BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009218
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HSI|A Chain A, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|B Chain B, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
pdb|3HSI|C Chain C, Crystal Structure Of Phosphatidylserine Synthase
Haemophilus Influenzae Rd Kw20
Length = 458
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 390 HAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKS 449
H KG+ VDD Y+++ N+N R A D E + Y P +++ QI + K
Sbjct: 364 HLKGVWVDDRYILLTGNNLNPR--AWRLDAENGLLIYDPQQQLLAQVEKEQNQIRQHTKV 421
Query: 450 LWSEHLGMLDNCFEEPESLDCIRK 473
L +H L+ + PE + + K
Sbjct: 422 L--KHYTELEELNQYPEPVQKLLK 443
>pdb|2EYL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T82s
Length = 149
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
S K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRSDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1ENC|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
Length = 149
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 327 QTMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DK 375
+T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 21 ETVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDK 78
Query: 376 VSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARK 435
+ K R + Y++A G +V++ V G A + Y+P++T +
Sbjct: 79 GQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQH 124
Query: 436 LKHPHGQIYGYRKSLWSE 453
L+ Q + ++WSE
Sbjct: 125 LRKSEAQAKKEKLNIWSE 142
>pdb|2F0M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72V
Length = 149
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 376
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0L|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72L
Length = 149
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKLEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0E|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V23l
Length = 149
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0D|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I92v
Length = 149
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + YV+A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EY5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41s
Length = 149
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD+ HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDSPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1KDB|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYEPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSEH 454
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|1F2M|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + +Y P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------AYAPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1STA|A Chain A, Accommodation Of Insertion Mutations On The Surface And In
The Interior Of Staphylococcal Nuclease
Length = 151
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 24 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 81
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 82 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 127
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 128 RKSEAQAKKEKLNIWSE 144
>pdb|1NSN|S Chain S, The Crystal Structure Of Antibody N10-Staphylococcal
Nuclease Complex At 2.9 Angstroms Resolution
Length = 149
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSEH 454
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|2EYH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62s
Length = 149
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFSKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0J|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72v
Length = 149
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 376
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1F2Y|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKV--------------AAVYAPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0V|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lV66LI72L
Length = 149
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKLEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EYF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T44v
Length = 149
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPEVKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EY2|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41c
Length = 149
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDCPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY7|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S128a
Length = 149
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKAEAQAKKEKLNIWSE 142
>pdb|2F0U|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25II72V
Length = 149
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 376
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TIKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0I|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72l
Length = 149
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKLEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY0|A Chain A, Structure Of Wild-Type S. Nuclease At 1.6 A Resolution
pdb|1EYD|A Chain A, Structure Of Wild-Type S. Nuclease At 1.7 A Resolution
pdb|1SNC|A Chain A, The Crystal Structure Of The Ternary Complex Of
Staphylococcal Nuclease, Ca2+, And The Inhibitor PdTp,
Refined At 1.65 Angstroms
pdb|1STG|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STH|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STN|A Chain A, The Crystal Structure Of Staphylococcal Nuclease Refined
At 1.7 Angstroms Resolution
Length = 149
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EY6|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41v
Length = 149
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDVPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0S|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lI92V
Length = 149
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + YV+A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1SNM|A Chain A, Active Site Mutant Glu-43 (Right Arrow) Asp In
Staphylococcal Nuclease Displays Nonlocal Structural
Changes
Length = 149
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPDTKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2SNS|A Chain A, Staphylococcal Nuclease. Proposed Mechanism Of Action
Based On Structure Of Enzyme-Thymidine
3(Prime),5(Prime)-Biphosphate-Calcium Ion Complex At
1.5-Angstroms Resolution
Length = 149
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 27/138 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 376
T+++MY R + VD HP+ + Y G A + N K+
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFNKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSEH 454
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|2F0K|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25I
Length = 149
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TIKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY6|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T41i
Length = 149
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVD----AHPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDIPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY4|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S59a
Length = 149
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEAAAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66iI72V
Length = 149
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 376
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMIENAKKVEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1KDC|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 27/138 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYNPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSEH 454
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|2F0F|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant L25i
Length = 149
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2SNM|A Chain A, In A Staphylococcal Nuclease Mutant The Side-Chain Of A
Lysine Replacing Valine 66 Is Fully Buried In The
Hydrophobic Core
Length = 149
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMKENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0N|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
L25iI72L
Length = 149
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKLEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0G|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66i
Length = 149
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMIENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1JOK|A Chain A, Averaged Structure For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOO|A Chain A, Averaged Structure For Unligated Staphylococcal Nuclease-
H124l
pdb|1JOQ|A Chain A, Ensemble Structures For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOR|A Chain A, Ensemble Structures For Unligated Staphylococcal Nuclease-
H124l
pdb|1SNO|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQLL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1KDA|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 27/138 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYDPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSEH 454
+ Q + ++WSE+
Sbjct: 126 RKSEAQAKKEKLNIWSEN 143
>pdb|2F0H|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66l
Length = 149
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2EYJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62v
Length = 149
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFVKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1EY5|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
pdb|1EZ8|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
Length = 149
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMVFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25IV66LI72L
Length = 149
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TIKIMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKLEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1A2T|A Chain A, Staphylococcal Nuclease, B-Mercaptoethanol Disulfide To
V23c Variant
pdb|1A2U|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 1-N-
Butane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3T|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 2-
Fluoroethane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3U|A Chain A, Staphylococcal Nuclease, Cyclohexane Thiol Disulfide To
V23c Variant
pdb|1A3V|A Chain A, Staphylococcal Nuclease, Cyclopentane Thiol Disulfide To
V23c Variant
pdb|1AEX|A Chain A, Staphylococcal Nuclease, Methane Thiol Disulfide To V23c
Variant
pdb|2NUC|A Chain A, Staphlococcal Nuclease, Ethane Thiol Disulfide To V23c
Variant
pdb|3NUC|A Chain A, Staphlococcal Nuclease, 1-N-Propane Thiol Disulfide To
V23c Variant
pdb|5NUC|A Chain A, Staphylococcal Nuclease, 1-N-Pentane Thiol Disulfide To
V23c Variant
Length = 149
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T ++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TXKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1NUC|A Chain A, Staphylococcal Nuclease, V23c Variant
Length = 149
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T ++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TCKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1N7Z|A Chain A, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
pdb|1N7Z|B Chain B, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
pdb|1N7Z|C Chain C, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
pdb|1N7Z|D Chain D, Structure And Location Of Gene Product 8 In The
Bacteriophage T4 Baseplate
Length = 334
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 284 ELALKIASKIRANERFAVYVIIPMWPEG---DPKTNTVQEILFWQSQTMQMMYSVVAQEL 340
E +I + N Y+++P WPE DP ++ L WQ ++Y V A +
Sbjct: 189 EYLFEIPPDVSINRCTNEYIVVP-WPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTI 247
Query: 341 R 341
R
Sbjct: 248 R 248
>pdb|2F0P|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66iV99I
Length = 149
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMIENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G ++++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMINEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0T|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lV99I
Length = 149
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G ++++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMINEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|4H7B|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
I72vV99L
Length = 149
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNGDKV------- 376
T+++MY R + VD HP+ + Y G A + N KV
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKVEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G ++++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYIYADGKMLNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|2F0Q|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lI92L
Length = 149
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKIEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G +V++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYLYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
>pdb|1N80|A Chain A, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N80|B Chain B, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N80|C Chain C, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N80|D Chain D, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|A Chain A, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|B Chain B, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|C Chain C, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1N8B|D Chain D, Bacteriophage T4 Baseplate Structural Protein Gp8
pdb|1PDM|A Chain A, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|B Chain B, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|C Chain C, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|D Chain D, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|E Chain E, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|F Chain F, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|G Chain G, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|H Chain H, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|I Chain I, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|J Chain J, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|K Chain K, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1PDM|L Chain L, Fitting Of Gp8 Structure Into The Cryoem Reconstruction Of
The Bacteriophage T4 Baseplate
pdb|1TJA|A Chain A, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
pdb|1TJA|B Chain B, Fitting Of Gp8, Gp9, And Gp11 Into The Cryo-em
Reconstruction Of The Bacteriophage T4 Contracted Tail
Length = 334
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 284 ELALKIASKIRANERFAVYVIIPMWPEG---DPKTNTVQEILFWQSQTMQMMYSVVAQEL 340
E +I + N Y+++P WPE DP ++ L WQ ++Y V A +
Sbjct: 189 EYLFEIPPDVSINRCTNEYIVVP-WPEELKEDPTRWGYEDNLTWQQDDFGLIYRVKANTI 247
Query: 341 R 341
R
Sbjct: 248 R 248
>pdb|2EXZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T22c
Length = 149
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 329 MQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKVS 377
+++MY R + VD HP+ + Y G A + N DK
Sbjct: 23 VKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMVENAKKIEVEFDKGQ 80
Query: 378 DSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLK 437
+ K R + Y++A G +V++ V G A + Y+P++T + L+
Sbjct: 81 RTDKYGRGLAYIYADGKMVNEALVRQGLAKVAY--------------VYKPNNTHEQHLR 126
Query: 438 HPHGQIYGYRKSLWSE 453
Q + ++WSE
Sbjct: 127 KSEAQAKKEKLNIWSE 142
>pdb|1IHZ|A Chain A, Structure Of S. Nuclease Mutant Quintuple Mutant
V23lV66LI72LI92LV99L
Length = 149
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 328 TMQMMYSVVAQELREMQVDA----HPQDYLSFYCLGKREEAPKDVLANNG-------DKV 376
T+++MY R + VD HP+ + Y G A + N DK
Sbjct: 22 TLKLMYKGQPMTFRLLLVDTPETKHPKKGVEKY--GPEASAFTKKMLENAKKLEVEFDKG 79
Query: 377 SDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL 436
+ K R + Y++A G ++++ V G A + Y+P++T + L
Sbjct: 80 QRTDKYGRGLAYLYADGKMLNEALVRQGLAKVAY--------------VYKPNNTHEQHL 125
Query: 437 KHPHGQIYGYRKSLWSE 453
+ Q + ++WSE
Sbjct: 126 RKSEAQAKKEKLNIWSE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,288,500
Number of Sequences: 62578
Number of extensions: 747557
Number of successful extensions: 1476
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 57
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)