Query 009223
Match_columns 540
No_of_seqs 159 out of 245
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 21:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 26.1 15 0.0011 26.2 1.9 18 363-380 29-46 (51)
2 d1zkea1 a.30.6.1 (A:1-79) Hypo 11.3 36 0.0026 26.2 1.0 16 50-65 62-77 (79)
3 d1xrda1 f.3.1.1 (A:1-52) Light 10.8 55 0.004 23.6 1.8 15 149-163 13-27 (52)
4 d3b60a2 f.37.1.1 (A:10-328) Mu 10.6 2.1E+02 0.015 23.7 6.1 25 18-42 156-180 (319)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 10.4 2.1E+02 0.015 21.5 5.7 38 24-61 7-44 (158)
6 d1yu8x1 a.14.1.1 (X:42-76) Vil 8.3 37 0.0027 22.6 0.0 12 278-289 3-14 (35)
7 d1unda_ a.14.1.1 (A:) Advillin 8.1 38 0.0028 22.7 0.0 12 278-289 4-15 (36)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 7.6 1.3E+02 0.0096 19.7 2.6 20 15-34 2-23 (34)
9 d1iwga8 f.35.1.1 (A:513-566,A: 7.3 1.8E+02 0.013 25.0 4.4 58 19-76 110-179 (222)
10 d1ep3a_ c.1.4.1 (A:) Dihydroor 7.2 1.5E+02 0.011 26.1 3.8 31 32-62 278-308 (311)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.11 E-value=15 Score=26.23 Aligned_cols=18 Identities=50% Similarity=0.731 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHhhhHHH
Q 009223 363 RLLLHLIQLISFQNALEM 380 (540)
Q Consensus 363 ~llL~LIhfiLFQNAFel 380 (540)
.++|-|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 589999999999999986
No 2
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=11.30 E-value=36 Score=26.24 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHHHHH
Q 009223 50 RKSLLAALEKIKDEMM 65 (540)
Q Consensus 50 kkaL~eALeKiKeELM 65 (540)
=|+..+||.|+|.|+.
T Consensus 62 LK~~IdaLNKiKke~l 77 (79)
T d1zkea1 62 LKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4688999999999974
No 3
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=10.80 E-value=55 Score=23.56 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHHHH
Q 009223 149 SLEQLHRFIFVLGVT 163 (540)
Q Consensus 149 gLHQLHIFIFVLAV~ 163 (540)
.+--+|.|+|+||++
T Consensus 13 ~lva~~~fL~~LAl~ 27 (52)
T d1xrda1 13 ALVGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455689999999975
No 4
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.63 E-value=2.1e+02 Score=23.72 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 009223 18 WAVATVITVMIIFGFFVHTCLKHFG 42 (540)
Q Consensus 18 WaVA~Vc~v~V~iSl~~Er~lH~lg 42 (540)
|.++.++.+.+.+.+++-....+-.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~ 180 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKRF 180 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhHH
Confidence 5667777777776666555444433
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=10.44 E-value=2.1e+02 Score=21.51 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhcchHHHHHHHHHH
Q 009223 24 ITVMIIFGFFVHTCLKHFGKWLEKTKRKSLLAALEKIK 61 (540)
Q Consensus 24 c~v~V~iSl~~Er~lH~lgk~Lkkk~kkaL~eALeKiK 61 (540)
..|+++|+++.==++=.+..+.++.+++.....+.-++
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i~ 44 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQK 44 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777766655554444443
No 6
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.33 E-value=37 Score=22.60 Aligned_cols=12 Identities=25% Similarity=0.839 Sum_probs=9.5
Q ss_pred hhhhccccccch
Q 009223 278 EEEFRDIVGISV 289 (540)
Q Consensus 278 EdDFk~VVGIS~ 289 (540)
++||..|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888875
No 7
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.15 E-value=38 Score=22.66 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.6
Q ss_pred hhhhccccccch
Q 009223 278 EEEFRDIVGISV 289 (540)
Q Consensus 278 EdDFk~VVGIS~ 289 (540)
++||..|.|+|-
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 678888888875
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.61 E-value=1.3e+02 Score=19.68 Aligned_cols=20 Identities=45% Similarity=0.931 Sum_probs=13.5
Q ss_pred CCchhHHHHHHH--HHHHHHHH
Q 009223 15 TPTWAVATVITV--MIIFGFFV 34 (540)
Q Consensus 15 TPTWaVA~Vc~v--~V~iSl~~ 34 (540)
.|-|.||+|.-+ +.++++++
T Consensus 2 iPLWlv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEeeehhhhhhHhheeeee
Confidence 588999998754 44455554
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.33 E-value=1.8e+02 Score=24.99 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHhh--hcchHHHHHHHHHHHHH----------HHHHHHHHHHHh
Q 009223 19 AVATVITVMIIFGFFVHTCLKHFGKWLEK--TKRKSLLAALEKIKDEM----------MLFGVLSLLMGH 76 (540)
Q Consensus 19 aVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk--k~kkaL~eALeKiKeEL----------MLLGFISLLLtv 76 (540)
.+.+.....+++++.+...+|.+..+.+. ++.+...+|..+--+|- +.+||++|++.-
T Consensus 110 ~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~~ 179 (222)
T d1iwga8 110 DVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIST 179 (222)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcc
Confidence 34556677788999999999999988653 33345555554444443 478999888753
No 10
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=7.16 E-value=1.5e+02 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhHHHhhhcchHHHHHHHHHHH
Q 009223 32 FFVHTCLKHFGKWLEKTKRKSLLAALEKIKD 62 (540)
Q Consensus 32 l~~Er~lH~lgk~Lkkk~kkaL~eALeKiKe 62 (540)
.++++++..|.+|+++++=+.+-|...|+|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4688999999999999988999999999986
Done!