Query 009222
Match_columns 540
No_of_seqs 166 out of 987
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 100.0 6E-107 2E-111 901.9 56.2 539 1-540 220-759 (759)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 1E-104 3E-109 884.3 50.5 531 5-540 209-760 (760)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 4E-78 1.4E-82 618.7 37.5 358 182-540 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 3.4E-33 1.2E-37 289.3 18.3 197 1-198 189-397 (410)
5 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 7.7E-32 2.6E-36 274.6 17.4 182 1-182 171-353 (354)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 2.1E-30 7E-35 265.1 11.1 181 1-181 172-364 (364)
7 2wzk_A Cullin-5, CUL-5; UBL co 100.0 3.8E-29 1.3E-33 258.0 15.1 178 4-182 194-381 (391)
8 2do7_A Cullin-4B, CUL-4B; heli 99.9 1.4E-26 4.7E-31 186.6 5.7 93 448-540 3-95 (101)
9 3o2p_E Cell division control p 99.9 2.6E-25 8.7E-30 174.8 6.6 80 460-540 7-88 (88)
10 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 2.1E-25 7.1E-30 171.1 4.2 73 468-540 3-77 (77)
11 1iuy_A Cullin-3 homologue; win 99.9 1.1E-25 3.6E-30 179.0 1.5 84 457-540 7-92 (92)
12 1wi9_A Protein C20ORF116 homol 92.1 0.1 3.6E-06 38.4 3.1 55 480-540 11-65 (72)
13 2jt1_A PEFI protein; solution 91.8 0.11 3.9E-06 39.3 3.2 49 377-427 7-61 (77)
14 1qgp_A Protein (double strande 91.3 0.19 6.4E-06 38.1 3.9 57 376-439 16-75 (77)
15 3lmm_A Uncharacterized protein 91.0 0.082 2.8E-06 56.5 2.3 136 373-533 429-567 (583)
16 3cuo_A Uncharacterized HTH-typ 90.5 0.46 1.6E-05 37.3 5.8 49 373-423 23-71 (99)
17 2htj_A P fimbrial regulatory p 89.8 0.69 2.4E-05 35.1 6.1 60 377-440 3-62 (81)
18 1xn7_A Hypothetical protein YH 89.5 0.26 9.1E-06 37.3 3.3 44 378-423 6-49 (78)
19 1qbj_A Protein (double-strande 89.3 0.41 1.4E-05 36.6 4.4 58 376-440 12-72 (81)
20 3jth_A Transcription activator 89.3 0.84 2.9E-05 35.9 6.5 49 373-424 22-70 (98)
21 2k02_A Ferrous iron transport 88.8 0.32 1.1E-05 37.7 3.4 44 378-423 6-49 (87)
22 3tgn_A ADC operon repressor AD 88.4 0.46 1.6E-05 40.2 4.6 51 371-424 35-85 (146)
23 3g3z_A NMB1585, transcriptiona 87.9 0.41 1.4E-05 40.5 4.0 51 372-424 29-79 (145)
24 3hsr_A HTH-type transcriptiona 87.9 0.35 1.2E-05 40.9 3.5 51 372-424 34-84 (140)
25 1y0u_A Arsenical resistance op 87.8 0.97 3.3E-05 35.4 5.9 56 373-440 30-85 (96)
26 1xn7_A Hypothetical protein YH 87.8 0.39 1.3E-05 36.4 3.3 45 479-529 5-49 (78)
27 1sfx_A Conserved hypothetical 87.7 0.48 1.6E-05 37.7 4.1 50 372-423 18-67 (109)
28 1oyi_A Double-stranded RNA-bin 87.7 0.51 1.7E-05 36.0 3.8 51 371-424 14-64 (82)
29 1xmk_A Double-stranded RNA-spe 87.6 0.52 1.8E-05 35.7 3.9 50 373-424 10-60 (79)
30 3ech_A MEXR, multidrug resista 87.0 0.33 1.1E-05 41.1 2.8 51 372-424 35-85 (142)
31 3nrv_A Putative transcriptiona 86.7 0.52 1.8E-05 40.0 4.0 51 372-424 38-88 (148)
32 4hbl_A Transcriptional regulat 86.4 0.44 1.5E-05 40.7 3.3 51 372-424 39-89 (149)
33 3cdh_A Transcriptional regulat 86.3 0.77 2.6E-05 39.3 4.9 51 372-424 41-91 (155)
34 3r0a_A Putative transcriptiona 86.2 0.69 2.4E-05 38.3 4.3 52 370-423 22-75 (123)
35 3oop_A LIN2960 protein; protei 86.0 0.38 1.3E-05 40.7 2.6 51 372-424 35-85 (143)
36 1u2w_A CADC repressor, cadmium 85.6 1.4 4.7E-05 36.4 5.9 50 373-424 41-90 (122)
37 2fbh_A Transcriptional regulat 85.5 0.67 2.3E-05 39.1 4.0 51 372-424 35-86 (146)
38 2qww_A Transcriptional regulat 85.4 0.67 2.3E-05 39.6 4.1 49 372-422 39-87 (154)
39 2k02_A Ferrous iron transport 85.2 0.48 1.6E-05 36.7 2.6 44 480-529 6-49 (87)
40 1sfu_A 34L protein; protein/Z- 85.2 1.1 3.6E-05 33.5 4.3 43 380-424 21-63 (75)
41 3eco_A MEPR; mutlidrug efflux 85.1 0.57 1.9E-05 39.3 3.4 51 372-424 29-81 (139)
42 2fu4_A Ferric uptake regulatio 85.0 1 3.5E-05 34.2 4.5 52 371-424 14-72 (83)
43 2frh_A SARA, staphylococcal ac 85.0 0.45 1.6E-05 39.6 2.6 51 372-424 35-87 (127)
44 2d1h_A ST1889, 109AA long hypo 84.8 1.1 3.8E-05 35.5 4.9 51 372-424 19-70 (109)
45 2gxg_A 146AA long hypothetical 84.7 0.86 2.9E-05 38.4 4.4 49 372-423 35-83 (146)
46 1bja_A Transcription regulator 84.6 0.84 2.9E-05 35.9 3.8 49 371-421 13-62 (95)
47 1p6r_A Penicillinase repressor 84.5 1.1 3.6E-05 34.0 4.3 59 478-539 11-69 (82)
48 3bj6_A Transcriptional regulat 84.4 0.77 2.6E-05 39.1 3.9 51 372-424 38-88 (152)
49 3bro_A Transcriptional regulat 84.2 0.78 2.7E-05 38.4 3.8 51 372-424 32-84 (141)
50 3k0l_A Repressor protein; heli 84.2 0.54 1.9E-05 40.8 2.9 51 372-424 44-94 (162)
51 1tbx_A ORF F-93, hypothetical 84.0 0.73 2.5E-05 36.3 3.3 50 372-423 6-59 (99)
52 2dk5_A DNA-directed RNA polyme 84.0 0.56 1.9E-05 36.7 2.5 52 369-422 15-68 (91)
53 3bpv_A Transcriptional regulat 83.9 0.86 3E-05 38.0 4.0 50 372-423 27-76 (138)
54 3pqk_A Biofilm growth-associat 83.8 2.2 7.5E-05 33.7 6.2 61 373-440 22-82 (102)
55 1jgs_A Multiple antibiotic res 83.7 0.63 2.2E-05 38.9 3.0 50 372-423 32-81 (138)
56 3e6m_A MARR family transcripti 83.7 0.59 2E-05 40.5 2.9 51 372-424 51-101 (161)
57 2fa5_A Transcriptional regulat 83.3 0.91 3.1E-05 39.1 4.0 51 372-424 47-97 (162)
58 2e1c_A Putative HTH-type trans 83.3 1 3.4E-05 39.8 4.2 66 352-422 8-73 (171)
59 3lwf_A LIN1550 protein, putati 83.0 2.2 7.5E-05 37.1 6.3 60 375-441 30-90 (159)
60 2pex_A Transcriptional regulat 82.7 0.84 2.9E-05 39.0 3.5 51 372-424 45-95 (153)
61 3deu_A Transcriptional regulat 82.6 0.89 3E-05 39.7 3.7 51 372-424 51-102 (166)
62 3bdd_A Regulatory protein MARR 82.4 0.77 2.6E-05 38.5 3.0 50 372-423 29-78 (142)
63 1lj9_A Transcriptional regulat 82.2 0.7 2.4E-05 38.9 2.7 50 372-423 27-76 (144)
64 3t8r_A Staphylococcus aureus C 82.2 2.3 7.8E-05 36.2 6.0 58 376-440 15-73 (143)
65 2heo_A Z-DNA binding protein 1 82.0 0.79 2.7E-05 33.5 2.5 46 375-422 11-57 (67)
66 2hr3_A Probable transcriptiona 82.0 0.87 3E-05 38.5 3.3 51 372-424 33-84 (147)
67 2nyx_A Probable transcriptiona 82.0 0.7 2.4E-05 40.4 2.7 50 372-423 43-92 (168)
68 3s2w_A Transcriptional regulat 81.9 0.58 2E-05 40.4 2.1 51 372-424 48-98 (159)
69 3bja_A Transcriptional regulat 81.9 0.51 1.7E-05 39.5 1.7 50 372-423 31-80 (139)
70 2nnn_A Probable transcriptiona 81.6 0.94 3.2E-05 37.8 3.3 50 372-423 36-85 (140)
71 3fm5_A Transcriptional regulat 81.4 1.2 4E-05 37.9 3.9 51 372-424 37-88 (150)
72 1p6r_A Penicillinase repressor 81.4 1.2 4.1E-05 33.7 3.5 51 372-424 7-61 (82)
73 2rdp_A Putative transcriptiona 81.3 0.86 3E-05 38.7 3.0 50 372-423 40-89 (150)
74 2l02_A Uncharacterized protein 81.2 3 0.0001 31.5 5.4 37 378-414 12-48 (82)
75 2k4b_A Transcriptional regulat 80.9 0.3 1E-05 38.9 -0.1 60 478-540 37-96 (99)
76 2a61_A Transcriptional regulat 80.7 1 3.5E-05 37.8 3.3 50 372-423 31-80 (145)
77 2bv6_A MGRA, HTH-type transcri 80.5 0.6 2E-05 39.3 1.7 50 372-423 35-84 (142)
78 3cjn_A Transcriptional regulat 80.4 1.2 4E-05 38.4 3.6 50 372-423 50-99 (162)
79 2eth_A Transcriptional regulat 80.4 0.98 3.4E-05 38.6 3.1 50 372-423 42-91 (154)
80 1s3j_A YUSO protein; structura 80.4 0.74 2.5E-05 39.3 2.3 50 372-423 35-84 (155)
81 1qgp_A Protein (double strande 80.3 0.89 3.1E-05 34.3 2.4 53 478-536 16-71 (77)
82 3k69_A Putative transcription 80.2 1.3 4.6E-05 38.6 3.9 59 375-440 15-73 (162)
83 1ku9_A Hypothetical protein MJ 80.2 2.3 7.8E-05 35.8 5.4 51 372-424 24-75 (152)
84 2obp_A Putative DNA-binding pr 79.9 1.3 4.5E-05 34.9 3.3 49 372-422 14-68 (96)
85 3jw4_A Transcriptional regulat 79.9 0.55 1.9E-05 40.0 1.2 51 372-424 39-91 (148)
86 1z91_A Organic hydroperoxide r 79.8 0.88 3E-05 38.4 2.5 51 372-424 38-88 (147)
87 4b8x_A SCO5413, possible MARR- 79.7 0.96 3.3E-05 38.6 2.7 51 372-424 33-85 (147)
88 3f3x_A Transcriptional regulat 79.6 0.84 2.9E-05 38.5 2.3 49 372-423 35-83 (144)
89 1ylf_A RRF2 family protein; st 79.4 2.3 7.8E-05 36.4 5.0 58 375-440 17-74 (149)
90 1ub9_A Hypothetical protein PH 79.4 1.4 4.8E-05 34.4 3.5 49 372-422 14-62 (100)
91 2fbi_A Probable transcriptiona 79.3 1.1 3.7E-05 37.5 2.9 50 372-423 34-83 (142)
92 2pn6_A ST1022, 150AA long hypo 79.2 2.4 8.2E-05 36.1 5.1 48 373-422 2-49 (150)
93 2xub_A DNA-directed RNA polyme 79.0 1.3 4.3E-05 46.8 3.9 134 378-531 23-162 (534)
94 1qbj_A Protein (double-strande 79.0 1.7 5.9E-05 33.0 3.6 53 478-536 12-67 (81)
95 2y75_A HTH-type transcriptiona 78.6 3.5 0.00012 34.1 5.9 48 386-440 24-71 (129)
96 2w25_A Probable transcriptiona 78.4 2.3 7.9E-05 36.3 4.8 49 372-422 5-53 (150)
97 3nqo_A MARR-family transcripti 78.2 1.1 3.9E-05 40.0 2.8 51 372-424 39-91 (189)
98 2jt1_A PEFI protein; solution 78.2 1.2 4E-05 33.6 2.4 57 472-534 4-62 (77)
99 3kp7_A Transcriptional regulat 78.0 0.93 3.2E-05 38.6 2.1 48 372-422 36-83 (151)
100 4aik_A Transcriptional regulat 77.9 1.7 5.9E-05 37.2 3.8 51 372-424 29-80 (151)
101 2fxa_A Protease production reg 77.7 1.1 3.9E-05 40.7 2.7 51 372-424 46-96 (207)
102 2jsc_A Transcriptional regulat 77.4 2.7 9.4E-05 34.3 4.8 62 372-440 19-80 (118)
103 3boq_A Transcriptional regulat 77.0 0.95 3.3E-05 38.9 1.9 51 372-424 45-96 (160)
104 1bby_A RAP30; average structur 76.9 5.6 0.00019 29.1 5.6 57 376-442 10-66 (69)
105 2ia0_A Putative HTH-type trans 76.8 2.5 8.5E-05 37.1 4.6 54 367-422 10-63 (171)
106 2cfx_A HTH-type transcriptiona 76.5 2.9 9.9E-05 35.4 4.8 49 372-422 3-51 (144)
107 2oqg_A Possible transcriptiona 76.4 1.8 6E-05 34.9 3.3 48 373-423 20-67 (114)
108 2fu4_A Ferric uptake regulatio 76.3 4.5 0.00015 30.4 5.4 59 479-538 20-80 (83)
109 2v79_A DNA replication protein 76.3 2 6.8E-05 36.2 3.6 52 369-422 27-83 (135)
110 1r1u_A CZRA, repressor protein 76.2 3.2 0.00011 33.1 4.7 48 373-423 25-72 (106)
111 1tbx_A ORF F-93, hypothetical 76.1 3.4 0.00012 32.3 4.8 56 478-535 10-65 (99)
112 2wte_A CSA3; antiviral protein 75.9 1.6 5.5E-05 40.9 3.3 50 372-423 150-199 (244)
113 1xd7_A YWNA; structural genomi 75.6 3.7 0.00013 34.9 5.3 55 376-440 13-67 (145)
114 2htj_A P fimbrial regulatory p 75.3 2.6 8.9E-05 31.7 3.8 44 480-529 4-47 (81)
115 2kko_A Possible transcriptiona 75.2 1.7 5.9E-05 34.9 2.9 47 374-423 25-71 (108)
116 1i1g_A Transcriptional regulat 74.9 2.3 7.9E-05 35.7 3.8 49 373-423 3-51 (141)
117 2vn2_A DNAD, chromosome replic 74.9 2.3 8E-05 35.4 3.7 53 370-424 28-85 (128)
118 2cg4_A Regulatory protein ASNC 74.3 3.2 0.00011 35.4 4.6 49 372-422 6-54 (152)
119 3r4k_A Transcriptional regulat 74.0 2.5 8.4E-05 40.0 4.1 57 377-441 9-66 (260)
120 2dbb_A Putative HTH-type trans 73.9 3.3 0.00011 35.3 4.6 49 372-422 7-55 (151)
121 2xrn_A HTH-type transcriptiona 73.7 3.5 0.00012 38.4 5.0 56 377-440 9-65 (241)
122 2p5v_A Transcriptional regulat 72.4 3 0.0001 36.1 3.9 49 372-422 8-56 (162)
123 2cyy_A Putative HTH-type trans 72.4 3.4 0.00012 35.3 4.2 49 372-422 5-53 (151)
124 1sd4_A Penicillinase repressor 72.2 2.5 8.5E-05 34.6 3.2 59 478-539 12-70 (126)
125 2g9w_A Conserved hypothetical 71.6 3.4 0.00012 34.7 4.0 50 372-423 7-61 (138)
126 3f6o_A Probable transcriptiona 71.0 3.4 0.00012 33.7 3.7 48 373-423 17-64 (118)
127 1sd4_A Penicillinase repressor 70.4 2.5 8.5E-05 34.6 2.8 51 371-423 7-61 (126)
128 1okr_A MECI, methicillin resis 69.4 1.9 6.7E-05 35.1 1.9 51 371-423 7-61 (123)
129 3r0a_A Putative transcriptiona 68.9 4.7 0.00016 33.2 4.2 47 477-529 27-75 (123)
130 2lkp_A Transcriptional regulat 68.8 5.4 0.00019 32.3 4.6 47 373-422 31-77 (119)
131 3mq0_A Transcriptional repress 68.4 4.1 0.00014 38.8 4.3 55 377-440 33-88 (275)
132 2p5k_A Arginine repressor; DNA 68.2 6.6 0.00023 27.6 4.4 37 376-412 7-48 (64)
133 3cuo_A Uncharacterized HTH-typ 67.4 4.8 0.00016 31.1 3.8 54 477-536 25-78 (99)
134 3u2r_A Regulatory protein MARR 67.2 2.3 7.7E-05 36.9 2.0 51 372-424 44-96 (168)
135 4fx0_A Probable transcriptiona 67.2 4.4 0.00015 34.4 3.8 48 372-421 31-83 (148)
136 1fse_A GERE; helix-turn-helix 67.1 9 0.00031 27.7 5.1 40 372-413 12-51 (74)
137 2g9w_A Conserved hypothetical 66.5 4.5 0.00015 33.9 3.7 59 477-538 10-69 (138)
138 1p4x_A Staphylococcal accessor 66.5 3.6 0.00012 38.6 3.3 51 372-424 156-208 (250)
139 3b73_A PHIH1 repressor-like pr 66.4 5.6 0.00019 32.1 4.0 50 372-423 11-62 (111)
140 1hsj_A Fusion protein consisti 66.3 3.4 0.00012 42.7 3.4 53 370-424 400-454 (487)
141 3i4p_A Transcriptional regulat 66.1 7.5 0.00026 33.6 5.2 46 375-422 4-49 (162)
142 3ulq_B Transcriptional regulat 65.7 7.2 0.00025 30.1 4.4 43 369-413 27-69 (90)
143 2l01_A Uncharacterized protein 65.4 11 0.00039 28.0 5.1 37 378-414 14-51 (77)
144 2zkz_A Transcriptional repress 65.4 4.5 0.00015 31.7 3.2 48 372-422 25-72 (99)
145 2pg4_A Uncharacterized protein 64.9 3.8 0.00013 31.8 2.7 45 375-421 16-62 (95)
146 1r1t_A Transcriptional repress 64.5 11 0.00036 30.9 5.5 47 373-422 45-91 (122)
147 1mkm_A ICLR transcriptional re 63.7 9.2 0.00031 35.6 5.6 55 377-440 11-66 (249)
148 2k4b_A Transcriptional regulat 63.7 1.1 3.7E-05 35.7 -0.8 52 371-424 32-87 (99)
149 1je8_A Nitrate/nitrite respons 63.0 11 0.00038 28.3 5.0 40 372-413 22-61 (82)
150 2yu3_A DNA-directed RNA polyme 62.9 8.1 0.00028 30.2 4.2 51 371-423 34-86 (95)
151 1p4x_A Staphylococcal accessor 62.9 2.7 9.4E-05 39.5 1.7 51 372-424 32-84 (250)
152 1okr_A MECI, methicillin resis 62.8 4.8 0.00016 32.7 3.1 57 480-539 14-70 (123)
153 1q1h_A TFE, transcription fact 62.1 5.2 0.00018 31.9 3.1 44 378-423 22-66 (110)
154 2qlz_A Transcription factor PF 61.5 13 0.00046 34.2 6.2 65 373-440 11-77 (232)
155 2xub_A DNA-directed RNA polyme 61.5 27 0.00092 36.6 9.3 117 388-529 287-407 (534)
156 2o0y_A Transcriptional regulat 60.9 9 0.00031 36.0 5.0 54 378-440 27-81 (260)
157 2v79_A DNA replication protein 59.2 7.6 0.00026 32.6 3.7 34 489-528 50-83 (135)
158 1oyi_A Double-stranded RNA-bin 58.9 12 0.00041 28.4 4.3 50 478-534 19-68 (82)
159 2x4h_A Hypothetical protein SS 58.9 7.8 0.00027 32.2 3.8 50 371-422 10-63 (139)
160 3i4p_A Transcriptional regulat 58.7 15 0.0005 31.7 5.7 47 477-529 4-50 (162)
161 1uly_A Hypothetical protein PH 58.4 14 0.00047 33.0 5.5 49 372-423 18-66 (192)
162 1x3u_A Transcriptional regulat 58.1 14 0.00048 27.0 4.8 40 372-413 17-56 (79)
163 2hzt_A Putative HTH-type trans 57.9 9.3 0.00032 30.3 3.9 46 375-423 15-61 (107)
164 3c57_A Two component transcrip 57.4 12 0.00042 28.9 4.5 40 372-413 28-67 (95)
165 2fbk_A Transcriptional regulat 56.8 2.4 8.1E-05 37.4 0.1 51 372-424 67-120 (181)
166 2vn2_A DNAD, chromosome replic 56.5 23 0.00079 29.1 6.3 49 476-530 36-85 (128)
167 2qvo_A Uncharacterized protein 56.4 4.5 0.00015 31.4 1.7 47 372-420 10-60 (95)
168 1ldd_A APC2WHB, anaphase promo 56.2 24 0.00081 26.1 5.5 57 473-530 5-68 (74)
169 1on2_A Transcriptional regulat 56.2 5.7 0.0002 33.2 2.5 42 380-423 14-55 (142)
170 1z7u_A Hypothetical protein EF 55.6 7.5 0.00026 31.2 3.0 48 373-423 21-69 (112)
171 2ia2_A Putative transcriptiona 55.5 12 0.00039 35.3 4.8 55 377-441 24-79 (265)
172 2b0l_A GTP-sensing transcripti 55.5 7.2 0.00025 30.9 2.8 54 478-537 30-85 (102)
173 2g7u_A Transcriptional regulat 54.5 13 0.00046 34.7 5.0 56 376-441 16-72 (257)
174 3kp7_A Transcriptional regulat 54.5 5 0.00017 33.9 1.8 51 477-534 39-93 (151)
175 3f6v_A Possible transcriptiona 53.9 11 0.00039 32.1 4.0 49 372-423 56-104 (151)
176 2p4w_A Transcriptional regulat 53.8 14 0.00048 33.3 4.8 65 373-440 14-79 (202)
177 3f8b_A Transcriptional regulat 52.7 36 0.0012 27.3 6.7 57 472-529 8-66 (116)
178 2qlz_A Transcription factor PF 52.7 12 0.00042 34.5 4.3 46 376-423 166-211 (232)
179 2hzt_A Putative HTH-type trans 52.6 20 0.00067 28.3 5.0 53 480-538 18-72 (107)
180 3jth_A Transcription activator 52.3 15 0.0005 28.4 4.1 54 478-538 25-78 (98)
181 3b73_A PHIH1 repressor-like pr 51.7 15 0.00051 29.6 4.1 48 477-530 14-63 (111)
182 4a0z_A Transcription factor FA 51.6 14 0.00048 32.9 4.4 46 375-422 13-58 (190)
183 3k0l_A Repressor protein; heli 51.5 13 0.00045 31.6 4.1 48 477-530 47-94 (162)
184 3tgn_A ADC operon repressor AD 51.5 12 0.00041 31.0 3.8 46 478-530 40-85 (146)
185 3df8_A Possible HXLR family tr 50.8 18 0.00062 28.9 4.6 49 372-423 25-76 (111)
186 2p7v_B Sigma-70, RNA polymeras 50.6 27 0.00092 24.8 5.1 41 372-412 6-49 (68)
187 1sfx_A Conserved hypothetical 50.4 6.7 0.00023 30.6 1.9 48 477-530 21-68 (109)
188 4a5n_A Uncharacterized HTH-typ 50.3 20 0.00067 29.8 4.8 48 373-423 25-73 (131)
189 2dk5_A DNA-directed RNA polyme 50.2 15 0.00053 28.3 3.9 45 478-528 22-68 (91)
190 3cuq_B Vacuolar protein-sortin 49.8 33 0.0011 31.2 6.6 51 372-424 152-202 (218)
191 3hsr_A HTH-type transcriptiona 49.4 9 0.00031 31.8 2.6 48 477-530 37-84 (140)
192 3cdh_A Transcriptional regulat 49.0 20 0.00067 30.1 4.8 49 476-530 43-91 (155)
193 2qww_A Transcriptional regulat 48.6 12 0.00041 31.4 3.4 45 478-528 43-87 (154)
194 1yyv_A Putative transcriptiona 48.5 15 0.00051 30.5 3.8 49 372-423 33-82 (131)
195 3bja_A Transcriptional regulat 48.3 12 0.00043 30.5 3.4 46 478-529 35-80 (139)
196 2eth_A Transcriptional regulat 48.2 17 0.00057 30.6 4.2 47 477-529 45-91 (154)
197 2jpc_A SSRB; DNA binding prote 48.1 17 0.00057 25.1 3.5 35 377-413 4-38 (61)
198 2lnb_A Z-DNA-binding protein 1 48.1 12 0.00041 27.8 2.7 37 377-413 22-59 (80)
199 1i1g_A Transcriptional regulat 47.8 12 0.00041 31.1 3.2 48 477-530 5-52 (141)
200 1tty_A Sigma-A, RNA polymerase 47.6 26 0.00088 26.4 4.8 41 372-412 19-62 (87)
201 2fsw_A PG_0823 protein; alpha- 47.5 20 0.00067 28.3 4.3 52 480-538 29-83 (107)
202 3f8m_A GNTR-family protein tra 47.2 20 0.00069 33.3 4.9 53 476-537 22-75 (248)
203 2fsw_A PG_0823 protein; alpha- 46.6 16 0.00055 28.8 3.6 46 375-423 26-72 (107)
204 3oop_A LIN2960 protein; protei 46.6 10 0.00034 31.5 2.5 46 479-530 40-85 (143)
205 2oqg_A Possible transcriptiona 46.5 12 0.0004 29.7 2.8 49 477-532 22-70 (114)
206 1tc3_C Protein (TC3 transposas 46.5 24 0.00083 22.5 4.1 33 378-412 13-45 (51)
207 2rnj_A Response regulator prot 46.5 13 0.00045 28.4 3.0 40 372-413 30-69 (91)
208 2frh_A SARA, staphylococcal ac 46.2 13 0.00044 30.4 3.1 45 479-529 40-86 (127)
209 2gxg_A 146AA long hypothetical 46.1 32 0.0011 28.2 5.7 47 477-530 38-84 (146)
210 2pn6_A ST1022, 150AA long hypo 45.5 19 0.00064 30.3 4.1 47 477-529 4-50 (150)
211 2fe3_A Peroxide operon regulat 45.1 40 0.0014 28.3 6.1 65 370-439 18-88 (145)
212 2dbb_A Putative HTH-type trans 45.0 17 0.00059 30.6 3.8 46 477-528 10-55 (151)
213 1ku3_A Sigma factor SIGA; heli 45.0 30 0.001 24.9 4.7 40 372-411 11-53 (73)
214 2bv6_A MGRA, HTH-type transcri 44.9 11 0.00037 31.2 2.4 48 478-531 39-86 (142)
215 2x48_A CAG38821; archeal virus 44.8 55 0.0019 21.8 5.8 24 387-410 30-53 (55)
216 2fbh_A Transcriptional regulat 44.6 17 0.00058 30.0 3.7 47 478-530 39-86 (146)
217 3t72_q RNA polymerase sigma fa 44.6 29 0.00098 27.2 4.7 39 372-410 20-61 (99)
218 1oks_A RNA polymerase alpha su 44.5 29 0.00098 23.5 3.8 44 236-279 5-48 (56)
219 1ku9_A Hypothetical protein MJ 44.5 17 0.00059 30.0 3.7 44 480-529 30-74 (152)
220 4hbl_A Transcriptional regulat 44.1 10 0.00035 31.8 2.1 48 477-530 42-89 (149)
221 3g3z_A NMB1585, transcriptiona 43.8 14 0.00047 30.7 3.0 48 477-530 32-79 (145)
222 2cfx_A HTH-type transcriptiona 43.8 15 0.00052 30.7 3.2 47 477-529 6-52 (144)
223 2f2e_A PA1607; transcription f 43.7 28 0.00096 29.3 4.9 49 373-424 23-71 (146)
224 3ech_A MEXR, multidrug resista 43.1 11 0.00039 31.2 2.3 49 477-531 38-86 (142)
225 1jgs_A Multiple antibiotic res 42.1 20 0.00067 29.3 3.6 46 478-529 36-81 (138)
226 1p4w_A RCSB; solution structur 41.9 28 0.00095 27.2 4.2 40 372-413 35-74 (99)
227 1v4r_A Transcriptional repress 41.6 12 0.00042 29.3 2.1 40 383-424 29-69 (102)
228 1ub9_A Hypothetical protein PH 41.1 12 0.00041 28.7 2.0 47 478-530 18-64 (100)
229 2nnn_A Probable transcriptiona 40.8 15 0.00051 30.1 2.7 43 481-529 43-85 (140)
230 1lj9_A Transcriptional regulat 40.7 19 0.00066 29.6 3.4 47 478-530 31-77 (144)
231 1r7j_A Conserved hypothetical 40.6 33 0.0011 26.5 4.5 44 376-423 10-53 (95)
232 3cjn_A Transcriptional regulat 40.6 18 0.00062 30.6 3.3 47 478-530 54-100 (162)
233 2o8x_A Probable RNA polymerase 40.3 41 0.0014 23.6 4.7 39 372-412 16-55 (70)
234 2p5v_A Transcriptional regulat 40.1 18 0.00061 31.0 3.1 45 478-528 12-56 (162)
235 2fa5_A Transcriptional regulat 40.0 17 0.00057 30.8 2.9 48 477-530 50-97 (162)
236 3bro_A Transcriptional regulat 39.6 17 0.00057 29.9 2.8 47 478-530 36-84 (141)
237 1q1h_A TFE, transcription fact 39.6 26 0.0009 27.6 3.9 44 480-529 22-66 (110)
238 1mzb_A Ferric uptake regulatio 39.4 33 0.0011 28.4 4.6 65 370-439 14-85 (136)
239 3bpv_A Transcriptional regulat 39.3 15 0.00051 30.0 2.4 47 478-530 31-77 (138)
240 2cg4_A Regulatory protein ASNC 39.3 19 0.00065 30.4 3.1 46 477-528 9-54 (152)
241 3s2w_A Transcriptional regulat 39.2 12 0.0004 31.8 1.8 47 478-530 52-98 (159)
242 3bdd_A Regulatory protein MARR 39.1 17 0.00058 29.8 2.7 48 477-530 32-79 (142)
243 4a5n_A Uncharacterized HTH-typ 38.8 42 0.0014 27.7 5.1 53 480-538 30-84 (131)
244 2ia0_A Putative HTH-type trans 38.7 19 0.00066 31.2 3.1 46 477-528 18-63 (171)
245 1z7u_A Hypothetical protein EF 38.7 35 0.0012 27.1 4.5 53 480-538 26-80 (112)
246 3dp7_A SAM-dependent methyltra 38.6 30 0.001 34.0 4.9 51 379-439 40-91 (363)
247 2nyx_A Probable transcriptiona 38.6 17 0.00057 31.2 2.7 46 478-529 47-92 (168)
248 1mzb_A Ferric uptake regulatio 38.6 60 0.002 26.8 6.1 52 479-531 21-74 (136)
249 3eyy_A Putative iron uptake re 38.5 22 0.00074 30.0 3.3 49 482-531 25-73 (145)
250 3jw4_A Transcriptional regulat 38.5 17 0.0006 30.2 2.8 47 478-530 43-91 (148)
251 3mwm_A ZUR, putative metal upt 38.5 70 0.0024 26.5 6.5 53 478-531 16-69 (139)
252 3nrv_A Putative transcriptiona 38.4 19 0.00065 29.9 3.0 47 478-530 42-88 (148)
253 3i53_A O-methyltransferase; CO 38.4 44 0.0015 32.2 6.0 42 379-423 30-71 (332)
254 3hug_A RNA polymerase sigma fa 38.4 42 0.0014 25.4 4.8 39 372-412 38-77 (92)
255 3k2z_A LEXA repressor; winged 38.3 24 0.00081 31.4 3.7 56 473-534 6-62 (196)
256 1u2w_A CADC repressor, cadmium 38.2 21 0.00072 29.0 3.1 54 478-537 44-97 (122)
257 1b4a_A Arginine repressor; hel 38.1 54 0.0018 27.8 5.7 58 477-539 6-63 (149)
258 2w25_A Probable transcriptiona 38.1 21 0.0007 30.1 3.1 47 477-529 8-54 (150)
259 1x19_A CRTF-related protein; m 37.8 40 0.0014 32.9 5.7 50 379-439 56-105 (359)
260 3k2z_A LEXA repressor; winged 37.8 21 0.00073 31.7 3.3 51 372-424 3-58 (196)
261 2e1c_A Putative HTH-type trans 37.7 21 0.00072 31.1 3.2 47 477-529 28-74 (171)
262 2f2e_A PA1607; transcription f 37.4 26 0.00089 29.5 3.7 51 480-538 28-80 (146)
263 2hr3_A Probable transcriptiona 37.3 26 0.0009 28.9 3.7 47 478-530 37-84 (147)
264 2rdp_A Putative transcriptiona 37.3 22 0.00076 29.5 3.3 44 480-529 46-89 (150)
265 1bia_A BIRA bifunctional prote 37.1 34 0.0012 33.1 4.9 41 374-414 5-45 (321)
266 2kko_A Possible transcriptiona 36.9 16 0.00055 28.9 2.1 53 477-536 26-78 (108)
267 1z91_A Organic hydroperoxide r 36.9 20 0.00069 29.6 2.9 44 481-530 45-88 (147)
268 2ip2_A Probable phenazine-spec 36.9 41 0.0014 32.3 5.5 43 387-438 40-82 (334)
269 2cyy_A Putative HTH-type trans 36.7 22 0.00077 29.9 3.2 46 478-529 9-54 (151)
270 3deu_A Transcriptional regulat 36.0 20 0.00068 30.7 2.8 47 478-530 55-102 (166)
271 3e6m_A MARR family transcripti 35.7 16 0.00056 31.0 2.1 47 478-530 55-101 (161)
272 1nkl_A NK-lysin; saposin fold, 35.7 96 0.0033 22.7 6.2 58 186-246 7-65 (78)
273 2o03_A Probable zinc uptake re 35.6 34 0.0012 28.1 4.1 51 372-424 9-65 (131)
274 3bwg_A Uncharacterized HTH-typ 35.5 46 0.0016 30.5 5.4 54 477-537 14-69 (239)
275 1j5y_A Transcriptional regulat 35.5 34 0.0012 30.0 4.3 43 375-419 22-65 (187)
276 1xmk_A Double-stranded RNA-spe 35.4 26 0.00089 26.2 2.9 52 476-533 11-63 (79)
277 3boq_A Transcriptional regulat 35.3 18 0.00062 30.5 2.4 48 477-530 48-96 (160)
278 2r3s_A Uncharacterized protein 35.2 32 0.0011 33.0 4.5 50 379-439 31-80 (335)
279 2xig_A Ferric uptake regulatio 35.0 41 0.0014 28.4 4.6 52 370-423 23-80 (150)
280 1tw3_A COMT, carminomycin 4-O- 34.7 36 0.0012 33.2 4.8 51 379-439 44-94 (360)
281 1v4r_A Transcriptional repress 34.7 20 0.00069 27.9 2.4 50 476-531 19-70 (102)
282 2pg4_A Uncharacterized protein 34.6 13 0.00044 28.6 1.1 46 484-535 23-70 (95)
283 3bj6_A Transcriptional regulat 34.6 21 0.00072 29.7 2.7 47 478-530 42-88 (152)
284 3hrs_A Metalloregulator SCAR; 34.5 27 0.00094 31.5 3.6 45 378-424 10-54 (214)
285 3cuq_B Vacuolar protein-sortin 34.4 29 0.00098 31.6 3.6 50 483-538 161-210 (218)
286 3df8_A Possible HXLR family tr 34.3 59 0.002 25.7 5.2 49 480-536 31-82 (111)
287 2p5k_A Arginine repressor; DNA 34.1 61 0.0021 22.3 4.7 53 481-538 10-62 (64)
288 1z6r_A MLC protein; transcript 33.9 56 0.0019 32.5 6.1 65 376-442 18-85 (406)
289 3eco_A MEPR; mutlidrug efflux 33.7 18 0.00063 29.6 2.1 47 478-530 33-81 (139)
290 3to7_A Histone acetyltransfera 33.5 34 0.0012 32.0 3.9 43 375-422 194-237 (276)
291 3by6_A Predicted transcription 33.4 34 0.0012 28.0 3.6 54 477-537 20-75 (126)
292 2jsc_A Transcriptional regulat 33.4 32 0.0011 27.7 3.4 51 479-536 24-74 (118)
293 2w57_A Ferric uptake regulatio 33.3 37 0.0013 28.7 4.0 52 370-423 13-71 (150)
294 3pqk_A Biofilm growth-associat 33.0 40 0.0014 26.0 3.9 52 479-537 26-77 (102)
295 1qzz_A RDMB, aclacinomycin-10- 32.8 42 0.0014 32.8 4.9 43 378-423 40-82 (374)
296 2pex_A Transcriptional regulat 32.8 20 0.00068 30.0 2.2 46 479-530 50-95 (153)
297 2fe3_A Peroxide operon regulat 32.7 58 0.002 27.2 5.1 59 479-538 25-84 (145)
298 2h09_A Transcriptional regulat 32.6 28 0.00096 29.3 3.1 40 382-423 48-87 (155)
299 2b0l_A GTP-sensing transcripti 32.4 21 0.00071 28.1 2.1 44 379-424 33-77 (102)
300 1r7j_A Conserved hypothetical 32.2 93 0.0032 23.9 5.8 47 477-531 9-55 (95)
301 4ets_A Ferric uptake regulatio 32.1 63 0.0021 27.7 5.3 53 478-530 35-89 (162)
302 1r1u_A CZRA, repressor protein 32.0 25 0.00087 27.5 2.6 53 477-536 27-79 (106)
303 2fbi_A Probable transcriptiona 32.0 16 0.00053 30.0 1.3 48 477-530 37-84 (142)
304 2ou2_A Histone acetyltransfera 31.9 41 0.0014 31.6 4.3 25 388-412 212-236 (280)
305 3mcz_A O-methyltransferase; ad 31.9 44 0.0015 32.4 4.8 34 388-423 56-89 (352)
306 1xma_A Predicted transcription 31.6 54 0.0019 27.5 4.7 54 475-529 40-95 (145)
307 1yyv_A Putative transcriptiona 31.2 44 0.0015 27.5 4.0 45 480-530 39-83 (131)
308 1jko_C HIN recombinase, DNA-in 30.9 63 0.0021 20.7 4.2 32 379-412 14-45 (52)
309 2l0k_A Stage III sporulation p 30.9 39 0.0013 26.1 3.4 34 377-411 10-43 (93)
310 3edp_A LIN2111 protein; APC883 30.8 62 0.0021 29.6 5.4 47 484-537 26-73 (236)
311 2xig_A Ferric uptake regulatio 30.6 62 0.0021 27.3 5.0 59 479-538 30-89 (150)
312 2heo_A Z-DNA binding protein 1 30.6 19 0.00066 25.8 1.4 44 480-529 14-58 (67)
313 2x4h_A Hypothetical protein SS 30.2 58 0.002 26.5 4.7 45 480-530 21-65 (139)
314 2ozu_A Histone acetyltransfera 30.1 36 0.0012 32.0 3.5 27 386-412 212-238 (284)
315 3fm5_A Transcriptional regulat 29.8 30 0.001 28.7 2.8 47 478-530 41-88 (150)
316 2a61_A Transcriptional regulat 29.6 19 0.00063 29.7 1.4 47 478-530 35-81 (145)
317 3f2g_A Alkylmercury lyase; MER 29.3 66 0.0022 29.2 5.1 37 376-412 24-60 (220)
318 2d1h_A ST1889, 109AA long hypo 29.3 22 0.00075 27.5 1.7 43 483-531 29-71 (109)
319 1l9l_A Granulysin; saposin fol 29.3 1E+02 0.0035 22.5 5.3 57 186-246 7-65 (74)
320 3mzy_A RNA polymerase sigma-H 29.2 51 0.0017 27.4 4.3 38 372-411 110-147 (164)
321 3rkx_A Biotin-[acetyl-COA-carb 28.7 1E+02 0.0035 29.7 6.8 58 375-440 4-63 (323)
322 2o03_A Probable zinc uptake re 28.7 1.2E+02 0.004 24.7 6.3 51 487-538 23-73 (131)
323 1xsv_A Hypothetical UPF0122 pr 28.6 72 0.0025 25.4 4.8 40 372-412 26-65 (113)
324 2ek5_A Predicted transcription 28.5 93 0.0032 25.4 5.6 48 483-537 20-68 (129)
325 3lst_A CALO1 methyltransferase 28.3 46 0.0016 32.3 4.3 43 387-439 54-96 (348)
326 2w57_A Ferric uptake regulatio 28.0 60 0.002 27.4 4.4 53 478-531 19-73 (150)
327 2wv0_A YVOA, HTH-type transcri 27.9 68 0.0023 29.5 5.1 54 477-537 19-74 (243)
328 3ke2_A Uncharacterized protein 27.7 1.2E+02 0.0041 24.3 5.6 32 387-420 32-63 (117)
329 2fxa_A Protease production reg 27.6 28 0.00096 31.2 2.3 44 481-530 53-96 (207)
330 1stz_A Heat-inducible transcri 27.5 49 0.0017 32.3 4.2 54 372-427 15-75 (338)
331 3c18_A Nucleotidyltransferase- 26.9 71 0.0024 30.3 5.0 65 469-537 215-283 (290)
332 3tqn_A Transcriptional regulat 26.8 71 0.0024 25.3 4.4 38 385-424 29-67 (113)
333 1s7o_A Hypothetical UPF0122 pr 26.4 68 0.0023 25.6 4.2 39 372-412 23-62 (113)
334 1y0u_A Arsenical resistance op 26.4 47 0.0016 25.3 3.2 45 478-530 33-77 (96)
335 1on2_A Transcriptional regulat 26.0 46 0.0016 27.3 3.3 46 480-531 12-57 (142)
336 2o0m_A Transcriptional regulat 26.0 14 0.00049 36.2 0.0 52 370-423 16-67 (345)
337 2ek5_A Predicted transcription 26.0 89 0.003 25.5 5.0 38 385-424 24-62 (129)
338 2oxl_A Hypothetical protein YM 26.0 79 0.0027 22.6 3.9 50 474-523 7-59 (64)
339 3eyy_A Putative iron uptake re 26.0 47 0.0016 27.8 3.3 52 370-423 15-71 (145)
340 2xvc_A ESCRT-III, SSO0910; cel 25.5 61 0.0021 22.5 3.1 41 379-421 15-56 (59)
341 3f6o_A Probable transcriptiona 25.4 44 0.0015 26.7 2.9 54 477-537 19-72 (118)
342 3eet_A Putative GNTR-family tr 25.2 87 0.003 29.3 5.4 48 483-537 45-93 (272)
343 1sfu_A 34L protein; protein/Z- 25.1 1.1E+02 0.0036 22.7 4.6 47 481-533 20-66 (75)
344 3iz6_V 40S ribosomal protein S 25.0 42 0.0014 26.7 2.6 45 489-539 59-103 (108)
345 2w48_A Sorbitol operon regulat 24.8 50 0.0017 31.7 3.7 44 378-423 11-55 (315)
346 1ufm_A COP9 complex subunit 4; 24.7 96 0.0033 23.3 4.5 40 375-414 17-56 (84)
347 2co5_A Viral protein F93; vira 24.7 94 0.0032 24.2 4.6 43 488-530 22-64 (99)
348 2q2k_A Hypothetical protein; p 24.6 47 0.0016 22.5 2.4 34 96-129 32-68 (70)
349 1hsj_A Fusion protein consisti 24.5 72 0.0025 32.4 5.1 54 480-539 408-466 (487)
350 3nqo_A MARR-family transcripti 24.5 35 0.0012 29.9 2.3 47 478-530 43-91 (189)
351 4ham_A LMO2241 protein; struct 24.4 77 0.0026 25.9 4.4 53 478-537 25-78 (134)
352 3by6_A Predicted transcription 24.3 78 0.0027 25.7 4.3 38 385-424 31-69 (126)
353 3clo_A Transcriptional regulat 24.3 62 0.0021 29.9 4.2 40 371-412 197-236 (258)
354 1s3j_A YUSO protein; structura 24.2 23 0.00079 29.5 1.0 47 478-530 39-85 (155)
355 3neu_A LIN1836 protein; struct 24.0 1E+02 0.0035 24.9 5.0 37 386-424 34-71 (125)
356 3szt_A QCSR, quorum-sensing co 23.9 59 0.002 29.7 3.8 42 371-414 175-216 (237)
357 2pq8_A Probable histone acetyl 23.8 43 0.0015 31.5 2.8 38 375-412 194-232 (278)
358 3u5c_Z RP45, S31, YS23, 40S ri 23.7 1.1E+02 0.0038 24.3 4.7 48 486-539 55-102 (108)
359 3tqn_A Transcriptional regulat 23.6 86 0.0029 24.8 4.4 46 484-536 26-72 (113)
360 1yg2_A Gene activator APHA; vi 23.2 79 0.0027 27.4 4.4 54 476-530 2-57 (179)
361 3l7w_A Putative uncharacterize 22.6 68 0.0023 25.2 3.5 54 474-530 7-60 (108)
362 1uly_A Hypothetical protein PH 22.4 68 0.0023 28.3 3.8 47 476-529 20-66 (192)
363 3gwz_A MMCR; methyltransferase 22.2 51 0.0017 32.4 3.2 35 387-423 70-104 (369)
364 3f6v_A Possible transcriptiona 21.8 63 0.0022 27.3 3.3 54 477-537 59-112 (151)
365 1uxc_A FRUR (1-57), fructose r 21.8 69 0.0024 22.7 3.0 22 389-410 1-22 (65)
366 3iuo_A ATP-dependent DNA helic 21.6 1.3E+02 0.0045 24.2 5.2 38 375-414 21-58 (122)
367 3f3x_A Transcriptional regulat 21.5 30 0.001 28.5 1.2 46 478-530 39-84 (144)
368 2dk8_A DNA-directed RNA polyme 21.4 61 0.0021 24.4 2.7 56 477-538 15-71 (81)
369 4ham_A LMO2241 protein; struct 21.3 48 0.0016 27.3 2.4 40 383-424 32-72 (134)
370 3neu_A LIN1836 protein; struct 21.3 1.2E+02 0.004 24.5 4.8 48 483-537 29-77 (125)
371 3htu_A Vacuolar protein-sortin 21.3 95 0.0032 23.2 3.7 35 387-421 26-69 (79)
372 3c7j_A Transcriptional regulat 21.2 60 0.002 29.7 3.3 41 382-424 43-83 (237)
373 2lfw_A PHYR sigma-like domain; 21.1 69 0.0024 26.9 3.5 38 372-410 94-131 (157)
374 1t6s_A Conserved hypothetical 21.0 87 0.003 26.9 4.0 33 381-413 15-49 (162)
375 2k9l_A RNA polymerase sigma fa 20.9 1.3E+02 0.0043 22.0 4.5 36 377-412 35-72 (76)
376 2esh_A Conserved hypothetical 20.9 1.1E+02 0.0038 24.3 4.6 54 475-530 12-69 (118)
377 1l3l_A Transcriptional activat 20.6 1.1E+02 0.0039 27.5 5.2 41 371-413 173-213 (234)
378 4esf_A PADR-like transcription 20.6 2.4E+02 0.0083 22.3 6.6 57 472-529 7-63 (117)
379 3mwm_A ZUR, putative metal upt 20.5 1E+02 0.0035 25.5 4.3 65 370-439 10-80 (139)
380 4aik_A Transcriptional regulat 20.3 74 0.0025 26.6 3.5 38 487-530 43-80 (151)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=6e-107 Score=901.85 Aligned_cols=539 Identities=63% Similarity=0.995 Sum_probs=518.9
Q ss_pred CccccccchHhhhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHchhcCCCChHHHHHHHHHHHHHHHH
Q 009222 1 MFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHI 80 (540)
Q Consensus 1 m~~~l~~Y~~~fE~~~l~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~~E~~~~~~~l~~~s~~~l~~~~~~~Li~~~~ 80 (540)
||++|++|.+.||++||+.|.+||+.+++.|+++.++++|+.+|+.++++|.+||..||+++|.++|.++|+++||.+|.
T Consensus 220 ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~~~~~Li~~~~ 299 (759)
T 2hye_C 220 MLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHL 299 (759)
T ss_dssp HHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHHTTTCS
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhhc-cchHHHHHHHHHHHHHHhhhhhcCchhhHHHHHHHHHHHHHHHHHHHHh
Q 009222 81 SAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQS 159 (540)
Q Consensus 81 ~~ll~~~~~~ll~~~~~~~l~~ly~l~~~~-~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~ 159 (540)
+.++++|+..||.+++.++|++||+|++++ ++++.|+.+|++||++.|..++.+.+++.++|+.|+++|++|+.++..|
T Consensus 300 ~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~~~~~V~~ll~~~~k~~~lv~~~ 379 (759)
T 2hye_C 300 TAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVC 379 (759)
T ss_dssp HHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988999999999999999999999999 9999999999999999999999887777899999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhhhcccChhHHHHHHHHHHHH
Q 009222 160 FSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAK 239 (540)
Q Consensus 160 F~~~~~f~~~l~~~f~~~ln~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~l~~i~~l~~~l~~Kd~F~~~Y~~~L~~ 239 (540)
|++|+.|..++++||+.++|.+.++++|+||+|||.++|+|.++.++++++..+++++.+|+|+++||+|+.+|+++||+
T Consensus 380 F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~Lak 459 (759)
T 2hye_C 380 FQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAK 459 (759)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987789999999999999998888888999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHhhcchhHHhHHHHHhhHHHhHHHHHHHHHhhhhccCCCCCccEEEEEeecCCCCCCCC
Q 009222 240 RLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPP 319 (540)
Q Consensus 240 RLL~~~~~~~~~E~~~i~~L~~~~g~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VL~~~~WP~~~~ 319 (540)
|||.+++.+.+.|..+|++|+.+||.+++++|++|++|+..|++++..|++...+. +.+.+++|+|.|||+++||..+.
T Consensus 460 RLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~-~~~~~~~~~v~VLs~~~WP~~~~ 538 (759)
T 2hye_C 460 RLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQ-SDSGPIDLTVNILTMGYWPTYTP 538 (759)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCEEEEEEEETTTSCCCCC
T ss_pred HhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCceEEEEeCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999876532 23357899999999999999988
Q ss_pred CCCcCChhHHHHHHHHHHHHhhcCCCeeeEeccCCceEEEEEEecCceEEEEEcHHHHHHHHHhcCCCCccHHHHHHHhC
Q 009222 320 MDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATG 399 (540)
Q Consensus 320 ~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~ 399 (540)
.++.+|++|+.+++.|++||.++|+||+|+|.|++|+|+|+++|++|+++++||++||+||++||+.+++|++||++.||
T Consensus 539 ~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~ 618 (759)
T 2hye_C 539 MEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATG 618 (759)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTC
T ss_pred CCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHC
Confidence 89999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCCCCCceeEEecccccccchhhhhhhhHHHHHhhHHhHHH
Q 009222 400 IEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDA 479 (540)
Q Consensus 400 i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~a 479 (540)
++++.++++|.+|+++|.+||.++|+++++.+++.|.+|.+|+++..|++++.++.+++.+|++.+.+.+.+||+..|+|
T Consensus 619 i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~A 698 (759)
T 2hye_C 619 IEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDA 698 (759)
T ss_dssp CCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999998768899999999999999999999999999999999998777777777888888999999999999
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yia 540 (540)
|||||||++|+|+|++|+.+|.++++|+|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 699 aIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 699 AIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=9.6e-105 Score=884.29 Aligned_cols=531 Identities=36% Similarity=0.587 Sum_probs=503.2
Q ss_pred cccchHhhhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHchhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 009222 5 LGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAIL 84 (540)
Q Consensus 5 l~~Y~~~fE~~~l~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~~E~~~~~~~l~~~s~~~l~~~~~~~Li~~~~~~ll 84 (540)
|++|.+.||++||+.|.+||+.+++.|+++.++++||.+|+.++++|.+||+.||+++|.++|.++|+++||.+|.+.|+
T Consensus 209 l~vY~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~ 288 (760)
T 1ldj_A 209 LTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH 288 (760)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHccCChhhHHHHHHHhhhc-cchHHHHHHHHHHHHHHhhhhhcCc-----hhhHHHHHHHHHHHHHHHHHHHH
Q 009222 85 DKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDE-----EKDKDMVSSLLEFKASLDTIWEQ 158 (540)
Q Consensus 85 ~~~~~~ll~~~~~~~l~~ly~l~~~~-~~~~~l~~~~~~~i~~~g~~~~~~~-----~~~~~~i~~l~~l~~~~~~l~~~ 158 (540)
+||..||++++.++|++||+||+++ ++++.|+.+|++||.+.|..++.+. ..+..||+.|+++|++|+.++..
T Consensus 289 -~~~~~ll~~~~~~dL~~my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~ 367 (760)
T 1ldj_A 289 -TEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMS 367 (760)
T ss_dssp -HHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHcCCHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999 9999999999999999999988753 45679999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcC--------CCCcHHHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhhhcccChhHHH
Q 009222 159 SFSKNEAFCNTIKDAFEYLINLR--------QNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFE 230 (540)
Q Consensus 159 ~F~~~~~f~~~l~~~f~~~ln~~--------~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~l~~i~~l~~~l~~Kd~F~ 230 (540)
||++|+.|..++++||+.++|.+ ..+++|+||+|||.++|+|.++.++++++..++.++.+|+|+++||+|+
T Consensus 368 ~F~~d~~f~~al~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~ 447 (760)
T 1ldj_A 368 AFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQ 447 (760)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999976 2588999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcchhHHhHHHHHhhHHHhHHHHHHHHHhhhhccCCCCCccEEEEEee
Q 009222 231 AFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLT 310 (540)
Q Consensus 231 ~~Y~~~L~~RLL~~~~~~~~~E~~~i~~L~~~~g~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VL~ 310 (540)
.+|+++||+|||.+++.+.+.|..+|++|+.+||.+++++|++|++|+..|++++..|++...+ +...+++|+|.|||
T Consensus 448 ~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~--~~~~~~~~~v~VLs 525 (760)
T 1ldj_A 448 KFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN--SEPLDLDFSIQVLS 525 (760)
T ss_dssp HHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCCSSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCeeEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999988653 12357899999999
Q ss_pred cCCCCCCCCCCCcCChhHHHHHHHHHHHHhhcCCCeeeEeccCCceEEEEEEecCceEEEEEcHHHHHHHHHhcCCCCcc
Q 009222 311 TGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLS 390 (540)
Q Consensus 311 ~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLl~Fn~~~~~t 390 (540)
+++||..+..++.+|++|+.+++.|++||.++|+||+|+|.|++|+|+|+++|+++++++.||++||+||++||+.+++|
T Consensus 526 ~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t 605 (760)
T 1ldj_A 526 SGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYT 605 (760)
T ss_dssp TTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEE
T ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcC
Confidence 99999998789999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC-----CCCCCCCCCeEEEccCCCCCceeEEecccccccchhhhhhh
Q 009222 391 FQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP-----KGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTST 465 (540)
Q Consensus 391 ~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~-----~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~~~~~e~~~~ 465 (540)
+++|++.||++++.++++|.+|+ +.+||.+.| +++++.+++.|++|.+|+++..|++++.+..+++..|.+.+
T Consensus 606 ~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~ 683 (760)
T 1ldj_A 606 VQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETT 683 (760)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchhhhhH
Confidence 99999999999999999999996 578998554 67889999999999999999999999865444556666778
Q ss_pred hHHHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q 009222 466 TERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540 (540)
Q Consensus 466 ~~~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yia 540 (540)
.+.+.+||+..|+||||||||++|+|+|++|+.+|.+++ +|.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 684 ~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 684 HKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 889999999999999999999999999999999999999 799999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=4e-78 Score=618.70 Aligned_cols=358 Identities=33% Similarity=0.511 Sum_probs=325.2
Q ss_pred CCCcHHHHHHHHHHHHhcC--CCCCChHHHHHHHHhhhhhhhcccChhHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 009222 182 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKL 259 (540)
Q Consensus 182 ~~~~~e~La~y~d~~l~~~--~~~~~~~~~~~~l~~i~~l~~~l~~Kd~F~~~Y~~~L~~RLL~~~~~~~~~E~~~i~~L 259 (540)
.++.||+||+|||.+||+| .++.++++++..|+.++.+|+|+++||+|+.+|+++||+|||.+++.+.+.|+.+|++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 3578999999999999987 36778899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc--hhHHhHHHHHhhHHHhHHHHHHHHHhhhhccCCCCCccEEEEEeecCCCCCCC-CCCCcCChhHHHHHHHHH
Q 009222 260 KTECGS--QFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYP-PMDVRLPHELNVYQDIFK 336 (540)
Q Consensus 260 ~~~~g~--~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VL~~~~WP~~~-~~~~~lP~~l~~~~~~f~ 336 (540)
+ +||. +|+++|++|++|+..|++++..|++...+......+++|++.||++++||..+ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9996 99999999999999999999999987653221123689999999999999985 468999999999999999
Q ss_pred HHHhhcCCCeeeEeccCCceEEEEEEecCceEEEEEcHHHHHHHHHhcCC--CCccHHHHHHHhCCCHHHHHHHhhhhhc
Q 009222 337 EFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLAC 414 (540)
Q Consensus 337 ~~Y~~~~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 414 (540)
+||.++|+||+|+|.|++|+|+|++++++|++++.||++||+||++||+. +.+|++||++.||++++.++++|.+|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999998999999999999999999986 8999999999999999999999999986
Q ss_pred -C--CceeeecCCCC---CCCCCCCeEEEccCCCCC-----ceeEEeccccc--ccchhhhhhhhHHHHHhhHHhHHHHH
Q 009222 415 -G--KVRVLQKLPKG---RDVEDDDSFVFNEGFTAP-----LYRIKVNAIQM--KETVEENTSTTERVFQDRQYQVDAAI 481 (540)
Q Consensus 415 -~--k~~iL~~~~~~---~~~~~~~~~~~N~~f~~~-----~~~i~i~~~~~--~~~~~e~~~~~~~~~~~r~~~i~a~I 481 (540)
+ |.+||.++|++ +++.++|.|.+|.+|+++ .++++|+.++. .++..+.+++.+.+.++|+..|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEE
Confidence 3 46799988753 568899999999999862 35677765432 12455666778899999999999999
Q ss_pred HhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q 009222 482 VRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540 (540)
Q Consensus 482 VRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yia 540 (540)
|||||++|+|+|++|+.+|.+++ +|.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred ehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 99999999999999999999999 899999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=289.35 Aligned_cols=197 Identities=36% Similarity=0.662 Sum_probs=171.8
Q ss_pred Ccccccc-----chHhhhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHchhcCCCChHHHHHHHHHHH
Q 009222 1 MFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQL 75 (540)
Q Consensus 1 m~~~l~~-----Y~~~fE~~~l~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~~E~~~~~~~l~~~s~~~l~~~~~~~L 75 (540)
||++|+. |.+.||++||+.|.+||+.+++.|+++.++++||.+|+.++++|.+||..||+++|.++|.++|+++|
T Consensus 189 ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~kL~~~~e~~L 268 (410)
T 4ap2_B 189 MLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVEREL 268 (410)
T ss_dssp HHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 5666664 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---HHHHHHHccCChhhHHHHHHHhhhc-cchHHHHHHHHHHHHHHhhhhhcCch---hhHHHHHHHHHH
Q 009222 76 LERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEE---KDKDMVSSLLEF 148 (540)
Q Consensus 76 i~~~~~~ll~---~~~~~ll~~~~~~~l~~ly~l~~~~-~~~~~l~~~~~~~i~~~g~~~~~~~~---~~~~~i~~l~~l 148 (540)
|.+|.+.|++ +||..||++++.++|++||+||+++ ++++.|+.+|++||++.|.+++.+.. .+..||+.|+++
T Consensus 269 I~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~~~~~~~~V~~LL~l 348 (410)
T 4ap2_B 269 ISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDL 348 (410)
T ss_dssp TGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHH
Confidence 9999999986 7999999999999999999999999 89999999999999999999998764 456999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHh
Q 009222 149 KASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLR 198 (540)
Q Consensus 149 ~~~~~~l~~~~F~~~~~f~~~l~~~f~~~ln~~~~~~~e~La~y~d~~l~ 198 (540)
|++|+.++..||++|+.|..++++||+.|+|.++ +.||+||+|||..-.
T Consensus 349 ~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~-~spElla~y~D~~~~ 397 (410)
T 4ap2_B 349 KSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS-RSPEYLAENLYFQSH 397 (410)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC-CCHHHHHHHccCccc
Confidence 9999999999999999999999999999999986 677999999998654
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=99.97 E-value=7.7e-32 Score=274.63 Aligned_cols=182 Identities=49% Similarity=0.770 Sum_probs=173.1
Q ss_pred CccccccchHhhhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHchhcCCCChHHHHHHHHHHHHHHHH
Q 009222 1 MFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHI 80 (540)
Q Consensus 1 m~~~l~~Y~~~fE~~~l~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~~E~~~~~~~l~~~s~~~l~~~~~~~Li~~~~ 80 (540)
||++|++|.+.||++||+.|.+||+.+++.|+++.++++||.+|+.++++|.+||..||+++|.+++.++|+++||.+|.
T Consensus 171 ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~ 250 (354)
T 4a64_A 171 MLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHL 250 (354)
T ss_dssp HHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCChhhHHHHHHHhhhc-cchHHHHHHHHHHHHHHhhhhhcCchhhHHHHHHHHHHHHHHHHHHHHh
Q 009222 81 SAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQS 159 (540)
Q Consensus 81 ~~ll~~~~~~ll~~~~~~~l~~ly~l~~~~-~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~ 159 (540)
+.|+.+|+..||++++.++|++||+||+++ ++++.|+.+|++||++.|.+++.+..++..||+.|+++|++|+.++..|
T Consensus 251 ~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~V~~LL~l~~k~~~iv~~~ 330 (354)
T 4a64_A 251 TAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQELDDFKDKVDHIIDIC 330 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999888999999999999999999999999 8999999999999999999999888778899999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCC
Q 009222 160 FSKNEAFCNTIKDAFEYLINLRQ 182 (540)
Q Consensus 160 F~~~~~f~~~l~~~f~~~ln~~~ 182 (540)
|++|+.|..++++||+.|+|.++
T Consensus 331 F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 331 FLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp STTCHHHHHHHHHHHHTC-----
T ss_pred cCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999864
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=99.96 E-value=2.1e-30 Score=265.10 Aligned_cols=181 Identities=37% Similarity=0.703 Sum_probs=123.6
Q ss_pred Ccccccc-----chHhhhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHchhcCCCChHHHHHHHHHHH
Q 009222 1 MFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQL 75 (540)
Q Consensus 1 m~~~l~~-----Y~~~fE~~~l~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~~E~~~~~~~l~~~s~~~l~~~~~~~L 75 (540)
||++|+. |.+.||++||+.|.+||+.+++.|+++.++++||.+|+.++++|.+||..||+++|.++|.++|+++|
T Consensus 172 ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~L 251 (364)
T 4eoz_B 172 MLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVEREL 251 (364)
T ss_dssp HHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 5666664 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---HHHHHHHccCChhhHHHHHHHhhhc-cchHHHHHHHHHHHHHHhhhhhcCch---hhHHHHHHHHHH
Q 009222 76 LERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEE---KDKDMVSSLLEF 148 (540)
Q Consensus 76 i~~~~~~ll~---~~~~~ll~~~~~~~l~~ly~l~~~~-~~~~~l~~~~~~~i~~~g~~~~~~~~---~~~~~i~~l~~l 148 (540)
|.+|.+.|++ +|+..||++++.++|++||+||+++ ++++.|+.+|++||++.|.+++.+.. .+..||+.|+++
T Consensus 252 I~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~~~V~~LL~l 331 (364)
T 4eoz_B 252 ISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDL 331 (364)
T ss_dssp TTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccccCChHHHHHHHHHH
Confidence 9999999986 7999999999999999999999999 89999999999999999999998764 355899999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Q 009222 149 KASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 181 (540)
Q Consensus 149 ~~~~~~l~~~~F~~~~~f~~~l~~~f~~~ln~~ 181 (540)
|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 332 ~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 332 KSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999964
No 7
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=99.96 E-value=3.8e-29 Score=258.01 Aligned_cols=178 Identities=25% Similarity=0.446 Sum_probs=168.9
Q ss_pred ccccchHhhhHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHchhcC----CCChHHHHHHHHHHHHHHH
Q 009222 4 ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD----VSTRKPLIATAERQLLERH 79 (540)
Q Consensus 4 ~l~~Y~~~fE~~~l~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~~E~~~~~~~l~----~~s~~~l~~~~~~~Li~~~ 79 (540)
.+++|.+.||++||+.|.+||+.+++.|+++.++++||++|+.++++|.+||+.||+ ++|.++|.++|+++||.+|
T Consensus 194 ~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h 273 (391)
T 2wzk_A 194 KLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSF 273 (391)
T ss_dssp TTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGG
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHHHHHHHccCChhhHHHHHHHhhhc-cchHHHHHHHHHHHHHHhhhhhcC-----chhhHHHHHHHHHHHHHHH
Q 009222 80 ISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD-----EEKDKDMVSSLLEFKASLD 153 (540)
Q Consensus 80 ~~~ll~~~~~~ll~~~~~~~l~~ly~l~~~~-~~~~~l~~~~~~~i~~~g~~~~~~-----~~~~~~~i~~l~~l~~~~~ 153 (540)
.+.|++ |+..||++++.++|++||+||+++ +|++.|+.+|++||++.|.+++.+ ..++..||+.|+++|++|+
T Consensus 274 ~~~ll~-~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~~~~~~~~~~~~~V~~LL~l~~k~~ 352 (391)
T 2wzk_A 274 KETILA-ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDSEKYREQLDTLFNRFS 352 (391)
T ss_dssp HHHHHT-THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHH
Confidence 999986 899999999999999999999999 999999999999999999998653 2346689999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcCC
Q 009222 154 TIWEQSFSKNEAFCNTIKDAFEYLINLRQ 182 (540)
Q Consensus 154 ~l~~~~F~~~~~f~~~l~~~f~~~ln~~~ 182 (540)
.++..||++|+.|..++++||+.|+|.++
T Consensus 353 ~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 353 KLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCch
Confidence 99999999999999999999999999864
No 8
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=1.4e-26 Score=186.61 Aligned_cols=93 Identities=75% Similarity=1.124 Sum_probs=86.3
Q ss_pred EEecccccccchhhhhhhhHHHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccc
Q 009222 448 IKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLE 527 (540)
Q Consensus 448 i~i~~~~~~~~~~e~~~~~~~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~ 527 (540)
++|+.++.+++..|.+.+.+.+.+||...||||||||||++|+|+|++|+.+|.+++.|.|++.+||++||.||+||||+
T Consensus 3 ~ki~~i~~ke~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYle 82 (101)
T 2do7_A 3 SGSSGIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYME 82 (101)
T ss_dssp CSSCSCCCCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEE
T ss_pred eeecccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHh
Confidence 45666666666777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCceeecC
Q 009222 528 RDKNNPQIYNYLA 540 (540)
Q Consensus 528 r~~~~~~~y~Yia 540 (540)
|+++|+++|+|+|
T Consensus 83 R~~~d~~~y~YlA 95 (101)
T 2do7_A 83 RDKENPNQYNYIA 95 (101)
T ss_dssp ECSSCTTEEEECC
T ss_pred cCCCCCCeEEEec
Confidence 9999999999998
No 9
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.91 E-value=2.6e-25 Score=174.75 Aligned_cols=80 Identities=38% Similarity=0.611 Sum_probs=76.8
Q ss_pred hhhhhhhHHHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 460 EENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 460 ~e~~~~~~~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
.|++.+.+.+.++|...||||||||||++|+|+|++|+.+|.+++ +|+|++.+||++||+||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 466778889999999999999999999999999999999999999 8999999999999999999999999988 9999
Q ss_pred ecC
Q 009222 538 YLA 540 (540)
Q Consensus 538 Yia 540 (540)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 10
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.91 E-value=2.1e-25 Score=171.12 Aligned_cols=73 Identities=47% Similarity=0.718 Sum_probs=71.1
Q ss_pred HHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q 009222 468 RVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540 (540)
Q Consensus 468 ~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yia 540 (540)
.+++||...|+||||||||++|+|+|++|+.+|.+++ +|+|++.+||++||+||+||||+|+++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 4688999999999999999999999999999999999 899999999999999999999999999999999998
No 11
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.91 E-value=1.1e-25 Score=178.97 Aligned_cols=84 Identities=46% Similarity=0.754 Sum_probs=78.1
Q ss_pred cchhhhhhhhHHHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhccccccCCCCC
Q 009222 457 ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQ 534 (540)
Q Consensus 457 ~~~~e~~~~~~~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~ 534 (540)
++..|.+.+.+.+.+||...||||||||||++|+|+|++|+.+|.+++ +|.|++.+||++||+||+||||+|+++|++
T Consensus 7 e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~ 86 (92)
T 1iuy_A 7 ESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRK 86 (92)
T ss_dssp CCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCC
Confidence 445566677788999999999999999999999999999999999999 799999999999999999999999999999
Q ss_pred ceeecC
Q 009222 535 IYNYLA 540 (540)
Q Consensus 535 ~y~Yia 540 (540)
+|+|+|
T Consensus 87 ~y~Y~A 92 (92)
T 1iuy_A 87 VYTYVA 92 (92)
T ss_dssp EEEEC-
T ss_pred eeEecC
Confidence 999998
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.06 E-value=0.1 Score=38.37 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=48.5
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yia 540 (540)
..|...|.+|.+..++|-. .|..+.+++-.+|+.|.+.|-|.=-=+|.+.|+||.
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAF------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHHH------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHHH------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 3477889999999999886 788999999999999999999988777889999984
No 13
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=91.82 E-value=0.11 Score=39.26 Aligned_cols=49 Identities=29% Similarity=0.472 Sum_probs=40.1
Q ss_pred HHHHHHhcCC------CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCC
Q 009222 377 TVVLMLFNDA------QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGR 427 (540)
Q Consensus 377 ~~iLl~Fn~~------~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~ 427 (540)
-.||....+. .+.|+.||++.+|++...+.+.|..|. +.|+|.+.+.++
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr 61 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGK 61 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSS
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCC
Confidence 3466666555 789999999999999999999999996 578998877544
No 14
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.28 E-value=0.19 Score=38.10 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCC---CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 376 QTVVLMLFNDAQ---KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 376 Q~~iLl~Fn~~~---~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
+..||..+.+.. .+|..||++.+|++...+.++|..|. +.+++...+. ....|.++.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g~-----~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEECS-----SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCceEecC
Confidence 356766666555 89999999999999999999999995 4678876542 125666654
No 15
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=91.00 E-value=0.082 Score=56.54 Aligned_cols=136 Identities=11% Similarity=0.113 Sum_probs=49.8
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcC---CceeeecCCCCCCCCCCCeEEEccCCCCCceeEE
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACG---KVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIK 449 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~---k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~ 449 (540)
+..+..||..+.+...+|..++++.+|++...+++.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 4567788888788889999999999999999999999999741 15788753 36788877632111000
Q ss_pred ecccccccchhhhhhhhHHHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 450 VNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 450 i~~~~~~~~~~e~~~~~~~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
. +. ...-...... -....+..|+..++.++.++-.|+.+.+ ..+.......|..|+++|-|++.
T Consensus 500 ----~--~~-~~~~~~~~~~---~~~~~~~~I~~~l~~~g~it~~di~~l~------~ls~~qa~~~L~~Lv~~G~l~~~ 563 (583)
T 3lmm_A 500 ----E--PS-PFSPVRYLST---DQAELTNAAMLWLSEVGDLATSDLMAMC------GVSRGTAKACVDGLVDEERVVAV 563 (583)
T ss_dssp ----C---------------------------------------------------------------------------
T ss_pred ----c--cc-cccccccccC---ChhHHHHHHHHHHHHcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCcEEEe
Confidence 0 00 0000000000 0234567789999999999999977522 36677789999999999999997
Q ss_pred CCCC
Q 009222 530 KNNP 533 (540)
Q Consensus 530 ~~~~ 533 (540)
+.++
T Consensus 564 G~gr 567 (583)
T 3lmm_A 564 GGGR 567 (583)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 16
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=90.49 E-value=0.46 Score=37.29 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=43.0
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+..+..||..+.+.+++|..||++.+|++...+.++|..|. +.|++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 56788899888887799999999999999999999999996 46888754
No 17
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=89.85 E-value=0.69 Score=35.07 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=43.7
Q ss_pred HHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 377 TVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 377 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
..||..+.+.+++|..||++.+|++...+.+.|..|.. .|++...+.+. ..+..|.++.+
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~--~GlI~~~~~~~--gr~~~y~l~~~ 62 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEK--AGMVQRSPLRR--GMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEEECCSS--SSSCEEEESSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEeccCC--CCcEEEEEChh
Confidence 34666666667899999999999999999999999964 68887433211 12345666654
No 18
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.46 E-value=0.26 Score=37.34 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.|+...++++.+|++||++.+++++..+++-|..|.. .+.|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~--~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES--MGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 4677788899999999999999999999999999964 6777776
No 19
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.32 E-value=0.41 Score=36.57 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCC---CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 376 QTVVLMLFNDAQ---KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 376 Q~~iLl~Fn~~~---~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
+..||..+.+.. .+|..+|++.+|++...++++|..|. +.+++...+. ....|.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeCc
Confidence 556777666666 89999999999999999999999996 4678876541 1256766554
No 20
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=89.32 E-value=0.84 Score=35.86 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++....||..+.+ ++.|+.||++.+|++...+.++|..|.. .|++....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~ 70 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRK 70 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEE
Confidence 4566778888877 8899999999999999999999999964 78887654
No 21
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=88.77 E-value=0.32 Score=37.70 Aligned_cols=44 Identities=5% Similarity=0.089 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.|+...++.+.+|++||++.+++++..+++-|..|. +.|+|.+.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 467778888999999999999999999999999996 46777765
No 22
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=88.35 E-value=0.46 Score=40.23 Aligned_cols=51 Identities=20% Similarity=0.344 Sum_probs=44.9
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
.+|+.|..||..+...+ +|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 35 ~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp CCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 47899999999999888 9999999999999999999999996 478887654
No 23
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=87.90 E-value=0.41 Score=40.54 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=45.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+...+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 578899999999888889999999999999999999999996 468888754
No 24
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=87.86 E-value=0.35 Score=40.88 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=46.0
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|+.|..||..+.+.+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 678899999999988999999999999999999999999996 468887654
No 25
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=87.82 E-value=0.97 Score=35.42 Aligned_cols=56 Identities=14% Similarity=0.272 Sum_probs=45.1
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
+..+..||..+ .+.+|+.||++.+|++...+.++|..|.. .+++.+.. +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~--~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEA--GFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEC--------CEEEECCC
Confidence 45677788777 46799999999999999999999999964 68887642 27777765
No 26
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.78 E-value=0.39 Score=36.38 Aligned_cols=45 Identities=7% Similarity=0.045 Sum_probs=40.8
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 479 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 479 a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
..|...++.++.++.++|.. .|.++...|.+-|+.|.++|+|+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQ------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHH------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35778888999999999887 7899999999999999999999997
No 27
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=87.74 E-value=0.48 Score=37.69 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=44.0
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .|++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~--~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLK--RGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 5788999999887778899999999999999999999999964 6888653
No 28
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=87.70 E-value=0.51 Score=36.02 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=38.9
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
.+...-..||.++.+.+ .|..||++.+|++...++++|..|. +.|++...+
T Consensus 14 ~~~~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~~ 64 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSSD 64 (82)
T ss_dssp CSHHHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEECS
T ss_pred chHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeCC
Confidence 33334445666666555 9999999999999999999999996 467887653
No 29
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=87.61 E-value=0.52 Score=35.74 Aligned_cols=50 Identities=6% Similarity=0.114 Sum_probs=41.8
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHH-HHHHHhhhhhcCCceeeecCC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDK-ELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~-~l~~~L~~L~~~k~~iL~~~~ 424 (540)
...+-.||.++...++.|..+|++.+|++.. .++++|..|- +.+++.+.+
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~~ 60 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQG 60 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEEC
T ss_pred hhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEecC
Confidence 3456778888888889999999999999998 9999999996 467876543
No 30
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=86.95 E-value=0.33 Score=41.07 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=42.1
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+...+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 35 lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 788899999999988899999999999999999999999996 468888754
No 31
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=86.65 E-value=0.52 Score=40.02 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=44.9
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|..||..+...+++|..+|++.+|++...+.+.+..|.. .|++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~~ 88 (148)
T 3nrv_A 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE--KKYIEVNG 88 (148)
T ss_dssp CCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC--
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEeec
Confidence 7888999999998888999999999999999999999999974 68887654
No 32
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=86.39 E-value=0.44 Score=40.70 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=44.9
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 678899999999888999999999999999999999999996 478998754
No 33
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=86.34 E-value=0.77 Score=39.31 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=45.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 91 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRVA 91 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 578899999999888899999999999999999999999996 468887653
No 34
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=86.24 E-value=0.69 Score=38.34 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=44.2
Q ss_pred EEEcHHHHHHHHHhcCCCC--ccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 370 LAVSLFQTVVLMLFNDAQK--LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~~~--~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+-++..|..||..+.+.+. +|..||++.+|++...+.++|..|.. .|++.+.
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~--~GlV~r~ 75 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE--KEILQRS 75 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEee
Confidence 3467889999988876655 99999999999999999999999974 6888754
No 35
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=85.95 E-value=0.38 Score=40.72 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=45.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|..||..+...+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 578899999998887899999999999999999999999996 468887654
No 36
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=85.65 E-value=1.4 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=41.0
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++.+..||..+.+.+++|+.+|++.+|++...+-++|..|. ..|++....
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 45566788777756789999999999999999999999996 478887643
No 37
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.47 E-value=0.67 Score=39.06 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHh-cCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|..||..+ ...+++|..+|++.+|++...+.+.+..|.. .|++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~--~glv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES--QGLVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCeeecC
Confidence 577799999888 7778999999999999999999999999964 68887653
No 38
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=85.41 E-value=0.67 Score=39.60 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++..|..||..+...+++|..+|++.+|++...+.+.+..|. +.|++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 688899999999888889999999999999999999999996 4688876
No 39
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=85.20 E-value=0.48 Score=36.69 Aligned_cols=44 Identities=7% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.|...++.++.++.++|.. .|.++...|.+-|+.|.++|+|.|.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~------~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSA------RLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHH------HTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4677888899999999887 7889999999999999999999997
No 40
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=85.19 E-value=1.1 Score=33.48 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=35.6
Q ss_pred HHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 380 LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 380 Ll~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+..+.+.+..|..+|++.+|++...+.++|-+|- +.|.+...+
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 5567777779999999999999999999999996 456665544
No 41
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=85.15 E-value=0.57 Score=39.29 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=44.2
Q ss_pred EcHHHHHHHHHhcCCC--CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQ--KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|..||..+...+ ++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 6788999998887764 89999999999999999999999996 468887653
No 42
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=85.01 E-value=1 Score=34.17 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=44.7
Q ss_pred EEcHHHHHHHHHhcCC--CCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 371 AVSLFQTVVLMLFNDA--QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
..+.-+..||..+.+. ..+|++||++.+ +++...+.+.|..|.. .|++.+..
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~--~Glv~~~~ 72 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD--AGIVTRHN 72 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCeEEEe
Confidence 4677888999999876 589999999999 9999999999999974 78887653
No 43
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=84.97 E-value=0.45 Score=39.56 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=44.6
Q ss_pred EcHHHHHHHHHhcCC--CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|..||..+... +.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 678899999888766 889999999999999999999999996 468887754
No 44
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=84.84 E-value=1.1 Score=35.51 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=41.5
Q ss_pred EcHHHHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|.. .|++.+.+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~--~g~v~~~~ 70 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE--LGLVVRTK 70 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEeec
Confidence 46667777765544 67899999999999999999999999964 68887643
No 45
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=84.72 E-value=0.86 Score=38.43 Aligned_cols=49 Identities=8% Similarity=0.146 Sum_probs=43.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+|..|+.||..+. .+++|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEE--MGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHH--CCCEEee
Confidence 5788999999888 88999999999999999999999999974 6888754
No 46
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=84.59 E-value=0.84 Score=35.86 Aligned_cols=49 Identities=6% Similarity=0.209 Sum_probs=44.4
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHH-HhCCCHHHHHHHhhhhhcCCceeee
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKD-ATGIEDKELRRTLQSLACGKVRVLQ 421 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~-~~~i~~~~l~~~L~~L~~~k~~iL~ 421 (540)
.++..|+.||......+..|..+|++ ..+++...+-+++.+|. +.|++.
T Consensus 13 ~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 13 VLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp SSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 46888999999998888999999999 99999999999999996 568886
No 47
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=84.45 E-value=1.1 Score=33.99 Aligned_cols=59 Identities=15% Similarity=0.352 Sum_probs=44.4
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 539 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yi 539 (540)
+..|.+++-..+.++..+|...+-.. -.++..-+...|+.|.++|+|.|..++ ..+.|-
T Consensus 11 e~~vL~~L~~~~~~t~~ei~~~l~~~--~~~s~~Tv~~~l~rL~~kGlv~r~~~g-r~~~y~ 69 (82)
T 1p6r_A 11 ELEVMKVIWKHSSINTNEVIKELSKT--STWSPKTIQTMLLRLIKKGALNHHKEG-RVFVYT 69 (82)
T ss_dssp HHHHHHHHHTSSSEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHhhc--CCccHHHHHHHHHHHHHCCCeEEEecC-CEEEEE
Confidence 34456666567789999988876542 236788999999999999999998643 467774
No 48
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=84.41 E-value=0.77 Score=39.10 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=45.1
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeecC
Confidence 678899999999888899999999999999999999999996 468887653
No 49
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=84.20 E-value=0.78 Score=38.43 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=44.0
Q ss_pred EcHHHHHHHHHhcCCC--CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQ--KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|..||..+...+ .+|..+|++.+|++...+.+.+..|.. .|++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~--~Gli~r~~ 84 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI--KKLLYRKV 84 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH--CCCEEeeC
Confidence 5788999998887766 899999999999999999999999964 68887643
No 50
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=84.19 E-value=0.54 Score=40.76 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=45.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+...+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEecC
Confidence 578899999999888899999999999999999999999996 468887653
No 51
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=83.99 E-value=0.73 Score=36.30 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=44.1
Q ss_pred EcHHHHHHHHHhcCCCCccHHHH----HHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDI----KDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei----~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+.+.+.+|..+| ++.+|++...+.+.|..|. +.|++.+.
T Consensus 6 lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~ 59 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKER 59 (99)
T ss_dssp SBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 67789999999988889999999 8999999999999999996 46888764
No 52
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=83.95 E-value=0.56 Score=36.69 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=44.5
Q ss_pred EEEEcHHHHHHHHHhcC--CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 369 ELAVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 369 ~l~~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
...++..|..||....+ ++.++..+|++.++++...+.++|..|.. .+++.+
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIkr 68 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 68 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEE
Confidence 34578889999988876 56899999999999999999999999974 577764
No 53
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=83.86 E-value=0.86 Score=37.98 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=44.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|+.||..+...+++|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~--~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEE--SGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5788999999988888999999999999999999999999964 6788764
No 54
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=83.78 E-value=2.2 Score=33.66 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
++....||..+.+ ++.|+.||++.+|++...+.++|..|.. .|++.....|+ ...|+++..
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSS----CCEEEECSS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCC----EEEEEECcH
Confidence 4555677777755 6799999999999999999999999964 78887654322 345666654
No 55
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.74 E-value=0.63 Score=38.91 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=44.1
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+|..|+.||......+++|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVC--KGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHH--CCCEEec
Confidence 5788999999888778899999999999999999999999964 6788764
No 56
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=83.65 E-value=0.59 Score=40.50 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=45.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 578899999998887899999999999999999999999996 468888754
No 57
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=83.30 E-value=0.91 Score=39.14 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=44.3
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~~ 97 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRET 97 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeec
Confidence 678899999998888899999999999999999999999996 468887643
No 58
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=83.27 E-value=1 Score=39.77 Aligned_cols=66 Identities=11% Similarity=0.268 Sum_probs=44.6
Q ss_pred cCCceEEEEEEecCceEEEEEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 352 NSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 352 ~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
|+.+++.+...- .-...++..+..||..+.+...+|+.||++.+|++...+.+.|..|.. .|++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~--~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEe
Confidence 445666655432 223457888999999998888999999999999999999999999964 677754
No 59
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=83.02 E-value=2.2 Score=37.08 Aligned_cols=60 Identities=10% Similarity=0.217 Sum_probs=44.2
Q ss_pred HHHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCC
Q 009222 375 FQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 441 (540)
Q Consensus 375 ~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f 441 (540)
+.+.+.+.-+. ...+|.++|++.+|+|...+.+.|..|. +.|++.... ..++-|.+..+-
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~r-----G~~GGy~Lar~p 90 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIR-----GAHGGYVLNGDP 90 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC-----STTCEEEECSCT
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEec-----CCCCceEecCCH
Confidence 34444454443 3579999999999999999999999995 578987543 235678887653
No 60
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=82.72 E-value=0.84 Score=38.95 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=44.9
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|.. .|++.+.+
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~~ 95 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQA--AGLVTRTR 95 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHH--CCCEeecC
Confidence 5788999999988888999999999999999999999999964 68887643
No 61
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=82.64 E-value=0.89 Score=39.68 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=44.1
Q ss_pred EcHHHHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|+.||..+.+ .+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 56789999988876 6789999999999999999999999996 468888754
No 62
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=82.38 E-value=0.77 Score=38.48 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=44.3
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+.+.+.+|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 29 l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~--~gli~~~ 78 (142)
T 3bdd_A 29 ISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEE--SGYIIRK 78 (142)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 6788999999988878899999999999999999999999964 6788654
No 63
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=82.21 E-value=0.7 Score=38.92 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=44.1
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|+.||..+...+++|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~--~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE--QGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5778999998888888999999999999999999999999964 6788764
No 64
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=82.17 E-value=2.3 Score=36.21 Aligned_cols=58 Identities=9% Similarity=0.217 Sum_probs=42.0
Q ss_pred HHHHHHHhcCC-CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 376 QTVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 376 Q~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
++.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++.... ..++-|.+..+
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~r-----G~~GGy~Lar~ 73 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVR-----GAKGGYQLRVP 73 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECS-----SSSSEEEESSC
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecC-----CCCCCeeecCC
Confidence 33344443333 479999999999999999999999995 578887543 23456877654
No 65
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.03 E-value=0.79 Score=33.46 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCC-CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 375 FQTVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 375 ~Q~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
..-.||.+|.+. ..+|..||++.+|++...+.+.|..|.. .+++..
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~--~G~I~~ 57 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK--EDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEec
Confidence 344677777654 5799999999999999999999999964 566654
No 66
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.01 E-value=0.87 Score=38.49 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=45.0
Q ss_pred EcHHHHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|..||..+.. .+.+|..+|++.+|++...+.+.+..|.. .|++.+.+
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~--~glv~r~~ 84 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER--GGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCEeeCC
Confidence 67889999999887 78899999999999999999999999964 68887643
No 67
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=82.01 E-value=0.7 Score=40.39 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=44.6
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.|++.+.
T Consensus 43 lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 688899999998887899999999999999999999999996 46888764
No 68
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=81.95 E-value=0.58 Score=40.41 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+...+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 98 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQR 98 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 566789999888888899999999999999999999999996 468887653
No 69
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=81.94 E-value=0.51 Score=39.46 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=44.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|+.||..+...+++|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR--DGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH--CCCeeec
Confidence 6788999999998888999999999999999999999999964 6788754
No 70
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.60 E-value=0.94 Score=37.80 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=44.0
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+.+.+.+|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~--~glv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDK--RGLIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 6788999999987778999999999999999999999999964 6788653
No 71
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=81.38 E-value=1.2 Score=37.94 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=42.3
Q ss_pred EcHHHHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+.. .+.+|..+|++.++++...+.+.+..|. +.|++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 56789999988764 3578999999999999999999999996 578887654
No 72
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=81.36 E-value=1.2 Score=33.67 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=44.1
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhC----CCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.. .|++.+.+
T Consensus 7 lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~--kGlv~r~~ 61 (82)
T 1p6r_A 7 ISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK--KGALNHHK 61 (82)
T ss_dssp CCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH--CCCeEEEe
Confidence 6888999999888788999999999996 688999999999974 68887653
No 73
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=81.33 E-value=0.86 Score=38.66 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=44.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMER--NGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5788999999988878999999999999999999999999974 6788654
No 74
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=81.18 E-value=3 Score=31.53 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhc
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLAC 414 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 414 (540)
.|--++|+.+.+|+.+|++.+|++++++..+|.-|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 3445677778999999999999999999999999975
No 75
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=80.89 E-value=0.3 Score=38.91 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=42.9
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeecC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 540 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yia 540 (540)
+..|.+++-..+.++..+|...+.. .-.++..-+...|+.|.++|+|+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~--~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ--ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG--GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc--ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 4445556655667888887764322 123578899999999999999999864 36888865
No 76
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.70 E-value=1 Score=37.84 Aligned_cols=50 Identities=10% Similarity=0.040 Sum_probs=44.3
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~--~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEA--DGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 6788999999988778899999999999999999999999964 6788754
No 77
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=80.53 E-value=0.6 Score=39.31 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ--VDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 6788999999998888899999999999999999999999964 6888764
No 78
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=80.41 E-value=1.2 Score=38.45 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=44.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|.. .|++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQA--DGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 5788999999998888999999999999999999999999964 6788754
No 79
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.39 E-value=0.98 Score=38.64 Aligned_cols=50 Identities=6% Similarity=0.062 Sum_probs=44.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+.+.+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEK--RGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 6788999999888777899999999999999999999999964 6788754
No 80
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=80.37 E-value=0.74 Score=39.33 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 84 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQ--KNLIART 84 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeec
Confidence 6788999999988878899999999999999999999999964 6888764
No 81
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.35 E-value=0.89 Score=34.25 Aligned_cols=53 Identities=13% Similarity=0.306 Sum_probs=42.7
Q ss_pred HHHHHhhhcCCC---CCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 478 DAAIVRIMKTRK---VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 478 ~a~IVRimK~~k---~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
+-.|..+|+... .++..+|-..+ .++...|.+.|..|.+.|+|.+.+++|..|
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~L------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKL------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHH------CCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 345677888887 89999987644 477899999999999999999987666544
No 82
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=80.25 E-value=1.3 Score=38.59 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
+++.+.+.-+....+|.++|++.+|+|...+.+.|..|. +.+++.... ..++-|.+..+
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s~r-----G~~GGy~Lar~ 73 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTGTV-----GKNGGYQLDLA 73 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEEEC-----STTCEEECCSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeec-----CCCCCeEecCC
Confidence 344444555555679999999999999999999999995 578886543 13456776654
No 83
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=80.16 E-value=2.3 Score=35.77 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=40.5
Q ss_pred EcHHHHHHHHHhc-CCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFN-DAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn-~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|..+|..+. ..+++|..+|++.+|++...+.+.|..|.. .|++.+.+
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~--~G~v~r~~ 75 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE--LGFVRKVW 75 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEe
Confidence 4566776665543 347899999999999999999999999964 68887653
No 84
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=79.93 E-value=1.3 Score=34.88 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=42.6
Q ss_pred EcHHHHHHHHHhcCC------CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDA------QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~------~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
+++.|..+|..+.+. ..++..+|++.++++...+.+.|..|. +.+++..
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r 68 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADV 68 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEe
Confidence 788999999877654 679999999999999999999999996 4688865
No 85
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=79.88 E-value=0.55 Score=39.97 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=38.0
Q ss_pred EcHHHHHHHHHhcCC--CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+... +++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEeeC
Confidence 678899999888766 789999999999999999999999996 468887653
No 86
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=79.84 E-value=0.88 Score=38.45 Aligned_cols=51 Identities=12% Similarity=0.270 Sum_probs=44.9
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME--QQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH--HHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH--HCCCEEecc
Confidence 578899999988877889999999999999999999999996 468887653
No 87
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=79.72 E-value=0.96 Score=38.60 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=42.4
Q ss_pred EcHHHHHHHHHh--cCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLF--NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+ ++.+++|..+|++.++++...+.+.+..|. +.|++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 577788888665 445679999999999999999999999996 468887654
No 88
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=79.64 E-value=0.84 Score=38.50 Aligned_cols=49 Identities=8% Similarity=0.208 Sum_probs=43.6
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+|+.|..||..+...+. |..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 35 lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~--~Glv~r~ 83 (144)
T 3f3x_A 35 LSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEA--KGLVRRI 83 (144)
T ss_dssp CCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 67889999999888877 9999999999999999999999964 6888764
No 89
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=79.41 E-value=2.3 Score=36.44 Aligned_cols=58 Identities=5% Similarity=0.036 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
+.+.+.+.-+....+|.++|++.+|+|...+.+.+..|. +.|++.... .++-|.+..+
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~r------G~GGy~L~~~ 74 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNR------GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEcc------CCCceEeCCC
Confidence 344444444444679999999999999999999999996 578887543 1456777665
No 90
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=79.38 E-value=1.4 Score=34.38 Aligned_cols=49 Identities=10% Similarity=0.202 Sum_probs=41.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
.++.+..||..+...+.+|..+|++.+|++...+.++|..|.. .|++.+
T Consensus 14 ~~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~--~gli~~ 62 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLER--NGLVKT 62 (100)
T ss_dssp HSHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 3567888888776667899999999999999999999999964 678764
No 91
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.29 E-value=1.1 Score=37.50 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=44.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|.. .|++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~--~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER--DGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 6788999999988878899999999999999999999999964 6788654
No 92
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=79.18 E-value=2.4 Score=36.12 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=42.0
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
+..+..||..+.++..+|..+|++.+|++...+.+.|..|.. .|++.+
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEK--DGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEE
Confidence 456778898898888999999999999999999999999964 678865
No 93
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=79.01 E-value=1.3 Score=46.82 Aligned_cols=134 Identities=11% Similarity=0.102 Sum_probs=86.7
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCCCCCceeEEeccccccc
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKE 457 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~~ 457 (540)
.|.-.+...+..|+.+|...++++...++.+|..|+. .+++...+.+. ....|.+|.+ ....+++.|.+
T Consensus 23 ~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQ--h~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk~---- 91 (534)
T 2xub_A 23 KIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQ--HNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPRY---- 91 (534)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETT---TEEEEEECHH--HHHGGGGHHHH----
T ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHh--cCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHHH----
Confidence 4444444568999999999999999999999999974 77875432110 1123444432 00011111100
Q ss_pred chhhhhhhhHHHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHc-C-----CCCChHHHHHHHHHhhhhccccccCC
Q 009222 458 TVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL-K-----FPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 458 ~~~e~~~~~~~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l-~-----F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
-...+.+--..-|.|+-.+=..+.++.++|+..+.... . =.++...+...+..|++.|||.|.+.
T Consensus 92 ---------l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 92 ---------IYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred ---------HHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 01112222223466777777789999999999887765 1 12678899999999999999999763
No 94
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=78.96 E-value=1.7 Score=33.05 Aligned_cols=53 Identities=13% Similarity=0.306 Sum_probs=42.6
Q ss_pred HHHHHhhhcCCC---CCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 478 DAAIVRIMKTRK---VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 478 ~a~IVRimK~~k---~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
+-.|...|+... .++..+|-.++ .++...|.++|..|.+.|+|.+.+..+..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 455677888877 89999988744 478899999999999999999977666444
No 95
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=78.57 E-value=3.5 Score=34.11 Aligned_cols=48 Identities=10% Similarity=0.258 Sum_probs=36.9
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 386 AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 386 ~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
...+|..+|++.+|+|...+.+.|..|. +.|++..... .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecCC-----CCCceEeCCC
Confidence 3679999999999999999999999996 4788875431 2356777665
No 96
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=78.38 E-value=2.3 Score=36.27 Aligned_cols=49 Identities=8% Similarity=0.228 Sum_probs=43.0
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++..+..||..+.+.+.+|..+|++.+|++...+.+.|..|.. .|++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLES--RGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 5677888998888888999999999999999999999999964 678754
No 97
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=78.21 E-value=1.1 Score=39.96 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHhcC--CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+.. .+++|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 78899999988875 4689999999999999999999999996 468887653
No 98
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=78.15 E-value=1.2 Score=33.60 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=40.5
Q ss_pred hhHHhHHHHHHhhhcCC--CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCC
Q 009222 472 DRQYQVDAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 534 (540)
Q Consensus 472 ~r~~~i~a~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~ 534 (540)
+|...|-..|-+-++.+ ...+..||...+ . ++..-+..-|+.|.++|||.|+.+.+.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~l----g--vS~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAA----G--LSIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHH----T--CCHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHH----C--CCHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 34455555555555554 778888877633 3 467789999999999999999876543
No 99
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=78.04 E-value=0.93 Score=38.61 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=43.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
+|+.|..||..+ ..+++|..+|++.+|++...+.+.+..|. +.|++.+
T Consensus 36 lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp CCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 688899999998 77899999999999999999999999996 4688876
No 100
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=77.85 E-value=1.7 Score=37.20 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=43.3
Q ss_pred EcHHHHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+.. .+..+..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 67889999988865 4567889999999999999999999996 468887654
No 101
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=77.74 E-value=1.1 Score=40.72 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=45.3
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+...+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 578899999988877899999999999999999999999996 478887754
No 102
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=77.44 E-value=2.7 Score=34.26 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=46.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
.++.+..||..+.+ ++.++.||++.+|++...+.++|..|. ..|++.....+ ..-.|+++..
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~~g----r~~~y~l~~~ 80 (118)
T 2jsc_A 19 ADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVATYEG----RQVRYALADS 80 (118)
T ss_dssp SSHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEEECS----SSEEEEESSH
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEEEC----CEEEEEEChH
Confidence 45677788877764 568999999999999999999999995 47888754322 1234666543
No 103
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=76.97 E-value=0.95 Score=38.91 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHh-cCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|+.||..+ ...+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~~ 96 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKAM 96 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeec
Confidence 688899999998 577889999999999999999999999996 478887653
No 104
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=76.90 E-value=5.6 Score=29.06 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCCC
Q 009222 376 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFT 442 (540)
Q Consensus 376 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~ 442 (540)
.-.|.-+|.+..-||+.+|.+.|+=|+..|+..|..++ ++.+.++ -.+.|.+-++|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 44677889999999999999999999999999999883 4554432 235666665553
No 105
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=76.76 E-value=2.5 Score=37.15 Aligned_cols=54 Identities=11% Similarity=0.278 Sum_probs=44.3
Q ss_pred eEEEEEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 367 KKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 367 ~~~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
.....++..+..||..+.++..+|..+|++.+|++...+.+.|..|.. .|++.+
T Consensus 10 ~~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~--~G~I~~ 63 (171)
T 2ia0_A 10 SSEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE--RGVIER 63 (171)
T ss_dssp ----CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEe
Confidence 344557888889999998888999999999999999999999999964 677754
No 106
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.48 E-value=2.9 Score=35.41 Aligned_cols=49 Identities=6% Similarity=0.251 Sum_probs=42.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++..+..||..+.+++.+|..+|++.+|++...+.+.|..|.. .|++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES--FGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 4566778888888888999999999999999999999999964 677764
No 107
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=76.42 E-value=1.8 Score=34.88 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++.+..||..+ ..+++|..+|++.+|++...+.++|..|. +.|++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 45677888777 45679999999999999999999999996 46888654
No 108
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=76.30 E-value=4.5 Score=30.38 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=43.7
Q ss_pred HHHHhhhcCC--CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 479 AAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 479 a~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
..|...+... +.++.++|...+.+. ...++..-|-+.|+.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 4466666665 689999999877653 2247889999999999999999997543334444
No 109
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=76.27 E-value=2 Score=36.21 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=42.6
Q ss_pred EEEEcHHHHHHHHHhcC-----CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 369 ELAVSLFQTVVLMLFND-----AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 369 ~l~~s~~Q~~iLl~Fn~-----~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
.+-+|.-++.+|+++-. ....|.++|++.+|++...+.+.|..|+. .|+|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 45578888888877544 35689999999999999999999999974 577765
No 110
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=76.17 E-value=3.2 Score=33.06 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++.+..||..+. .+.+|+.||++.+|++...+.++|..|. ..|++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 456777777776 4678999999999999999999999996 46888653
No 111
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=76.06 E-value=3.4 Score=32.25 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=41.1
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCc
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQI 535 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~ 535 (540)
+..|...+...+.++..+|...+.+ .+..+...+-+.|..|.++|||+|..+....
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~--~l~is~~tvs~~l~~Le~~gli~r~~~~r~~ 65 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNA--EFPMSTATFYDAKKFLIQEGFVKERQERGEK 65 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHH--HcCCCHHHHHHHHHHHHHCCCEEEEecCCce
Confidence 3445556666788898888654434 5567889999999999999999997644333
No 112
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=75.94 E-value=1.6 Score=40.90 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=43.9
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.|++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 567899999888777889999999999999999999999996 46888764
No 113
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=75.62 E-value=3.7 Score=34.88 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 376 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 376 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
.+.+.+.-+.. . |.++|++.+++|...+.+.|..|. +.+|+.... . ++-|.+..+
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~r-----G-~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSRA-----G-VPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECCS-----S-SSSCEESSC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEeec-----C-CCCceecCC
Confidence 44444554443 5 999999999999999999999995 589987543 2 445777665
No 114
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=75.33 E-value=2.6 Score=31.72 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=35.2
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.|.+.+...+.++..+|...+ ..+...+.+.|+.|.+.|+|++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~l------gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEAL------AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 456666666788888877633 57889999999999999999954
No 115
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=75.21 E-value=1.7 Score=34.87 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 374 LFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 374 ~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
..+..||..+.+ +++|+.||++.+|++...+.++|..|. +.|++...
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 345567776765 789999999999999999999999996 47888754
No 116
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=74.92 E-value=2.3 Score=35.73 Aligned_cols=49 Identities=14% Similarity=0.376 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+..+..||..+.+.+.+|..+|++.+|++...+.+.|..|.. .|++.+.
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~~ 51 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE--KGIIEGY 51 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSSCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEecc
Confidence 456778888888778899999999999999999999999964 6788643
No 117
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=74.91 E-value=2.3 Score=35.36 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=41.5
Q ss_pred EEEcHHHHHHHHHhc---C--CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 370 LAVSLFQTVVLMLFN---D--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn---~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+-++.-|+.||+++- + ....|.++|++.+|++...+.++|..|. +.|+|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 346777777776653 2 2348999999999999999999999997 468888754
No 118
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=74.26 E-value=3.2 Score=35.43 Aligned_cols=49 Identities=4% Similarity=0.226 Sum_probs=42.9
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++..+..||..+.+++.+|..+|++.+|++...+.+.+..|.. .|++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ--AGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--cCCcce
Confidence 5667888998888888999999999999999999999999964 678764
No 119
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=74.01 E-value=2.5 Score=39.99 Aligned_cols=57 Identities=14% Similarity=0.334 Sum_probs=46.4
Q ss_pred HHHHHHhcCC-CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCC
Q 009222 377 TVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 441 (540)
Q Consensus 377 ~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f 441 (540)
..||.+|.+. ..+|+.||++.+|++...+-+.|..|.. .+++.+.+ .+..|.+...+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~--~G~v~~~~------~~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE--AGFVEQVE------GARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEECS------SSSEEEECTTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEcC------CCCcEEcCHHH
Confidence 3578888864 6899999999999999999999999974 78998764 23578876653
No 120
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.91 E-value=3.3 Score=35.25 Aligned_cols=49 Identities=10% Similarity=0.382 Sum_probs=42.8
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++..+..||..+.+++.+|..+|++.+|++...+.+.+..|.. .|++.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK--LGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 5667788998898889999999999999999999999999964 677764
No 121
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=73.75 E-value=3.5 Score=38.40 Aligned_cols=56 Identities=14% Similarity=0.295 Sum_probs=44.7
Q ss_pred HHHHHHhcCCC-CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 377 TVVLMLFNDAQ-KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 377 ~~iLl~Fn~~~-~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
..||.+|.+.+ .+|+.||++.+|++...+.+.|..|. +.+++.+.+ .+..|.+...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~------~~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALG------PAGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECG------GGCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeC------CCCeEEECHH
Confidence 35778887664 79999999999999999999999996 478998754 2356777554
No 122
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=72.44 E-value=3 Score=36.11 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=42.7
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++..+..||..+.+...+|..||++.+|++...+.+.|..|.. .|++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED--AGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEee
Confidence 5667788898888888999999999999999999999999964 677764
No 123
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.42 E-value=3.4 Score=35.27 Aligned_cols=49 Identities=14% Similarity=0.375 Sum_probs=42.7
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++..+..||..+.+++..|+.+|++.+|++...+.+.|..|.. .|++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH--HTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 5667888998888888999999999999999999999999964 677764
No 124
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=72.16 E-value=2.5 Score=34.65 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=43.7
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 539 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yi 539 (540)
|..|.+++-.++.++..+|...+.. .-.++..-+...|+.|.++|||.|..++ ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~--~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQK--YKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhh--cCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 4455666666778899998876542 2235788999999999999999998754 466664
No 125
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=71.57 E-value=3.4 Score=34.69 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=43.8
Q ss_pred EcHHHHHHHHHhcC-CCCccHHHHHHHhC----CCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFND-AQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+|..|..||..+-+ .+.+|..||++.++ ++...+...|..|.. .|++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~--kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK--KNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 67889999999887 58999999999998 799999999999974 6888764
No 126
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=71.05 E-value=3.4 Score=33.66 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++....||..+.+ ++.|+.+|++.+|++...+-++|..|. +.|++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4556677777764 678999999999999999999999996 47888754
No 127
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=70.41 E-value=2.5 Score=34.64 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=44.3
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhC----CCHHHHHHHhhhhhcCCceeeecC
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.+|..|..||..+-+.+++|..||++.++ ++...+...|..|. +.|++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 36889999999988888999999999997 57999999999996 46888764
No 128
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=69.41 E-value=1.9 Score=35.15 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=44.1
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhC----CCHHHHHHHhhhhhcCCceeeecC
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.+|..|..||..+.+.+++|..+|++.++ ++...+.+.|..|. +.|++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~--~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLY--KKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH--HCCCeEEE
Confidence 36888999998887778899999999999 78999999999996 46888763
No 129
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.87 E-value=4.7 Score=33.15 Aligned_cols=47 Identities=15% Similarity=0.337 Sum_probs=38.1
Q ss_pred HHHHHHhhhcCCCC--CChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 477 VDAAIVRIMKTRKV--LSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 477 i~a~IVRimK~~k~--l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.+..|.+.+..... ++..+|...+ ..+...+-+.|+.|.++|||.|.
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l------~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSL------KLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEee
Confidence 46667777776655 8999987654 36889999999999999999985
No 130
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=68.76 E-value=5.4 Score=32.27 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
+..|..||..+.+ +..|+.+|++.+|++...+-++|..|.. .+++..
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4568888888877 6799999999999999999999999964 677754
No 131
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=68.38 E-value=4.1 Score=38.78 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=42.6
Q ss_pred HHHHHHhcCC-CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 377 TVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 377 ~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
..||.+|.+. ..+|+.||++.+|+|...+-+.|..|.. .+.+.+.+ +..|.+...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~~-------~~~Y~LG~~ 88 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARSA-------DGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEECT-------TSEEEECTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECC-------CCcEEehHH
Confidence 3588888876 4799999999999999999999999975 78998754 346776554
No 132
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=68.15 E-value=6.6 Score=27.61 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCCCccHHHHHHHh-----CCCHHHHHHHhhhh
Q 009222 376 QTVVLMLFNDAQKLSFQDIKDAT-----GIEDKELRRTLQSL 412 (540)
Q Consensus 376 Q~~iLl~Fn~~~~~t~~ei~~~~-----~i~~~~l~~~L~~L 412 (540)
+..|+.+++..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44455566767889999999999 99999999999955
No 133
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=67.38 E-value=4.8 Score=31.14 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
.+..|.+.+...+.++..+|...+ ..+...+.+.|..|.+.|+|.+..++...+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l------~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT------GLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 455677778777789988877633 477889999999999999999876554443
No 134
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=67.24 E-value=2.3 Score=36.92 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred EcHHHHHHHHHhcC--CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+.. .+.+|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 96 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRTR 96 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeecC
Confidence 57789999988877 4589999999999999999999999996 468887643
No 135
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=67.18 E-value=4.4 Score=34.40 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=38.3
Q ss_pred EcHHHHHHHHHhcCC-----CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeee
Q 009222 372 VSLFQTVVLMLFNDA-----QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 421 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~-----~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 421 (540)
+|+.|+.||...... +++|..+|++.++++...+.+.+..|.. .|++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~--~glVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR--DGLVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH--TTSBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEE
Confidence 678899999888654 3589999999999999999999999964 57763
No 136
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=67.06 E-value=9 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
++.-|..|+.++ ....|..||++.+|++...+...+..+.
T Consensus 12 L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 12 LTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677788888777 3557999999999999999988887764
No 137
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=66.47 E-value=4.5 Score=33.93 Aligned_cols=59 Identities=7% Similarity=0.130 Sum_probs=42.6
Q ss_pred HHHHHHhhhcC-CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 477 VDAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 477 i~a~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
-+..|++++-. .+.++..+|...+... -.++..-+...|+.|.++|||.|..++ ..+.|
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~--~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~ 69 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR--RDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRY 69 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT--CCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc--CCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEE
Confidence 35566677766 5789999988755321 236788999999999999999998754 46665
No 138
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=66.46 E-value=3.6 Score=38.64 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=44.4
Q ss_pred EcHHHHHHHHHhcCCC--CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQ--KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|+.|+.||..+...+ ++|..+|++.++++...+.+.+..|. +.|++.+.+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 6788999998887764 59999999999999999999999996 578888754
No 139
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=66.43 E-value=5.6 Score=32.15 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=43.3
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHh--CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDAT--GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~--~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++...-.||.++.+.+..|..+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 456678889888877899999999999 999999999999996 47888764
No 140
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=66.30 E-value=3.4 Score=42.74 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=46.9
Q ss_pred EEEcHHHHHHHHHhcCC--CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 370 LAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
.-+|..|..||..+.++ +.+|..+|++.++++...+.+.|..|. +.+++.+..
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 34789999999999888 889999999999999999999999996 578887653
No 141
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=66.09 E-value=7.5 Score=33.55 Aligned_cols=46 Identities=15% Similarity=0.359 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
....||..+.++..+|+.+|++.+|++...+.+.+..|.. .|++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeee
Confidence 3456888898889999999999999999999999999964 677764
No 142
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=65.65 E-value=7.2 Score=30.07 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=35.7
Q ss_pred EEEEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 369 ELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 369 ~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
...+|.-|..||.++- ..+|..||++.+|++...++.++..+.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4457888888888876 468999999999999999999988775
No 143
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=65.44 E-value=11 Score=27.98 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCccHHHHHHHhCC-CHHHHHHHhhhhhc
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGI-EDKELRRTLQSLAC 414 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i-~~~~l~~~L~~L~~ 414 (540)
.|--++|+.+.+|+.+|++.+|+ +++++..+|.-|..
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 45567788889999999999999 99999999999976
No 144
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=65.42 E-value=4.5 Score=31.74 Aligned_cols=48 Identities=10% Similarity=0.163 Sum_probs=37.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
.++....||..+-..++.|+.||++.+|++...+-++|..|. .. ++..
T Consensus 25 ~~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~ 72 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKR 72 (99)
T ss_dssp CSHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEE
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhh
Confidence 356666777444444679999999999999999999999995 35 6653
No 145
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.87 E-value=3.8 Score=31.77 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCC-CccHHHHHHHhCCCHHH-HHHHhhhhhcCCceeee
Q 009222 375 FQTVVLMLFNDAQ-KLSFQDIKDATGIEDKE-LRRTLQSLACGKVRVLQ 421 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~-~~t~~ei~~~~~i~~~~-l~~~L~~L~~~k~~iL~ 421 (540)
-+..+|..+.+.+ .+|..+|++.+|++... +-+.+..|.. .+++.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~--~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR--AGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH--CCCee
Confidence 3456677776665 89999999999999999 9999999964 56775
No 146
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=64.46 E-value=11 Score=30.90 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=38.4
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
++.+..||..+.+ +..++.+|++.+|++...+-++|..|.. .|++..
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~ 91 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSY 91 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 3456667777765 6799999999999999999999999964 678764
No 147
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=63.73 E-value=9.2 Score=35.62 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=43.2
Q ss_pred HHHHHHhcCCC-CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 377 TVVLMLFNDAQ-KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 377 ~~iLl~Fn~~~-~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
..||.+|.+.+ .+|+.||++.+|++...+.+.|..|.. .+++.+. .+..|.+...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~-------~~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRK-------KDKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC-------TTSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEC-------CCCcEEECHH
Confidence 46777887654 799999999999999999999999974 6888764 1345666543
No 148
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=63.69 E-value=1.1 Score=35.65 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=43.3
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhC----CCHHHHHHHhhhhhcCCceeeecCC
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATG----IEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.. .|++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~--KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVK--KEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH--TTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH--CCCEEEEe
Confidence 36778889998887778899999999997 468899999999974 68887654
No 149
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=63.03 E-value=11 Score=28.26 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=33.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
+|.-|..|+.++ ...+|.+||++.+|++...++..+....
T Consensus 22 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 22 LTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 677788888776 3568999999999999999988887664
No 150
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.93 E-value=8.1 Score=30.22 Aligned_cols=51 Identities=12% Similarity=0.286 Sum_probs=43.9
Q ss_pred EEcHHHHHHHHHhcC--CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 371 AVSLFQTVVLMLFND--AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.++..|..|+-+..+ +..++..+|+..++++...+.++|..|.. .+++...
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~V 86 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKAV 86 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEEe
Confidence 468899999998877 56799999999999999999999999974 5777654
No 151
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=62.87 E-value=2.7 Score=39.46 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=44.5
Q ss_pred EcHHHHHHHHHhcCC--CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|..|+.||..+.+. +++|..||++.++++...+...|..|. +.|++.+..
T Consensus 32 lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 32 MTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 788899999998764 589999999999999999999999996 468887654
No 152
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.76 E-value=4.8 Score=32.69 Aligned_cols=57 Identities=25% Similarity=0.472 Sum_probs=41.2
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 539 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yi 539 (540)
.|..++...+.++..+|...+-.. ..++..-+...|+.|.++|||+|..+| ..+.|+
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~--~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQ--KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHHhCCCcCHHHHHHHHhcc--CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 344444446789999988766432 236788899999999999999997654 455554
No 153
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=62.06 E-value=5.2 Score=31.91 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=35.0
Q ss_pred HHHHHh-cCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 378 VVLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 378 ~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.||..+ ...+.+|..+|++.+|++...+.++|..|.. .|++...
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 445444 4444799999999999999999999999964 6888654
No 154
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=61.53 E-value=13 Score=34.22 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=45.4
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec-CCCCCC-CCCCCeEEEccC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK-LPKGRD-VEDDDSFVFNEG 440 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~-~~~~~~-~~~~~~~~~N~~ 440 (540)
++....||.++.+ +++|+.+|++.+|++...+..+|..|.. .|++.. ...+.. -.+...|+++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~--aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMER--EGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHH--TTSEEEEEECC-----CEEEEEECCC
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEeeecCCCCCCccEEEEEccc
Confidence 4556677777765 6799999999999999999999999964 788876 221110 011335777664
No 155
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=61.46 E-value=27 Score=36.56 Aligned_cols=117 Identities=20% Similarity=0.211 Sum_probs=74.7
Q ss_pred CccHHHHHHHh----CCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCCCCCceeEEecccccccchhhhh
Q 009222 388 KLSFQDIKDAT----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENT 463 (540)
Q Consensus 388 ~~t~~ei~~~~----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f~~~~~~i~i~~~~~~~~~~e~~ 463 (540)
++|+.+|.+.+ +++.+.+.++|.-|++...+++.+.+. ..++.|.||-.- + + + .=..
T Consensus 287 ~is~~~I~~~l~~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~----~g~g~y~V~~~~--------~--~---~--~lr~ 347 (534)
T 2xub_A 287 PLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD----SGGGMYVINLHK--------A--L---A--SLAT 347 (534)
T ss_dssp CEEHHHHHHTSCTTCCCCHHHHHHHHHHHHSCTTCCEEECCC----CSSCEEEEBHHH--------H--H---H--HHHH
T ss_pred cccHHHHHHHcCCcccccHHHHHHHHHHHhCCcHHhhhcccc----CCCceEEEeHHH--------H--H---H--HHHH
Confidence 56777777655 567889999999998755678876543 135677765430 0 0 0 0011
Q ss_pred hhhHHHHHhhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 464 STTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 464 ~~~~~~~~~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
..-+.+...|--..=+-|+|+|..++.++-++|-+.+. ....++++.+-.|.+.||+...
T Consensus 348 ~~ie~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a~------i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 348 ATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAM------IPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHC---CHHHHHHHHC------SCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHhC------CCHHHHHHHHHHHHHCCCeEEE
Confidence 22234445555444455999999888888888776553 5679999999999999998764
No 156
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=60.91 E-value=9 Score=36.00 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=43.1
Q ss_pred HHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 378 VVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 378 ~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
.||.+|.+ ...+|+.||++.+|++...+-+.|..|.. .+++.+.+ .+ .|.+...
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~------~~-~Y~lg~~ 81 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRA------DG-SYSLGPE 81 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECT------TS-CEEECHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECC------CC-eEEecHH
Confidence 57777864 46899999999999999999999999974 78888754 12 6777544
No 157
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=59.22 E-value=7.6 Score=32.57 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc
Q 009222 489 KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 528 (540)
Q Consensus 489 k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r 528 (540)
...+.++|-. +...+...+.+.|+.|+++|||++
T Consensus 50 ~~ps~~~LA~------~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQE------GMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHT------TSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3456666554 677899999999999999999999
No 158
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=58.93 E-value=12 Score=28.36 Aligned_cols=50 Identities=8% Similarity=0.172 Sum_probs=39.0
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 534 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~ 534 (540)
-..|..+|+... ++..+|-. .+.++...+.++|..|.+.|+|.+.+++|-
T Consensus 19 ~~~IL~lL~~~g-~sa~eLAk------~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 19 VCEAIKTIGIEG-ATAAQLTR------QLNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHHHHSSST-EEHHHHHH------HSSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHHHHcC-CCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 334567888655 88877765 345888999999999999999999877653
No 159
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=58.91 E-value=7.8 Score=32.17 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=38.8
Q ss_pred EEcHHHHHHHHHh----cCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 371 AVSLFQTVVLMLF----NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 371 ~~s~~Q~~iLl~F----n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
.++..|..+|..+ ...+.+|..+|++.+|++...+.+.|..|.. .|++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~--~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE--KGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH--CCCEEe
Confidence 4566666666544 2457899999999999999999999999964 578765
No 160
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=58.75 E-value=15 Score=31.67 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=41.7
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
++..|.+.+.....++..+|-..+ ..+...+.++|+.|.++|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeeec
Confidence 577899999999999999988754 58899999999999999999974
No 161
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=58.42 E-value=14 Score=33.01 Aligned_cols=49 Identities=8% Similarity=0.219 Sum_probs=41.5
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.+..+..||.++. .+.+|..+|++.+|++...+.+.|..|.. .|++...
T Consensus 18 ~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~--~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKE--AGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 4567778887777 47899999999999999999999999964 6888764
No 162
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=58.09 E-value=14 Score=27.05 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=32.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
+|.-|..|+.++ ...+|.+||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4668999999999999999988877664
No 163
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=57.89 E-value=9.3 Score=30.32 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHh-CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+...||.... .+..++.||++.+ |++...+.+.|..|. +.|++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 4455666555 4789999999999 999999999999996 47888764
No 164
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.39 E-value=12 Score=28.92 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=33.9
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
+|.-|..||.++ ...+|..||++.+|++...++..+....
T Consensus 28 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 28 LTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 678888888777 4568999999999999999988887764
No 165
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=56.79 E-value=2.4 Score=37.38 Aligned_cols=51 Identities=8% Similarity=0.107 Sum_probs=43.1
Q ss_pred EcHHHHHHHHHhcCCCC---ccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQK---LSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~---~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
++..|..||..+...+. +|..+|++.+|++...+.+.+..|. +.|++.+.+
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 120 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERRE 120 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECCC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEecC
Confidence 57889999988876553 9999999999999999999999996 478887653
No 166
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=56.55 E-value=23 Score=29.09 Aligned_cols=49 Identities=6% Similarity=0.148 Sum_probs=35.3
Q ss_pred hHHHHHHhhhcCC-CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 476 QVDAAIVRIMKTR-KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 476 ~i~a~IVRimK~~-k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
.+=+.|.|..... ...+..+|-. +...+...+.++|..|+++|||.|..
T Consensus 36 ~vll~L~~~~~~~~~~ps~~~LA~------~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 36 VLLLHMQSFFEEGVLFPTPAELAE------RMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HHHHHHHHHHTTTCSSCCHHHHHH------TSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3555555554332 2366666555 66789999999999999999999954
No 167
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=56.39 E-value=4.5 Score=31.37 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=36.7
Q ss_pred EcHHHHHHHHHhcC-CCC---ccHHHHHHHhCCCHHHHHHHhhhhhcCCceee
Q 009222 372 VSLFQTVVLMLFND-AQK---LSFQDIKDATGIEDKELRRTLQSLACGKVRVL 420 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~---~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL 420 (540)
++.-+..||+.+.. .+. +|..+|++.+|++...+.+.+..|.. .|++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE--AKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH--TTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CcCc
Confidence 45566777766632 234 99999999999999999999999964 5666
No 168
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=56.24 E-value=24 Score=26.11 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=46.6
Q ss_pred hHHhHHHHHHhhhcCCCCCChHHHHHHHHHHc-----CCCC-ChHHHHHHHHHhhhhccccc-cC
Q 009222 473 RQYQVDAAIVRIMKTRKVLSHTLLITELFQQL-----KFPI-KPADLKKRIESLIDREYLER-DK 530 (540)
Q Consensus 473 r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l-----~F~~-~~~~ik~~Ie~Li~~eyi~r-~~ 530 (540)
+.....+.|+-.+-.-++++.+.+.. .++.+ .|.. |.++++..++.+++.|-|+- ++
T Consensus 5 ~~~v~w~yI~GMLtN~~slpl~RIh~-mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~~g 68 (74)
T 1ldd_A 5 TLQRSLPFIEGMLTNLGAMKLHKIHS-FLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIAN 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHCSEEHHHHHH-HHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHH-HHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEeCC
Confidence 45678999999999999999999776 44444 3443 77999999999999999995 54
No 169
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=56.21 E-value=5.7 Score=33.20 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=34.2
Q ss_pred HHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 380 LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 380 Ll~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+.+..+.+.+|..+|++.+|++...+.+.|..|.. .|++.+.
T Consensus 14 ~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~--~Glv~r~ 55 (142)
T 1on2_A 14 YMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDK--DEYLIYE 55 (142)
T ss_dssp HHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 33344557899999999999999999999999964 6888763
No 170
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=55.62 E-value=7.5 Score=31.18 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHh-CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
..+...||..+.+ +.+++.+|++.+ |++...+.++|..|. +.|++.+.
T Consensus 21 ~~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 21 GKWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp STTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 4455667766554 679999999999 999999999999996 47888764
No 171
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=55.55 E-value=12 Score=35.33 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=44.3
Q ss_pred HHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCC
Q 009222 377 TVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 441 (540)
Q Consensus 377 ~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f 441 (540)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES--------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec--------CCEEEEcHHH
Confidence 357888875 46899999999999999999999999974 7888763 3567776553
No 172
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=55.50 E-value=7.2 Score=30.91 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=42.2
Q ss_pred HHHHHhhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC-CCCcee
Q 009222 478 DAAIVRIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN-NPQIYN 537 (540)
Q Consensus 478 ~a~IVRimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~-~~~~y~ 537 (540)
...|+..++....+ +..+|.. .|.++..-+.++|..|.+.|+|++..+ +.+.|+
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~------~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIAD------RVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 55666777777666 8888776 567899999999999999999998763 245554
No 173
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=54.51 E-value=13 Score=34.69 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=44.5
Q ss_pred HHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccCC
Q 009222 376 QTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGF 441 (540)
Q Consensus 376 Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~f 441 (540)
...||.+|.+ ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...+
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~--------~~~Y~Lg~~~ 72 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS--------GGRWSLTPRV 72 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECGGG
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC--------CCEEEEcHHH
Confidence 3467888875 36799999999999999999999999974 6888763 2567776553
No 174
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=54.49 E-value=5 Score=33.86 Aligned_cols=51 Identities=10% Similarity=0.317 Sum_probs=36.1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc----cCCCCC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER----DKNNPQ 534 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r----~~~~~~ 534 (540)
-+..|...+ ..+.++..+|...+ ..+...+-..|+.|.++|||+| ++.|+.
T Consensus 39 ~q~~iL~~l-~~~~~t~~eLa~~l------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 39 EQSHVLNML-SIEALTVGQITEKQ------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHH------CSCSSHHHHHHHHHHHTTSEEC----------
T ss_pred HHHHHHHHH-HcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 355566777 77889999987643 4667789999999999999998 555543
No 175
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=53.90 E-value=11 Score=32.10 Aligned_cols=49 Identities=6% Similarity=0.132 Sum_probs=41.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.++....||..+. .++.|+.+|++.+|++...+-++|..|. +.|++...
T Consensus 56 ~~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 56 AEPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp TSHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3567788888887 4679999999999999999999999996 47888753
No 176
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=53.77 E-value=14 Score=33.27 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=47.2
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCC-CCCCCCCeEEEccC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKG-RDVEDDDSFVFNEG 440 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~-~~~~~~~~~~~N~~ 440 (540)
++.+..||.++. .++.|..+|++.+|++...+..+|..|. +.|++...... ..-.....|+++..
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEeeccCCCCceEEEEEChH
Confidence 566778887775 4689999999999999999999999996 47888764321 00012345777665
No 177
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=52.69 E-value=36 Score=27.35 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=48.1
Q ss_pred hhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhcccccc
Q 009222 472 DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 472 ~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
-++-.++.+|..++.. +.+.--+|...+.+.. .+.++...+-..|..|.++|+|++.
T Consensus 8 ~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 8 MLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 3456688899998874 7788889998887766 5789999999999999999999985
No 178
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=52.69 E-value=12 Score=34.45 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 376 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 376 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+..+|+..-.+++.|.++|++.+|+++..+..+|..|. +.+++.+.
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 33444333344789999999999999999999999995 57888643
No 179
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=52.63 E-value=20 Score=28.34 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=37.9
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC--CCCCceee
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQIYNY 538 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~--~~~~~y~Y 538 (540)
.|.+.+. .+.++..+|...+. ..+...+-+.|..|.++|+|+|.. .|+....|
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~-----~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMP-----NITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCT-----TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 3455555 57788988876321 478899999999999999999853 34444333
No 180
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=52.30 E-value=15 Score=28.41 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=42.0
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
...|++.+.. +.++..+|...+ ..+...+.+.+..|.+.|+|.+..++...|.+
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 3457777776 888999887644 47788999999999999999987766555543
No 181
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=51.67 E-value=15 Score=29.59 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=40.6
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCC--CCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKF--PIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F--~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
.+-.|...++..+.++..+|-. .+ ..+...+.++|..|.+.|+|++.+
T Consensus 14 ~d~~IL~~L~~~g~~s~~eLA~------~l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 14 WDDRILEIIHEEGNGSPKELED------RDEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHT------STTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHcCCCCHHHHHH------HHhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4566778888888999888776 55 689999999999999999999864
No 182
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=51.64 E-value=14 Score=32.94 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
-|-.|+.+.++++.+|++||++.+|++...+++=|.-|.- -+++.+
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~--~~l~~r 58 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI--PELRKR 58 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC--CCHHHH
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC--cchhhH
Confidence 3678999999999999999999999999999999999953 345433
No 183
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=51.53 E-value=13 Score=31.62 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=37.5
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+...+.++..+|-..+ ..+...+-..|+.|.++|||+|..
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERS------FIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCcCeEecC
Confidence 455666777777788888877633 467788999999999999999854
No 184
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=51.48 E-value=12 Score=31.04 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=35.5
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+ ++..+|...+ ..+..-+.+.|+.|.++|||+|..
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRL------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCC-CCHHHHHHHH------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344566666677 9999988744 478899999999999999999965
No 185
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=50.81 E-value=18 Score=28.86 Aligned_cols=49 Identities=16% Similarity=0.402 Sum_probs=38.8
Q ss_pred EcHHHHHHHHHhcCCCCcc--HHHHHHHh-CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLS--FQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t--~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.......||....+ ++.+ +.||++.+ |++...+.++|..|. +.|++.+.
T Consensus 25 ~~~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 25 GKKYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp HSTTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cCccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34456667776663 5556 99999999 999999999999996 47888764
No 186
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.61 E-value=27 Score=24.78 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=29.6
Q ss_pred EcHHHHHHHHHhc---CCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 372 VSLFQTVVLMLFN---DAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn---~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
++.-|-.|+.+.- +....|.+||++.+|++...++..+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555666664433 2467899999999999999887776544
No 187
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=50.43 E-value=6.7 Score=30.63 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=37.8
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
.+..|...+...+.++..+|...+ ..+...+.+.|..|.++|+|.+..
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345566666666788988887644 578899999999999999999964
No 188
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=50.34 E-value=20 Score=29.82 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=39.1
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHh-CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
..+-..||..+. .+..++.||++.+ |++...+.+.|..|. +.|++.+.
T Consensus 25 ~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 25 GKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp SSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 344556676665 5789999999999 999999999999996 47888764
No 189
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=50.25 E-value=15 Score=28.30 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHhhhcC--CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc
Q 009222 478 DAAIVRIMKT--RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 528 (540)
Q Consensus 478 ~a~IVRimK~--~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r 528 (540)
|..|.+.+.. .+.+...+|-. +...+...+..+|..|.++|||+|
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~------~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRY------KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCcCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 3445555555 56888888876 345788999999999999999995
No 190
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=49.80 E-value=33 Score=31.23 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=43.6
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
.+..|..|+-...+.+.+|..+++..+|.+....+..|..+. +.|++....
T Consensus 152 ~~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e--~~G~l~~D~ 202 (218)
T 3cuq_B 152 EEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAE--KMGHLCRDD 202 (218)
T ss_dssp GGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HcCCEEEEC
Confidence 346899999888888999999999999999999999999986 468887653
No 191
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=49.42 E-value=9 Score=31.77 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=38.3
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+...+.++..+|...+ ..+.+.+...|+.|.++|||+|..
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERV------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH------CCChhhHHHHHHHHHHCCCeEecC
Confidence 455666777777888888877643 478899999999999999999864
No 192
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=48.98 E-value=20 Score=30.10 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=39.1
Q ss_pred hHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 476 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 476 ~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
.-+..|...+...+.++..+|... ...+...+-..|+.|.++|||+|..
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKL------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHH------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 345667777777788888887763 3578899999999999999999964
No 193
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=48.61 E-value=12 Score=31.41 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=35.2
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 528 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r 528 (540)
+..|...+...+.++..+|...+ ..+...+-..|+.|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEe
Confidence 45556666666778888877644 4678899999999999999999
No 194
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=48.53 E-value=15 Score=30.46 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=39.4
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHh-CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
...+...||..+. .+..++.||++.+ |++...+-++|..|. +.|++.+.
T Consensus 33 ~~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 33 TSRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp HSHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred cCCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 3445556776665 5789999999999 799999999999996 47888764
No 195
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=48.27 E-value=12 Score=30.52 Aligned_cols=46 Identities=13% Similarity=0.324 Sum_probs=33.0
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
+..|...+...+.++..+|.. .+..+...+-..|..|.++|||.|.
T Consensus 35 ~~~iL~~l~~~~~~~~~ela~------~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 35 QFGVIQVLAKSGKVSMSKLIE------NMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHSCSEEHHHHHH------HCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHH------HHCCChhHHHHHHHHHHHCCCeeec
Confidence 444455555566777777664 2345677799999999999999994
No 196
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=48.19 E-value=17 Score=30.62 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=36.2
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
-+..|...+...+.++..+|.. .+..+...+-+.|+.|.++|||+|.
T Consensus 45 ~~~~iL~~l~~~~~~t~~ela~------~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 45 TELYAFLYVALFGPKKMKEIAE------FLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHH------HTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3455556666666788888765 3357888999999999999999995
No 197
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=48.14 E-value=17 Score=25.10 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 377 TVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 377 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
..|+.++- ..+|..||++.+|++...+..++....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444443 357999999999999999998887764
No 198
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=48.14 E-value=12 Score=27.82 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=32.0
Q ss_pred HHHHHHhcCC-CCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 377 TVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 377 ~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
=.||-.+.+. .+++..+|++.+|++.++|.++|..|-
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3567777665 689999999999999999999999995
No 199
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=47.79 E-value=12 Score=31.13 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=39.1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
++..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|..
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 355677778777888999988744 478999999999999999998753
No 200
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=47.64 E-value=26 Score=26.43 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=28.6
Q ss_pred EcHHHHHHHHH-h--cCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 372 VSLFQTVVLML-F--NDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 372 ~s~~Q~~iLl~-F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
++.-|-.|+.+ | .+...+|..||++.+|++...++..+..-
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34555555543 3 33367999999999999999887766443
No 201
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=47.50 E-value=20 Score=28.31 Aligned_cols=52 Identities=17% Similarity=0.323 Sum_probs=37.8
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCC-CChHHHHHHHHHhhhhccccccC--CCCCceee
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFP-IKPADLKKRIESLIDREYLERDK--NNPQIYNY 538 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~-~~~~~ik~~Ie~Li~~eyi~r~~--~~~~~y~Y 538 (540)
.|...+. .+.++..+|.. ... .+...+-..|..|.++|+|+|.. .|+....|
T Consensus 29 ~IL~~L~-~~~~~~~eL~~------~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKR------AIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHH------HSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHH-hCCcCHHHHHH------HcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 4555665 67788888876 333 78899999999999999999853 34444433
No 202
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=47.18 E-value=20 Score=33.27 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=42.7
Q ss_pred hHHHHHHhhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 476 QVDAAIVRIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 476 ~i~a~IVRimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
.|...|.. ++....+ +..+|.. .|.++..-+.++|..|.+.|+|.+ . +.++|+
T Consensus 22 ~l~~~I~~-~~~g~~lPse~~La~------~~~vSr~tvr~Al~~L~~~G~i~~-~-g~Gt~V 75 (248)
T 3f8m_A 22 ELDRMLDG-MRIGDPFPAEREIAE------QFEVARETVRQALRELLIDGRVER-R-GRTTVV 75 (248)
T ss_dssp HHHHHHHH-CCTTCBCCCHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEE-E-TTEEEE
T ss_pred HHHHHHhC-CCCCCcCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEe-C-CCEEEE
Confidence 45555666 8888888 7778776 788999999999999999999999 5 456654
No 203
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=46.65 E-value=16 Score=28.82 Aligned_cols=46 Identities=22% Similarity=0.414 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHh-CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDAT-GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+-..||.... .+..++.||++.+ |++...+.++|..|. +.|++.+.
T Consensus 26 ~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 26 WTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp SHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3445665554 5679999999999 599999999999996 47888764
No 204
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=46.57 E-value=10 Score=31.48 Aligned_cols=46 Identities=9% Similarity=0.189 Sum_probs=33.1
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 479 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 479 a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
..|...+...+.++..+|...+ ..+...+-..|+.|.++|||+|..
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l------~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWT------KKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHH------CCCHhhHHHHHHHHHHCCCeeccC
Confidence 3344444444666777766533 478889999999999999999864
No 205
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=46.53 E-value=12 Score=29.74 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=37.2
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNN 532 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~ 532 (540)
....|.+.+ ..+.++..+|.. .+..+...+...|..|.+.|+|.+..++
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~------~l~is~~tv~~~l~~L~~~gli~~~~~g 70 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLAT------RLPVSRQAIAKHLNALQACGLVESVKVG 70 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHH------HSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHH-HcCCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCCeeEEecC
Confidence 344566666 456788888776 3457889999999999999999986543
No 206
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=46.51 E-value=24 Score=22.54 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
.|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 45555543 4799999999999999988877644
No 207
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=46.49 E-value=13 Score=28.38 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=32.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
+|.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 566677777766 3568999999999999999988887664
No 208
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=46.15 E-value=13 Score=30.38 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=32.1
Q ss_pred HHHHhhhcCC--CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 479 AAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 479 a~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
..|...+..+ ..++..+|.. .+..+...+-..|+.|.++|||+|.
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~------~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIIN------HLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHH------HSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHhccCCCcCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3344444444 6677666665 3446788899999999999999994
No 209
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=46.11 E-value=32 Score=28.22 Aligned_cols=47 Identities=11% Similarity=0.231 Sum_probs=36.4
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+. .+.++..+|.. .+..+...+...|..|.++|||+|..
T Consensus 38 ~~~~iL~~l~-~~~~~~~ela~------~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 38 LDFLVLRATS-DGPKTMAYLAN------RYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHHT-TSCBCHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHh-cCCcCHHHHHH------HhCCCchhHHHHHHHHHHCCCEEeec
Confidence 3455566666 77888888776 33578899999999999999999853
No 210
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=45.54 E-value=19 Score=30.33 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
++..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 456688888888899999988744 47889999999999999999983
No 211
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.06 E-value=40 Score=28.28 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=49.2
Q ss_pred EEEcHHHHHHHHHhcC-CCCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 370 LAVSLFQTVVLMLFND-AQKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
+.+|.--..||..+.+ ...+|.+||.+.+ +++...+-++|..|.. .|++.+...+ .....|.++.
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~~~~---~~~~~Y~~~~ 88 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE--SGLVKELTYG---DASSRFDFVT 88 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH--TTSEEEECCT---TSCCEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH--CCCEEEEeeC---CCceEEECCC
Confidence 3467778888987754 4679999999999 8999999999999975 7888765421 1124577764
No 212
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=45.04 E-value=17 Score=30.59 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=38.6
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 528 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r 528 (540)
++-.|.+.+.....++..+|-. .+..+...+.+++..|.++|+|.|
T Consensus 10 ~d~~il~~L~~~~~~s~~ela~------~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSENSRLTYRELAD------ILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHH------HTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3456788888888999999886 335789999999999999999986
No 213
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=44.97 E-value=30 Score=24.89 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=27.6
Q ss_pred EcHHHHHHHHH-h--cCCCCccHHHHHHHhCCCHHHHHHHhhh
Q 009222 372 VSLFQTVVLML-F--NDAQKLSFQDIKDATGIEDKELRRTLQS 411 (540)
Q Consensus 372 ~s~~Q~~iLl~-F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~ 411 (540)
++.-|-.|+.+ | .+....|.+||++.+|++...+...+..
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555533 3 2235689999999999999988776543
No 214
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=44.87 E-value=11 Score=31.21 Aligned_cols=48 Identities=6% Similarity=0.260 Sum_probs=35.0
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
+..|...+...+.++..+|.. .+..+...+.+.|..|.++|||+|..+
T Consensus 39 ~~~iL~~l~~~~~~~~~ela~------~l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 39 QFLVLTILWDESPVNVKKVVT------ELALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp HHHHHHHHHHSSEEEHHHHHH------HTTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHH------HHCCChhhHHHHHHHHHHCCCEEeecC
Confidence 455566666666777777665 234567779999999999999999643
No 215
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=44.78 E-value=55 Score=21.76 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.4
Q ss_pred CCccHHHHHHHhCCCHHHHHHHhh
Q 009222 387 QKLSFQDIKDATGIEDKELRRTLQ 410 (540)
Q Consensus 387 ~~~t~~ei~~~~~i~~~~l~~~L~ 410 (540)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 457999999999999999887654
No 216
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.64 E-value=17 Score=29.95 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=37.0
Q ss_pred HHHHHhhh-cCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIM-KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRim-K~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+ ...+.++..+|...+ ..+...+-..|..|.++|||.|..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSV------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh------CCChhhHHHHHHHHHHCCCeeecC
Confidence 44556666 667788888877643 477889999999999999999964
No 217
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=44.64 E-value=29 Score=27.21 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=27.2
Q ss_pred EcHHHHHHH-HHh--cCCCCccHHHHHHHhCCCHHHHHHHhh
Q 009222 372 VSLFQTVVL-MLF--NDAQKLSFQDIKDATGIEDKELRRTLQ 410 (540)
Q Consensus 372 ~s~~Q~~iL-l~F--n~~~~~t~~ei~~~~~i~~~~l~~~L~ 410 (540)
++.-|-.|+ +.| ++.+.+|++||++.+|++...++..+.
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444454 444 234679999999999999988876654
No 218
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=44.50 E-value=29 Score=23.46 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHhhcchhHHhHHHHHhhHH
Q 009222 236 DLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIE 279 (540)
Q Consensus 236 ~L~~RLL~~~~~~~~~E~~~i~~L~~~~g~~~~~kl~~Ml~D~~ 279 (540)
-+.+|++.......+.-..++..|+..-|........+|+.-+.
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46778887666677888888888888888888888888886553
No 219
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=44.48 E-value=17 Score=30.04 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=33.7
Q ss_pred HHHhhhc-CCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 480 AIVRIMK-TRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 480 ~IVRimK-~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.+..++- ..+.++..+|...+ ..+.+-+-..+..|.++|||+|.
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l------~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEEL------KISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444442 35778888887644 46788999999999999999996
No 220
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=44.05 E-value=10 Score=31.84 Aligned_cols=48 Identities=8% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+...+.++..+|...+ ..+...+-..|+.|.++|||+|..
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~l------~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRHL------DLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHH------TCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeeCC
Confidence 345555666666777777776533 478899999999999999999964
No 221
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=43.84 E-value=14 Score=30.67 Aligned_cols=48 Identities=8% Similarity=0.073 Sum_probs=36.9
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+...+.++..+|...+ ..+...+-..|+.|.++|||+|..
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKW------SLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeecc
Confidence 355566666666678888877633 477889999999999999999954
No 222
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=43.80 E-value=15 Score=30.74 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=38.9
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKI------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 345677888878889999988744 47899999999999999999873
No 223
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=43.73 E-value=28 Score=29.28 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=38.3
Q ss_pred cHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 373 SLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 373 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
..+-..||.... .+..++.||++.+|++...+.+.|..|. +.|++.+.+
T Consensus 23 ~~w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 23 DGWSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp SSSHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CchHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 334455665544 3679999999999999999999999996 478998653
No 224
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=43.10 E-value=11 Score=31.15 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=33.6
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
-+..|...+-..+.++..+|-..+ ..+...+-..|+.|.++|||+|..+
T Consensus 38 ~~~~vL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 38 PDVHVLKLIDEQRGLNLQDLGRQM------CRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHH------C---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 455566666667788888877633 4567789999999999999999643
No 225
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=42.06 E-value=20 Score=29.30 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
+..|...+...+.++..+|... ...+...+-..|+.|.++|||+|.
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~------l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKV------LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHH------HCCChHHHHHHHHHHHHCCCEEec
Confidence 4444555555567777776642 246788999999999999999995
No 226
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=41.86 E-value=28 Score=27.24 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=32.8
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
+|.-|..||.++- ..+|.+||++.+|++...++..+..+.
T Consensus 35 Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 35 LSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp CCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5677777777664 468999999999999999988887764
No 227
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=41.62 E-value=12 Score=29.25 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=33.3
Q ss_pred hcCCCCc-cHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 383 FNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 383 Fn~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+...+.+ |..+|++.+|++...+.++|..|. ..+++...+
T Consensus 29 l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~--~~Gli~~~~ 69 (102)
T 1v4r_A 29 LAPGDTLPSVADIRAQFGVAAKTVSRALAVLK--SEGLVSSRG 69 (102)
T ss_dssp CCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT--TSSCCEEET
T ss_pred CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeC
Confidence 4445667 999999999999999999999995 478887654
No 228
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=41.10 E-value=12 Score=28.72 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=35.4
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+-.|...+...+.++..+|... +..+...+-..|..|.+.|+|.+..
T Consensus 18 ~~~iL~~L~~~~~~~~~ela~~------l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 18 RLGIMIFLLPRRKAPFSQIQKV------LDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHH------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHH------HCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4445555555567888887763 3578889999999999999999743
No 229
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=40.78 E-value=15 Score=30.05 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=30.4
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 481 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 481 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
|...+...+.++..+|.. .+..+...+-+.|+.|.++|||+|.
T Consensus 43 iL~~l~~~~~~t~~ela~------~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 43 ALVRLGETGPCPQNQLGR------LTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp HHHHHHHHSSBCHHHHHH------HTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHcCCCCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEee
Confidence 334443344555555544 3457888999999999999999995
No 230
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=40.70 E-value=19 Score=29.60 Aligned_cols=47 Identities=6% Similarity=0.116 Sum_probs=34.8
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|...+ ..+...+-..|+.|.++|||.|..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l------~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELI------KVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCcCcCHHHHHHHH------CCCHhHHHHHHHHHHHCCCEEeec
Confidence 34445555556677777776533 467889999999999999999953
No 231
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=40.63 E-value=33 Score=26.51 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 376 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 376 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
-+.||..... + ++..+|+..+|+++..+...+..|.. .|++.+.
T Consensus 10 i~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~--~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMD--LEIIRQE 53 (95)
T ss_dssp HHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 3566766664 3 89999999999999999999999964 6888764
No 232
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=40.61 E-value=18 Score=30.58 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=35.6
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|...+ ..+...+.+.|..|.++|||+|..
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~l------~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIFA------VVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH------CCChhHHHHHHHHHHHCCCEEecC
Confidence 45555666666777777776533 477889999999999999999953
No 233
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=40.29 E-value=41 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=28.1
Q ss_pred EcHHHHHHHHH-hcCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 372 VSLFQTVVLML-FNDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 372 ~s~~Q~~iLl~-Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
++.-|-.|+.+ +- ..+|.+||++.+|++...+...+..-
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45556666644 33 34899999999999998887766544
No 234
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=40.14 E-value=18 Score=30.97 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=37.8
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 528 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r 528 (540)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSERV------ALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEee
Confidence 44577788888889999988744 4788999999999999999997
No 235
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=40.01 E-value=17 Score=30.79 Aligned_cols=48 Identities=10% Similarity=0.264 Sum_probs=36.2
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+...+.++..+|...+ ..+...+-..|+.|.++|||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l------~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRT------AMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeeec
Confidence 345566666667788888877633 477889999999999999999954
No 236
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=39.58 E-value=17 Score=29.86 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=34.8
Q ss_pred HHHHHhhhcCCC--CCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRK--VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k--~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+.... .++..+|...+ ..+...+...|+.|.++|||+|..
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l------~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEF------SIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH------CCCcchHHHHHHHHHHCCCEEeeC
Confidence 444555555554 78888876633 467889999999999999999853
No 237
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=39.55 E-value=26 Score=27.56 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=34.6
Q ss_pred HHHhhh-cCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 480 AIVRIM-KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 480 ~IVRim-K~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.|+..+ +....++..+|.. .+..+..-+.+.|..|.+.|+|.+.
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~------~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIAN------QLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHH------TTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 445554 3333688888776 7788999999999999999999987
No 238
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.36 E-value=33 Score=28.43 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=48.8
Q ss_pred EEEcHHHHHHHHHhcCC--CCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 370 LAVSLFQTVVLMLFNDA--QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
+.+|.--..||..+.+. ..+|.+||.+.+ +++...+-++|..|.. .|++.+...+ .....|.++.
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~~~~---~~~~~Y~~~~ 85 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA--AGLVVRHNFD---GGHAVFELAD 85 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEECSS---SSSCEEEESS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH--CCcEEEEEeC---CCceEEEeCC
Confidence 34677778889888654 579999999998 8999999999999974 7888765421 1124577653
No 239
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=39.34 E-value=15 Score=30.02 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=36.4
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|...+ ..+...+...|..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 44555566666788888877643 477889999999999999999953
No 240
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=39.32 E-value=19 Score=30.41 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 528 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r 528 (540)
++..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|.+
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQF------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHH------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHcCCcce
Confidence 355678888888899999988744 4788999999999999999997
No 241
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=39.17 E-value=12 Score=31.81 Aligned_cols=47 Identities=17% Similarity=0.266 Sum_probs=35.5
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|-..+ ..+...+-..|+.|.++|||+|..
T Consensus 52 q~~vL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 52 QFPFLMRLYREDGINQESLSDYL------KIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEEec
Confidence 44555566566777777776533 478899999999999999999854
No 242
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=39.07 E-value=17 Score=29.80 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=37.0
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+...+.++..+|...+ ..+...+...|..|.++|||.|..
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l------~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERL------QIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEecC
Confidence 345566666666778888877633 478889999999999999999864
No 243
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=38.78 E-value=42 Score=27.75 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=39.3
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc--CCCCCceee
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNNPQIYNY 538 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~--~~~~~~y~Y 538 (540)
.|++.+. .+.+...+|...+. ..+...+-..|..|.+.|+|+|. ++++-...|
T Consensus 30 ~IL~~L~-~g~~rf~eL~~~l~-----gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y 84 (131)
T 4a5n_A 30 ILFYHMI-DGKKRFNEFRRICP-----SITQRMLTLQLRELEADGIVHREVYHQVPPKVEY 84 (131)
T ss_dssp HHHHHHT-TSCBCHHHHHHHCT-----TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHHh-cCCcCHHHHHHHhc-----ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEE
Confidence 4556665 67899999886331 47889999999999999999995 334444444
No 244
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=38.69 E-value=19 Score=31.24 Aligned_cols=46 Identities=28% Similarity=0.423 Sum_probs=39.0
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER 528 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r 528 (540)
++-.|.+.+.....++..+|-..+ ..+...+.++|+.|.++|+|+|
T Consensus 18 ~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKDARLTISELSEQL------KKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEe
Confidence 344678888888899999988744 4789999999999999999986
No 245
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=38.69 E-value=35 Score=27.05 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=37.2
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC--CCCCceee
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQIYNY 538 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~--~~~~~y~Y 538 (540)
.|...+. .+.++..+|...+. ..+...+-..|..|.++|+|+|.. .|+....|
T Consensus 26 ~IL~~L~-~~~~~~~eLa~~l~-----~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 26 SLMDELF-QGTKRNGELMRALD-----GITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHHH-HSCBCHHHHHHHST-----TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-----cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 3455554 36788888776321 578899999999999999999853 34444433
No 246
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=38.59 E-value=30 Score=34.00 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=39.6
Q ss_pred HHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 379 VLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 379 iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
|...+.+ .+++|++||++.+|+++..+.+.|..|+. .+++.+. ++.|..+.
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~~--------~~~y~~t~ 91 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILLE--------EDRYVLAK 91 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE--------TTEEEECH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEec--------CCEEeccc
Confidence 4444555 46899999999999999999999999975 7888753 35666553
No 247
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=38.56 E-value=17 Score=31.24 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=33.6
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
+..|...+...+.++..+|...+ ..+...+-..|+.|.++|||.|.
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~l------~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATLL------GVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEEec
Confidence 44455555555567777766533 47788999999999999999994
No 248
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.56 E-value=60 Score=26.76 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=39.7
Q ss_pred HHHHhhhcC-C-CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 479 AAIVRIMKT-R-KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 479 a~IVRimK~-~-k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
.+|..++.. . +-++.++|...+.+.. -.++...|=+.|+.|.+.|+|.+-..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 345555554 3 6899999998886642 24788999999999999999998653
No 249
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.55 E-value=22 Score=30.00 Aligned_cols=49 Identities=10% Similarity=0.086 Sum_probs=36.7
Q ss_pred HhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 482 VRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 482 VRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
.++|...+-++.++|...+.+. ...++...|=+.|+.|.+.|.|.+-..
T Consensus 25 l~~l~~~~h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 25 LEAVDTLEHATPDDILGEVRKT-ASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHSSBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHhcCCCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 3333333478999998877653 235788999999999999999998643
No 250
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=38.55 E-value=17 Score=30.18 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=30.5
Q ss_pred HHHHHhhhcCC--CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+... +.++..+|.. .+..+...+-..|+.|.++|||+|..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~------~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQ------FFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHH------C------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHHhCCCCCCCHHHHHH------HHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 44455555544 6788888775 44567778999999999999999964
No 251
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.51 E-value=70 Score=26.52 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHHhhhcC-CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 478 DAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 478 ~a~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
.-+|.++|.. .+-++.++|...+.+. .-.++..-|=+.|+.|.+.|.|.+-..
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 3445566655 4689999999887654 235788999999999999999998643
No 252
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=38.44 E-value=19 Score=29.88 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=35.3
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|-..+ ..+...+-..|+.|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 42 EWRIISVLSSASDCSVQKISDIL------GLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHcCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 44555666666788888877633 477889999999999999999864
No 253
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=38.41 E-value=44 Score=32.15 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 379 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 379 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
|...+.+ +++|.+||++.+|+++..+.+.|..|+. .+++.+.
T Consensus 30 lf~~l~~-g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~ 71 (332)
T 3i53_A 30 VADHIAA-GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRD 71 (332)
T ss_dssp HHHHHHT-TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred hHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEec
Confidence 4444444 5899999999999999999999999985 7899864
No 254
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.37 E-value=42 Score=25.40 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=27.7
Q ss_pred EcHHHHHHHHH-hcCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 372 VSLFQTVVLML-FNDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 372 ~s~~Q~~iLl~-Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
++.-|-.||.+ +- ..+|..||++.+|++...++..+..-
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44555555544 42 45899999999999999887766543
No 255
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.27 E-value=24 Score=31.37 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=38.7
Q ss_pred hHHhHHHHHHhhhcCCC-CCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCC
Q 009222 473 RQYQVDAAIVRIMKTRK-VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQ 534 (540)
Q Consensus 473 r~~~i~a~IVRimK~~k-~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~ 534 (540)
|...|-.+|...++.++ ..+..+|-..+ . .+..-+.+.|..|-++|||.|+.+.+.
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~l----g--l~~~tv~~~l~~Le~~G~i~~~~~~~r 62 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARRF----R--ITPRGALLHLIALEKKGYIERKNGKPR 62 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHH----T--SCHHHHHHHHHHHHHTTSEECC---TT
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHc----C--CCcHHHHHHHHHHHHCCCEEecCCCcc
Confidence 45556667777776654 78888877533 3 445569999999999999999876543
No 256
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=38.23 E-value=21 Score=28.97 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=38.7
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
...|.+.+...+.++..+|...+ ..+...+-+.|..|.+.|+|.+..+++..|.
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l------~is~stvs~~L~~L~~~Glv~~~~~gr~~~y 97 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANIL------GVTIANASHHLRTLYKQGVVNFRKEGKLALY 97 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEECCEEEE
Confidence 33577777766788888877643 4778899999999999999998765554543
No 257
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=38.09 E-value=54 Score=27.82 Aligned_cols=58 Identities=17% Similarity=0.317 Sum_probs=46.0
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 539 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yi 539 (540)
-++.|.+++++++..+.+||.....+. +|.++..-|.+-|..| |.++....+ +.|.|.
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~-G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~ 63 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREA-GFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYS 63 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHc-CCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEE
Confidence 367788999999999999999866554 8999999998888766 777765433 678885
No 258
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=38.06 E-value=21 Score=30.10 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=38.8
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.+..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|.|.
T Consensus 8 ~~~~iL~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 8 IDRILVRELAADGRATLSELATRA------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 455677788778889999988744 47889999999999999999863
No 259
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=37.83 E-value=40 Score=32.88 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=39.2
Q ss_pred HHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 379 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 379 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
|+..+.+ ++.|++||++.+|+++..+.+.|..|+. .+++.+. ++.|..+.
T Consensus 56 if~~L~~-~~~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~--------~~~y~~t~ 105 (359)
T 1x19_A 56 LFSHMAE-GPKDLATLAADTGSVPPRLEMLLETLRQ--MRVINLE--------DGKWSLTE 105 (359)
T ss_dssp HHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECH
T ss_pred cHHHHcC-CCCCHHHHHHHhCcChHHHHHHHHHHHh--CCCeEee--------CCeEecCH
Confidence 3344444 6899999999999999999999999975 7899763 24677664
No 260
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=37.81 E-value=21 Score=31.69 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=39.5
Q ss_pred EcHHHHHHHHHhcC----C-CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND----A-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~----~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|.-|..||....+ . .+.|+.||++.+|++...+.++|..|. +.|.+.+.+
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le--~~G~i~~~~ 58 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE--KKGYIERKN 58 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC-
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH--HCCCEEecC
Confidence 45667777765533 2 368999999999999999999999996 467887664
No 261
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=37.74 E-value=21 Score=31.05 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=39.7
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEee
Confidence 455778888888899999988754 47899999999999999999873
No 262
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=37.37 E-value=26 Score=29.50 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC--CCCCceee
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK--NNPQIYNY 538 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~--~~~~~y~Y 538 (540)
.|++.+. .+.++..+|...+ ..+...+-++|..|.+.|+|+|.. .|+ ...|
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~l------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSL------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 3555554 5678899987644 478899999999999999999954 355 4444
No 263
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.35 E-value=26 Score=28.86 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=35.8
Q ss_pred HHHHHhhhcC-CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+.. .+.++..+|.. .+..+...+-..|..|.++|||+|..
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~------~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAA------AERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHH------HhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 3444555555 67888888776 33578899999999999999999964
No 264
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=37.33 E-value=22 Score=29.46 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=31.1
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.|...+...+.++..+|... +..+...+-..|..|.++|||+|.
T Consensus 46 ~iL~~l~~~~~~t~~ela~~------l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNK------MYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH------HCCCchhHHHHHHHHHHCCCeeec
Confidence 33344444455666665542 357888999999999999999995
No 265
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=37.11 E-value=34 Score=33.09 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhc
Q 009222 374 LFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLAC 414 (540)
Q Consensus 374 ~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 414 (540)
.-+..||.++++...+|.++|++.+|++...+.+.|..|..
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34567888888888999999999999999999999999964
No 266
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=36.94 E-value=16 Score=28.94 Aligned_cols=53 Identities=9% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
....|++.+.. +.++..+|...+ ..+...+.+.|..|.+.|+|++..++...|
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~l------gis~stvs~~L~~L~~~GlV~~~~~gr~~~ 78 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATAT------GMNLTTASANLQALKSGGLVEARREGTRQY 78 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHHH------TCCHHHHHHHHHHHHHHTSEEEEEETTEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 33456666764 778888877633 477889999999999999998765444444
No 267
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=36.93 E-value=20 Score=29.62 Aligned_cols=44 Identities=7% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 481 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 481 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
|...+-..+.++..+|.. .+..+...+-+.|..|.++|||+|..
T Consensus 45 iL~~l~~~~~~~~~~la~------~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 45 ALLLLWEHETLTVKKMGE------QLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp HHHHHHHHSEEEHHHHHH------TTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred HHHHHHHCCCCCHHHHHH------HHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 333443344555555554 55688999999999999999999964
No 268
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=36.88 E-value=41 Score=32.35 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEc
Q 009222 387 QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFN 438 (540)
Q Consensus 387 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N 438 (540)
++.|++||++.+|+++..+.+.|..|+. .+++.+.. ++.|..+
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~--~g~l~~~~-------~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVA--FEIFQGDT-------RDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET-------TTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCceEecC-------CCeEecC
Confidence 6899999999999999999999999975 78997642 3466665
No 269
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=36.67 E-value=22 Score=29.91 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=38.4
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|++-
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 44677788778889999988744 47889999999999999999873
No 270
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=36.00 E-value=20 Score=30.75 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHHHHhhhcC-CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+.. ...++..+|...+ ..+...+-..|+.|.++|||+|..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l------~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAI------GIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH------CCCHhhHHHHHHHHHHCCCEEeeC
Confidence 4444454444 4567777766533 478889999999999999999965
No 271
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=35.74 E-value=16 Score=30.97 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=34.8
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|.. .+..+...+-..|+.|.++|||+|..
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~------~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLAT------LGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 444555555556677777655 34578889999999999999999964
No 272
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=35.68 E-value=96 Score=22.74 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhhhcccCh-hHHHHHHHHHHHHHhcCCCC
Q 009222 186 AELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGK-DVFEAFYKKDLAKRLLLGKS 246 (540)
Q Consensus 186 ~e~La~y~d~~l~~~~~~~~~~~~~~~l~~i~~l~~~l~~K-d~F~~~Y~~~L~~RLL~~~~ 246 (540)
-+.++++++..+.+ +.+++++.+.++.+...+..+... +.|+..|-..+.+-|..+.+
T Consensus 7 C~~iv~~ve~~l~~---~~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 7 CRKIIQKLEDMVGP---QPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHHCS---SCCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHc---CCcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 36688899998875 346788999999888877664333 67999999999988887653
No 273
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.64 E-value=34 Score=28.09 Aligned_cols=51 Identities=24% Similarity=0.256 Sum_probs=41.3
Q ss_pred EcHHHHHHHHHhcC-CCCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 372 VSLFQTVVLMLFND-AQKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|.--..||..|.+ .+.+|.+||.+.+ +++...+-++|..|.. .|++.+..
T Consensus 9 ~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e--~Glv~~~~ 65 (131)
T 2o03_A 9 STRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMAS--SGLVDTLH 65 (131)
T ss_dssp HHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHT--TTSEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCEEEEE
Confidence 45666778877754 4689999999999 8999999999999974 78887653
No 274
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=35.51 E-value=46 Score=30.52 Aligned_cols=54 Identities=15% Similarity=0.277 Sum_probs=41.2
Q ss_pred HHHHHH-hhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 477 VDAAIV-RIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 477 i~a~IV-RimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
|...|. ..++....+ +..+|.. .|.++..-+.+++..|.+.|+|.+..+ .++|+
T Consensus 14 l~~~I~~g~~~~g~~lPse~~La~------~~~vSr~tvr~Al~~L~~~g~i~~~~g-~G~~V 69 (239)
T 3bwg_A 14 IETYIEEHQLQQGDKLPVLETLMA------QFEVSKSTITKSLELLEQKGAIFQVRG-SGIFV 69 (239)
T ss_dssp HHHHHHHTTCCTTCBCCCHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHHHHHhCCCCCCCCCcCHHHHHH------HHCCCHHHHHHHHHHHHHCCcEEEeCC-ceEEE
Confidence 444444 366777777 6777776 788999999999999999999999764 45553
No 275
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=35.49 E-value=34 Score=30.04 Aligned_cols=43 Identities=5% Similarity=0.138 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCC-CCccHHHHHHHhCCCHHHHHHHhhhhhcCCcee
Q 009222 375 FQTVVLMLFNDA-QKLSFQDIKDATGIEDKELRRTLQSLACGKVRV 419 (540)
Q Consensus 375 ~Q~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~i 419 (540)
-+..||.++.+. ..+|..+|++.+|++...+.+.|..|.. .|+
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~--~G~ 65 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS--LGY 65 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--HTC
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCC
Confidence 355677777643 5699999999999999999999999964 455
No 276
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=35.37 E-value=26 Score=26.24 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=41.2
Q ss_pred hHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChH-HHHHHHHHhhhhccccccCCCC
Q 009222 476 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPA-DLKKRIESLIDREYLERDKNNP 533 (540)
Q Consensus 476 ~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~-~ik~~Ie~Li~~eyi~r~~~~~ 533 (540)
.++..|...+|.++.++..+|-..+ ..+.. .+.+.+..|-+.|+|.+.+.++
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~L------git~~~aVr~hL~~Le~eGlV~~~~~gR 63 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNI------GLTKARDINAVLIDMERQGDVYRQGTTP 63 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHH------CGGGHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHc------CCCcHHHHHHHHHHHHHCCCEEecCCCC
Confidence 3466678899999999988877643 46777 9999999999999998764443
No 277
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=35.27 E-value=18 Score=30.47 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=34.6
Q ss_pred HHHHHHhhh-cCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIM-KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRim-K~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+ ...+.++..+|.. ....+...+-..|..|.++|||+|..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~------~l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSG------ALKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHH------HCSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHH------HHCCChhhHHHHHHHHHHCCCEEeec
Confidence 355566666 4566777777665 23456677899999999999999964
No 278
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=35.20 E-value=32 Score=32.99 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=38.7
Q ss_pred HHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 379 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 379 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
|+..+.+ ++.|++||++.+|+++..+.+.|..|+. .+++.+. ++.|..+.
T Consensus 31 i~~~l~~-~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~~--------~~~y~~t~ 80 (335)
T 2r3s_A 31 VFTAISQ-GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTKQ--------AEGYRLTS 80 (335)
T ss_dssp HHHHHTT-SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECH
T ss_pred hHHHHhc-CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEec--------CCEEecCH
Confidence 3344444 6899999999999999999999999975 7888752 35676653
No 279
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.00 E-value=41 Score=28.40 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=42.2
Q ss_pred EEEcHHHHHHHHHhcCC-CCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 370 LAVSLFQTVVLMLFNDA-QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~-~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+.+|.--..||..|.+. +.+|.+||.+.+ +++...+-++|..|.. .|++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK--ENFISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCcEEEE
Confidence 45777788889887653 689999999998 7999999999999975 6888764
No 280
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=34.74 E-value=36 Score=33.19 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 379 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 379 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
|+..+. .++.|++||++.+|+++..+.+.|..|+. .+++.... ++.|..+.
T Consensus 44 i~~~l~-~~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~~~~~~-------~g~y~~t~ 94 (360)
T 1tw3_A 44 LVDHIL-AGARTVKALAARTDTRPEALLRLIRHLVA--IGLLEEDA-------PGEFVPTE 94 (360)
T ss_dssp HHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE-------TTEEEECT
T ss_pred HHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEecC-------CCeEEeCH
Confidence 444443 36799999999999999999999999975 78887632 34676654
No 281
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=34.74 E-value=20 Score=27.92 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=39.1
Q ss_pred hHHHHHHh-hhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 476 QVDAAIVR-IMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 476 ~i~a~IVR-imK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
.|...|.. .++....+ +..+|.. .|.++..-+.+++..|.+.|+|++..+
T Consensus 19 ~i~~~I~~~~l~~g~~lps~~eLa~------~~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 19 HFRTLIKSGELAPGDTLPSVADIRA------QFGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HHHHHTTTTSCCTTSBCCCHHHHHH------HSSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHHhCCCCCcCCCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 35555655 56666677 7888776 677899999999999999999998764
No 282
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=34.62 E-value=13 Score=28.61 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=34.8
Q ss_pred hhcCCC-CCChHHHHHHHHHHcCCCCChHH-HHHHHHHhhhhccccccCCCCCc
Q 009222 484 IMKTRK-VLSHTLLITELFQQLKFPIKPAD-LKKRIESLIDREYLERDKNNPQI 535 (540)
Q Consensus 484 imK~~k-~l~~~~L~~~v~~~l~F~~~~~~-ik~~Ie~Li~~eyi~r~~~~~~~ 535 (540)
.+...+ .++..+|...+ ..+..- +-..|+.|.++|||++++.|+..
T Consensus 23 ~l~~~~~~~t~~eLa~~l------~is~~t~vs~~l~~Le~~Glv~~~~~drR~ 70 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKAS------GVSEKTFFMGLKDRLIRAGLVKEETLSYRV 70 (95)
T ss_dssp HHHHTTCCCCHHHHHHHH------CCCHHHHHTTHHHHHHHTTSEEEEEEETTE
T ss_pred HHHhcCCCCCHHHHHHHH------CCCchHHHHHHHHHHHHCCCeecCCCCCCe
Confidence 334444 79999987633 467888 99999999999999977666443
No 283
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=34.56 E-value=21 Score=29.69 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=35.1
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|...+ ..+...+...|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l------~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAAL------QMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCeeecC
Confidence 44555555556677777766533 467889999999999999999964
No 284
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=34.53 E-value=27 Score=31.52 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+|+.+-.+++.++..+|++.+|++...+.+++..|. +.|++.+.+
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~~ 54 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKDK 54 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEec
Confidence 344444556789999999999999999999999996 468887643
No 285
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=34.42 E-value=29 Score=31.62 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=38.8
Q ss_pred hhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 483 RIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 483 RimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
.++...+.++..+|.. .|..+....++.|+.+..+|.+-||+...+.|-|
T Consensus 161 ~~~~~~g~vt~~~la~------~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~ 210 (218)
T 3cuq_B 161 ETVSEKGSLTSEEFAK------LVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFY 210 (218)
T ss_dssp HHHHHTSCBCHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEE
T ss_pred HHHHHCCCcCHHHHHH------HhCCCHHHHHHHHHHHHHcCCEEEECCCCceEEe
Confidence 3334467888888776 4568899999999999999999999765555544
No 286
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=34.25 E-value=59 Score=25.70 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHHhhhcCCCCCC--hHHHHHHHHHHcCC-CCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 480 AIVRIMKTRKVLS--HTLLITELFQQLKF-PIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 480 ~IVRimK~~k~l~--~~~L~~~v~~~l~F-~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
.|.+.+. .+.+. ..+|.. .+ ..+...+-+.|..|.+.|+|+|... +..+
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~------~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~ 82 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRS------SIPGISSTILSRRIKDLIDSGLVERRSG-QITT 82 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHH------TSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEE
T ss_pred HHHHHHh-cCCCCCCHHHHHH------HccCCCHHHHHHHHHHHHHCCCEEEeec-CcEE
Confidence 3455555 45555 999886 55 4889999999999999999999865 4443
No 287
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=34.05 E-value=61 Score=22.25 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 481 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 481 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
|..+++..+.++.++|...+.+. ...++...|-+-|+ +-|.+ +...+.+.+.|
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~-~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQD-GYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHT-TCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHh-CCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 33455667889999999877543 45688888998888 55777 43333345656
No 288
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=33.94 E-value=56 Score=32.52 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCC---CCCCCCeEEEccCCC
Q 009222 376 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGR---DVEDDDSFVFNEGFT 442 (540)
Q Consensus 376 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~---~~~~~~~~~~N~~f~ 442 (540)
...||.++.++..+|-.||++.+|++...+.+.++.|.. .+++...+... .=.+...+.+|.+..
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~--~g~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLE--AHLVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCcEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 346787788889999999999999999999999999975 68887643211 012334588888754
No 289
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=33.71 E-value=18 Score=29.55 Aligned_cols=47 Identities=9% Similarity=0.112 Sum_probs=34.9
Q ss_pred HHHHHhhhcCCC--CCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRK--VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k--~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+-..+ .++..+|...+ ..+...+-..|+.|.++|||+|..
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l------~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKAL------QRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHh------CCCcccHHHHHHHHHHCCCEeecC
Confidence 444555554443 78888877633 477889999999999999999853
No 290
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=33.53 E-value=34 Score=32.00 Aligned_cols=43 Identities=14% Similarity=0.402 Sum_probs=32.7
Q ss_pred HHHHHHHHhc-CCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeec
Q 009222 375 FQTVVLMLFN-DAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQK 422 (540)
Q Consensus 375 ~Q~~iLl~Fn-~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 422 (540)
+...|+..+. ....+|+++|++.|||..+++..+|+.| +++..
T Consensus 194 W~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l-----~~l~~ 237 (276)
T 3to7_A 194 WSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL-----NILRY 237 (276)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT-----TCEEE
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC-----CCEEE
Confidence 4445554433 3468999999999999999999999988 56653
No 291
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=33.42 E-value=34 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=40.3
Q ss_pred HHHHHH-hhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 477 VDAAIV-RIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 477 i~a~IV-RimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
|...|. ..++....+ +..+|.. .|.++..-+.+++..|...|+|.+.++ .++|+
T Consensus 20 l~~~I~~g~~~~G~~lPse~~La~------~~~vSr~tvr~Al~~L~~~Gli~~~~g-~G~~V 75 (126)
T 3by6_A 20 IKNEVATDVLSANDQLPSVRETAL------QEKINPNTVAKAYKELEAQKVIRTIPG-KGTFI 75 (126)
T ss_dssp HHHHHHTTSSCTTCEECCHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHHHHHhCCCCCCCcCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEecC-CeEEE
Confidence 444444 356666677 7777776 567899999999999999999999874 45543
No 292
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=33.39 E-value=32 Score=27.65 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=37.2
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 479 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 479 a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
..|++.+. .+.++..+|...+ ..+...+.+.|..|.+.|+|.+..+++..|
T Consensus 24 ~~IL~~L~-~~~~~~~eLa~~l------gis~stvs~~L~~L~~~GlV~~~~~gr~~~ 74 (118)
T 2jsc_A 24 CRILVALL-DGVCYPGQLAAHL------GLTRSNVSNHLSCLRGCGLVVATYEGRQVR 74 (118)
T ss_dssp HHHHHHHH-TTCCSTTTHHHHH------SSCHHHHHHHHHHHTTTTSEEEEECSSSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCceEEEEECCEEE
Confidence 45566665 4567888877633 477889999999999999999865544444
No 293
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.27 E-value=37 Score=28.66 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=43.2
Q ss_pred EEEcHHHHHHHHHhcCC--CCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 370 LAVSLFQTVVLMLFNDA--QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+.+|.--..||..+.+. ..+|.+||.+.+ +++...+-++|..|.. .|++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDD--AGIVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--CCcEEEE
Confidence 34677788899888654 579999999998 8999999999999975 6888764
No 294
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=32.98 E-value=40 Score=25.99 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 479 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 479 a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
..|++.+.. +.++..+|...+ ..+...+...|..|.+.|+|.+..++...|.
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (102)
T 3pqk_A 26 LMLVCTLVE-GEFSVGELEQQI------GIGQPTLSQQLGVLRESGIVETRRNIKQIFY 77 (102)
T ss_dssp HHHHHHHHT-CCBCHHHHHHHH------TCCTTHHHHHHHHHHHTTSEEEECSSSCCEE
T ss_pred HHHHHHHHh-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 356666744 678999987644 3566789999999999999988765544443
No 295
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=32.79 E-value=42 Score=32.84 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
-|+..+. .++.|++||++.+|+++..+.+.|..|+. .+++.+.
T Consensus 40 ~i~~~l~-~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~--~Gll~~~ 82 (374)
T 1qzz_A 40 RLVDHLL-AGADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEGG 82 (374)
T ss_dssp THHHHHH-TTCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEECC
T ss_pred ChHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCEEEe
Confidence 3444443 36799999999999999999999999975 7899763
No 296
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=32.79 E-value=20 Score=29.97 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=32.9
Q ss_pred HHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 479 AAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 479 a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
..|...+...+.++..+|... +..+...+...|..|.++|||+|..
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGER------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHH------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhCCCcCHHHHHHH------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 344444444556666666542 2478889999999999999999964
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.71 E-value=58 Score=27.23 Aligned_cols=59 Identities=7% Similarity=0.006 Sum_probs=42.2
Q ss_pred HHHHhhhcC-CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 479 AAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 479 a~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
.+|..+|.. .+.++.++|...+.+. .-.++...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 345555543 5689999999877554 2247889999999999999999986543333333
No 298
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=32.63 E-value=28 Score=29.29 Aligned_cols=40 Identities=15% Similarity=0.337 Sum_probs=32.7
Q ss_pred HhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 382 LFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 382 ~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
.+...+.+|..+|++.+|++...+.++|..|.. .|++.+.
T Consensus 48 ~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~--~Glv~r~ 87 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGVSQPTVAKMLKRLAT--MGLIEMI 87 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 344446789999999999999999999999974 5777653
No 299
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=32.45 E-value=21 Score=28.13 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=34.7
Q ss_pred HHHHhcCCCCc-cHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 379 VLMLFNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 379 iLl~Fn~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
|+-.+...+.+ |..+|++.+|++...++++|..|.. .|++...+
T Consensus 33 I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~--~GlI~~~~ 77 (102)
T 2b0l_A 33 IFEELDGNEGLLVASKIADRVGITRSVIVNALRKLES--AGVIESRS 77 (102)
T ss_dssp HTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred HHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEe
Confidence 33445455566 9999999999999999999999974 67887543
No 300
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=32.16 E-value=93 Score=23.87 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
|-.-|.+.+.. . +...+|...+ ..+...+.+.++.|.++|||++..+
T Consensus 9 Ii~~IL~~i~~-~-~~~t~La~~~------~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 9 IIQAILEACKS-G-SPKTRIMYGA------NLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp HHHHHHHHHTT-C-BCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHc-C-CCHHHHHHHh------CcCHHHHHHHHHHHHHCCCeEEECC
Confidence 34445555553 3 7788877633 5789999999999999999999854
No 301
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.10 E-value=63 Score=27.68 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHHHHhhhcC-CCCCChHHHHHHHHHHc-CCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKT-RKVLSHTLLITELFQQL-KFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~-~k~l~~~~L~~~v~~~l-~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
.-+|.++|.. .+-++.++|...+.+.. ...++...|=+.|+.|.+.|.|.+-.
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3445565555 47899999999887762 33578899999999999999999973
No 302
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=32.00 E-value=25 Score=27.53 Aligned_cols=53 Identities=8% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
....|+..+. .+.++..+|...+ ..+...+.+.|..|.+.|+|.+..+++..|
T Consensus 27 ~r~~IL~~L~-~~~~~~~ela~~l------~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 79 (106)
T 1r1u_A 27 NRIRIMELLS-VSEASVGHISHQL------NLSQSNVSHQLKLLKSVHLVKAKRQGQSMI 79 (106)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHHHH-hCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 3345556665 5678888877643 467889999999999999999865443333
No 303
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.95 E-value=16 Score=30.03 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=36.1
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
-+..|...+...+.++..+|.. .+..+...+-..|+.|.++|||.|..
T Consensus 37 ~~~~iL~~l~~~~~~t~~ela~------~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 37 QQWRVIRILRQQGEMESYQLAN------QACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHH------HHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 3445555665566777777765 34578899999999999999999964
No 304
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=31.91 E-value=41 Score=31.60 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=24.0
Q ss_pred CccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 388 KLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 388 ~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
.+|+++|++.|||..+++..+|+.|
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l 236 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYL 236 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 7999999999999999999999988
No 305
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=31.89 E-value=44 Score=32.41 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=31.0
Q ss_pred CccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 388 KLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 388 ~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
++|++||++.+|+++..+.+.|..|+. .+++.+.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~--~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAA--LGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHH--CCCeEec
Confidence 899999999999999999999999975 6899764
No 306
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=31.56 E-value=54 Score=27.52 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=44.4
Q ss_pred HhHHHHHHhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhcccccc
Q 009222 475 YQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 475 ~~i~a~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
..++.+|..++.. +.+.-.+|..++.+.. .+.++...+-..|..|.++|||++.
T Consensus 40 g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~ 95 (145)
T 1xma_A 40 GYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSY 95 (145)
T ss_dssp GTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEE
Confidence 3467788888854 6788899988876665 4679999999999999999999985
No 307
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=31.16 E-value=44 Score=27.51 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
.|...+. .+.++..+|...+. ..+...+-+.|..|.+.|+|+|..
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l~-----gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXMG-----GVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHST-----TCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHhc-----cCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4555565 57788888876331 278899999999999999999853
No 308
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=30.91 E-value=63 Score=20.70 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=24.0
Q ss_pred HHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 379 VLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 379 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3334443 3899999999999999988776644
No 309
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=30.90 E-value=39 Score=26.11 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhh
Q 009222 377 TVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQS 411 (540)
Q Consensus 377 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~ 411 (540)
-.|+...+... +|+.+|++.+|++...+.+.|+.
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 34566666554 89999999999999999888763
No 310
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=30.83 E-value=62 Score=29.60 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=36.1
Q ss_pred hhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 484 IMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 484 imK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
.++....+ +..+|.. .|.++..-+.++|..|.+.|+|.+..+ .++|+
T Consensus 26 ~~~~g~~lPse~~La~------~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 73 (236)
T 3edp_A 26 EYKTGMLMPNETALQE------IYSSSRTTIRRAVDLLVEEGLVVRKNG-VGLYV 73 (236)
T ss_dssp SSCCCC--CCHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred CCCCcCCCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEECC-ceEEE
Confidence 56666667 6777766 788999999999999999999999864 45554
No 311
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.64 E-value=62 Score=27.26 Aligned_cols=59 Identities=10% Similarity=0.090 Sum_probs=42.5
Q ss_pred HHHHhhhcC-CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 479 AAIVRIMKT-RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 479 a~IVRimK~-~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
.+|..++.. .+-++.++|...+.+.. -.++...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 89 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENFISVLETSKSGRRY 89 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 345555544 46899999999886653 247888999999999999999986433333333
No 312
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=30.62 E-value=19 Score=25.79 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHhhhcCC-CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 480 AIVRIMKTR-KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 480 ~IVRimK~~-k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
.|..+|+.. +.++..+|-. .+..+.+.+-+.|..|.+.|||...
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~------~lglsr~tv~~~l~~L~~~G~I~~~ 58 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVK------KCQVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHH------HHCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCcEecC
Confidence 466677654 5788888776 3457899999999999999999874
No 313
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=30.23 E-value=58 Score=26.55 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+|..+.+..+.++..+|-..+ ..+..-+.+.|..|.++|||.|..
T Consensus 21 ~l~~l~~~~~~~s~~ela~~l------~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 21 TIKRYNDSGEGAKINRIAKDL------KIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp HHHHHHTTTSCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHhcCCCcCHHHHHHHh------CCChHHHHHHHHHHHHCCCEEecC
Confidence 455555667788998877633 478889999999999999999976
No 314
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=30.14 E-value=36 Score=31.96 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=22.4
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 386 AQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 386 ~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
.+.+|+++|++.|||..+++..+|+.|
T Consensus 212 ~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 212 DKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp ----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 468999999999999999999999988
No 315
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=29.75 E-value=30 Score=28.75 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=33.8
Q ss_pred HHHHHhhhc-CCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMK-TRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK-~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+. ....++..+|...+ ..+...+-..|+.|.++|||+|..
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l------~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATM------GLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHH------TCCHHHHHHHHHHHHTTTSEEC--
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHH------CCCHhHHHHHHHHHHHCCCEEeeC
Confidence 444555553 44567888877643 477889999999999999999954
No 316
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=29.60 E-value=19 Score=29.72 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=36.1
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|...+ ..+...+...|..|.++|||+|..
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~l------~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVLL------GVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CCCchhHHHHHHHHHHCCCeeecC
Confidence 44555555556778888877633 477889999999999999999963
No 317
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=29.34 E-value=66 Score=29.21 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 376 QTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 376 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
...+|.++-+...+|+++|++.+|++.+.+.+.|..+
T Consensus 24 ~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l 60 (220)
T 3f2g_A 24 LVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQA 60 (220)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhC
Confidence 3456677778899999999999999999999999988
No 318
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=29.30 E-value=22 Score=27.51 Aligned_cols=43 Identities=14% Similarity=0.303 Sum_probs=33.9
Q ss_pred hhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 483 RIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 483 RimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
.+....+.++..+|...+ ..+..-+.+.|..|.++|||++..+
T Consensus 29 ~l~~~~~~~t~~ela~~l------~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 29 KMVEIEKPITSEELADIF------KLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHHCSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHcCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEeecc
Confidence 344446788888887633 5788999999999999999999653
No 319
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=29.26 E-value=1e+02 Score=22.50 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhhhc-ccCh-hHHHHHHHHHHHHHhcCCCC
Q 009222 186 AELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRF-IQGK-DVFEAFYKKDLAKRLLLGKS 246 (540)
Q Consensus 186 ~e~La~y~d~~l~~~~~~~~~~~~~~~l~~i~~l~~~-l~~K-d~F~~~Y~~~L~~RLL~~~~ 246 (540)
-+++.+.++..+ + +.+++++...++.+...+.. +.+. +.|+..|...+.+-|+.+.+
T Consensus 7 C~~~v~~le~~l-~---n~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 7 CLTIVQKLKKMV-D---KPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHC-S---SCCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-c---ccCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356777788878 5 34678899899988777654 4333 68999999999999987653
No 320
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.22 E-value=51 Score=27.39 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=28.6
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQS 411 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~ 411 (540)
++.-|-.|+..+ ...+|.+||++.+|++...++..+.-
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 566666676643 35689999999999999888766543
No 321
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=28.66 E-value=1e+02 Score=29.73 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHHHHHHh--cCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEccC
Q 009222 375 FQTVVLMLF--NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEG 440 (540)
Q Consensus 375 ~Q~~iLl~F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~~ 440 (540)
..-.||.++ ++...+|-++|++.+|++...+.+++..|-. .++..... ++.-|.+...
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~--~G~~i~~~------~~~GY~L~~~ 63 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKL--EGCKIDSV------NHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHH--TTCEEEEE------TTTEEEEEEC
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHh--cCCeEEEe------CCCeEEEecC
Confidence 344567666 5566899999999999999999999999965 45433221 2345666553
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=28.65 E-value=1.2e+02 Score=24.73 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=38.5
Q ss_pred CCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 487 TRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 487 ~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
..+-++.++|...+.+.. -.++...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRG-ENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp CCSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred CCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 456899999998886642 357889999999999999999986543333333
No 323
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=28.62 E-value=72 Score=25.38 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=28.6
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
++.-|-.|+.+.- ...+|..||++.+|++...+...+...
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555666665431 234899999999999999887776654
No 324
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=28.49 E-value=93 Score=25.40 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=37.4
Q ss_pred hhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 483 RIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 483 RimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
..++....+ +..+|.. .|.++..-+.+++..|...|+|++.++ .+.|+
T Consensus 20 g~l~~G~~LPse~~La~------~~gvSr~tVr~Al~~L~~~Gli~~~~g-~G~~V 68 (129)
T 2ek5_A 20 GTLSIDQRVPSTNELAA------FHRINPATARNGLTLLVEAGILYKKRG-IGMFV 68 (129)
T ss_dssp TSSCTTSCBCCHHHHHH------HTTCCHHHHHHHHHHHHTTTSEEEETT-TEEEE
T ss_pred CCCCCCCcCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCcEEEecC-CEEEE
Confidence 355666667 6777766 678999999999999999999999874 45543
No 325
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=28.31 E-value=46 Score=32.33 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=35.6
Q ss_pred CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 387 QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 387 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
+++|++||++.+|+++..+.+.|..|+. .+++.+. ++.|..+.
T Consensus 54 g~~t~~elA~~~g~~~~~l~rlLr~l~~--~g~l~~~--------~~~y~~t~ 96 (348)
T 3lst_A 54 GPRTPAELAAATGTDADALRRVLRLLAV--RDVVRES--------DGRFALTD 96 (348)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCCEEec--------CCEEecCH
Confidence 5799999999999999999999999975 6899762 34666554
No 326
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.97 E-value=60 Score=27.36 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHhhhcCC--CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 478 DAAIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 478 ~a~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
..+|..++... +-++.++|...+.+.. -.++...|=+.|+.|.+.|+|.+-..
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 34455666543 5799999998886642 24788999999999999999998643
No 327
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=27.87 E-value=68 Score=29.47 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=40.6
Q ss_pred HHHHHH-hhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 477 VDAAIV-RIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 477 i~a~IV-RimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
|...|. ..++....+ +..+|.. .|.++..-+.+++..|.+.|+|.+..+ .++|+
T Consensus 19 l~~~I~~g~~~~g~~lPse~~La~------~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 74 (243)
T 2wv0_A 19 LKTQIKNGELQPDMPLPSEREYAE------QFGISRMTVRQALSNLVNEGLLYRLKG-RGTFV 74 (243)
T ss_dssp HHHHHHHTSSCTTCBCCCHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEECTT-SCEEE
T ss_pred HHHHHHhCCCCCcCCCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCcEEEeCC-CeEEE
Confidence 344443 356777777 6777776 667999999999999999999999764 45554
No 328
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=27.70 E-value=1.2e+02 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=26.9
Q ss_pred CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceee
Q 009222 387 QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVL 420 (540)
Q Consensus 387 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL 420 (540)
+.-|+..|.+.||+|...++..|..|.. .+|-
T Consensus 32 ~~~nvp~L~~~TGmPRRTiQd~I~aL~e--lgI~ 63 (117)
T 3ke2_A 32 ARHNLLSLGKLTGMPRRTLQDAIASFAD--IGIE 63 (117)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHHTGGG--GTCE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHhhh--CCeE
Confidence 4459999999999999999999999964 4443
No 329
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.58 E-value=28 Score=31.19 Aligned_cols=44 Identities=18% Similarity=0.045 Sum_probs=31.1
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 481 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 481 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
|...+...+.++..+|.. .+..+...+...|+.|.++|||.|..
T Consensus 53 iL~~L~~~~~~t~~eLa~------~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 53 ILWIAYQLNGASISEIAK------FGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp HHHHHHHHTSEEHHHHHH------HTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHCCCcCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 334443344555555554 34578899999999999999999964
No 330
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=27.48 E-value=49 Score=32.29 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=44.7
Q ss_pred EcHHHHHHHH-----HhcCCCCccHHHHHHHh--CCCHHHHHHHhhhhhcCCceeeecCCCCC
Q 009222 372 VSLFQTVVLM-----LFNDAQKLSFQDIKDAT--GIEDKELRRTLQSLACGKVRVLQKLPKGR 427 (540)
Q Consensus 372 ~s~~Q~~iLl-----~Fn~~~~~t~~ei~~~~--~i~~~~l~~~L~~L~~~k~~iL~~~~~~~ 427 (540)
.+-=|-.||. ..+..++++..+|++.+ |+++..+++-|..|- +.|+|.+...|+
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE--~~GlL~r~HgsA 75 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLE--YLGYIYQPHTSA 75 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHH--HTTSEECCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHH--HCCCEEEccCcc
Confidence 3456777887 78888999999999999 999999999999996 478888765443
No 331
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=26.87 E-value=71 Score=30.25 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=48.1
Q ss_pred HHHhhHHhHHHHHHhhhcCCC-CCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc---CCCCCcee
Q 009222 469 VFQDRQYQVDAAIVRIMKTRK-VLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD---KNNPQIYN 537 (540)
Q Consensus 469 ~~~~r~~~i~a~IVRimK~~k-~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~---~~~~~~y~ 537 (540)
....+....-+.+.++|+.+. ..+.++|.+ ...|..=.-++-.-++.|++|++|++. ..++++|+
T Consensus 215 ~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~----~p~~~~~~idle~iL~~Lv~k~lI~~~~~~tk~~~~~~ 283 (290)
T 3c18_A 215 LLQSKVLSGGKYLFEVMRERDRPWTMHELME----ESRLTELKVDLGSLVDFFIRKGLIRISYQRTKGLGVEL 283 (290)
T ss_dssp HHHHTHHHHHHHHHHHHTTSSSCEEHHHHHH----CGGGGGGHHHHHHHHHHHHHTTSEEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHhc----CcccccccCCHHHHHHHHHHcCCeEEecccCCCCcEEE
Confidence 345566677788899999987 899998875 223444445677889999999999984 44666665
No 332
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=26.78 E-value=71 Score=25.33 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=31.7
Q ss_pred CCCCc-cHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 385 DAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 385 ~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
..+.+ |..+|++.+|++...++++|..|.. .|++...+
T Consensus 29 ~G~~lPs~~~La~~~~vSr~tvr~al~~L~~--~Gli~~~~ 67 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQINPLTVSKAYQSLLD--DNVIEKRR 67 (113)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEec
Confidence 34556 9999999999999999999999974 68887543
No 333
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=26.44 E-value=68 Score=25.61 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.7
Q ss_pred EcHHHHHHHHHh-cCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 372 VSLFQTVVLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 372 ~s~~Q~~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
+|+-|..|+.+. - ..+|..||++.+|++...+...+..-
T Consensus 23 L~~~~r~vl~l~y~--~g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 23 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456666666542 3 34799999999999999888776654
No 334
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=26.35 E-value=47 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=35.5
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
...|.+.+ .+.++..+|...+ ..+...+.+.|..|.+.|+|.+..
T Consensus 33 r~~Il~~L--~~~~~~~eLa~~l------~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 33 RRKILRML--DKGRSEEEIMQTL------SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHH--cCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 34466666 5678888877643 578899999999999999999876
No 335
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=26.03 E-value=46 Score=27.34 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=35.8
Q ss_pred HHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCC
Q 009222 480 AIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKN 531 (540)
Q Consensus 480 ~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~ 531 (540)
+|.+.....+.++..+|-.. +..+..-+.+.|..|.++|||.|..+
T Consensus 12 ~i~~l~~~~~~~~~~ela~~------l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 12 QIYMLIEEKGYARVSDIAEA------LAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHHHHSSCCHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhhcCCCCHHHHHHH------hCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 34555556677888887763 35778899999999999999999753
No 336
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=26.01 E-value=14 Score=36.23 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred EEEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 370 LAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+.++.-|..||......+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 16 ~~~~~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le--~~Glv~~~ 67 (345)
T 2o0m_A 16 LDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLK--QLNLIEPS 67 (345)
T ss_dssp ------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 33556788899888888999999999999999999999999994 57888633
No 337
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=26.00 E-value=89 Score=25.52 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=32.0
Q ss_pred CCCCc-cHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 385 DAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 385 ~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
..+.+ |..+|++.+|++...++++|..|.. .|++...+
T Consensus 24 ~G~~LPse~~La~~~gvSr~tVr~Al~~L~~--~Gli~~~~ 62 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRINPATARNGLTLLVE--AGILYKKR 62 (129)
T ss_dssp TTSCBCCHHHHHHHTTCCHHHHHHHHHHHHT--TTSEEEET
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEec
Confidence 34567 9999999999999999999999964 68887644
No 338
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=25.97 E-value=79 Score=22.55 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHhHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCCh---HHHHHHHHHhhhh
Q 009222 474 QYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP---ADLKKRIESLIDR 523 (540)
Q Consensus 474 ~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~---~~ik~~Ie~Li~~ 523 (540)
...+.+.++-+|...+.++...++..++..+-...++ +.....|+-++.+
T Consensus 7 ~e~Lg~iv~eil~~g~~vsnKaIi~~LI~rLE~~~d~~~~d~yR~lLe~v~~~ 59 (64)
T 2oxl_A 7 SAVLGQAVTNLMLSGDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIVLRY 59 (64)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 3568899999999999999999999999998444444 3455666665543
No 339
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.97 E-value=47 Score=27.83 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=41.9
Q ss_pred EEEcHHHHHHHHHhcCCCCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecC
Q 009222 370 LAVSLFQTVVLMLFNDAQKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+.+|.--..||..+.+.+.+|.+||.+.+ +++...+-++|..|.. .|++.+.
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e--~Glv~~i 71 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEE--LGLVSHA 71 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH--CCcEEEE
Confidence 34677777888777665589999999887 6899999999999975 7888764
No 340
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=25.51 E-value=61 Score=22.50 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=32.0
Q ss_pred HHHHh-cCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeee
Q 009222 379 VLMLF-NDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ 421 (540)
Q Consensus 379 iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 421 (540)
+|... |..+-+.++.+++..|++.+++...|..|.. .|++.
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~--KGLI~ 56 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKN--KGLIA 56 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHH--CCCee
Confidence 34343 4456789999999999999999999999974 35654
No 341
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=25.39 E-value=44 Score=26.71 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
..-.|++.+. .+.++..+|.. .+..+...+-..|..|.+.|+|.+...++..|.
T Consensus 19 ~R~~Il~~L~-~~~~~~~eLa~------~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y 72 (118)
T 3f6o_A 19 TRRAVLGRLS-RGPATVSELAK------PFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTC 72 (118)
T ss_dssp HHHHHHHHHH-TCCEEHHHHHT------TCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHH-hCCCCHHHHHH------HhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 3444566665 46778777765 567889999999999999999988655444443
No 342
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=25.21 E-value=87 Score=29.31 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=37.3
Q ss_pred hhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 483 RIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 483 RimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
..++....+ +..+|.. .|.++..-+.++|..|.+.|+|.+..+ .++|+
T Consensus 45 g~~~~g~~lPse~~La~------~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 93 (272)
T 3eet_A 45 GSLPPHTRLPSQARIRE------EYGVSDTVALEARKVLMAEGLVEGRSG-SGTYV 93 (272)
T ss_dssp TSSCTTSBCCCHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEECCC---EEE
T ss_pred CCCCCcCCCcCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEEEecC-ceEEE
Confidence 456666677 6777776 678999999999999999999999874 45553
No 343
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=25.13 E-value=1.1e+02 Score=22.65 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCC
Q 009222 481 IVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNP 533 (540)
Q Consensus 481 IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~ 533 (540)
+++-+...+..+..+|-. ++..+.+.|.+.|-.|-++||+...++.|
T Consensus 20 ~i~~L~~~~~~Ta~~IAk------kLg~sK~~vNr~LY~L~kkG~V~~~~~~P 66 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSN------RLKINKKKINQQLYKLQKEDTVKMVPSNP 66 (75)
T ss_dssp HHHTSCTTCEECHHHHHH------HTTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred HHHhCCCCcchHHHHHHH------HHCCCHHHHHHHHHHHHHCCCEecCCCCC
Confidence 345777777677777665 55678899999999999999999887655
No 344
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.05 E-value=42 Score=26.71 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q 009222 489 KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 539 (540)
Q Consensus 489 k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yi 539 (540)
+-++...|.+ ++.+..+.-+.+|+.|.++|.|..-..+....+|.
T Consensus 59 KlITpsvlse------RlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 59 KQITPSVLSE------RLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp SSEEEHHHHH------HHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred eEEeHHHHHh------hhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 4444444443 55678889999999999999999987777777774
No 345
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=24.76 E-value=50 Score=31.71 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeee-cC
Q 009222 378 VVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQ-KL 423 (540)
Q Consensus 378 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~-~~ 423 (540)
..+......+.+|.+||++.+|++...+++-|..|- +.|++. +.
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~--~~G~v~iri 55 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGR--EQGIVTIAI 55 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEEe
Confidence 333334445669999999999999999999999995 467875 44
No 346
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=24.73 E-value=96 Score=23.32 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhc
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLAC 414 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 414 (540)
.+-.+.....-...++++.|++.++++.+.+...|..|+.
T Consensus 17 ~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~ 56 (84)
T 1ufm_A 17 IEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMIT 56 (84)
T ss_dssp HHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3334444455568999999999999999999999998875
No 347
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=24.72 E-value=94 Score=24.16 Aligned_cols=43 Identities=26% Similarity=0.371 Sum_probs=36.8
Q ss_pred CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 488 RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 488 ~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
...+.-.+++.++.+...+.++...+=..|..|.++|||++..
T Consensus 22 ~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~ 64 (99)
T 2co5_A 22 GSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE 64 (99)
T ss_dssp TTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee
Confidence 3456668889888877677899999999999999999999875
No 348
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=24.63 E-value=47 Score=22.53 Aligned_cols=34 Identities=26% Similarity=0.580 Sum_probs=27.0
Q ss_pred ChhhHHHHHHHhhhc-c--chHHHHHHHHHHHHHHhh
Q 009222 96 RTEDLQRMYSLFSRV-N--ALESLRQALAMYIRRTGH 129 (540)
Q Consensus 96 ~~~~l~~ly~l~~~~-~--~~~~l~~~~~~~i~~~g~ 129 (540)
++++.-.+|.++..+ . ....++++++.||.+.|.
T Consensus 32 kkedypqifdflenvprgtktahirealrryieeige 68 (70)
T 2q2k_A 32 KKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp ETTTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC-
T ss_pred hhhhchHHHHHHHcCCCccchHHHHHHHHHHHHHhcc
Confidence 356778899999988 3 457889999999999874
No 349
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=24.51 E-value=72 Score=32.42 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=35.1
Q ss_pred HHHhhhcCC--CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc--CCC-CCceeec
Q 009222 480 AIVRIMKTR--KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD--KNN-PQIYNYL 539 (540)
Q Consensus 480 ~IVRimK~~--k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~--~~~-~~~y~Yi 539 (540)
.|.+.+-.+ +.++..+|-. +...+...+-+.|+.|.++|||+|. ++| +..++|+
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~------~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~l 466 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAK------CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYV 466 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHH------SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEEC
T ss_pred HHHHHHHhCCCCCcCHHHHHH------HHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEE
Confidence 334444444 4555555444 5567889999999999999999994 333 3444443
No 350
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=24.49 E-value=35 Score=29.92 Aligned_cols=47 Identities=4% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHhhhcC--CCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKT--RKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~--~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+.. .+.++..+|...+ ..+.+.+-..|..|.++|||+|..
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l------~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKM------GTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEecc
Confidence 4444444443 4577777776533 467889999999999999999953
No 351
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=24.41 E-value=77 Score=25.94 Aligned_cols=53 Identities=11% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHhhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 478 DAAIVRIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 478 ~a~IVRimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
++.+-..++-.-.+ +..+|.. .|.++..-+.+++..|...|+|++.++ .++|+
T Consensus 25 ~~I~~G~l~pG~~LPser~La~------~~gVSr~tVReAl~~L~~eGlv~~~~g-~G~~V 78 (134)
T 4ham_A 25 EQVVKGVLQEGEKILSIREFAS------RIGVNPNTVSKAYQELERQEVIITVKG-KGTFI 78 (134)
T ss_dssp HHHHHTSSCTTCEECCHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHHHcCCCCCCCCCccHHHHHH------HHCCCHHHHHHHHHHHHHCCcEEEEcC-cEEEE
Confidence 33344567777777 6677766 567999999999999999999998774 45554
No 352
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=24.35 E-value=78 Score=25.71 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=32.1
Q ss_pred CCCCc-cHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 385 DAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 385 ~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
..+.+ |..+|++.+|++...++++|..|.. .|++...+
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~Al~~L~~--~Gli~~~~ 69 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAKAYKELEA--QKVIRTIP 69 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEec
Confidence 34567 9999999999999999999999974 68887654
No 353
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.28 E-value=62 Score=29.90 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=32.7
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
.+|.-|-.|+.+. ...+|.+||++.+|++...++.++...
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra 236 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNI 236 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3677777788776 367999999999999999998887655
No 354
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=24.23 E-value=23 Score=29.54 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=33.8
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+.++..+|...+ ..+...+-..|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l------~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERM------EVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeecC
Confidence 34444455445667777766533 477889999999999999999864
No 355
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=24.01 E-value=1e+02 Score=24.89 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCc-cHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 386 AQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 386 ~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
.+.+ |..+|++.+|++...++++|..|.. .|+|...+
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~--~G~i~~~~ 71 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER--AGYIYAKR 71 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCeEEEec
Confidence 3556 7999999999999999999999974 68887654
No 356
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=23.87 E-value=59 Score=29.69 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=35.9
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhc
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLAC 414 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 414 (540)
.+|.-|..||.+.- ...|.+||++.+|+++..++.++..+..
T Consensus 175 ~Lt~re~~vl~~~~--~G~s~~eIa~~l~is~~tV~~~~~~~~~ 216 (237)
T 3szt_A 175 RLTARETEMLKWTA--VGKTYGEIGLILSIDQRTVKFHIVNAMR 216 (237)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 47888888888874 4589999999999999999999988853
No 357
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=23.77 E-value=43 Score=31.45 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=25.8
Q ss_pred HHHHHHHHhcC-CCCccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 375 FQTVVLMLFND-AQKLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 375 ~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
+-..|+..+.+ .+.+|+++|++.|||..+++..+|+.|
T Consensus 194 W~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 194 WSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 33445544433 358999999999999999999999988
No 358
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=23.73 E-value=1.1e+02 Score=24.28 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=39.2
Q ss_pred cCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceeec
Q 009222 486 KTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYL 539 (540)
Q Consensus 486 K~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Yi 539 (540)
...+-++...|.+ ++.+..+.-+.+|+.|.++|.|..-..+....+|.
T Consensus 55 pk~KlITpsvlse------RlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 55 PTYRYVSVSVLVD------RLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp SSCSSBSHHHHHH------TTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred cCCeEEeHHHhhh------hhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 4456677766665 88899999999999999999999987777777774
No 359
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=23.63 E-value=86 Score=24.80 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=35.6
Q ss_pred hhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCce
Q 009222 484 IMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIY 536 (540)
Q Consensus 484 imK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y 536 (540)
.++....+ +..+|.. .|.++..-+.+++..|...|+|++.++ .+.|
T Consensus 26 ~~~~G~~lPs~~~La~------~~~vSr~tvr~al~~L~~~Gli~~~~~-~G~~ 72 (113)
T 3tqn_A 26 SYVEGEMIPSIRKIST------EYQINPLTVSKAYQSLLDDNVIEKRRG-LGML 72 (113)
T ss_dssp SSCTTCEECCHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred CCCCCCcCcCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEecC-CeEE
Confidence 55555566 6777766 567899999999999999999998764 3444
No 360
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=23.17 E-value=79 Score=27.37 Aligned_cols=54 Identities=6% Similarity=0.106 Sum_probs=43.7
Q ss_pred hHHHHHHhhhcCCCCCChHHHHHHHHHHc--CCCCChHHHHHHHHHhhhhccccccC
Q 009222 476 QVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 476 ~i~a~IVRimK~~k~l~~~~L~~~v~~~l--~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
.++-+|...+.. +.++--+|...+.... .+.++...|-..+..|.+.|+|++..
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 356677777764 7899999988775545 35799999999999999999999864
No 361
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=22.62 E-value=68 Score=25.19 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=43.0
Q ss_pred HHhHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 474 QYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 474 ~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+-.++.+|..++.. +.+.--+|..++.+ .+.++...+-..|..|.++|||++..
T Consensus 7 ~g~l~~~IL~~L~~-~~~~gyel~~~l~~--~~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 7 ALLIEYLILAIVSK-HDSYGYDISQTIKL--IASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp HHHHHHHHHHHHHH-SCEEHHHHHHHHTT--TCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHc-CCCcHHHHHHHHHH--HhCCCcChHHHHHHHHHHCCCeEEEe
Confidence 44678888888875 56777787776544 56789999999999999999999863
No 362
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=22.41 E-value=68 Score=28.33 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=38.9
Q ss_pred hHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 476 QVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 476 ~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
..+..|.+.+. .+.++..+|-..+ ..+...+.+.|..|.+.|+|++.
T Consensus 20 ~~~~~IL~~L~-~~~~s~~eLA~~l------glS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 20 DTRRKILKLLR-NKEMTISQLSEIL------GKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 34566788887 5789999988744 47889999999999999999986
No 363
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=22.18 E-value=51 Score=32.36 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=31.6
Q ss_pred CCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecC
Q 009222 387 QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL 423 (540)
Q Consensus 387 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 423 (540)
+++|++||++.+|+++..+.+.|..|+. .+++.+.
T Consensus 70 g~~t~~eLA~~~g~~~~~l~rlLr~L~~--~g~l~~~ 104 (369)
T 3gwz_A 70 GPRTATALAEATGAHEQTLRRLLRLLAT--VGVFDDL 104 (369)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSSEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCCEEEe
Confidence 5799999999999999999999999985 6899864
No 364
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=21.82 E-value=63 Score=27.28 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 477 VDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 477 i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
....|++.+. ++.++..+|.. .+..+...+-.-|..|.+.|+|++..++...|.
T Consensus 59 ~R~~IL~~L~-~~~~t~~eLa~------~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 59 TRRRLVQLLT-SGEQTVNNLAA------HFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHHHHHGG-GCCEEHHHHHT------TSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHH-hCCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 4455677776 56788777765 556889999999999999999987654444443
No 365
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=21.81 E-value=69 Score=22.71 Aligned_cols=22 Identities=9% Similarity=0.321 Sum_probs=18.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHhh
Q 009222 389 LSFQDIKDATGIEDKELRRTLQ 410 (540)
Q Consensus 389 ~t~~ei~~~~~i~~~~l~~~L~ 410 (540)
+|+.||++..|++...+-+.|+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999988877665
No 366
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=21.64 E-value=1.3e+02 Score=24.22 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhc
Q 009222 375 FQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLAC 414 (540)
Q Consensus 375 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 414 (540)
....++.+|.+ .+|+++|+..-|++..++..+|..++.
T Consensus 21 t~~~t~~l~~~--G~sleeIA~~R~L~~~TI~~Hl~~~v~ 58 (122)
T 3iuo_A 21 MKVSIVQQIDR--KVALDDIAVSHGLDFPELLSEVETIVY 58 (122)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44566677775 489999999999999999999998853
No 367
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=21.53 E-value=30 Score=28.48 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=33.6
Q ss_pred HHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 478 DAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 478 ~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
+..|...+...+. +..+|...+ ..+.+.+-..|+.|.++|||.|..
T Consensus 39 ~~~iL~~l~~~~~-~~~~la~~l------~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 39 DFSILKATSEEPR-SMVYLANRY------FVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHHHHSCE-EHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCC-CHHHHHHHH------CCChhHHHHHHHHHHHCCCEEecc
Confidence 4455555555555 667766532 477889999999999999999964
No 368
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=21.44 E-value=61 Score=24.36 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=40.6
Q ss_pred HHHHHHhhhcCC-CCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCceee
Q 009222 477 VDAAIVRIMKTR-KVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNY 538 (540)
Q Consensus 477 i~a~IVRimK~~-k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~Y 538 (540)
+++.|.-+.+++ +.++-++|..+.. ..+.++.-.+|+.|+..|.|+.-.+ ++...|
T Consensus 15 ie~~IL~l~~~~P~GItd~~L~~~~p-----~~~~~~r~~aIN~LL~~gkiel~K~-~~~liY 71 (81)
T 2dk8_A 15 IENRIIELCHQFPHGITDQVIQNEMP-----HIEAQQRAVAINRLLSMGQLDLLRS-NTGLLY 71 (81)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHCT-----TSCHHHHHHHHHHHHHHTSEEEEEC-SSSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHCC-----CCCHHHHHHHHHHHHHcCCeEEEec-CCeEEE
Confidence 445566666776 7899888776431 2478899999999999999887543 356665
No 369
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=21.35 E-value=48 Score=27.25 Aligned_cols=40 Identities=15% Similarity=0.381 Sum_probs=33.2
Q ss_pred hcCCCCc-cHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 383 FNDAQKL-SFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 383 Fn~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
+...+.+ |..+|++.+|++...++++|..|.. .|++...+
T Consensus 32 l~pG~~LPser~La~~~gVSr~tVReAl~~L~~--eGlv~~~~ 72 (134)
T 4ham_A 32 LQEGEKILSIREFASRIGVNPNTVSKAYQELER--QEVIITVK 72 (134)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET
T ss_pred CCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHH--CCcEEEEc
Confidence 3444667 8999999999999999999999974 68887654
No 370
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=21.32 E-value=1.2e+02 Score=24.52 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=36.6
Q ss_pred hhhcCCCCC-ChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccCCCCCcee
Q 009222 483 RIMKTRKVL-SHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYN 537 (540)
Q Consensus 483 RimK~~k~l-~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~~~~~~y~ 537 (540)
..++....+ +..+|.. .|.++..-+.+++..|...|+|++.++ .++|+
T Consensus 29 g~~~~g~~Lps~~~La~------~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~V 77 (125)
T 3neu_A 29 GEWKGEDKLPSVREMGV------KLAVNPNTVSRAYQELERAGYIYAKRG-MGSFV 77 (125)
T ss_dssp TSSCTTCBCCCHHHHHH------HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred CCCCCCCCCCCHHHHHH------HHCcCHHHHHHHHHHHHHCCeEEEecC-CEEEE
Confidence 355656666 4777766 567899999999999999999999864 35543
No 371
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=21.26 E-value=95 Score=23.17 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=28.6
Q ss_pred CCccHHHHHHH--h------CCCHHHHHHHhhhhhc-CCceeee
Q 009222 387 QKLSFQDIKDA--T------GIEDKELRRTLQSLAC-GKVRVLQ 421 (540)
Q Consensus 387 ~~~t~~ei~~~--~------~i~~~~l~~~L~~L~~-~k~~iL~ 421 (540)
..+|+-||.+. + |||++.+.++|..|.. .|..|+.
T Consensus 26 sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~ 69 (79)
T 3htu_A 26 SVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIIT 69 (79)
T ss_dssp SEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 46899999882 2 7899999999999987 6677775
No 372
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=21.21 E-value=60 Score=29.68 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=34.8
Q ss_pred HhcCCCCccHHHHHHHhCCCHHHHHHHhhhhhcCCceeeecCC
Q 009222 382 LFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 424 (540)
Q Consensus 382 ~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 424 (540)
.+...+.++..+|++.+|++...++++|..|.. .|++...|
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~--~Glv~~~~ 83 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLEA--QSLLRVET 83 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEET
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEeC
Confidence 345567899999999999999999999999964 68887654
No 373
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=21.13 E-value=69 Score=26.89 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=27.2
Q ss_pred EcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhh
Q 009222 372 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQ 410 (540)
Q Consensus 372 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~ 410 (540)
++.-|-.|+.+. ..+.+|.+||++.+|++...++..|.
T Consensus 94 Lp~~~r~vl~L~-~~~g~s~~EIA~~lgis~~tV~~~l~ 131 (157)
T 2lfw_A 94 MTPLSRQALLLT-AMEGFSPEDAAYLIEVDTSEVETLVT 131 (157)
T ss_dssp SCTTHHHHHTTT-SSSCCCHHHHHHTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455555565542 23568999999999999988776654
No 374
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=21.02 E-value=87 Score=26.91 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=28.4
Q ss_pred HHhcCCCCccHHHHHHHhC--CCHHHHHHHhhhhh
Q 009222 381 MLFNDAQKLSFQDIKDATG--IEDKELRRTLQSLA 413 (540)
Q Consensus 381 l~Fn~~~~~t~~ei~~~~~--i~~~~l~~~L~~L~ 413 (540)
++|-..+++|+++|++.++ ++.+.+...|..|.
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 4455677899999999999 99999999998885
No 375
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=20.93 E-value=1.3e+02 Score=22.04 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=28.8
Q ss_pred HHHHHHhcCCC--CccHHHHHHHhCCCHHHHHHHhhhh
Q 009222 377 TVVLMLFNDAQ--KLSFQDIKDATGIEDKELRRTLQSL 412 (540)
Q Consensus 377 ~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L 412 (540)
..|+-..++.+ ..++++|+..+|++.+.+.++|.-+
T Consensus 35 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 35 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 45566777765 4689999999999999998888755
No 376
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=20.90 E-value=1.1e+02 Score=24.30 Aligned_cols=54 Identities=13% Similarity=0.162 Sum_probs=42.6
Q ss_pred HhHHHHHHhhhcCCCCCChHHHHHHHHHHc-CCC--CCh-HHHHHHHHHhhhhccccccC
Q 009222 475 YQVDAAIVRIMKTRKVLSHTLLITELFQQL-KFP--IKP-ADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 475 ~~i~a~IVRimK~~k~l~~~~L~~~v~~~l-~F~--~~~-~~ik~~Ie~Li~~eyi~r~~ 530 (540)
..++.+|..++.. +.+.-.+|...+.+ . .+. ++. ..+-..|..|.++|+|++..
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~-~g~~~~~is~~~tly~~L~~Le~~GlI~~~~ 69 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAE-FGIEIPGIGHMGNIYRVLADLEESGFLSTEW 69 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHT-TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHH-hCCcccCCCCcchHHHHHHHHHHCCCeEEEe
Confidence 4577788888854 78888998887754 4 223 788 89999999999999999863
No 377
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.64 E-value=1.1e+02 Score=27.47 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=35.2
Q ss_pred EEcHHHHHHHHHhcCCCCccHHHHHHHhCCCHHHHHHHhhhhh
Q 009222 371 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA 413 (540)
Q Consensus 371 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 413 (540)
.+|.-|..||.++- ...|.+||++.+|++...++.++....
T Consensus 173 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 173 WLDPKEATYLRWIA--VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47888888887764 568999999999999999999988775
No 378
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=20.63 E-value=2.4e+02 Score=22.33 Aligned_cols=57 Identities=7% Similarity=0.040 Sum_probs=46.3
Q ss_pred hhHHhHHHHHHhhhcCCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhcccccc
Q 009222 472 DRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERD 529 (540)
Q Consensus 472 ~r~~~i~a~IVRimK~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~ 529 (540)
-++-.++.+|..++. .+.+.--+|...+.+.-.+.++...+-..|..|.++|+|++.
T Consensus 7 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~ 63 (117)
T 4esf_A 7 MLKGSLEGCVLEIIS-RRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIE 63 (117)
T ss_dssp HHHHHHHHHHHHHHH-HSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHChHHHHHHHHHH-cCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 355678899999887 477888898887765413478999999999999999999985
No 379
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.46 E-value=1e+02 Score=25.46 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=47.8
Q ss_pred EEEcHHHHHHHHHhcCC-CCccHHHHHHHh-----CCCHHHHHHHhhhhhcCCceeeecCCCCCCCCCCCeEEEcc
Q 009222 370 LAVSLFQTVVLMLFNDA-QKLSFQDIKDAT-----GIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNE 439 (540)
Q Consensus 370 l~~s~~Q~~iLl~Fn~~-~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~~N~ 439 (540)
+.+|.--..||..+.+. +.+|.+||.+.+ +++...+-++|..|.. .|++.+...+ .....|.++.
T Consensus 10 ~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e--~Glv~~~~~~---~g~~~Y~~~~ 80 (139)
T 3mwm_A 10 GRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD--AGEVDVLRTA---EGESVYRRCS 80 (139)
T ss_dssp CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--TTSSEEEECT---TSCEEEECCS
T ss_pred CccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--CCCEEEEEcC---CCceEEEECC
Confidence 45677778888877664 689999999988 6899999999999975 6888764311 1123566654
No 380
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=20.34 E-value=74 Score=26.57 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=27.8
Q ss_pred CCCCCChHHHHHHHHHHcCCCCChHHHHHHHHHhhhhccccccC
Q 009222 487 TRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDK 530 (540)
Q Consensus 487 ~~k~l~~~~L~~~v~~~l~F~~~~~~ik~~Ie~Li~~eyi~r~~ 530 (540)
....++..+|-.. +..+.+-+-..|+.|.++|||+|..
T Consensus 43 ~~~~~~~~eLa~~------l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 43 LPPEQSQIQLAKA------IGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp SCTTSCHHHHHHH------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCcHHHHHHH------HCcCHHHHHHHHHHHHhCCCeEeec
Confidence 3445555565542 2477888999999999999999853
Done!