Query 009223
Match_columns 540
No_of_seqs 159 out of 245
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 56.6 14 0.00048 28.8 4.4 36 14-50 9-44 (54)
2 2k1a_A Integrin alpha-IIB; sin 33.3 37 0.0013 25.1 3.3 35 13-48 6-40 (42)
3 2l8s_A Integrin alpha-1; trans 31.5 19 0.00064 28.2 1.5 44 13-58 5-48 (54)
4 2uwj_E Type III export protein 17.8 70 0.0024 26.2 2.5 33 34-66 8-40 (70)
5 1rh4_A Right-handed coiled coi 17.4 95 0.0033 21.7 2.7 18 47-64 16-33 (35)
6 1zke_A Hypothetical protein HP 14.3 27 0.00093 29.2 -0.8 19 50-68 64-82 (83)
7 1wlq_A Geminin; coiled-coil; 2 11.7 1.8E+02 0.006 24.6 3.4 14 45-58 25-38 (83)
8 3sok_A Fimbrial protein; pilus 11.6 4.1E+02 0.014 23.4 6.1 41 24-64 7-47 (151)
9 2jwa_A Receptor tyrosine-prote 11.4 2E+02 0.0068 21.5 3.2 30 17-51 12-41 (44)
10 4h62_K Mediator of RNA polymer 10.3 1.4E+02 0.0049 21.4 2.0 22 48-69 7-28 (40)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=56.62 E-value=14 Score=28.84 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcc
Q 009223 14 DTPTWAVATVITVMIIFGFFVHTCLKHFGKWLEKTKR 50 (540)
Q Consensus 14 ~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~k 50 (540)
..|.|.+.+-....+++=.++=.++.++| +|||+++
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 68999755444433443355567788887 6666554
No 2
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=33.29 E-value=37 Score=25.13 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=19.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q 009223 13 ADTPTWAVATVITVMIIFGFFVHTCLKHFGKWLEKT 48 (540)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk 48 (540)
+..|.|.+.+-...-+++=.++=.++.++| +|||+
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~ 40 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRN 40 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCC
Confidence 468999654433333333345556777777 44543
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.46 E-value=19 Score=28.16 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=23.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHH
Q 009223 13 ADTPTWAVATVITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALE 58 (540)
Q Consensus 13 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALe 58 (540)
+..|.|.+.+-...-+++=.++=.++-++| +|||++ ++..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~-~~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPL-KKKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCC-SCCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC-cchhhHHh
Confidence 468999644333333333345556777877 566554 44444444
No 4
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=17.79 E-value=70 Score=26.20 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHHHhHHHhhhcchHHHHHHHHHHHHHHH
Q 009223 34 VHTCLKHFGKWLEKTKRKSLLAALEKIKDEMML 66 (540)
Q Consensus 34 ~Er~lH~lgk~Lkkk~kkaL~eALeKiKeELML 66 (540)
+|..++-.+.-..++=+--|+.||.++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666655555566677899999999999986
No 5
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=17.38 E-value=95 Score=21.73 Aligned_cols=18 Identities=44% Similarity=0.636 Sum_probs=13.9
Q ss_pred hhcchHHHHHHHHHHHHH
Q 009223 47 KTKRKSLLAALEKIKDEM 64 (540)
Q Consensus 47 kk~kkaL~eALeKiKeEL 64 (540)
-|-|-..+.||.|||.|+
T Consensus 16 akikaeilaalkkikqei 33 (35)
T 1rh4_A 16 AKIKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344667888999999886
No 6
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=14.31 E-value=27 Score=29.19 Aligned_cols=19 Identities=47% Similarity=0.809 Sum_probs=15.6
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 009223 50 RKSLLAALEKIKDEMMLFG 68 (540)
Q Consensus 50 kkaL~eALeKiKeELMLLG 68 (540)
=|+..+||.|+|.|+...|
T Consensus 64 LKe~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 64 LKELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 4678999999999986544
No 7
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=11.70 E-value=1.8e+02 Score=24.56 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=10.4
Q ss_pred HhhhcchHHHHHHH
Q 009223 45 LEKTKRKSLLAALE 58 (540)
Q Consensus 45 Lkkk~kkaL~eALe 58 (540)
+..+||+||++||+
T Consensus 25 lAE~Rr~AL~eaL~ 38 (83)
T 1wlq_A 25 VAEQRRKALYEALK 38 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677888888884
No 8
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=11.55 E-value=4.1e+02 Score=23.37 Aligned_cols=41 Identities=12% Similarity=0.350 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHHHHHHHH
Q 009223 24 ITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALEKIKDEM 64 (540)
Q Consensus 24 c~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKiKeEL 64 (540)
..|+++|+|+.=-++-.+..+.++.+++.....+..++..+
T Consensus 7 lvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~ 47 (151)
T 3sok_A 7 MIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRI 47 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777888888888877766666666665544
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.43 E-value=2e+02 Score=21.50 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcch
Q 009223 17 TWAVATVITVMIIFGFFVHTCLKHFGKWLEKTKRK 51 (540)
Q Consensus 17 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkkk~kk 51 (540)
|++.|.|..+++++-+.+ -++=|++||+++
T Consensus 12 ~~Ia~~vVGvll~vi~~l-----~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGV-----VFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHH-----HHHhheehhhhh
Confidence 455555555433322221 234577776654
No 10
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=10.27 E-value=1.4e+02 Score=21.38 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=18.2
Q ss_pred hcchHHHHHHHHHHHHHHHHHH
Q 009223 48 TKRKSLLAALEKIKDEMMLFGV 69 (540)
Q Consensus 48 k~kkaL~eALeKiKeELMLLGF 69 (540)
-+||+|-.--||+.|.|=||.-
T Consensus 7 vnkkalgqdtekmeeqldllsa 28 (40)
T 4h62_K 7 VNKKALGQDTEKMEEQLDLLSA 28 (40)
T ss_pred ccHHhhcccHHHHHHHHHHHHH
Confidence 3688999999999999887643
Done!