BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009223
         (540 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
           With Harmine
          Length = 513

 Score = 28.9 bits (63), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 13/116 (11%)

Query: 300 LLNFHGTNTYLWLSFIPAI---LILLIGTKLHRVVVKLAVEIMDKCPWDGYHQFN----- 351
           L+ +    TY + +  P +   +  L    L R +  +  EI    PW+  H        
Sbjct: 86  LVQYVKGKTYPFRAAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPWEAQHADKWDKMT 145

Query: 352 ---LRDDLFWFGKPRLLLHLIQLISFQNALEMATFLWSLWEIKEPSCFMENRSFIV 404
              L D + W    R   +L   I+  +     + LW LW +K+  C    R F V
Sbjct: 146 MKELIDKICWTKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQ--CGGTTRIFSV 199


>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form A
 pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form A
 pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form B
 pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
           Crystal Form B
          Length = 527

 Score = 28.9 bits (63), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 300 LLNFHGTNTYLWLSFIPAI---LILLIGTKLHRVVVKLAVEIMDKCPWDGYHQFN----- 351
           L+ +    TY +    P +   +  L    L R +  +  EI    PW+  H        
Sbjct: 97  LVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPWEAQHADKWDKMT 156

Query: 352 ---LRDDLFWFGKPRLLLHLIQLISFQNALEMATFLWSLWEIKEPSCFMENRSFIV 404
              L D + W    R   +L   I+  +     + LW LW +K+  C    R F V
Sbjct: 157 MKELIDKICWTKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQ--CGGTTRIFSV 210


>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
           Harmine
          Length = 513

 Score = 28.5 bits (62), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 300 LLNFHGTNTYLWLSFIPAI---LILLIGTKLHRVVVKLAVEIMDKCPWDGYHQFN----- 351
           L+ +    TY +    P +   +  L    L R +  +  EI    PW+  H        
Sbjct: 86  LVQYVKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPWEAQHADKWDKMT 145

Query: 352 ---LRDDLFWFGKPRLLLHLIQLISFQNALEMATFLWSLWEIKEPSCFMENRSFIV 404
              L D + W    R   +L   I+  +     + LW LW +K+  C    R F V
Sbjct: 146 MKELIDKICWTKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQ--CGGTTRIFSV 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.135    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,521,244
Number of Sequences: 62578
Number of extensions: 474244
Number of successful extensions: 1172
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 3
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)