Query 009223
Match_columns 540
No_of_seqs 159 out of 245
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 21:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 2E-183 4E-188 1443.3 37.5 439 8-462 1-442 (478)
2 PF06305 DUF1049: Protein of u 64.7 29 0.00064 27.7 6.6 47 18-64 18-64 (68)
3 PRK11677 hypothetical protein; 63.4 14 0.00031 34.8 5.1 44 17-64 2-45 (134)
4 COG1033 Predicted exporters of 59.1 21 0.00045 42.0 6.6 55 22-76 252-317 (727)
5 TIGR02976 phageshock_pspB phag 54.2 39 0.00084 29.0 5.8 28 17-44 3-30 (75)
6 PF07219 HemY_N: HemY protein 54.0 29 0.00064 30.7 5.3 46 14-59 13-65 (108)
7 TIGR03144 cytochr_II_ccsB cyto 45.0 91 0.002 31.4 7.9 29 52-80 142-170 (243)
8 PF01578 Cytochrom_C_asm: Cyto 34.5 1.2E+02 0.0026 29.4 6.7 30 52-81 116-145 (214)
9 PF12801 Fer4_5: 4Fe-4S bindin 30.7 91 0.002 23.4 4.1 25 16-40 1-25 (48)
10 TIGR00540 hemY_coli hemY prote 29.9 91 0.002 33.3 5.3 42 14-55 38-86 (409)
11 PF12273 RCR: Chitin synthesis 29.4 42 0.00092 30.6 2.4 17 18-34 2-18 (130)
12 PF09878 DUF2105: Predicted me 27.5 70 0.0015 32.4 3.7 47 279-330 158-207 (212)
13 PRK10747 putative protoheme IX 27.4 98 0.0021 33.0 5.1 40 13-52 37-83 (398)
14 PF15468 DUF4636: Domain of un 27.3 28 0.00061 35.6 0.9 39 270-313 25-63 (243)
15 COG3105 Uncharacterized protei 26.6 1.4E+02 0.003 28.6 5.2 61 16-80 6-75 (138)
16 TIGR03777 RPE4 Rickettsial pal 26.2 30 0.00064 25.4 0.6 9 347-355 24-32 (32)
17 TIGR00921 2A067 The (Largely A 26.0 2.4E+02 0.0051 32.3 8.1 58 19-76 620-687 (719)
18 TIGR01106 ATPase-IIC_X-K sodiu 25.7 2.2E+02 0.0048 34.7 8.1 43 351-393 809-853 (997)
19 PF06295 DUF1043: Protein of u 23.4 1.5E+02 0.0033 27.4 4.9 48 32-80 10-66 (128)
20 PLN02250 lipid phosphate phosp 23.3 9.4E+02 0.02 25.8 12.1 71 13-100 64-134 (314)
21 PHA03105 EEV glycoprotein; Pro 22.6 88 0.0019 30.8 3.2 33 20-52 9-41 (188)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=2.1e-183 Score=1443.27 Aligned_cols=439 Identities=45% Similarity=0.846 Sum_probs=418.7
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 009223 8 EGASLADTPTWAVATVITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALEKIKDEMMLFGVLSLLMGHWIVFVAKICVK 87 (540)
Q Consensus 8 ~~rsLe~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKiKeELMLLGFISLLLtv~q~~IskICIp 87 (540)
|+|+||+|||||||+||+|||++|+++||++|++||||+|++||+|++||||||+|||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCceecCCCCCccccccccccccccccCCcchhhhhcccCCCCCCCC-CCccccccchhhhHHHHHHHHHHHHHHH
Q 009223 88 SSALSSRFYPCASKADLTSVAHTLVSRSNFLNSSLDREQVQTRHGSSYYCP-EGQESFASHESLEQLHRFIFVLGVTHVS 166 (540)
Q Consensus 88 ~s~~~s~~lPC~~~~~~~~~~~~~~~~~~~~~RRlLa~~~~~~~~~~~~C~-~GkvpliS~egLHQLHIFIFVLAV~HV~ 166 (540)
+++++ +|+||+.+++..+..+ ..++||+|+..++ .+.++|+ ||||||+|+|||||||||||||||+||+
T Consensus 81 ~~~~~-~~lPC~~~~~~~~~~~------~~~~r~ll~~~~~---~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV~HV~ 150 (478)
T PF03094_consen 81 SSYAS-TMLPCKPPEESSKEGS------SHNRRRLLASGAA---EGSDYCPKKGKVPLISAEGLHQLHIFIFVLAVVHVL 150 (478)
T ss_pred hhHHh-cccCCCCccccccccc------chhhhhhhhhhcc---cccCcccccCccccccchhHHHHHHHHHHHHHHHHH
Confidence 99998 9999986544333211 2267899885332 3578997 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhhhhhhhhccchhhhcccccccccccccccccCCCCCCchHHHHHHHHHhhhccCCc
Q 009223 167 YSFVAIALAMIKIYSWRTWENQAITTAIQIEQESSEAASTNRKMKRLSTFIYHRTSHPWSQHKVLVWLLCFSRQFWSSIN 246 (540)
Q Consensus 167 Ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~~~~~~v~~~r~~~rqttF~~~h~~~~ws~~~~l~wi~cFfRQF~~SV~ 246 (540)
|||+||+||++|||+||+||+|+++++++..++++++ +++||++|+|+|+ ++|++++++.|++|||||||+||+
T Consensus 151 Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~-----~~~~qt~F~r~h~-~~w~~~~~~~wi~~FfrQF~~SV~ 224 (478)
T PF03094_consen 151 YSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRF-----RLTRQTTFVRRHT-SFWSKSPVLSWIVCFFRQFYGSVT 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCccee-----eeecccHHHHhhc-CCcccChhHHhHHHHHHHhhcccc
Confidence 9999999999999999999999999999988877778 9999999999998 789999999999999999999999
Q ss_pred hhhHHHHHHHHhhhc-CCCCCCCHHHHHHHHHhhhhccccccchhHHHHHHHHhhcccCCcchhhhhhhHHHHHHHHHhh
Q 009223 247 RADYMALRLGFITTH-QLPLTYDFHKYMHRSMEEEFRDIVGISVPLWIYAIGCTLLNFHGTNTYLWLSFIPAILILLIGT 325 (540)
Q Consensus 247 k~DYltLR~GFI~~H-~~~~~FdFhkYi~RsLEdDFk~VVGIS~~lW~~vvlFlLlnv~Gw~~yfWlsfiPliliLlVGt 325 (540)
|+||+|||+|||++| .++++|||||||+||||||||+||||||+||++||+|+|+|++|||+|||++|||++++|+|||
T Consensus 225 k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGt 304 (478)
T PF03094_consen 225 KSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGT 304 (478)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHH
Confidence 999999999999999 5559999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcC-CCCCccccccCCCccccCCchHHHHHHHHHHHhhhHHHHHHHHHHhccCCCcccccCcceeE
Q 009223 326 KLHRVVVKLAVEIMDKC-PWDGYHQFNLRDDLFWFGKPRLLLHLIQLISFQNALEMATFLWSLWEIKEPSCFMENRSFIV 404 (540)
Q Consensus 326 KLq~IIt~lalei~e~~-~~~G~p~v~p~D~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~fG~~SCf~~~~~~ii 404 (540)
|||+||++||+|++|++ +++|+|+|||+|++|||+||+|||+||||+|||||||||||+|+||+||++||||++..+++
T Consensus 305 KLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i 384 (478)
T PF03094_consen 305 KLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYII 384 (478)
T ss_pred HHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCcccee
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeecccccccccccchhhhhhhhhcccccccccchhHHHHHHhHHHHHHhhccCC
Q 009223 405 IRLTFGTVTQCWCSFITFPLYVIITQMGSRFKRSVVSENVRVSLGNWKKRVRAKQSAS 462 (540)
Q Consensus 405 ~Rl~~Gv~vQ~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~l~~W~~~ak~k~~~~ 462 (540)
+|+++|+++|++|||+|||||||||||||+||++||+|+|+++|++||++||||+++.
T Consensus 385 ~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~ 442 (478)
T PF03094_consen 385 IRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHK 442 (478)
T ss_pred eehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999998875
No 2
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=64.73 E-value=29 Score=27.72 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHHHHHHHH
Q 009223 18 WAVATVITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALEKIKDEM 64 (540)
Q Consensus 18 WaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKiKeEL 64 (540)
+-++++.++..++++++=-.+.....+=.|++.+.+-..+++++.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666777777777777777766777788889999999886
No 3
>PRK11677 hypothetical protein; Provisional
Probab=63.40 E-value=14 Score=34.79 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=29.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHHHHHHHH
Q 009223 17 TWAVATVITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALEKIKDEM 64 (540)
Q Consensus 17 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKiKeEL 64 (540)
+|..|++++|+. +++=.++.+++..= .++++.|.+-||+.|.||
T Consensus 2 ~W~~a~i~livG---~iiG~~~~R~~~~~-~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVG---IIIGAVAMRFGNRK-LRQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHH---HHHHHHHHhhccch-hhHHHHHHHHHHHHHHHH
Confidence 498888766543 34444444444331 146789999999999998
No 4
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=59.08 E-value=21 Score=42.04 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhcc-----hHHHHHHHHHHHHHH------HHHHHHHHHHh
Q 009223 22 TVITVMIIFGFFVHTCLKHFGKWLEKTKR-----KSLLAALEKIKDEMM------LFGVLSLLMGH 76 (540)
Q Consensus 22 ~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~k-----kaL~eALeKiKeELM------LLGFISLLLtv 76 (540)
...++.++|++.+++++|...++.+.+++ +|+.+|+.+...=++ -+||+||+.+-
T Consensus 252 s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 252 TSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 44566778889999999999999987776 477777777766655 37999998754
No 5
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=54.18 E-value=39 Score=29.00 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 009223 17 TWAVATVITVMIIFGFFVHTCLKHFGKW 44 (540)
Q Consensus 17 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~ 44 (540)
.|.+++-.++|+++-..+.-.+||..||
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777777777778999999999987
No 6
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=54.04 E-value=29 Score=30.67 Aligned_cols=46 Identities=15% Similarity=0.508 Sum_probs=35.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHH-------HhHHHhhhcchHHHHHHHH
Q 009223 14 DTPTWAVATVITVMIIFGFFVHTCLKH-------FGKWLEKTKRKSLLAALEK 59 (540)
Q Consensus 14 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkkk~kkaL~eALeK 59 (540)
||.-|...++..+++++-.++.+.+-. +.+|+++++++.-++||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777888888765 5678888888888888775
No 7
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=45.03 E-value=91 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009223 52 SLLAALEKIKDEMMLFGVLSLLMGHWIVF 80 (540)
Q Consensus 52 aL~eALeKiKeELMLLGFISLLLtv~q~~ 80 (540)
+=.+.|||+--.....||+-|.++...+.
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778999999999999999999987775
No 8
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=34.55 E-value=1.2e+02 Score=29.37 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 009223 52 SLLAALEKIKDEMMLFGVLSLLMGHWIVFV 81 (540)
Q Consensus 52 aL~eALeKiKeELMLLGFISLLLtv~q~~I 81 (540)
+-.+.||++-.-++..||+.|.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 446888999999999999999998876653
No 9
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=30.71 E-value=91 Score=23.42 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=17.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Q 009223 16 PTWAVATVITVMIIFGFFVHTCLKH 40 (540)
Q Consensus 16 PTWaVA~Vc~v~V~iSl~~Er~lH~ 40 (540)
|.|...+...++++++++..|.-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455556666888889999986544
No 10
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=29.86 E-value=91 Score=33.29 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH-------HHhHHHhhhcchHHHH
Q 009223 14 DTPTWAVATVITVMIIFGFFVHTCLK-------HFGKWLEKTKRKSLLA 55 (540)
Q Consensus 14 ~TPTWaVA~Vc~v~V~iSl~~Er~lH-------~lgk~Lkkk~kkaL~e 55 (540)
+|+=|+.+++..+++++-+++++++. .+..|+.++|++.-.+
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~~k~~~ 86 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKRRKAQK 86 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 56667666666666666668889885 4456877755533333
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.37 E-value=42 Score=30.65 Aligned_cols=17 Identities=29% Similarity=0.745 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 009223 18 WAVATVITVMIIFGFFV 34 (540)
Q Consensus 18 WaVA~Vc~v~V~iSl~~ 34 (540)
|++++|++++++|-|++
T Consensus 2 W~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFL 18 (130)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 77777666666655543
No 12
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=27.48 E-value=70 Score=32.35 Aligned_cols=47 Identities=28% Similarity=0.453 Sum_probs=28.3
Q ss_pred hhhccccccchhHHHHHHHHhhcccCCcchhhhhhhHHH---HHHHHHhhhHHHH
Q 009223 279 EEFRDIVGISVPLWIYAIGCTLLNFHGTNTYLWLSFIPA---ILILLIGTKLHRV 330 (540)
Q Consensus 279 dDFk~VVGIS~~lW~~vvlFlLlnv~Gw~~yfWlsfiPl---iliLlVGtKLq~I 330 (540)
|-...+-||.|.+|++.-+..++ .+-+|+.++=+ -+++=||+|+--|
T Consensus 158 egi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgLI 207 (212)
T PF09878_consen 158 EGIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGLI 207 (212)
T ss_pred ehhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhhh
Confidence 34567788999999876544333 34456554432 3556677776543
No 13
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.39 E-value=98 Score=33.02 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=28.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHH-------HhHHHhhhcchH
Q 009223 13 ADTPTWAVATVITVMIIFGFFVHTCLKH-------FGKWLEKTKRKS 52 (540)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~-------lgk~Lkkk~kka 52 (540)
=+|+=|..++++.+++++.+++++++.. +..|+.++|++.
T Consensus 37 ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~~~ 83 (398)
T PRK10747 37 IETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKRRR 83 (398)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 3677788888888887777888988854 456877766533
No 14
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=27.30 E-value=28 Score=35.57 Aligned_cols=39 Identities=28% Similarity=0.636 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhccccccchhHHHHHHHHhhcccCCcchhhhhh
Q 009223 270 HKYMHRSMEEEFRDIVGISVPLWIYAIGCTLLNFHGTNTYLWLS 313 (540)
Q Consensus 270 hkYi~RsLEdDFk~VVGIS~~lW~~vvlFlLlnv~Gw~~yfWls 313 (540)
+.|=-| +||+-.++| +..||-||+|++|.=. .+.++|++
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 445444 899888887 8899999988776532 36666754
No 15
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.64 E-value=1.4e+02 Score=28.58 Aligned_cols=61 Identities=20% Similarity=0.258 Sum_probs=37.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhh
Q 009223 16 PTWAVATVITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALEKIKDEMM---------LFGVLSLLMGHWIVF 80 (540)
Q Consensus 16 PTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKiKeELM---------LLGFISLLLtv~q~~ 80 (540)
-+|..|.+-+| |++++-.++-+|++- +-|+++.+..-|||+|.+|= .----+||=|..|+|
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36887766543 344455555555554 23456788888999998763 223456777777766
No 16
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=26.22 E-value=30 Score=25.44 Aligned_cols=9 Identities=33% Similarity=0.272 Sum_probs=7.1
Q ss_pred ccccccCCC
Q 009223 347 YHQFNLRDD 355 (540)
Q Consensus 347 ~p~v~p~D~ 355 (540)
+|+||||||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 678888886
No 17
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=25.97 E-value=2.4e+02 Score=32.32 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcc----hHHHHHHHHHHHHH------HHHHHHHHHHHh
Q 009223 19 AVATVITVMIIFGFFVHTCLKHFGKWLEKTKR----KSLLAALEKIKDEM------MLFGVLSLLMGH 76 (540)
Q Consensus 19 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~k----kaL~eALeKiKeEL------MLLGFISLLLtv 76 (540)
.++.+....+++++.++..+|.+.+|.+++++ +++.+|+.+.=.=+ +.+||.+|+++-
T Consensus 620 ~~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~ 687 (719)
T TIGR00921 620 FLAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSH 687 (719)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 44555666688899999999999999876543 56666666655533 345676666543
No 18
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=25.71 E-value=2.2e+02 Score=34.67 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=32.8
Q ss_pred ccCC--CccccCCchHHHHHHHHHHHhhhHHHHHHHHHHhccCCC
Q 009223 351 NLRD--DLFWFGKPRLLLHLIQLISFQNALEMATFLWSLWEIKEP 393 (540)
Q Consensus 351 ~p~D--~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~fG~~ 393 (540)
+|++ +=..++++.++...+-..++|-.+.+++|+|.++.+|+.
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4543 336677777777777778899999999999998877753
No 19
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.45 E-value=1.5e+02 Score=27.35 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHHHhhhcchHHHHHHHHHHHHHH---------HHHHHHHHHHhhhhh
Q 009223 32 FFVHTCLKHFGKWLEKTKRKSLLAALEKIKDEMM---------LFGVLSLLMGHWIVF 80 (540)
Q Consensus 32 l~~Er~lH~lgk~Lkkk~kkaL~eALeKiKeELM---------LLGFISLLLtv~q~~ 80 (540)
+++=.++.++++.= .++++.|.+-|++.|.||= +-.-.-||=...+++
T Consensus 10 ~iiG~~~~r~~~~~-~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 10 LIIGFLIGRLTSSN-QQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444544431 1346789999999999983 555555666666554
No 20
>PLN02250 lipid phosphate phosphatase
Probab=23.28 E-value=9.4e+02 Score=25.77 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Q 009223 13 ADTPTWAVATVITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALEKIKDEMMLFGVLSLLMGHWIVFVAKICVKSSALS 92 (540)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKiKeELMLLGFISLLLtv~q~~IskICIp~s~~~ 92 (540)
+--|+|++.+++.++-++.+++= ++.|++...++.++ .-+ ..|++++..-..+.|..+-.-=-+
T Consensus 64 ~tVp~~~l~ii~~~iP~~vilv~--------~~~r~~~~~l~~~~-------l~l-l~sv~~t~lit~~lK~~vGRpRPd 127 (314)
T PLN02250 64 NTIPFWAVPLIAILLPFAVILVY--------YFIRRDVYDLHHAI-------LGL-LFSVLITGVITDAIKDAVGRPRPD 127 (314)
T ss_pred CeecHHHHHHHHHHHHHHHHHHH--------HHHHhhHHHHHHHH-------HHH-HHHHHHHHHHHHHHHhhhCCCCCC
Confidence 56699999888776666555541 12232222333222 222 335555555555556655443333
Q ss_pred CceecCCC
Q 009223 93 SRFYPCAS 100 (540)
Q Consensus 93 s~~lPC~~ 100 (540)
.+..|..
T Consensus 128 -fl~rC~P 134 (314)
T PLN02250 128 -FFWRCFP 134 (314)
T ss_pred -hhhhcCc
Confidence 3446754
No 21
>PHA03105 EEV glycoprotein; Provisional
Probab=22.56 E-value=88 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.486 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhcchH
Q 009223 20 VATVITVMIIFGFFVHTCLKHFGKWLEKTKRKS 52 (540)
Q Consensus 20 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kka 52 (540)
+.++|..++++..++=-.-|.+.|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346788888888888888999999999888875
Done!