Query 009219
Match_columns 540
No_of_seqs 98 out of 131
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 21:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009219.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009219hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eeja2 d.17.3.1 (A:1-60) Disu 5.5 1.2E+02 0.0085 21.9 1.6 12 443-454 19-30 (60)
2 d1t3ba2 d.17.3.1 (A:2-60) Disu 5.4 61 0.0045 23.5 -0.1 12 443-454 18-29 (59)
3 d2awia1 a.35.1.11 (A:2-66) Prg 5.4 1E+02 0.0074 22.7 1.1 13 432-444 5-17 (65)
4 d3b8ma1 d.58.60.1 (A:64-330) E 4.6 3.8E+02 0.028 23.5 4.9 36 407-442 147-182 (267)
5 d3b8pa1 d.58.60.1 (A:54-292) C 4.5 3E+02 0.022 24.1 4.1 36 407-442 117-152 (239)
6 d3b8oa1 d.58.60.1 (A:55-319) L 4.3 3.9E+02 0.028 23.6 4.7 36 407-442 144-179 (265)
7 d2p02a3 d.130.1.1 (A:274-417) 3.8 1.3E+02 0.0092 25.5 0.7 18 38-55 122-139 (144)
8 d1l2pa_ f.23.21.1 (A:) F1F0 AT 3.8 6.9E+02 0.05 17.7 6.2 41 401-441 18-59 (61)
9 d2ba0g2 d.101.1.1 (G:179-257) 3.6 1.5E+02 0.011 21.5 1.0 16 32-47 1-16 (79)
10 d1k4ta1 a.2.8.1 (A:641-712) Eu 3.2 4.3E+02 0.031 19.9 3.2 20 405-424 4-23 (72)
No 1
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.49 E-value=1.2e+02 Score=21.89 Aligned_cols=12 Identities=8% Similarity=0.229 Sum_probs=9.6
Q ss_pred ccccCCCccccc
Q 009219 443 FKARPLPHFYKE 454 (540)
Q Consensus 443 fKA~PmP~Fy~~ 454 (540)
.+.+|+|+||.-
T Consensus 19 V~~spi~GlyeV 30 (60)
T d1eeja2 19 IQPAPVAGMKTV 30 (60)
T ss_dssp EEECSSTTEEEE
T ss_pred EecCCCCCeEEE
Confidence 467899999963
No 2
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=5.43 E-value=61 Score=23.50 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=9.4
Q ss_pred ccccCCCccccc
Q 009219 443 FKARPLPHFYKE 454 (540)
Q Consensus 443 fKA~PmP~Fy~~ 454 (540)
...+|+|+||.-
T Consensus 18 i~~spi~GlyeV 29 (59)
T d1t3ba2 18 IKSSPISGIKTA 29 (59)
T ss_dssp CCBCSSTTEECC
T ss_pred EecCCCCCeEEE
Confidence 457899999964
No 3
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=5.38 E-value=1e+02 Score=22.71 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.7
Q ss_pred HHHHHHhhhcccc
Q 009219 432 TEIRKLRQTLCFK 444 (540)
Q Consensus 432 aeIKkLRksL~fK 444 (540)
.-+|++||+|||-
T Consensus 5 ~~lkqir~elnyh 17 (65)
T d2awia1 5 SVLKQIRQELNYH 17 (65)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hHHHHHHHHhhhh
Confidence 4689999999974
No 4
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=4.57 E-value=3.8e+02 Score=23.48 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhcc
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 442 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~ 442 (540)
.++.|.+..+.+...++.+.|+..+.+|.+|...|.
T Consensus 147 ~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~ 182 (267)
T d3b8ma1 147 KLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLD 182 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999987654
No 5
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=4.54 E-value=3e+02 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhcc
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 442 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~ 442 (540)
.++.+.+..+.+...++...|...+.+|.+|...|.
T Consensus 117 ~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~ 152 (239)
T d3b8pa1 117 NITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALR 152 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999987664
No 6
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=4.27 E-value=3.9e+02 Score=23.59 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=30.8
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhcc
Q 009219 407 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 442 (540)
Q Consensus 407 KLeEK~~AkE~Ek~~lqak~KEe~EaeIKkLRksL~ 442 (540)
.++.+.+..+.+...++...|...+.+|.+|+..|.
T Consensus 144 ~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL~ 179 (265)
T d3b8oa1 144 AWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999987654
No 7
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=3.84 E-value=1.3e+02 Score=25.54 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=15.2
Q ss_pred ceeeeccccccccccccc
Q 009219 38 QSVSFGRFMSESLAWEKW 55 (540)
Q Consensus 38 ~svsfgrf~~~~l~w~~~ 55 (540)
..-.||-|-.+.+.||+=
T Consensus 122 ~TAaYGHFGR~~f~WEk~ 139 (144)
T d2p02a3 122 RTAAYGHFGRDSFPWEVP 139 (144)
T ss_dssp GGSSSCSSSSTTCGGGSC
T ss_pred hccCccCCCCCCCCeecc
Confidence 567889999899999973
No 8
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=3.75 E-value=6.9e+02 Score=17.74 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhHH-HHHHhHHHHhhHHHHHHHHHHhhhc
Q 009219 401 AARRKEKLEEKFNANQ-IQKLQKQVTLKEKAETEIRKLRQTL 441 (540)
Q Consensus 401 AekRKEKLeEK~~AkE-~Ek~~lqak~KEe~EaeIKkLRksL 441 (540)
|.+|...+-+-.+..- .|..++=+..+.+-|.++.+.|.+|
T Consensus 18 A~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 18 ANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433333222 3555555556677777887777766
No 9
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.62 E-value=1.5e+02 Score=21.50 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=10.9
Q ss_pred ccccccceeeeccccc
Q 009219 32 PIHALGQSVSFGRFMS 47 (540)
Q Consensus 32 ~~~~l~~svsfgrf~~ 47 (540)
|++-+-.+||||.|..
T Consensus 1 Pv~~~Pv~vT~~~~~~ 16 (79)
T d2ba0g2 1 PVRDLPVSVTSLIVGN 16 (79)
T ss_dssp CBCCCCEEEEEEEETT
T ss_pred CCCCceEEEEEEEECC
Confidence 4556667788887754
No 10
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.19 E-value=4.3e+02 Score=19.91 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHHHHHhhhHHHHHHhHHH
Q 009219 405 KEKLEEKFNANQIQKLQKQV 424 (540)
Q Consensus 405 KEKLeEK~~AkE~Ek~~lqa 424 (540)
.+.|-+|+.++..+....+.
T Consensus 4 MenLq~KI~~Kk~qi~~a~~ 23 (72)
T d1k4ta1 4 MMNLQTKIDAKKEQLADARR 23 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667777777665555444
Done!