Query 009219
Match_columns 540
No_of_seqs 98 out of 131
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 21:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 29.2 80 0.0027 26.1 5.0 36 409-445 32-68 (72)
2 3mq9_A Bone marrow stromal ant 18.3 1.4E+02 0.0048 30.2 5.5 26 412-438 445-470 (471)
3 3a2a_A Voltage-gated hydrogen 14.5 2.4E+02 0.0082 22.5 4.6 40 394-441 6-48 (58)
4 2jng_A Cullin-7, CUL-7; P53 bi 12.1 94 0.0032 27.4 1.9 27 52-78 2-28 (105)
5 2dgc_A Protein (GCN4); basic d 12.0 3.4E+02 0.012 21.2 5.0 28 407-442 34-61 (63)
6 2fxo_A Myosin heavy chain, car 10.6 3.6E+02 0.012 23.4 5.2 31 401-431 32-62 (129)
7 3bas_A Myosin heavy chain, str 10.5 5.3E+02 0.018 21.2 5.9 24 402-425 34-57 (89)
8 1hjb_A Ccaat/enhancer binding 9.4 6.5E+02 0.022 21.1 6.1 34 407-441 40-73 (87)
9 1gu4_A CAAT/enhancer binding p 9.2 7.1E+02 0.024 20.4 6.1 32 407-439 40-71 (78)
10 1jnm_A Proto-oncogene C-JUN; B 8.9 5E+02 0.017 19.8 4.9 33 406-439 25-57 (62)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.21 E-value=80 Score=26.12 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhc-cccc
Q 009219 409 EEKFNANQIQKLQKQVTLKEKAETEIRKLRQTL-CFKA 445 (540)
Q Consensus 409 eEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL-~fKA 445 (540)
.|.+.+++.-...|+....| ++++|+.||..| .|+.
T Consensus 32 ~eELr~kd~~I~eLEk~L~e-kd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQ-KDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 34577777777777776655 788999999887 5654
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=18.33 E-value=1.4e+02 Score=30.20 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=11.6
Q ss_pred hhhHHHHHHhHHHHhhHHHHHHHHHHh
Q 009219 412 FNANQIQKLQKQVTLKEKAETEIRKLR 438 (540)
Q Consensus 412 ~~AkE~Ek~~lqak~KEe~EaeIKkLR 438 (540)
+...|.|.+.|.++.++ .+++|++||
T Consensus 445 ~~~~~~~~~~~~~~~~~-~~~~~~~~~ 470 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQD-ASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 33444444444444433 444555444
No 3
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=14.51 E-value=2.4e+02 Score=22.49 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=17.6
Q ss_pred ccchHHHHHHHHH---HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhc
Q 009219 394 RLRTEERAARRKE---KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTL 441 (540)
Q Consensus 394 ~~ksdeRAekRKE---KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL 441 (540)
.-|++.+-.|=|+ +|..|.+-.|.. =-++|.||-+|++=|
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~--------c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFS--------CSEKEQEIERLNKLL 48 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 3455555555555 444444443322 223455777776543
No 4
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=12.05 E-value=94 Score=27.41 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.6
Q ss_pred ccccccccccchhHHHHhhhCCCchHH
Q 009219 52 WEKWSSFSSHNKYVEEAERYSRPGSVA 78 (540)
Q Consensus 52 w~~~s~f~~~n~~~ee~~~~~~pg~va 78 (540)
+.+||.|+|.+.|.+=|..-+.||..-
T Consensus 2 fr~rsdF~s~~~Ya~YVr~~l~pGM~V 28 (105)
T 2jng_A 2 SHMRSEFASGNTYALYVRDTLQPGMRV 28 (105)
T ss_dssp --CGGGSSSSHHHHHHHHHHCCTTCEE
T ss_pred CcchhhcccchhHHHHHHhcCCCccEE
Confidence 357999999999999999999999754
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=12.03 E-value=3.4e+02 Score=21.23 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhcc
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 442 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~ 442 (540)
.|+.+....+.|...|. ++|.+||..|.
T Consensus 34 ~Le~~v~~L~~eN~~L~--------~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLE--------NEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHh
Confidence 55666555555555554 47888887653
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=10.56 E-value=3.6e+02 Score=23.42 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHhhHHHH
Q 009219 401 AARRKEKLEEKFNANQIQKLQKQVTLKEKAE 431 (540)
Q Consensus 401 AekRKEKLeEK~~AkE~Ek~~lqak~KEe~E 431 (540)
.+..+..|++++....+|++.|+...+.+.+
T Consensus 32 ~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~ 62 (129)
T 2fxo_A 32 SEARRKELEEKMVSLLQEKNDLQLQVQAEQD 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334447888888888888888777654443
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=10.46 E-value=5.3e+02 Score=21.17 Aligned_cols=24 Identities=29% Similarity=0.084 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHH
Q 009219 402 ARRKEKLEEKFNANQIQKLQKQVT 425 (540)
Q Consensus 402 ekRKEKLeEK~~AkE~Ek~~lqak 425 (540)
+..+..|++++....+|++.|+.+
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333447888888888888888876
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=9.42 E-value=6.5e+02 Score=21.07 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhc
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTL 441 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL 441 (540)
.++.+...++.|..+|+++..+ -+.|+..||.=|
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~-L~~E~~~Lr~ll 73 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQ-LSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6777777788888888887654 566788888743
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=9.25 E-value=7.1e+02 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=24.1
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhh
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQ 439 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRk 439 (540)
.++.+...++.|..+|+++... -+.|+..||.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~-L~~E~~~Lr~ 71 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQ-LSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6777778888888888887654 5667888876
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=8.92 E-value=5e+02 Score=19.85 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=20.9
Q ss_pred HHHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhh
Q 009219 406 EKLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQ 439 (540)
Q Consensus 406 EKLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRk 439 (540)
+.||.+....+.+...|...... -..++..|++
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~-L~~e~~~Lk~ 57 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANM-LREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 38888888888888888775432 2334444443
Done!