34432 223333323332 3688877443 2345677777764 356666
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+... ..-.+..... ...|..+|+..|.+.++|..+|..++
T Consensus 78 ~~s~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 78 LVTG--RSDRIDRIVG-LEMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp EEES--SCCHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEC--CCChhhHHHH-HHhCHHHHccCCCCHHHHHHHHHHHH
Confidence 6432 2222221110 11466789999999999999888764
No 199
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=47.46 E-value=12 Score=36.02 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=23.1
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+.++|+||+.. .+|++| ..|++.|.++||+|.++...
T Consensus 15 ~~~~~~~vlVtG-------atG~iG---~~l~~~L~~~G~~V~~~~r~ 52 (347)
T 4id9_A 15 VPRGSHMILVTG-------SAGRVG---RAVVAALRTQGRTVRGFDLR 52 (347)
T ss_dssp ------CEEEET-------TTSHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred cccCCCEEEEEC-------CCChHH---HHHHHHHHhCCCEEEEEeCC
Confidence 345567777542 246666 66788899999999988643
No 200
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=47.21 E-value=94 Score=23.80 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=58.6
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh--cCCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK--YGAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma--~G~pvI 459 (540)
.+++++.+. +.....++...+..+ -.|.. .-+..+....+. ..|++++=.. .+.-|+..++.+. ..+|+|
T Consensus 4 ~~ilivdd~--~~~~~~l~~~l~~~~-~~v~~--~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii 78 (123)
T 1xhf_A 4 PHILIVEDE--LVTRNTLKSIFEAEG-YDVFE--ATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALM 78 (123)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHTTT-CEEEE--ESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEE
T ss_pred ceEEEEeCC--HHHHHHHHHHHhhCC-cEEEE--eCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEE
Confidence 456667643 344555555555432 23332 223232223332 4688877543 2335666666654 466666
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+... ..-.+..... ...|..+|+..|.++++|..++..++
T Consensus 79 ~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 79 FLTG--RDNEVDKILG-LEIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp EEES--CCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEEC--CCChHHHHHH-HhcCcceEEeCCCCHHHHHHHHHHHH
Confidence 6532 2222221110 01466789999999999999888764
No 201
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=47.19 E-value=1.7e+02 Score=28.74 Aligned_cols=100 Identities=12% Similarity=0.060 Sum_probs=65.9
Q ss_pred EEEecccccCCHHHHHHHHHHHHhcCcEEEEEecC-----------CChhHHHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 009217 359 GCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTN-----------KLPSASRALVSFQEELKDGIVIFVDSYDDALLHL 427 (540)
Q Consensus 359 ~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g-----------~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~ 427 (540)
+.+|-..-+ ..+..++.+..+.+.++.++..|.- ...+.-..|.+.+++.+ --.+...++......
T Consensus 145 ~Iigpcsve-s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~G--l~~~te~~d~~~~~~ 221 (385)
T 3nvt_A 145 FVFGPCSVE-SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYG--LGVISEIVTPADIEV 221 (385)
T ss_dssp EEEECSBCC-CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHT--CEEEEECCSGGGHHH
T ss_pred EEEEeCCcC-CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcC--CEEEEecCCHHHHHH
Confidence 344554444 6778888888887778888877641 11123346667777765 233455677777666
Q ss_pred HHhcCCEEEECCC-CCCCchHHHHHHhcCCceEEEe
Q 009217 428 IFSGSDIILCHSF-HDPLLQVPLKALKYGAAPIAVT 462 (540)
Q Consensus 428 ~~~~aDi~v~PS~-~E~fglv~lEAma~G~pvI~~~ 462 (540)
+...+|++=+||. .+.+++. -++-..|+||+.++
T Consensus 222 l~~~vd~lkIgs~~~~n~~LL-~~~a~~gkPVilk~ 256 (385)
T 3nvt_A 222 ALDYVDVIQIGARNMQNFELL-KAAGRVDKPILLKR 256 (385)
T ss_dssp HTTTCSEEEECGGGTTCHHHH-HHHHTSSSCEEEEC
T ss_pred HHhhCCEEEECcccccCHHHH-HHHHccCCcEEEec
Confidence 6666999999997 5676543 34567899999885
No 202
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=47.16 E-value=17 Score=32.13 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=31.2
Q ss_pred HHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 44 ELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 44 ~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+++.+.. ...|+|+++-.. .+|..+.++..|++.|.+.|++|.++...
T Consensus 11 ~~~~~~~~--~~~~kv~IvY~S-----~tGnTe~~A~~ia~~l~~~g~~v~v~~l~ 59 (191)
T 1bvy_F 11 KVRKKAEN--AHNTPLLVLYGS-----NMGTAEGTARDLADIAMSKGFAPQVATLD 59 (191)
T ss_dssp ------------CCCEEEEEEC-----SSSHHHHHHHHHHHHHHTTTCCCEEEEGG
T ss_pred HHhhcccc--cCCCeEEEEEEC-----CChHHHHHHHHHHHHHHhCCCceEEeeHH
Confidence 35555532 345677766442 46999999999999999999999987543
No 203
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=47.04 E-value=30 Score=31.27 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=28.1
Q ss_pred CceEEEEEecccccc--ccccHH-HHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLV--SIGSLA-SYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~--~~GG~~-~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.||||+|... |.. +.|+.. ..+..+.+.+.+.||+|+++-..
T Consensus 25 M~kiLiI~gs--p~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 25 MSNVLIINAM--KEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp CCCEEEEECC--CCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CcceEEEEeC--CCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4799999874 531 124454 44455666777899999998764
No 204
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=46.87 E-value=94 Score=23.67 Aligned_cols=109 Identities=10% Similarity=-0.021 Sum_probs=58.7
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCCceE
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGAAPI 459 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~pvI 459 (540)
+++++.+. +.....++...+..+ -.|.. .-+.++....+. ..|++++=-. .+.-|+..++.+. ..+|+|
T Consensus 2 ~ilivdd~--~~~~~~l~~~l~~~g-~~v~~--~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 76 (121)
T 2pl1_A 2 RVLVVEDN--ALLRHHLKVQIQDAG-HQVDD--AEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPIL 76 (121)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEE
T ss_pred eEEEEeCc--HHHHHHHHHHHhhcC-CEEEE--eCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 45566633 344555655555443 23432 223333223332 3688877432 3445677777765 356666
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+... ..-.+..... ...|..+|+..|.++++|..++..++
T Consensus 77 ~~s~--~~~~~~~~~~-~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 77 VLTA--RESWQDKVEV-LSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp EEES--CCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEec--CCCHHHHHHH-HHcCccceEECCCCHHHHHHHHHHHH
Confidence 6532 2222221110 11467789999999999999988764
No 205
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=46.63 E-value=1e+02 Score=23.96 Aligned_cols=111 Identities=9% Similarity=0.028 Sum_probs=62.6
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh---cCCEEEECCC-CC-CCchHHHHHHh---cC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS---GSDIILCHSF-HD-PLLQVPLKALK---YG 455 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~---~aDi~v~PS~-~E-~fglv~lEAma---~G 455 (540)
..+++|+.+. +.....++...+..+ -+|. ...+.++....+. ..|++++=.. .+ .-|+.+++.+. ..
T Consensus 5 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~ 79 (132)
T 2rdm_A 5 AVTILLADDE--AILLLDFESTLTDAG-FLVT--AVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPN 79 (132)
T ss_dssp SCEEEEECSS--HHHHHHHHHHHHHTT-CEEE--EESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTT
T ss_pred CceEEEEcCc--HHHHHHHHHHHHHcC-CEEE--EECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCC
Confidence 4577777743 445556666555443 2343 2333333333333 4688887543 33 45666666654 36
Q ss_pred CceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 456 AAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 456 ~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+|+|+... ..-.+...... ..| +|+..|.+++.|..+|..+...
T Consensus 80 ~~ii~~s~--~~~~~~~~~~~-~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 80 MPIVYISG--HAALEWASNGV-PDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp CCEEEEES--SCCTTHHHHSC-TTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred CCEEEEeC--CccHHHHHhhc-CCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 77777543 22233322211 123 5899999999999999887653
No 206
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=46.49 E-value=24 Score=30.76 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=30.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p 98 (540)
|||++|... | .|-...++..+++.+.+ .|++|+++-.
T Consensus 2 mkilii~~S--~---~g~t~~la~~i~~~l~~~~g~~v~~~~l 39 (198)
T 3b6i_A 2 AKVLVLYYS--M---YGHIETMARAVAEGASKVDGAEVVVKRV 39 (198)
T ss_dssp CEEEEEECC--S---SSHHHHHHHHHHHHHHTSTTCEEEEEEC
T ss_pred CeEEEEEeC--C---CcHHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 799999764 3 47788899999999998 8999999864
No 207
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=46.04 E-value=22 Score=29.70 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=20.0
Q ss_pred HHHHhHHHHHHHHcCCeEEEEeec
Q 009217 76 ASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|.+-..+++.|.+.||+|+++.+.
T Consensus 12 G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 12 SILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCEEEEECC
Confidence 455588889999999999999864
No 208
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=45.98 E-value=96 Score=23.55 Aligned_cols=109 Identities=14% Similarity=-0.007 Sum_probs=55.6
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHH--HhcCCEEEECCC-CCCCchHHHHHHh--cCCceEE
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLI--FSGSDIILCHSF-HDPLLQVPLKALK--YGAAPIA 460 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~--~~~aDi~v~PS~-~E~fglv~lEAma--~G~pvI~ 460 (540)
+++++.+. +.....++...+..+ -.+. ...+..+.... -...|++++=.. .+.-|+..++.+. ...|+|+
T Consensus 3 ~ilivdd~--~~~~~~l~~~l~~~~-~~v~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~ 77 (121)
T 1zh2_A 3 NVLIVEDE--QAIRRFLRTALEGDG-MRVF--EAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIV 77 (121)
T ss_dssp EEEEECSC--HHHHHHHHHHHHTTT-CEEE--EESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEeCC--HHHHHHHHHHHhcCC-CEEE--EeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEE
Confidence 45566643 344555555554432 2332 22222222122 234688776332 2334666666664 3466666
Q ss_pred EecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 461 VTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 461 ~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
... ..-.+..... ...|..+|+..|.+.++|..++..++
T Consensus 78 ~s~--~~~~~~~~~~-~~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 78 LSA--RSEESDKIAA-LDAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp EES--CCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEC--CCCHHHHHHH-HhcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 432 2222221110 01466789999999999999887764
No 209
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.79 E-value=22 Score=31.62 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEEec-ChHHHHHHHhcCCEEEECCC-CC
Q 009217 368 VFLENLKAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDSY-DDALLHLIFSGSDIILCHSF-HD 442 (540)
Q Consensus 368 KG~~~Li~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~~~-~~~~~~~~~~~aDi~v~PS~-~E 442 (540)
|=+..|.+|+..+.. .+..++++|+.. ..++.+.+.|+..+. -+-+|+++. ..... .-|..-|++++..- .|
T Consensus 47 kT~~~L~~A~~~i~~~~~~~ilfV~tk~--~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~-~~~~~Pdllvv~Dp~~d 123 (202)
T 3j20_B 47 KTDERLKVAGKFLAKFEPQSILAVSVRL--YGQKPVKKFGEVTGARAIPGRFLPGTMTNPAV-KNFFEPDVLIVTDPRAD 123 (202)
T ss_dssp HHHHHHHHHHHHHHHSCSSCEEEECCCT--TTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSS-SSCCCCSEEEESCTTTS
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEecCh--HHHHHHHHHHHHHCCceeCceecCCCcccHhH-HhccCCCeEEEeCCccc
Confidence 335567777665544 467888899654 245566667776542 122345443 22221 22345677766643 44
Q ss_pred CCchHHHHHHhcCCceEE-EecCCCcccccee
Q 009217 443 PLLQVPLKALKYGAAPIA-VTSSDIEFRHFAE 473 (540)
Q Consensus 443 ~fglv~lEAma~G~pvI~-~~~~~gg~~e~v~ 473 (540)
- .++.||...|.|+|+ .++ ...++.|+
T Consensus 124 ~--~ai~EA~~l~IP~Ial~DT--n~~p~~Vd 151 (202)
T 3j20_B 124 H--QAMREAVEIGIPIVALVDT--ENLLSYVD 151 (202)
T ss_dssp H--HHHHHHHHHTCCEEEEECT--TCCCTTCC
T ss_pred h--HHHHHHHHcCCCEEEEEcC--CCCccccC
Confidence 4 677899999999997 444 44455554
No 210
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=45.29 E-value=1.5e+02 Score=25.48 Aligned_cols=112 Identities=11% Similarity=0.026 Sum_probs=57.0
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh--cCCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK--YGAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma--~G~pvI 459 (540)
.+++|+.+. +.....++...+..+ -.|.. ...+..+....+ ...|++++=-. -+.-|+.+++.+. ...|+|
T Consensus 14 ~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~-~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii 89 (205)
T 1s8n_A 14 RRVLIAEDE--ALIRMDLAEMLREEG-YEIVG-EAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIV 89 (205)
T ss_dssp CEEEEECSS--HHHHHHHHHHHHHTT-CEEEE-EESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ccEEEEECC--HHHHHHHHHHHHHCC-CEEEE-EeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEE
Confidence 466666643 344455555544432 23321 112222222222 23577776433 2345666666654 234666
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+... ..-.+..... ...|..+|+..|.+++.|..+|..++.
T Consensus 90 ~lt~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 90 VLTA--FSQRDLVERA-RDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp EEEE--GGGHHHHHTT-GGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEec--CCCHHHHHHH-HhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 6432 1222222111 125777899999999999888887654
No 211
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=44.95 E-value=30 Score=27.25 Aligned_cols=42 Identities=10% Similarity=0.128 Sum_probs=30.5
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
+.|||+.+|.. ..|-. ..+..+-+.+.+.|.++.|-+-....
T Consensus 3 ~~mkIlvvC~~-----G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~ 44 (109)
T 2l2q_A 3 GSMNILLVCGA-----GMSTS-MLVQRIEKYAKSKNINATIEAIAETR 44 (109)
T ss_dssp CCEEEEEESSS-----SCSSC-HHHHHHHHHHHHHTCSEEEEEECSTT
T ss_pred CceEEEEECCC-----hHhHH-HHHHHHHHHHHHCCCCeEEEEecHHH
Confidence 34999999973 34444 77788888999999988876654443
No 212
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=44.42 E-value=24 Score=31.32 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=27.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~p~ 99 (540)
|||++-.+. +....++..|.+.|.+. |++|+|+...
T Consensus 1 ~~IllgvTG-------siaa~k~~~ll~~L~~~~g~~V~vv~T~ 37 (197)
T 1sbz_A 1 MKLIVGMTG-------ATGAPLGVALLQALREMPNVETHLVMSK 37 (197)
T ss_dssp CEEEEEECS-------SSCHHHHHHHHHHHHTCTTCEEEEEECH
T ss_pred CEEEEEEeC-------hHHHHHHHHHHHHHHhccCCEEEEEECc
Confidence 688876541 22345789999999999 9999999754
No 213
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=44.39 E-value=2e+02 Score=26.71 Aligned_cols=120 Identities=9% Similarity=-0.013 Sum_probs=65.8
Q ss_pred HHHHHHHHh-cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEE----CCCCCCCch
Q 009217 374 KAVVRGAKM-RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILC----HSFHDPLLQ 446 (540)
Q Consensus 374 i~A~~~l~~-~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~----PS~~E~fgl 446 (540)
-.|...+.. ...+++++.+. +.....++.+-+..+ -.|.. ..-+..+.-..+. ..|++++ |-...|+-+
T Consensus 149 ~rA~~~Lr~~l~~rILvVdD~--~~~~~~l~~~L~~~g-~~v~~-~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~ 224 (286)
T 3n0r_A 149 GDAQAEIDAELATEVLIIEDE--PVIAADIEALVRELG-HDVTD-IAATRGEALEAVTRRTPGLVLADIQLADGSSGIDA 224 (286)
T ss_dssp HHHHHHHHTSCCCEEEEECCS--HHHHHHHHHHHHHTT-CEEEE-EESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTT
T ss_pred HHHHhhhhccCCCcEEEEcCC--HHHHHHHHHHhhccC-ceEEE-EeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHH
Confidence 344444433 24567777653 455666666666654 23330 2334333333333 3588777 411222222
Q ss_pred -HHHHHHhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 447 -VPLKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 447 -v~lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
-.+-+.. .+|+|+... - .+..... ...|.++|+..|.++++|..+|..++.
T Consensus 225 ~~~ir~~~-~~piI~lT~---~-~~~~~~~-~~~G~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 225 VKDILGRM-DVPVIFITA---F-PERLLTG-ERPEPTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp THHHHHHT-TCCEEEEES---C-GGGGCCS-SSCCCSSEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCEEEEeC---C-HHHHHHH-HhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 2233444 888888643 2 2322211 125777899999999999999998864
No 214
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=44.32 E-value=1.1e+02 Score=26.56 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=40.1
Q ss_pred cCCEEEECCC-CCCCchHHHHHHh-------cCCceEEEecCCCc-cccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 431 GSDIILCHSF-HDPLLQVPLKALK-------YGAAPIAVTSSDIE-FRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 431 ~aDi~v~PS~-~E~fglv~lEAma-------~G~pvI~~~~~~gg-~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
..|++++=-. -+.-|+.+++.+. ..+|+|+... .. ..+.+... ...|..+|+..|.+ .|.++|..+
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~--~~~~~~~~~~~-~~~Ga~~~l~KP~~--~L~~~i~~~ 193 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSG--HDPGSEEARET-IQAGMDAFLDKSLN--QLANVIREI 193 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEES--SCCCHHHHHHH-HHHTCSEEEETTCT--THHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEEC--CCCcHHHHHHH-HhCCCCEEEcCcHH--HHHHHHHHH
Confidence 3577776433 3445677766664 4567777542 11 22222110 11466789999888 899999988
Q ss_pred hcCHH
Q 009217 502 KNNPL 506 (540)
Q Consensus 502 ~~~~~ 506 (540)
++...
T Consensus 194 l~~~~ 198 (206)
T 3mm4_A 194 ESKRH 198 (206)
T ss_dssp C----
T ss_pred HhhhH
Confidence 75443
No 215
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=43.90 E-value=25 Score=31.69 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=25.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 2 ~k~vlITG------as~gIG---~~ia~~l~~~G~~V~~~~r 34 (235)
T 3l77_A 2 MKVAVITG------ASRGIG---EAIARALARDGYALALGAR 34 (235)
T ss_dssp CCEEEEES------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 67777775 357777 6788999999999877764
No 216
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=43.48 E-value=27 Score=31.10 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=27.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc--CCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK--GHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~--Gh~V~vi~p 98 (540)
||||+|... |....|=....+..+.+.+.++ |++|+++-.
T Consensus 2 mkiLii~gS--pr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 2 SRILAVHAS--PRGERSQSRRLAEVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCEEEEECC--SCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred CEEEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 799999874 5311122455666777888887 999999864
No 217
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=43.36 E-value=31 Score=30.04 Aligned_cols=40 Identities=8% Similarity=-0.020 Sum_probs=29.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcC--CeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG--HLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G--h~V~vi~p 98 (540)
||||+|... |....|-...++..+.+.+.+.| ++|+++-.
T Consensus 2 mkilii~~S--~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 2 SKVLVLKSS--ILAGYSQSGQLTDYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CEEEEEECC--SSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEET
T ss_pred CeEEEEEeC--CCCCCChHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 799999864 43112556777777888898887 99988864
No 218
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=43.21 E-value=17 Score=31.64 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=27.0
Q ss_pred ceEEEEEeccccccccccHH-HHHhHHHHHHHHcCCeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~-~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
+||++..+ ||.+ .+..+|.+.|.+.|++|+|+....
T Consensus 6 k~IllgvT--------Gs~aa~k~~~ll~~L~~~g~~V~vv~T~~ 42 (175)
T 3qjg_A 6 ENVLICLC--------GSVNSINISHYIIELKSKFDEVNVIASTN 42 (175)
T ss_dssp CEEEEEEC--------SSGGGGGHHHHHHHHTTTCSEEEEEECTG
T ss_pred CEEEEEEe--------CHHHHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 68887765 3332 356789999999999999998543
No 219
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=42.83 E-value=20 Score=33.91 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=24.0
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|+||+.. .+|.+| ..|++.|.++||+|.++...
T Consensus 2 ~~~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVTG-------GTGFLG---QYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CCEEEEET-------TTSHHH---HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC-------CCcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 36777432 235555 67788999999999988754
No 220
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=42.82 E-value=35 Score=28.16 Aligned_cols=42 Identities=10% Similarity=-0.119 Sum_probs=31.0
Q ss_pred Cc-eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 56 GF-HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 56 ~m-kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
.| |++++... .|+. .-...-...++.++.+.||+|.|+.-..
T Consensus 4 ~Mkk~~ivv~~-~P~g--~~~~~~al~~a~a~~a~~~~v~Vff~~D 46 (136)
T 2hy5_B 4 VVKKFMYLNRK-APYG--TIYAWEALEVVLIGAAFDQDVCVLFLDD 46 (136)
T ss_dssp -CCEEEEEECS-CTTT--SSHHHHHHHHHHHHGGGCCEEEEEECGG
T ss_pred chhEEEEEEeC-CCCC--cHHHHHHHHHHHHHHhCCCCEEEEEEhH
Confidence 36 59988864 6752 2356667889999999999999998543
No 221
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=42.49 E-value=45 Score=31.08 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=30.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.++|||+.|++. -| .=|-.+.+.+||..|++.|..|.+|=
T Consensus 79 ~~~~kvI~vts~-kg---G~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 79 DSAVQSIVITSE-AP---GAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp TCCCCEEEEECS-ST---TSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECC-CC---CCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 456899988863 11 12556788899999999999999884
No 222
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=42.43 E-value=1.1e+02 Score=23.11 Aligned_cols=107 Identities=10% Similarity=0.048 Sum_probs=57.9
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCCceE
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGAAPI 459 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~pvI 459 (540)
+++++.+. +.....++...+..+ -+|.. .-+.++....+. ..|++++=.. .+.-|+..++.+. ...|+|
T Consensus 3 ~ilivdd~--~~~~~~l~~~l~~~~-~~v~~--~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii 77 (116)
T 3a10_A 3 RILVVDDE--PNIRELLKEELQEEG-YEIDT--AENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKII 77 (116)
T ss_dssp EEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred EEEEEeCC--HHHHHHHHHHHHHCC-CEEEE--eCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEE
Confidence 45666643 445556666555543 24432 223222222332 3588777543 2345666666654 356666
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
+... ..-.+ ... ...|..+|+..|.+.+.|..++..++
T Consensus 78 ~~s~--~~~~~-~~~--~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 78 LLTA--YSHYR-SDM--SSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEES--CGGGG-GCG--GGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEEC--CcchH-HHH--HhccccceEECCCCHHHHHHHHHHHh
Confidence 6532 12122 111 12466789999999999999887754
No 223
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=42.36 E-value=30 Score=32.59 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 19 k~vlVTG------asggIG---~~la~~l~~~G~~V~~~~r 50 (303)
T 1yxm_A 19 QVAIVTG------GATGIG---KAIVKELLELGSNVVIASR 50 (303)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357777 5788899999999888763
No 224
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=42.30 E-value=57 Score=25.83 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=29.4
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
.+.+||+.+|.. ..|-.......|-+.+.+.|.++.|-.-...
T Consensus 19 ~~~kkIlvvC~s-----G~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~ 61 (113)
T 1tvm_A 19 GSKRKIIVACGG-----AVATSTMAAEEIKELCQSHNIPVELIQCRVN 61 (113)
T ss_dssp CSSEEEEEESCS-----CSSHHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred ccccEEEEECCC-----CHHHHHHHHHHHHHHHHHcCCeEEEEEecHH
Confidence 345789999972 3333333578888899999998877664443
No 225
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=42.12 E-value=2.3e+02 Score=27.14 Aligned_cols=104 Identities=11% Similarity=0.090 Sum_probs=62.2
Q ss_pred eccCCCCCCCCCCCCcccccccCcccccCcHHHHHHHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcE
Q 009217 307 APCGFDSSTWDPSNDKFLTENYCAEDMKGKTVCKVTLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQ 386 (540)
Q Consensus 307 I~nGvd~~~~~p~~~~~l~~~~~~~~~~~k~~~~~~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~ 386 (540)
|-||-| +.++|.-. -.+--.+++.+|--. ...|.++|-+..- .+.++.++..+ +++
T Consensus 128 VINag~-~~~HPtQa---------------LaDl~Ti~e~~g~l~---glkva~vGD~~rv--a~Sl~~~~~~~---G~~ 183 (323)
T 3gd5_A 128 VINALT-DHEHPCQV---------------VADLLTIRENFGRLA---GLKLAYVGDGNNV--AHSLLLGCAKV---GMS 183 (323)
T ss_dssp EEEEEC-SSCCHHHH---------------HHHHHHHHHHHSCCT---TCEEEEESCCCHH--HHHHHHHHHHH---TCE
T ss_pred EEeCCC-CCCCcHHH---------------HHHHHHHHHHhCCCC---CCEEEEECCCCcH--HHHHHHHHHHc---CCE
Confidence 558877 67777410 002234667777322 3678899987222 45566666544 899
Q ss_pred EEEEecCC---ChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC
Q 009217 387 FVFTGTNK---LPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 387 lvi~G~g~---~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
+.+++... ++.+.+..++.+++.+ ..+.+. .+ ..+.+..||++....+
T Consensus 184 v~~~~P~~~~~~~~~~~~~~~~a~~~g-~~v~~~--~d---~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 184 IAVATPEGFTPDPAVSARASEIAGRTG-AEVQIL--RD---PFEAARGAHILYTDVW 234 (323)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHHHHHT-CCEEEE--SC---HHHHHTTCSEEEECCC
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHcC-CeEEEE--CC---HHHHhcCCCEEEEece
Confidence 99998532 2334455566666654 466543 12 2356799999988765
No 226
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=41.95 E-value=2.2e+02 Score=27.37 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=53.5
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC---ChhHHHHHHHHHHHhCCCcEEEEE
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK---LPSASRALVSFQEELKDGIVIFVD 418 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~---~~~~~~~l~~l~~~~~~~~v~f~~ 418 (540)
.+++.+|--. ...|.++|-+.. =.+.++.++..+ ++++.+++... ++...+.+++.+++.+ ..+.+.
T Consensus 169 TI~E~~G~l~---glkva~vGD~~n--va~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G-~~v~~~- 238 (340)
T 4ep1_A 169 TIYEETNTFK---GIKLAYVGDGNN--VCHSLLLASAKV---GMHMTVATPVGYRPNEEIVKKALAIAKETG-AEIEIL- 238 (340)
T ss_dssp HHHHHHSCCT---TCEEEEESCCCH--HHHHHHHHHHHH---TCEEEEECCTTCCCCHHHHHHHHHHHHHHC-CCEEEE-
T ss_pred HHHHHhCCCC---CCEEEEECCCch--hHHHHHHHHHHc---CCEEEEECCcccCCCHHHHHHHHHHHHHcC-CeEEEE-
Confidence 4667777322 367889998722 145566666555 79999998532 2334455666666665 466543
Q ss_pred ecChHHHHHHHhcCCEEEECCC
Q 009217 419 SYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
.+ ..+.+..||++..-.+
T Consensus 239 -~d---~~eav~~aDVvyt~~w 256 (340)
T 4ep1_A 239 -HN---PELAVNEADFIYTDVW 256 (340)
T ss_dssp -SC---HHHHHTTCSEEEECCC
T ss_pred -CC---HHHHhCCCCEEEecCc
Confidence 12 2356899999998765
No 227
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=41.83 E-value=26 Score=33.44 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=24.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.++|+||+ +. ..|++| ..|++.|.++||+|.++..
T Consensus 9 ~~~~~vlV-TG------atG~iG---~~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 9 PEGSLVLV-TG------ANGFVA---SHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp CTTCEEEE-ET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCCCEEEE-EC------CccHHH---HHHHHHHHHCCCEEEEEeC
Confidence 44567764 42 246666 5678889999999988764
No 228
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=41.81 E-value=32 Score=29.98 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=28.1
Q ss_pred ceEEEEEecccccccccc--HHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGS--LASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG--~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+.|++. .|| -.+.+.+|+..|+++|+.|.++=.
T Consensus 1 M~vi~v~s~------kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 1 MKVISFLNP------KGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp CEEEEECCS------STTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEeC------CCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 788888762 244 456778899999999999998854
No 229
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=41.57 E-value=21 Score=32.80 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=26.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 6 ~~k~vlVTG------as~gIG---~~~a~~l~~~G~~v~~~~~ 39 (264)
T 3i4f_A 6 FVRHALITA------GTKGLG---KQVTEKLLAKGYSVTVTYH 39 (264)
T ss_dssp CCCEEEETT------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred ccCEEEEeC------CCchhH---HHHHHHHHHCCCEEEEEcC
Confidence 467777764 357777 6888999999999988754
No 230
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=41.49 E-value=36 Score=31.79 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=27.8
Q ss_pred CceEEEEEecccccccccc-HHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG-~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||||+|... |. .+| ....+..+.+.|.+.||+|+++-.
T Consensus 2 MmkiLiI~gS--pr--~~s~t~~la~~~~~~l~~~g~eV~~~dL 41 (273)
T 1d4a_A 2 GRRALIVLAH--SE--RTSFNYAMKEAAAAALKKKGWEVVESDL 41 (273)
T ss_dssp CCEEEEEECC--SC--TTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CCEEEEEEeC--CC--CccHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 3799999874 53 244 345556667778889999999864
No 231
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=41.47 E-value=16 Score=33.68 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=24.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 1 Mk~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 33 (254)
T 1zmt_A 1 MSTAIVTN------VKHFGG---MGSALRLSEAGHTVACHDE 33 (254)
T ss_dssp -CEEEESS------TTSTTH---HHHHHHHHHTTCEEEECCG
T ss_pred CeEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 67777775 357887 5688899999999887653
No 232
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=41.46 E-value=1.4e+02 Score=25.61 Aligned_cols=113 Identities=10% Similarity=-0.087 Sum_probs=62.1
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh---cCCc
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK---YGAA 457 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma---~G~p 457 (540)
..+++|+.+. +.....++.+.+..+ -.|. ..-+.++....+. ..|++++=-. -+.-|+.+++.+. .++|
T Consensus 4 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ 78 (208)
T 1yio_A 4 KPTVFVVDDD--MSVREGLRNLLRSAG-FEVE--TFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIP 78 (208)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHTTT-CEEE--EESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCC
T ss_pred CCEEEEEcCC--HHHHHHHHHHHHhCC-ceEE--EcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 3466677643 445555665555432 2333 2223333323332 2477776432 3456777777664 3677
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+|+... ..-.+.+... ...|..+|+..|.++++|..+|..++..
T Consensus 79 ii~ls~--~~~~~~~~~a-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 79 IVFITA--HGDIPMTVRA-MKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EEEEES--CTTSCCCHHH-HHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEeC--CCCHHHHHHH-HHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 777533 2222222111 1157778999999999999998887643
No 233
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=41.25 E-value=80 Score=28.63 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=24.2
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHc--CCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK--GHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~--Gh~V~vi~p~ 99 (540)
.+|||+++.+. .+.....+.++|.+. +++|..+...
T Consensus 21 ~~~rI~~l~SG---------~g~~~~~~l~~l~~~~~~~~I~~Vvt~ 58 (229)
T 3auf_A 21 HMIRIGVLISG---------SGTNLQAILDGCREGRIPGRVAVVISD 58 (229)
T ss_dssp TCEEEEEEESS---------CCHHHHHHHHHHHTTSSSEEEEEEEES
T ss_pred CCcEEEEEEeC---------CcHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 34899998752 235677788888876 5787655543
No 234
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=41.06 E-value=29 Score=32.50 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=31.3
Q ss_pred HHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCcccc
Q 009217 425 LHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFRH 470 (540)
Q Consensus 425 ~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~e 470 (540)
+.+++..+|++|--+..+..--.+..++..|+|+|+..+ |-..+
T Consensus 67 l~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTT--G~s~~ 110 (272)
T 4f3y_A 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTT--GFSEP 110 (272)
T ss_dssp HHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCC--CCCHH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECC--CCCHH
Confidence 345677899999877655444445678999999999877 54443
No 235
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=40.83 E-value=21 Score=30.56 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=28.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||+++... .+|....++..+++.|.+.|++|.++-.
T Consensus 9 ~~ki~I~Y~S-----~tGnT~~~A~~ia~~l~~~g~~v~~~~~ 46 (167)
T 1ykg_A 9 MPGITIISAS-----QTGNARRVAEALRDDLLAAKLNVKLVNA 46 (167)
T ss_dssp ---CEEEEEC-----SSSHHHHHHHHHHHHHHHHTCCCEEEEG
T ss_pred CCeEEEEEEC-----CchHHHHHHHHHHHHHHHCCCceEEeeh
Confidence 3567666432 4699999999999999999999988754
No 236
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=40.80 E-value=31 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.3
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 16 sggiG---~~~a~~l~~~G~~V~~~~r 39 (244)
T 1cyd_A 16 GKGIG---RDTVKALHASGAKVVAVTR 39 (244)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeC
Confidence 57777 5688899999999988763
No 237
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=40.79 E-value=56 Score=28.79 Aligned_cols=107 Identities=6% Similarity=-0.052 Sum_probs=59.7
Q ss_pred EEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCCCCCCchHHHHHHhc---CCceEEE
Q 009217 387 FVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSFHDPLLQVPLKALKY---GAAPIAV 461 (540)
Q Consensus 387 lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~~E~fglv~lEAma~---G~pvI~~ 461 (540)
++|+.+. +.....++.+.+..+ -.|.. ..+.++....+. ..|++++|. .-|+.+++.+.. .+|+|+.
T Consensus 3 ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~l~~~~~dlvilp~---~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 3 VLLIEKN--SVLGGEIEKGLNVKG-FMADV--TESLEDGEYLMDIRNYDLVMVSD---KNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp EEEECSC--HHHHHHHHHHHGGGT-CCEEE--ESSHHHHHHHHTTSCCSEEEECC---TTHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEcCC--HHHHHHHHHHHHHCC-cEEEE--ECCHHHHHHHHhcCCCCEEEeCC---CCHHHHHHHHHhCCCCCcEEEE
Confidence 4555532 445555655555433 34432 223333333443 358888553 346666666543 6777775
Q ss_pred ecCCCccccceeccCCccccceeecCCC-CHHHHHHHHHHHhcC
Q 009217 462 TSSDIEFRHFAEFDHESTRFSRFISSTF-GNISLSQALEEIKNN 504 (540)
Q Consensus 462 ~~~~gg~~e~v~~~~~~~g~~G~l~~~~-d~~~la~ai~~l~~~ 504 (540)
.. ..-.+.+... ...|..||+..|. ++++|..+|..++..
T Consensus 75 t~--~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 75 SD--NPTSEEEVHA-FEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp ES--SCCHHHHHHH-HHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EC--CCCHHHHHHH-HHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 43 2222222111 0146778999999 999999999988654
No 238
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=40.52 E-value=36 Score=32.05 Aligned_cols=41 Identities=17% Similarity=0.039 Sum_probs=29.9
Q ss_pred CCCceEEEEEecccccccccc-HHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG-~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..+|||+.|+.. |. .+| ....+..+++.+.+.|++|+++-.
T Consensus 56 ~~~mKILiI~GS--~R--~~S~T~~La~~~~~~l~~~G~eveiidL 97 (279)
T 2fzv_A 56 APPVRILLLYGS--LR--ARSFSRLAVEEAARLLQFFGAETRIFDP 97 (279)
T ss_dssp CSCCEEEEEESC--CS--SSCHHHHHHHHHHHHHHHTTCEEEEBCC
T ss_pred CCCCEEEEEEeC--CC--CCCHHHHHHHHHHHHHhhCCCEEEEEeh
Confidence 457999999875 42 245 445666678888888999998854
No 239
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=40.51 E-value=43 Score=26.79 Aligned_cols=40 Identities=10% Similarity=-0.081 Sum_probs=29.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
|++++... .|+. .-.+.-...++.++...||+|.|+.-..
T Consensus 3 k~~~vv~~-~P~g--~~~~~~al~~a~a~~a~~~~v~vff~~D 42 (119)
T 2d1p_B 3 RIAFVFST-APHG--TAAGREGLDALLATSALTDDLAVFFIAD 42 (119)
T ss_dssp CEEEEECS-CTTT--STHHHHHHHHHHHHHTTCSCEEEEECGG
T ss_pred EEEEEEcC-CCCC--cHHHHHHHHHHHHHHhCCCCEEEEEehH
Confidence 58888765 6752 2345666789999999999999998543
No 240
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=40.44 E-value=89 Score=28.25 Aligned_cols=69 Identities=13% Similarity=-0.049 Sum_probs=39.1
Q ss_pred CCEEEECCC-CCCCchHHHHHHh--cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 432 SDIILCHSF-HDPLLQVPLKALK--YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma--~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.|++++=-. -+.-|+.+++.+. ..+|+|+... ..-.+.+... ...|..||+..|.++++|..+|..++.
T Consensus 82 ~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~--~~~~~~~~~a-~~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 82 PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTA--RDTVEEKVRL-LGLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEES--CCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEEC--CCCHHHHHHH-HHCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 466555322 2233455555544 3466666543 2222222110 014677899999999999999998764
No 241
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=40.43 E-value=9.8 Score=35.59 Aligned_cols=32 Identities=16% Similarity=0.045 Sum_probs=23.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||||+.. .+|++| ..+++.|.++||+|+++..
T Consensus 6 m~ilVtG-------atG~iG---~~l~~~L~~~g~~V~~~~r 37 (287)
T 3sc6_A 6 ERVIITG-------ANGQLG---KQLQEELNPEEYDIYPFDK 37 (287)
T ss_dssp EEEEEES-------TTSHHH---HHHHHHSCTTTEEEEEECT
T ss_pred eEEEEEC-------CCCHHH---HHHHHHHHhCCCEEEEecc
Confidence 6777442 246665 5778889999999998875
No 242
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=40.35 E-value=18 Score=35.56 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=22.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEE
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi 96 (540)
.|||++|... ..| ..+|..|+++|++|+|+
T Consensus 1 sm~V~IVGaG------paG-----l~~A~~L~~~G~~v~v~ 30 (412)
T 4hb9_A 1 SMHVGIIGAG------IGG-----TCLAHGLRKHGIKVTIY 30 (412)
T ss_dssp CCEEEEECCS------HHH-----HHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECcC------HHH-----HHHHHHHHhCCCCEEEE
Confidence 3899988541 122 45677899999999998
No 243
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=40.01 E-value=23 Score=34.02 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=24.0
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.++|+||+ +. .+|++| ..|++.|.++||+|.++...
T Consensus 25 ~~~~~vlV-tG------atG~iG---~~l~~~L~~~g~~V~~~~r~ 60 (343)
T 2b69_A 25 KDRKRILI-TG------GAGFVG---SHLTDKLMMDGHEVTVVDNF 60 (343)
T ss_dssp --CCEEEE-ET------TTSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred cCCCEEEE-Ec------CccHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 34567764 32 246665 67788899999999988743
No 244
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=40.01 E-value=41 Score=31.84 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=30.9
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..++||+.|++. -| .=|-.+.+.+||..|++.|..|.+|-.
T Consensus 101 ~~~~kvI~vts~-kg---G~GKTtva~nLA~~lA~~G~rVLLID~ 141 (299)
T 3cio_A 101 ETENNILMITGA-TP---DSGKTFVSSTLAAVIAQSDQKVLFIDA 141 (299)
T ss_dssp SCSCCEEEEEES-SS---SSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECC-CC---CCChHHHHHHHHHHHHhCCCcEEEEEC
Confidence 456788888863 11 125667889999999999999998853
No 245
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=39.95 E-value=25 Score=32.73 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=24.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+||||+.. .|++| ..|++.|.++||+|+++...
T Consensus 3 ~~~ilVtG--------aG~iG---~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIAG--------CGDLG---LELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEEC--------CSHHH---HHHHHHHHHTTCCEEEEECT
T ss_pred CCcEEEEC--------CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 46777542 25565 56788899999999999754
No 246
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=39.93 E-value=18 Score=34.04 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=28.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
.+|+||+|.. |.+....++.|.+.|++|+|+.|..
T Consensus 12 ~~k~VLVVGg-----------G~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGG-----------GEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEE-----------SHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECC-----------cHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 4578887632 4677889999999999999999864
No 247
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=39.90 E-value=57 Score=25.52 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=31.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCCC
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYACM 103 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~~ 103 (540)
.+||+.+|.. . -|.+.++..+-+.+.++|.++.|-.-.....
T Consensus 3 mkkIll~Cg~-----G-~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~ 44 (106)
T 1e2b_A 3 KKHIYLFSSA-----G-MSTSLLVSKMRAQAEKYEVPVIIEAFPETLA 44 (106)
T ss_dssp CEEEEEECSS-----S-TTTHHHHHHHHHHHHHSCCSEEEEEECSSST
T ss_pred CcEEEEECCC-----c-hhHHHHHHHHHHHHHHCCCCeEEEEecHHHH
Confidence 3689999973 2 2445778888889999999999887655443
No 248
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=39.84 E-value=33 Score=30.09 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=29.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHH-HHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGA-LQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~-L~~~Gh~V~vi~p 98 (540)
|||++|... |. ..|-...++..+++. |.+.|++|+++-.
T Consensus 3 mkilii~gS--~r-~~g~t~~la~~i~~~~l~~~g~~v~~~dl 42 (197)
T 2vzf_A 3 YSIVAISGS--PS-RNSTTAKLAEYALAHVLARSDSQGRHIHV 42 (197)
T ss_dssp EEEEEEECC--SS-TTCHHHHHHHHHHHHHHHHSSEEEEEEEG
T ss_pred ceEEEEECC--CC-CCChHHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 799999864 32 235577778888888 8989999998864
No 249
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=39.82 E-value=20 Score=34.04 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=23.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.+.|||.+|.. |-+| ..+++.|.+.||+|+++-
T Consensus 5 ~~~~~I~iIG~--------G~mG---~~~a~~l~~~G~~V~~~d 37 (303)
T 3g0o_A 5 GTDFHVGIVGL--------GSMG---MGAARSCLRAGLSTWGAD 37 (303)
T ss_dssp --CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEEC
T ss_pred CCCCeEEEECC--------CHHH---HHHHHHHHHCCCeEEEEE
Confidence 34589998842 4444 678899999999998874
No 250
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=39.81 E-value=35 Score=31.08 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=30.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~p 98 (540)
||||+|... |. ..|-...++..++++|.+. |++|+++-.
T Consensus 2 mkIliI~gS--~r-~~s~T~~la~~i~~~l~~~~g~~v~~~dl 41 (242)
T 1sqs_A 2 NKIFIYAGV--RN-HNSKTLEYTKRLSSIISSRNNVDISFRTP 41 (242)
T ss_dssp CEEEEEECC--CC-TTCHHHHHHHHHHHHHHHHSCCEEEEECT
T ss_pred CeEEEEECC--CC-CCChHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 799999874 43 2355677778888889888 999998854
No 251
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=39.76 E-value=35 Score=33.88 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=39.8
Q ss_pred hhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 39 ADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+++..+.++..... +.|||+++... + .|....++..+++.+.+.|++|+++-.
T Consensus 240 ~~~l~~~~~~~~~~~-~~~kv~iiy~S--~---~GnT~~la~~i~~~l~~~g~~v~~~~l 293 (414)
T 2q9u_A 240 GLAIAEYDRWSKGQH-CQKKVTVVLDS--M---YGTTHRMALALLDGARSTGCETVLLEM 293 (414)
T ss_dssp HHHHHHHHHHHTTCC-CCSEEEEEECC--S---SSHHHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred HHHHHHHHHHhcCcc-cCCeEEEEEEC--C---CchHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 356666677664321 35799888653 3 588999999999999999999988864
No 252
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=39.63 E-value=1.3e+02 Score=26.41 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=62.3
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh--cCCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK--YGAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma--~G~pvI 459 (540)
.+++|+.+. +...+.++.+.+..+ -.|.. ..+.++....+ ...|++++=-. .+.-|+.+++.+. ..+|+|
T Consensus 5 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii 79 (230)
T 2oqr_A 5 TSVLIVEDE--ESLADPLAFLLRKEG-FEATV--VTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVI 79 (230)
T ss_dssp CEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEE
T ss_pred CeEEEEeCC--HHHHHHHHHHHHHCC-CEEEE--ECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEE
Confidence 466777643 445566666555543 23432 22323222222 24688877433 3445676666654 367777
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
+... ..-.+..... ...|..||+..|.++++|..+|..++..
T Consensus 80 ~lt~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 80 MVTA--RDSEIDKVVG-LELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp EEEC--CHHHHHHHHH-HHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred EEeC--CCcHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 7543 2212221110 0146667999999999999999987653
No 253
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=39.52 E-value=78 Score=28.34 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=22.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCC--eEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH--LVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh--~V~vi~p 98 (540)
|||+++.+ |.+.....+.+++.+.+| +|..+..
T Consensus 2 ~rI~vl~S---------G~g~~~~~~l~~l~~~~~~~~i~~Vvs 36 (216)
T 2ywr_A 2 LKIGVLVS---------GRGSNLQAIIDAIESGKVNASIELVIS 36 (216)
T ss_dssp EEEEEEEC---------SCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred CEEEEEEe---------CCcHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 68998865 223567788888888887 6654443
No 254
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=39.50 E-value=30 Score=31.28 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=25.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 3 ~k~vlVTG------as~GIG---~a~a~~l~~~G~~V~~~~r 35 (235)
T 3l6e_A 3 LGHIIVTG------AGSGLG---RALTIGLVERGHQVSMMGR 35 (235)
T ss_dssp CCEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEEC
Confidence 46677775 357887 6788999999999887754
No 255
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=39.41 E-value=42 Score=29.09 Aligned_cols=39 Identities=5% Similarity=-0.039 Sum_probs=28.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHc------CCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRK------GHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~------Gh~V~vi~p 98 (540)
|||++|... |. ..|-...++..+.+.+.+. |++|+++-.
T Consensus 1 Mkilii~gS--~r-~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl 45 (191)
T 1t0i_A 1 MKVGIIMGS--VR-AKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDL 45 (191)
T ss_dssp CEEEEEECC--CC-SSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECH
T ss_pred CeEEEEeCC--CC-CCCchHHHHHHHHHHHHHhhccCCCCceEEEEeh
Confidence 899999874 43 2255677777778888876 799998853
No 256
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=39.23 E-value=2.1e+02 Score=27.89 Aligned_cols=90 Identities=12% Similarity=0.177 Sum_probs=54.6
Q ss_pred HHHHHhCCC-CCCCceEEEEEeccccc--CCHHHHHHHHHHHHhcCcEEEEEecC-C---ChhHHHHHHHHHHHhCCCcE
Q 009217 342 TLQQQLGLS-KDASTIVVGCIFSDVSD--VFLENLKAVVRGAKMRGIQFVFTGTN-K---LPSASRALVSFQEELKDGIV 414 (540)
Q Consensus 342 ~lr~~~gl~-~~~~~~lv~~vgrl~~~--KG~~~Li~A~~~l~~~~~~lvi~G~g-~---~~~~~~~l~~l~~~~~~~~v 414 (540)
.+++.+|-. .+.-+.++.++|-+... -=.+.++.++..+ ++++.+++.. . ++.+.+.+++++++.+ ..+
T Consensus 178 TI~E~~g~~~l~glkvvva~vGDl~~~~nrva~Sl~~~~~~~---G~~v~~~~P~~~~~~~~~~~~~~~~~a~~~g-~~v 253 (359)
T 1zq6_A 178 ALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRM---GMDVTLLCPTPDYILDERYMDWAAQNVAESG-GSL 253 (359)
T ss_dssp HHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHT---TCEEEEECSSGGGCCCHHHHHHHHHHHHHHS-CEE
T ss_pred HHHHHhCCCcccCCeeEEEEEecccccccchHHHHHHHHHHc---CCEEEEEcCccccCCCHHHHHHHHHHHHHcC-CeE
Confidence 467777741 12222348899987543 2245666666554 7999999854 2 2244555666666764 455
Q ss_pred EEEEecChHHHHHHHhcCCEEEECCC
Q 009217 415 IFVDSYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 415 ~f~~~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
.+. .+ ..+.+..||++..-.+
T Consensus 254 ~~~--~d---~~eav~~aDvVyt~~w 274 (359)
T 1zq6_A 254 QVS--HD---IDSAYAGADVVYAKSW 274 (359)
T ss_dssp EEE--CC---HHHHHTTCSEEEEECC
T ss_pred EEE--CC---HHHHhcCCCEEEECCc
Confidence 543 22 2356899999888764
No 257
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=39.21 E-value=27 Score=34.07 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=28.0
Q ss_pred CCceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+|+++.+++. .||+| +.+.+||.+|+++|+.|.++...
T Consensus 23 ~~~~~i~v~sg------KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 23 KDGTKYIMFGG------KGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp SCSCEEEEEEC------SSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred cCCCEEEEEeC------CCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45566666652 36655 55677889999999999999743
No 258
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=39.08 E-value=58 Score=31.98 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=46.0
Q ss_pred hhHHHhhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 25 SVADLFADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.++-..+..... -.+++..+.++... ++.|||+++... ..|....++..+++.+.+.|++|+++-.
T Consensus 228 ~i~pgHg~~~~~-~~~~~~~~~~~~~~--~~~~k~~i~~~S-----~~gnT~~la~~i~~~l~~~g~~v~~~~~ 293 (404)
T 2ohh_A 228 MIAPSHGQIWTD-PMKIIEAYTGWATG--MVDERVTVIYDT-----MHGSTRKMAHAIAEGAMSEGVDVRVYCL 293 (404)
T ss_dssp EEECSSSCBBSS-HHHHHHHHHHHHTT--CCCSEEEEEECC-----SSSHHHHHHHHHHHHHHTTTCEEEEEET
T ss_pred EEecCCCccccC-HHHHHHHHHHHhcc--CCCCcEEEEEEC-----CChHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 333333333333 56677777777632 456899888643 3588899999999999999999998864
No 259
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=39.08 E-value=25 Score=33.67 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=23.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+|| |+. ..|++| ..|++.|.++||+|.++..
T Consensus 9 ~~~vl-VTG------atGfIG---~~l~~~Ll~~G~~V~~~~r 41 (338)
T 2rh8_A 9 KKTAC-VVG------GTGFVA---SLLVKLLLQKGYAVNTTVR 41 (338)
T ss_dssp CCEEE-EEC------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEE-EEC------CchHHH---HHHHHHHHHCCCEEEEEEc
Confidence 46766 442 246666 5678889999999987664
No 260
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=38.99 E-value=23 Score=32.95 Aligned_cols=24 Identities=21% Similarity=0.047 Sum_probs=18.6
Q ss_pred HHHHhHHHHHHHHcCCeEEEEeec
Q 009217 76 ASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 76 ~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|..=..|++.|.++||+|+++...
T Consensus 14 G~iG~~l~~~L~~~g~~V~~~~r~ 37 (286)
T 3ius_A 14 GYTARVLSRALAPQGWRIIGTSRN 37 (286)
T ss_dssp CHHHHHHHHHHGGGTCEEEEEESC
T ss_pred cHHHHHHHHHHHHCCCEEEEEEcC
Confidence 344467888999999999998753
No 261
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=38.98 E-value=1.4e+02 Score=23.48 Aligned_cols=111 Identities=7% Similarity=-0.061 Sum_probs=63.8
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEEecChHHHHHHHh--------cCCEEEECCC-CCCCchHHHHHHh
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKD-GIVIFVDSYDDALLHLIFS--------GSDIILCHSF-HDPLLQVPLKALK 453 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~-~~v~f~~~~~~~~~~~~~~--------~aDi~v~PS~-~E~fglv~lEAma 453 (540)
..+++|+.+. +.....++...+..+. ..|... -+.++....+. ..|++++=.. .+.-|+.+++.+.
T Consensus 7 ~~~ILivdd~--~~~~~~l~~~L~~~g~~~~v~~~--~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~ 82 (143)
T 2qvg_A 7 KVDILYLEDD--EVDIQSVERVFHKISSLIKIEIA--KSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELR 82 (143)
T ss_dssp CCSEEEECCC--HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHT
T ss_pred CCeEEEEeCC--HHHHHHHHHHHHHhCCCceEEEE--CCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4567777743 4456666666666542 145433 23333334443 4688887543 3445777777765
Q ss_pred -----cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHH
Q 009217 454 -----YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEI 501 (540)
Q Consensus 454 -----~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l 501 (540)
..+|+|+... ..-.+..... ...|..+|+..|.+.++|.+++...
T Consensus 83 ~~~~~~~~~ii~ls~--~~~~~~~~~~-~~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 83 DDSSFTDIEVFVLTA--AYTSKDKLAF-ESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp TSGGGTTCEEEEEES--CCCHHHHHHH-TTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred cCccccCCcEEEEeC--CCCHHHHHHH-HhcCCCeEEECCCCHHHHHHHHHHH
Confidence 4567776543 2222222111 1256778999999999998886543
No 262
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=38.73 E-value=40 Score=30.03 Aligned_cols=41 Identities=2% Similarity=-0.030 Sum_probs=27.7
Q ss_pred CceEEEEEeccccccccccH-HHHHhHHHHHHHHc--CCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRK--GHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~-~~~v~~L~~~L~~~--Gh~V~vi~p 98 (540)
.||||+|... |....+|. ...+..+.+.+.++ |++|+++-.
T Consensus 4 M~kiLiI~gS--pr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 4 MTKVLFVKAN--NRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp CCEEEEEECC--CSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred cCEEEEEEeC--CCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 4799999875 43113454 44556667777777 899998854
No 263
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=38.71 E-value=25 Score=33.54 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=25.7
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
....|||.+|.. | .+-..+++.|.+.||+|+++-.
T Consensus 18 ~~~m~~I~iIG~--------G---~mG~~~A~~l~~~G~~V~~~dr 52 (310)
T 3doj_A 18 GSHMMEVGFLGL--------G---IMGKAMSMNLLKNGFKVTVWNR 52 (310)
T ss_dssp CCCSCEEEEECC--------S---HHHHHHHHHHHHTTCEEEEECS
T ss_pred cccCCEEEEECc--------c---HHHHHHHHHHHHCCCeEEEEeC
Confidence 344589998842 3 4447788999999999988743
No 264
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=38.71 E-value=28 Score=28.81 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|||+++.. ..+|....++..+++.|.+.|++|.++-
T Consensus 2 ~ki~I~Y~-----S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 2 ADITLISG-----STLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CSEEEECC-----TTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEE-----CCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 57776643 2469999999999999999999998763
No 265
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=38.66 E-value=31 Score=33.38 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=25.7
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHH--cCCeEEEEeec
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQR--KGHLVEVILPK 99 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~--~Gh~V~vi~p~ 99 (540)
..++|+||+ +. .+|++| ..|++.|.+ +||+|.++...
T Consensus 7 ~~~~~~vlV-TG------atG~IG---~~l~~~L~~~~~g~~V~~~~r~ 45 (362)
T 3sxp_A 7 ELENQTILI-TG------GAGFVG---SNLAFHFQENHPKAKVVVLDKF 45 (362)
T ss_dssp CCTTCEEEE-ET------TTSHHH---HHHHHHHHHHCTTSEEEEEECC
T ss_pred hcCCCEEEE-EC------CCCHHH---HHHHHHHHhhCCCCeEEEEECC
Confidence 345567764 42 246666 677888999 89999998743
No 266
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=38.60 E-value=39 Score=31.53 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=25.9
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 28 ~~k~~lVTG------as~GIG---~aia~~la~~G~~V~~~~~ 61 (280)
T 4da9_A 28 ARPVAIVTG------GRRGIG---LGIARALAASGFDIAITGI 61 (280)
T ss_dssp CCCEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEec------CCCHHH---HHHHHHHHHCCCeEEEEeC
Confidence 346777775 357777 6788999999999988763
No 267
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=38.54 E-value=42 Score=31.67 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEEec-ChHHHHHHHhcCCEEEECCC-C
Q 009217 368 VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKD--GIVIFVDSY-DDALLHLIFSGSDIILCHSF-H 441 (540)
Q Consensus 368 KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~--~~v~f~~~~-~~~~~~~~~~~aDi~v~PS~-~ 441 (540)
|=...|..|+..+.. .+.+++++|+. +..++.+.+.++..+. -+-+|+++. ... ....+..=|++++..- .
T Consensus 57 kT~e~L~~Aa~~I~~i~~~~~ILfVgTk--~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~-~t~~f~ePdllvV~Dp~~ 133 (305)
T 3iz6_A 57 KTWEKLQLAARVIVAIENPQDIIVQSAR--PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQ-LQTSFSEPRLLILTDPRT 133 (305)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEECCS--HHHHHHHHHHHHHHTCEEECSCCCTTTTTTT-TTSCSSCCSEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCc--HHHHHHHHHHHHHhCCccccCcccCCcccCc-ccccccCCceeEEeCccc
Confidence 335566666655443 45678888864 3345667777776542 011234432 221 1122455677777653 4
Q ss_pred CCCchHHHHHHhcCCceEE-EecCCCcccccee
Q 009217 442 DPLLQVPLKALKYGAAPIA-VTSSDIEFRHFAE 473 (540)
Q Consensus 442 E~fglv~lEAma~G~pvI~-~~~~~gg~~e~v~ 473 (540)
|- ..+.||...|.|+|+ .++ ..-++.|+
T Consensus 134 d~--qAI~EA~~lnIPtIALvDT--nsdp~~VD 162 (305)
T 3iz6_A 134 DH--QPIKESALGNIPTIAFCDT--DSPMRYVD 162 (305)
T ss_dssp TH--HHHHHHHHHTCCEEEEECT--TSCGGGCS
T ss_pred ch--HHHHHHHHcCCCEEEEEcC--CCCccccc
Confidence 44 667899999999998 444 44455554
No 268
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=38.31 E-value=28 Score=34.04 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=27.8
Q ss_pred ceEEEEEeccccccccccHHH--HHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLAS--YVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~--~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+.|++. .||+|+ .+.+||.+|+++|..|.+|=.
T Consensus 1 MkvIav~s~------KGGvGKTT~a~nLA~~LA~~G~rVLlID~ 38 (361)
T 3pg5_A 1 MRTISFFNN------KGGVGKTTLSTNVAHYFALQGKRVLYVDC 38 (361)
T ss_dssp CEEEEBCCS------SCCHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 788888762 477765 556788999999999999853
No 269
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=38.22 E-value=25 Score=30.69 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+|||++ +. ..||+| ..+++.|. +|++|.++..
T Consensus 2 ~kM~vlV-tG------asg~iG---~~~~~~l~-~g~~V~~~~r 34 (202)
T 3d7l_A 2 NAMKILL-IG------ASGTLG---SAVKERLE-KKAEVITAGR 34 (202)
T ss_dssp CSCEEEE-ET------TTSHHH---HHHHHHHT-TTSEEEEEES
T ss_pred CCcEEEE-Ec------CCcHHH---HHHHHHHH-CCCeEEEEec
Confidence 3478664 32 347776 66788888 8999988764
No 270
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=38.05 E-value=21 Score=33.73 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=23.5
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||++|.. |.+| ..++..|.+.||+|+++..
T Consensus 3 ~m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r 34 (316)
T 2ew2_A 3 AMKIAIAGA--------GAMG---SRLGIMLHQGGNDVTLIDQ 34 (316)
T ss_dssp -CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECS
T ss_pred CCeEEEECc--------CHHH---HHHHHHHHhCCCcEEEEEC
Confidence 489988742 5454 5677889999999998854
No 271
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=38.03 E-value=25 Score=31.14 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHcCCeEEEEee
Q 009217 75 LASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 75 ~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|.+-..+++.|.+.||+|.++..
T Consensus 9 ~G~~G~~ia~~l~~~g~~V~~~~r 32 (212)
T 1jay_A 9 TGNLGKGLALRLATLGHEIVVGSR 32 (212)
T ss_dssp TSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 344446778889999999988764
No 272
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=38.03 E-value=40 Score=32.16 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=25.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++||. ..||+| ..+++.|.++|+.|.++..
T Consensus 8 ~k~vlVTG------as~gIG---~~la~~l~~~G~~Vv~~~r 40 (319)
T 3ioy_A 8 GRTAFVTG------GANGVG---IGLVRQLLNQGCKVAIADI 40 (319)
T ss_dssp TCEEEEET------TTSTHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEcC------CchHHH---HHHHHHHHHCCCEEEEEEC
Confidence 35666775 358887 5788999999999887764
No 273
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=38.00 E-value=41 Score=29.66 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=28.4
Q ss_pred ceEEEEEeccccc-cccccHHHHHhHHHHHHHHcC--CeEEEEee
Q 009217 57 FHIIHICTEMDPL-VSIGSLASYVTGLSGALQRKG--HLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~-~~~GG~~~~v~~L~~~L~~~G--h~V~vi~p 98 (540)
||||+|... |. ...|=....+..+.+.+.+.| ++|+++-.
T Consensus 2 ~kilii~gS--~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 2 SKLLVVKAH--PLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp CEEEEEECC--SSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CeEEEEEec--CCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 799999874 43 112445566677888898887 99998854
No 274
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=37.97 E-value=41 Score=30.50 Aligned_cols=32 Identities=9% Similarity=0.063 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 12 k~vlITG------asggiG---~~la~~l~~~G~~V~~~~r 43 (254)
T 2wsb_A 12 ACAAVTG------AGSGIG---LEICRAFAASGARLILIDR 43 (254)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357777 5778999999999988764
No 275
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*
Probab=37.83 E-value=24 Score=33.24 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=23.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
||||+.. .+|++| ..|++.|.++||+|.++..
T Consensus 1 m~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~r 32 (312)
T 3ko8_A 1 MRIVVTG-------GAGFIG---SHLVDKLVELGYEVVVVDN 32 (312)
T ss_dssp CEEEEET-------TTSHHH---HHHHHHHHHTTCEEEEECC
T ss_pred CEEEEEC-------CCChHH---HHHHHHHHhCCCEEEEEeC
Confidence 6776432 246666 6778899999999998864
No 276
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=37.64 E-value=20 Score=34.45 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=21.9
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.++|+||+. . .+|++| ..|++.|.++|+++.|++.
T Consensus 22 ~~~~~vlVt-G------atG~iG---~~l~~~L~~~g~~~~v~~~ 56 (346)
T 4egb_A 22 SNAMNILVT-G------GAGFIG---SNFVHYMLQSYETYKIINF 56 (346)
T ss_dssp --CEEEEEE-T------TTSHHH---HHHHHHHHHHCTTEEEEEE
T ss_pred cCCCeEEEE-C------CccHHH---HHHHHHHHhhCCCcEEEEE
Confidence 455777743 2 245555 6788899999966666553
No 277
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=37.43 E-value=39 Score=31.01 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=24.0
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 9 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 40 (259)
T 4e6p_A 9 KSALITG------SARGIG---RAFAEAYVREGATVAIADI 40 (259)
T ss_dssp CEEEEET------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 5566764 357887 5688999999999987753
No 278
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=37.23 E-value=30 Score=31.89 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCC--cEEEEEec-ChHHHHHHHhcCCEEEECCC-
Q 009217 367 DVFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDG--IVIFVDSY-DDALLHLIFSGSDIILCHSF- 440 (540)
Q Consensus 367 ~KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~--~v~f~~~~-~~~~~~~~~~~aDi~v~PS~- 440 (540)
+|=...|..|+..+.. .+..++++|+. +..++.+.+.++..+.. +-+|+++. ..... .-+..-|++++..-
T Consensus 51 ~kT~~~L~~A~~~i~~i~~~~~vlfVgTk--~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t-~~f~~PdllvV~Dp~ 127 (252)
T 3u5c_A 51 GKTWEKLVLAARIIAAIPNPEDVVAISSR--TFGQRAVLKFAAHTGATPIAGRFTPGSFTNYIT-RSFKEPRLVIVTDPR 127 (252)
T ss_dssp HHHHHHHHHHHHHHTTSSSGGGEEEEECS--HHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTS-TTCCCCSEEEESCTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEeCC--cHHHHHHHHHHHHhCCceecCcccCCcccChhh-hhccCCceEEEeCCc
Confidence 3445566777665543 45678889964 34456677777765421 11234332 22111 23456677777653
Q ss_pred CCCCchHHHHHHhcCCceEE-EecCCCcccccee
Q 009217 441 HDPLLQVPLKALKYGAAPIA-VTSSDIEFRHFAE 473 (540)
Q Consensus 441 ~E~fglv~lEAma~G~pvI~-~~~~~gg~~e~v~ 473 (540)
.|- ..+.||...|.|+|+ .++ ...++.|+
T Consensus 128 ~d~--~ai~EA~~l~IP~Ial~DT--n~~p~~VD 157 (252)
T 3u5c_A 128 SDA--QAIKEASYVNIPVIALTDL--DSPSEFVD 157 (252)
T ss_dssp TTH--HHHHHHHTTTCCEEEEECT--TCCCTTCS
T ss_pred cch--HHHHHHHHcCCCEEEEEcC--CCCcccCC
Confidence 444 677899999999997 455 44455553
No 279
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=37.07 E-value=23 Score=34.13 Aligned_cols=34 Identities=6% Similarity=-0.048 Sum_probs=24.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|+||++. .+|++| ..+++.|.+.||+|.+++..
T Consensus 10 ~~~IlVtG-------atG~iG---~~l~~~L~~~g~~V~~l~R~ 43 (346)
T 3i6i_A 10 KGRVLIAG-------ATGFIG---QFVATASLDAHRPTYILARP 43 (346)
T ss_dssp -CCEEEEC-------TTSHHH---HHHHHHHHHTTCCEEEEECS
T ss_pred CCeEEEEC-------CCcHHH---HHHHHHHHHCCCCEEEEECC
Confidence 46777553 246666 56778899999999998854
No 280
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=36.94 E-value=20 Score=35.17 Aligned_cols=34 Identities=29% Similarity=0.245 Sum_probs=25.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
...|||.+|.. |..| ..++..|++.||+|+++..
T Consensus 27 ~~~mkI~VIGa--------G~mG---~alA~~La~~G~~V~l~~r 60 (356)
T 3k96_A 27 PFKHPIAILGA--------GSWG---TALALVLARKGQKVRLWSY 60 (356)
T ss_dssp CCCSCEEEECC--------SHHH---HHHHHHHHTTTCCEEEECS
T ss_pred ccCCeEEEECc--------cHHH---HHHHHHHHHCCCeEEEEeC
Confidence 44689998853 4444 5678889999999998864
No 281
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=36.93 E-value=32 Score=31.17 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=24.2
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+++|+. ..||+| ..+++.|.++|++|.++...
T Consensus 8 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r~ 40 (241)
T 1dhr_A 8 RRVLVYG------GRGALG---SRCVQAFRARNWWVASIDVV 40 (241)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHTTTCEEEEEESS
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHhCCCEEEEEeCC
Confidence 4555664 357777 57788999999999887643
No 282
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=36.93 E-value=23 Score=31.34 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=27.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||||+|... |.. ++ +.+...+.+++.+.|++|+++-
T Consensus 2 mkiLiI~gs--p~~--~~-s~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 2 PKTLIILAH--PNI--SQ-STVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp CCEEEEECC--TTG--GG-CSHHHHHHHHHTTCTTTEEEEE
T ss_pred CEEEEEEeC--CCc--cH-HHHHHHHHHHHHhCCCeEEEEE
Confidence 799999874 542 22 3677888888888999999885
No 283
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=36.81 E-value=29 Score=33.13 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=25.8
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
...+|+||+.. ..|++| ..|++.|.++||+|.++..
T Consensus 17 ~~~~~~vlVTG-------asG~iG---~~l~~~L~~~g~~V~~~~r 52 (330)
T 2pzm_A 17 RGSHMRILITG-------GAGCLG---SNLIEHWLPQGHEILVIDN 52 (330)
T ss_dssp TTTCCEEEEET-------TTSHHH---HHHHHHHGGGTCEEEEEEC
T ss_pred cCCCCEEEEEC-------CCCHHH---HHHHHHHHHCCCEEEEEEC
Confidence 34458877542 246776 5678889999999998875
No 284
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=36.62 E-value=45 Score=30.35 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=28.5
Q ss_pred ceEEEEEeccccccccc--cHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIG--SLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~G--G~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||+.|++. .| |-.+.+.+|+.+|+++|+.|.++=..
T Consensus 2 ~~vi~v~s~------kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (260)
T 3q9l_A 2 ARIIVVTSG------KGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40 (260)
T ss_dssp CEEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECC------CCCCcHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 578888762 24 45677889999999999999988543
No 285
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=36.24 E-value=47 Score=30.34 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=27.7
Q ss_pred ceEEEEEeccccccccc--cHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIG--SLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~G--G~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+.|++. + | |-.+.+.+|+.+|+++|+.|.++=.
T Consensus 2 ~~~I~v~s~-----k-gGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (263)
T 1hyq_A 2 VRTITVASG-----K-GGTGKTTITANLGVALAQLGHDVTIVDA 39 (263)
T ss_dssp CEEEEEEES-----S-SCSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECC-----C-CCCCHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 477777652 2 4 5567888999999999999998853
No 286
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=36.18 E-value=29 Score=30.80 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=19.8
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||.|..=..+++.|.++||+|.++...
T Consensus 11 GatG~iG~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 11 GASGFVGSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp TCCHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred cCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence 333444467888999999999988754
No 287
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=35.89 E-value=71 Score=31.86 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=48.1
Q ss_pred hHHHhhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 26 VADLFADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||-..+-+..++-.+++..+++++....+.. +|+++-.. ..|..+.++..++++|.+.|.++.++-
T Consensus 236 I~P~HGpi~r~~~~~ii~~Y~~w~~~~~~~~-~v~I~Y~S-----~yGnTe~mA~~ia~gl~~~Gv~~~~~~ 301 (410)
T 4dik_A 236 LLPGHGLIWKKDPQRLLNHYVSVAKGDPKKG-KVTVIYDS-----MYGFVENVMKKAIDSLKEKGFTPVVYK 301 (410)
T ss_dssp EEESSSCBBSSCHHHHHHHHHHHHHTCCCTT-EEEEEEEC-----SSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EecCCcchhhcCHHHHHHHHHHhhccccccc-ceeeEEec-----ccChHHHHHHHHHHHHHhcCCceEEEE
Confidence 3334445666777888888999885433332 67766543 368999999999999999999988764
No 288
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=35.55 E-value=25 Score=33.19 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=23.0
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+|+||+.. .+|++| ..|++.|.++||+|.++.
T Consensus 2 ~~~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 2 NRRVLVTG-------ATGLLG---RAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp CCEEEEET-------TTSHHH---HHHHHHHHTTTCEEEEEC
T ss_pred CCeEEEEC-------CCcHHH---HHHHHHHHhCCCeEEEEc
Confidence 36776432 246666 567888999999999886
No 289
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=35.40 E-value=30 Score=32.04 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=25.4
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 25 ~~k~vlITG------as~gIG---~a~a~~l~~~G~~V~~~~~ 58 (272)
T 4e3z_A 25 DTPVVLVTG------GSRGIG---AAVCRLAARQGWRVGVNYA 58 (272)
T ss_dssp CSCEEEETT------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEcC
Confidence 356777764 357777 6788999999999977643
No 290
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=35.38 E-value=67 Score=25.81 Aligned_cols=109 Identities=12% Similarity=-0.020 Sum_probs=58.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CCCCchHHHHHHh-cCCceE
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HDPLLQVPLKALK-YGAAPI 459 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E~fglv~lEAma-~G~pvI 459 (540)
..+++|+-+.+ .....++.+-+..+ -.|.. ..-+.++.-+++. .-|+.++=-. -+.-|+.+++.+. .++|+|
T Consensus 8 ~~rILiVdD~~--~~~~~l~~~L~~~G-~~v~~-~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI 83 (123)
T 2lpm_A 8 RLRVLVVEDES--MIAMLIEDTLCELG-HEVAA-TASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFI 83 (123)
T ss_dssp CCCEEEESSST--TTSHHHHHHHHHHC-CCCCB-CSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSC
T ss_pred CCEEEEEeCCH--HHHHHHHHHHHHCC-CEEEE-EECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEE
Confidence 45666776543 34455555555554 22211 1123333223332 3477776432 3455677776653 577877
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHh
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIK 502 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~ 502 (540)
.... -+-.+... ..|..+|+..|.++++|.++|.++.
T Consensus 84 ~lTa--~~~~~~~~----~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATG--YGSKGLDT----RYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCT--TCTTSCCS----SSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEec--CccHHHHH----hCCCCcEEECCCCHHHHHHHHHHHH
Confidence 6521 11122211 1355679999999999999887764
No 291
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=35.32 E-value=58 Score=29.41 Aligned_cols=39 Identities=10% Similarity=-0.037 Sum_probs=30.8
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+||.++|+..- + .-|=..++..|+++|+++|..|..+=|
T Consensus 3 ~mk~i~Itgt~-t---~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 3 AMKKFFIIGTD-T---EVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp TCEEEEEEESS-S---SSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCcEEEEEeCC-C---CCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 48999998741 2 236777889999999999999988754
No 292
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=35.26 E-value=40 Score=31.85 Aligned_cols=99 Identities=13% Similarity=0.137 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHh--cCcEEEEEecCCChhHHHHHHHHHHHhCCCcE--EEEEec-ChHHHHHHHhcCCEEEECCC-C
Q 009217 368 VFLENLKAVVRGAKM--RGIQFVFTGTNKLPSASRALVSFQEELKDGIV--IFVDSY-DDALLHLIFSGSDIILCHSF-H 441 (540)
Q Consensus 368 KG~~~Li~A~~~l~~--~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v--~f~~~~-~~~~~~~~~~~aDi~v~PS~-~ 441 (540)
|=+..|.+|+..+.. .+.+++++|.. +..++.+.+.++..+..-| +|+++. .... ..-+..=|++++-.- .
T Consensus 53 kT~~~L~~A~~~i~~i~~~~~ILfVgTk--~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~-t~~f~~PdlliV~Dp~~ 129 (295)
T 2zkq_b 53 RTWEKLLLAARAIVAIENPADVSVISSR--NTGQRAVLKFAAATGATPIAGRFTPGTFTNQI-QAAFREPRLLVVTDPRA 129 (295)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGEEEEECS--HHHHHHHHHHHHHHCCEEEESSCCCC-CCCTT-CSSCCCCSEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCc--HHHHHHHHHHHHHhCCceecceEecccccCcc-cccccCCCeEEEeCCCc
Confidence 335566666655442 46778899954 3345667777776642111 234432 2211 112455677777653 4
Q ss_pred CCCchHHHHHHhcCCceEEE-ecCCCcccccee
Q 009217 442 DPLLQVPLKALKYGAAPIAV-TSSDIEFRHFAE 473 (540)
Q Consensus 442 E~fglv~lEAma~G~pvI~~-~~~~gg~~e~v~ 473 (540)
| -..+.||...|.|+|+- |+ ...++.|+
T Consensus 130 e--~~AI~EA~~lgIPvIalvDT--n~dp~~VD 158 (295)
T 2zkq_b 130 D--HQPLTEASYVNLPTIALCNT--DSPLRYVD 158 (295)
T ss_dssp T--HHHHHHHHHHTCCEEEEECT--TCCCTTCS
T ss_pred c--hhHHHHHHHhCCCEEEEecC--CCCcccCC
Confidence 4 37789999999999984 44 44455554
No 293
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=35.25 E-value=50 Score=30.78 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=26.8
Q ss_pred CceEEEEEecccccccccc--HHHHHhHHHHHHHHcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGS--LASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG--~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+|||+.|+. -|| -.+.+.+|+.+|+++|+.|.+|=
T Consensus 1 ~MkvIavs~-------KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 1 AMRQCAIYG-------KGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CCEEEEEEE-------CTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEeC-------CCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 488888842 244 45577799999999999998884
No 294
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=35.07 E-value=54 Score=30.59 Aligned_cols=43 Identities=14% Similarity=0.021 Sum_probs=27.5
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
.-++|+||.|++ +|... ...+..+...+.++|++|+|++-..+
T Consensus 4 ~~~~~rvLvv~a--HPDDe----~l~~GGtia~~~~~G~~V~vv~~T~G 46 (270)
T 3dfi_A 4 DADRTRILAISP--HLDDA----VLSVGASLAQAEQDGGKVTVFTVFAG 46 (270)
T ss_dssp --CCSEEEEEES--STTHH----HHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCCCEEEEEe--CCchH----HHhhHHHHHHHHhCCCeEEEEEEeCC
Confidence 345789999998 46532 23333444456678999999985444
No 295
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=35.03 E-value=61 Score=30.69 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=34.2
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCCC
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYAC 102 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~~ 102 (540)
.+++.+|+++|.. |....|-.......+.+.|.+.|++++++...++.
T Consensus 4 ~~~~m~~~~vi~N---p~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~ 51 (304)
T 3s40_A 4 TKTKFEKVLLIVN---PKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQG 51 (304)
T ss_dssp -CCSCSSEEEEEC---TTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTT
T ss_pred ccCCCCEEEEEEC---cccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcc
Confidence 3566688988864 55433445567788888999999999998765543
No 296
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=34.88 E-value=38 Score=33.08 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+|+||+ +. ..|++| ..|++.|.++||+|.++...
T Consensus 28 ~~~~vlV-tG------atG~iG---~~l~~~L~~~g~~V~~~~r~ 62 (379)
T 2c5a_A 28 ENLKISI-TG------AGGFIA---SHIARRLKHEGHYVIASDWK 62 (379)
T ss_dssp SCCEEEE-ET------TTSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred cCCeEEE-EC------CccHHH---HHHHHHHHHCCCeEEEEECC
Confidence 3466664 42 246665 66778899999999988743
No 297
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=34.87 E-value=51 Score=30.97 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=30.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..+.||+.|++. -| .=|-.+.+.+||..|++.|..|.+|=.
T Consensus 89 ~~~~kvI~vts~-kg---G~GKTtva~nLA~~lA~~G~rVLLID~ 129 (286)
T 3la6_A 89 QAQNNVLMMTGV-SP---SIGMTFVCANLAAVISQTNKRVLLIDC 129 (286)
T ss_dssp TTTCCEEEEEES-SS---SSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCCCeEEEEECC-CC---CCcHHHHHHHHHHHHHhCCCCEEEEec
Confidence 445688888873 11 125677888999999999999999853
No 298
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=34.73 E-value=33 Score=34.81 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=30.9
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHc--CCeEEEEeecC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK--GHLVEVILPKY 100 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~--Gh~V~vi~p~~ 100 (540)
+++||+++.. | ..|=-.=...|++.|+++ ||+|+++++..
T Consensus 8 ~~~~vv~~p~---p---~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~ 49 (463)
T 2acv_A 8 KNSELIFIPA---P---GIGHLASALEFAKLLTNHDKNLYITVFCIKF 49 (463)
T ss_dssp HCEEEEEECC---S---STTTHHHHHHHHHHHHHTCTTEEEEEEECCC
T ss_pred CCCEEEEEcC---c---ccchHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 3479998753 3 245556678899999999 99999998754
No 299
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=34.58 E-value=39 Score=31.99 Aligned_cols=43 Identities=19% Similarity=-0.041 Sum_probs=29.4
Q ss_pred HHHHHhcCCEEEECCCCCCCchHHHHHHhcCCceEEEecCCCccc
Q 009217 425 LHLIFSGSDIILCHSFHDPLLQVPLKALKYGAAPIAVTSSDIEFR 469 (540)
Q Consensus 425 ~~~~~~~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~~~gg~~ 469 (540)
+.+++..+|++|--|..+..--.+..+...|+|+|+..+ |...
T Consensus 82 l~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTT--G~~~ 124 (288)
T 3ijp_A 82 PESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTT--GFSK 124 (288)
T ss_dssp HHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCC--CCCH
T ss_pred HHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECC--CCCH
Confidence 345678999999666544333334567899999998777 5444
No 300
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=34.46 E-value=30 Score=32.70 Aligned_cols=34 Identities=18% Similarity=-0.007 Sum_probs=22.7
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+.++|+. .+|++| ..|++.|.++||+|.++..
T Consensus 11 ~~~~vlVTG------atG~iG---~~l~~~L~~~G~~V~~~~r 44 (321)
T 2pk3_A 11 GSMRALITG------VAGFVG---KYLANHLTEQNVEVFGTSR 44 (321)
T ss_dssp --CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CcceEEEEC------CCChHH---HHHHHHHHHCCCEEEEEec
Confidence 344444653 346666 6678889999999998764
No 301
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=34.38 E-value=23 Score=31.41 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=21.9
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEE-EE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVE-VI 96 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~-vi 96 (540)
+++|||+.|+.. |. .+|....+.+......+.|++|+ ++
T Consensus 4 M~~mkIl~I~GS--~r--~~s~t~~la~~~~~~~~~g~~v~~~i 43 (199)
T 4hs4_A 4 TSPLHFVTLLGS--LR--KASFNAAVARALPEIAPEGIAITPLG 43 (199)
T ss_dssp -CCEEEEEEECC--CS--TTCHHHHHHHHHHHHCCTTEEEEECC
T ss_pred CCCCEEEEEEcC--CC--CCChHHHHHHHHHHHccCCCEEEEEE
Confidence 456999999874 42 35544433333333224688888 44
No 302
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=34.17 E-value=23 Score=32.78 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=25.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||.++||. ..||+| ..|++.|.++|++|.++...
T Consensus 3 ~k~vlVTG------asg~IG---~~la~~L~~~G~~V~~~~r~ 36 (267)
T 3rft_A 3 MKRLLVTG------AAGQLG---RVMRERLAPMAEILRLADLS 36 (267)
T ss_dssp EEEEEEES------TTSHHH---HHHHHHTGGGEEEEEEEESS
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHhcCCEEEEEecC
Confidence 56666764 357887 56788899999999887643
No 303
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=34.12 E-value=27 Score=31.49 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=23.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||.++|+. ..||+| ..+++.|.++|++|.++.
T Consensus 1 ~k~vlITG------asggiG---~~~a~~l~~~G~~v~~~~ 32 (245)
T 2ph3_A 1 MRKALITG------ASRGIG---RAIALRLAEDGFALAIHY 32 (245)
T ss_dssp CCEEEETT------TTSHHH---HHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEc
Confidence 34555653 346666 678889999999998873
No 304
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=34.08 E-value=53 Score=29.34 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=28.1
Q ss_pred ceEEEEEeccccccccc--cHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIG--SLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~G--G~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||+.|++. .| |-.+.+.+|+.+|+++|+.|.++=..
T Consensus 2 ~~~i~v~s~------kgGvGKTt~a~~LA~~la~~g~~VlliD~D 40 (237)
T 1g3q_A 2 GRIISIVSG------KGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECS------STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEecC------CCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 477777752 24 45677889999999999999998543
No 305
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=34.06 E-value=61 Score=29.67 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
-++.||.++|+..- + -=|-..++..|+++|+++|..|..+=|
T Consensus 17 ~~~m~k~i~ItgT~-t---~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 17 LYFQGHMLFISATN-T---NAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp --CCCEEEEEEESS-T---TSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HhhcCcEEEEEeCC-C---CCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 34567999998731 1 236677889999999999999998854
No 306
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=33.85 E-value=53 Score=29.93 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=23.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~vlITG------asggiG---~~la~~l~~~G~~V~~~~r 39 (264)
T 2pd6_A 8 ALALVTG------AGSGIG---RAVSVRLAGEGATVAACDL 39 (264)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357777 6788999999999988763
No 307
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=33.77 E-value=29 Score=33.14 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=26.0
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|||+++.. | ....+++++.++||+|.++.+.
T Consensus 2 ~m~Ililg~---------g---~~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 2 KVRIATYAS---------H---SALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CSEEEEESS---------T---THHHHHHHHHHTTCCEEEESCG
T ss_pred ceEEEEECC---------h---hHHHHHHHHHhCCCEEEEEECC
Confidence 489998753 3 5678999999999999999865
No 308
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=33.74 E-value=75 Score=31.08 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=46.9
Q ss_pred hhHHHhhhcCCCCchhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 25 SVADLFADILPEGDADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.++-..+.+..++-.+.+.++.++.... +.|||+++... ..|-...++..+++.|.+.|++|+++-.
T Consensus 222 ~i~p~Hg~~~~~~~~~~l~~~~~~~~~~--~~~~i~i~y~S-----~~GnT~~lA~~ia~~l~~~g~~v~~~~~ 288 (398)
T 1ycg_A 222 TIAPSHGIIWRKDPGRIIEAYARWAEGQ--GKAKAVIAYDT-----MWLSTEKMAHALMDGLVAGGCEVKLFKL 288 (398)
T ss_dssp EEEESSSCBBCSCHHHHHHHHHHHHHTC--CCSEEEEEECC-----SSSHHHHHHHHHHHHHHHTTCEEEEEEG
T ss_pred EEECCCchhhhCCHHHHHHHHHHHhccC--CcCeEEEEEEC-----CccHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3444444455555667777877776532 24788877542 3688999999999999999999988764
No 309
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=33.67 E-value=1.2e+02 Score=27.17 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=24.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEeecC
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILPKY 100 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p~~ 100 (540)
..+|||+++.+ |-|.-...|..+..+ .+++|..+....
T Consensus 3 ~~~~riavl~S---------G~Gsnl~all~~~~~~~~~eI~~Vis~~ 41 (215)
T 3tqr_A 3 REPLPIVVLIS---------GNGTNLQAIIGAIQKGLAIEIRAVISNR 41 (215)
T ss_dssp -CCEEEEEEES---------SCCHHHHHHHHHHHTTCSEEEEEEEESC
T ss_pred CCCcEEEEEEe---------CCcHHHHHHHHHHHcCCCCEEEEEEeCC
Confidence 45689998865 234567777777765 357887666543
No 310
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=33.57 E-value=1.6e+02 Score=25.51 Aligned_cols=112 Identities=9% Similarity=-0.000 Sum_probs=59.6
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc---CCc
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY---GAA 457 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~---G~p 457 (540)
.+++|+.+. +.....++.+.+.. ..+...... +.++....+ ...|++++=-. -+.-|+.+++.+.. .+|
T Consensus 6 ~~ilivdd~--~~~~~~l~~~L~~~--~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 6 ATILLIDDH--PMLRTGVKQLISMA--PDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp EEEEEECSC--HHHHHHHHHHHTTC--TTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred eEEEEECCC--HHHHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 456666643 34445555444432 123332222 322222222 24688777433 34457777776643 456
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+|+... ..-.+.+... ...|..||+..|.++++|.++|..++.
T Consensus 82 ii~ls~--~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 82 IVVFSV--SNHEEDVVTA-LKRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp EEEEEC--CCCHHHHHHH-HHTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred EEEEEC--CCCHHHHHHH-HHcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 666533 2222222111 114677899999999999999988764
No 311
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=33.30 E-value=51 Score=29.73 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=24.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 14 ~k~vlITG------as~gIG---~~ia~~l~~~G~~V~~~~r 46 (247)
T 3i1j_A 14 GRVILVTG------AARGIG---AAAARAYAAHGASVVLLGR 46 (247)
T ss_dssp TCEEEESS------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeC------CCChHH---HHHHHHHHHCCCEEEEEec
Confidence 35666764 357777 5778999999999887753
No 312
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=33.27 E-value=1.7e+02 Score=22.62 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=59.0
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEE-ecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc----CC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVD-SYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY----GA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~-~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~----G~ 456 (540)
.+++++.+. +.....++...+..+ ...... ..+.++....+ ...|++++=-. .+.-|+..++.+.. ..
T Consensus 3 ~~ilivdd~--~~~~~~l~~~l~~~~--~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ 78 (130)
T 1dz3_A 3 IKVCIADDN--RELVSLLDEYISSQP--DMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQP 78 (130)
T ss_dssp EEEEEECSC--HHHHHHHHHHHHTST--TEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCC
T ss_pred eEEEEEcCC--HHHHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCC
Confidence 356666643 445555665555432 222222 22333322333 24688877433 23456666666642 34
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
|+|+... .+-.+..... ...|..+|+..|.+.++|.++|..++.
T Consensus 79 ~ii~ls~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 79 NVIMLTA--FGQEDVTKKA-VELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp EEEEEEE--TTCHHHHHHH-HHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred cEEEEec--CCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 5555432 2222222110 114677899999999999999988764
No 313
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=33.22 E-value=3.8e+02 Score=26.72 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=32.6
Q ss_pred HhcCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCChHHHHHHH
Q 009217 452 LKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPLSWKRKIKDAMLQ--DFSWDADCNDI 529 (540)
Q Consensus 452 ma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~~~~~~~~~a~~~--~fsw~~~a~~~ 529 (540)
...|.|++...+| -++.++-.... .....-+...+|..+|.+.+.+.... +..+++.++-... .|+.+.+..++
T Consensus 262 ~~~g~Pi~fig~G-e~v~dL~~f~p--~~~~~~llg~gd~~~l~e~~~~~~~~-~~~~~~~~k~~~g~~~f~~~d~~~q~ 337 (433)
T 3kl4_A 262 VATGATIKFIGTG-EKIDELETFNA--KRFVSRILGMGDIESILEKVKGLEEY-DKIQKKMEDVMEGKGKLTLRDVYAQI 337 (433)
T ss_dssp HHHTCEEEEEECC-SSSSCEEECCH--HHHHHHHHCSSHHHHHHHHHHHC--------------------CCHHHHHHHH
T ss_pred HHHCCCEEEEECC-CChHhCccCCH--HHHHHHhcCCchHHHHHHHHHHhhhH-HHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 3469987655441 13333321111 11112344556667777777766532 3333444443443 79999988884
Q ss_pred HHHH
Q 009217 530 HISA 533 (540)
Q Consensus 530 y~~l 533 (540)
.++
T Consensus 338 -~~~ 340 (433)
T 3kl4_A 338 -IAL 340 (433)
T ss_dssp -HHH
T ss_pred -HHH
Confidence 543
No 314
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=33.19 E-value=38 Score=29.78 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=24.3
Q ss_pred ceEEEEEeccccccccccH-HHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSL-ASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~-~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
||||+|... |. .++. ...+..+.+.+ +.|++|+++-..
T Consensus 1 MkiLiI~gs--pr--~~s~t~~l~~~~~~~~-~~g~~v~~~dL~ 39 (196)
T 3lcm_A 1 MKILIVYTH--PN--PTSFNAEILKQVQTNL-SKEHTVSTLDLY 39 (196)
T ss_dssp CEEEEEECC--SC--TTSHHHHHHHHHHHHS-CTTSEEEEEETT
T ss_pred CEEEEEEeC--CC--CCChHHHHHHHHHHHh-cCCCeEEEEEcc
Confidence 899999874 53 2443 33344444455 579999988643
No 315
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=33.16 E-value=55 Score=30.82 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=28.4
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+.++|||+.|+ . - ..=|-.+.+.+|+.+|+++|..|.+|=.
T Consensus 36 ~~~~~~~vI~v~-~-K---GGvGKTT~a~nLA~~La~~G~~VlliD~ 77 (307)
T 3end_A 36 DKITGAKVFAVY-G-K---GGIGKSTTSSNLSAAFSILGKRVLQIGC 77 (307)
T ss_dssp ----CCEEEEEE-C-S---TTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cccCCceEEEEE-C-C---CCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345568888887 3 1 1124556778999999999999999853
No 316
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=33.13 E-value=32 Score=32.83 Aligned_cols=33 Identities=21% Similarity=0.002 Sum_probs=23.6
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+||+ +. .+|++| ..+++.|.++||+|.++..
T Consensus 3 ~~~vlV-tG------atG~iG---~~l~~~L~~~G~~V~~~~r 35 (345)
T 2z1m_A 3 GKRALI-TG------IRGQDG---AYLAKLLLEKGYEVYGADR 35 (345)
T ss_dssp CCEEEE-ET------TTSHHH---HHHHHHHHHTTCEEEEECS
T ss_pred CCEEEE-EC------CCChHH---HHHHHHHHHCCCEEEEEEC
Confidence 467764 32 246666 6678889999999998864
No 317
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=33.13 E-value=42 Score=31.09 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=25.4
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 27 ~~k~~lVTG------as~GIG---~aia~~la~~G~~V~~~~r 60 (270)
T 3ftp_A 27 DKQVAIVTG------ASRGIG---RAIALELARRGAMVIGTAT 60 (270)
T ss_dssp TTCEEEETT------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 346777764 357777 6788999999999977753
No 318
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=33.10 E-value=25 Score=33.74 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=24.9
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+...|||.+|.. |-+| ..+++.|.+.||+|+++-
T Consensus 28 ~~~~~~I~iIG~--------G~mG---~~~a~~l~~~G~~V~~~d 61 (320)
T 4dll_A 28 DPYARKITFLGT--------GSMG---LPMARRLCEAGYALQVWN 61 (320)
T ss_dssp -CCCSEEEEECC--------TTTH---HHHHHHHHHTTCEEEEEC
T ss_pred ccCCCEEEEECc--------cHHH---HHHHHHHHhCCCeEEEEc
Confidence 345689998843 4444 678888999999998774
No 319
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=33.08 E-value=34 Score=27.35 Aligned_cols=112 Identities=14% Similarity=0.003 Sum_probs=59.0
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCC-CC--CCchHHHHHHhc---CC
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSF-HD--PLLQVPLKALKY---GA 456 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~-~E--~fglv~lEAma~---G~ 456 (540)
.+++|+.+. +.....++.+.+..+ -+|. ..-+.++....+. ..|++++=.. -+ .-|+.+++.+.. .+
T Consensus 7 ~~ilivdd~--~~~~~~l~~~L~~~g-~~v~--~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3kto_A 7 PIIYLVDHQ--KDARAALSKLLSPLD-VTIQ--CFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHL 81 (136)
T ss_dssp CEEEEECSC--HHHHHHHHHHHTTSS-SEEE--EESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCC
T ss_pred CeEEEEcCC--HHHHHHHHHHHHHCC-cEEE--EeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCC
Confidence 466777643 344455555444332 2333 2223222222222 2466666433 33 456666666543 56
Q ss_pred ceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcC
Q 009217 457 APIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNN 504 (540)
Q Consensus 457 pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~ 504 (540)
|+|+... ..-.+..... ...|..+|+..|.+.++|.++|..+...
T Consensus 82 ~ii~~s~--~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 82 PTIVMAS--SSDIPTAVRA-MRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp CEEEEES--SCCHHHHHHH-HHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred CEEEEEc--CCCHHHHHHH-HHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 7777543 2222222110 1146778999999999999999988643
No 320
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=33.07 E-value=29 Score=31.11 Aligned_cols=31 Identities=6% Similarity=-0.141 Sum_probs=23.9
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.|||.+|. .|.+-..+++.|.+.||+|.++.
T Consensus 23 mmkI~IIG-----------~G~mG~~la~~l~~~g~~V~~v~ 53 (220)
T 4huj_A 23 MTTYAIIG-----------AGAIGSALAERFTAAQIPAIIAN 53 (220)
T ss_dssp SCCEEEEE-----------CHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEEC-----------CCHHHHHHHHHHHhCCCEEEEEE
Confidence 47898874 34555788999999999998854
No 321
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=33.05 E-value=42 Score=30.58 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=25.3
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|+++|+. ..||+| ..+++.|.++|++|.++...
T Consensus 22 ~k~vlITG------as~gIG---~~la~~l~~~G~~V~~~~r~ 55 (251)
T 3orf_A 22 SKNILVLG------GSGALG---AEVVKFFKSKSWNTISIDFR 55 (251)
T ss_dssp CCEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 35666764 357777 67889999999998887643
No 322
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=33.02 E-value=11 Score=34.42 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=25.2
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+.|||.+|... ..| ..|++.|.+.||+|.++..
T Consensus 4 ~~~mkI~IIG~G-----~~G------~sLA~~L~~~G~~V~~~~~ 37 (232)
T 3dfu_A 4 APRLRVGIFDDG-----SST------VNMAEKLDSVGHYVTVLHA 37 (232)
T ss_dssp CCCCEEEEECCS-----CCC------SCHHHHHHHTTCEEEECSS
T ss_pred CCCcEEEEEeeC-----HHH------HHHHHHHHHCCCEEEEecC
Confidence 456999988642 233 5789999999999887653
No 323
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=32.97 E-value=40 Score=26.78 Aligned_cols=69 Identities=13% Similarity=0.016 Sum_probs=39.3
Q ss_pred CCEEEECCC-CCCCchHHHHHHh---cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 432 SDIILCHSF-HDPLLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.|++++=.. -+.-|+.+++.+. ..+|+|+... ..-.+..... ...|..+|+..|.++++|..+|..++.
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~--~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSD--ELTSEQTRVL-VRMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEES--CCCHHHHHHH-HHTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeC--CCCHHHHHHH-HHcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 577666322 2233444444443 3677777543 2222222110 114677899999999999999988764
No 324
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=32.96 E-value=21 Score=33.38 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=24.1
Q ss_pred CCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+.++|+||+.. .+|++| ..|++.|.++||+|.++..
T Consensus 8 ~~~~~~~vlVtG-------atG~iG---~~l~~~L~~~g~~V~~~~r 44 (292)
T 1vl0_A 8 HHHHHMKILITG-------ANGQLG---REIQKQLKGKNVEVIPTDV 44 (292)
T ss_dssp ----CEEEEEES-------TTSHHH---HHHHHHHTTSSEEEEEECT
T ss_pred cccccceEEEEC-------CCChHH---HHHHHHHHhCCCeEEeccC
Confidence 345678888542 245555 6678889999999988764
No 325
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=32.70 E-value=3.2e+02 Score=25.74 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=79.4
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecC--hHHHHHHH-hcC
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYD--DALLHLIF-SGS 432 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~--~~~~~~~~-~~a 432 (540)
+.++.+..-.+.|.++.|+++++.-. ..+.+-..|.|...++. .+.+.+..+.+ +... .|. .+...+++ -..
T Consensus 112 ~~~lvv~~ds~~~sl~dL~~~ak~~p-~~~~~g~~g~Gs~~hl~--~~~l~~~~Gi~-~~~V-py~G~~~a~~aL~~G~V 186 (312)
T 2f5x_A 112 PMTIIARGDFPPNNIKELAEYVKKNA-DKISLANAGIGAASHLC--GTMLVEALGVN-LLTI-PYKGTAPAMNDLLGKQV 186 (312)
T ss_dssp EEEEEECTTCSCCSHHHHHHHHHHHG-GGCEEEESSTTSHHHHH--HHHHHHHHTCC-CEEE-ECSSHHHHHHHHHTTSS
T ss_pred cEEEEEeCCCCCCCHHHHHHHHHhCC-CceEEeCCCCCcHHHHH--HHHHHHHHCCC-eEEe-ccCChHHHHHHHHcCCc
Confidence 56666777778898888888766422 13444444433222222 23334444432 1112 232 23333444 357
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCc-eEEEec--CCCcccccee--c----cCCccccceeecCCCCH----HHHHHHHH
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAA-PIAVTS--SDIEFRHFAE--F----DHESTRFSRFISSTFGN----ISLSQALE 499 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~p-vI~~~~--~~gg~~e~v~--~----~~~~~g~~G~l~~~~d~----~~la~ai~ 499 (540)
|+++... -+.++....|.. +++... ....++++-. + +.....+.|+.++.+.+ +.|.+++.
T Consensus 187 D~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~ 260 (312)
T 2f5x_A 187 DLMCDQT------TNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQ 260 (312)
T ss_dssp CEEEEEH------HHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred cEEEech------HHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHH
Confidence 8887653 134555666763 333211 0011222210 0 00112355778776644 46777888
Q ss_pred HHhcCHHHHHHHHHHHHhccC
Q 009217 500 EIKNNPLSWKRKIKDAMLQDF 520 (540)
Q Consensus 500 ~l~~~~~~~~~~~~~a~~~~f 520 (540)
++++||+..+.+.+.+..-.+
T Consensus 261 ~~~~~p~~~~~~~~~g~~~~~ 281 (312)
T 2f5x_A 261 AGLADPKFQERMKQLGAEVLT 281 (312)
T ss_dssp HHHTCHHHHHHHHHTTCEECG
T ss_pred HHHcCHHHHHHHHHCCCcccC
Confidence 888999999888877765333
No 326
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=32.63 E-value=40 Score=30.79 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=24.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p 98 (540)
+|.++|+. ..||+| ..+++.|.+ +|++|.++..
T Consensus 4 ~k~vlITG------asggIG---~~~a~~L~~~~g~~V~~~~r 37 (276)
T 1wma_A 4 IHVALVTG------GNKGIG---LAIVRDLCRLFSGDVVLTAR 37 (276)
T ss_dssp CCEEEESS------CSSHHH---HHHHHHHHHHSSSEEEEEES
T ss_pred CCEEEEeC------CCcHHH---HHHHHHHHHhcCCeEEEEeC
Confidence 45566664 357777 567888999 9999988764
No 327
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=32.56 E-value=56 Score=29.87 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 10 k~vlVTG------as~giG---~~ia~~l~~~G~~V~~~~r 41 (260)
T 2ae2_A 10 CTALVTG------GSRGIG---YGIVEELASLGASVYTCSR 41 (260)
T ss_dssp CEEEEES------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357887 5678899999999987753
No 328
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=32.52 E-value=35 Score=31.15 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=20.9
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
++|++| ..+++++.++|++|+++..
T Consensus 27 SSG~mG---~aiA~~~~~~Ga~V~lv~~ 51 (232)
T 2gk4_A 27 STGHLG---KIITETLLSAGYEVCLITT 51 (232)
T ss_dssp CCCHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 357777 6789999999999999974
No 329
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=32.45 E-value=39 Score=32.24 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=25.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+|+|| |+. ..||+| ..+++.|.++||+|.++...
T Consensus 4 ~~~~vl-VTG------atG~iG---~~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 4 TKGTIL-VTG------GAGYIG---SHTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp SSCEEE-EET------TTSHHH---HHHHHHHHHTTCEEEEECCC
T ss_pred CCcEEE-Eec------CCcHHH---HHHHHHHHHCCCcEEEEecC
Confidence 346776 443 357777 56788999999999888643
No 330
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=32.41 E-value=52 Score=30.33 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=25.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 21 ~k~~lVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 53 (267)
T 1vl8_A 21 GRVALVTG------GSRGLG---FGIAQGLAEAGCSVVVASR 53 (267)
T ss_dssp TCEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 36666764 357777 6788899999999988764
No 331
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=32.40 E-value=42 Score=30.69 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 15 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 46 (260)
T 2zat_A 15 KVALVTA------STDGIG---LAIARRLAQDGAHVVVSSR 46 (260)
T ss_dssp CEEEESS------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357777 5678899999999988753
No 332
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=32.31 E-value=49 Score=30.75 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=26.3
Q ss_pred hhHHHHHHhccCCCCCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 39 ADLLAELRRFGSGSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
..++....+....+...+ |+++|+. ..||+| ..+++.|+++|++|.++.
T Consensus 12 ~~~~~~~~~~~~~~~l~~-k~vlVTG------as~gIG---~aia~~L~~~G~~V~~~~ 60 (276)
T 2b4q_A 12 SGLVPRGSHMHPYFSLAG-RIALVTG------GSRGIG---QMIAQGLLEAGARVFICA 60 (276)
T ss_dssp ---------CCTTTCCTT-CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEC
T ss_pred CCccccccccccccCCCC-CEEEEeC------CCChHH---HHHHHHHHHCCCEEEEEe
Confidence 334444433333332222 5666764 357777 568889999999988775
No 333
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Probab=32.26 E-value=38 Score=32.64 Aligned_cols=34 Identities=24% Similarity=0.048 Sum_probs=24.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|+||+. . ..|++| ..|++.|.++||+|.++...
T Consensus 9 ~~~vlVt-G------atG~iG---~~l~~~L~~~g~~V~~~~r~ 42 (357)
T 1rkx_A 9 GKRVFVT-G------HTGFKG---GWLSLWLQTMGATVKGYSLT 42 (357)
T ss_dssp TCEEEEE-T------TTSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEE-C------CCchHH---HHHHHHHHhCCCeEEEEeCC
Confidence 4677743 2 246666 66778899999999988743
No 334
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=32.24 E-value=29 Score=33.26 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=24.6
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|||++|. .|.+| ..++..|++.||+|+++...
T Consensus 2 ~mkI~IiG--------aGaiG---~~~a~~L~~~g~~V~~~~r~ 34 (320)
T 3i83_A 2 SLNILVIG--------TGAIG---SFYGALLAKTGHCVSVVSRS 34 (320)
T ss_dssp -CEEEEES--------CCHHH---HHHHHHHHHTTCEEEEECST
T ss_pred CCEEEEEC--------cCHHH---HHHHHHHHhCCCeEEEEeCC
Confidence 38999884 36666 45667788899999998753
No 335
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=32.17 E-value=36 Score=31.67 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=25.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 27 ~~k~~lVTG------as~GIG---~aia~~la~~G~~V~~~~r 60 (272)
T 4dyv_A 27 GKKIAIVTG------AGSGVG---RAVAVALAGAGYGVALAGR 60 (272)
T ss_dssp -CCEEEETT------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEEC
Confidence 346777764 357777 6788999999999887753
No 336
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=32.16 E-value=1.5e+02 Score=25.23 Aligned_cols=109 Identities=13% Similarity=0.017 Sum_probs=58.6
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCCCCC-CchHHHHHHh---cCCceE
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSFHDP-LLQVPLKALK---YGAAPI 459 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~~E~-fglv~lEAma---~G~pvI 459 (540)
+.+++|+.+. +.....+....+..+ -.|.....-.+.. -...|++++=-.... -|+ +.+.+. ..+|+|
T Consensus 12 ~~~iLivdd~--~~~~~~l~~~L~~~g-~~v~~~~~~~~al----~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 12 ELQVLVLNPP--GEVSDALVLQLIRIG-CSVRQCWPPPEAF----DVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GCEEEEESCT--THHHHHHHHHHHHHT-CEEEEECSCCSSC----SSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred CCeEEEEcCC--hhHHHHHHHHHHHcC-CeEEEecCchhhC----CCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 5678888754 344555655555543 2443221111211 134688877543322 255 445444 457777
Q ss_pred EEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 460 AVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 460 ~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
+... .+-.+.+... ...|..+|+..|.+++.|..+|...+.
T Consensus 84 ~lt~--~~~~~~~~~a-~~~ga~~~l~KP~~~~~L~~~l~~~~~ 124 (196)
T 1qo0_D 84 ALVE--YESPAVLSQI-IELECHGVITQPLDAHRVLPVLVSARR 124 (196)
T ss_dssp EEEC--CCSHHHHHHH-HHHTCSEEEESSCCGGGHHHHHHHHHH
T ss_pred EEEc--CCChHHHHHH-HHcCCCeeEecCcCHHHHHHHHHHHHH
Confidence 6533 2223332211 114677899999999888888876654
No 337
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=32.09 E-value=59 Score=30.38 Aligned_cols=41 Identities=10% Similarity=-0.090 Sum_probs=26.3
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
++++||.|++ +|... ...+..+...++++|++|+|++-..+
T Consensus 6 ~~~rvLvv~a--HPDDe----~lg~GGtia~~~~~G~~V~vv~~T~G 46 (273)
T 3dff_A 6 GATRLLAISP--HLDDA----VLSFGAGLAQAAQDGANVLVYTVFAG 46 (273)
T ss_dssp --CEEEEEES--STTHH----HHHHHHHHHHHHHTTCEEEEEETTCC
T ss_pred CCCCEEEEEe--CCChH----HHhHHHHHHHHHHCCCcEEEEEEeCC
Confidence 4689999998 46532 22334444556778999999985443
No 338
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=32.06 E-value=1.1e+02 Score=29.94 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=31.5
Q ss_pred CCCCCceEEEEEecccccccccc--HHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 52 SKKNGFHIIHICTEMDPLVSIGS--LASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 52 ~~~~~mkIl~i~~e~~P~~~~GG--~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
...++|||+.|++. .|| -.+.+.+||.+|+++|..|.++=..
T Consensus 138 ~~~~~~kvIav~s~------KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 138 GENDKSSVVIFTSP------CGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CCTTSCEEEEEECS------STTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ccCCCceEEEEECC------CCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 34567899888762 354 4567788999999999999988643
No 339
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=31.94 E-value=48 Score=30.98 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=25.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++|+. ..||+| ..+++.|+++|+.|.++..
T Consensus 28 ~k~~lVTG------as~GIG---~aia~~la~~G~~V~~~~r 60 (283)
T 3v8b_A 28 SPVALITG------AGSGIG---RATALALAADGVTVGALGR 60 (283)
T ss_dssp CCEEEEES------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 46777775 357887 6788999999999988763
No 340
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=31.93 E-value=52 Score=30.02 Aligned_cols=33 Identities=6% Similarity=-0.012 Sum_probs=25.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 7 ~k~vlVTG------as~GIG---~aia~~l~~~G~~V~~~~r 39 (252)
T 3h7a_A 7 NATVAVIG------AGDYIG---AEIAKKFAAEGFTVFAGRR 39 (252)
T ss_dssp SCEEEEEC------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 35666765 357887 6788999999999887764
No 341
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=31.89 E-value=31 Score=32.49 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=18.5
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|++| ..+++.|.++||+|.++..
T Consensus 9 tG~iG---~~l~~~L~~~G~~V~~~~r 32 (311)
T 2p5y_A 9 AGFIG---SHIVEDLLARGLEVAVLDN 32 (311)
T ss_dssp TSHHH---HHHHHHHHTTTCEEEEECC
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEEC
Confidence 46666 6678889999999988753
No 342
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=31.62 E-value=37 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=18.9
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|++| ..|++.|.++||+|.++..
T Consensus 11 tG~iG---~~l~~~L~~~g~~V~~~~r 34 (348)
T 1ek6_A 11 AGYIG---SHTVLELLEAGYLPVVIDN 34 (348)
T ss_dssp TSHHH---HHHHHHHHHTTCCEEEEEC
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEec
Confidence 46666 6678889999999998864
No 343
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=31.61 E-value=55 Score=30.74 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=25.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
-|+++||. ..||+| ..+++.|+++|+.|.++..
T Consensus 28 gk~~lVTG------as~GIG---~aia~~la~~G~~V~~~~~ 60 (299)
T 3t7c_A 28 GKVAFITG------AARGQG---RSHAITLAREGADIIAIDV 60 (299)
T ss_dssp TCEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEec
Confidence 46777875 357777 5788999999999988754
No 344
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=31.34 E-value=39 Score=31.10 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=24.0
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 27 k~vlVTG------as~gIG---~~la~~l~~~G~~v~i~~~ 58 (267)
T 4iiu_A 27 RSVLVTG------ASKGIG---RAIARQLAADGFNIGVHYH 58 (267)
T ss_dssp CEEEETT------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 5566664 357776 6888999999999987764
No 345
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=31.25 E-value=56 Score=30.17 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=23.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 33 k~vlVTG------asggIG---~~la~~l~~~G~~V~~~~r 64 (279)
T 1xg5_A 33 RLALVTG------ASGGIG---AAVARALVQQGLKVVGCAR 64 (279)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEEC
Confidence 5666664 357777 5778889999999988763
No 346
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=31.24 E-value=40 Score=32.08 Aligned_cols=32 Identities=25% Similarity=0.102 Sum_probs=24.0
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|||++|.. |.+|. .++..|+ .||+|+++...
T Consensus 2 ~mkI~IiGa--------Ga~G~---~~a~~L~-~g~~V~~~~r~ 33 (307)
T 3ego_A 2 SLKIGIIGG--------GSVGL---LCAYYLS-LYHDVTVVTRR 33 (307)
T ss_dssp CCEEEEECC--------SHHHH---HHHHHHH-TTSEEEEECSC
T ss_pred CCEEEEECC--------CHHHH---HHHHHHh-cCCceEEEECC
Confidence 489998853 77775 4566678 89999998753
No 347
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=31.17 E-value=33 Score=31.96 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=23.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||.+|.. |.+| ..++..|.+.||+|+++..
T Consensus 1 m~i~iiG~--------G~~G---~~~a~~l~~~g~~V~~~~r 31 (291)
T 1ks9_A 1 MKITVLGC--------GALG---QLWLTALCKQGHEVQGWLR 31 (291)
T ss_dssp CEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECS
T ss_pred CeEEEECc--------CHHH---HHHHHHHHhCCCCEEEEEc
Confidence 68887742 4444 5778889999999998864
No 348
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=31.16 E-value=29 Score=30.48 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=24.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCC--eEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH--LVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh--~V~vi~p 98 (540)
++|+|+++. .+|++| ..+++.|.++|+ +|.++..
T Consensus 4 ~~~~vlVtG-------atG~iG---~~l~~~l~~~g~~~~V~~~~r 39 (215)
T 2a35_A 4 TPKRVLLAG-------ATGLTG---EHLLDRILSEPTLAKVIAPAR 39 (215)
T ss_dssp CCCEEEEEC-------TTSHHH---HHHHHHHHHCTTCCEEECCBS
T ss_pred CCceEEEEC-------CCcHHH---HHHHHHHHhCCCCCeEEEEeC
Confidence 357877543 246666 677888999998 8887764
No 349
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=31.15 E-value=40 Score=32.40 Aligned_cols=34 Identities=12% Similarity=-0.054 Sum_probs=23.8
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|+||+ +. .+|++| ..|++.|.++||+|.++...
T Consensus 27 ~~~vlV-tG------atG~iG---~~l~~~L~~~g~~V~~~~r~ 60 (352)
T 1sb8_A 27 PKVWLI-TG------VAGFIG---SNLLETLLKLDQKVVGLDNF 60 (352)
T ss_dssp CCEEEE-ET------TTSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCeEEE-EC------CCcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 367764 42 246666 66788899999999988753
No 350
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=30.98 E-value=3.4e+02 Score=25.56 Aligned_cols=151 Identities=10% Similarity=0.034 Sum_probs=77.1
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCC--cEEEEEecChHHHHHHH-hcC
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDG--IVIFVDSYDDALLHLIF-SGS 432 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~--~v~f~~~~~~~~~~~~~-~~a 432 (540)
+.++.+..-.+.|.++.|+++++.=. ..+.+-..|.|...++. .+.+.+..+.+ .|.+. +..+. ...++ ...
T Consensus 116 ~~~lvv~~ds~~~tl~dL~~~ak~~p-~~~~~g~~g~Gs~~hl~--~~~l~~~~Gi~~~~Vpy~-G~~~a-~~al~~G~v 190 (314)
T 2dvz_A 116 ANVVAVNPKFPAKDFKGFLEELKKNP-GKYSYGSSGTCGVLHLM--GESFKMATGTDIVHVPYK-GSGPA-VADAVGGQI 190 (314)
T ss_dssp CEEEEECTTSSCSSHHHHHHHHHTST-TTCEEEESCTTSHHHHH--HHHHHHHHTCCCEEEECS-SHHHH-HHHHHHTSS
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHhCC-CcEEEeCCCCCcHHHHH--HHHHHHHhCCCeEEcccC-CHHHH-HHHHHcCCc
Confidence 55666777778888888777654211 12444443333222222 23334444432 33221 11233 33444 458
Q ss_pred CEEEECCCCCCCchHHHHHHhcCCc-eEEEec--CCCccccceec---c---CCccccceeecCCCCH----HHHHHHHH
Q 009217 433 DIILCHSFHDPLLQVPLKALKYGAA-PIAVTS--SDIEFRHFAEF---D---HESTRFSRFISSTFGN----ISLSQALE 499 (540)
Q Consensus 433 Di~v~PS~~E~fglv~lEAma~G~p-vI~~~~--~~gg~~e~v~~---~---~~~~g~~G~l~~~~d~----~~la~ai~ 499 (540)
|+++... -+.++....|.. +++... ....++|+-.- + .....+.|+..+.+.+ +.|.+++.
T Consensus 191 D~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~ 264 (314)
T 2dvz_A 191 ELIFDNL------PSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAV 264 (314)
T ss_dssp SEEEEEH------HHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred eEEEEcH------HHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHH
Confidence 8888753 134555666753 333221 01122222100 0 0112355777777654 46777788
Q ss_pred HHhcCHHHHHHHHHHHHh
Q 009217 500 EIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 500 ~l~~~~~~~~~~~~~a~~ 517 (540)
++++||+..+.+.+.+..
T Consensus 265 ~~~~~p~~~~~~~~~g~~ 282 (314)
T 2dvz_A 265 VALKDPKVIKALDDQGSA 282 (314)
T ss_dssp HHHTCHHHHHHHHHHTEE
T ss_pred HHHcCHHHHHHHHHCCCc
Confidence 888999999888877765
No 351
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=30.96 E-value=59 Score=29.77 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 39 (260)
T 1nff_A 8 KVALVSG------GARGMG---ASHVRAMVAEGAKVVFGDI 39 (260)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357887 5678899999999988753
No 352
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=30.65 E-value=33 Score=33.28 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=24.2
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~p~ 99 (540)
++|+||+ +. .+|.+| ..|++.|.++ ||+|+++...
T Consensus 23 ~~~~vlV-tG------atG~iG---~~l~~~L~~~~g~~V~~~~r~ 58 (372)
T 3slg_A 23 KAKKVLI-LG------VNGFIG---HHLSKRILETTDWEVFGMDMQ 58 (372)
T ss_dssp CCCEEEE-ES------CSSHHH---HHHHHHHHHHSSCEEEEEESC
T ss_pred CCCEEEE-EC------CCChHH---HHHHHHHHhCCCCEEEEEeCC
Confidence 3467764 32 246665 6778889888 9999998754
No 353
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A
Probab=30.60 E-value=45 Score=29.89 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=24.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCC--eEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH--LVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh--~V~vi~p~ 99 (540)
+|+|++ +. ..||+| ..+++.|.++|+ +|.++...
T Consensus 18 ~~~vlV-tG------asg~iG---~~l~~~L~~~G~~~~V~~~~r~ 53 (242)
T 2bka_A 18 NKSVFI-LG------ASGETG---RVLLKEILEQGLFSKVTLIGRR 53 (242)
T ss_dssp CCEEEE-EC------TTSHHH---HHHHHHHHHHTCCSEEEEEESS
T ss_pred CCeEEE-EC------CCcHHH---HHHHHHHHcCCCCCEEEEEEcC
Confidence 456664 43 357777 567888999999 99988754
No 354
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=30.55 E-value=55 Score=29.38 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCceEEEEEecccccccccc--HHHHHhHHHHHHHHc-CCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGS--LASYVTGLSGALQRK-GHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG--~~~~v~~L~~~L~~~-Gh~V~vi~p 98 (540)
++|||+.|++. .|| -.+.+.+|+.+|+++ |+.|.+|=.
T Consensus 2 ~~~~vI~v~s~------kGGvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 2 NAKRVFGFVSA------KGGDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp -CCEEEEEEES------STTSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CCCeEEEEECC------CCCcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 35788888763 244 456778899999998 999998854
No 355
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=30.54 E-value=41 Score=31.94 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=24.4
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
...|||.+|.. | .+-..+++.|.+.||+|+++-
T Consensus 7 ~~~~~IgiIG~--------G---~mG~~~A~~l~~~G~~V~~~d 39 (306)
T 3l6d_A 7 SFEFDVSVIGL--------G---AMGTIMAQVLLKQGKRVAIWN 39 (306)
T ss_dssp CCSCSEEEECC--------S---HHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCeEEEECC--------C---HHHHHHHHHHHHCCCEEEEEe
Confidence 34678988742 3 444678899999999998764
No 356
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=30.49 E-value=63 Score=29.92 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=24.1
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 23 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 54 (277)
T 2rhc_B 23 EVALVTG------ATSGIG---LEIARRLGKEGLRVFVCAR 54 (277)
T ss_dssp CEEEEET------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 5666764 357887 5678899999999988753
No 357
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=30.46 E-value=32 Score=32.79 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=23.5
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|||++|.. |.+|. .++..|++.||+|+++...
T Consensus 2 ~mkI~IiGa--------GaiG~---~~a~~L~~~g~~V~~~~r~ 34 (312)
T 3hn2_A 2 SLRIAIVGA--------GALGL---YYGALLQRSGEDVHFLLRR 34 (312)
T ss_dssp --CEEEECC--------STTHH---HHHHHHHHTSCCEEEECST
T ss_pred CCEEEEECc--------CHHHH---HHHHHHHHCCCeEEEEEcC
Confidence 378998853 66664 4567788899999998753
No 358
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=30.37 E-value=1.4e+02 Score=26.08 Aligned_cols=113 Identities=8% Similarity=-0.035 Sum_probs=60.7
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEe-cChH-HHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc----
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDS-YDDA-LLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY---- 454 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~-~~~~-~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~---- 454 (540)
..+++|+.+. +.....++.+.+... .+..... .+.. ....++ ...|++++=-. -+.-|+.+++.+..
T Consensus 7 ~~~IlivdD~--~~~~~~l~~~L~~~~--~~~v~~~~~~~~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 7 KLNVRMLSDV--CMQSRLLKEALESKL--PLALEITPFSELWLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCP 82 (225)
T ss_dssp SEEEEEESCC--SHHHHHHHHHHHHHS--SEEEEEECGGGHHHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCT
T ss_pred ceEEEEEcCc--HHHHHHHHHHHhhCC--CceEEEEeCCcHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCC
Confidence 3567777754 345566666555432 2332222 2222 111111 23587776432 23446666665543
Q ss_pred CCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 455 GAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 455 G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.+|+|+... ..-.+..... ...|..||+..|.++++|..+|..++.
T Consensus 83 ~~~ii~lt~--~~~~~~~~~~-~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 83 DAKEVIINC--PQDIEHKLLF-KWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp TCEEEEEEE--CTTCCHHHHT-TSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCcEEEEEC--CcchhHHHHH-HHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 677776533 2222222111 125778899999999999999998865
No 359
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=30.34 E-value=3.2e+02 Score=26.98 Aligned_cols=113 Identities=14% Similarity=0.036 Sum_probs=61.4
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHhc-----CCc
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALKY-----GAA 457 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma~-----G~p 457 (540)
+++|+.+. +.....++.+.+..+ -.|.. .-+..+....+ ...|++++=-. -+.-|+.+++.+.. .+|
T Consensus 3 ~iLivdD~--~~~~~~l~~~L~~~~-~~v~~--a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~p 77 (459)
T 1w25_A 3 RILVVDDI--EANVRLLEAKLTAEY-YEVST--AMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIP 77 (459)
T ss_dssp EEEEECSS--TTHHHHHHHHHHHTT-CEEEE--ESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred eEEEEeCC--HHHHHHHHHHHHHcC-CEEEE--ECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCC
Confidence 45666643 335555555554432 23332 22322222222 23687776433 24457777777653 467
Q ss_pred eEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCHH
Q 009217 458 PIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNPL 506 (540)
Q Consensus 458 vI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~~ 506 (540)
+|+... .+-.+..... ...|..+|+..|.+++.|..+|..++....
T Consensus 78 ii~lt~--~~~~~~~~~a-~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (459)
T 1w25_A 78 VVLITA--LDGRGDRIQG-LESGASDFLTKPIDDVMLFARVRSLTRFKL 123 (459)
T ss_dssp EEEEEC--SSCHHHHHHH-HHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEC--CCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 776532 2222222110 114677899999999999999988865433
No 360
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=30.33 E-value=38 Score=30.53 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=25.9
Q ss_pred ceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||++ +. .||+| +.+.+|+.+|+++|+.|.+|=.
T Consensus 1 mkI~v-s~-------kGGvGKTt~a~~LA~~la~~g~~VlliD~ 36 (254)
T 3kjh_A 1 MKLAV-AG-------KGGVGKTTVAAGLIKIMASDYDKIYAVDG 36 (254)
T ss_dssp CEEEE-EC-------SSSHHHHHHHHHHHHHHTTTCSCEEEEEE
T ss_pred CEEEE-ec-------CCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78886 53 36665 5567889999999999988854
No 361
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=30.28 E-value=43 Score=32.79 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=23.5
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHH-HcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQ-RKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~-~~Gh~V~vi~p 98 (540)
+|+||+. . ..|++| ..|++.|. ++||+|.++..
T Consensus 2 ~m~vlVT-G------atG~iG---~~l~~~L~~~~g~~V~~~~r 35 (397)
T 1gy8_A 2 HMRVLVC-G------GAGYIG---SHFVRALLRDTNHSVVIVDS 35 (397)
T ss_dssp CCEEEEE-T------TTSHHH---HHHHHHHHHHCCCEEEEEEC
T ss_pred CCEEEEE-C------CCCHHH---HHHHHHHHHhCCCEEEEEec
Confidence 4777643 2 246666 56778888 99999998864
No 362
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=30.27 E-value=60 Score=29.67 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=24.4
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 9 k~~lVTG------as~gIG---~a~a~~l~~~G~~V~~~~r 40 (255)
T 4eso_A 9 KKAIVIG------GTHGMG---LATVRRLVEGGAEVLLTGR 40 (255)
T ss_dssp CEEEEET------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 5666764 357887 5788999999999987753
No 363
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=30.20 E-value=34 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=23.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..|||.+|. .|.+| ..+++.|.+.||+|.++..
T Consensus 27 ~~~~I~iiG--------~G~~G---~~la~~l~~~g~~V~~~~r 59 (215)
T 2vns_A 27 EAPKVGILG--------SGDFA---RSLATRLVGSGFKVVVGSR 59 (215)
T ss_dssp --CCEEEEC--------CSHHH---HHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEEc--------cCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 458998874 25554 5678889999999987654
No 364
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=30.11 E-value=46 Score=29.89 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=24.2
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+++|+. ..||+| ..+++.|.++|++|.++...
T Consensus 4 k~vlITG------as~gIG---~~~a~~l~~~G~~V~~~~r~ 36 (236)
T 1ooe_A 4 GKVIVYG------GKGALG---SAILEFFKKNGYTVLNIDLS 36 (236)
T ss_dssp EEEEEET------TTSHHH---HHHHHHHHHTTEEEEEEESS
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEecC
Confidence 4555664 357777 67888999999999887643
No 365
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=30.10 E-value=79 Score=28.99 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=27.9
Q ss_pred CceEEEEEeccccc-----cccccHHHHHhHHHHHHHHcCCeEEEEeecCC
Q 009217 56 GFHIIHICTEMDPL-----VSIGSLASYVTGLSGALQRKGHLVEVILPKYA 101 (540)
Q Consensus 56 ~mkIl~i~~e~~P~-----~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~~ 101 (540)
.+|||+|.+...-. ..+|=-..=+..-...|.+.|++|++++|...
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~ 59 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGT 59 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35899998763210 11232222233344678899999999998643
No 366
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=30.08 E-value=68 Score=28.11 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=26.6
Q ss_pred ceEEEEEecccccccccc-HHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG-~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+||++..+ || ...+...|.+.|.+.|++|+|+...
T Consensus 2 k~IllgvT--------Gs~aa~k~~~l~~~L~~~g~~V~vv~T~ 37 (189)
T 2ejb_A 2 QKIALCIT--------GASGVIYGIKLLQVLEELDFSVDLVISR 37 (189)
T ss_dssp CEEEEEEC--------SSTTHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CEEEEEEE--------CHHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 37776654 33 2457889999999999999999754
No 367
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=30.03 E-value=51 Score=30.44 Aligned_cols=33 Identities=9% Similarity=0.257 Sum_probs=25.4
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 16 ~k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~r 48 (266)
T 3p19_A 16 KKLVVITG------ASSGIG---EAIARRFSEEGHPLLLLAR 48 (266)
T ss_dssp CCEEEEES------TTSHHH---HHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEEC
Confidence 36777775 357887 5788999999999988764
No 368
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=30.02 E-value=84 Score=30.15 Aligned_cols=75 Identities=7% Similarity=0.052 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCCCCCCchHHHH
Q 009217 373 LKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSFHDPLLQVPLK 450 (540)
Q Consensus 373 Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~~E~fglv~lE 450 (540)
.+.++... ++++++-+.+. + .+..++++++++..++ |++ ..++++ ..|++++.+-...-.-..++
T Consensus 39 ~~~~~~~~--~~~~lvav~d~-~---~~~a~~~a~~~g~~~~-----y~d--~~ell~~~~iDaV~I~tP~~~H~~~~~~ 105 (350)
T 4had_A 39 VVPAIQDA--ENCVVTAIASR-D---LTRAREMADRFSVPHA-----FGS--YEEMLASDVIDAVYIPLPTSQHIEWSIK 105 (350)
T ss_dssp HHHHHHHC--SSEEEEEEECS-S---HHHHHHHHHHHTCSEE-----ESS--HHHHHHCSSCSEEEECSCGGGHHHHHHH
T ss_pred HHHHHHhC--CCeEEEEEECC-C---HHHHHHHHHHcCCCee-----eCC--HHHHhcCCCCCEEEEeCCCchhHHHHHH
Confidence 44555433 47787766633 2 3456778888863332 222 234554 46999998875555556789
Q ss_pred HHhcCCceEE
Q 009217 451 ALKYGAAPIA 460 (540)
Q Consensus 451 Ama~G~pvI~ 460 (540)
|+..|++|++
T Consensus 106 al~aGkhVl~ 115 (350)
T 4had_A 106 AADAGKHVVC 115 (350)
T ss_dssp HHHTTCEEEE
T ss_pred HHhcCCEEEE
Confidence 9999997766
No 369
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=30.01 E-value=38 Score=32.28 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=18.4
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.|++| ..+++.|.++||+|.++.
T Consensus 9 tG~iG---~~l~~~L~~~G~~V~~~~ 31 (338)
T 1udb_A 9 SGYIG---SHTCVQLLQNGHDVIILD 31 (338)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEE
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEe
Confidence 46666 567888999999998875
No 370
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=29.87 E-value=54 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=25.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 25 ~k~~lVTG------as~GIG---~~ia~~la~~G~~V~~~~r 57 (281)
T 3v2h_A 25 TKTAVITG------STSGIG---LAIARTLAKAGANIVLNGF 57 (281)
T ss_dssp TCEEEEET------CSSHHH---HHHHHHHHHTTCEEEEECC
T ss_pred CCEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 46777775 357887 5788999999999887653
No 371
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=29.60 E-value=57 Score=29.84 Aligned_cols=32 Identities=9% Similarity=0.083 Sum_probs=24.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 9 k~vlVTG------as~GIG---~aia~~la~~G~~V~~~~~ 40 (259)
T 3edm_A 9 RTIVVAG------AGRDIG---RACAIRFAQEGANVVLTYN 40 (259)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEcC
Confidence 5666765 357777 5788999999999988753
No 372
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=29.53 E-value=26 Score=33.23 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=19.5
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|++| ..++++|.++||+|.+++..
T Consensus 20 tG~iG---~~l~~~L~~~g~~V~~l~R~ 44 (318)
T 2r6j_A 20 TGYIG---NHMVKGSLKLGHPTYVFTRP 44 (318)
T ss_dssp TSTTH---HHHHHHHHHTTCCEEEEECT
T ss_pred CchHH---HHHHHHHHHCCCcEEEEECC
Confidence 46666 56778899999999988754
No 373
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis}
Probab=29.51 E-value=61 Score=28.13 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=22.7
Q ss_pred CCCCCCceEEEEEeccccccccccHHHHHhHHHHHHH-HcCCeEEEEee
Q 009217 51 GSKKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQ-RKGHLVEVILP 98 (540)
Q Consensus 51 ~~~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~-~~Gh~V~vi~p 98 (540)
.+.+.+||||+||..= =.=..+...+.+.+. ..|.++.|-+.
T Consensus 29 ~m~~~~mkVLFVC~GN------iCRSpmAE~l~r~~~~~~g~~~~v~SA 71 (180)
T 4egs_A 29 QMGRGSMRVLFVCTGN------TCRSPMAEGIFNAKSKALGKDWEAKSA 71 (180)
T ss_dssp -----CCEEEEEESSS------SSHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCC------cccCHHHHHHHHHHHHhcCCceEEEEe
Confidence 3556789999999741 123444555555543 45766666654
No 374
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=29.49 E-value=25 Score=30.75 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=23.3
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+|||++|... |. ..|-...++..+++.+. .|++|+++-.
T Consensus 5 ~~Mkilii~gS--~r-~~g~t~~la~~i~~~l~-~g~~v~~~dl 44 (193)
T 1rtt_A 5 DDIKVLGISGS--LR-SGSYNSAALQEAIGLVP-PGMSIELADI 44 (193)
T ss_dssp --CEEEEEESC--CS-TTCHHHHHHHHHHTTCC-TTCEEEECCC
T ss_pred CCceEEEEECC--CC-CCChHHHHHHHHHHhcc-CCCeEEEEeH
Confidence 45899999864 43 12334444444555555 5889988753
No 375
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=29.46 E-value=38 Score=33.21 Aligned_cols=25 Identities=16% Similarity=-0.031 Sum_probs=19.8
Q ss_pred ccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 73 GSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 73 GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
||.|..=..|++.|.++||+|.++.
T Consensus 18 G~tGfIG~~l~~~L~~~G~~V~~~~ 42 (404)
T 1i24_A 18 GGDGYCGWATALHLSKKNYEVCIVD 42 (404)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHhCCCeEEEEE
Confidence 5555555778899999999999885
No 376
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=29.41 E-value=54 Score=26.19 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=29.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcC--CeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG--HLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G--h~V~vi~p~ 99 (540)
||+++|...-.|. -...++..+|....++| |+|.|+.-.
T Consensus 8 ~K~~ivi~s~d~~----~~~~~al~~A~~a~~~G~~~eV~i~~~G 48 (117)
T 2fb6_A 8 DKLTILWTTDNKD----TVFNMLAMYALNSKNRGWWKHINIILWG 48 (117)
T ss_dssp SEEEEEECCCCHH----HHHHTHHHHHHHHHHHTSCSEEEEEECS
T ss_pred CeEEEEEEcCChH----HHHHHHHHHHHHHHHcCCCCcEEEEEEC
Confidence 8999998764332 12246888899999999 899999843
No 377
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=29.37 E-value=2e+02 Score=22.39 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=60.4
Q ss_pred CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh---cCCEEEECCC-CCCCchHHHHHHhc---CC
Q 009217 384 GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS---GSDIILCHSF-HDPLLQVPLKALKY---GA 456 (540)
Q Consensus 384 ~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~---~aDi~v~PS~-~E~fglv~lEAma~---G~ 456 (540)
..+++++.+. +.....++...+..+ -+|.. .-+.++....+. ..|++++=.. .+.-|+.+++.+.. .+
T Consensus 15 ~~~ilivdd~--~~~~~~l~~~L~~~g-~~v~~--~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~ 89 (138)
T 2b4a_A 15 PFRVTLVEDE--PSHATLIQYHLNQLG-AEVTV--HPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQP 89 (138)
T ss_dssp CCEEEEECSC--HHHHHHHHHHHHHTT-CEEEE--ESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCC
T ss_pred CCeEEEECCC--HHHHHHHHHHHHHcC-CEEEE--eCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCC
Confidence 5677777643 344555555555443 23332 223333223332 3688777543 34457777777753 56
Q ss_pred ceEEEe-cCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 457 APIAVT-SSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 457 pvI~~~-~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
|+|+.. . ..-.+. .. .- ..+|+..|.+.++|..+|..++...
T Consensus 90 ~ii~ls~~--~~~~~~-~~---~~-~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 90 SVLILTTG--RHELIE-SS---EH-NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp EEEEEESC--C--CCC-CS---SS-CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CEEEEECC--CCCHHH-HH---HH-HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 666653 2 121222 11 11 4468999999999999999876543
No 378
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=29.34 E-value=3.7e+02 Score=25.50 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=52.6
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC---ChhHHHHHHHHHHHhCCCcEEEEE
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK---LPSASRALVSFQEELKDGIVIFVD 418 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~---~~~~~~~l~~l~~~~~~~~v~f~~ 418 (540)
.+++++|--. ...+.++|-...- .+.++.++..+ ++++.+++... ++.+.+.+++.+++.+ ..+.+.
T Consensus 145 Ti~e~~g~l~---gl~va~vGD~~rv--a~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g-~~~~~~- 214 (315)
T 1pvv_A 145 TIWEKKGTIK---GVKVVYVGDGNNV--AHSLMIAGTKL---GADVVVATPEGYEPDEKVIKWAEQNAAESG-GSFELL- 214 (315)
T ss_dssp HHHHHHSCCT---TCEEEEESCCCHH--HHHHHHHHHHT---TCEEEEECCTTCCCCHHHHHHHHHHHHHHT-CEEEEE-
T ss_pred HHHHHhCCcC---CcEEEEECCCcch--HHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcC-CeEEEE-
Confidence 4566776322 3568899987322 44566665544 89999999532 2234445566666665 456543
Q ss_pred ecChHHHHHHHhcCCEEEECCC
Q 009217 419 SYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
.+ ..+.+..||++....+
T Consensus 215 -~d---~~eav~~aDvvy~~~w 232 (315)
T 1pvv_A 215 -HD---PVKAVKDADVIYTDVW 232 (315)
T ss_dssp -SC---HHHHTTTCSEEEECCC
T ss_pred -eC---HHHHhCCCCEEEEcce
Confidence 22 2356799999999765
No 379
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=29.32 E-value=31 Score=32.58 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=24.8
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|||++|.. |++|. .++..|++.||+|+++...
T Consensus 2 ~mkI~iiGa--------Ga~G~---~~a~~L~~~g~~V~~~~r~ 34 (294)
T 3g17_A 2 SLSVAIIGP--------GAVGT---TIAYELQQSLPHTTLIGRH 34 (294)
T ss_dssp -CCEEEECC--------SHHHH---HHHHHHHHHCTTCEEEESS
T ss_pred CcEEEEECC--------CHHHH---HHHHHHHHCCCeEEEEEec
Confidence 389998853 66664 5677788899999999754
No 380
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=29.30 E-value=44 Score=30.96 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=24.6
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|+++||. ..||+| ..+++.|.++|++|.++..
T Consensus 5 ~k~vlVTG------as~gIG---~~~a~~l~~~G~~V~~~~r 37 (281)
T 3m1a_A 5 AKVWLVTG------ASSGFG---RAIAEAAVAAGDTVIGTAR 37 (281)
T ss_dssp CCEEEETT------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 46666764 357777 5788899999999987764
No 381
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=29.26 E-value=63 Score=29.27 Aligned_cols=32 Identities=6% Similarity=0.121 Sum_probs=23.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 8 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 39 (249)
T 2ew8_A 8 KLAVITG------GANGIG---RAIAERFAVEGADIAIADL 39 (249)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEcC
Confidence 4555664 357777 5788899999999988754
No 382
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=29.09 E-value=33 Score=32.78 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=23.5
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCC-eEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH-LVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh-~V~vi~p 98 (540)
...|||.+|.. | .+-..+++.|.+.|| +|+++-.
T Consensus 22 ~~~~~I~iIG~--------G---~mG~~~A~~L~~~G~~~V~~~dr 56 (312)
T 3qsg_A 22 SNAMKLGFIGF--------G---EAASAIASGLRQAGAIDMAAYDA 56 (312)
T ss_dssp ---CEEEEECC--------S---HHHHHHHHHHHHHSCCEEEEECS
T ss_pred CCCCEEEEECc--------c---HHHHHHHHHHHHCCCCeEEEEcC
Confidence 34589998842 3 344688899999999 8887754
No 383
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=29.06 E-value=43 Score=30.56 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=24.4
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+...|||.+|.. |.+ -..|++.|.+.||+|++...
T Consensus 16 ~~~~~kIgiIG~--------G~m---G~alA~~L~~~G~~V~~~~r 50 (245)
T 3dtt_A 16 YFQGMKIAVLGT--------GTV---GRTMAGALADLGHEVTIGTR 50 (245)
T ss_dssp ---CCEEEEECC--------SHH---HHHHHHHHHHTTCEEEEEES
T ss_pred ccCCCeEEEECC--------CHH---HHHHHHHHHHCCCEEEEEeC
Confidence 345689998842 444 46788999999999988754
No 384
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=28.99 E-value=69 Score=27.49 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=24.9
Q ss_pred CCCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 53 KKNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
..++|||.+-+.+ +|.+ +=..|.+.|.++||+|.=+.+
T Consensus 17 ~~~~MkIaIgsDh-------aG~~-lK~~i~~~L~~~G~eV~D~G~ 54 (169)
T 3ph3_A 17 RGSHMKIGIGSDH-------GGYN-LKREIADFLKKRGYEVIDFGT 54 (169)
T ss_dssp ----CEEEEEECG-------GGHH-HHHHHHHHHHHTTCEEEECCC
T ss_pred cCCCCEEEEEeCc-------hHHH-HHHHHHHHHHHCCCEEEEcCC
Confidence 3556999977653 4543 456788889999999975544
No 385
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=28.93 E-value=75 Score=28.45 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=19.0
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 16 sggiG---~~~a~~l~~~G~~V~~~~r 39 (244)
T 3d3w_A 16 GKGIG---RGTVQALHATGARVVAVSR 39 (244)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 57777 6677889999999987753
No 386
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=28.91 E-value=57 Score=29.39 Aligned_cols=32 Identities=6% Similarity=0.091 Sum_probs=23.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 3 k~vlItG------asggiG---~~~a~~l~~~G~~V~~~~r 34 (250)
T 2cfc_A 3 RVAIVTG------ASSGNG---LAIATRFLARGDRVAALDL 34 (250)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555654 357777 5678899999999888764
No 387
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=28.75 E-value=68 Score=29.03 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=23.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~~lVTG------as~gIG---~aia~~l~~~G~~V~~~~r 39 (247)
T 2jah_A 8 KVALITG------ASSGIG---EATARALAAEGAAVAIAAR 39 (247)
T ss_dssp CEEEEES------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEEC
Confidence 4566664 357887 5688999999999987753
No 388
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=28.69 E-value=43 Score=32.62 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.5
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|++| ..|++.|.++||+|.++...
T Consensus 37 tG~IG---~~l~~~L~~~g~~V~~~~r~ 61 (381)
T 1n7h_A 37 TGQDG---SYLTEFLLGKGYEVHGLIRR 61 (381)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CchHH---HHHHHHHHHCCCEEEEEecC
Confidence 46666 66788899999999988743
No 389
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=28.64 E-value=29 Score=32.86 Aligned_cols=34 Identities=15% Similarity=-0.047 Sum_probs=24.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|+|+++. .+|++| ..++++|.++||+|.+++..
T Consensus 4 ~~~ilVtG-------atG~iG---~~l~~~L~~~g~~V~~~~R~ 37 (321)
T 3c1o_A 4 MEKIIIYG-------GTGYIG---KFMVRASLSFSHPTFIYARP 37 (321)
T ss_dssp CCCEEEET-------TTSTTH---HHHHHHHHHTTCCEEEEECC
T ss_pred ccEEEEEc-------CCchhH---HHHHHHHHhCCCcEEEEECC
Confidence 35676442 247776 56778899999999998754
No 390
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=28.62 E-value=67 Score=29.70 Aligned_cols=32 Identities=6% Similarity=0.042 Sum_probs=24.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 11 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~~ 42 (287)
T 3pxx_A 11 KVVLVTG------GARGQG---RSHAVKLAEEGADIILFDI 42 (287)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeC------CCChHH---HHHHHHHHHCCCeEEEEcc
Confidence 5666775 357777 6788999999999988764
No 391
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=28.60 E-value=58 Score=29.84 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 30 k~vlITG------as~gIG---~~la~~l~~~G~~V~~~~r 61 (262)
T 3rkr_A 30 QVAVVTG------ASRGIG---AAIARKLGSLGARVVLTAR 61 (262)
T ss_dssp CEEEESS------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEEC
Confidence 5666764 357777 6778999999999877753
No 392
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=28.55 E-value=28 Score=32.92 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=22.3
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+|+||+.. .+|++| ..|++.|.++||+|.++.
T Consensus 3 ~~~ilVtG-------atG~iG---~~l~~~L~~~g~~v~~~~ 34 (321)
T 1e6u_A 3 KQRVFIAG-------HRGMVG---SAIRRQLEQRGDVELVLR 34 (321)
T ss_dssp CEEEEEET-------TTSHHH---HHHHHHHTTCTTEEEECC
T ss_pred CCEEEEEC-------CCcHHH---HHHHHHHHhCCCeEEEEe
Confidence 47777432 235555 667888999999988764
No 393
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=28.52 E-value=1e+02 Score=30.12 Aligned_cols=57 Identities=9% Similarity=-0.137 Sum_probs=38.3
Q ss_pred HHHHhcCCceEEEecCCCccccceeccCCccccceeec-CCCCHHHHHHHHHHHhcCHHHHHHHHH
Q 009217 449 LKALKYGAAPIAVTSSDIEFRHFAEFDHESTRFSRFIS-STFGNISLSQALEEIKNNPLSWKRKIK 513 (540)
Q Consensus 449 lEAma~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~-~~~d~~~la~ai~~l~~~~~~~~~~~~ 513 (540)
..|+.+|+.||+--. ..+.+.+.. .+-+.+ +-.++++|++-|..+.+|++.+.+.-.
T Consensus 252 ~~al~~g~VPI~~G~--~~~~~~~Pp------~SfI~~~dF~s~~~La~yL~~L~~n~~~Y~~y~~ 309 (371)
T 2nzw_A 252 IDAYFSHTIPIYWGS--PSVAKDFNP------KSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLY 309 (371)
T ss_dssp HHHHHTTCEEEEESC--TTGGGTSCG------GGSEEGGGSSSHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCCeEEEEECC--CchhhhCCC------CceEEcccCCCHHHHHHHHHHHhcCHHHHHHHHh
Confidence 479999999999521 222233321 122334 345789999999999999998887653
No 394
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=28.52 E-value=51 Score=31.28 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=23.8
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCC--eEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGH--LVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh--~V~vi~p 98 (540)
.++|||++|.. |.+|.. ++..|+..|| +|+++..
T Consensus 5 ~~~mkI~IiGa--------G~vG~~---~a~~l~~~g~~~~V~l~d~ 40 (319)
T 1lld_A 5 VKPTKLAVIGA--------GAVGST---LAFAAAQRGIAREIVLEDI 40 (319)
T ss_dssp --CCEEEEECC--------SHHHHH---HHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEEECC--------CHHHHH---HHHHHHhCCCCCEEEEEeC
Confidence 34589998843 556544 6778889999 9988754
No 395
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=28.45 E-value=45 Score=32.34 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=24.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|+|++.. .+|++| ..+++.|.++||+|.++...
T Consensus 5 ~~~ilVtG-------atG~iG---~~l~~~L~~~g~~V~~~~R~ 38 (352)
T 1xgk_A 5 KKTIAVVG-------ATGRQG---ASLIRVAAAVGHHVRAQVHS 38 (352)
T ss_dssp CCCEEEES-------TTSHHH---HHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEEC-------CCCHHH---HHHHHHHHhCCCEEEEEECC
Confidence 56777542 246666 56778888899999988743
No 396
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=28.44 E-value=92 Score=27.19 Aligned_cols=109 Identities=8% Similarity=-0.020 Sum_probs=59.7
Q ss_pred EEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEECCC-CCCCchHHHHHHh---cCCceEEE
Q 009217 386 QFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILCHSF-HDPLLQVPLKALK---YGAAPIAV 461 (540)
Q Consensus 386 ~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~ 461 (540)
+++|+.+. +...+.++...+.. +.|. ...+.++....+...|++++=-. .+.-|+.+++.+. ..+|+|+.
T Consensus 4 ~ilivdd~--~~~~~~l~~~L~~~--~~v~--~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 4 KIAVVDDD--KNILKKVSEKLQQL--GRVK--TFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEECSC--HHHHHHHHHHHTTT--EEEE--EESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred eEEEEeCC--HHHHHHHHHHHHhC--CCEE--EECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 56666643 44455555544433 2332 22233322222256788887433 3445777766654 46777775
Q ss_pred ecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 462 TSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 462 ~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.. ..-.+.+... ...|..||+..|.++++|.++|..++.
T Consensus 78 t~--~~~~~~~~~~-~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 78 TL--LSDDESVLKG-FEAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp ES--CCSHHHHHHH-HHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred Ec--CCCHHHHHHH-HHcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 43 2222222110 014677899999999999999987753
No 397
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=28.44 E-value=81 Score=28.32 Aligned_cols=42 Identities=10% Similarity=-0.022 Sum_probs=26.4
Q ss_pred CceEEEEEeccccccccccHH-HHHhHHHHHHHHc--CC-eEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLA-SYVTGLSGALQRK--GH-LVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~-~~v~~L~~~L~~~--Gh-~V~vi~p 98 (540)
.||||+|...-.|. ..+|.. ..+..+.+.+.++ |+ +|+++-.
T Consensus 4 MmkIL~I~gSpr~~-~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL 49 (223)
T 3u7i_A 4 MNKTLIINAHPKVD-DTSSVSIKVFKHFLESYKELISNNETIEQINL 49 (223)
T ss_dssp CCEEEEEECCTTTT-CTTSHHHHHHHHHHHHHHHHCCSSCEEEEEET
T ss_pred cCEEEEEEeCCCCC-CCCChHHHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 48999998852211 134544 3445566677765 58 9998854
No 398
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=28.34 E-value=70 Score=29.26 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 39 (267)
T 2gdz_A 8 KVALVTG------AAQGIG---RAFAEALLLKGAKVALVDW 39 (267)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCcHH---HHHHHHHHHCCCEEEEEEC
Confidence 4555664 357777 5678899999999988753
No 399
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=28.32 E-value=67 Score=29.41 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=23.8
Q ss_pred eEEEEEecccccccc--ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSI--GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~--GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. .. ||+| ..+++.|.++|++|.++..
T Consensus 10 k~vlVTG------as~~~gIG---~~ia~~l~~~G~~V~~~~r 43 (265)
T 1qsg_A 10 KRILVTG------VASKLSIA---YGIAQAMHREGAELAFTYQ 43 (265)
T ss_dssp CEEEECC------CCSTTSHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCCCCHH---HHHHHHHHHCCCEEEEEcC
Confidence 4556664 34 7888 5678899999999988764
No 400
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=28.26 E-value=77 Score=28.77 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=25.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
-|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 12 ~k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~r 44 (252)
T 3f1l_A 12 DRIILVTG------ASDGIG---REAAMTYARYGATVILLGR 44 (252)
T ss_dssp TCEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeC------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 36777775 357887 5788999999999887753
No 401
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=28.23 E-value=3.9e+02 Score=25.26 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=52.5
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC---ChhHHHHHHHHHHHhCCCcEEEEE
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK---LPSASRALVSFQEELKDGIVIFVD 418 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~---~~~~~~~l~~l~~~~~~~~v~f~~ 418 (540)
.+++++|--. ...+.++|-. ..-=.+.++.++..+ ++++.+++... ++...+.+++.+++.+ ..+.+.
T Consensus 138 Ti~e~~g~l~---gl~va~vGD~-~~rva~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G-~~~~~~- 208 (307)
T 2i6u_A 138 TIAERKGALR---GLRLSYFGDG-ANNMAHSLLLGGVTA---GIHVTVAAPEGFLPDPSVRAAAERRAQDTG-ASVTVT- 208 (307)
T ss_dssp HHHHHHSCCT---TCEEEEESCT-TSHHHHHHHHHHHHT---TCEEEEECCTTSCCCHHHHHHHHHHHHHHT-CCEEEE-
T ss_pred HHHHHhCCcC---CeEEEEECCC-CcCcHHHHHHHHHHC---CCEEEEECCccccCCHHHHHHHHHHHHHcC-CeEEEE-
Confidence 4566776322 3568899986 222244555555544 89999999542 1234445566666665 466544
Q ss_pred ecChHHHHHHHhcCCEEEECCC
Q 009217 419 SYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
.+ ..+.+..||++....+
T Consensus 209 -~d---~~eav~~aDvvy~~~w 226 (307)
T 2i6u_A 209 -AD---AHAAAAGADVLVTDTW 226 (307)
T ss_dssp -SC---HHHHHTTCSEEEECCS
T ss_pred -EC---HHHHhcCCCEEEecce
Confidence 12 2356899999999655
No 402
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=28.18 E-value=56 Score=30.04 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=23.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 9 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 40 (264)
T 2dtx_A 9 KVVIVTG------ASMGIG---RAIAERFVDEGSKVIDLSI 40 (264)
T ss_dssp CEEEEES------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEec
Confidence 4555664 357887 5678999999999988754
No 403
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=28.11 E-value=69 Score=29.08 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=23.4
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 20 k~vlVTG------as~gIG---~~~a~~l~~~G~~V~~~~r 51 (249)
T 1o5i_A 20 KGVLVLA------ASRGIG---RAVADVLSQEGAEVTICAR 51 (249)
T ss_dssp CEEEEES------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEcC
Confidence 4455664 357887 5678899999999988753
No 404
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=28.00 E-value=57 Score=30.29 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=24.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 24 ~k~~lVTG------as~GIG---~aia~~la~~G~~V~~~~r 56 (279)
T 3sju_A 24 PQTAFVTG------VSSGIG---LAVARTLAARGIAVYGCAR 56 (279)
T ss_dssp -CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 36777775 357777 6688899999999877653
No 405
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=28.00 E-value=46 Score=31.05 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+++||. ..||+| ..+++.|+++|++|.++.
T Consensus 9 k~vlVTG------as~GIG---~aia~~la~~G~~V~~~~ 39 (280)
T 3tox_A 9 KIAIVTG------ASSGIG---RAAALLFAREGAKVVVTA 39 (280)
T ss_dssp CEEEESS------TTSHHH---HHHHHHHHHTTCEEEECC
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEE
Confidence 5666764 357777 578899999999987664
No 406
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=27.99 E-value=68 Score=29.33 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 39 (262)
T 1zem_A 8 KVCLVTG------AGGNIG---LATALRLAEEGTAIALLDM 39 (262)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357777 5688899999999988753
No 407
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=27.92 E-value=68 Score=29.57 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=25.5
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|+++||. ..||+| ..+++.|+++|++|.++...
T Consensus 11 ~k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~r~ 44 (271)
T 3tzq_B 11 NKVAIITG------ACGGIG---LETSRVLARAGARVVLADLP 44 (271)
T ss_dssp TCEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CCEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEcCC
Confidence 36677775 357777 57889999999999877643
No 408
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=27.87 E-value=70 Score=29.34 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=23.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 7 k~vlITG------as~gIG---~aia~~l~~~G~~V~~~~r 38 (263)
T 2a4k_A 7 KTILVTG------AASGIG---RAALDLFAREGASLVAVDR 38 (263)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357887 5688899999999988753
No 409
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=27.70 E-value=42 Score=31.96 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=18.8
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|++| ..|++.|.++||+|.++..
T Consensus 10 tG~iG---~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 10 CGFLG---SNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CchhH---HHHHHHHHhCCCEEEEEeC
Confidence 46666 6678889999999998863
No 410
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=27.70 E-value=46 Score=31.53 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=18.9
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+|++| ..|++.|.++||+|.++..
T Consensus 10 tG~iG---~~l~~~L~~~g~~V~~~~r 33 (330)
T 2c20_A 10 AGYIG---SHAVKKLVDEGLSVVVVDN 33 (330)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CcHHH---HHHHHHHHhCCCEEEEEeC
Confidence 45555 6778889999999998864
No 411
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=27.70 E-value=60 Score=29.44 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=23.4
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 14 k~vlItG------asggiG---~~la~~l~~~G~~V~~~~r 45 (260)
T 3awd_A 14 RVAIVTG------GAQNIG---LACVTALAEAGARVIIADL 45 (260)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555654 357777 6788899999999988764
No 412
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=27.69 E-value=36 Score=30.44 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=26.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHH-cCCeEEEEeecC
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQR-KGHLVEVILPKY 100 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~-~Gh~V~vi~p~~ 100 (540)
..++||++..+. |.......+|.+.|.+ .|++|+|+....
T Consensus 17 l~~k~IllgvTG-------siaa~k~~~lv~~L~~~~g~~V~vv~T~~ 57 (206)
T 1qzu_A 17 ERKFHVLVGVTG-------SVAALKLPLLVSKLLDIPGLEVAVVTTER 57 (206)
T ss_dssp CSSEEEEEEECS-------SGGGGTHHHHHHHHC---CEEEEEEECTG
T ss_pred cCCCEEEEEEeC-------hHHHHHHHHHHHHHhcccCCEEEEEECHh
Confidence 345688877652 2223456789999998 899999998643
No 413
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=27.63 E-value=71 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=26.4
Q ss_pred ceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+.|+. .||+| +.+.+|+.+|+++|+.|.+|=.
T Consensus 1 M~vI~vs~-------KGGvGKTT~a~nLA~~la~~G~~VlliD~ 37 (269)
T 1cp2_A 1 MRQVAIYG-------KGGIGKSTTTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp CEEEEEEE-------CTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CcEEEEec-------CCCCcHHHHHHHHHHHHHHCCCcEEEEcC
Confidence 67877742 25544 6677999999999999988843
No 414
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=27.62 E-value=1.4e+02 Score=25.98 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=33.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhC
Q 009217 358 VGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELK 410 (540)
Q Consensus 358 v~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~ 410 (540)
++..+-+. -+...+.++++.+.+.++++.++|-|.+..-.+ ++.+++..+
T Consensus 111 il~~~~~~--~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n 160 (192)
T 2x5n_A 111 AFVGSPIV--EDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAAN 160 (192)
T ss_dssp EEECSCCS--SCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHC
T ss_pred EEEECCCC--CCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhcc
Confidence 33334442 235578888888888899999998775422225 999998864
No 415
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*
Probab=27.52 E-value=41 Score=32.75 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcC-CeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G-h~V~vi~p~ 99 (540)
++|+||+ +. .+|++| ..|++.|.++| ++|.++...
T Consensus 31 ~~~~ilV-tG------atG~iG---~~l~~~L~~~g~~~V~~~~r~ 66 (377)
T 2q1s_A 31 ANTNVMV-VG------GAGFVG---SNLVKRLLELGVNQVHVVDNL 66 (377)
T ss_dssp TTCEEEE-ET------TTSHHH---HHHHHHHHHTTCSEEEEECCC
T ss_pred CCCEEEE-EC------CccHHH---HHHHHHHHHcCCceEEEEECC
Confidence 4567764 32 246665 67788899999 999988643
No 416
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=27.51 E-value=79 Score=28.81 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=24.0
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 39 (260)
T 2z1n_A 8 KLAVVTA------GSSGLG---FASALELARNGARLLLFSR 39 (260)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 5566664 357777 6788899999999987753
No 417
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=27.41 E-value=76 Score=29.08 Aligned_cols=33 Identities=9% Similarity=0.023 Sum_probs=24.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++||. ..||+| ..+++.|+++|+.|.++..
T Consensus 8 ~k~~lVTG------as~GIG---~aia~~l~~~G~~V~~~~r 40 (265)
T 3lf2_A 8 EAVAVVTG------GSSGIG---LATVELLLEAGAAVAFCAR 40 (265)
T ss_dssp TCEEEEET------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeC------CCChHH---HHHHHHHHHCCCEEEEEeC
Confidence 36777775 357777 6778999999999887753
No 418
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=27.37 E-value=47 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHHcCCeEEEEee
Q 009217 77 SYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 77 ~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+-..+++.|.+.|++|.++..
T Consensus 16 ~iG~~~a~~l~~~g~~v~~~d~ 37 (144)
T 2hmt_A 16 RFGGSIVKELHRMGHEVLAVDI 37 (144)
T ss_dssp HHHHHHHHHHHHTTCCCEEEES
T ss_pred HHHHHHHHHHHHCCCEEEEEeC
Confidence 3345678889999999988864
No 419
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=27.36 E-value=66 Score=28.86 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=19.2
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 16 sggiG---~~la~~l~~~G~~V~~~~r 39 (248)
T 2pnf_A 16 TRGIG---RAIAEKLASAGSTVIITGT 39 (248)
T ss_dssp SSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CchHH---HHHHHHHHHCCCEEEEEeC
Confidence 57776 6678889999999988764
No 420
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}
Probab=27.35 E-value=37 Score=30.82 Aligned_cols=30 Identities=17% Similarity=0.045 Sum_probs=22.7
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEE
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi 96 (540)
|+++|+. ..||+| ..+++.|.++|++|.++
T Consensus 2 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~ 31 (244)
T 1zmo_A 2 VIALVTH------ARHFAG---PAAVEALTQDGYTVVCH 31 (244)
T ss_dssp CEEEESS------TTSTTH---HHHHHHHHHTTCEEEEC
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHCCCEEEEe
Confidence 5566664 357777 56788999999998876
No 421
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=27.27 E-value=52 Score=30.76 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=25.1
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++||. ..||+| ..+++.|+++|+.|.++..
T Consensus 12 ~k~vlITG------as~GIG---~~~a~~L~~~G~~V~~~~r 44 (311)
T 3o26_A 12 RRCAVVTG------GNKGIG---FEICKQLSSNGIMVVLTCR 44 (311)
T ss_dssp CCEEEESS------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEec------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 35677765 357887 5788999999999888764
No 422
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=27.25 E-value=72 Score=28.97 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=24.2
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|.++|+. ..||+| ..+++.|.++|++|.++...
T Consensus 13 k~vlVTG------asggiG---~~~a~~l~~~G~~V~~~~r~ 45 (265)
T 2o23_A 13 LVAVITG------GASGLG---LATAERLVGQGASAVLLDLP 45 (265)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEECT
T ss_pred CEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4555664 357777 67888999999999887643
No 423
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=27.18 E-value=4.4e+02 Score=25.54 Aligned_cols=86 Identities=10% Similarity=0.155 Sum_probs=53.0
Q ss_pred HHHHHhCCCCCCCceEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEEecCC---ChhHHHHHHHHHHHhCCCcEEEEE
Q 009217 342 TLQQQLGLSKDASTIVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFTGTNK---LPSASRALVSFQEELKDGIVIFVD 418 (540)
Q Consensus 342 ~lr~~~gl~~~~~~~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~G~g~---~~~~~~~l~~l~~~~~~~~v~f~~ 418 (540)
.+++.+|--. ...+.++|-.. .-=.+.++.++..+ ++++.+++... ++.+.+.+++.+++.+ ..|.+.
T Consensus 166 Ti~E~~g~l~---gl~va~vGD~~-~rva~Sl~~~~~~l---G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G-~~v~~~- 236 (359)
T 2w37_A 166 TVKENFGKLQ---GLTLTFMGDGR-NNVANSLLVTGAIL---GVNIHIVAPKALFPTEETQNIAKGFAEKSG-AKLVIT- 236 (359)
T ss_dssp HHHHHHSCCT---TCEEEEESCTT-SHHHHHHHHHHHHH---TCEEEEECCGGGSCCHHHHHHHHHHHHHHT-CCEEEE-
T ss_pred HHHHHhCCcC---CeEEEEECCCc-cchHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHHHHHcC-CeEEEE-
Confidence 4566776322 35688999862 21234556665554 89999998532 2234455566666765 466654
Q ss_pred ecChHHHHHHHhcCCEEEECCC
Q 009217 419 SYDDALLHLIFSGSDIILCHSF 440 (540)
Q Consensus 419 ~~~~~~~~~~~~~aDi~v~PS~ 440 (540)
+...+.+..||++....+
T Consensus 237 ----~d~~eav~~aDvvytd~w 254 (359)
T 2w37_A 237 ----DDLDEGLKGSNVVYTDVW 254 (359)
T ss_dssp ----SCHHHHHTTCSEEEECCS
T ss_pred ----eCHHHHhcCCCEEEEccc
Confidence 122356899999998766
No 424
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=27.16 E-value=61 Score=29.48 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=24.4
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++||. ..||+| ..+++.|+++|+.|.++..
T Consensus 8 k~~lVTG------as~GIG---~aia~~l~~~G~~V~~~~r 39 (250)
T 3nyw_A 8 GLAIITG------ASQGIG---AVIAAGLATDGYRVVLIAR 39 (250)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHHTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEEC
Confidence 5666765 357887 6788999999999987753
No 425
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=27.09 E-value=72 Score=29.01 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 7 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 38 (256)
T 2d1y_A 7 KGVLVTG------GARGIG---RAIAQAFAREGALVALCDL 38 (256)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555664 357777 5678899999999987754
No 426
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=26.97 E-value=56 Score=30.45 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=23.5
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||.+|. . .|.+-..+++.|.+.||+|+++.+
T Consensus 11 mm~I~iIG--------~--tG~mG~~la~~l~~~g~~V~~~~r 43 (286)
T 3c24_A 11 PKTVAILG--------A--GGKMGARITRKIHDSAHHLAAIEI 43 (286)
T ss_dssp CCEEEEET--------T--TSHHHHHHHHHHHHSSSEEEEECC
T ss_pred CCEEEEEC--------C--CCHHHHHHHHHHHhCCCEEEEEEC
Confidence 36888772 1 145557788899999999987653
No 427
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=26.75 E-value=74 Score=28.94 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=25.0
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+++||. ..||+| ..+++.|+++|++|.++...
T Consensus 8 k~~lVTG------as~gIG---~aia~~l~~~G~~V~~~~r~ 40 (257)
T 3tpc_A 8 RVFIVTG------ASSGLG---AAVTRMLAQEGATVLGLDLK 40 (257)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5666765 357777 67889999999999887643
No 428
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=26.72 E-value=40 Score=32.49 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=24.7
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||++|.. |.+| ..++..|++.||+|+++..
T Consensus 3 ~mkI~IiGa--------G~~G---~~~a~~L~~~g~~V~~~~r 34 (335)
T 3ghy_A 3 LTRICIVGA--------GAVG---GYLGARLALAGEAINVLAR 34 (335)
T ss_dssp CCCEEEESC--------CHHH---HHHHHHHHHTTCCEEEECC
T ss_pred CCEEEEECc--------CHHH---HHHHHHHHHCCCEEEEEEC
Confidence 489998843 6665 4567788999999999875
No 429
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=32.69 E-value=14 Score=32.94 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=24.0
Q ss_pred CCCCceEEEEEecccccccccc-HHHHHhHHHHHHHHcCCeEEEE
Q 009217 53 KKNGFHIIHICTEMDPLVSIGS-LASYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 53 ~~~~mkIl~i~~e~~P~~~~GG-~~~~v~~L~~~L~~~Gh~V~vi 96 (540)
.+.+|||+.|+.. |. .+| ....+..+.+.+.+ |++|+++
T Consensus 3 ~~~~mkIliI~gS--~r--~~s~t~~la~~~~~~~~~-g~~v~~i 42 (199)
T 3s2y_A 3 TTSPLHFVTLLGS--LR--KASFNAAVARALPEIAPE-GIAITPL 42 (199)
Confidence 3567999999874 32 133 33344444455554 8999888
No 430
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.67 E-value=83 Score=30.00 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=28.7
Q ss_pred CCCceEEEEEeccccccccccHH--HHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLA--SYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~--~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.++|+++.+++. .||+| +.+.+|+.+|+++|+.|.++...
T Consensus 10 ~~gm~~i~v~sg------KGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 10 NKGKTTFVFIGG------KGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp BTTBCEEEEEEE------STTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEEeC------CCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 345666666652 35544 56778999999999999999754
No 431
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.64 E-value=58 Score=26.34 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=25.3
Q ss_pred ccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 71 SIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 71 ~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.+|....++..+++.|.+.|++|+++-..
T Consensus 8 ~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 36 (138)
T 5nul_A 8 GTGNTEKMAELIAKGIIESGKDVNTINVS 36 (138)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred CCchHHHHHHHHHHHHHHCCCeEEEEEhh
Confidence 36899999999999999999999988643
No 432
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=26.53 E-value=40 Score=29.41 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=26.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeecC
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
.||++..+. |.....+.+|.+.|.+.|++|+|+....
T Consensus 3 k~IllgvTG-------s~aa~k~~~l~~~L~~~g~~V~vv~T~~ 39 (181)
T 1g63_A 3 GKLLICATA-------SINVININHYIVELKQHFDEVNILFSPS 39 (181)
T ss_dssp CCEEEEECS-------CGGGGGHHHHHHHHTTTSSCEEEEECGG
T ss_pred CEEEEEEEC-------HHHHHHHHHHHHHHHHCCCEEEEEEchh
Confidence 367766542 2223367789999999999999998543
No 433
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=26.50 E-value=66 Score=29.12 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=23.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+++|+. ..||+| ..+++.|+++|++|.++.
T Consensus 3 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~ 33 (247)
T 3dii_A 3 RGVIVTG------GGHGIG---KQICLDFLEAGDKVCFID 33 (247)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEe
Confidence 5566664 357777 578899999999998875
No 434
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=26.44 E-value=38 Score=31.73 Aligned_cols=39 Identities=13% Similarity=-0.022 Sum_probs=27.1
Q ss_pred CceEEEEEeccccccccccHHH---HHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLAS---YVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~---~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|||+++.....+. -.. ....+++++.++||+|.++.+.
T Consensus 2 ~~~i~il~gg~s~e-----~~~s~~~~~~l~~al~~~G~~v~~~~~~ 43 (306)
T 1iow_A 2 TDKIAVLLGGTSAE-----REVSLNSGAAVLAGLREGGIDAYPVDPK 43 (306)
T ss_dssp CCEEEEECCCSSTT-----HHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcEEEEEeCCCCcc-----ceEcHHhHHHHHHHHHHCCCeEEEEecC
Confidence 47999887532111 112 3467999999999999998765
No 435
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=26.42 E-value=2.7e+02 Score=23.66 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=17.8
Q ss_pred cCCEEEECCCCCCCchHHHHHHhcCCceEEEec
Q 009217 431 GSDIILCHSFHDPLLQVPLKALKYGAAPIAVTS 463 (540)
Q Consensus 431 ~aDi~v~PS~~E~fglv~lEAma~G~pvI~~~~ 463 (540)
+++++|.-.-.|+ .|..+-|-..-.|||...+
T Consensus 58 g~~ViIa~AG~aa-~LpgvvA~~t~~PVIgVP~ 89 (163)
T 3ors_A 58 GINIIIAGAGGAA-HLPGMVASLTTLPVIGVPI 89 (163)
T ss_dssp TCCEEEEEEESSC-CHHHHHHHHCSSCEEEEEE
T ss_pred CCcEEEEECCchh-hhHHHHHhccCCCEEEeeC
Confidence 3566665544444 3444455556677776554
No 436
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=26.28 E-value=45 Score=32.18 Aligned_cols=32 Identities=16% Similarity=0.011 Sum_probs=23.6
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|||++|.. |.+| ..++..|.+.||+|+++..
T Consensus 4 ~mki~iiG~--------G~~G---~~~a~~L~~~g~~V~~~~r 35 (359)
T 1bg6_A 4 SKTYAVLGL--------GNGG---HAFAAYLALKGQSVLAWDI 35 (359)
T ss_dssp CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECS
T ss_pred cCeEEEECC--------CHHH---HHHHHHHHhCCCEEEEEeC
Confidence 489998742 5555 4567788899999988753
No 437
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}
Probab=26.24 E-value=48 Score=31.44 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.6
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcC--CeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG--HLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G--h~V~vi~p 98 (540)
.||||+ +. ..|++| ..|++.|.++| |+|.++..
T Consensus 3 ~m~vlV-TG------atG~iG---~~l~~~L~~~g~~~~V~~~~r 37 (336)
T 2hun_A 3 SMKLLV-TG------GMGFIG---SNFIRYILEKHPDWEVINIDK 37 (336)
T ss_dssp CCEEEE-ET------TTSHHH---HHHHHHHHHHCTTCEEEEEEC
T ss_pred CCeEEE-EC------CCchHH---HHHHHHHHHhCCCCEEEEEec
Confidence 478764 32 246666 56778888887 88887764
No 438
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=26.22 E-value=32 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.3
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|++| ..++++|.++||+|.+++..
T Consensus 11 tG~iG---~~l~~~L~~~g~~V~~~~R~ 35 (307)
T 2gas_A 11 TGAIG---RHIVWASIKAGNPTYALVRK 35 (307)
T ss_dssp TSTTH---HHHHHHHHHHTCCEEEEECC
T ss_pred CchHH---HHHHHHHHhCCCcEEEEECC
Confidence 47776 55678888999999988754
No 439
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=26.19 E-value=89 Score=28.46 Aligned_cols=32 Identities=9% Similarity=0.254 Sum_probs=23.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 39 (263)
T 3ai3_A 8 KVAVITG------SSSGIG---LAIAEGFAKEGAHIVLVAR 39 (263)
T ss_dssp CEEEEES------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEcC
Confidence 4555664 357777 5788899999999987753
No 440
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=26.15 E-value=46 Score=32.54 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=24.5
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
+.|||.+|. +|.+-..+++.|.+.||+|.++-.
T Consensus 21 ~~mkIgiIG-----------lG~mG~~~A~~L~~~G~~V~v~dr 53 (358)
T 4e21_A 21 QSMQIGMIG-----------LGRMGADMVRRLRKGGHECVVYDL 53 (358)
T ss_dssp -CCEEEEEC-----------CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCEEEEEC-----------chHHHHHHHHHHHhCCCEEEEEeC
Confidence 358998874 334457889999999999988753
No 441
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=26.10 E-value=45 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=24.1
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+++|+. ..||+| ..+++.|+++|++|.++...
T Consensus 28 k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~r~ 60 (260)
T 3gem_A 28 APILITG------ASQRVG---LHCALRLLEHGHRVIISYRT 60 (260)
T ss_dssp CCEEESS------TTSHHH---HHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 4555654 357777 67889999999999887643
No 442
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=26.09 E-value=36 Score=30.80 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
-.+++||+|. | |.+....++.|.+.|.+|+|+.|.
T Consensus 29 L~gk~VLVVG----------g-G~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 29 LKGRSVLVVG----------G-GTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp CTTCCEEEEC----------C-SHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCEEEEEC----------C-CHHHHHHHHHHHHCCCEEEEECCC
Confidence 4456677652 2 467788889999999999999985
No 443
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=25.92 E-value=61 Score=29.72 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=25.1
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+++||. ..||+| ..+++.|+++|++|.++...
T Consensus 29 k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~r~ 61 (260)
T 3un1_A 29 KVVVITG------ASQGIG---AGLVRAYRDRNYRVVATSRS 61 (260)
T ss_dssp CEEEESS------CSSHHH---HHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5666764 357787 57889999999999887643
No 444
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=25.88 E-value=45 Score=31.81 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=22.7
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEE
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVI 96 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi 96 (540)
..|||++|.. |.+| ..++..|++.||+|+++
T Consensus 18 ~~~kI~IiGa--------Ga~G---~~~a~~L~~~G~~V~l~ 48 (318)
T 3hwr_A 18 QGMKVAIMGA--------GAVG---CYYGGMLARAGHEVILI 48 (318)
T ss_dssp --CEEEEESC--------SHHH---HHHHHHHHHTTCEEEEE
T ss_pred cCCcEEEECc--------CHHH---HHHHHHHHHCCCeEEEE
Confidence 4588998743 6565 55677889999999988
No 445
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=25.81 E-value=60 Score=28.97 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=19.4
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 11 sggiG---~~la~~l~~~G~~V~~~~r 34 (242)
T 1uay_A 11 ASGLG---RAAALALKARGYRVVVLDL 34 (242)
T ss_dssp TSHHH---HHHHHHHHHHTCEEEEEES
T ss_pred CChHH---HHHHHHHHHCCCEEEEEcc
Confidence 57776 6778899999999988764
No 446
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=25.78 E-value=68 Score=28.87 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=19.2
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 15 sggiG---~~~a~~l~~~G~~V~~~~r 38 (251)
T 1zk4_A 15 TLGIG---LAIATKFVEEGAKVMITGR 38 (251)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CChHH---HHHHHHHHHCCCEEEEEeC
Confidence 46766 6788999999999888763
No 447
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=25.78 E-value=71 Score=29.85 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=28.0
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|||++++....+. .... .....+++++.++||+|.++.+.
T Consensus 2 m~i~il~~~~~~~-~~~~--~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANI-NIKK--DSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGC-CTTT--CHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhC-CcCC--ChHHHHHHHHHHCCCEEEEEchh
Confidence 6999998653322 1111 23467999999999999999764
No 448
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=25.68 E-value=1.2e+02 Score=23.86 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=28.3
Q ss_pred CceEEEEEeccccccccccHHHHH--hHHHHHHHHcCCeEEEEeecC
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYV--TGLSGALQRKGHLVEVILPKY 100 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v--~~L~~~L~~~Gh~V~vi~p~~ 100 (540)
.|||+.|+.- | +|=..+|+ ..|-++-.++||++.|=+-..
T Consensus 2 ~mkivaVtaC--p---tGiAhTymAAeaLekaA~~~G~~ikVEtqgs 43 (106)
T 2m1z_A 2 KRKIIAVTAC--A---TGVAHTYMAAQALKKGAKKMGNLIKVETQGA 43 (106)
T ss_dssp CCEEEEEEEC--S---SCHHHHHHHHHHHHHHHHHHTCEEEEEEEET
T ss_pred CccEEEEEEC--C---CcHHHHHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 4899999762 3 35555555 356677778999999998543
No 449
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=25.61 E-value=1.1e+02 Score=29.25 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHh--cCCEEEECCCCCCCchHHHH
Q 009217 373 LKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFS--GSDIILCHSFHDPLLQVPLK 450 (540)
Q Consensus 373 Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~--~aDi~v~PS~~E~fglv~lE 450 (540)
.++++..+...+++++-+-+. + .+..++++++++..++ +++ ..++++ ..|++++.+-...-.-..++
T Consensus 17 ~~~~l~~~~~~~~~l~av~d~-~---~~~a~~~a~~~~~~~~-----~~~--~~~ll~~~~vD~V~i~tp~~~H~~~~~~ 85 (334)
T 3ohs_X 17 FTAVLQTLPRSEHQVVAVAAR-D---LSRAKEFAQKHDIPKA-----YGS--YEELAKDPNVEVAYVGTQHPQHKAAVML 85 (334)
T ss_dssp HHHHHTTSCTTTEEEEEEECS-S---HHHHHHHHHHHTCSCE-----ESS--HHHHHHCTTCCEEEECCCGGGHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEEEEcC-C---HHHHHHHHHHcCCCcc-----cCC--HHHHhcCCCCCEEEECCCcHHHHHHHHH
Confidence 344444332224566666533 2 3456677777753332 221 234555 58999998865544556789
Q ss_pred HHhcCCceEEEe
Q 009217 451 ALKYGAAPIAVT 462 (540)
Q Consensus 451 Ama~G~pvI~~~ 462 (540)
|+..|++|++=+
T Consensus 86 al~~GkhVl~EK 97 (334)
T 3ohs_X 86 CLAAGKAVLCEK 97 (334)
T ss_dssp HHHTTCEEEEES
T ss_pred HHhcCCEEEEEC
Confidence 999999877643
No 450
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=25.51 E-value=77 Score=29.00 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 14 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 45 (267)
T 1iy8_A 14 RVVLITG------GGSGLG---RATAVRLAAEGAKLSLVDV 45 (267)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 5566664 357777 5678899999999988753
No 451
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=25.48 E-value=69 Score=28.94 Aligned_cols=32 Identities=6% Similarity=0.029 Sum_probs=23.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 6 k~vlVTG------as~giG---~~ia~~l~~~G~~V~~~~r 37 (245)
T 1uls_A 6 KAVLITG------AAHGIG---RATLELFAKEGARLVACDI 37 (245)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4455664 357777 5678889999999988753
No 452
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=25.45 E-value=50 Score=29.25 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=23.1
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
...|||.+|.. |-+ -..+++.|.+.||+|.++..
T Consensus 17 ~~~~~I~iiG~--------G~m---G~~la~~l~~~g~~V~~~~~ 50 (209)
T 2raf_A 17 FQGMEITIFGK--------GNM---GQAIGHNFEIAGHEVTYYGS 50 (209)
T ss_dssp ---CEEEEECC--------SHH---HHHHHHHHHHTTCEEEEECT
T ss_pred cCCCEEEEECC--------CHH---HHHHHHHHHHCCCEEEEEcC
Confidence 44578887742 434 46778889999999988753
No 453
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=25.36 E-value=82 Score=28.45 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=24.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 9 ~k~vlITG------as~giG---~~~a~~l~~~G~~V~~~~r 41 (253)
T 3qiv_A 9 NKVGIVTG------SGGGIG---QAYAEALAREGAAVVVADI 41 (253)
T ss_dssp TCEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC------CCChHH---HHHHHHHHHCCCEEEEEcC
Confidence 35666764 357777 6788999999999887753
No 454
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=25.33 E-value=1.5e+02 Score=25.04 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=39.1
Q ss_pred ccCCHH--HHHHHHHHHHhcCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHHhcCCEEEE
Q 009217 366 SDVFLE--NLKAVVRGAKMRGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIFSGSDIILC 437 (540)
Q Consensus 366 ~~KG~~--~Li~A~~~l~~~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~~~aDi~v~ 437 (540)
.+|+.| +.++|+.....-+.-+++-|++ ++...++.+.++++ .+|...+ .++.....+.++||-|+-
T Consensus 90 ~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~---DF~plv~~lr~~~G-~~V~v~g-~~~~~s~~L~~~ad~fi~ 158 (165)
T 2qip_A 90 AKGDWDVGITLDAIEIAPDVDRVILVSGDG---DFSLLVERIQQRYN-KKVTVYG-VPRLTSQTLIDCADNFVA 158 (165)
T ss_dssp CSCCCHHHHHHHHHHHGGGCSEEEEECCCG---GGHHHHHHHHHHHC-CEEEEEE-CGGGSCHHHHHHSSEEEE
T ss_pred cCCCccHHHHHHHHHhhccCCEEEEEECCh---hHHHHHHHHHHHcC-cEEEEEe-CCCcChHHHHHhCCEEEe
Confidence 345655 5667776543234333334443 46777777766555 5777664 333233567788998874
No 455
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=25.32 E-value=47 Score=31.99 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=22.7
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcC-CeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKG-HLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~G-h~V~vi~p~ 99 (540)
++|+||+.. .+|++| ..|++.|.++| ++|.++...
T Consensus 45 ~~~~vlVtG-------atG~iG---~~l~~~L~~~g~~~V~~~~r~ 80 (357)
T 2x6t_A 45 EGRMIIVTG-------GAGFIG---SNIVKALNDKGITDILVVDNL 80 (357)
T ss_dssp ---CEEEET-------TTSHHH---HHHHHHHHHTTCCCEEEEECC
T ss_pred CCCEEEEEC-------CCcHHH---HHHHHHHHHCCCcEEEEEecC
Confidence 357776432 246665 67788899999 999988643
No 456
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=25.25 E-value=78 Score=29.28 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=24.2
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.|+++||. ..||+| ..+++.|.++|++|.++.
T Consensus 11 ~k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~ 42 (281)
T 3svt_A 11 DRTYLVTG------GGSGIG---KGVAAGLVAAGASVMIVG 42 (281)
T ss_dssp TCEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEe
Confidence 35666764 357777 578899999999988775
No 457
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=25.19 E-value=59 Score=29.21 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=18.9
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
.||+| ..+++.|.++|++|.++.
T Consensus 14 sggiG---~~~a~~l~~~G~~V~~~~ 36 (247)
T 2hq1_A 14 SRGLG---KAIAWKLGNMGANIVLNG 36 (247)
T ss_dssp SSHHH---HHHHHHHHHTTCEEEEEE
T ss_pred CchHH---HHHHHHHHHCCCEEEEEc
Confidence 57777 678889999999998874
No 458
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=25.18 E-value=76 Score=31.20 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=27.4
Q ss_pred ceEEEEEeccccccccccHHHH--HhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASY--VTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~--v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+|++++. .||+|+. +.+|+.+|+++|..|.++..
T Consensus 2 ~~i~~~~g-------kGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 2 ALILTFLG-------KSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp CEEEEEEC-------SBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cEEEEEeC-------CCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 67887764 4787765 46788889999999999875
No 459
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=25.18 E-value=72 Score=29.33 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=24.0
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 30 k~vlITG------as~gIG---~~la~~l~~~G~~V~~~~r 61 (271)
T 4iin_A 30 KNVLITG------ASKGIG---AEIAKTLASMGLKVWINYR 61 (271)
T ss_dssp CEEEETT------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4565654 357777 6888999999999988764
No 460
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=25.05 E-value=1.9e+02 Score=28.73 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCEEEECCC----CCC--CchHHHHHHhcCCceEEEecCCCccccce
Q 009217 423 ALLHLIFSGSDIILCHSF----HDP--LLQVPLKALKYGAAPIAVTSSDIEFRHFA 472 (540)
Q Consensus 423 ~~~~~~~~~aDi~v~PS~----~E~--fglv~lEAma~G~pvI~~~~~~gg~~e~v 472 (540)
+.+.+.++.||+++..-. ..| +.--.++.|.-|..+|-...+-||.-|..
T Consensus 267 ~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t 322 (405)
T 4dio_A 267 ALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGA 322 (405)
T ss_dssp HHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTC
T ss_pred hHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCcccc
Confidence 356678899999987532 222 34467888999986665543336776663
No 461
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=25.03 E-value=70 Score=28.73 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 3 k~vlVTG------as~giG---~~~a~~l~~~G~~V~~~~r 34 (239)
T 2ekp_A 3 RKALVTG------GSRGIG---RAIAEALVARGYRVAIASR 34 (239)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4455664 357777 6788899999999988764
No 462
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=25.03 E-value=58 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=22.5
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.+||.+|.. |.+| ..++..|++.||+|+++-.
T Consensus 15 ~~~I~VIG~--------G~mG---~~iA~~la~~G~~V~~~d~ 46 (302)
T 1f0y_A 15 VKHVTVIGG--------GLMG---AGIAQVAAATGHTVVLVDQ 46 (302)
T ss_dssp CCEEEEECC--------SHHH---HHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEEC
Confidence 357877632 4444 5688889999999987753
No 463
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=25.02 E-value=42 Score=32.05 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=22.8
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||.+|. .|.+| ..++..|.+.||+|+++..
T Consensus 1 m~I~iiG--------~G~mG---~~~a~~L~~~g~~V~~~~r 31 (335)
T 1txg_A 1 MIVSILG--------AGAMG---SALSVPLVDNGNEVRIWGT 31 (335)
T ss_dssp CEEEEES--------CCHHH---HHHHHHHHHHCCEEEEECC
T ss_pred CEEEEEC--------cCHHH---HHHHHHHHhCCCeEEEEEc
Confidence 6888763 25455 5667888899999998864
No 464
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=25.01 E-value=3.5e+02 Score=25.27 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=74.5
Q ss_pred eEEEEEecccccCCHHHHHHHHHHHHhcCcEEEEE--ecCCChhHHHHHHHHHHHhCCC--cEEEEEecChHHHHHHHh-
Q 009217 356 IVVGCIFSDVSDVFLENLKAVVRGAKMRGIQFVFT--GTNKLPSASRALVSFQEELKDG--IVIFVDSYDDALLHLIFS- 430 (540)
Q Consensus 356 ~lv~~vgrl~~~KG~~~Li~A~~~l~~~~~~lvi~--G~g~~~~~~~~l~~l~~~~~~~--~v~f~~~~~~~~~~~~~~- 430 (540)
+.++.+..-.+.|.++.|+++++ +..-++.+. |.|...++. .+.+.+..+.+ +|.+. +.. +....+..
T Consensus 103 ~~~lvv~~~s~~~sl~dL~~~ak---~~p~~~~~g~~g~Gs~~hl~--~~~l~~~~G~~~~~Vpy~-g~~-~a~~al~~G 175 (301)
T 2qpq_A 103 PSVFVVPAGSKYKTLGELMAAAK---QTNTQVTYGSCGNGTPQHLA--GELLNVSAKTHMVHVPYK-GCG-PALNDVLGS 175 (301)
T ss_dssp EEEEEEETTCSCCSHHHHHHHTC---SSSCCCEEEESSTTSHHHHH--HHHHHHHHTCCCEEEECS-SHH-HHHHHHHTT
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH---hCCCceEEecCCCCcHHHHH--HHHHHHHhCCCeEEeccC-ChH-HHHHHHHCC
Confidence 55666666678888777776543 222334443 323222222 22333444432 33221 112 33334443
Q ss_pred cCCEEEECCCCCCCchHHHHHHhcCCce-EEEec--CCCccccc--e-ecc---CCccccceeecCCCCH----HHHHHH
Q 009217 431 GSDIILCHSFHDPLLQVPLKALKYGAAP-IAVTS--SDIEFRHF--A-EFD---HESTRFSRFISSTFGN----ISLSQA 497 (540)
Q Consensus 431 ~aDi~v~PS~~E~fglv~lEAma~G~pv-I~~~~--~~gg~~e~--v-~~~---~~~~g~~G~l~~~~d~----~~la~a 497 (540)
..|+++... -+.++....|..- ++... ....++++ + +.+ .....+.|+..+.+.+ +.|.++
T Consensus 176 ~vD~~~~~~------~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~a 249 (301)
T 2qpq_A 176 QIGLAVVTA------SSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDG 249 (301)
T ss_dssp SSSCEEEEH------HHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHH
T ss_pred CccEEEEcH------HHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHH
Confidence 478877652 2345556667632 32211 00112222 1 000 0112355777776644 467778
Q ss_pred HHHHhcCHHHHHHHHHHHHh
Q 009217 498 LEEIKNNPLSWKRKIKDAML 517 (540)
Q Consensus 498 i~~l~~~~~~~~~~~~~a~~ 517 (540)
+.+++++|+..+.+.+.+..
T Consensus 250 l~~~~~~~~~~~~~~~~g~~ 269 (301)
T 2qpq_A 250 IAKVMQRDDVQKKLADLGYS 269 (301)
T ss_dssp HHHHHTCHHHHHHHHHHTCE
T ss_pred HHHHHcCHHHHHHHHHCCCc
Confidence 88888999999888877654
No 465
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=25.00 E-value=1.2e+02 Score=23.59 Aligned_cols=113 Identities=12% Similarity=0.061 Sum_probs=60.5
Q ss_pred cEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH-hcCCEEEECCC-CCCCchHHHHHHh---cCCceE
Q 009217 385 IQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF-SGSDIILCHSF-HDPLLQVPLKALK---YGAAPI 459 (540)
Q Consensus 385 ~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~-~~aDi~v~PS~-~E~fglv~lEAma---~G~pvI 459 (540)
.+++|+.+. +...+.++.+.+.. ...|... -+.+.....+ ...|++++=.. -+.-|+..++.+. ..+|+|
T Consensus 4 ~~ilivdd~--~~~~~~l~~~L~~~-~~~v~~~--~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 78 (135)
T 3eqz_A 4 NRVFIVDDD--TLTCNLLKTIVEPI-FGNVEAF--QHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLI 78 (135)
T ss_dssp CEEEEECSC--HHHHHHHHHHHTTT-CSCEEEE--SCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEE
T ss_pred ceEEEEeCC--HHHHHHHHHHHHhh-cceeeee--cCHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEE
Confidence 467777743 34455555554443 1344332 1222221111 12588777543 3455666666554 356666
Q ss_pred EEecCCCccc-----cceeccCCccccceeecCCCCHHHHHHHHHHHhcCH
Q 009217 460 AVTSSDIEFR-----HFAEFDHESTRFSRFISSTFGNISLSQALEEIKNNP 505 (540)
Q Consensus 460 ~~~~~~gg~~-----e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~~~ 505 (540)
+... ..-. +.+... .+.|..+|+..|.+.+.|.++|..+....
T Consensus 79 ~~s~--~~~~~~~~~~~~~~~-~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 79 LISG--YDSGVLHSAETLALS-CGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEES--SCHHHHHHHHHHHHH-TTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEEe--ccchhHHHHHHHHHH-cCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 6532 1111 111110 12466789999999999999999987543
No 466
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=25.00 E-value=79 Score=29.16 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=24.8
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 12 k~~lVTG------as~GIG---~a~a~~la~~G~~V~~~~r 43 (277)
T 3tsc_A 12 RVAFITG------AARGQG---RAHAVRMAAEGADIIAVDI 43 (277)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEEC------CccHHH---HHHHHHHHHcCCEEEEEec
Confidence 6677775 357887 6778999999999988753
No 467
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=24.98 E-value=51 Score=30.79 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=22.9
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||.+|.. |- +-..+++.|.+.||+|+++..
T Consensus 2 ~~i~iIG~--------G~---mG~~~a~~l~~~G~~V~~~dr 32 (287)
T 3pef_A 2 QKFGFIGL--------GI---MGSAMAKNLVKAGCSVTIWNR 32 (287)
T ss_dssp CEEEEECC--------SH---HHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEEee--------cH---HHHHHHHHHHHCCCeEEEEcC
Confidence 78887742 43 446778899999999987653
No 468
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=24.93 E-value=55 Score=29.76 Aligned_cols=24 Identities=13% Similarity=0.021 Sum_probs=19.4
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.||+| ..+++.|.++|++|.++..
T Consensus 16 sggiG---~~~a~~l~~~G~~V~~~~r 39 (261)
T 1gee_A 16 STGLG---KSMAIRFATEKAKVVVNYR 39 (261)
T ss_dssp SSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CChHH---HHHHHHHHHCCCEEEEEcC
Confidence 57777 6788899999999888764
No 469
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=24.91 E-value=84 Score=28.93 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=24.5
Q ss_pred eEEEEEecccccccc--ccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 58 HIIHICTEMDPLVSI--GSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 58 kIl~i~~e~~P~~~~--GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
|+++|+. .. ||+| ..+++.|.++|++|.++...
T Consensus 7 k~vlVTG------as~~~gIG---~~~a~~l~~~G~~V~~~~r~ 41 (275)
T 2pd4_A 7 KKGLIVG------VANNKSIA---YGIAQSCFNQGATLAFTYLN 41 (275)
T ss_dssp CEEEEEC------CCSTTSHH---HHHHHHHHTTTCEEEEEESS
T ss_pred CEEEEEC------CCCCCcHH---HHHHHHHHHCCCEEEEEeCC
Confidence 5566664 34 7888 56888999999999887643
No 470
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=24.82 E-value=70 Score=29.66 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=23.8
Q ss_pred eEEEEEecccccccc--ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSI--GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~--GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. .. ||+| ..+++.|+++|++|.++..
T Consensus 22 k~vlVTG------as~~~gIG---~~ia~~l~~~G~~V~~~~r 55 (285)
T 2p91_A 22 KRALITG------VANERSIA---YGIAKSFHREGAQLAFTYA 55 (285)
T ss_dssp CEEEECC------CSSTTSHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCCCCcHH---HHHHHHHHHcCCEEEEEeC
Confidence 4566764 24 7888 5678899999999988764
No 471
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=24.70 E-value=94 Score=28.52 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|.++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 32 k~vlITG------asggIG---~~la~~L~~~G~~V~~~~r 63 (272)
T 1yb1_A 32 EIVLITG------AGHGIG---RLTAYEFAKLKSKLVLWDI 63 (272)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEEc
Confidence 4555664 357777 6788899999999888763
No 472
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=24.66 E-value=55 Score=31.73 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=19.6
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|++| ..+++.|.++||+|.++...
T Consensus 33 tG~iG---~~l~~~L~~~g~~V~~~~r~ 57 (375)
T 1t2a_A 33 TGQDG---SYLAEFLLEKGYEVHGIVRR 57 (375)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CchHH---HHHHHHHHHCCCEEEEEECC
Confidence 46666 66788899999999988753
No 473
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=24.66 E-value=49 Score=30.67 Aligned_cols=57 Identities=4% Similarity=-0.090 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhc---CcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 009217 370 LENLKAVVRGAKMR---GIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSYDDALLHLIF 429 (540)
Q Consensus 370 ~~~Li~A~~~l~~~---~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~~~~~~~~~~ 429 (540)
++.+.+++..+... ..+.+.++ +..-.+.+..+.+++.++ ..+.+ ...+.++....+
T Consensus 174 ~~Dva~~~~~~l~~~~~~g~~~~~~-~~~~s~~e~~~~~~~~~g-~~~~~-~~~~~~~~~~~~ 233 (289)
T 3e48_A 174 RNDIARGVIAIIKNPDTWGKRYLLS-GYSYDMKELAAILSEASG-TEIKY-EPVSLETFAEMY 233 (289)
T ss_dssp HHHHHHHHHHHHHCGGGTTCEEEEC-CEEEEHHHHHHHHHHHHT-SCCEE-CCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcCCceEEeC-CCcCCHHHHHHHHHHHHC-CceeE-EeCCHHHHHHHh
Confidence 56778877776642 13444455 433345666666666665 44543 355666554443
No 474
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=24.63 E-value=72 Score=29.69 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=24.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 17 k~vlVTG------as~gIG---~~~a~~L~~~G~~V~~~~r 48 (291)
T 3rd5_A 17 RTVVITG------ANSGLG---AVTARELARRGATVIMAVR 48 (291)
T ss_dssp CEEEEEC------CSSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCChHH---HHHHHHHHHCCCEEEEEEC
Confidence 4555664 357887 6788999999999988764
No 475
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=24.61 E-value=2.8e+02 Score=22.52 Aligned_cols=114 Identities=15% Similarity=0.018 Sum_probs=60.0
Q ss_pred cCcEEEEEecCCChhHHHHHHHHHHHhCCCcEEEEEec-ChHHHHHHH--hcCCEEEECCC-CCCCchHHHHHHh--cCC
Q 009217 383 RGIQFVFTGTNKLPSASRALVSFQEELKDGIVIFVDSY-DDALLHLIF--SGSDIILCHSF-HDPLLQVPLKALK--YGA 456 (540)
Q Consensus 383 ~~~~lvi~G~g~~~~~~~~l~~l~~~~~~~~v~f~~~~-~~~~~~~~~--~~aDi~v~PS~-~E~fglv~lEAma--~G~ 456 (540)
...+++|+.+. +.....++.+.+..+ ........ +.++....+ ...|++++=.. -+.-|+.+++.+. ..+
T Consensus 24 ~~~~ILivdd~--~~~~~~l~~~L~~~~--~~~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~ 99 (164)
T 3t8y_A 24 RVIRVLVVDDS--AFMRMVLKDIIDSQP--DMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNLNGIEALKLIMKKAPT 99 (164)
T ss_dssp CCEEEEEECSC--HHHHHHHHHHHHTST--TEEEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHSCC
T ss_pred CccEEEEEcCC--HHHHHHHHHHHhcCC--CeEEEEecCCHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 35678888753 445566666665543 22222222 322222222 34788888644 4555676666653 345
Q ss_pred ceEEEecCCCcccc--ceeccCCccccceeecCCCC---------HHHHHHHHHHHhc
Q 009217 457 APIAVTSSDIEFRH--FAEFDHESTRFSRFISSTFG---------NISLSQALEEIKN 503 (540)
Q Consensus 457 pvI~~~~~~gg~~e--~v~~~~~~~g~~G~l~~~~d---------~~~la~ai~~l~~ 503 (540)
|+|+... ..-.+ .+... ...|..+|+..|.+ .+++.+++...+.
T Consensus 100 ~ii~~s~--~~~~~~~~~~~~-~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 100 RVIMVSS--LTEEGAAITIEA-LRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEEEEES--SCCTTCHHHHHH-HHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred eEEEEec--CCccchHHHHHH-HHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 6665432 11111 11110 11467789999988 4566667766654
No 476
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=24.61 E-value=55 Score=30.14 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=25.2
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
..|+++|+. ..||+| ..+++.|.++|+.|.++.
T Consensus 24 ~~k~vlITG------as~gIG---~~~a~~l~~~G~~v~~~~ 56 (269)
T 3gk3_A 24 AKRVAFVTG------GMGGLG---AAISRRLHDAGMAVAVSH 56 (269)
T ss_dssp CCCEEEETT------TTSHHH---HHHHHHHHTTTCEEEEEE
T ss_pred cCCEEEEEC------CCchHH---HHHHHHHHHCCCEEEEEc
Confidence 346777764 357777 678899999999998776
No 477
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=24.60 E-value=38 Score=34.31 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEE
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEV 95 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~v 95 (540)
.+++||+++.. | ..|--.-...|++.|+++||.|+|
T Consensus 5 ~~~~hvv~~p~---p---~~GHi~P~l~la~~L~~rGh~v~v 40 (456)
T 2c1x_A 5 TTNPHVAVLAF---P---FSTHAAPLLAVVRRLAAAAPHAVF 40 (456)
T ss_dssp --CCEEEEECC---C---SSSSHHHHHHHHHHHHHHCTTSEE
T ss_pred CCCCEEEEEcC---c---ccchHHHHHHHHHHHHhCCCCeEE
Confidence 34579988753 3 356667789999999999877644
No 478
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=24.41 E-value=85 Score=29.05 Aligned_cols=34 Identities=6% Similarity=-0.039 Sum_probs=25.7
Q ss_pred ceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 57 FHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
-|+++||. ..||+| ..+++.|+++|+.|.++...
T Consensus 11 ~k~~lVTG------as~gIG---~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 11 GKVAFVTG------AARGQG---RSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp TCEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEeC------CCchHH---HHHHHHHHHCCCeEEEEecc
Confidence 36777775 357777 67889999999999887543
No 479
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=24.39 E-value=85 Score=28.97 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=24.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 11 k~~lVTG------as~gIG---~a~a~~l~~~G~~V~~~~r 42 (281)
T 3s55_A 11 KTALITG------GARGMG---RSHAVALAEAGADIAICDR 42 (281)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHCCCeEEEEeC
Confidence 5666775 357777 6788999999999987764
No 480
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=24.37 E-value=53 Score=31.72 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=18.8
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.|++| ..+++.|.++||+|.++..
T Consensus 10 tG~iG---~~l~~~L~~~g~~V~~~~r 33 (372)
T 1db3_A 10 TGQDG---SYLAEFLLEKGYEVHGIKR 33 (372)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEECC
T ss_pred CChHH---HHHHHHHHHCCCEEEEEEC
Confidence 46666 6778889999999988864
No 481
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=24.19 E-value=87 Score=29.93 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=24.3
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
+|||.+|. .||.| +..+++.|.++|++|++.=
T Consensus 4 ~~~i~~iG--------iGg~G--ms~~A~~L~~~G~~V~~~D 35 (326)
T 3eag_A 4 MKHIHIIG--------IGGTF--MGGLAAIAKEAGFEVSGCD 35 (326)
T ss_dssp CCEEEEES--------CCSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEE--------ECHHH--HHHHHHHHHhCCCEEEEEc
Confidence 46777663 58887 3467888999999999863
No 482
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=24.13 E-value=78 Score=28.84 Aligned_cols=32 Identities=9% Similarity=0.182 Sum_probs=24.0
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 22 k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~r 53 (253)
T 2nm0_A 22 RSVLVTG------GNRGIG---LAIARAFADAGDKVAITYR 53 (253)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEeC
Confidence 5566664 357777 5688999999999987764
No 483
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=24.09 E-value=98 Score=29.02 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=24.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 32 k~vlVTG------as~gIG---~~la~~l~~~G~~V~~~~r 63 (301)
T 3tjr_A 32 RAAVVTG------GASGIG---LATATEFARRGARLVLSDV 63 (301)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCCHHH---HHHHHHHHHCCCEEEEEEC
Confidence 5666764 357777 6788999999999887754
No 484
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.08 E-value=98 Score=28.27 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=24.6
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|+++|++|.++..
T Consensus 12 k~vlVTG------as~gIG---~aia~~l~~~G~~V~~~~r 43 (264)
T 3ucx_A 12 KVVVISG------VGPALG---TTLARRCAEQGADLVLAAR 43 (264)
T ss_dssp CEEEEES------CCTTHH---HHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEC------CCcHHH---HHHHHHHHHCcCEEEEEeC
Confidence 5666775 357887 6778899999999887753
No 485
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=24.06 E-value=62 Score=29.59 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=23.6
Q ss_pred eEEEEEecccccccc--ccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSI--GSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~--GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. .. ||+| ..+++.|+++|++|.++..
T Consensus 9 k~vlVTG------as~~~gIG---~~ia~~l~~~G~~V~~~~r 42 (261)
T 2wyu_A 9 KKALVMG------VTNQRSLG---FAIAAKLKEAGAEVALSYQ 42 (261)
T ss_dssp CEEEEES------CCSSSSHH---HHHHHHHHHHTCEEEEEES
T ss_pred CEEEEEC------CCCCCcHH---HHHHHHHHHCCCEEEEEcC
Confidence 4555664 24 7888 5678899999999988763
No 486
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=24.03 E-value=60 Score=30.87 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=19.4
Q ss_pred cccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+|++| ..|++.|.++||+|.++...
T Consensus 30 tG~iG---~~l~~~L~~~g~~V~~~~r~ 54 (333)
T 2q1w_A 30 CGQIG---SHIAELLLERGDKVVGIDNF 54 (333)
T ss_dssp TSHHH---HHHHHHHHHTTCEEEEEECC
T ss_pred ccHHH---HHHHHHHHHCCCEEEEEECC
Confidence 46666 56788899999999988643
No 487
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=24.02 E-value=2.6e+02 Score=21.80 Aligned_cols=70 Identities=10% Similarity=0.114 Sum_probs=39.5
Q ss_pred CCEEEECCC-CCCCchHHHHHHh---cCCceEEEecCCCccccceeccCCccccceeecCCCCHHHHHHHHHHHhc
Q 009217 432 SDIILCHSF-HDPLLQVPLKALK---YGAAPIAVTSSDIEFRHFAEFDHESTRFSRFISSTFGNISLSQALEEIKN 503 (540)
Q Consensus 432 aDi~v~PS~-~E~fglv~lEAma---~G~pvI~~~~~~gg~~e~v~~~~~~~g~~G~l~~~~d~~~la~ai~~l~~ 503 (540)
.|++++=-. -..-|+-.++.+. ..+|+|+... .......+..-. ..|..+|+..|.+.+.|..+|..++.
T Consensus 45 ~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~-~~~~~~~~~~~~-~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 45 VQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITG-YTDSASMMAAIN-DAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEES-CTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeC-CCChHHHHHHHH-hhchhhhccCCCCHHHHHHHHHHHHH
Confidence 577776433 2334666666553 3556666432 011112221100 12466799999999999999988764
No 488
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=24.01 E-value=65 Score=30.53 Aligned_cols=43 Identities=9% Similarity=-0.126 Sum_probs=28.7
Q ss_pred CCCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 54 KNGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 54 ~~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
.++|||+.++....+... ..=.....++++|.+.||+|.++-+
T Consensus 11 ~~~~~v~vl~gg~s~E~~--vsl~s~~~v~~al~~~g~~v~~i~~ 53 (317)
T 4eg0_A 11 KRFGKVAVLFGGESAERE--VSLTSGRLVLQGLRDAGIDAHPFDP 53 (317)
T ss_dssp GGGCEEEEECCCSSTTHH--HHHHHHHHHHHHHHHTTCEEEEECT
T ss_pred hhcceEEEEECCCCCcce--eeHHHHHHHHHHHHHCCCEEEEEeC
Confidence 345799998764322110 0112457889999999999999874
No 489
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.98 E-value=51 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=23.3
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHc-CCeEEEEee
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRK-GHLVEVILP 98 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~-Gh~V~vi~p 98 (540)
++||+++. .| .+-..+++.|.+. ||+|+++..
T Consensus 39 ~~~v~IiG--------~G---~~G~~~a~~L~~~~g~~V~vid~ 71 (183)
T 3c85_A 39 HAQVLILG--------MG---RIGTGAYDELRARYGKISLGIEI 71 (183)
T ss_dssp TCSEEEEC--------CS---HHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCcEEEEC--------CC---HHHHHHHHHHHhccCCeEEEEEC
Confidence 57888663 14 4446777889998 999999864
No 490
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=23.98 E-value=38 Score=29.92 Aligned_cols=37 Identities=5% Similarity=-0.074 Sum_probs=26.6
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
+.||++..+. |....+..+|.+.|.+.|++|+|+...
T Consensus 8 ~k~IllgvTG-------s~aa~k~~~l~~~L~~~g~~V~vv~T~ 44 (194)
T 1p3y_1 8 DKKLLIGICG-------SISSVGISSYLLYFKSFFKEIRVVMTK 44 (194)
T ss_dssp GCEEEEEECS-------CGGGGGTHHHHHHHTTTSSEEEEEECH
T ss_pred CCEEEEEEEC-------HHHHHHHHHHHHHHHHCCCEEEEEEch
Confidence 4578876652 222335778999999999999999754
No 491
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A
Probab=23.86 E-value=58 Score=30.92 Aligned_cols=25 Identities=20% Similarity=0.028 Sum_probs=18.7
Q ss_pred cccHHHHHhHHHHHHHHc-CCeEEEEeec
Q 009217 72 IGSLASYVTGLSGALQRK-GHLVEVILPK 99 (540)
Q Consensus 72 ~GG~~~~v~~L~~~L~~~-Gh~V~vi~p~ 99 (540)
+|++| ..+++.|.++ ||+|.++...
T Consensus 9 tG~iG---~~l~~~L~~~~g~~V~~~~r~ 34 (345)
T 2bll_A 9 NGFIG---NHLTERLLREDHYEVYGLDIG 34 (345)
T ss_dssp SSHHH---HHHHHHHHHSTTCEEEEEESC
T ss_pred CcHHH---HHHHHHHHHhCCCEEEEEeCC
Confidence 35555 6677889888 8999988743
No 492
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=23.84 E-value=90 Score=29.03 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=27.0
Q ss_pred ceEEEEEeccccccccccH--HHHHhHHHHHHHHcCCeEEEEee
Q 009217 57 FHIIHICTEMDPLVSIGSL--ASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 57 mkIl~i~~e~~P~~~~GG~--~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|||+.|++. .||+ .+.+.+|+.+|+++|..|.+|=.
T Consensus 4 ~kvI~v~s~------KGGvGKTT~a~nLA~~La~~G~~VlliD~ 41 (286)
T 2xj4_A 4 TRVIVVGNE------KGGAGKSTIAVHLVTALLYGGAKVAVIDL 41 (286)
T ss_dssp CEEEEECCS------SSCTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEcC------CCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 567777652 2554 46778899999999999988843
No 493
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=23.83 E-value=39 Score=31.72 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=24.1
Q ss_pred CceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 56 GFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 56 ~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
.|+|+++. .+|++| ..++++|.++||+|.+++..
T Consensus 4 ~~~ilVtG-------atG~iG---~~l~~~L~~~g~~V~~~~R~ 37 (313)
T 1qyd_A 4 KSRVLIVG-------GTGYIG---KRIVNASISLGHPTYVLFRP 37 (313)
T ss_dssp CCCEEEES-------TTSTTH---HHHHHHHHHTTCCEEEECCS
T ss_pred CCEEEEEc-------CCcHHH---HHHHHHHHhCCCcEEEEECC
Confidence 46777543 246666 55678899999999988754
No 494
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=23.79 E-value=78 Score=28.67 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 8 k~vlVTG------as~giG---~~ia~~l~~~G~~V~~~~r 39 (250)
T 2fwm_X 8 KNVWVTG------AGKGIG---YATALAFVEAGAKVTGFDQ 39 (250)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 4455664 357777 5678999999999988764
No 495
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=23.79 E-value=72 Score=29.35 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=23.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++|+. ..||+| ..+++.|.++|++|.++..
T Consensus 7 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~r 38 (278)
T 1spx_A 7 KVAIITG------SSNGIG---RATAVLFAREGAKVTITGR 38 (278)
T ss_dssp CEEEETT------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEeC------CCchHH---HHHHHHHHHCCCEEEEEeC
Confidence 4555654 357777 5678899999999988763
No 496
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=23.72 E-value=46 Score=33.30 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEeec
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILPK 99 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p~ 99 (540)
..|||+++. .|.+-..+++.|.+.|++|+||-..
T Consensus 3 ~~~~viIiG-----------~Gr~G~~va~~L~~~g~~vvvId~d 36 (413)
T 3l9w_A 3 HGMRVIIAG-----------FGRFGQITGRLLLSSGVKMVVLDHD 36 (413)
T ss_dssp -CCSEEEEC-----------CSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEC-----------CCHHHHHHHHHHHHCCCCEEEEECC
Confidence 347888663 2456678889999999999999643
No 497
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=23.71 E-value=24 Score=31.05 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=21.0
Q ss_pred CCceEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEE-EE
Q 009217 55 NGFHIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVE-VI 96 (540)
Q Consensus 55 ~~mkIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~-vi 96 (540)
++|||+.|+.. |. .++....+.+....+.+.|++|+ ++
T Consensus 3 ~~mkil~I~GS--~r--~~s~t~~l~~~~~~~~~~g~~v~~~i 41 (193)
T 3svl_A 3 EKLQVVTLLGS--LR--KGSFNGMVARTLPKIAPASMEVNALP 41 (193)
T ss_dssp -CEEEEEEECC--CS--TTCHHHHHHHHGGGTSCTTEEEEECC
T ss_pred CCCEEEEEEcc--CC--CCCHHHHHHHHHHHHccCCCEEEEEE
Confidence 46999999874 42 35554333222222334578887 54
No 498
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=23.67 E-value=97 Score=28.31 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=22.9
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|.++|+. ..||+| ..+++.|.++|++|.++.
T Consensus 17 k~vlITG------asggiG---~~~a~~l~~~G~~V~~~~ 47 (278)
T 2bgk_A 17 KVAIITG------GAGGIG---ETTAKLFVRYGAKVVIAD 47 (278)
T ss_dssp CEEEEES------TTSHHH---HHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEC------CCCHHH---HHHHHHHHHCCCEEEEEc
Confidence 4555664 357777 578889999999998875
No 499
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=23.60 E-value=96 Score=28.49 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=23.3
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEe
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVIL 97 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~ 97 (540)
|+++|+. ..||+| ..+++.|.++|++|.++.
T Consensus 10 k~vlVTG------as~gIG---~~ia~~l~~~G~~V~~~~ 40 (270)
T 1yde_A 10 KVVVVTG------GGRGIG---AGIVRAFVNSGARVVICD 40 (270)
T ss_dssp CEEEEET------CSSHHH---HHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEe
Confidence 4555664 357777 567889999999988775
No 500
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=23.59 E-value=95 Score=28.71 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=24.5
Q ss_pred eEEEEEeccccccccccHHHHHhHHHHHHHHcCCeEEEEee
Q 009217 58 HIIHICTEMDPLVSIGSLASYVTGLSGALQRKGHLVEVILP 98 (540)
Q Consensus 58 kIl~i~~e~~P~~~~GG~~~~v~~L~~~L~~~Gh~V~vi~p 98 (540)
|+++||. ..||+| ..+++.|+++|++|.++..
T Consensus 28 k~vlVTG------as~GIG---~aia~~l~~~G~~V~~~~r 59 (277)
T 4dqx_A 28 RVCIVTG------GGSGIG---RATAELFAKNGAYVVVADV 59 (277)
T ss_dssp CEEEEET------TTSHHH---HHHHHHHHHTTCEEEEEES
T ss_pred CEEEEEC------CCcHHH---HHHHHHHHHCCCEEEEEeC
Confidence 5666775 357777 5788999999999987753
Done!