Query 009219
Match_columns 540
No_of_seqs 98 out of 131
Neff 3.4
Searched_HMMs 46136
Date Thu Mar 28 21:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06886 TPX2: Targeting prote 99.5 3.6E-14 7.7E-19 113.2 7.0 54 395-448 1-57 (57)
2 KOG2891 Surface glycoprotein [ 58.1 17 0.00037 38.7 5.1 46 392-437 381-427 (445)
3 PF10595 UPF0564: Uncharacteri 43.0 30 0.00065 36.5 4.2 50 395-452 9-58 (356)
4 PF12214 TPX2_importin: Cell c 34.6 30 0.00065 34.1 2.4 65 387-479 67-131 (176)
5 PF13815 Dzip-like_N: Iguana/D 27.3 1.7E+02 0.0038 26.3 5.9 46 395-441 72-117 (118)
6 PF00769 ERM: Ezrin/radixin/mo 14.2 4.3E+02 0.0094 26.9 6.1 32 407-439 37-68 (246)
7 COG4709 Predicted membrane pro 13.7 1.4E+02 0.0031 30.1 2.5 34 62-95 4-40 (195)
8 KOG2412 Nuclear-export-signal 13.4 3.7E+02 0.0081 31.2 5.8 32 407-438 240-271 (591)
9 TIGR01069 mutS2 MutS2 family p 13.3 3.8E+02 0.0082 31.8 6.1 23 407-429 547-569 (771)
10 TIGR00219 mreC rod shape-deter 13.3 3.8E+02 0.0082 27.8 5.5 19 429-447 95-113 (283)
No 1
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=99.51 E-value=3.6e-14 Score=113.22 Aligned_cols=54 Identities=50% Similarity=0.739 Sum_probs=53.2
Q ss_pred cchHHHHHHHHH---HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhccccccCC
Q 009219 395 LRTEERAARRKE---KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPL 448 (540)
Q Consensus 395 ~ksdeRAekRKE---KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~Pm 448 (540)
|+||+||++|+| +|+||.+++|.++.+++++.+++++++|++||++|+|||+||
T Consensus 1 l~t~~RA~~R~eF~~kl~EK~~~~e~~~~~~e~~~~e~ee~eik~LRk~lv~kA~Pm 57 (57)
T PF06886_consen 1 LHTDERAEERKEFDKKLEEKEKAKEAEKEEREAKQKEEEEEEIKQLRKELVFKAQPM 57 (57)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 789999999999 999999999999999999999999999999999999999998
No 2
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.07 E-value=17 Score=38.72 Aligned_cols=46 Identities=30% Similarity=0.454 Sum_probs=36.1
Q ss_pred Cccc-chHHHHHHHHHHHHHHhhhHHHHHHhHHHHhhHHHHHHHHHH
Q 009219 392 PFRL-RTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKL 437 (540)
Q Consensus 392 ~f~~-ksdeRAekRKEKLeEK~~AkE~Ek~~lqak~KEe~EaeIKkL 437 (540)
.|-| +-+.|.++|+.|-+||++|.+.-..+||.+.++++.+-+--|
T Consensus 381 kf~fekieareerrkqkeeeklk~e~qkikeleek~~eeedal~~al 427 (445)
T KOG2891|consen 381 KFEFEKIEAREERRKQKEEEKLKAEEQKIKELEEKIKEEEDALLLAL 427 (445)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 566788888888899999999999999999999877654433
No 3
>PF10595 UPF0564: Uncharacterised protein family UPF0564; InterPro: IPR019579 This entry represents proteins with no known function.
Probab=43.01 E-value=30 Score=36.53 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhccccccCCCccc
Q 009219 395 LRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFY 452 (540)
Q Consensus 395 ~ksdeRAekRKEKLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~PmP~Fy 452 (540)
|.=..|.++++++.---....|.+...++.. +.|++..+- |+|+|+|.+-
T Consensus 9 F~mt~RE~~kk~~~~~~~~~~e~~~~~~~~~---~ee~e~~k~-----FrA~pVP~~v 58 (356)
T PF10595_consen 9 FQMTLREEEKKEKASKSQSDLEQEKKELKKQ---EEEAECKKK-----FRANPVPAHV 58 (356)
T ss_pred CCccHHHHhccchhhhhHHHHHHHHHHHHHH---HHHHHhccC-----CCCCCCCchh
Confidence 3346677766641111112333444444332 345555533 9999999843
No 4
>PF12214 TPX2_importin: Cell cycle regulated microtubule associated protein; InterPro: IPR022021 This domain is found in eukaryotes. This domain is typically between 127 to 182 amino acids in length. This domain is found associated with PF06886 from PFAM. This domain is found in the protein TPX2 (a.k.a p100) which is involved in cell cycling. It is only expressed between the start of the S phase and completion of cytokinesis. The microtubule-associated protein TPX2 has been reported to be crucial for mitotic spindle formation. This domain is close to the C-terminal of TPX2. The protein importin alpha regulates the activity of TPX2 by binding to the nuclear localisation signal in this domain.
Probab=34.55 E-value=30 Score=34.11 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=42.7
Q ss_pred CCCCCCcccchHHHHHHHHHHHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhccccccCCCcccccCCCCCCCCCCCC
Q 009219 387 PNSFTPFRLRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLCFKARPLPHFYKERAIPKSQMNKDP 466 (540)
Q Consensus 387 p~~~s~f~~ksdeRAekRKEKLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~fKA~PmP~Fy~~~~~pK~~~kK~p 466 (540)
++...+|.|++++||..|.. .....+ + ..+|+++|...... .+-..+++-.+
T Consensus 67 ~T~p~~F~L~T~~Ra~~r~~----~~~~~~------------~----------~~~~~srp~ki~~~--~~~~p~~~~~~ 118 (176)
T PF12214_consen 67 PTEPQEFHLETEERAQQRSS----SVSSSE------------E----------QFNFHSRPCKILED--VPGVPEKKVLP 118 (176)
T ss_pred CCcccCceeehhhhhhcccc----ccccch------------h----------hcccccCccccccC--CCCCccccccc
Confidence 44677999999999998853 111000 0 02588888833332 44455667779
Q ss_pred CCCCCCCCCCCcc
Q 009219 467 PTRPQSPKLTAST 479 (540)
Q Consensus 467 ~TrpkSPkl~~~~ 479 (540)
+|.|+||++....
T Consensus 119 ~t~p~sp~~~~k~ 131 (176)
T PF12214_consen 119 VTVPKSPAFALKN 131 (176)
T ss_pred cCCCCChhhhccc
Confidence 9999999999543
No 5
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.34 E-value=1.7e+02 Score=26.30 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhc
Q 009219 395 LRTEERAARRKEKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTL 441 (540)
Q Consensus 395 ~ksdeRAekRKEKLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL 441 (540)
+.+-+.-...-+.|++++.+...+..+++.+.++ ..++|+.||+++
T Consensus 72 l~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~k~lk~E~ 117 (118)
T PF13815_consen 72 LHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKK-QKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 4555555555568999999999999999888877 677999999874
No 6
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=14.16 E-value=4.3e+02 Score=26.89 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=17.5
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhh
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQ 439 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRk 439 (540)
.|+|+.+-.+.|+..|+.+..+ .+.++.+|+.
T Consensus 37 ~Leek~k~aeeea~~Le~k~~e-aee~~~rL~~ 68 (246)
T PF00769_consen 37 ELEEKLKQAEEEAEELEQKRQE-AEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666666666666666665433 3444444443
No 7
>COG4709 Predicted membrane protein [Function unknown]
Probab=13.68 E-value=1.4e+02 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=26.9
Q ss_pred chhHHHHhhhC---CCchHHHHHHHHHHHHHHHHHHH
Q 009219 62 NKYVEEAERYS---RPGSVAQKKAFFEAHYKELAARK 95 (540)
Q Consensus 62 n~~~ee~~~~~---~pg~va~kka~fe~~y~~~~~~~ 95 (540)
--||.|+++|+ -+-.-.|.-.|||+||..-.+..
T Consensus 4 ~efL~eL~~yL~~Lp~~~r~e~m~dyeehF~~a~~~G 40 (195)
T COG4709 4 TEFLNELEQYLEGLPREERREIMYDYEEHFREAQEAG 40 (195)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 45899999887 45667899999999998775553
No 8
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=13.44 E-value=3.7e+02 Score=31.19 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=21.0
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHh
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLR 438 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLR 438 (540)
|.++..++.|.|+.++....+|+++.+++.-+
T Consensus 240 k~d~~~~~~eqekiR~~eekqeee~ke~e~~~ 271 (591)
T KOG2412|consen 240 KEDEEAELQEQEKIRAEEEKQEEERKEAEEQA 271 (591)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777755666666665543
No 9
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=13.33 E-value=3.8e+02 Score=31.76 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=10.6
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHH
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEK 429 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe 429 (540)
.|+++....+.++.++.++.+++
T Consensus 547 ~l~~~~~~l~~~~~~~~~~a~~e 569 (771)
T TIGR01069 547 ELEQEMEELKERERNKKLELEKE 569 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444444443333
No 10
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=13.29 E-value=3.8e+02 Score=27.83 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhccccccC
Q 009219 429 KAETEIRKLRQTLCFKARP 447 (540)
Q Consensus 429 e~EaeIKkLRksL~fKA~P 447 (540)
+.++|..+||+-|.|+...
T Consensus 95 ~l~~EN~rLr~LL~~~~~~ 113 (283)
T TIGR00219 95 NLKQENVRLRELLNSPLSS 113 (283)
T ss_pred HHHHHHHHHHHHhcCcccc
Confidence 3678999999999999753
Done!