Query 009218
Match_columns 540
No_of_seqs 383 out of 1965
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 21:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 2E-135 5E-140 1115.9 46.3 540 1-540 318-868 (868)
2 PLN02270 phospholipase D alpha 100.0 3E-127 7E-132 1051.8 42.2 506 1-540 287-808 (808)
3 PLN02352 phospholipase D epsil 100.0 7E-127 2E-131 1047.9 42.7 480 1-540 266-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 2E-117 3E-122 969.7 39.6 471 2-540 373-853 (887)
5 PLN02866 phospholipase D 100.0 4.4E-84 9.6E-89 721.6 41.3 428 40-515 443-1056(1068)
6 PRK12452 cardiolipin synthetas 100.0 4.3E-38 9.2E-43 343.3 25.8 255 14-431 191-466 (509)
7 PRK01642 cls cardiolipin synth 100.0 1E-36 2.2E-41 331.6 26.7 250 14-431 167-440 (483)
8 PRK11263 cardiolipin synthase 100.0 1.1E-35 2.4E-40 316.1 25.2 263 14-455 59-343 (411)
9 COG1502 Cls Phosphatidylserine 100.0 1.7E-29 3.7E-34 271.8 24.8 260 14-431 111-395 (438)
10 PHA02820 phospholipase-D-like 99.9 1.7E-26 3.7E-31 246.7 22.7 274 14-428 72-360 (424)
11 PRK09428 pssA phosphatidylseri 99.9 2.6E-25 5.6E-30 238.6 23.4 136 238-430 250-395 (451)
12 PF12357 PLD_C: Phospholipase 99.9 3E-27 6.5E-32 187.3 6.1 73 459-531 2-74 (74)
13 PHA03003 palmytilated EEV memb 99.9 1.9E-24 4.1E-29 227.9 19.9 261 14-430 74-348 (369)
14 PHA02820 phospholipase-D-like 99.6 2.9E-15 6.4E-20 160.5 16.0 147 198-427 4-150 (424)
15 cd00138 PLDc Phospholipase D. 99.5 3.8E-13 8.2E-18 126.8 12.4 131 237-429 19-152 (176)
16 PRK13912 nuclease NucT; Provis 99.4 7.2E-13 1.6E-17 126.1 11.1 128 238-431 32-160 (177)
17 PRK05443 polyphosphate kinase; 99.4 7.6E-12 1.7E-16 140.6 17.8 218 14-430 391-633 (691)
18 PF13091 PLDc_2: PLD-like doma 99.4 2.5E-12 5.5E-17 114.4 9.6 113 244-429 1-113 (126)
19 PHA03003 palmytilated EEV memb 99.3 4.4E-11 9.6E-16 126.5 16.1 122 238-426 30-151 (369)
20 TIGR03705 poly_P_kin polyphosp 99.3 5.2E-11 1.1E-15 133.3 14.7 109 237-430 502-624 (672)
21 PRK11263 cardiolipin synthase 99.2 1.1E-10 2.5E-15 124.8 14.0 134 238-428 17-153 (411)
22 PRK12452 cardiolipin synthetas 99.1 1.2E-09 2.6E-14 120.1 13.3 133 238-428 149-285 (509)
23 PRK01642 cls cardiolipin synth 99.1 1.6E-09 3.6E-14 118.6 14.3 135 238-428 125-264 (483)
24 PRK09428 pssA phosphatidylseri 99.0 2.2E-09 4.7E-14 116.0 14.2 137 238-429 34-178 (451)
25 PRK05443 polyphosphate kinase; 99.0 1.4E-09 3E-14 122.5 12.6 119 242-431 351-481 (691)
26 PF00614 PLDc: Phospholipase D 99.0 7.3E-11 1.6E-15 77.2 0.3 27 41-75 2-28 (28)
27 KOG3603 Predicted phospholipas 98.9 5.2E-08 1.1E-12 101.5 16.5 161 198-431 48-210 (456)
28 smart00155 PLDc Phospholipase 98.7 1.6E-08 3.4E-13 66.6 3.3 27 386-412 2-28 (28)
29 PF00614 PLDc: Phospholipase D 98.4 8.7E-08 1.9E-12 62.8 1.7 26 387-412 3-28 (28)
30 COG1502 Cls Phosphatidylserine 98.1 1.9E-05 4.1E-10 85.3 12.4 122 238-415 69-191 (438)
31 TIGR03705 poly_P_kin polyphosp 98.1 2.5E-05 5.3E-10 88.2 13.1 118 242-430 342-471 (672)
32 KOG3603 Predicted phospholipas 98.1 0.00017 3.7E-09 75.7 17.1 141 241-429 278-419 (456)
33 cd00138 PLDc Phospholipase D. 98.0 1.4E-05 3E-10 75.1 7.4 56 41-136 111-168 (176)
34 PLN02866 phospholipase D 97.9 8.3E-05 1.8E-09 86.0 12.1 62 238-306 343-404 (1068)
35 smart00155 PLDc Phospholipase 97.6 5.8E-05 1.3E-09 49.5 2.6 24 42-73 3-26 (28)
36 PRK13912 nuclease NucT; Provis 97.4 0.00072 1.6E-08 64.4 8.7 56 42-137 118-174 (177)
37 PF13091 PLDc_2: PLD-like doma 97.1 0.0011 2.4E-08 58.5 6.7 53 42-134 73-126 (126)
38 PF07894 DUF1669: Protein of u 96.8 0.0063 1.4E-07 61.7 9.4 130 238-425 133-262 (284)
39 PF13918 PLDc_3: PLD-like doma 95.5 0.21 4.5E-06 47.5 11.8 56 241-310 84-145 (177)
40 PLN02352 phospholipase D epsil 95.5 0.081 1.8E-06 60.5 10.5 64 238-304 186-249 (758)
41 KOG3964 Phosphatidylglycerolph 94.9 0.19 4.1E-06 52.8 10.2 25 400-426 396-420 (469)
42 PLN02270 phospholipase D alpha 94.1 0.4 8.7E-06 55.2 11.4 64 238-305 208-271 (808)
43 PF13090 PP_kinase_C: Polyphos 92.9 0.26 5.6E-06 51.4 6.8 94 284-431 51-151 (352)
44 PF09565 RE_NgoFVII: NgoFVII r 92.0 1.4 3E-05 45.4 10.8 41 386-428 78-123 (296)
45 KOG1329 Phospholipase D1 [Lipi 91.1 1.1 2.3E-05 51.9 9.6 64 237-307 301-364 (887)
46 PLN03008 Phospholipase D delta 85.8 3.3 7.2E-05 48.2 9.0 27 387-413 370-404 (868)
47 COG0855 Ppk Polyphosphate kina 85.8 2 4.3E-05 48.2 7.0 92 284-430 385-484 (696)
48 COG3886 Predicted HKD family n 78.4 20 0.00043 34.6 9.7 52 238-308 38-90 (198)
49 PF06087 Tyr-DNA_phospho: Tyro 77.7 1.6 3.5E-05 47.6 2.7 41 384-425 344-401 (443)
50 PF11495 Regulator_TrmB: Archa 74.5 9.8 0.00021 37.7 7.1 51 237-307 8-58 (233)
51 KOG0149 Predicted RNA-binding 56.3 5.5 0.00012 39.4 1.2 64 2-70 23-94 (247)
52 KOG3964 Phosphatidylglycerolph 51.6 31 0.00067 36.9 5.8 56 238-309 38-93 (469)
53 PF06087 Tyr-DNA_phospho: Tyro 38.5 22 0.00048 38.9 2.5 36 387-425 100-139 (443)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=2.2e-135 Score=1115.85 Aligned_cols=540 Identities=76% Similarity=1.284 Sum_probs=492.3
Q ss_pred CCCchHHHHhhccCCCcEEEEecCCCCCccchhhhc-----------cccccccCccceEEEcCCCCCCCCceEEEECcc
Q 009218 1 MATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGI 69 (540)
Q Consensus 1 ~~~~d~~~~~~~~~~~V~~~l~~~~~~~~~~~~~~~-----------~~~~~~~hHqK~vVID~~~~~~~~~~vAFvGGi 69 (540)
|+||||||++||++++|+|+||||+++.+++++++. .++++|+||||+||||+++++++|++||||||+
T Consensus 318 m~thdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGi 397 (868)
T PLN03008 318 MGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGL 397 (868)
T ss_pred cccccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcce
Confidence 899999999999999999999999999999999874 567899999999999998888899999999999
Q ss_pred cCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhc
Q 009218 70 DLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKR 149 (540)
Q Consensus 70 Dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~ 149 (540)
|||+|||||++|+++++++++|++||+||++.++.+.|++||||+||+|+||||++|+.+|.+||+++++..++..++++
T Consensus 398 DLc~gRwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~ 477 (868)
T PLN03008 398 DLCDGRYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKG 477 (868)
T ss_pred eccCCccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccc
Confidence 99999999999999999999999999999988777789999999999999999999999999999999986544445566
Q ss_pred cccccchhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhh
Q 009218 150 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 229 (540)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~ 229 (540)
.+.|.++.|+++.++++++.|+....+.+....|...+.+...+.+++++|.||+|||+++|++++||..+++++.++|+
T Consensus 478 ~~~~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~ 557 (868)
T PLN03008 478 KTHWQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLE 557 (868)
T ss_pred ccccccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccc
Confidence 66788899999999998887653221111111111111111111356789999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 009218 230 CAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 309 (540)
Q Consensus 230 ~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~p 309 (540)
||+++.+|+||++||+++|++||||||||||||++++++|+++++.++.|+|+++|+++|+++++++++|+|+||+|++|
T Consensus 558 ~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~p 637 (868)
T PLN03008 558 CAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWP 637 (868)
T ss_pred cccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCccccccccccccee
Q 009218 310 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYV 389 (540)
Q Consensus 310 eg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 389 (540)
||+++++++|.||+||++||++||.+|.++|+++|.+.+|.+||+||||++++...+..++.+++.+..+++.++++|||
T Consensus 638 eG~~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYv 717 (868)
T PLN03008 638 EGDPKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYV 717 (868)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEE
Confidence 99999999999999999999999999999999988777899999999999998875555566677777788888999999
Q ss_pred eeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcccccccCCCCccHHHHHHHHHHHhcCCCcccccCCCchH
Q 009218 390 HAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEEPESLD 469 (540)
Q Consensus 390 HSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~p~s~~ 469 (540)
|||+|||||++++|||||||+|||.++||||+++.+++|.++|+++.+.++|+|++||++||+||||+.++.|.+|+|+|
T Consensus 718 HsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~e 797 (868)
T PLN03008 718 HAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLE 797 (868)
T ss_pred eeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHH
Confidence 99999999999999999999999999999999999999999987667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCcceeeCccccCCCCCccCCCCCCCCCCCCCccccccCCCCCCCCCC
Q 009218 470 CIRKVNQIAGENWGRFTAMEFTPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHSMSLPDMLTT 540 (540)
Q Consensus 470 ~~~~~~~~a~~nw~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~g~~~fp~~~~~~~~~~~~~~~~~~~~ 540 (540)
|++++|++|++||++|+++++.+|+|||+.||+.|+.||++++|||+|+||||+|+|||++|.+||++|||
T Consensus 798 cv~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 798 CLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3.4e-127 Score=1051.83 Aligned_cols=506 Identities=52% Similarity=0.930 Sum_probs=458.3
Q ss_pred CCCchHHHHhhccCCCcEEEEecCCCCCccchhhhccccccccCccceEEEcCCCCC---CCCceEEEECcccCCCCCCC
Q 009218 1 MATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG---NNRKITAFIGGIDLCDGRYD 77 (540)
Q Consensus 1 ~~~~d~~~~~~~~~~~V~~~l~~~~~~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~---~~~~~vAFvGGiDl~~~R~D 77 (540)
|.|||++|++||++++|+|+||+|.++.+.++++++.+++.+|||||+||||+++++ ++|+++|||||||||+||||
T Consensus 287 m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWD 366 (808)
T PLN02270 287 MATHDEETENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYD 366 (808)
T ss_pred cccCHHHHHHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCccc
Confidence 889999999999999999999999999888899888899999999999999997543 58999999999999999999
Q ss_pred CCCccccccccccccCCCCCCCCCC---CCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhcccccc
Q 009218 78 TPEHRLFRDLDTVFKDDFHNPTYPI---GTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR 154 (540)
Q Consensus 78 t~~H~l~~~~~~~~~~d~~n~~~~~---~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~ 154 (540)
|++|++|+++++.|.+||+||+|.+ +.++||+||||+||+|+||+|++|+.+|.+||+.+++..
T Consensus 367 T~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~------------- 433 (808)
T PLN02270 367 TPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKD------------- 433 (808)
T ss_pred CccccccccccccccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCcc-------------
Confidence 9999999999999999999998863 678899999999999999999999999999999988753
Q ss_pred chhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccc
Q 009218 155 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV 234 (540)
Q Consensus 155 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~ 234 (540)
.+..+.++++++.|+. | ..+ +++.++|+||+|||++.+++++||..+++++++|++++++.
T Consensus 434 --ll~~~~~~~~~~~P~~----------~--~~~-----p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~ 494 (808)
T PLN02270 434 --ILVQLRELEDVIIPPS----------P--VMF-----PDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDN 494 (808)
T ss_pred --chhhhcccccccCCCC----------c--ccC-----CCcCCccccceeecccchhhccCCCCcchhhhcceeccCCC
Confidence 1222333333322211 0 011 24567899999999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCcc----ccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCC
Q 009218 235 VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSY----KNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE 310 (540)
Q Consensus 235 ~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~----~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~pe 310 (540)
..++||+.+|++||++||||||||||||++++++|+++ ++.++.|+|+++|+++|+++++++++|+||||+|++||
T Consensus 495 ~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~pe 574 (808)
T PLN02270 495 IIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPE 574 (808)
T ss_pred chhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCC
Confidence 88999999999999999999999999999999999755 67899999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCC-----cccccCCCCCcccccccccc
Q 009218 311 GDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP-----KDVLANNGDKVSDSQKNQRF 385 (540)
Q Consensus 311 g~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 385 (540)
|.+++.++|.||+||++||++||.+|+++|+++|+..+|.+||+||||+|++... |...|.+++.+..+++.+++
T Consensus 575 G~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~ 654 (808)
T PLN02270 575 GIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRF 654 (808)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhccce
Confidence 9999999999999999999999999999999999866899999999999998652 23344556666777888889
Q ss_pred cceeeeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcccccccCCCCccHHHHHHHHHHHhcCCCcccccCC
Q 009218 386 MIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEEP 465 (540)
Q Consensus 386 ~iyvHSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~p 465 (540)
+||||||+|||||++++|||||||+|||.|+|||||+|..++|.++.. ...++++|++||++||+||||+.++.|.+|
T Consensus 655 ~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~--~~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p 732 (808)
T PLN02270 655 MIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHLST--RQPARGQIHGFRMSLWYEHLGMLDETFLDP 732 (808)
T ss_pred eEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCcccccc--ccchHHHHHHHHHHHHHHHhCCChhHhhCC
Confidence 999999999999999999999999999999999999999999987632 346789999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhhhhhhhccc-CCCCcceeeCccccCCCCCccCCCCCCCCCCCCCccccccCCCCCCCCCC
Q 009218 466 ESLDCIRKVNQIAGENWGRFTAMEF-TPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHSMSLPDMLTT 540 (540)
Q Consensus 466 ~s~~~~~~~~~~a~~nw~~~~~~~~-~~~~g~L~~~p~~~~~~~~~~~~~g~~~fp~~~~~~~~~~~~~~~~~~~~ 540 (540)
+|+||++++|++|++||++|+++++ .+|+|||++||+.|+.||++++|||+|+||||+|+|||++|.+||++|||
T Consensus 733 ~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 733 ESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPGTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 9999999999999999999999999 48999999999999999999999999999999999999999999999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=7.3e-127 Score=1047.90 Aligned_cols=480 Identities=47% Similarity=0.864 Sum_probs=423.9
Q ss_pred CCCchHHHHhhccCCCcEEEEecCCCCCccchhhhccccccccCccceEEEcCCCCC--CCCceEEEECcccCCCCCCCC
Q 009218 1 MATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASG--NNRKITAFIGGIDLCDGRYDT 78 (540)
Q Consensus 1 ~~~~d~~~~~~~~~~~V~~~l~~~~~~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~--~~~~~vAFvGGiDl~~~R~Dt 78 (540)
|+|||+++.+||++++|+|+|||++.. .+++.|+||||+||||+++++ .+|+++|||||||||+|||||
T Consensus 266 m~th~~~~~~~f~h~~V~~~l~pr~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT 336 (758)
T PLN02352 266 MGTHDEDAFAYFKHTKVVCKLCPRLHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDT 336 (758)
T ss_pred cccchHHHHhhccCCceEEeecccccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCC
Confidence 789999999999999999999998763 346789999999999997543 689999999999999999999
Q ss_pred CCcccccccccc-ccCCCCCCCCC---CCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhcccccc
Q 009218 79 PEHRLFRDLDTV-FKDDFHNPTYP---IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR 154 (540)
Q Consensus 79 ~~H~l~~~~~~~-~~~d~~n~~~~---~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~ 154 (540)
++|++++++++. +++||+|+.|. .+.++||+|||||||+|+||||+||++||+||||++++..
T Consensus 337 ~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~------------- 403 (758)
T PLN02352 337 EEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPS------------- 403 (758)
T ss_pred ccCCcccccccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcc-------------
Confidence 999999999986 56899999887 3678899999999999999999999999999999987652
Q ss_pred chhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccc
Q 009218 155 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV 234 (540)
Q Consensus 155 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~ 234 (540)
.+....+++++.. +|.. ...+.++|+||++||++.+++++||.. .
T Consensus 404 --~l~p~~~~~~~~~------------~p~~-------~~~~~~~w~VQv~RSid~~sa~~~P~~--------------~ 448 (758)
T PLN02352 404 --VLVPTSSIRNLVH------------QPGS-------SESNNRNWKVQVYRSIDHVSASHMPRN--------------L 448 (758)
T ss_pred --ccCCccccccccc------------CCCC-------CcccCCcccceEEEecCccccccCCCC--------------C
Confidence 1111111111111 0110 012457899999999999999888852 2
Q ss_pred cchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCC
Q 009218 235 VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPK 314 (540)
Q Consensus 235 ~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~ 314 (540)
..|+||++||++||++||||||||||||++++++|+++++.++.|+|+++|+++|+++++++++|+|+||+|++|+|.++
T Consensus 449 ~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e 528 (758)
T PLN02352 449 PVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILIPMWPEGVPE 528 (758)
T ss_pred chhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcc
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCC-----cccccCCCCCccccccccccccee
Q 009218 315 TNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAP-----KDVLANNGDKVSDSQKNQRFMIYV 389 (540)
Q Consensus 315 ~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~iyv 389 (540)
+.++|.||+||++||+++|.+|.++|+++|.+.+|.|||+||||++++... +...|.+.+.+..+++.++++|||
T Consensus 529 ~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~~~~~~~~~rr~~IYV 608 (758)
T PLN02352 529 SEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGEFVPPYSPHQKTQYWNAQKNRRFMVYV 608 (758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCccccccCCCCCchhhhcccccceeEEE
Confidence 999999999999999999999999999999866899999999999997652 122333444445566667789999
Q ss_pred eeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcccccccCCCCccHHHHHHHHHHHhcCCCcccccCCCchH
Q 009218 390 HAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEEPESLD 469 (540)
Q Consensus 390 HSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~p~s~~ 469 (540)
|||+|||||++++|||||||+|||.|+|||||++++++++... ....+++|++||++||+||||+.++.|.+|+|+|
T Consensus 609 HSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~---~~~~~~~i~~~R~~L~~EHLG~~~~~f~~p~s~e 685 (758)
T PLN02352 609 HSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGT---NTNNPRDIQAYRMSLWYEHTGLDEESFLEPESLE 685 (758)
T ss_pred eeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCC---CcccchHHHHHHHHHHHHHhCCCHHHhcCCCCHH
Confidence 9999999999999999999999999999999999999997652 2344689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCc-ceeeCccccCCCCCccCC-CCCCCCCCCCCccccccCCCCCCCCCC
Q 009218 470 CIRKVNQIAGENWGRFTAMEFTPLQG-HLLRYPLQVDADGTVSPL-PGYEQFPDAGGKIIGVHSMSLPDMLTT 540 (540)
Q Consensus 470 ~~~~~~~~a~~nw~~~~~~~~~~~~g-~L~~~p~~~~~~~~~~~~-~g~~~fp~~~~~~~~~~~~~~~~~~~~ 540 (540)
|++++|++|++||++|++|++.+|+| ||++||+.|+.||++++| ||+++||||+|+|||++|.+||++|||
T Consensus 686 c~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 686 CVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred HHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCCCCcCCCCCCCceeccccccCCccccC
Confidence 99999999999999999999999999 999999999999999999 699999999999999999999999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-117 Score=969.74 Aligned_cols=471 Identities=51% Similarity=0.887 Sum_probs=423.1
Q ss_pred CCchHHHHhhccCCCcEEEEecCCCCCccchhhhccccccccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCc
Q 009218 2 ATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEH 81 (540)
Q Consensus 2 ~~~d~~~~~~~~~~~V~~~l~~~~~~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H 81 (540)
+|||++|..||+|++|+|++||+..+++. .++|+||||+||||++ +|||||+|||+|||||++|
T Consensus 373 ~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~--------v~fvGGlDLC~GRYDT~eH 436 (887)
T KOG1329|consen 373 NSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE--------VAFVGGLDLCDGRYDTPEH 436 (887)
T ss_pred CchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--------eccccceeccccccCCccc
Confidence 69999999999999999999999877442 3689999999999998 9999999999999999999
Q ss_pred cccccccccccCCCCCCCCC-----CCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhccccccch
Q 009218 82 RLFRDLDTVFKDDFHNPTYP-----IGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 156 (540)
Q Consensus 82 ~l~~~~~~~~~~d~~n~~~~-----~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~~~ 156 (540)
+||+++++++++||+||+|. ++.++||||||||||+|.||+|+||++||+||||++...+. . .++
T Consensus 437 ~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-------~---~~~ 506 (887)
T KOG1329|consen 437 PLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-------P---YDD 506 (887)
T ss_pred cccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-------C---CCc
Confidence 99999999999999999987 67899999999999999999999999999999999876431 0 011
Q ss_pred hhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccc
Q 009218 157 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVI 236 (540)
Q Consensus 157 ~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 236 (540)
. ++.+++++.. ..|. ...+.+++.|.+|++||++.+++.+ ++.+..+|++|++.+.+
T Consensus 507 ~------~p~L~p~~~~-------~~~~------~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~ 563 (887)
T KOG1329|consen 507 S------LPLLLPISDI-------TGPS------EPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEI 563 (887)
T ss_pred c------ceeecChhhh-------cCCC------CccccccccccccceeeccCCcccc----hHHhhhhcccccCCCch
Confidence 2 2222322211 0111 1124567889999999999987765 56677889999999889
Q ss_pred hHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCC--CC--C
Q 009218 237 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP--EG--D 312 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~p--eg--~ 312 (540)
|.||++||+++|++||||||||||||+++++.|. ...|.++++|+++|++|+++++.|+||||+|+|| || .
T Consensus 564 e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~-----~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~ 638 (887)
T KOG1329|consen 564 EDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWD-----SVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDT 638 (887)
T ss_pred HHHHHHHHHHHHHhccceEEEeeeeEEeeccCCC-----cccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCC
Confidence 9999999999999999999999999999998764 4568899999999999999999999999999999 99 8
Q ss_pred CCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccCCccccccCCcccCCCcccccCCCCCcccccccccccceeee
Q 009218 313 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVD-AHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHA 391 (540)
Q Consensus 313 ~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~-~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 391 (540)
|+++++|+|||||++||+|||++|+++|++.|++ .+|.+|++|+|+++++.. +++.++++|||||
T Consensus 639 p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~--------------~~~~~~emIYVHs 704 (887)
T KOG1329|consen 639 PGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQ--------------AQRLRREMIYVHS 704 (887)
T ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccc--------------cccceEEEEEEee
Confidence 8899999999999999999999999999999997 567788888998877531 3456789999999
Q ss_pred EEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcccccccCCCCccHHHHHHHHHHHhcCCCcccccCCCchHHH
Q 009218 392 KGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHLGMLDNCFEEPESLDCI 471 (540)
Q Consensus 392 KlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlG~~~~~~~~p~s~~~~ 471 (540)
|+|||||++++|||||||+|||.|+|||||||+++||.+++..+++.+.+|+++||++||+||||+.++.+++|++.+|+
T Consensus 705 K~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~ 784 (887)
T KOG1329|consen 705 KLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECE 784 (887)
T ss_pred eeEEecCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhh
Confidence 99999999999999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhcccCCCCcceeeCccccCCCCCccCCCCCCCCCCCCCccccccCCCCCCCCCC
Q 009218 472 RKVNQIAGENWGRFTAMEFTPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHSMSLPDMLTT 540 (540)
Q Consensus 472 ~~~~~~a~~nw~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~g~~~fp~~~~~~~~~~~~~~~~~~~~ 540 (540)
+.++.+.+++|..|+++..+..+|||+.||+++..+|++.++||.++|||++|++.|.++..+|++||+
T Consensus 785 dpv~d~~~~~W~~~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 785 DPVRDLFEDLWQRYAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=4.4e-84 Score=721.57 Aligned_cols=428 Identities=32% Similarity=0.493 Sum_probs=324.2
Q ss_pred ccccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCccccccccccc-cCCCCCCCCC-------------CCCC
Q 009218 40 TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVF-KDDFHNPTYP-------------IGTK 105 (540)
Q Consensus 40 ~~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H~l~~~~~~~~-~~d~~n~~~~-------------~~~~ 105 (540)
.+||||||+||||++ |||+||+|||.|||||++|++.|....+| ++||.||+.. ++..
T Consensus 443 ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~ 514 (1068)
T PLN02866 443 YLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRRK 514 (1068)
T ss_pred ccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccccccccc
Confidence 578999999999998 99999999999999999999988766655 5799999753 3466
Q ss_pred CCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhccccc------------c-------------c-----
Q 009218 106 APREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHW------------R-------------D----- 155 (540)
Q Consensus 106 ~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~------------~-------------~----- 155 (540)
.||||||||||+|+||+|+||+++|++|||.+++.+.- -++...| . .
T Consensus 515 ~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~---~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 591 (1068)
T PLN02866 515 YPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAP---NEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKG 591 (1068)
T ss_pred CCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999998865310 0000000 0 0
Q ss_pred ----hh---hhhhcccccccCccccccC-----------CCCccC--------------C---C----CC----------
Q 009218 156 ----DY---LIKIGRISWILSPELSLKT-----------NGTTIV--------------P---R----DD---------- 186 (540)
Q Consensus 156 ----~~---l~~~~~~~~~l~~~~~~~~-----------~~~~~~--------------P---~----~~---------- 186 (540)
+. ....+.+|.+++++..... ..++.. | - ++
T Consensus 592 ~~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 671 (1068)
T PLN02866 592 IARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKM 671 (1068)
T ss_pred ccccccccccccccccccCCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0001122333332110000 000000 0 0 00
Q ss_pred ------------ccc-------------ccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccchHHHH
Q 009218 187 ------------NVV-------------RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQ 241 (540)
Q Consensus 187 ------------~~~-------------~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~ 241 (540)
.+. ........++|.|||+||++.||+... .+|+||+
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~~------------------~~E~SI~ 733 (1068)
T PLN02866 672 SSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGTS------------------QVEESIH 733 (1068)
T ss_pred cccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCCC------------------chHHHHH
Confidence 000 000011245799999999988875321 1589999
Q ss_pred HHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCC--CCC---CCc
Q 009218 242 TAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDP---KTN 316 (540)
Q Consensus 242 ~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~pe--g~~---~~~ 316 (540)
+||+++|++||||||||||||+++..+ +..+.|+|+.+|+++|++|+++++.|+|+||+|++|+ |.. ++.
T Consensus 734 ~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~ 808 (1068)
T PLN02866 734 AAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAA 808 (1068)
T ss_pred HHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccch
Confidence 999999999999999999999998532 3467899999999999999999999999999999996 433 345
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHc-CCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEE
Q 009218 317 TVQEILFWQSQTMQMMYSVVAQELREM-QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMI 395 (540)
Q Consensus 317 ~~~~il~~~~~t~~~~~~~i~~~L~~~-Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 395 (540)
++++||+||++||++++.+|+++|+++ |. +|.||++||+|++++... ++.+ ..+++||||||+||
T Consensus 809 svr~Im~~Q~~tI~rG~~Si~~~L~~~~g~--~p~dYisf~~LRn~~~l~------~~~~------~vteqIYVHsK~~I 874 (1068)
T PLN02866 809 SVRAIMHWQYRTICRGKNSILHNLYDLLGP--KTHDYISFYGLRAYGRLF------EGGP------LATSQIYVHSKIMI 874 (1068)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHeEeeeccccccccc------CCCc------ccceeeEEEeeEEE
Confidence 799999999999999999999999984 54 678999999999976531 1111 23458999999999
Q ss_pred EeCeEEEecCcccccccCCCCCCcceEEEEecCCccccccc---CCCCccHHHHHHHHHHHhcCCCc---ccccCCCchH
Q 009218 396 VDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKL---KHPHGQIYGYRKSLWSEHLGMLD---NCFEEPESLD 469 (540)
Q Consensus 396 VDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~~~~~~---~~~~~~~~~lR~~Lw~eHlG~~~---~~~~~p~s~~ 469 (540)
|||++++|||||||+|||.|++|||++++++|++++....+ -.+++++++||++||+||||+.. +.+.||.+++
T Consensus 875 vDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~DP~~d~ 954 (1068)
T PLN02866 875 VDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIIDPVCDT 954 (1068)
T ss_pred EcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccCCccHH
Confidence 99999999999999999999999999999999987633222 24567899999999999999975 3478999999
Q ss_pred HHH-HHHHHHHhhhhhh---------------------h----------------------------------hcccCCC
Q 009218 470 CIR-KVNQIAGENWGRF---------------------T----------------------------------AMEFTPL 493 (540)
Q Consensus 470 ~~~-~~~~~a~~nw~~~---------------------~----------------------------------~~~~~~~ 493 (540)
+++ .|+..|..|...| . .++++.+
T Consensus 955 ~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~~l~~I 1034 (1068)
T PLN02866 955 TYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPMERLKSV 1034 (1068)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHHHHHhhc
Confidence 996 5899999987433 1 1336789
Q ss_pred CcceeeCccccCCCCCccCCCC
Q 009218 494 QGHLLRYPLQVDADGTVSPLPG 515 (540)
Q Consensus 494 ~g~L~~~p~~~~~~~~~~~~~g 515 (540)
+||||.||+.|++++.+.|--+
T Consensus 1035 ~G~lV~fPL~Fl~~E~L~p~~~ 1056 (1068)
T PLN02866 1035 RGHLVSFPLDFMCQEDLRPVFN 1056 (1068)
T ss_pred eEEEEechhhhhhhccCCCCcC
Confidence 9999999999999998765544
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=4.3e-38 Score=343.34 Aligned_cols=255 Identities=25% Similarity=0.361 Sum_probs=184.4
Q ss_pred CCCcEE-EEecCCCCCcc--chhhhc------------------cccccccCccceEEEcCCCCCCCCceEEEECcccCC
Q 009218 14 HSSVNC-VLAPRYASSKL--SYFKQQ------------------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC 72 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~~~~--~~~~~~------------------~~~~~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~ 72 (540)
.+||+| +|+|..|+... ++++.+ ....++|||||++|||++ +||+||+|++
T Consensus 191 ~rGV~VRiL~D~~Gs~~~~~~~~~~L~~aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VIDg~--------ia~~GG~Ni~ 262 (509)
T PRK12452 191 KDGVIVRFLYDGLGSNTLRRRFLQPMKEAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDGE--------IGFTGGLNVG 262 (509)
T ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHhCCeEEEEecCcccccccccccCCCCCeEEEEcCC--------EEEeCCcccc
Confidence 689999 88998887533 233322 114578999999999998 9999999999
Q ss_pred CCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhcccc
Q 009218 73 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSH 152 (540)
Q Consensus 73 ~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~ 152 (540)
+ .|... .....+|||+|++++||+|.+++..|.++|+.+++... . ..
T Consensus 263 d-~y~~~-------------------------~~~~~~WrD~~~~i~Gp~V~~l~~~F~~dW~~~~~~~~-----~--~~ 309 (509)
T PRK12452 263 D-EYLGR-------------------------SKKFPVWRDSHLKVEGKALYKLQAIFLEDWLYASSGLN-----T--YS 309 (509)
T ss_pred h-hhcCC-------------------------CCCCCCceEEEEEEECHHHHHHHHHHHHHHHHhhCccc-----c--cc
Confidence 9 45331 12346899999999999999999999999998765310 0 00
Q ss_pred ccchhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccc
Q 009218 153 WRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAK 232 (540)
Q Consensus 153 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~ 232 (540)
|. .. ..+ ...|+. ....+...+|++.| + |..
T Consensus 310 ~~--------~~---~~~---------~~~~~~--------~~~~~~~~~q~~~s---g-----p~~------------- 340 (509)
T PRK12452 310 WD--------PF---MNR---------QYFPGK--------EISNAEGAVQIVAS---G-----PSS------------- 340 (509)
T ss_pred cc--------cc---cch---------hcCCCc--------cccCCCeEEEEEeC---C-----CCc-------------
Confidence 00 00 000 001110 00123457899887 3 211
Q ss_pred cccchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCC
Q 009218 233 DVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD 312 (540)
Q Consensus 233 ~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~ 312 (540)
.+.++.++|+++|.+||++|||+||||+++ ..+..+|..|++ +||+|+||+|..++
T Consensus 341 ---~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd-----------------~~l~~aL~~Aa~--rGV~Vrii~p~~~D-- 396 (509)
T PRK12452 341 ---DDKSIRNTLLAVMGSAKKSIWIATPYFIPD-----------------QETLTLLRLSAI--SGIDVRILYPGKSD-- 396 (509)
T ss_pred ---hhHHHHHHHHHHHHHhhhEEEEECCccCCC-----------------HHHHHHHHHHHH--cCCEEEEEcCCCCC--
Confidence 146899999999999999999999999975 246666766654 88999999997432
Q ss_pred CCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeE
Q 009218 313 PKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAK 392 (540)
Q Consensus 313 ~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSK 392 (540)
..++++..++ +++.|.++|++++ .+ .+.++|+|
T Consensus 397 ------~~~~~~a~~~-------~~~~L~~aGv~I~--------~y--------------------------~~~~lHaK 429 (509)
T PRK12452 397 ------SIISDQASQS-------YFTPLLKAGASIY--------SY--------------------------KDGFMHAK 429 (509)
T ss_pred ------hHHHHHHHHH-------HHHHHHHcCCEEE--------Ee--------------------------cCCCeeee
Confidence 3445555544 4788999999762 11 14689999
Q ss_pred EEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009218 393 GMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 393 lmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
+|||||++++|||+|||.||+. .+.|+++.++|++.+
T Consensus 430 ~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~~ 466 (509)
T PRK12452 430 IVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESETV 466 (509)
T ss_pred EEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHHH
Confidence 9999999999999999999998 459999999987643
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1e-36 Score=331.64 Aligned_cols=250 Identities=24% Similarity=0.392 Sum_probs=182.1
Q ss_pred CCCcEE-EEecCCCCCcc--c-hhhhc-------------------cccccccCccceEEEcCCCCCCCCceEEEECccc
Q 009218 14 HSSVNC-VLAPRYASSKL--S-YFKQQ-------------------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGID 70 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~~~~--~-~~~~~-------------------~~~~~~~hHqK~vVID~~~~~~~~~~vAFvGGiD 70 (540)
.+||+| +|+|..|+..+ + +++.+ ....++|+|+|++|||++ +||+||+|
T Consensus 167 ~rGV~VriL~D~~Gs~~~~~~~~~~~L~~~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VIDg~--------ia~~Gg~N 238 (483)
T PRK01642 167 KRGVRVRLLYDSIGSFAFFRSPYPEELRNAGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVIDGY--------IAYTGSMN 238 (483)
T ss_pred HCCCEEEEEEECCCCCCCCcHHHHHHHHHCCCEEEEecCCCcccccccccccccCceEEEEcCC--------EEEeCCcc
Confidence 689999 88898887433 2 33322 112356899999999998 99999999
Q ss_pred CCC-CCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhc
Q 009218 71 LCD-GRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKR 149 (540)
Q Consensus 71 l~~-~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~ 149 (540)
+++ .+... .....+|||+|++++||+|.+++..|.+.|+.+++...
T Consensus 239 i~d~~y~~~--------------------------~~~~~~w~D~~~~i~Gp~v~~l~~~F~~dW~~~~~~~~------- 285 (483)
T PRK01642 239 VVDPEYFKQ--------------------------DPGVGQWRDTHVRIEGPVVTALQLIFAEDWEWETGERI------- 285 (483)
T ss_pred cCCHHHhCC--------------------------CCCCCCcEEEEEEEEcHHHHHHHHHHHHHHHHHhCccc-------
Confidence 999 44321 11346899999999999999999999999998765410
Q ss_pred cccccchhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhh
Q 009218 150 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 229 (540)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~ 229 (540)
.. .. +.. ..++ ....+...+|++.| + |..
T Consensus 286 --------~~---~~-----~~~--------~~~~---------~~~~~~~~~qi~~s---g-----P~~---------- 314 (483)
T PRK01642 286 --------LP---PP-----PDV--------LIMP---------FEEASGHTVQVIAS---G-----PGD---------- 314 (483)
T ss_pred --------CC---CC-----ccc--------ccCC---------ccCCCCceEEEEeC---C-----CCC----------
Confidence 00 00 000 0000 01122347899876 3 221
Q ss_pred ccccccchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 009218 230 CAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 309 (540)
Q Consensus 230 ~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~p 309 (540)
.+..++++|+++|.+||++|||++|||+++ ..+..+|..|++ +||+|+||+|..+
T Consensus 315 ------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~-----------------~~i~~aL~~Aa~--rGV~Vril~p~~~ 369 (483)
T PRK01642 315 ------PEETIHQFLLTAIYSARERLWITTPYFVPD-----------------EDLLAALKTAAL--RGVDVRIIIPSKN 369 (483)
T ss_pred ------hhhHHHHHHHHHHHHhccEEEEEcCCcCCC-----------------HHHHHHHHHHHH--cCCEEEEEeCCCC
Confidence 146799999999999999999999999974 246677766654 8899999999753
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCccccccccccccee
Q 009218 310 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYV 389 (540)
Q Consensus 310 eg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 389 (540)
+ ..++++..++ +++.|.++|++++ .+ ...++
T Consensus 370 d--------~~~~~~~~~~-------~~~~L~~~Gv~I~--------~y--------------------------~~~~~ 400 (483)
T PRK01642 370 D--------SLLVFWASRA-------FFTELLEAGVKIY--------RY--------------------------EGGLL 400 (483)
T ss_pred C--------cHHHHHHHHH-------HHHHHHHcCCEEE--------Ee--------------------------CCCce
Confidence 2 2445555554 3678889999752 21 14589
Q ss_pred eeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009218 390 HAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 390 HSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
|+|+|||||++++|||+|+|.||+. .|.|+++.++|++++
T Consensus 401 HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~~ 440 (483)
T PRK01642 401 HTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGFA 440 (483)
T ss_pred EeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHHH
Confidence 9999999999999999999999998 459999999998654
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=1.1e-35 Score=316.06 Aligned_cols=263 Identities=21% Similarity=0.291 Sum_probs=184.1
Q ss_pred CCCcEE-EEecCCCCCccc--hhhhc-----c------c------cc--cccCccceEEEcCCCCCCCCceEEEECcccC
Q 009218 14 HSSVNC-VLAPRYASSKLS--YFKQQ-----I------V------GT--IFTHHQKCVLVDTQASGNNRKITAFIGGIDL 71 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~~~~~--~~~~~-----~------~------~~--~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl 71 (540)
++||+| +|+|.+|+..++ +++.+ . . .. +.++|+|++|||++ +|||||+|+
T Consensus 59 ~rGV~Vril~D~~gs~~~~~~~~~~L~~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~--------~a~vGg~N~ 130 (411)
T PRK11263 59 QRGVKVEVLVDGYGSPDLSDEFVNELTAAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDGR--------IAFVGGINY 130 (411)
T ss_pred HCCCEEEEEEECCCCCCCCHHHHHHHHHCCeEEEEeCCcccccccccccccCCcceEEEEcCC--------EEEEcCeEc
Confidence 689999 888988875432 33222 0 0 11 23899999999998 999999999
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhccc
Q 009218 72 CDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVS 151 (540)
Q Consensus 72 ~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~ 151 (540)
++.++.. ....+|+|++++|+||+|.++...|.+.|....... .
T Consensus 131 ~~~~~~~---------------------------~g~~~w~D~~v~i~Gp~V~~l~~~f~~~w~~~~~~~---------~ 174 (411)
T PRK11263 131 SADHLSD---------------------------YGPEAKQDYAVEVEGPVVADIHQFELEALPGQSAAR---------R 174 (411)
T ss_pred hHhhccc---------------------------cCCCCceEEEEEEECHHHHHHHHHHHHHHhhcccch---------h
Confidence 9844321 122479999999999999999999999997532110 0
Q ss_pred cccchhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhcc
Q 009218 152 HWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICA 231 (540)
Q Consensus 152 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~ 231 (540)
.|. +. +. .+. ....+...+|++.+ + |.
T Consensus 175 ~~~--------~~-----~~----------~~~---------~~~~g~~~~~~v~~---~-----p~------------- 201 (411)
T PRK11263 175 WWR--------RH-----HR----------AEE---------NRQPGEAQALLVWR---D-----NE------------- 201 (411)
T ss_pred hhc--------cc-----cc----------Ccc---------cCCCCCeEEEEEEC---C-----Cc-------------
Confidence 000 00 00 000 01124446777654 2 11
Q ss_pred ccccchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 009218 232 KDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEG 311 (540)
Q Consensus 232 ~~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg 311 (540)
.....|..+|+.+|.+||+.|||+||||+++ ..+..+|..|++ +||+|.||+|..|+
T Consensus 202 ---~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~-----------------~~l~~aL~~Aa~--RGV~V~ii~~~~~d- 258 (411)
T PRK11263 202 ---EHRDDIERHYLKALRQARREVIIANAYFFPG-----------------YRLLRALRNAAR--RGVRVRLILQGEPD- 258 (411)
T ss_pred ---chHHHHHHHHHHHHHHhceEEEEEecCcCCC-----------------HHHHHHHHHHHH--CCCEEEEEeCCCCC-
Confidence 0136799999999999999999999999974 246677776654 89999999996432
Q ss_pred CCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeee
Q 009218 312 DPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHA 391 (540)
Q Consensus 312 ~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHS 391 (540)
++++.+..+. +++.|+++|+++ |.+ ...++|+
T Consensus 259 -------~~~~~~a~~~-------~~~~Ll~~Gv~I--------~~y--------------------------~~~~lHa 290 (411)
T PRK11263 259 -------MPIVRVGARL-------LYNYLLKGGVQI--------YEY--------------------------CRRPLHG 290 (411)
T ss_pred -------cHHHHHHHHH-------HHHHHHHCCCEE--------EEe--------------------------cCCCcee
Confidence 3455555544 478899999975 222 1358999
Q ss_pred EEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcccccccCCCCccHHHHHHHHHHHhc
Q 009218 392 KGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHTWARKLKHPHGQIYGYRKSLWSEHL 455 (540)
Q Consensus 392 KlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHl 455 (540)
|+|||||++++|||+|||.|||. .|.|+++.++|++++ .++......++++|.
T Consensus 291 K~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a---------~~l~~~~~~~~~~~s 343 (411)
T PRK11263 291 KVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN---------QTLRDNLNGLIAADC 343 (411)
T ss_pred EEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH---------HHHHHHHHHHHHhhC
Confidence 99999999999999999999998 459999999998764 233444555555553
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.97 E-value=1.7e-29 Score=271.83 Aligned_cols=260 Identities=27% Similarity=0.378 Sum_probs=176.8
Q ss_pred CCCcEE-EEecCCCC-Ccc--chhhhc--------------------cccccccCccceEEEcCCCCCCCCceEEEECcc
Q 009218 14 HSSVNC-VLAPRYAS-SKL--SYFKQQ--------------------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGI 69 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~-~~~--~~~~~~--------------------~~~~~~~hHqK~vVID~~~~~~~~~~vAFvGGi 69 (540)
+.||+| +++|..|+ ..+ +++... ....+.++|+|++|||+. ++|+||.
T Consensus 111 ~~gv~vr~l~D~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~H~K~~viD~~--------i~~vGg~ 182 (438)
T COG1502 111 KRGVEVRLLLDDIGSTRGLLKSLLALLKRAGIEEVRLFNPASPRPLRFRRLNRRLHRKIVVIDGK--------VAFVGGA 182 (438)
T ss_pred HcCCEEEEEEecCCCcccccHHHHHHHhcCCceEEEecCCcccccchhhhhhccccceEEEEcCC--------EEEecCc
Confidence 678999 88888887 222 111110 112456899999999998 9999999
Q ss_pred cCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhc
Q 009218 70 DLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKR 149 (540)
Q Consensus 70 Dl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~ 149 (540)
|+.+.++... ....+|+|+++++.||+|.++..+|.++|+.......
T Consensus 183 N~~d~y~~~~--------------------------~~~~~~~D~~~~~~g~~v~~l~~~f~~~w~~~~~~~~------- 229 (438)
T COG1502 183 NIGDEYFHKD--------------------------KGLGYWRDLHVRITGPAVADLARLFIQDWNLESGSSK------- 229 (438)
T ss_pred ccchhhhccC--------------------------cCcccceeeeEEEECHHHHHHHHHHHHHhhhccCcCc-------
Confidence 9999766421 0234999999999999999999999999998643310
Q ss_pred cccccchhhhhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhh
Q 009218 150 VSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLI 229 (540)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~ 229 (540)
. +.....+. .+.. . . ........+|++.+ ++..+.+.
T Consensus 230 -------~------~~~~~~~~----------~~~~--~--~--~~~~~~~~~~~~~~---~P~~~~~~----------- 266 (438)
T COG1502 230 -------P------LLALVRPP----------LQSL--S--L--LPVGRGSTVQVLSS---GPDKGLGS----------- 266 (438)
T ss_pred -------c------cccccccc----------cccc--c--c--cccccCcceEEEec---CCccccch-----------
Confidence 0 00000000 0000 0 0 00112223688876 32221111
Q ss_pred ccccccchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 009218 230 CAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 309 (540)
Q Consensus 230 ~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~p 309 (540)
....+...|+.+|.+|+++|+|++|||+++. ++..+|..+.+ +||+|.|++|..
T Consensus 267 ------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~~~al~~a~~--~Gv~V~ii~~~~- 320 (438)
T COG1502 267 ------ELIELNRLLLKAINSARESILIATPYFVPDR-----------------ELLAALKAAAR--RGVDVRIIIPSL- 320 (438)
T ss_pred ------hhhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HHHHHHHHHHh--cCCEEEEEeCCC-
Confidence 0112558999999999999999999999753 45666766653 889999999953
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCccccccccccc-ce
Q 009218 310 EGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFM-IY 388 (540)
Q Consensus 310 eg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-iy 388 (540)
+ .....++++..+. .+..|.+.|+++ |.+ .. .+
T Consensus 321 -~----~~d~~~~~~~~~~-------~~~~l~~~gv~i--------~~~--------------------------~~g~~ 354 (438)
T COG1502 321 -G----ANDSAIVHAAYRA-------YLKELLEAGVKV--------YEY--------------------------PGGAF 354 (438)
T ss_pred -C----CCChHHHHHHHHH-------HHHHHHHhCCEE--------EEe--------------------------cCCCc
Confidence 1 1223455555444 477888889864 322 12 49
Q ss_pred eeeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009218 389 VHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 389 vHSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
+|+|+|||||++++|||+|||.||+.+ |+|++++|+|+.+.
T Consensus 355 lH~K~~iiD~~~~~vGS~N~~~rS~~l--N~E~~~~i~d~~~~ 395 (438)
T COG1502 355 LHSKVMIIDDRTVLVGSANLDPRSLRL--NFEVGLVIEDPELA 395 (438)
T ss_pred ceeeEEEEcCCEEEEeCCcCCHhHHHH--hhhheeEEeCHHHH
Confidence 999999999999999999999999995 59999999998543
No 10
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.95 E-value=1.7e-26 Score=246.70 Aligned_cols=274 Identities=14% Similarity=0.167 Sum_probs=164.4
Q ss_pred CCCcEE-EEecCCCCCccchhhhc-----ccc-------ccccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCC
Q 009218 14 HSSVNC-VLAPRYASSKLSYFKQQ-----IVG-------TIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPE 80 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~~~~~~~~~~-----~~~-------~~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~ 80 (540)
.+||+| +|.|..+. ...+++.+ .+. ...++|+|++|||++ ++|+||.|+.. |+-+
T Consensus 72 ~rGV~VRIL~d~~~~-~~~~~~~L~~aGv~v~~~~~~~~~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~-- 139 (424)
T PHA02820 72 KRGVRVRIAVNKSNK-PLKDVELLQMAGVEVRYIDITNILGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT-- 139 (424)
T ss_pred HCCCEEEEEECCCCC-chhhHHHHHhCCCEEEEEecCCCCcccceeeEEEECCC--------EEEEeCCcCCh-hhhh--
Confidence 699999 88886532 22232222 111 235899999999998 99999999966 5532
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEE--eCHHHHHHHHHHHHHHHHhcccchhhhhhhccccccchhh
Q 009218 81 HRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL--DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYL 158 (540)
Q Consensus 81 H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v--~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~~~~l 158 (540)
..+|+++.+ +||+|.++...|.+.|+.+++.. ...|..
T Consensus 140 -----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~--------~~~~~~--- 179 (424)
T PHA02820 140 -----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL--------PYNWKN--- 179 (424)
T ss_pred -----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC--------CCcccc---
Confidence 124677777 79999999999999999765321 000000
Q ss_pred hhhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccchH
Q 009218 159 IKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDK 238 (540)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~ 238 (540)
.++ . .++...+. . ....+....|++.+ ++..-.+. ...
T Consensus 180 ----~~~----~----------~~~~~~p~--~--~~~~~~~~~~~~ss---sP~~~~~~-----------------~r~ 217 (424)
T PHA02820 180 ----FYP----L----------YYNTDHPL--S--LNVSGVPHSVFIAS---APQQLCTM-----------------ERT 217 (424)
T ss_pred ----ccc----c----------ccccCCCc--c--cccCCccceEEEeC---CChhhcCC-----------------CCC
Confidence 000 0 00100000 0 00011112344443 21100000 012
Q ss_pred HHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchh
Q 009218 239 SIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTV 318 (540)
Q Consensus 239 sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~ 318 (540)
...++|+.+|.+||++|||+++||+|.... .+. ...+. ..+..+|.+++ ..|||+|+||+|.++.. ..
T Consensus 218 ~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~-~~~---~~~yw--~~i~~AL~~AA-~~RGV~VriLvp~~~d~----~~- 285 (424)
T PHA02820 218 NDLTALLSCIRNASKFVYVSVMNFIPIIYS-KAG---KILFW--PYIEDELRRAA-IDRKVSVKLLISCWQRS----SF- 285 (424)
T ss_pred chHHHHHHHHHHHhhEEEEEEccccceeec-cCC---cccch--HHHHHHHHHHH-HhCCCEEEEEEeccCCC----Cc-
Confidence 357899999999999999999999987210 000 00000 24556665422 24899999999987542 11
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEeC
Q 009218 319 QEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDD 398 (540)
Q Consensus 319 ~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD 398 (540)
+.++... .++.|.++|+++ ++++|.+..... ......++|+|+||||+
T Consensus 286 ---~~~a~~~-------~l~~L~~~gv~I----~Vk~y~~p~~~~------------------~~~~~~f~HaK~~vvD~ 333 (424)
T PHA02820 286 ---IMRNFLR-------SIAMLKSKNINI----EVKLFIVPDADP------------------PIPYSRVNHAKYMVTDK 333 (424)
T ss_pred ---cHHHHHH-------HHHHHhccCceE----EEEEEEcCcccc------------------cCCcceeeeeeEEEEcc
Confidence 1122222 256788889876 344553311100 00124699999999997
Q ss_pred eEEEecCcccccccCCCCCCcceEEEEecC
Q 009218 399 EYVIMGSANINQRSMAGSKDTEIAMGSYQP 428 (540)
Q Consensus 399 ~~~~IGSANin~RSm~g~~DsEi~v~i~d~ 428 (540)
++.|||+|||.||+..| .|+++.++++
T Consensus 334 -~a~IGTsN~D~rsf~~n--~ev~~~i~~~ 360 (424)
T PHA02820 334 -TAYIGTSNWTGNYFTDT--CGVSINITPD 360 (424)
T ss_pred -cEEEECCcCCHHHHhcc--CcEEEEEecC
Confidence 69999999999999965 9999999876
No 11
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.94 E-value=2.6e-25 Score=238.59 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
..+...+..+|.+|++.|+|.|+||+++. .+..+|..+++ +|++|.||+|.....+.-...
T Consensus 250 ~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~~a~~--rGv~V~Ii~~~~~andfy~~~ 310 (451)
T PRK09428 250 NLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNIIRLLR--RGKKVEIIVGDKTANDFYIPP 310 (451)
T ss_pred hHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHHHHHh--cCCcEEEEcCCcccccCcCCC
Confidence 45778899999999999999999999752 46667776664 789999999975322221123
Q ss_pred hHHHHHHHHHHHHHhHHHH-------HHHHHHcC---CccccCCccccccCCcccCCCcccccCCCCCcccccccccccc
Q 009218 318 VQEILFWQSQTMQMMYSVV-------AQELREMQ---VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMI 387 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i-------~~~L~~~G---v~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 387 (540)
.++++.+....+ .|... .+.|.++| +++ |.. ...
T Consensus 311 d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~i--------~~~--------------------------~~~ 354 (451)
T PRK09428 311 DEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVRL--------WKD--------------------------GDN 354 (451)
T ss_pred ccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEEE--------Eec--------------------------CCC
Confidence 334444444332 11111 12344555 432 221 246
Q ss_pred eeeeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCc
Q 009218 388 YVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 388 yvHSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
.+|+|.|+|||++++|||+|||.||+. .|+|++++|+||..
T Consensus 355 ~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~ 395 (451)
T PRK09428 355 SYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQ 395 (451)
T ss_pred cceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChH
Confidence 899999999999999999999999998 67999999999864
No 12
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.94 E-value=3e-27 Score=187.29 Aligned_cols=73 Identities=60% Similarity=1.183 Sum_probs=71.2
Q ss_pred cccccCCCchHHHHHHHHHHHhhhhhhhhcccCCCCcceeeCccccCCCCCccCCCCCCCCCCCCCccccccC
Q 009218 459 DNCFEEPESLDCIRKVNQIAGENWGRFTAMEFTPLQGHLLRYPLQVDADGTVSPLPGYEQFPDAGGKIIGVHS 531 (540)
Q Consensus 459 ~~~~~~p~s~~~~~~~~~~a~~nw~~~~~~~~~~~~g~L~~~p~~~~~~~~~~~~~g~~~fp~~~~~~~~~~~ 531 (540)
++.|.+|+|+||++++|++|++||++|+++++.+|+|||+.||+.|+.||++++|||+++||||+|+|||++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
No 13
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.92 E-value=1.9e-24 Score=227.86 Aligned_cols=261 Identities=15% Similarity=0.161 Sum_probs=156.3
Q ss_pred CCCcEE-EEecCCCCCccchhhhc----------cccc---cccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCC
Q 009218 14 HSSVNC-VLAPRYASSKLSYFKQQ----------IVGT---IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTP 79 (540)
Q Consensus 14 ~~~V~~-~l~~~~~~~~~~~~~~~----------~~~~---~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~ 79 (540)
++||+| +|+|..+..+ +.+.+ .... .+..|.|++|||++ +||+||+||++ +|-+.
T Consensus 74 ~rGV~Vril~D~~~~~~--~~~~L~~~Gv~v~~~~~~~~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~-~~~~~ 142 (369)
T PHA03003 74 ESGVKVTILVDEQSGDK--DEEELQSSNINYIKVDIGKLNNVGVLLGSFWVSDDR--------RCYIGNASLTG-GSIST 142 (369)
T ss_pred cCCCeEEEEecCCCCCc--cHHHHHHcCCEEEEEeccccCCCCceeeeEEEEcCc--------EEEEecCccCC-cccCc
Confidence 689999 8888765422 22222 0001 12458999999998 99999999999 44322
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcccchhhhhhhccccccchhhh
Q 009218 80 EHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLI 159 (540)
Q Consensus 80 ~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~~~~l~ 159 (540)
.| ....|+|. ||+|.+++..|.+.|+.+++.. +.
T Consensus 143 ~~-------------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~----------------~~ 176 (369)
T PHA03003 143 IK-------------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKS----------------VF 176 (369)
T ss_pred cc-------------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCC----------------cc
Confidence 11 23579993 9999999999999998765431 00
Q ss_pred hhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccchHH
Q 009218 160 KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKS 239 (540)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~s 239 (540)
... +. +...|... . .. ...+. ..+++.+ + |.... .. ....
T Consensus 177 --~~~-----~~-------~~~~~~~~--~-~~-~~~~~--~~~~~~s---~-----P~~~~---------~~---~~~~ 216 (369)
T PHA03003 177 --NRL-----CC-------ACCLPVST--K-YH-INNPI--GGVFFSD---S-----PEHLL---------GY---SRTL 216 (369)
T ss_pred --ccc-----cc-------ccCCcccc--c-cc-ccCCC--cceEEec---C-----ChHHc---------CC---CCCc
Confidence 000 00 00000000 0 00 00000 1123332 2 11100 00 0134
Q ss_pred HHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhH
Q 009218 240 IQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQ 319 (540)
Q Consensus 240 I~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~ 319 (540)
+.++|+++|.+||++|+|+++||++.... +. .......+..+|.+|+ +.+||+|+||+|.+...++ .
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~--d~-----~~~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~~~---~-- 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVIRE--DD-----KTTYWPDIYNALIRAA-INRGVKVRLLVGSWKKNDV---Y-- 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEEee--CC-----CCccHHHHHHHHHHHH-HcCCCEEEEEEecCCcCCc---h--
Confidence 68899999999999999999999864211 00 0011246777776653 1489999999997521110 0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEeCe
Q 009218 320 EILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDE 399 (540)
Q Consensus 320 ~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~ 399 (540)
.. .+.+.|+++|+.. .-.+++|. ...|+|+|||||+
T Consensus 284 ------~~-------~~~~~L~~~G~~~--~i~vri~~-----------------------------~~~H~K~~VVD~~ 319 (369)
T PHA03003 284 ------SM-------ASVKSLQALCVGN--DLSVKVFR-----------------------------IPNNTKLLIVDDE 319 (369)
T ss_pred ------hh-------hHHHHHHHcCCCC--CceEeeec-----------------------------CCCCceEEEEcCC
Confidence 11 1367888999641 00111221 1179999999999
Q ss_pred EEEecCcccccccCCCCCCcceEEEEecCCc
Q 009218 400 YVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 400 ~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
+++|||+||+.||+.. +.|+++.+.+++.
T Consensus 320 ~a~iGS~N~d~~s~~~--~~e~~~~~~~~~~ 348 (369)
T PHA03003 320 FAHITSANFDGTHYLH--HAFVSFNTIDKEL 348 (369)
T ss_pred EEEEeccccCchhhcc--CCCeEEecCChhH
Confidence 9999999999999985 4898877666543
No 14
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.64 E-value=2.9e-15 Score=160.48 Aligned_cols=147 Identities=18% Similarity=0.191 Sum_probs=107.3
Q ss_pred CCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCC
Q 009218 198 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 277 (540)
Q Consensus 198 ~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~ 277 (540)
..|.+|++.|++.+. .|+. .-.+.+++|+++|.+||++|+|+++||+++...
T Consensus 4 ~~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~--------- 55 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSDEV--------- 55 (424)
T ss_pred cccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCccc---------
Confidence 357899999997653 2321 126789999999999999999999999953210
Q ss_pred CCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCcccccc
Q 009218 278 DNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYC 357 (540)
Q Consensus 278 ~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~ 357 (540)
....+..+..+|.+|++ +||+|+|+++.. +.+. . ..+.|+++|+++. .|.
T Consensus 56 ~~~~G~~i~~aL~~aA~--rGV~VRIL~d~~--~~~~-------------~-------~~~~L~~aGv~v~------~~~ 105 (424)
T PHA02820 56 GTNFGTMILNEIIQLPK--RGVRVRIAVNKS--NKPL-------------K-------DVELLQMAGVEVR------YID 105 (424)
T ss_pred cchhHHHHHHHHHHHHH--CCCEEEEEECCC--CCch-------------h-------hHHHHHhCCCEEE------EEe
Confidence 11235678888888765 889999999953 2110 1 2467889999763 121
Q ss_pred CCcccCCCcccccCCCCCcccccccccccceeeeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEec
Q 009218 358 LGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQ 427 (540)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d 427 (540)
... .....+|+|+||||+++++|||+||+.||+.. +.|+++.+.+
T Consensus 106 ~~~-----------------------~~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~--n~E~gv~i~~ 150 (424)
T PHA02820 106 ITN-----------------------ILGGVLHTKFWISDNTHIYLGSANMDWRSLTQ--VKELGIAIFN 150 (424)
T ss_pred cCC-----------------------CCcccceeeEEEECCCEEEEeCCcCChhhhhh--CCceEEEEec
Confidence 100 01357999999999999999999999999984 4899988864
No 15
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.47 E-value=3.8e-13 Score=126.83 Aligned_cols=131 Identities=25% Similarity=0.365 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCc
Q 009218 237 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 316 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~ 316 (540)
..++.+.++++|++|++.|+|+++||.+.. ......+...|.++.+ +|++|+||++..+....
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~--rGv~V~il~~~~~~~~~--- 81 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAAR--RGVKVRILVDEWSNTDL--- 81 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHH--CCCEEEEEEcccccCCc---
Confidence 467899999999999999999999998631 0002467888888875 68999999997643210
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHc---CCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEE
Q 009218 317 TVQEILFWQSQTMQMMYSVVAQELREM---QVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 393 (540)
Q Consensus 317 ~~~~il~~~~~t~~~~~~~i~~~L~~~---Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKl 393 (540)
. ... .....|.++ |+++ +.+.... .....+|+|+
T Consensus 82 -~------~~~-------~~~~~l~~~~~~~i~~--------~~~~~~~---------------------~~~~~~H~K~ 118 (176)
T cd00138 82 -K------ISS-------AYLDSLRALLDIGVRV--------FLIRTDK---------------------TYGGVLHTKL 118 (176)
T ss_pred -h------HHH-------HHHHHHHHhhcCceEE--------EEEcCCc---------------------ccccceeeeE
Confidence 0 001 123455554 4543 2111000 0136999999
Q ss_pred EEEeCeEEEecCcccccccCCCCCCcceEEEEecCC
Q 009218 394 MIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPH 429 (540)
Q Consensus 394 mIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~ 429 (540)
||||++.+++||+|++.+|+. .+.|+++.+.+|.
T Consensus 119 ~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 119 VIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred EEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 999999999999999999998 5699999998875
No 16
>PRK13912 nuclease NucT; Provisional
Probab=99.43 E-value=7.2e-13 Score=126.11 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.++...++++|++|+++|+|+. |+++. ..+..+|.+|.+ +||+|+||++...... .
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa~--RGV~VrIlld~~~~~~----~ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAAK--RGVKISIIYDYESNHN----N 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHHH--CCCEEEEEEeCccccC----c
Confidence 4677899999999999999996 55432 357788888764 8999999999753210 0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHH-cCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEE
Q 009218 318 VQEILFWQSQTMQMMYSVVAQELRE-MQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 396 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~-~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 396 (540)
.. .+ ...|.+ .++++.. +...... ......++|+|+|||
T Consensus 88 ~~-------~~--------~~~l~~~~~~~~~~-----~~~~~~~--------------------~~~~~~~~H~K~~vi 127 (177)
T PRK13912 88 DQ-------ST--------IGYLDKYPNIKVCL-----LKGLKAK--------------------NGKYYGIMHQKVAII 127 (177)
T ss_pred ch-------hH--------HHHHHhCCCceEEE-----ecCcccc--------------------CcccccccceeEEEE
Confidence 00 01 011211 1222110 0000000 000134789999999
Q ss_pred eCeEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009218 397 DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 397 DD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
|++++++||+|++.+|+. .+.|+++++.||+.+
T Consensus 128 D~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~~ 160 (177)
T PRK13912 128 DDKIVVLGSANWSKNAFE--NNYEVLLITDDTETI 160 (177)
T ss_pred cCCEEEEeCCCCChhHhc--cCCceEEEECCHHHH
Confidence 999999999999999998 459999999888543
No 17
>PRK05443 polyphosphate kinase; Provisional
Probab=99.39 E-value=7.6e-12 Score=140.59 Aligned_cols=218 Identities=17% Similarity=0.216 Sum_probs=142.0
Q ss_pred CCCcEE-EEec---CCCC-Cccchhhhcc-c-------cccccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCC
Q 009218 14 HSSVNC-VLAP---RYAS-SKLSYFKQQI-V-------GTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPE 80 (540)
Q Consensus 14 ~~~V~~-~l~~---~~~~-~~~~~~~~~~-~-------~~~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~ 80 (540)
++||+| ++++ ++.. .+..|.+.+. . -..+..|.|+++||++..+ .-+..|++|+.|+.. ++
T Consensus 391 ~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~~~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~-~s---- 464 (691)
T PRK05443 391 ENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGVVGLKTHAKLALVVRREGG-GLRRYVHLGTGNYNP-KT---- 464 (691)
T ss_pred HcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEccCCccceeEEEEEEeecCC-ceeEEEEEcCCCCCc-ch----
Confidence 679999 8877 4443 2334555431 1 1235899999999986322 334489999999877 22
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEE-eCHHHHHHHHHHHHHHHHhcccchhhhhhhccccccchhhh
Q 009218 81 HRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRL-DGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLI 159 (540)
Q Consensus 81 H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v-~Gpaa~dl~~~F~qrWn~a~~~~~~~~~~~~~~~~~~~~l~ 159 (540)
...|.|+.+.. .+..+.|+...|..-|......
T Consensus 465 ---------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~------------------- 498 (691)
T PRK05443 465 ---------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPV------------------- 498 (691)
T ss_pred ---------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCccc-------------------
Confidence 13688999995 5568999999999876531100
Q ss_pred hhcccccccCccccccCCCCccCCCCCcccccccCCCCCCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccchHH
Q 009218 160 KIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKS 239 (540)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~s 239 (540)
.+. .++-+ |.. ....
T Consensus 499 ---~~~-------------------------------------~l~~s---------P~~----------------~~~~ 513 (691)
T PRK05443 499 ---KLR-------------------------------------KLLVS---------PFT----------------LRER 513 (691)
T ss_pred ---ccc-------------------------------------EEeec---------Ccc----------------HHHH
Confidence 000 01111 211 2466
Q ss_pred HHHHHHHHHHhhcc----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEe-------cCC
Q 009218 240 IQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII-------PMW 308 (540)
Q Consensus 240 I~~ayl~aI~~Ak~----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivl-------p~~ 308 (540)
+.+.+...|.+||+ +|+|.++|+. + ..+..+|..|.+ +||+|.+++ |+.
T Consensus 514 l~~~i~~ei~~Ak~G~~a~I~ik~n~l~-d-----------------~~ii~aL~~As~--~GV~V~liVRGiC~l~pgi 573 (691)
T PRK05443 514 LLELIDREIANARAGKPARIIAKMNSLV-D-----------------PQIIDALYEASQ--AGVKIDLIVRGICCLRPGV 573 (691)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEcCCCC-C-----------------HHHHHHHHHHHH--CCCeEEEEEecccccCCCC
Confidence 88899999999999 9999999964 2 356777777754 789999998 322
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccce
Q 009218 309 PEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIY 388 (540)
Q Consensus 309 peg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 388 (540)
| |..+...+ + ++...|.+ ++++ |.+. +.
T Consensus 574 p-g~sd~i~v--------~-------s~v~r~Le-h~rI--------y~f~--------------------------~g- 601 (691)
T PRK05443 574 P-GLSENIRV--------R-------SIVGRFLE-HSRI--------YYFG--------------------------NG- 601 (691)
T ss_pred C-CCCCCEEE--------H-------HHHHHHHh-cCEE--------EEEe--------------------------CC-
Confidence 2 11121111 1 23455555 3443 2221 11
Q ss_pred eeeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCc
Q 009218 389 VHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 389 vHSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
||.+++|||||++.||+. ++.|+++.|+|+..
T Consensus 602 --------d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 602 --------GDEEVYISSADWMPRNLD--RRVEVLFPILDPRL 633 (691)
T ss_pred --------CCcEEEEECCCCCccccc--ceEEEeEEEeCHHH
Confidence 899999999999999998 56999999999864
No 18
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.36 E-value=2.5e-12 Score=114.35 Aligned_cols=113 Identities=22% Similarity=0.347 Sum_probs=73.0
Q ss_pred HHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhHHHHH
Q 009218 244 YIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILF 323 (540)
Q Consensus 244 yl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~~il~ 323 (540)
++++|.+|+++|+|.++||... .+...|..+. .+|++|+|++...... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~--~~gv~v~ii~~~~~~~-~~~~~------ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAA--KRGVKVRIIVDSNQDD-SEAIN------ 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHH--HTT-EEEEEEECGGGH-HCCCS------
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHH--HCCCeEEEEECCCccc-cchhh------
Confidence 4689999999999999999432 3556666554 3789999999963210 00000
Q ss_pred HHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEeCeEEEe
Q 009218 324 WQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIM 403 (540)
Q Consensus 324 ~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~~I 403 (540)
... ...+.+.+.+.|+++. .++|+|++|+||+++++
T Consensus 54 --~~~----~~~~~~~~~~~~i~v~--------------------------------------~~~H~K~~i~d~~~~ii 89 (126)
T PF13091_consen 54 --LAS----LKELRELLKNAGIEVR--------------------------------------NRLHAKFYIIDDKVAII 89 (126)
T ss_dssp --HHH----HHHHHHHHHHTTHCEE--------------------------------------S-B--EEEEETTTEEEE
T ss_pred --hHH----HHHHHhhhccceEEEe--------------------------------------cCCCcceEEecCccEEE
Confidence 000 1123444466666431 38999999999999999
Q ss_pred cCcccccccCCCCCCcceEEEEecCC
Q 009218 404 GSANINQRSMAGSKDTEIAMGSYQPH 429 (540)
Q Consensus 404 GSANin~RSm~g~~DsEi~v~i~d~~ 429 (540)
||+|++.+|+. ++.|+++.+.++.
T Consensus 90 GS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 90 GSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp ES--CSCCCSC--TSEEEEEEEECHH
T ss_pred cCCCCCcchhc--CCcceEEEEECHH
Confidence 99999999997 5699999998874
No 19
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.30 E-value=4.4e-11 Score=126.52 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+.+++++++|++||++|+||..+|+-... .++.+++.+|.+|+ .+||+|+|+++.. |. .
T Consensus 30 ~~~~~~l~~~I~~Ak~~I~i~~yi~~~~~d------------~~g~~i~~aL~~aa--~rGV~Vril~D~~--~~--~-- 89 (369)
T PHA03003 30 MSTYECFDEIISQAKKYIYIASFCCNLRST------------PEGRLILDKLKEAA--ESGVKVTILVDEQ--SG--D-- 89 (369)
T ss_pred CCHHHHHHHHHHhhhhEEEEEEEEecccCC------------chHHHHHHHHHHhc--cCCCeEEEEecCC--CC--C--
Confidence 578999999999999999999887543211 14688999999886 4899999999953 10 0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEe
Q 009218 318 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 397 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 397 (540)
...+.|+++|+++.+ +.+.. .+ .....|+|++|||
T Consensus 90 -----------------~~~~~L~~~Gv~v~~------~~~~~---------------------~~-~~~~~~~k~~IiD 124 (369)
T PHA03003 90 -----------------KDEEELQSSNINYIK------VDIGK---------------------LN-NVGVLLGSFWVSD 124 (369)
T ss_pred -----------------ccHHHHHHcCCEEEE------Eeccc---------------------cC-CCCceeeeEEEEc
Confidence 125789999997632 11100 00 0124589999999
Q ss_pred CeEEEecCcccccccCCCCCCcceEEEEe
Q 009218 398 DEYVIMGSANINQRSMAGSKDTEIAMGSY 426 (540)
Q Consensus 398 D~~~~IGSANin~RSm~g~~DsEi~v~i~ 426 (540)
++++++||+||.++|+. .+.|.++.++
T Consensus 125 g~~~y~Gg~Ni~~~~~~--~~~~~g~~~d 151 (369)
T PHA03003 125 DRRCYIGNASLTGGSIS--TIKTLGVYST 151 (369)
T ss_pred CcEEEEecCccCCcccC--ccccceeEec
Confidence 99999999999999997 4578887765
No 20
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.26 E-value=5.2e-11 Score=133.26 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHhhcc----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEe-------
Q 009218 237 DKSIQTAYIQAIRSAQH----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII------- 305 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivl------- 305 (540)
+..+.+.+.+.|.+|++ +|+|.++||. + ..+..+|..|.+ +||+|.+++
T Consensus 502 ~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l~-D-----------------~~ii~aL~~As~--aGV~V~LivRGiCcL~ 561 (672)
T TIGR03705 502 RKRLLELIDREIENARAGKPARIIAKMNSLV-D-----------------PDLIDALYEASQ--AGVKIDLIVRGICCLR 561 (672)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC-C-----------------HHHHHHHHHHHH--CCCeEEEEEecccccC
Confidence 45678888999999999 9999999964 2 356677777754 789999998
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccc
Q 009218 306 PMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRF 385 (540)
Q Consensus 306 p~~peg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (540)
|+.| |..+...+ + ++..++.+ |++
T Consensus 562 pgip-g~sd~i~v--------~-------siv~r~Le-h~r--------------------------------------- 585 (672)
T TIGR03705 562 PGVP-GLSENIRV--------R-------SIVGRFLE-HSR--------------------------------------- 585 (672)
T ss_pred CCCC-CCCCCEEE--------E-------EEhhHhhC-cCE---------------------------------------
Confidence 2221 11111111 0 12334444 343
Q ss_pred cceeeeEEEEE---eCeEEEecCcccccccCCCCCCcceEEEEecCCc
Q 009218 386 MIYVHAKGMIV---DDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 386 ~iyvHSKlmIV---DD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
+.+. ||.+++||||||+.|||. +..|+++.|+||..
T Consensus 586 -------Iy~f~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~~ 624 (672)
T TIGR03705 586 -------IYYFGNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPTL 624 (672)
T ss_pred -------EEEEeCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHHH
Confidence 3333 688999999999999998 66999999999854
No 21
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.22 E-value=1.1e-10 Score=124.79 Aligned_cols=134 Identities=17% Similarity=0.277 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+++.+++++|++||++||||+.||..+. ++.++..+|.+|.+ +||+|+|+++.. |.....
T Consensus 17 ~e~~~~l~~~I~~Ak~~I~i~~yi~~~d~--------------~g~~l~~aL~~aa~--rGV~Vril~D~~--gs~~~~- 77 (411)
T PRK11263 17 EQYYPRVFEAIAAAQEEILLETFILFEDK--------------VGKQLHAALLAAAQ--RGVKVEVLVDGY--GSPDLS- 77 (411)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEEecCc--------------hHHHHHHHHHHHHH--CCCEEEEEEECC--CCCCCC-
Confidence 57899999999999999999998887542 35788888888865 889999999975 322110
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEe
Q 009218 318 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 397 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 397 (540)
..+.+.|.++|+++. +|.....-. .... ......|.|++|||
T Consensus 78 ----------------~~~~~~L~~aGv~v~------~~~p~~~~~---------------~~~~-~~~~R~HrKiiVID 119 (411)
T PRK11263 78 ----------------DEFVNELTAAGVRFR------YFDPRPRLL---------------GMRT-NLFRRMHRKIVVID 119 (411)
T ss_pred ----------------HHHHHHHHHCCeEEE------EeCCccccc---------------cccc-ccccCCcceEEEEc
Confidence 123678999999763 222110000 0000 00136899999999
Q ss_pred CeEEEecCcccccccCC--CC-CCcceEEEEecC
Q 009218 398 DEYVIMGSANINQRSMA--GS-KDTEIAMGSYQP 428 (540)
Q Consensus 398 D~~~~IGSANin~RSm~--g~-~DsEi~v~i~d~ 428 (540)
+++++|||.|+.+..+. |. .-.++++.+..|
T Consensus 120 g~~a~vGg~N~~~~~~~~~g~~~w~D~~v~i~Gp 153 (411)
T PRK11263 120 GRIAFVGGINYSADHLSDYGPEAKQDYAVEVEGP 153 (411)
T ss_pred CCEEEEcCeEchHhhccccCCCCceEEEEEEECH
Confidence 99999999999765542 11 124567777766
No 22
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.06 E-value=1.2e-09 Score=120.09 Aligned_cols=133 Identities=17% Similarity=0.121 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+.+++++++|++||++|+||. |+-... .++.+++.+|++|++ +||+|+|+++.. |....
T Consensus 149 ~~~~~~l~~~I~~Ak~~I~i~~--yi~~~d------------~~g~~i~~aL~~aa~--rGV~VRiL~D~~--Gs~~~-- 208 (509)
T PRK12452 149 DQTFSEILQAIEQAKHHIHIQY--YIYKSD------------EIGTKVRDALIKKAK--DGVIVRFLYDGL--GSNTL-- 208 (509)
T ss_pred HHHHHHHHHHHHHhCCEEEEEE--EEEeCC------------cHHHHHHHHHHHHHH--CCCEEEEEEECC--CCCCC--
Confidence 5788999999999999999995 443211 146788899988864 899999999975 21100
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEe
Q 009218 318 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 397 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 397 (540)
...+.+.|+++|+++.. |.+..... ...+.+...|.|++|||
T Consensus 209 ---------------~~~~~~~L~~aGi~v~~------f~P~~~~~-----------------~~~~~n~RnHRKi~VID 250 (509)
T PRK12452 209 ---------------RRRFLQPMKEAGIEIVE------FDPIFSAW-----------------LLETVNYRNHRKIVIVD 250 (509)
T ss_pred ---------------CHHHHHHHHhCCeEEEE------ecCccccc-----------------ccccccCCCCCeEEEEc
Confidence 11246789999997631 21100000 00112456899999999
Q ss_pred CeEEEecCcccccccCCCC----CCcceEEEEecC
Q 009218 398 DEYVIMGSANINQRSMAGS----KDTEIAMGSYQP 428 (540)
Q Consensus 398 D~~~~IGSANin~RSm~g~----~DsEi~v~i~d~ 428 (540)
++++++||.||.+..+..+ .-..+.+.++.|
T Consensus 251 g~ia~~GG~Ni~d~y~~~~~~~~~WrD~~~~i~Gp 285 (509)
T PRK12452 251 GEIGFTGGLNVGDEYLGRSKKFPVWRDSHLKVEGK 285 (509)
T ss_pred CCEEEeCCcccchhhcCCCCCCCCceEEEEEEECH
Confidence 9999999999988765421 012356666655
No 23
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.06 E-value=1.6e-09 Score=118.57 Aligned_cols=135 Identities=18% Similarity=0.182 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+.+.+++++|++||++|+||...|..+. ++.+++.+|.+|++ +||+|+|+++.. |....
T Consensus 125 ~~~~~~l~~~I~~Ak~~I~l~~yi~~~d~--------------~g~~i~~aL~~aa~--rGV~VriL~D~~--Gs~~~-- 184 (483)
T PRK01642 125 DETFQAIIRDIELARHYILMEFYIWRPDG--------------LGDQVAEALIAAAK--RGVRVRLLYDSI--GSFAF-- 184 (483)
T ss_pred HHHHHHHHHHHHHhhcEEEEEEEEEccCC--------------cHHHHHHHHHHHHH--CCCEEEEEEECC--CCCCC--
Confidence 57889999999999999999964333221 36788899988875 789999999965 21100
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEe
Q 009218 318 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 397 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 397 (540)
.. ..+.+.|+++|+++.+. + ....... ...+.....|.|++|||
T Consensus 185 -------~~-------~~~~~~L~~~Gi~v~~~--~---p~~~~~~-----------------~~~~~n~RnHrKi~VID 228 (483)
T PRK01642 185 -------FR-------SPYPEELRNAGVEVVEF--L---KVNLGRV-----------------FRRRLDLRNHRKIVVID 228 (483)
T ss_pred -------Cc-------HHHHHHHHHCCCEEEEe--c---CCCcccc-----------------cccccccccCceEEEEc
Confidence 00 11367899999976321 0 1000000 00112457999999999
Q ss_pred CeEEEecCccccc-ccCCCCCC----cceEEEEecC
Q 009218 398 DEYVIMGSANINQ-RSMAGSKD----TEIAMGSYQP 428 (540)
Q Consensus 398 D~~~~IGSANin~-RSm~g~~D----sEi~v~i~d~ 428 (540)
++++++||.||.+ .++..+.. .++.+.++.|
T Consensus 229 g~ia~~Gg~Ni~d~~y~~~~~~~~~w~D~~~~i~Gp 264 (483)
T PRK01642 229 GYIAYTGSMNVVDPEYFKQDPGVGQWRDTHVRIEGP 264 (483)
T ss_pred CCEEEeCCcccCCHHHhCCCCCCCCcEEEEEEEEcH
Confidence 9999999999988 66642211 2345666554
No 24
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.04 E-value=2.2e-09 Score=116.00 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCC--CCCCC
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE--GDPKT 315 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~pe--g~~~~ 315 (540)
.+++++++++|++|+++||||+.||-.+. .+.+++.+|.+|.++++||+|+|+++.+=. |...+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 57899999999999999999999997653 368899999998877899999999996311 00000
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHcC--CccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEE
Q 009218 316 NTVQEILFWQSQTMQMMYSVVAQELREMQ--VDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKG 393 (540)
Q Consensus 316 ~~~~~il~~~~~t~~~~~~~i~~~L~~~G--v~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKl 393 (540)
... . ....+++.|.+++ +++ .+|.... +.+......|.|+
T Consensus 100 ~~~---------~---~~~~~~~~l~~~~~gv~v------~~f~~p~--------------------~~~e~~gr~HrKi 141 (451)
T PRK09428 100 AAS---------N---TNADWYCEMAQEYPGVDI------PVYGVPV--------------------NTREALGVLHLKG 141 (451)
T ss_pred CCC---------C---cCHHHHHHHHHhCCCceE------EEcCCcc--------------------ccchhhhhceeeE
Confidence 000 0 0012356777754 654 2443210 0111234589999
Q ss_pred EEEeCeEEEecCcccccccCCC----CCCcceEEEEecCC
Q 009218 394 MIVDDEYVIMGSANINQRSMAG----SKDTEIAMGSYQPH 429 (540)
Q Consensus 394 mIVDD~~~~IGSANin~RSm~g----~~DsEi~v~i~d~~ 429 (540)
+||||++++.| ||||+-.+.. ..|. .+.|.+|.
T Consensus 142 ~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~ 178 (451)
T PRK09428 142 FIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAE 178 (451)
T ss_pred EEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCch
Confidence 99999999999 8999966642 2344 55577664
No 25
>PRK05443 polyphosphate kinase; Provisional
Probab=99.03 E-value=1.4e-09 Score=122.53 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=91.0
Q ss_pred HHHHHHHHhhcc-----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCc
Q 009218 242 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 316 (540)
Q Consensus 242 ~ayl~aI~~Ak~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~ 316 (540)
+..++.|++|.+ .|.|+-..+.++ ..++.+|..|++ +|++|.|+++..+-. +
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~-----------------s~iv~aL~~Aa~--~Gk~V~vlve~karf--d-- 407 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKD-----------------SPIVDALIEAAE--NGKQVTVLVELKARF--D-- 407 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCC-----------------HHHHHHHHHHHH--cCCEEEEEEccCccc--c--
Confidence 567899999999 899876444332 257788888875 789999999975411 1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEE
Q 009218 317 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 396 (540)
Q Consensus 317 ~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 396 (540)
.++... +++.|.++|+++ +|.+ ....+|||+++|
T Consensus 408 ------e~~n~~-------~~~~L~~aGv~V-------~y~~--------------------------~~~k~HaK~~li 441 (691)
T PRK05443 408 ------EEANIR-------WARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 441 (691)
T ss_pred ------HHHHHH-------HHHHHHHcCCEE-------EEcc--------------------------CCccceeEEEEE
Confidence 122222 478999999976 2433 146899999999
Q ss_pred eCe-------EEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009218 397 DDE-------YVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 397 DD~-------~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
|++ |+.|||+|+|.||...+ +|+++.+.|++++
T Consensus 442 d~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i~ 481 (691)
T PRK05443 442 VRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEIG 481 (691)
T ss_pred EeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHHH
Confidence 999 99999999999999855 9999999888754
No 26
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=99.00 E-value=7.3e-11 Score=77.24 Aligned_cols=27 Identities=59% Similarity=1.015 Sum_probs=18.8
Q ss_pred cccCccceEEEcCCCCCCCCceEEEECcccCCCCC
Q 009218 41 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGR 75 (540)
Q Consensus 41 ~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R 75 (540)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 58999999999998 9999999999854
No 27
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.88 E-value=5.2e-08 Score=101.52 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=106.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCCcchhhhhhhhccccccchHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCC
Q 009218 198 ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGA 277 (540)
Q Consensus 198 ~~~~vQvlRs~~~~~~~~~p~~~~~~~~~~l~~~~~~~~e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~ 277 (540)
.+|..+|+.|++.+. .||.. ... .+..+|++.+|++|+..|+|...|..... ++. ....
T Consensus 48 ~~C~~~vvESIP~gl--~f~~~--------------t~~-~sT~eaW~~Ll~sA~~eldIas~ywsL~~---~d~-~~~d 106 (456)
T KOG3603|consen 48 DTCKLVLVESIPAGL--TFPDA--------------SPF-LSTKEAWLELLSTAQEELDIASFYWSLTG---KDT-GVVD 106 (456)
T ss_pred CceeEEEEecccccC--cCccc--------------CCC-ccHHHHHHHHhhccceEEEEEEEeecccc---cee-ccCC
Confidence 458899999986653 23321 112 46679999999999999999998876432 111 0011
Q ss_pred CC-chHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCC-ccccCCcccc
Q 009218 278 DN-LIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQV-DAHPQDYLSF 355 (540)
Q Consensus 278 ~n-~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv-~~~p~~yl~~ 355 (540)
.+ .-+..+...|.... ++||.|+|....-+.+.+.. . ...|.+.|. ++.-.| +
T Consensus 107 sSt~~G~~vy~~L~~~~--~~gIsiriA~~~p~~~~~~~-d-------------------~~~Le~~Gaa~vr~id---~ 161 (456)
T KOG3603|consen 107 SSTQYGEQVYNTLLALA--KSGVKIRIAQSYPSGGPPNA-D-------------------LQVLESLGLAQVRSID---M 161 (456)
T ss_pred CcchHHHHHHHHHHHhc--cCCeEEEEEeecCCCCCCcc-c-------------------HHHHHhCCCceEEeec---c
Confidence 11 13677777777664 46799999988644333211 0 345667773 321111 1
Q ss_pred ccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEeCeEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009218 356 YCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 356 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
-.+ .+ ..-+|+|.++||++...+||||||.||+.+- -|+++.+++....
T Consensus 162 ~~l-----------------------~g--~GvlHtKf~vvD~khfylGSaNfDWrSlTqv--kElGv~v~NCpcl 210 (456)
T KOG3603|consen 162 NRL-----------------------TG--GGVLHTKFWVVDIKHFYLGSANFDWRSLTQV--KELGVVVRNCPCL 210 (456)
T ss_pred ccc-----------------------cc--CceEEEEEEEEecceEEEeccccchhhccce--eEeeeEEecChhH
Confidence 110 01 4689999999999999999999999999754 8999999987643
No 28
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.68 E-value=1.6e-08 Score=66.56 Aligned_cols=27 Identities=52% Similarity=0.623 Sum_probs=25.1
Q ss_pred cceeeeEEEEEeCeEEEecCccccccc
Q 009218 386 MIYVHAKGMIVDDEYVIMGSANINQRS 412 (540)
Q Consensus 386 ~iyvHSKlmIVDD~~~~IGSANin~RS 412 (540)
..+.|+|+||||+++++|||+|++.||
T Consensus 2 ~~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 2 DGVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CCcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 358999999999999999999999986
No 29
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.44 E-value=8.7e-08 Score=62.77 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=18.2
Q ss_pred ceeeeEEEEEeCeEEEecCccccccc
Q 009218 387 IYVHAKGMIVDDEYVIMGSANINQRS 412 (540)
Q Consensus 387 iyvHSKlmIVDD~~~~IGSANin~RS 412 (540)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 57899999999999999999999875
No 30
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.13 E-value=1.9e-05 Score=85.29 Aligned_cols=122 Identities=14% Similarity=0.224 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+...+.+++|++|+++|||+..+|.... .+.++...+.++++ +||+|+++++...... .
T Consensus 69 ~~~~~~~~~~i~~a~~~I~~~~~i~~~d~--------------~~~~i~~~l~~~a~--~gv~vr~l~D~~~~~~--~-- 128 (438)
T COG1502 69 ADAFAALIELIEAAKKSIYLQYYIWQDDE--------------LGREILDALIEAAK--RGVEVRLLLDDIGSTR--G-- 128 (438)
T ss_pred HHHHHHHHHHHHHHhhEEEEEEEEEeCCh--------------hHHHHHHHHHHHHH--cCCEEEEEEecCCCcc--c--
Confidence 56788999999999999999876665432 25678888888765 6799999999763310 0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCC-ccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEE
Q 009218 318 VQEILFWQSQTMQMMYSVVAQELREMQV-DAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 396 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv-~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 396 (540)
....+...+++.|+ .+. .+...... . ........+.|.|++|+
T Consensus 129 --------------~~~~~~~~~~~~~i~~~~------~~~~~~~~------------~----~~~~~~~~r~H~K~~vi 172 (438)
T COG1502 129 --------------LLKSLLALLKRAGIEEVR------LFNPASPR------------P----LRFRRLNRRLHRKIVVI 172 (438)
T ss_pred --------------ccHHHHHHHhcCCceEEE------ecCCcccc------------c----chhhhhhccccceEEEE
Confidence 01224667778887 321 11110000 0 00112367899999999
Q ss_pred eCeEEEecCcccccccCCC
Q 009218 397 DDEYVIMGSANINQRSMAG 415 (540)
Q Consensus 397 DD~~~~IGSANin~RSm~g 415 (540)
|++.+++|++|+.+..+..
T Consensus 173 D~~i~~vGg~N~~d~y~~~ 191 (438)
T COG1502 173 DGKVAFVGGANIGDEYFHK 191 (438)
T ss_pred cCCEEEecCcccchhhhcc
Confidence 9999999999999999873
No 31
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=98.12 E-value=2.5e-05 Score=88.21 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHHHHHHhhcc-----EEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCc
Q 009218 242 TAYIQAIRSAQH-----FIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTN 316 (540)
Q Consensus 242 ~ayl~aI~~Ak~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~ 316 (540)
...++.|++|.+ .|.|+- |-+.+. ..++.+|.+|++ +|++|+|++....-.+- ..
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~----------------s~ii~aL~~Aa~--~Gk~V~v~veLkArfde-~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKD----------------SPIIDALIEAAE--NGKEVTVVVELKARFDE-EA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCC----------------cHHHHHHHHHHH--cCCEEEEEEEehhhccc-hh
Confidence 577899999998 899985 444321 247788888875 78999999995431110 11
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEE
Q 009218 317 TVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIV 396 (540)
Q Consensus 317 ~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 396 (540)
++ .+.+.|.++|+++ +|++ ....+|||+++|
T Consensus 402 ni----------------~wa~~le~aG~~v-------iyg~--------------------------~~~k~H~K~~li 432 (672)
T TIGR03705 402 NI----------------RWARRLEEAGVHV-------VYGV--------------------------VGLKTHAKLALV 432 (672)
T ss_pred hH----------------HHHHHHHHcCCEE-------EEcC--------------------------CCeeeeeEEEEE
Confidence 11 1357899999976 3543 146899999999
Q ss_pred eC-------eEEEecCcccccccCCCCCCcceEEEEecCCc
Q 009218 397 DD-------EYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 397 DD-------~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
|. +++.||+.|+|......- +++++...+++.
T Consensus 433 ~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i 471 (672)
T TIGR03705 433 VRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEI 471 (672)
T ss_pred EEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHH
Confidence 97 479999999999975543 778887666644
No 32
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.06 E-value=0.00017 Score=75.74 Aligned_cols=141 Identities=22% Similarity=0.381 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhccEEEEEe-eeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhH
Q 009218 241 QTAYIQAIRSAQHFIYIEN-QYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQ 319 (540)
Q Consensus 241 ~~ayl~aI~~Ak~~IYIEn-qYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~ 319 (540)
.+|+++.|..|++||||.- +||=+..+. +. .+.. +|=.+|.+|+- |||+|++++..|+...+ ...
T Consensus 278 L~ail~~i~~A~~fv~isVMdY~Ps~~y~----k~---~~fw--~iDdaiR~aa~--RgV~vR~lvs~~~~~~~---~m~ 343 (456)
T KOG3603|consen 278 LEAILNTIDEAQKFVYISVMDYFPSTIYS----KN---HRFW--EIDDAIRRAAV--RGVKVRLLVSCWKHSEP---SMF 343 (456)
T ss_pred HHHHHHHHHHHhhheeeeehhccchheee----cC---cchh--hhhHHHHHHhh--cceEEEEEEeccCCCCc---hHH
Confidence 5799999999999999964 455333221 11 1111 34455555543 89999999998865332 111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEeCe
Q 009218 320 EILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVDDE 399 (540)
Q Consensus 320 ~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~ 399 (540)
++| ++++ .+...+....+++ +||-.- .... .+ -......|+|.||-++
T Consensus 344 ~~L----~SLq----~l~~~~~~~~iqv------k~f~VP----------~~~~------~~-ip~~Rv~HnKymVTe~- 391 (456)
T KOG3603|consen 344 RFL----RSLQ----DLSDPLENGSIQV------KFFIVP----------QTNI------EK-IPFARVNHNKYMVTES- 391 (456)
T ss_pred HHH----HHHH----HhcCccccCceEE------EEEEeC----------CCcc------cc-CchhhhccceeEEeec-
Confidence 111 1110 1111121212222 233220 0000 00 0124578999999876
Q ss_pred EEEecCcccccccCCCCCCcceEEEEecCC
Q 009218 400 YVIMGSANINQRSMAGSKDTEIAMGSYQPH 429 (540)
Q Consensus 400 ~~~IGSANin~RSm~g~~DsEi~v~i~d~~ 429 (540)
.++||+.|+..-.+..+ +-++++|.++.
T Consensus 392 aayIGTSNws~dYf~~T--aG~~ivv~q~~ 419 (456)
T KOG3603|consen 392 AAYIGTSNWSGDYFTST--AGTAIVVRQTP 419 (456)
T ss_pred ceeeeccCCCccceecc--CceEEEEecCC
Confidence 68999999988888755 77889887653
No 33
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=98.01 E-value=1.4e-05 Score=75.13 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=50.1
Q ss_pred cccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeC
Q 009218 41 IFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDG 120 (540)
Q Consensus 41 ~~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~G 120 (540)
..++|+|++|||++ ++++||.|+....+. .++|+.+.+.+
T Consensus 111 ~~~~H~K~~iiD~~--------~~~vGS~N~~~~~~~--------------------------------~~~e~~~~~~~ 150 (176)
T cd00138 111 GGVLHTKLVIVDDE--------TAYIGSANLDGRSLT--------------------------------LNSEVGVVIYD 150 (176)
T ss_pred ccceeeeEEEEcCC--------EEEEECCcCChhhhh--------------------------------hhcceEEEEeC
Confidence 37999999999998 999999999985542 46799999999
Q ss_pred H--HHHHHHHHHHHHHHH
Q 009218 121 P--AAYDVLINFEQRWRK 136 (540)
Q Consensus 121 p--aa~dl~~~F~qrWn~ 136 (540)
| +|.++.+.|.+.|+.
T Consensus 151 ~~~~~~~~~~~f~~~w~~ 168 (176)
T cd00138 151 PASLAADLKASLERDWNS 168 (176)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 9 799999999999996
No 34
>PLN02866 phospholipase D
Probab=97.89 E-value=8.3e-05 Score=86.03 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEec
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIP 306 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp 306 (540)
.+.+.+++++|.+||++|||+.-.|.+..+.+.. ..-..+..+...|.+|++ +||+|+||+=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp-----~~D~~g~RL~~lL~rKAk--rGVkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP-----FHDHESSRLDSLLEAKAK--QGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec-----CCCchHHHHHHHHHHHHH--CCCEEEEEEE
Confidence 5789999999999999999954222211111100 000135677788887764 7999999744
No 35
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.56 E-value=5.8e-05 Score=49.54 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.6
Q ss_pred ccCccceEEEcCCCCCCCCceEEEECcccCCC
Q 009218 42 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCD 73 (540)
Q Consensus 42 ~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~ 73 (540)
.++|+|++|||++ .+|+||.|++.
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~ 26 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDG 26 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCC
Confidence 5899999999998 99999999987
No 36
>PRK13912 nuclease NucT; Provisional
Probab=97.38 E-value=0.00072 Score=64.37 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=44.5
Q ss_pred ccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCH
Q 009218 42 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 121 (540)
Q Consensus 42 ~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gp 121 (540)
..+|.|++|||++ ++|+|+.|++...+.. | +++.+.+..|
T Consensus 118 ~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~------------------N--------------~E~~lii~d~ 157 (177)
T PRK13912 118 GIMHQKVAIIDDK--------IVVLGSANWSKNAFEN------------------N--------------YEVLLITDDT 157 (177)
T ss_pred cccceeEEEEcCC--------EEEEeCCCCChhHhcc------------------C--------------CceEEEECCH
Confidence 3689999999998 9999999999854421 1 2567788888
Q ss_pred -HHHHHHHHHHHHHHHh
Q 009218 122 -AAYDVLINFEQRWRKA 137 (540)
Q Consensus 122 -aa~dl~~~F~qrWn~a 137 (540)
.+.++.+.|.+.|..+
T Consensus 158 ~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 158 ETILKAKEYFQKMLGSC 174 (177)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 5688999999999864
No 37
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=97.15 E-value=0.0011 Score=58.54 Aligned_cols=53 Identities=25% Similarity=0.497 Sum_probs=40.5
Q ss_pred ccCccceEEEcCCCCCCCCceEEEECcccCCCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeeEEEEEEeCH
Q 009218 42 FTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGP 121 (540)
Q Consensus 42 ~~hHqK~vVID~~~~~~~~~~vAFvGGiDl~~~R~Dt~~H~l~~~~~~~~~~d~~n~~~~~~~~~pr~pWhDv~~~v~Gp 121 (540)
.+.|.|++|||++ ++++|+.|++...|. -.++..+.+.+|
T Consensus 73 ~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~--------------------------------~n~E~~~~~~~~ 112 (126)
T PF13091_consen 73 NRLHAKFYIIDDK--------VAIIGSANLTSSSFR--------------------------------RNYELGVIIDDP 112 (126)
T ss_dssp S-B--EEEEETTT--------EEEEES--CSCCCSC--------------------------------TSEEEEEEEECH
T ss_pred cCCCcceEEecCc--------cEEEcCCCCCcchhc--------------------------------CCcceEEEEECH
Confidence 5899999999987 999999999986552 235899999999
Q ss_pred H-HHHHHHHHHHHH
Q 009218 122 A-AYDVLINFEQRW 134 (540)
Q Consensus 122 a-a~dl~~~F~qrW 134 (540)
. +..+.+.|.+.|
T Consensus 113 ~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 113 ELVKELIREFDQMW 126 (126)
T ss_dssp HHHHHHHHHTHH-H
T ss_pred HHHHHHHHHHhccC
Confidence 6 999999998888
No 38
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.80 E-value=0.0063 Score=61.70 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCch
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNT 317 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~ 317 (540)
.+|.+...++|++|++-|=|..--|+- .+|..-|.+|.. +|+|-|||+|+.. +
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD------------------~dIf~DLleAa~-kR~VpVYiLLD~~--------~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTD------------------VDIFCDLLEAAN-KRGVPVYILLDEQ--------N 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeecccc------------------HHHHHHHHHHHH-hcCCcEEEEechh--------c
Confidence 568999999999999999999888873 346666777652 4889999999963 2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccCCCcccccCCCCCcccccccccccceeeeEEEEEe
Q 009218 318 VQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD 397 (540)
Q Consensus 318 ~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD 397 (540)
.+.++ +.-.+.+++..-...+++-..+ |..+.. ...+....-++.|.||||
T Consensus 186 ~~~Fl---------------~Mc~~~~v~~~~~~nmrVRsv~-------------G~~y~~-rsg~k~~G~~~eKF~lvD 236 (284)
T PF07894_consen 186 LPHFL---------------EMCEKLGVNLQHLKNMRVRSVT-------------GCTYYS-RSGKKFKGQLKEKFMLVD 236 (284)
T ss_pred ChHHH---------------HHHHHCCCChhhcCCeEEEEec-------------CCeeec-CCCCeeeCcccceeEEEe
Confidence 22222 2222334422100111111110 000000 001124678999999999
Q ss_pred CeEEEecCcccccccCCCCCCcceEEEE
Q 009218 398 DEYVIMGSANINQRSMAGSKDTEIAMGS 425 (540)
Q Consensus 398 D~~~~IGSANin~RSm~g~~DsEi~v~i 425 (540)
.+.++.||.-+..-|-..+ .-+..++
T Consensus 237 ~~~V~~GSYSFtWs~~~~~--r~~~~~~ 262 (284)
T PF07894_consen 237 GDKVISGSYSFTWSSSRVH--RNLVTVL 262 (284)
T ss_pred cccccccccceeecccccc--cceeEEE
Confidence 9999999999998887643 4454444
No 39
>PF13918 PLDc_3: PLD-like domain
Probab=95.52 E-value=0.21 Score=47.48 Aligned_cols=56 Identities=27% Similarity=0.465 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhccEEEEEeeeeeccC------CCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCCC
Q 009218 241 QTAYIQAIRSAQHFIYIENQYFLGSS------YAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPE 310 (540)
Q Consensus 241 ~~ayl~aI~~Ak~~IYIEnqYFi~~~------~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~pe 310 (540)
.+|.+..|+.|++||||+=-=|.|.. ..|| .|-.+|.+|+- .|||+|++++..|..
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-------------~ID~ALR~AA~-~R~V~VRlLIS~W~h 145 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-------------VIDDALRRAAI-ERGVKVRLLISCWKH 145 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-------------hHHHHHHHHHH-HcCCeEEEEEeecCC
Confidence 46999999999999999876665532 2243 23344444331 378999999999853
No 40
>PLN02352 phospholipase D epsilon
Probab=95.47 E-value=0.081 Score=60.49 Aligned_cols=64 Identities=22% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEE
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVI 304 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Iv 304 (540)
...++++.+||.+|||+|||+.--|-+.-..-.+. ......-.+..+...|.++++ +||+|+||
T Consensus 186 ~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~-~~~~p~~~g~~LgdLLk~KA~--eGV~VrLL 249 (758)
T PLN02352 186 RKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDP-ETDIPHARGVKLGELLKRKAE--EGVAVRVM 249 (758)
T ss_pred HHHHHHHHHHHHhhccEEEEEEEEecCCceeccCc-ccccccccchHHHHHHHHHHH--CCCEEEEE
Confidence 67899999999999999999964444321000000 000000124567777777765 68999988
No 41
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=94.87 E-value=0.19 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.5
Q ss_pred EEEecCcccccccCCCCCCcceEEEEe
Q 009218 400 YVIMGSANINQRSMAGSKDTEIAMGSY 426 (540)
Q Consensus 400 ~~~IGSANin~RSm~g~~DsEi~v~i~ 426 (540)
..+|||.|++.||.. ||-|-+++|.
T Consensus 396 lTvIGSSNf~~RS~~--rDlEtn~liv 420 (469)
T KOG3964|consen 396 LTVIGSSNFGRRSVH--RDLETNILIV 420 (469)
T ss_pred eEEecCCCccccccc--cccccceEEE
Confidence 468999999999997 8999877773
No 42
>PLN02270 phospholipase D alpha
Probab=94.05 E-value=0.4 Score=55.23 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEe
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVII 305 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivl 305 (540)
..+.+.+.+||.+|||+|||.-=-|-+.-...++. ...... -+..|...|.++ +++||+|+||+
T Consensus 208 ~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd~-~~p~~~-~~~~LGeLLk~K--A~eGV~V~iLv 271 (808)
T PLN02270 208 HRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDS-RRPKPG-GDVTIGELLKKK--ASEGVRVLLLV 271 (808)
T ss_pred hhhHHHHHHHHHhhhcEEEEEEeecCCCceEecCC-CCCCCC-CcchHHHHHHHH--hcCCCEEEEEE
Confidence 45778889999999999999975554331110100 000000 012444555554 35899999998
No 43
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=92.89 E-value=0.26 Score=51.40 Aligned_cols=94 Identities=21% Similarity=0.329 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCchhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCcccC
Q 009218 284 ELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREE 363 (540)
Q Consensus 284 ~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~~ 363 (540)
.++.+|.+|+++ |=+|.+++-...--+ +..++. | .+.|.++|+++ +|.+
T Consensus 51 ~iv~aLi~AA~n--GK~Vtv~vELkARFD-Ee~Ni~----W------------a~~Le~aGv~V-------iyG~----- 99 (352)
T PF13090_consen 51 PIVNALIEAAEN--GKQVTVLVELKARFD-EENNIH----W------------AKRLEEAGVHV-------IYGV----- 99 (352)
T ss_dssp HHHHHHHHHHHT--T-EEEEEESTTSSST-TCCCCC----C------------CHHHHHCT-EE-------EE-------
T ss_pred HHHHHHHHHHHc--CCEEEEEEEEecccc-HHHHhH----H------------HhhHHhcCeEE-------EcCC-----
Confidence 578888888875 467888887654211 112222 2 57899999976 4654
Q ss_pred CCcccccCCCCCcccccccccccceeeeEEEEEe-------CeEEEecCcccccccCCCCCCcceEEEEecCCcc
Q 009218 364 APKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD-------DEYVIMGSANINQRSMAGSKDTEIAMGSYQPHHT 431 (540)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD-------D~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~~ 431 (540)
...-+|||+++|= -+|+-+|+-|+|...-..= |.+++..-+++.+
T Consensus 100 ---------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~i~ 151 (352)
T PF13090_consen 100 ---------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPEIG 151 (352)
T ss_dssp ---------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HHHH
T ss_pred ---------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHHHH
Confidence 2568999999983 2899999999999887533 7788887776543
No 44
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=92.00 E-value=1.4 Score=45.42 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=29.3
Q ss_pred cceeeeEEEEE----eCeEEEecCccccc-ccCCCCCCcceEEEEecC
Q 009218 386 MIYVHAKGMIV----DDEYVIMGSANINQ-RSMAGSKDTEIAMGSYQP 428 (540)
Q Consensus 386 ~iyvHSKlmIV----DD~~~~IGSANin~-RSm~g~~DsEi~v~i~d~ 428 (540)
.+.+|+|+.+. =+..++||||||.. -.+. .+-.| ++++.|+
T Consensus 78 ~~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 78 DPPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 57899999999 24679999999987 2222 24578 5555555
No 45
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=91.07 E-value=1.1 Score=51.90 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecC
Q 009218 237 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 307 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~ 307 (540)
-+.......+||.+|++.|||.. +.++....-- ++.-..+ ...|-.-|.++ +.+||+|+||+=.
T Consensus 301 ~~~~~edi~dAI~~Ar~~IyItg-Wwl~pel~L~--Rp~~~~~--~~rLdelLK~K--AeeGVrV~ilv~k 364 (887)
T KOG1329|consen 301 GKKYWEDVADAIENARREIYITG-WWLSPELYLV--RPPKGPN--DWRLDELLKRK--AEEGVRVLILVWK 364 (887)
T ss_pred hhhHHHHHHHHHHhhhhEEEEec-cccCceEEEE--ccCCCCC--ceEHHHHHHHH--HhCCcEEEEEEec
Confidence 36788899999999999999985 4433211000 0000001 11222233333 3489999999864
No 46
>PLN03008 Phospholipase D delta
Probab=85.83 E-value=3.3 Score=48.17 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=21.9
Q ss_pred ceeeeEEEEEeCe--------EEEecCcccccccC
Q 009218 387 IYVHAKGMIVDDE--------YVIMGSANINQRSM 413 (540)
Q Consensus 387 iyvHSKlmIVDD~--------~~~IGSANin~RSm 413 (540)
..=|-|++|||++ +++||.-+|-..-+
T Consensus 370 ~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRw 404 (868)
T PLN03008 370 FTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRY 404 (868)
T ss_pred ccccceEEEEccCCCCCccceEEEEcceeccCCcc
Confidence 3469999999996 99999999965443
No 47
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=85.81 E-value=2 Score=48.22 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCCCCC-chhHHHHHHHHHHHHHhHHHHHHHHHHcCCccccCCccccccCCccc
Q 009218 284 ELALKIASKIRANERFAVYVIIPMWPEGDPKT-NTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKRE 362 (540)
Q Consensus 284 ~la~~l~~a~~~~~gv~V~Ivlp~~peg~~~~-~~~~~il~~~~~t~~~~~~~i~~~L~~~Gv~~~p~~yl~~y~l~~~~ 362 (540)
.|+.+|+.|+++| =+|.+|+-... -.+. .+ ++| .+.|.++|+.+ +|++
T Consensus 385 pIV~ALi~AA~nG--KqVtvlVELkA--RFDEE~N----I~W------------Ak~LE~AGvhV-------vyG~---- 433 (696)
T COG0855 385 PIVRALIDAAENG--KQVTVLVELKA--RFDEEAN----IHW------------AKRLERAGVHV-------VYGV---- 433 (696)
T ss_pred HHHHHHHHHHHcC--CeEEEEEEEhh--hcChhhh----hHH------------HHHHHhCCcEE-------Eecc----
Confidence 4788888888755 56666666542 1111 12 233 67899999976 4554
Q ss_pred CCCcccccCCCCCcccccccccccceeeeEEEEEe----C---eEEEecCcccccccCCCCCCcceEEEEecCCc
Q 009218 363 EAPKDVLANNGDKVSDSQKNQRFMIYVHAKGMIVD----D---EYVIMGSANINQRSMAGSKDTEIAMGSYQPHH 430 (540)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD----D---~~~~IGSANin~RSm~g~~DsEi~v~i~d~~~ 430 (540)
...-+|+|+++|= | +|+=+|+-|.|..+-..= |.+++..-|+++
T Consensus 434 ----------------------~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~~i 484 (696)
T COG0855 434 ----------------------VGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEI 484 (696)
T ss_pred ----------------------cceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCHHH
Confidence 1457999999983 3 689999999999986533 666666656553
No 48
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=78.36 E-value=20 Score=34.56 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHH-HHHHHHHHHhcCCCcEEEEEecCC
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPME-LALKIASKIRANERFAVYVIIPMW 308 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~-la~~l~~a~~~~~gv~V~Ivlp~~ 308 (540)
.-|...++..|..|+.|..+. =|+..+ +.. +...+..+ .++|++++|+....
T Consensus 38 e~il~~Li~~l~k~~ef~IsV--aFit~s---------------G~sll~~~L~d~--~~Kgvkgkilts~Y 90 (198)
T COG3886 38 EKILPRLIDELEKADEFEISV--AFITES---------------GLSLLFDLLLDL--VNKGVKGKILTSDY 90 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEE--EEeeCc---------------cHHHHHHHHHHH--hcCCceEEEecccc
Confidence 468999999999999998888 366543 122 23333333 36899999999854
No 49
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=77.66 E-value=1.6 Score=47.59 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=28.4
Q ss_pred cccceeeeEEEEEeC-------eEEEecCcccccccCCCC----------CCcceEEEE
Q 009218 384 RFMIYVHAKGMIVDD-------EYVIMGSANINQRSMAGS----------KDTEIAMGS 425 (540)
Q Consensus 384 ~~~iyvHSKlmIVDD-------~~~~IGSANin~RSm~g~----------~DsEi~v~i 425 (540)
+..+..|+|+++... .|+++|||||..-.+. . ++.|++|++
T Consensus 344 R~~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAWG-~~~~~~~~l~i~nyElGVl~ 401 (443)
T PF06087_consen 344 RSRAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAWG-KRSKNGSQLSIRNYELGVLF 401 (443)
T ss_dssp TTTS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEE
T ss_pred CCCcCcceEEEEEecCCCCCccceEEeCcccCCHHHhc-ccccCCceeeecceEEEEEE
Confidence 346789999999986 5999999999765553 3 678999998
No 50
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=74.50 E-value=9.8 Score=37.67 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecC
Q 009218 237 DKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPM 307 (540)
Q Consensus 237 e~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~ 307 (540)
...|.+-..++|++|++.|||.... +. -.++...|.+|.+ +||+|++++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~---------~~---------l~~l~~~L~~a~~--rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP---------EF---------LEELRDELEEAVD--RGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G---------GG---------HHHHHHHHHHHHH--TT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH---------HH---------HHHHHHHHHHHHH--CCCEEEEEEeC
Confidence 4678999999999999999998532 11 2456667777654 78999999985
No 51
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=56.30 E-value=5.5 Score=39.39 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCchHHHHhhccCCCcEE---EEecCCCCCccc----hhhhccccccccCccceEEEcCC-CCCCCCceEEEECccc
Q 009218 2 ATHDEETKKFFKHSSVNC---VLAPRYASSKLS----YFKQQIVGTIFTHHQKCVLVDTQ-ASGNNRKITAFIGGID 70 (540)
Q Consensus 2 ~~~d~~~~~~~~~~~V~~---~l~~~~~~~~~~----~~~~~~~~~~~~hHqK~vVID~~-~~~~~~~~vAFvGGiD 70 (540)
.||+|+.++||++-|--+ |++|++-.++-. .|++-.. .-..--.--=||||+ +.++ +|++||..
T Consensus 23 ~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~a-a~rAc~dp~piIdGR~aNcn----lA~lg~~p 94 (247)
T KOG0149|consen 23 ETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEA-ATRACKDPNPIIDGRKANCN----LASLGGKP 94 (247)
T ss_pred ccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHH-HHHHhcCCCCcccccccccc----hhhhcCcc
Confidence 499999999999887544 778877654322 2333211 111111122379998 4444 89999864
No 52
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=51.57 E-value=31 Score=36.87 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccEEEEEeeeeeccCCCCCccccCCCCCchHHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 009218 238 KSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWP 309 (540)
Q Consensus 238 ~sI~~ayl~aI~~Ak~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~la~~l~~a~~~~~gv~V~Ivlp~~p 309 (540)
...++.+.+.|.+||+.|+|.+-|.-.. ..+++..|..++.....++|-|+++..-
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 4688999999999999999999887532 3689999999998889999999999653
No 53
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=38.55 E-value=22 Score=38.86 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=22.8
Q ss_pred ceeeeEEEEE---eC-eEEEecCcccccccCCCCCCcceEEEE
Q 009218 387 IYVHAKGMIV---DD-EYVIMGSANINQRSMAGSKDTEIAMGS 425 (540)
Q Consensus 387 iyvHSKlmIV---DD-~~~~IGSANin~RSm~g~~DsEi~v~i 425 (540)
.--|||+||. |+ -.++|.||||...-+. .-|=+|-+
T Consensus 100 g~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~---~~~q~vw~ 139 (443)
T PF06087_consen 100 GTHHSKMMLLFYEDGSLRVVIPTANLTPYDWN---NKTQGVWI 139 (443)
T ss_dssp --B--EEEEEEETTCEEEEEEESS-BSHHHHC---SSB-EEEE
T ss_pred ccccceeEEEEeCCccEEEEEECCCCCHHHHC---CcceeEEE
Confidence 5789999999 67 7899999999877664 24445544
Done!