BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009222
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/535 (63%), Positives = 420/535 (78%), Gaps = 2/535 (0%)
Query: 7 IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 66
IY +SFE+ FLE T+ YAAEG K MQ+ +VP+YL HV RL EE +R + YLD +T+K
Sbjct: 193 IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKS 252
Query: 67 LIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIR 125
LIAT E+QLL H++AIL KG L+D +R +DL +Y LFSRV ++ L Q YI+
Sbjct: 253 LIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIK 312
Query: 126 RTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRP 185
G IV++ EKDK MV LL+FK +D I + F KNE F N +K+AFE IN R N+P
Sbjct: 313 AFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPNKP 372
Query: 186 AELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGK 245
AELIAK++D KLRAGNK ++EELE LDK++++FRFI GKDVFEAFYKKDLAKRLL+GK
Sbjct: 373 AELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGK 432
Query: 246 SASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMS 305
SAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q + +P IE++
Sbjct: 433 SASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQN-VPGNIELT 491
Query: 306 VHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPK 365
V++LT GYWPTY PM+V LP E+ Q+IFK FYL K+SGR+L WQ++LGHCVLKAEF +
Sbjct: 492 VNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKE 551
Query: 366 GKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 425
GKKEL VSLFQT+VL++FN+ ++ S ++IK ATGIED ELRRTLQSLACGK RVL K PK
Sbjct: 552 GKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPK 611
Query: 426 GRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIM 485
G+D+ED D F+ N+ F L+RIK+N IQMKETVEE STTERVFQDRQYQ+DAAIVRIM
Sbjct: 612 GKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIM 671
Query: 486 KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540
K RK LSH LL++E++ QLKFP+KPADLKKRIESLIDR+Y+ERDK NP YNY+A
Sbjct: 672 KMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 726
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/535 (63%), Positives = 420/535 (78%), Gaps = 2/535 (0%)
Query: 7 IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 66
IY +SFE+ FLE T+ YAAEG K MQ+ +VP+YL HV RL EE +R + YLD +T+K
Sbjct: 208 IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKS 267
Query: 67 LIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIR 125
LIAT E+QLL H++AIL KG L+D +R +DL +Y LFSRV ++ L Q YI+
Sbjct: 268 LIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIK 327
Query: 126 RTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRP 185
G IV++ EKDK MV LL+FK +D I + F KNE F N +K+AFE IN R N+P
Sbjct: 328 AFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPNKP 387
Query: 186 AELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGK 245
AELIAK++D KLRAGNK ++EELE LDK++++FRFI GKDVFEAFYKKDLAKRLL+GK
Sbjct: 388 AELIAKYVDSKLRAGNKEATDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGK 447
Query: 246 SASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMS 305
SAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q + +P IE++
Sbjct: 448 SASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQN-VPGNIELT 506
Query: 306 VHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPK 365
V++LT GYWPTY PM+V LP E+ Q+IFK FYL K+SGR+L WQ++LGHCVLKAEF +
Sbjct: 507 VNILTMGYWPTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKE 566
Query: 366 GKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPK 425
GKKEL VSLFQT+VL++FN+ ++ S ++IK ATGIED ELRRTLQSLACGK RVL K PK
Sbjct: 567 GKKELQVSLFQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPK 626
Query: 426 GRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIM 485
G+D+ED D F+ N+ F L+RIK+N IQMKETVEE STTERVFQDRQYQ+DAAIVRIM
Sbjct: 627 GKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIM 686
Query: 486 KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540
K RK LSH LL++E++ QLKFP+KPADLKKRIESLIDR+Y+ERDK NP YNY+A
Sbjct: 687 KMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 741
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/542 (62%), Positives = 419/542 (77%), Gaps = 4/542 (0%)
Query: 1 MFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD 60
M + L +Y +SFE FLE T+ YAAEG + MQ+ +VP+YL HV RL EE +R + YLD
Sbjct: 220 MLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 279
Query: 61 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQA 119
ST+KPLIA E+QLL H++AIL KG L+D +R DL +MY LFSRV ++L Q
Sbjct: 280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQH 339
Query: 120 LAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLIN 179
+ YI+ G IV++ EKDKDMV LL+FK +D + E F KNE F N +K++FE IN
Sbjct: 340 WSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFIN 399
Query: 180 LRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAK 239
R N+PAELIAK +D KLRAGNK ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAK
Sbjct: 400 KRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAK 459
Query: 240 RLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP 299
RLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q ++
Sbjct: 460 RLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-- 517
Query: 300 SG-IEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 358
SG I+++V++LT GYWPTY PM+V L E+ Q++FK FYL K+SGR+L WQ +LGH V
Sbjct: 518 SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAV 577
Query: 359 LKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 418
LKAEF +GKKE VSLFQT+VL++FN+ SF++IK ATGIED ELRRTLQSLACGK R
Sbjct: 578 LKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR 637
Query: 419 VLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD 478
VL K PKG++VED D F+FN F L+RIK+N IQMKETVEE STTERVFQDRQYQ+D
Sbjct: 638 VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQID 697
Query: 479 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538
AAIVRIMK RK L H LL++EL+ QLKFP+KP DLKKRIESLIDR+Y+ERDK+NP Y+Y
Sbjct: 698 AAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHY 757
Query: 539 LA 540
+A
Sbjct: 758 VA 759
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/542 (62%), Positives = 419/542 (77%), Gaps = 4/542 (0%)
Query: 1 MFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD 60
M + L +Y +SFE FLE T+ YAAEG + MQ+ +VP+YL HV RL EE +R + YLD
Sbjct: 203 MLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 262
Query: 61 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQA 119
ST+KPLIA E+QLL H++AIL KG L+D +R DL +MY LFSRV ++L Q
Sbjct: 263 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQH 322
Query: 120 LAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLIN 179
+ YI+ G IV++ EKDKDMV LL+FK +D + E F KNE F N +K++FE IN
Sbjct: 323 WSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFIN 382
Query: 180 LRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAK 239
R N+PAELIAK +D KLRAGNK ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAK
Sbjct: 383 KRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAK 442
Query: 240 RLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP 299
RLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I FKQ Q ++
Sbjct: 443 RLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-- 500
Query: 300 SG-IEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 358
SG I+++V++LT GYWPTY PM+V L E+ Q++FK FYL K+SGR+L WQ +LGH V
Sbjct: 501 SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAV 560
Query: 359 LKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 418
LKAEF +GKKE VSLFQT+VL++FN+ SF++IK ATGIED ELRRTLQSLACGK R
Sbjct: 561 LKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR 620
Query: 419 VLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVD 478
VL K PKG++VED D F+FN F L+RIK+N IQMKETVEE STTERVFQDRQYQ+D
Sbjct: 621 VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQID 680
Query: 479 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538
AAIVRIMK RK L H LL++EL+ QLKFP+KP DLKKRIESLIDR+Y+ERDK+NP Y+Y
Sbjct: 681 AAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHY 740
Query: 539 LA 540
+A
Sbjct: 741 VA 742
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 198/556 (35%), Positives = 292/556 (52%), Gaps = 22/556 (3%)
Query: 4 ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVST 63
L +Y ESFE FL T FY E +++QQ+ V +Y+K E RL EE R +YL ST
Sbjct: 208 TLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHEST 267
Query: 64 RKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAM 122
+ L E+ L+E+H+ I F L+D + EDL RMY+L SR+ + L L++ L
Sbjct: 268 QDELARKCEQVLIEKHLE-IFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLET 326
Query: 123 YIRRTGHGIV--MDEEKDKD---MVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYL 177
+I G + E D V ++L+ + + +F+ + F + A
Sbjct: 327 HIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRF 386
Query: 178 IN--------LRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVF 229
IN ++ EL+A++ D L+ +K E ELE TL++V+V+F++I+ KDVF
Sbjct: 387 INNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVF 446
Query: 230 EAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFK 289
+ FY K LAKRL+ SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK
Sbjct: 447 QKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFK 506
Query: 290 QSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLM 349
+ P ++ S+ VL++G WP LP EL F FY S++SGR+L
Sbjct: 507 K--HLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLT 564
Query: 350 WQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTL 409
W L L K + L S FQ +L+ +N + Q + D+T I+ L + L
Sbjct: 565 WLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVL 624
Query: 410 QSLACGKVRVLQKLPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTT 466
Q L K+ VL+ D ++ D G+ R+ +N E +E +T
Sbjct: 625 QILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTH 684
Query: 467 ERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDRE 524
+ + +DR+ + AAIVRIMK RKVL H L+ E+ QL KP +KK I+ LI++E
Sbjct: 685 KNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKE 744
Query: 525 YLERDKNNPQIYNYLA 540
YLER Y+YLA
Sbjct: 745 YLERVDGEKDTYSYLA 760
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 198/556 (35%), Positives = 292/556 (52%), Gaps = 22/556 (3%)
Query: 4 ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVST 63
L +Y ESFE FL T FY E +++QQ+ V +Y+K E RL EE R +YL ST
Sbjct: 224 TLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHEST 283
Query: 64 RKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAM 122
+ L E+ L+E+H+ I F L+D + EDL RMY+L SR+ + L L++ L
Sbjct: 284 QDELARKCEQVLIEKHLE-IFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLET 342
Query: 123 YIRRTGHGIV--MDEEKDKD---MVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYL 177
+I G + E D V ++L+ + + +F+ + F + A
Sbjct: 343 HIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRF 402
Query: 178 IN--------LRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVF 229
IN ++ EL+A++ D L+ +K E ELE TL++V+V+F++I+ KDVF
Sbjct: 403 INNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVF 462
Query: 230 EAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFK 289
+ FY K LAKRL+ SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK
Sbjct: 463 QKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFK 522
Query: 290 QSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLM 349
+ P ++ S+ VL++G WP LP EL F FY S++SGR+L
Sbjct: 523 K--HLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLT 580
Query: 350 WQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTL 409
W L L K + L S FQ +L+ +N + Q + D+T I+ L + L
Sbjct: 581 WLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVL 640
Query: 410 QSLACGKVRVLQKLPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTT 466
Q L K+ VL+ D ++ D G+ R+ +N E +E +T
Sbjct: 641 QILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTH 700
Query: 467 ERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDRE 524
+ + +DR+ + AAIVRIMK RKVL H L+ E+ QL KP +KK I+ LI++E
Sbjct: 701 KNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKE 760
Query: 525 YLERDKNNPQIYNYLA 540
YLER Y+YLA
Sbjct: 761 YLERVDGEKDTYSYLA 776
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 202/363 (55%), Gaps = 7/363 (1%)
Query: 183 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 242
++ EL+A++ D L+ +K E ELE TL++V+V+F++I+ KDVF+ FY K LAKRL+
Sbjct: 6 SKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLV 65
Query: 243 LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGI 302
SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK+ P +
Sbjct: 66 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDL 123
Query: 303 EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAE 362
+ S+ VL++G WP LP EL F FY S++SGR+L W L L
Sbjct: 124 DFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTN 183
Query: 363 FPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422
K + L S FQ +L+ +N + Q + D+T I+ L + LQ L K+ VL+
Sbjct: 184 CFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLED 243
Query: 423 LPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDA 479
D ++ D G+ R+ +N E +E +T + + +DR+ + A
Sbjct: 244 ENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQA 303
Query: 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYN 537
AIVRIMK RKVL H L+ E+ QL KP +KK I+ LI++EYLER Y+
Sbjct: 304 AIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYS 363
Query: 538 YLA 540
YLA
Sbjct: 364 YLA 366
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 215 bits (547), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 198/363 (54%), Gaps = 7/363 (1%)
Query: 183 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 242
++ E +A++ D L+ +K E ELE TL++V+ F+ I+ KDVF+ FY K LAKRL+
Sbjct: 8 SKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRLV 67
Query: 243 LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGI 302
SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK+ P +
Sbjct: 68 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDL 125
Query: 303 EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAE 362
+ S+ VL++G WP LP EL F FY S++SGR+L W L L
Sbjct: 126 DFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTN 185
Query: 363 FPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422
K + L S FQ +L+ +N + Q + D+T I+ L + LQ L K+ VL+
Sbjct: 186 CFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLED 245
Query: 423 LPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDA 479
D ++ D G+ R+ +N E +E +T + + +DR+ + A
Sbjct: 246 ENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQA 305
Query: 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYN 537
AIVRIMK RKVL H L+ E+ QL KP +KK I+ LI++EYLER Y+
Sbjct: 306 AIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYS 365
Query: 538 YLA 540
YLA
Sbjct: 366 YLA 368
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
Query: 7 IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 66
IY +SFE+ FLE T+ YAAEG K MQ+ +VP+YL HV RL EE +R + YLD +T+K
Sbjct: 177 IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKS 236
Query: 67 LIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIR 125
LIAT E+QLL H++AIL KG L+D +R +DL +Y LFSRV ++ L Q YI+
Sbjct: 237 LIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIK 296
Query: 126 RTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQN 183
G IV++ EKDK M L +FK +D I + F KNE F N +K+AFE IN R N
Sbjct: 297 AFGSTIVINPEKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRPN 354
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 136/239 (56%), Gaps = 2/239 (0%)
Query: 183 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 242
++ E +A++ D L+ +K E ELE TL++V+ F+ I+ KDVF+ FY K LAKRL+
Sbjct: 8 SKSPEELARYCDSLLKKSSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLAKRLV 67
Query: 243 LGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGI 302
SAS DAE SMISKLK CG ++T+KL+ MF+DI +SK++NE FK+ P +
Sbjct: 68 HQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDL 125
Query: 303 EMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAE 362
+ S+ VL++G WP LP EL F FY S++SGR+L W L L
Sbjct: 126 DFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTN 185
Query: 363 FPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 421
K + L S FQ +L+ +N + Q + D+T I+ L + LQ L K+ VL+
Sbjct: 186 CFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLE 244
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 80/90 (88%)
Query: 451 NAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP 510
+ IQMKETVEE STTERVFQDRQYQ+DAAIVRIMK RK LSH LL++E++ QLKFP+KP
Sbjct: 6 SGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP 65
Query: 511 ADLKKRIESLIDREYLERDKNNPQIYNYLA 540
ADLKKRIESLIDR+Y+ERDK NP YNY+A
Sbjct: 66 ADLKKRIESLIDRDYMERDKENPNQYNYIA 95
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 210/385 (54%), Gaps = 38/385 (9%)
Query: 185 PAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 242
P EL A + D LR +K + EE+E L +VL +++Q KDVF ++K L +RL+
Sbjct: 7 PEEL-ANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLI 65
Query: 243 LGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQ-SSQARTKLP 299
L SA + E++M+ L+ E G + + NKL MF+DI++S+++N++FK+ + LP
Sbjct: 66 LDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALP 124
Query: 300 SGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 358
+ +++ +L G W + + V LP EL +EFY +SGR+L W + + + +
Sbjct: 125 AD-SVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGI 183
Query: 359 LKAEFPKGKKELAVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACG- 415
+ + G+ +L V+ FQ VL +N +K+SF+++K AT + D ELRRTL SL
Sbjct: 184 ITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFP 243
Query: 416 --KVRVLQKLPK---GRDVEDDDSFVFNEGFT-----APLYRIKVNAI--------QMKE 457
K +VL P+ +D + F N+ F+ R K+N I +M+E
Sbjct: 244 KLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMRE 303
Query: 458 TVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD--LKK 515
EEN E + Q R + AI++IMK RK +S+ L TEL + LK P +K+
Sbjct: 304 --EEN----EGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKE 357
Query: 516 RIESLIDREYLERDKNNPQIYNYLA 540
+IE LI+ +Y+ RD+++ + Y+A
Sbjct: 358 QIEWLIEHKYIRRDESDINTFIYMA 382
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 201/379 (53%), Gaps = 26/379 (6%)
Query: 185 PAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLL 242
P EL A + D LR +K + EE+E L +VL +++Q KDVF ++K L +RL+
Sbjct: 7 PEEL-ANYCDXLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFXRYHKAHLTRRLI 65
Query: 243 LGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQSSQ-ARTKLP 299
L SA + E++ + L+ E G + + NKL F+DI++S+++N++FK+ + + LP
Sbjct: 66 LDISADSEIEENXVEWLR-EVGXPADYVNKLARXFQDIKVSEDLNQAFKEXHKNNKLALP 124
Query: 300 SGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCV 358
+ +++ +L G W + + V LP EL +EFY +SGR+L W + + +
Sbjct: 125 AD-SVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLXSNGI 183
Query: 359 LKAEFPKGKKELAVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACG- 415
+ + G+ +L V+ FQ VL +N +K+SF+++K AT + D ELRRTL SL
Sbjct: 184 ITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFP 243
Query: 416 --KVRVLQKLPK---GRDVEDDDSFVFNEGFT-----APLYRIKVNAIQMKE--TVEENT 463
K +VL P+ +D + F N+ F+ R K+N I + T
Sbjct: 244 KLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERXRE 303
Query: 464 STTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD--LKKRIESLI 521
E + Q R + AI++I K RK +S+ L TEL + LK P +K++IE LI
Sbjct: 304 EENEGIVQLRILRTQEAIIQIXKXRKKISNAQLQTELVEILKNXFLPQKKXIKEQIEWLI 363
Query: 522 DREYLERDKNNPQIYNYLA 540
+ +Y+ RD+++ + Y A
Sbjct: 364 EHKYIRRDESDINTFIYXA 382
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 7/189 (3%)
Query: 7 IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 66
+Y E FE PFLE ++EF+ E K++ ++ Y+K VE R++EE ER + LD ST +P
Sbjct: 200 VYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 259
Query: 67 LIATAERQLLERHISAIL---DKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAM 122
++ ER+L+ +H+ I+ + G ++ +TEDL MY LFSRV N L+++ + ++
Sbjct: 260 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSS 319
Query: 123 YIRRTGHGIVMDEEKDKDMV---SSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLIN 179
Y+R G +V +E + K+ V L + K+ D +SF+ + F TI FEY +N
Sbjct: 320 YLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 379
Query: 180 LRQNRPAEL 188
L P L
Sbjct: 380 LNSRSPEYL 388
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 7/189 (3%)
Query: 7 IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 66
+Y E FE PFLE ++EF+ E K++ ++ Y+K VE R++EE ER + LD ST +P
Sbjct: 178 VYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 237
Query: 67 LIATAERQLLERHISAIL---DKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAM 122
++ ER+L+ +H+ I+ + G ++ +TEDL MY LFSRV N L+++ + ++
Sbjct: 238 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSS 297
Query: 123 YIRRTGHGIVMDEEKDKDMV---SSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLIN 179
Y+R G +V +E + K+ V L + K+ D +SF+ + F TI FEY +N
Sbjct: 298 YLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 357
Query: 180 LRQNRPAEL 188
L P L
Sbjct: 358 LNSRSPEYL 366
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 7 IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 66
+Y E FE PFLE ++EF+ E K++ ++ Y+K VE R++EE ER LD ST +P
Sbjct: 183 VYEEDFEAPFLEXSAEFFQXESQKFLAENSASVYIKKVEARINEEIERVXHCLDKSTEEP 242
Query: 67 LIATAERQLLERHISAIL---DKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAM 122
++ ER+L+ +H I+ + G + +TEDL Y LFSRV N L++ + +
Sbjct: 243 IVKVVERELISKHXKTIVEXENSGLVHXLKNGKTEDLGCXYKLFSRVPNGLKTXCECXSS 302
Query: 123 YIRRTGHGIVMDEEKDKDMVS---SLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLIN 179
Y+R G +V +E + K+ V L + K+ D +SF+ + F TI FEY +N
Sbjct: 303 YLREQGKALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 362
Query: 180 L 180
L
Sbjct: 363 L 363
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 7/181 (3%)
Query: 5 LGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTR 64
L +Y ESFE FL T FY E +++QQ+ V +Y+K E RL EE R +YL ST+
Sbjct: 211 LTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQ 270
Query: 65 KPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMY 123
L E+ L+E+H+ I F L+D + EDL RMY+L SR+ + L L++ L +
Sbjct: 271 DELARKCEQVLIEKHLE-IFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETH 329
Query: 124 IRRTGHGIV--MDEEKDKD---MVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLI 178
I G + E D V ++L+ + + +F+ + F + A I
Sbjct: 330 IHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFI 389
Query: 179 N 179
N
Sbjct: 390 N 390
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 452 AIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIK 509
A + E+ E T ++V DR+++++AAIVRIMK+RK + H +L+ E+ QQLK F
Sbjct: 2 AAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPS 61
Query: 510 PADLKKRIESLIDREYLERDKNNPQIYNYLA 540
P +KKRIE LI+REYL R + ++Y Y+A
Sbjct: 62 PVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a
Resolution
Length = 391
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 5 LGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYL----D 60
L IY ++FEK +L+ T FY + Y+QQ+ V +Y+K+ + +L EE +R L YL +
Sbjct: 195 LQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRE 254
Query: 61 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQA 119
++ + L+ L+ IL + M+ + TE L M+SL +V N +E + +
Sbjct: 255 CNSVEALMECCVNALVTSFKETILAECQGMI-KRNETEKLHLMFSLMDKVPNGIEPMLKD 313
Query: 120 LAMYIRRTG--------HGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIK 171
L +I G I D EK ++ + +L + +++F + F
Sbjct: 314 LEEHIISAGLADMVAAAETITTDSEKYREQLDTLFN---RFSKLVKEAFQDDPRFLTARD 370
Query: 172 DAFEYLIN 179
A++ ++N
Sbjct: 371 KAYKAVVN 378
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 471 QDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLER 528
+DR+ + AAIVRIMK RKVL H L+ E+ QL KP +KK I+ LI++EYLER
Sbjct: 6 EDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLER 65
Query: 529 DKNNPQIYNYLA 540
Y+YLA
Sbjct: 66 VDGEKDTYSYLA 77
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 472 DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQ--LKFPIKPADLKKRIESLIDREYLERD 529
+RQ ++A IVRIMK ++ L HT L+ E Q +F K + +K+ I+SLI + YL+R
Sbjct: 7 ERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRG 66
Query: 530 KNNPQIYNYLA 540
++ + Y YLA
Sbjct: 67 -DDGESYAYLA 76
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 472 DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQ--LKFPIKPADLKKRIESLIDREYLERD 529
+RQ ++A IVRIMK ++ L HT L+ E Q +F K + +K+ I+SLI + YL+R
Sbjct: 19 ERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRG 78
Query: 530 KNNPQIYNYLA 540
++ + Y YLA
Sbjct: 79 -DDGESYAYLA 88
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 402 DKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRI----------KVN 451
D + T Q+LA ++ Q + KGR + D FN+ F I K+N
Sbjct: 67 DGAIEVTKQNLAKFNIKNCQ-IIKGRAEDVLDKLEFNKAFIGGTKNIEKIIEILDKKKIN 125
Query: 452 AIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLS-HTLL 496
I V EN + F+ R Y VDA V I +K+ S H L
Sbjct: 126 HIVANTIVLENAAKIINEFESRGYNVDAVNVFISYAKKIPSGHXFL 171
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 264 GSQFTNKLEGMFKDIELS-KEINESFKQSSQARTKLPSGI-EMSVHVLTTGYWPTYPPMD 321
G+Q + G + +E++ +E++E+ K + R+KL SG+ + H++T P++
Sbjct: 237 GTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNLGAHIIT--------PLE 288
Query: 322 VRLPHELNV 330
+ LP+ L+V
Sbjct: 289 ISLPNTLSV 297
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 264 GSQFTNKLEGMFKDIELS-KEINESFKQSSQARTKLPSGI-EMSVHVLTTGYWPTYPPMD 321
G+Q + G + E++ +E++E+ K + R+KL SG+ + H++T P++
Sbjct: 237 GTQNVPGIVGAARAXEIAVEELSEAAKHXEKLRSKLVSGLXNLGAHIIT--------PLE 288
Query: 322 VRLPHELNV 330
+ LP+ L+V
Sbjct: 289 ISLPNTLSV 297
>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast
pdb|3CQ0|B Chain B, Crystal Structure Of Tal2_yeast
Length = 339
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 187 ELIAKFLDEKLRAGNKG--TSEEELEGTLDKVLVLF-----RFIQGK-----DVFEAFYK 234
E A+F+D + G K T E++E +DK+LV F + + G+ D +F K
Sbjct: 58 EKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDARLSFDK 117
Query: 235 KDLAKRLL----LGKSASIDAEKSMISKLKTECGSQFTNKLE 272
K K+ L L K A + E+ +I T G Q +LE
Sbjct: 118 KATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELE 159
>pdb|3CL6|A Chain A, Crystal Structure Of Puue Allantoinase
pdb|3CL6|B Chain B, Crystal Structure Of Puue Allantoinase
pdb|3CL7|A Chain A, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL7|B Chain B, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL8|A Chain A, Crystal Structure Of Puue Allantoinase Complexed With Aca
pdb|3CL8|B Chain B, Crystal Structure Of Puue Allantoinase Complexed With Aca
Length = 308
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 36/148 (24%)
Query: 66 PLIATAERQLLERH---ISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLR----- 117
PL A +RH I A++ G + G+R D Q M R + LE++R
Sbjct: 96 PLTIFAVAMAAQRHPDVIRAMVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTEL 155
Query: 118 ---QALAMYIRRTGHG---IVMDE-----------------EKDKDMVSSLLEFKASLDT 154
+ L Y RTG +VM+E E + L +LDT
Sbjct: 156 TGERPLGWYTGRTGPNTRRLVMEEGGFLYDCDTYDDDLPYWEPNNPTGKPHLVIPYTLDT 215
Query: 155 -----IWEQSFSKNEAFCNTIKDAFEYL 177
Q F+K + F +KDAF+ L
Sbjct: 216 NDMRFTQVQGFNKGDDFFEYLKDAFDVL 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,758,888
Number of Sequences: 62578
Number of extensions: 597510
Number of successful extensions: 1643
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1572
Number of HSP's gapped (non-prelim): 36
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)