Query 009224
Match_columns 540
No_of_seqs 504 out of 4412
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 21:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03143 AhpF_homolog putativ 100.0 1.9E-48 4.1E-53 410.7 47.2 436 93-540 3-454 (555)
2 KOG0404 Thioredoxin reductase 100.0 1.1E-45 2.4E-50 319.7 24.9 311 93-404 7-320 (322)
3 COG0492 TrxB Thioredoxin reduc 100.0 1.5E-43 3.2E-48 340.2 32.6 301 93-405 2-303 (305)
4 TIGR01292 TRX_reduct thioredox 100.0 1.7E-41 3.8E-46 334.2 35.0 298 95-402 1-300 (300)
5 PRK10262 thioredoxin reductase 100.0 2.5E-41 5.4E-46 335.2 33.8 306 92-405 4-317 (321)
6 PRK12831 putative oxidoreducta 100.0 3.6E-42 7.8E-47 354.8 26.8 342 41-405 84-463 (464)
7 COG1249 Lpd Pyruvate/2-oxoglut 100.0 6.8E-42 1.5E-46 344.5 27.6 324 93-432 3-369 (454)
8 TIGR01316 gltA glutamate synth 100.0 5.4E-41 1.2E-45 345.7 26.3 337 40-402 71-449 (449)
9 PRK15317 alkyl hydroperoxide r 100.0 2.1E-39 4.6E-44 340.2 35.5 305 92-406 209-515 (517)
10 TIGR03140 AhpF alkyl hydropero 100.0 1.6E-39 3.4E-44 340.6 34.1 302 92-404 210-514 (515)
11 PRK12779 putative bifunctional 100.0 3E-39 6.5E-44 354.5 28.9 338 41-404 244-628 (944)
12 PRK12778 putative bifunctional 100.0 3E-39 6.6E-44 352.9 26.9 340 41-405 373-752 (752)
13 PRK06370 mercuric reductase; V 100.0 3.2E-38 6.9E-43 328.1 33.0 325 93-438 4-375 (463)
14 TIGR01424 gluta_reduc_2 glutat 100.0 2.3E-38 4.9E-43 327.2 31.5 314 94-431 2-359 (446)
15 TIGR01421 gluta_reduc_1 glutat 100.0 8.2E-38 1.8E-42 322.5 33.7 318 94-431 2-362 (450)
16 PRK06116 glutathione reductase 100.0 6.4E-38 1.4E-42 324.9 32.4 317 94-431 4-362 (450)
17 PRK12775 putative trifunctiona 100.0 1E-38 2.2E-43 353.4 27.6 343 41-406 375-758 (1006)
18 PRK11749 dihydropyrimidine deh 100.0 2E-38 4.3E-43 328.6 26.8 340 41-406 84-455 (457)
19 PLN02546 glutathione reductase 100.0 4.8E-38 1E-42 328.1 28.9 319 92-431 77-446 (558)
20 TIGR02053 MerA mercuric reduct 100.0 7.4E-38 1.6E-42 325.6 29.9 328 95-437 1-369 (463)
21 PLN02507 glutathione reductase 100.0 4.1E-38 8.8E-43 327.6 26.4 320 92-431 23-396 (499)
22 PRK09853 putative selenate red 100.0 6.6E-38 1.4E-42 337.7 28.8 336 40-403 482-842 (1019)
23 PRK06416 dihydrolipoamide dehy 100.0 2E-37 4.3E-42 322.5 30.9 330 93-438 3-374 (462)
24 PRK12814 putative NADPH-depend 100.0 9.1E-38 2E-42 334.5 27.2 345 40-408 137-506 (652)
25 PRK06467 dihydrolipoamide dehy 100.0 5E-37 1.1E-41 318.5 31.7 325 93-436 3-375 (471)
26 PRK08010 pyridine nucleotide-d 100.0 4.7E-37 1E-41 317.6 31.4 324 94-438 3-359 (441)
27 PRK12810 gltD glutamate syntha 100.0 2E-37 4.4E-42 321.4 28.1 339 41-407 88-469 (471)
28 PRK05249 soluble pyridine nucl 100.0 2.2E-37 4.7E-42 322.4 27.7 317 93-430 4-366 (461)
29 COG3634 AhpF Alkyl hydroperoxi 100.0 1.1E-37 2.3E-42 287.1 21.9 303 91-404 208-516 (520)
30 PRK14694 putative mercuric red 100.0 6.5E-37 1.4E-41 318.3 30.5 329 92-438 4-375 (468)
31 TIGR03315 Se_ygfK putative sel 100.0 3.5E-37 7.5E-42 334.0 28.0 336 40-403 480-840 (1012)
32 PTZ00058 glutathione reductase 100.0 6.7E-37 1.4E-41 319.3 29.1 323 93-431 47-465 (561)
33 TIGR01318 gltD_gamma_fam gluta 100.0 7E-37 1.5E-41 316.1 29.0 338 40-403 83-466 (467)
34 TIGR01423 trypano_reduc trypan 100.0 4.9E-37 1.1E-41 317.4 27.1 321 93-432 2-385 (486)
35 KOG0405 Pyridine nucleotide-di 100.0 2.9E-36 6.3E-41 277.8 28.7 321 92-432 18-385 (478)
36 COG1252 Ndh NADH dehydrogenase 100.0 3.5E-37 7.7E-42 302.1 23.0 294 94-407 3-336 (405)
37 PRK12769 putative oxidoreducta 100.0 1.1E-36 2.4E-41 327.8 28.9 340 41-405 270-654 (654)
38 PRK07251 pyridine nucleotide-d 100.0 6.2E-36 1.3E-40 309.0 32.9 323 94-436 3-356 (438)
39 PRK14727 putative mercuric red 100.0 3.2E-36 6.8E-41 313.5 30.1 321 92-434 14-382 (479)
40 PRK06292 dihydrolipoamide dehy 100.0 4.5E-36 9.7E-41 312.4 31.1 323 94-437 3-371 (460)
41 PRK13512 coenzyme A disulfide 100.0 3.4E-37 7.4E-42 317.4 21.8 314 94-430 1-345 (438)
42 PRK06115 dihydrolipoamide dehy 100.0 3.2E-36 6.9E-41 312.4 28.9 330 94-437 3-377 (466)
43 TIGR01438 TGR thioredoxin and 100.0 2.8E-36 6.1E-41 312.7 27.2 322 94-431 2-377 (484)
44 PRK07845 flavoprotein disulfid 100.0 1.3E-35 2.8E-40 307.8 32.1 321 94-430 1-369 (466)
45 PRK13748 putative mercuric red 100.0 6.6E-36 1.4E-40 318.7 29.2 319 93-430 97-459 (561)
46 PRK07846 mycothione reductase; 100.0 1.4E-35 3E-40 305.7 30.1 321 95-437 2-366 (451)
47 PRK06327 dihydrolipoamide dehy 100.0 1.5E-35 3.2E-40 308.4 30.3 333 93-437 3-386 (475)
48 PTZ00153 lipoamide dehydrogena 100.0 5.1E-36 1.1E-40 316.3 26.3 328 92-431 114-540 (659)
49 PRK07818 dihydrolipoamide dehy 100.0 1.4E-35 3.1E-40 308.3 29.0 330 94-438 4-378 (466)
50 TIGR01317 GOGAT_sm_gam glutama 100.0 1.9E-35 4.1E-40 306.6 29.5 341 41-407 88-483 (485)
51 PRK05976 dihydrolipoamide dehy 100.0 5.9E-35 1.3E-39 304.2 33.2 321 93-430 3-375 (472)
52 PTZ00052 thioredoxin reductase 100.0 1.3E-35 2.9E-40 309.2 26.7 319 94-431 5-374 (499)
53 TIGR01350 lipoamide_DH dihydro 100.0 8.9E-35 1.9E-39 303.0 31.8 323 95-437 2-372 (461)
54 PRK12809 putative oxidoreducta 100.0 4E-35 8.6E-40 314.3 29.7 341 41-406 253-638 (639)
55 PTZ00318 NADH dehydrogenase-li 100.0 7.4E-36 1.6E-40 306.2 23.1 301 92-412 8-357 (424)
56 PRK06912 acoL dihydrolipoamide 100.0 8.8E-35 1.9E-39 301.5 30.1 318 96-431 2-362 (458)
57 PRK09564 coenzyme A disulfide 100.0 9.6E-36 2.1E-40 308.9 21.5 314 96-430 2-349 (444)
58 KOG1335 Dihydrolipoamide dehyd 100.0 2.2E-35 4.7E-40 275.5 20.5 360 93-464 38-456 (506)
59 TIGR03452 mycothione_red mycot 100.0 2E-34 4.3E-39 297.5 29.4 321 94-436 2-368 (452)
60 PRK12771 putative glutamate sy 100.0 3.6E-34 7.8E-39 303.8 26.6 342 41-408 83-449 (564)
61 PRK13984 putative oxidoreducta 100.0 1.7E-34 3.7E-39 309.3 24.1 337 41-405 227-604 (604)
62 PRK14989 nitrite reductase sub 100.0 4.3E-34 9.3E-39 311.1 25.3 286 95-399 4-308 (847)
63 PRK12770 putative glutamate sy 100.0 2.2E-33 4.7E-38 281.4 28.1 296 93-404 17-351 (352)
64 TIGR03169 Nterm_to_SelD pyridi 100.0 1.4E-33 2.9E-38 285.2 22.0 289 96-407 1-315 (364)
65 PRK04965 NADH:flavorubredoxin 100.0 4E-33 8.8E-38 282.5 25.5 284 95-400 3-301 (377)
66 PRK09754 phenylpropionate diox 100.0 1.4E-33 3.1E-38 287.3 21.3 284 94-400 3-308 (396)
67 TIGR02374 nitri_red_nirB nitri 100.0 9.8E-33 2.1E-37 301.3 23.6 281 97-399 1-299 (785)
68 PLN02852 ferredoxin-NADP+ redu 100.0 2.7E-31 6E-36 270.7 26.1 292 92-405 24-424 (491)
69 KOG1336 Monodehydroascorbate/f 100.0 1.4E-31 3.1E-36 259.6 19.5 288 93-400 73-382 (478)
70 KOG4716 Thioredoxin reductase 100.0 1.1E-30 2.4E-35 240.0 19.5 330 92-432 17-399 (503)
71 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4.9E-30 1.1E-34 264.5 18.0 299 108-430 1-336 (427)
72 KOG2495 NADH-dehydrogenase (ub 100.0 3.6E-29 7.8E-34 238.1 20.8 302 90-407 51-401 (491)
73 COG0493 GltD NADPH-dependent g 100.0 9.5E-30 2.1E-34 256.8 16.8 343 41-404 66-453 (457)
74 TIGR01372 soxA sarcosine oxida 100.0 3.8E-28 8.3E-33 271.3 29.5 285 93-404 162-473 (985)
75 PLN02172 flavin-containing mon 100.0 6.9E-28 1.5E-32 247.1 27.1 281 93-405 9-351 (461)
76 COG1251 NirB NAD(P)H-nitrite r 100.0 5.2E-29 1.1E-33 252.5 15.7 351 94-463 3-370 (793)
77 PRK06567 putative bifunctional 100.0 1.7E-27 3.7E-32 253.6 22.5 320 40-407 313-774 (1028)
78 KOG0399 Glutamate synthase [Am 99.9 2.2E-26 4.8E-31 238.3 21.8 336 42-406 1731-2123(2142)
79 PF00743 FMO-like: Flavin-bind 99.9 7E-24 1.5E-28 220.3 22.2 175 95-274 2-217 (531)
80 KOG0910 Thioredoxin-like prote 99.9 1.5E-22 3.2E-27 167.4 11.9 105 436-540 44-148 (150)
81 COG0446 HcaD Uncharacterized N 99.9 1.9E-21 4.2E-26 200.5 20.3 282 97-400 1-309 (415)
82 PF13738 Pyr_redox_3: Pyridine 99.9 2.8E-21 6E-26 178.8 16.3 169 98-274 1-201 (203)
83 PTZ00188 adrenodoxin reductase 99.9 1.1E-19 2.3E-24 182.4 26.8 289 93-404 38-441 (506)
84 PF13434 K_oxygenase: L-lysine 99.9 1.1E-20 2.4E-25 186.3 18.2 244 94-338 2-340 (341)
85 COG2072 TrkA Predicted flavopr 99.9 2.3E-20 5E-25 190.9 20.2 180 91-275 5-210 (443)
86 KOG1399 Flavin-containing mono 99.9 4.6E-20 1E-24 185.6 21.8 233 93-346 5-276 (448)
87 KOG1346 Programmed cell death 99.8 5.9E-21 1.3E-25 180.6 10.6 321 93-428 177-549 (659)
88 COG1148 HdrA Heterodisulfide r 99.8 6.7E-19 1.4E-23 170.4 23.5 305 94-410 124-552 (622)
89 cd02954 DIM1 Dim1 family; Dim1 99.8 1.6E-19 3.6E-24 145.5 14.3 96 443-538 3-109 (114)
90 PHA02278 thioredoxin-like prot 99.8 1.2E-19 2.7E-24 145.7 13.3 95 440-535 2-100 (103)
91 cd03065 PDI_b_Calsequestrin_N 99.8 5.9E-19 1.3E-23 144.9 13.2 99 441-540 15-119 (120)
92 cd03006 PDI_a_EFP1_N PDIa fami 99.8 4.6E-19 9.9E-24 144.8 11.6 96 441-536 15-113 (113)
93 KOG1800 Ferredoxin/adrenodoxin 99.8 3.5E-18 7.5E-23 160.8 18.9 288 94-404 20-408 (468)
94 PF00085 Thioredoxin: Thioredo 99.8 1.2E-18 2.5E-23 142.3 13.4 99 441-539 5-103 (103)
95 COG3486 IucD Lysine/ornithine 99.8 3.8E-17 8.3E-22 156.3 24.7 280 92-378 3-387 (436)
96 PF07992 Pyr_redox_2: Pyridine 99.8 7E-20 1.5E-24 169.1 5.6 182 96-379 1-199 (201)
97 cd02956 ybbN ybbN protein fami 99.8 1.3E-18 2.9E-23 139.8 12.4 94 444-537 2-96 (96)
98 KOG0907 Thioredoxin [Posttrans 99.8 2.5E-18 5.3E-23 137.9 12.7 91 447-539 15-105 (106)
99 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.5E-18 3.2E-23 141.8 11.5 96 441-536 7-104 (104)
100 cd02948 TRX_NDPK TRX domain, T 99.8 6.9E-18 1.5E-22 136.9 14.1 99 438-539 3-102 (102)
101 cd02985 TRX_CDSP32 TRX family, 99.8 7E-18 1.5E-22 137.0 14.0 95 442-538 3-101 (103)
102 cd02963 TRX_DnaJ TRX domain, D 99.8 3.5E-18 7.7E-23 140.7 12.4 99 441-539 10-111 (111)
103 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.5E-18 5.4E-23 139.5 11.3 93 442-535 8-100 (101)
104 KOG3851 Sulfide:quinone oxidor 99.8 3E-18 6.6E-23 157.3 12.9 305 92-412 37-370 (446)
105 PLN00410 U5 snRNP protein, DIM 99.8 4.9E-18 1.1E-22 142.5 13.1 101 439-539 8-119 (142)
106 PRK09381 trxA thioredoxin; Pro 99.8 6.7E-18 1.4E-22 139.2 13.6 99 442-540 10-108 (109)
107 COG3118 Thioredoxin domain-con 99.8 2.1E-18 4.5E-23 158.4 11.4 100 441-540 29-130 (304)
108 cd02965 HyaE HyaE family; HyaE 99.8 9.8E-18 2.1E-22 134.1 11.8 92 441-533 16-109 (111)
109 PRK10996 thioredoxin 2; Provis 99.7 2.4E-17 5.2E-22 141.3 14.2 99 441-540 41-139 (139)
110 cd02999 PDI_a_ERp44_like PDIa 99.7 1.2E-17 2.6E-22 134.5 10.9 85 450-536 15-100 (100)
111 cd02949 TRX_NTR TRX domain, no 99.7 3.7E-17 8E-22 131.4 13.3 95 443-537 3-97 (97)
112 TIGR01068 thioredoxin thioredo 99.7 6.2E-17 1.3E-21 131.5 13.5 99 442-540 3-101 (101)
113 cd02996 PDI_a_ERp44 PDIa famil 99.7 3.6E-17 7.8E-22 134.5 11.5 94 442-536 8-108 (108)
114 cd02986 DLP Dim1 family, Dim1- 99.7 1.3E-16 2.9E-21 127.2 13.4 95 444-538 4-109 (114)
115 cd02989 Phd_like_TxnDC9 Phosdu 99.7 1.9E-16 4E-21 130.4 13.8 88 438-527 8-95 (113)
116 cd02994 PDI_a_TMX PDIa family, 99.7 1.1E-16 2.3E-21 130.1 11.9 93 442-538 8-101 (101)
117 cd03002 PDI_a_MPD1_like PDI fa 99.7 8E-17 1.7E-21 132.9 11.4 96 442-537 7-109 (109)
118 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.1E-16 2.4E-21 130.3 11.8 93 442-536 7-102 (102)
119 KOG2755 Oxidoreductase [Genera 99.7 1.2E-16 2.6E-21 143.0 12.4 252 96-379 1-322 (334)
120 PTZ00443 Thioredoxin domain-co 99.7 1.8E-16 4E-21 145.0 13.1 99 441-539 36-138 (224)
121 cd02984 TRX_PICOT TRX domain, 99.7 2.9E-16 6.3E-21 126.5 12.6 94 442-536 2-96 (97)
122 cd03001 PDI_a_P5 PDIa family, 99.7 2.8E-16 6E-21 128.2 12.3 96 441-536 6-102 (103)
123 cd02962 TMX2 TMX2 family; comp 99.7 3.9E-16 8.5E-21 134.1 13.3 95 442-536 35-148 (152)
124 cd02957 Phd_like Phosducin (Ph 99.7 3.9E-16 8.4E-21 129.2 12.8 84 442-527 11-96 (113)
125 cd02950 TxlA TRX-like protein 99.7 3.4E-16 7.3E-21 134.5 12.7 92 449-540 16-110 (142)
126 TIGR01126 pdi_dom protein disu 99.7 3.5E-16 7.7E-21 127.3 11.9 98 442-540 3-102 (102)
127 cd03000 PDI_a_TMX3 PDIa family 99.7 6.2E-16 1.3E-20 126.1 11.9 94 443-539 7-103 (104)
128 cd02997 PDI_a_PDIR PDIa family 99.7 7E-16 1.5E-20 126.0 12.2 94 442-536 7-104 (104)
129 cd02953 DsbDgamma DsbD gamma f 99.7 3.9E-16 8.6E-21 127.3 9.6 92 445-537 4-104 (104)
130 cd02975 PfPDO_like_N Pyrococcu 99.7 7.9E-16 1.7E-20 126.8 10.8 89 451-540 20-110 (113)
131 cd02987 Phd_like_Phd Phosducin 99.7 2.2E-15 4.8E-20 133.7 14.1 98 439-538 67-173 (175)
132 PTZ00051 thioredoxin; Provisio 99.6 2.9E-15 6.3E-20 120.9 12.7 92 439-533 5-96 (98)
133 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.9E-15 4.1E-20 123.5 10.4 94 442-536 7-104 (104)
134 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.7E-15 3.7E-20 124.0 10.0 95 442-536 7-105 (105)
135 PRK05329 anaerobic glycerol-3- 99.6 1.6E-14 3.4E-19 146.0 18.5 155 243-402 218-420 (422)
136 TIGR01295 PedC_BrcD bacterioci 99.6 7.6E-15 1.6E-19 122.2 12.7 94 441-537 12-121 (122)
137 cd02993 PDI_a_APS_reductase PD 99.6 5.7E-15 1.2E-19 121.3 11.4 95 442-536 8-109 (109)
138 cd02961 PDI_a_family Protein D 99.6 7.7E-15 1.7E-19 118.9 10.5 94 442-536 5-101 (101)
139 KOG0908 Thioredoxin-like prote 99.6 5.5E-15 1.2E-19 131.0 10.1 100 439-540 6-106 (288)
140 cd02951 SoxW SoxW family; SoxW 99.6 1.7E-14 3.6E-19 122.0 11.9 91 449-539 9-118 (125)
141 cd02947 TRX_family TRX family; 99.6 5.3E-14 1.1E-18 111.9 12.0 91 445-537 3-93 (93)
142 TIGR00411 redox_disulf_1 small 99.5 9E-14 2E-18 108.0 11.4 81 456-540 2-82 (82)
143 cd02988 Phd_like_VIAF Phosduci 99.5 1.6E-13 3.4E-18 123.4 12.6 93 442-538 89-190 (192)
144 PTZ00062 glutaredoxin; Provisi 99.5 2E-13 4.3E-18 122.9 12.1 89 441-539 5-93 (204)
145 cd02992 PDI_a_QSOX PDIa family 99.5 1.2E-13 2.6E-18 114.1 9.4 79 441-519 7-90 (114)
146 TIGR00424 APS_reduc 5'-adenyly 99.5 2.5E-13 5.3E-18 136.9 12.7 99 441-539 357-462 (463)
147 cd02952 TRP14_like Human TRX-r 99.5 2.1E-13 4.5E-18 111.7 10.0 94 440-536 7-118 (119)
148 PLN02309 5'-adenylylsulfate re 99.5 3.3E-13 7.1E-18 136.0 13.1 99 441-539 351-456 (457)
149 cd02982 PDI_b'_family Protein 99.5 2.9E-13 6.3E-18 110.2 10.0 88 453-540 12-103 (103)
150 cd03007 PDI_a_ERp29_N PDIa fam 99.5 2.3E-13 5E-18 110.3 9.1 94 441-539 7-115 (116)
151 COG2081 Predicted flavoprotein 99.5 7.4E-13 1.6E-17 127.6 13.6 115 93-207 2-165 (408)
152 KOG0190 Protein disulfide isom 99.5 2.5E-13 5.4E-18 135.7 10.5 96 443-539 33-131 (493)
153 KOG0190 Protein disulfide isom 99.4 1.3E-13 2.9E-18 137.6 7.6 114 424-539 355-472 (493)
154 KOG0912 Thiol-disulfide isomer 99.4 3.7E-13 8E-18 122.8 7.4 95 445-540 6-106 (375)
155 PTZ00102 disulphide isomerase; 99.4 9.5E-13 2.1E-17 138.2 11.4 100 441-540 363-465 (477)
156 TIGR01130 ER_PDI_fam protein d 99.4 1.6E-12 3.5E-17 136.1 12.9 98 441-539 7-108 (462)
157 COG4529 Uncharacterized protei 99.4 2.2E-10 4.8E-15 113.5 26.7 177 94-273 1-231 (474)
158 PTZ00102 disulphide isomerase; 99.4 2.3E-12 5E-17 135.3 13.1 96 442-539 39-137 (477)
159 TIGR02187 GlrX_arch Glutaredox 99.4 1.8E-12 3.9E-17 120.2 10.6 86 454-539 20-110 (215)
160 TIGR00412 redox_disulf_2 small 99.4 2.3E-12 4.9E-17 97.8 9.1 72 458-536 3-75 (76)
161 cd02959 ERp19 Endoplasmic reti 99.4 9.4E-13 2E-17 109.0 6.7 92 446-537 12-110 (117)
162 PHA02125 thioredoxin-like prot 99.4 5.6E-12 1.2E-16 95.6 9.7 71 457-536 2-73 (75)
163 PF03486 HI0933_like: HI0933-l 99.3 9.5E-12 2.1E-16 125.5 13.0 115 95-209 1-166 (409)
164 TIGR02187 GlrX_arch Glutaredox 99.3 1.5E-11 3.2E-16 114.1 12.8 86 449-538 128-214 (215)
165 cd02955 SSP411 TRX domain, SSP 99.3 1.3E-11 2.8E-16 102.4 10.9 94 446-539 8-118 (124)
166 PF13098 Thioredoxin_2: Thiore 99.3 3.5E-12 7.5E-17 105.6 7.5 86 451-536 3-112 (112)
167 TIGR02738 TrbB type-F conjugat 99.3 1.5E-11 3.3E-16 106.2 11.2 86 453-540 50-153 (153)
168 KOG4277 Uncharacterized conser 99.3 3.1E-12 6.7E-17 116.3 7.0 87 451-538 41-130 (468)
169 PRK09897 hypothetical protein; 99.3 2.3E-10 4.9E-15 119.1 20.6 160 94-262 1-213 (534)
170 PRK14018 trifunctional thiored 99.2 4.9E-11 1.1E-15 122.0 12.4 89 450-538 53-171 (521)
171 PRK00293 dipZ thiol:disulfide 99.2 4.2E-11 9.1E-16 126.4 12.2 100 439-539 457-569 (571)
172 TIGR01130 ER_PDI_fam protein d 99.2 2.8E-11 6.1E-16 126.7 10.8 97 441-539 352-453 (462)
173 cd03026 AhpF_NTD_C TRX-GRX-lik 99.2 1.1E-10 2.3E-15 91.2 11.2 76 453-533 12-87 (89)
174 PRK15412 thiol:disulfide inter 99.2 1E-10 2.2E-15 105.8 11.4 87 451-540 66-176 (185)
175 PRK11509 hydrogenase-1 operon 99.2 2.3E-10 5E-15 94.6 12.2 95 445-540 27-124 (132)
176 TIGR00385 dsbE periplasmic pro 99.2 9.2E-11 2E-15 104.9 10.7 87 451-540 61-171 (173)
177 TIGR03143 AhpF_homolog putativ 99.2 1.3E-08 2.8E-13 108.3 28.3 85 447-536 469-554 (555)
178 cd03010 TlpA_like_DsbE TlpA-li 99.2 9.9E-11 2.1E-15 99.2 9.9 79 452-532 24-126 (127)
179 TIGR02740 TraF-like TraF-like 99.2 2.5E-10 5.5E-15 108.7 13.6 87 451-539 164-263 (271)
180 cd02973 TRX_GRX_like Thioredox 99.2 1.2E-10 2.6E-15 86.4 9.0 62 456-520 2-63 (67)
181 PLN02697 lycopene epsilon cycl 99.2 3.9E-09 8.4E-14 110.0 23.4 118 92-209 106-248 (529)
182 cd02958 UAS UAS family; UAS is 99.2 2.7E-10 5.7E-15 94.4 11.6 96 444-539 8-110 (114)
183 PRK03147 thiol-disulfide oxido 99.2 2.5E-10 5.4E-15 102.5 12.0 88 452-539 60-171 (173)
184 cd03008 TryX_like_RdCVF Trypar 99.2 1.8E-10 3.8E-15 98.3 9.8 71 452-522 24-128 (146)
185 PLN02463 lycopene beta cyclase 99.1 2E-09 4.3E-14 110.4 16.2 121 91-211 25-171 (447)
186 PF00070 Pyr_redox: Pyridine n 99.1 4.4E-10 9.5E-15 86.5 8.5 74 242-317 1-79 (80)
187 KOG0191 Thioredoxin/protein di 99.1 3.4E-10 7.3E-15 114.7 9.9 97 443-539 37-133 (383)
188 PRK08275 putative oxidoreducta 99.1 4.4E-09 9.6E-14 111.8 18.5 52 353-405 356-407 (554)
189 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 8E-10 1.7E-14 93.1 10.4 83 451-535 18-121 (123)
190 PF13905 Thioredoxin_8: Thiore 99.1 7.2E-10 1.6E-14 88.6 9.4 67 453-519 1-95 (95)
191 cd02964 TryX_like_family Trypa 99.1 7E-10 1.5E-14 94.6 9.7 71 452-522 16-115 (132)
192 PRK13728 conjugal transfer pro 99.1 2.6E-09 5.7E-14 93.8 13.4 82 457-540 73-171 (181)
193 cd03009 TryX_like_TryX_NRX Try 99.1 8.1E-10 1.7E-14 94.1 9.6 71 452-522 17-115 (131)
194 PRK06847 hypothetical protein; 99.0 4.4E-09 9.6E-14 106.9 15.7 118 93-210 3-164 (375)
195 TIGR02032 GG-red-SF geranylger 99.0 2.7E-09 5.9E-14 104.6 13.3 115 95-209 1-148 (295)
196 PRK07804 L-aspartate oxidase; 99.0 6.1E-08 1.3E-12 102.7 24.1 117 93-209 15-210 (541)
197 PRK04176 ribulose-1,5-biphosph 99.0 2.7E-09 5.9E-14 101.4 12.5 115 94-208 25-172 (257)
198 PRK10015 oxidoreductase; Provi 99.0 3.3E-09 7.1E-14 109.2 13.9 117 93-209 4-164 (429)
199 PLN02919 haloacid dehalogenase 99.0 1.3E-09 2.8E-14 123.0 11.7 88 452-539 419-535 (1057)
200 cd02960 AGR Anterior Gradient 99.0 1.1E-09 2.4E-14 90.6 8.0 84 442-527 12-100 (130)
201 COG0029 NadB Aspartate oxidase 99.0 3.5E-08 7.6E-13 97.9 19.4 112 96-208 9-195 (518)
202 TIGR00136 gidA glucose-inhibit 99.0 8.6E-08 1.9E-12 99.9 22.7 115 95-209 1-154 (617)
203 PRK06854 adenylylsulfate reduc 99.0 1.6E-08 3.4E-13 108.4 17.9 44 360-404 389-433 (608)
204 PRK13800 putative oxidoreducta 99.0 1.1E-08 2.5E-13 114.5 17.2 51 353-404 361-411 (897)
205 PRK10157 putative oxidoreducta 99.0 4E-09 8.8E-14 108.6 12.6 117 93-209 4-164 (428)
206 PRK06452 sdhA succinate dehydr 99.0 1.8E-08 3.9E-13 107.2 17.6 51 353-404 346-405 (566)
207 TIGR01812 sdhA_frdA_Gneg succi 99.0 1E-08 2.2E-13 109.7 15.8 52 352-404 341-404 (566)
208 TIGR00292 thiazole biosynthesi 99.0 7.7E-09 1.7E-13 98.0 13.1 115 94-208 21-169 (254)
209 TIGR00551 nadB L-aspartate oxi 99.0 2.2E-07 4.8E-12 97.4 25.2 115 95-210 3-190 (488)
210 smart00594 UAS UAS domain. 99.0 8.5E-09 1.8E-13 86.2 11.6 96 442-537 16-122 (122)
211 COG0644 FixC Dehydrogenases (f 99.0 5.9E-09 1.3E-13 106.5 12.6 117 93-209 2-152 (396)
212 PRK08071 L-aspartate oxidase; 99.0 7.6E-09 1.7E-13 108.7 13.7 34 94-128 3-36 (510)
213 TIGR02023 BchP-ChlP geranylger 99.0 1.4E-08 3E-13 103.6 15.2 115 95-209 1-155 (388)
214 cd02966 TlpA_like_family TlpA- 98.9 4.8E-09 1E-13 86.8 9.6 73 453-525 19-116 (116)
215 PRK06069 sdhA succinate dehydr 98.9 1.5E-08 3.3E-13 108.3 15.8 51 353-404 352-416 (577)
216 TIGR01790 carotene-cycl lycope 98.9 1.3E-08 2.9E-13 103.9 14.2 114 96-209 1-141 (388)
217 PRK05945 sdhA succinate dehydr 98.9 1.5E-08 3.3E-13 108.2 14.8 35 94-128 3-39 (575)
218 PRK09231 fumarate reductase fl 98.9 3.4E-07 7.4E-12 97.8 24.9 52 352-404 357-416 (582)
219 cd03012 TlpA_like_DipZ_like Tl 98.9 9.3E-09 2E-13 86.9 10.1 75 452-526 22-125 (126)
220 PLN02399 phospholipid hydroper 98.9 1.6E-08 3.4E-13 93.7 11.9 89 452-540 98-234 (236)
221 PLN00093 geranylgeranyl diphos 98.9 2.5E-08 5.4E-13 102.9 14.7 119 91-209 36-199 (450)
222 cd02967 mauD Methylamine utili 98.9 9.7E-09 2.1E-13 85.1 9.4 71 452-522 20-111 (114)
223 PRK08773 2-octaprenyl-3-methyl 98.9 2E-08 4.3E-13 102.7 13.8 118 93-210 5-170 (392)
224 PRK06834 hypothetical protein; 98.9 2.9E-08 6.3E-13 103.8 15.1 118 94-211 3-158 (488)
225 COG1635 THI4 Ribulose 1,5-bisp 98.9 2E-08 4.4E-13 88.8 11.4 113 95-207 31-176 (262)
226 PRK12842 putative succinate de 98.9 1.8E-09 3.9E-14 115.4 5.9 99 239-340 156-276 (574)
227 PRK07573 sdhA succinate dehydr 98.9 7.3E-08 1.6E-12 103.8 18.2 35 93-127 34-68 (640)
228 KOG0191 Thioredoxin/protein di 98.9 5.7E-09 1.2E-13 105.8 9.1 98 442-539 151-251 (383)
229 TIGR01811 sdhA_Bsu succinate d 98.9 9.5E-07 2.1E-11 94.6 26.3 51 353-404 370-427 (603)
230 PRK07608 ubiquinone biosynthes 98.9 2.7E-08 5.8E-13 101.7 13.6 116 94-209 5-167 (388)
231 PF08534 Redoxin: Redoxin; In 98.9 1.5E-08 3.2E-13 88.2 10.0 78 451-528 26-136 (146)
232 TIGR02028 ChlP geranylgeranyl 98.9 3.3E-08 7.2E-13 100.9 14.2 116 95-210 1-161 (398)
233 PRK06184 hypothetical protein; 98.9 3.9E-08 8.5E-13 103.8 14.9 116 94-209 3-168 (502)
234 KOG1731 FAD-dependent sulfhydr 98.8 1.2E-09 2.7E-14 108.9 3.0 98 441-538 45-151 (606)
235 PRK08020 ubiF 2-octaprenyl-3-m 98.8 3E-08 6.6E-13 101.4 13.2 118 93-210 4-170 (391)
236 PRK09077 L-aspartate oxidase; 98.8 7.4E-07 1.6E-11 94.5 24.1 50 353-403 353-410 (536)
237 PRK07190 hypothetical protein; 98.8 5E-08 1.1E-12 101.9 15.0 117 93-209 4-165 (487)
238 TIGR00275 flavoprotein, HI0933 98.8 2.5E-08 5.4E-13 101.7 12.5 112 98-209 1-160 (400)
239 PRK05714 2-octaprenyl-3-methyl 98.8 2.9E-08 6.2E-13 102.0 13.0 116 94-209 2-168 (405)
240 PRK07333 2-octaprenyl-6-methox 98.8 3.2E-08 7E-13 101.6 13.2 117 94-210 1-168 (403)
241 COG1249 Lpd Pyruvate/2-oxoglut 98.8 5.4E-08 1.2E-12 99.2 14.4 135 60-214 137-277 (454)
242 PRK08626 fumarate reductase fl 98.8 4.4E-08 9.6E-13 105.6 14.6 52 353-405 372-432 (657)
243 PF01266 DAO: FAD dependent ox 98.8 3.2E-08 6.9E-13 99.7 12.5 55 154-208 146-202 (358)
244 PF01134 GIDA: Glucose inhibit 98.8 2.3E-08 5E-13 98.9 10.9 112 96-207 1-150 (392)
245 PTZ00056 glutathione peroxidas 98.8 2.1E-08 4.5E-13 91.4 9.9 89 452-540 38-178 (199)
246 PRK07251 pyridine nucleotide-d 98.8 1.1E-07 2.4E-12 98.6 16.2 99 94-212 157-256 (438)
247 PF05834 Lycopene_cycl: Lycope 98.8 4.9E-08 1.1E-12 98.8 12.9 115 96-210 1-143 (374)
248 PRK07364 2-octaprenyl-6-methox 98.8 6.2E-08 1.3E-12 100.0 13.9 117 93-209 17-181 (415)
249 TIGR02661 MauD methylamine deh 98.8 4.1E-08 9E-13 89.0 11.1 86 452-538 73-177 (189)
250 PRK05192 tRNA uridine 5-carbox 98.8 3.7E-08 8.1E-13 102.8 12.0 116 93-208 3-156 (618)
251 PF13899 Thioredoxin_7: Thiore 98.8 1.4E-08 3.1E-13 78.4 6.9 73 442-515 6-81 (82)
252 PF13454 NAD_binding_9: FAD-NA 98.8 1.1E-07 2.5E-12 83.3 13.3 108 98-207 1-155 (156)
253 PRK07512 L-aspartate oxidase; 98.8 8.6E-08 1.9E-12 100.9 14.6 51 353-404 341-399 (513)
254 PF01946 Thi4: Thi4 family; PD 98.8 4.4E-08 9.5E-13 87.4 10.2 116 93-208 16-164 (230)
255 PRK08244 hypothetical protein; 98.8 1.3E-07 2.9E-12 99.6 15.9 115 95-209 3-159 (493)
256 PRK13977 myosin-cross-reactive 98.8 2.3E-08 5E-13 103.3 9.7 92 250-341 192-295 (576)
257 PF01494 FAD_binding_3: FAD bi 98.8 3.7E-08 8.1E-13 99.2 11.2 115 95-209 2-172 (356)
258 TIGR03378 glycerol3P_GlpB glyc 98.8 9.7E-07 2.1E-11 88.6 20.8 112 282-398 269-418 (419)
259 PLN02412 probable glutathione 98.8 6.2E-08 1.3E-12 85.9 11.0 89 452-540 28-164 (167)
260 PRK08205 sdhA succinate dehydr 98.8 6.9E-08 1.5E-12 103.3 13.4 34 94-128 5-38 (583)
261 PRK08013 oxidoreductase; Provi 98.8 7.5E-08 1.6E-12 98.7 13.1 116 94-209 3-168 (400)
262 TIGR02061 aprA adenosine phosp 98.8 4.1E-07 8.9E-12 96.9 18.9 42 364-405 403-445 (614)
263 PRK08401 L-aspartate oxidase; 98.8 1.3E-07 2.8E-12 98.6 14.5 117 94-210 1-176 (466)
264 PF00070 Pyr_redox: Pyridine n 98.7 1.3E-07 2.9E-12 72.6 10.8 75 96-190 1-76 (80)
265 PRK09126 hypothetical protein; 98.7 1.1E-07 2.4E-12 97.3 13.5 117 94-210 3-168 (392)
266 COG2143 Thioredoxin-related pr 98.7 9.6E-08 2.1E-12 79.0 10.3 91 447-537 36-146 (182)
267 COG3075 GlpB Anaerobic glycero 98.7 9.3E-07 2E-11 83.0 18.1 119 281-404 263-419 (421)
268 TIGR01988 Ubi-OHases Ubiquinon 98.7 8.9E-08 1.9E-12 97.7 12.6 114 96-209 1-163 (385)
269 TIGR01984 UbiH 2-polyprenyl-6- 98.7 8.4E-08 1.8E-12 97.8 12.4 114 96-209 1-162 (382)
270 PF00890 FAD_binding_2: FAD bi 98.7 1.4E-07 3.1E-12 97.3 14.2 56 284-340 149-204 (417)
271 PLN02661 Putative thiazole syn 98.7 1.3E-07 2.8E-12 92.2 12.9 115 93-208 91-243 (357)
272 TIGR01626 ytfJ_HI0045 conserve 98.7 6.1E-08 1.3E-12 85.8 9.7 83 452-537 58-177 (184)
273 TIGR02540 gpx7 putative glutat 98.7 9.2E-08 2E-12 83.7 10.8 89 452-540 21-153 (153)
274 PRK07843 3-ketosteroid-delta-1 98.7 1.3E-08 2.8E-13 108.2 6.3 104 239-345 159-276 (557)
275 PRK08163 salicylate hydroxylas 98.7 1.2E-07 2.5E-12 97.3 13.1 116 94-209 4-166 (396)
276 PRK06912 acoL dihydrolipoamide 98.7 2.3E-07 5E-12 96.7 15.1 100 94-213 170-272 (458)
277 PRK06617 2-octaprenyl-6-methox 98.7 1.1E-07 2.4E-12 96.5 12.4 116 94-209 1-160 (374)
278 PRK07494 2-octaprenyl-6-methox 98.7 1.5E-07 3.2E-12 96.2 13.4 117 93-209 6-167 (388)
279 TIGR01350 lipoamide_DH dihydro 98.7 2.4E-07 5.2E-12 96.9 15.2 100 93-212 169-272 (461)
280 COG4232 Thiol:disulfide interc 98.7 5.2E-08 1.1E-12 98.9 9.6 95 444-539 464-567 (569)
281 PRK06183 mhpA 3-(3-hydroxyphen 98.7 3.2E-07 6.8E-12 97.7 15.9 118 92-209 8-174 (538)
282 PRK06134 putative FAD-binding 98.7 1.7E-07 3.8E-12 100.2 13.7 98 240-340 161-279 (581)
283 PRK08849 2-octaprenyl-3-methyl 98.7 1.8E-07 3.9E-12 95.3 13.2 116 95-210 4-168 (384)
284 PRK11445 putative oxidoreducta 98.7 2.4E-07 5.3E-12 93.0 14.0 114 94-209 1-157 (351)
285 PRK06416 dihydrolipoamide dehy 98.7 3.2E-07 6.8E-12 96.0 15.3 100 94-213 172-276 (462)
286 COG0526 TrxA Thiol-disulfide i 98.7 7.2E-08 1.6E-12 80.1 8.4 84 453-536 32-120 (127)
287 TIGR01377 soxA_mon sarcosine o 98.7 1.7E-07 3.6E-12 95.5 12.5 54 155-208 145-199 (380)
288 PRK08850 2-octaprenyl-6-methox 98.7 2E-07 4.3E-12 95.8 13.0 116 94-209 4-168 (405)
289 PRK07588 hypothetical protein; 98.7 2.1E-07 4.6E-12 95.1 13.1 114 95-209 1-158 (391)
290 COG0654 UbiH 2-polyprenyl-6-me 98.7 2.7E-07 5.8E-12 94.0 13.7 116 94-209 2-162 (387)
291 COG1053 SdhA Succinate dehydro 98.7 3.7E-07 8E-12 95.8 14.8 56 353-408 355-418 (562)
292 PRK05732 2-octaprenyl-6-methox 98.7 2E-07 4.3E-12 95.5 12.7 116 94-209 3-169 (395)
293 TIGR02196 GlrX_YruB Glutaredox 98.7 1.5E-07 3.3E-12 71.0 8.6 69 457-537 2-74 (74)
294 cd00340 GSH_Peroxidase Glutath 98.7 1.2E-07 2.6E-12 82.9 9.0 83 452-535 21-151 (152)
295 KOG2501 Thioredoxin, nucleored 98.7 7.1E-08 1.5E-12 81.4 7.1 70 452-521 32-130 (157)
296 PRK05976 dihydrolipoamide dehy 98.6 6E-07 1.3E-11 94.0 15.6 100 94-213 180-285 (472)
297 PF12831 FAD_oxidored: FAD dep 98.6 2.3E-08 4.9E-13 103.0 4.6 109 96-207 1-148 (428)
298 PRK06126 hypothetical protein; 98.6 5.4E-07 1.2E-11 96.2 15.2 117 93-209 6-188 (545)
299 PRK11728 hydroxyglutarate oxid 98.6 2.9E-07 6.3E-12 94.1 12.6 56 154-209 148-204 (393)
300 PRK06996 hypothetical protein; 98.6 3.3E-07 7.2E-12 93.8 13.0 117 91-207 8-172 (398)
301 PRK11259 solA N-methyltryptoph 98.6 3.5E-07 7.6E-12 93.0 13.1 54 155-208 149-203 (376)
302 PRK07045 putative monooxygenas 98.6 5.2E-07 1.1E-11 92.2 14.4 117 93-209 4-165 (388)
303 TIGR02053 MerA mercuric reduct 98.6 6.7E-07 1.5E-11 93.5 15.5 100 94-213 166-270 (463)
304 cd02969 PRX_like1 Peroxiredoxi 98.6 3.3E-07 7.2E-12 81.9 11.3 89 452-540 24-152 (171)
305 KOG0914 Thioredoxin-like prote 98.6 3.8E-08 8.2E-13 86.0 4.9 83 442-524 132-222 (265)
306 PRK04965 NADH:flavorubredoxin 98.6 3.9E-07 8.6E-12 92.6 13.2 99 94-211 141-241 (377)
307 PRK05868 hypothetical protein; 98.6 4.7E-07 1E-11 91.6 13.5 115 94-209 1-160 (372)
308 PRK06753 hypothetical protein; 98.6 4.2E-07 9.2E-12 92.3 13.2 112 96-209 2-152 (373)
309 PRK08132 FAD-dependent oxidore 98.6 8.1E-07 1.8E-11 94.9 15.7 117 93-209 22-185 (547)
310 PRK06481 fumarate reductase fl 98.6 9.1E-07 2E-11 93.2 15.6 116 93-208 60-250 (506)
311 PRK07236 hypothetical protein; 98.6 2.9E-07 6.3E-12 93.9 11.5 114 94-209 6-154 (386)
312 PRK07818 dihydrolipoamide dehy 98.6 8.9E-07 1.9E-11 92.6 15.4 99 94-212 172-276 (466)
313 KOG1672 ATP binding protein [P 98.6 1.9E-07 4.1E-12 80.5 8.3 87 439-527 71-157 (211)
314 TIGR02200 GlrX_actino Glutared 98.6 2.2E-07 4.7E-12 70.9 8.0 70 457-537 2-76 (77)
315 PRK09754 phenylpropionate diox 98.6 4.6E-07 1E-11 92.6 12.8 98 94-211 144-243 (396)
316 PRK06115 dihydrolipoamide dehy 98.6 1.2E-06 2.5E-11 91.6 15.4 100 93-212 173-279 (466)
317 PRK06370 mercuric reductase; V 98.6 7.4E-07 1.6E-11 93.1 14.0 99 94-212 171-274 (463)
318 PRK14694 putative mercuric red 98.6 8.2E-07 1.8E-11 92.8 14.2 99 94-213 178-277 (468)
319 PRK06116 glutathione reductase 98.6 8.8E-07 1.9E-11 92.3 14.4 100 94-213 167-269 (450)
320 PRK06185 hypothetical protein; 98.6 7.8E-07 1.7E-11 91.5 13.6 117 93-209 5-169 (407)
321 PRK05249 soluble pyridine nucl 98.6 8.2E-07 1.8E-11 92.9 13.8 100 93-212 174-275 (461)
322 PF02114 Phosducin: Phosducin; 98.6 3.7E-07 8E-12 86.2 10.0 96 442-539 133-237 (265)
323 PRK08010 pyridine nucleotide-d 98.6 9E-07 1.9E-11 91.9 13.9 100 93-212 157-257 (441)
324 PRK06327 dihydrolipoamide dehy 98.6 1.2E-06 2.6E-11 91.7 14.9 101 93-213 182-288 (475)
325 PLN02507 glutathione reductase 98.5 1.2E-06 2.7E-11 91.9 14.6 100 94-213 203-304 (499)
326 PRK07121 hypothetical protein; 98.5 6.1E-06 1.3E-10 86.9 19.9 58 285-344 186-245 (492)
327 COG2509 Uncharacterized FAD-de 98.5 1.3E-06 2.7E-11 86.0 13.2 48 354-403 437-484 (486)
328 PRK09564 coenzyme A disulfide 98.5 8.6E-07 1.9E-11 92.3 13.0 100 94-212 149-249 (444)
329 COG3380 Predicted NAD/FAD-depe 98.5 3.2E-07 6.9E-12 83.9 8.2 109 95-207 2-158 (331)
330 PLN02985 squalene monooxygenas 98.5 1.4E-06 3.1E-11 91.4 14.4 120 90-209 39-208 (514)
331 PRK04176 ribulose-1,5-biphosph 98.5 2E-06 4.2E-11 81.9 14.0 163 240-404 25-256 (257)
332 TIGR01424 gluta_reduc_2 glutat 98.5 1.1E-06 2.3E-11 91.4 13.2 99 94-212 166-266 (446)
333 TIGR01789 lycopene_cycl lycope 98.5 7.5E-07 1.6E-11 89.8 11.7 106 96-210 1-139 (370)
334 TIGR03385 CoA_CoA_reduc CoA-di 98.5 9.7E-07 2.1E-11 91.3 12.7 99 94-212 137-236 (427)
335 PF13192 Thioredoxin_3: Thiore 98.5 1E-06 2.2E-11 66.7 9.5 72 459-537 4-76 (76)
336 PRK08274 tricarballylate dehyd 98.5 1.8E-06 3.9E-11 90.4 14.7 116 93-208 3-191 (466)
337 PRK08243 4-hydroxybenzoate 3-m 98.5 1.6E-06 3.4E-11 88.7 14.0 116 94-209 2-163 (392)
338 PRK14727 putative mercuric red 98.5 1.5E-06 3.3E-11 91.0 14.1 99 94-213 188-287 (479)
339 TIGR01813 flavo_cyto_c flavocy 98.5 1.1E-06 2.4E-11 91.3 12.9 114 96-209 1-192 (439)
340 TIGR03329 Phn_aa_oxid putative 98.5 1.6E-06 3.5E-11 90.4 14.1 53 155-208 183-236 (460)
341 PF13450 NAD_binding_8: NAD(P) 98.5 1.5E-07 3.3E-12 69.4 4.5 38 99-139 1-38 (68)
342 TIGR01421 gluta_reduc_1 glutat 98.5 1.6E-06 3.4E-11 90.1 13.7 99 94-212 166-268 (450)
343 PRK12409 D-amino acid dehydrog 98.5 2.2E-06 4.8E-11 88.2 14.7 54 155-208 197-257 (410)
344 PRK07845 flavoprotein disulfid 98.5 1.5E-06 3.4E-11 90.6 13.6 100 94-213 177-278 (466)
345 cd03017 PRX_BCP Peroxiredoxin 98.5 7.9E-07 1.7E-11 76.6 9.2 84 453-536 23-139 (140)
346 PRK07846 mycothione reductase; 98.5 2.8E-06 6.1E-11 88.2 15.0 100 94-214 166-267 (451)
347 PF14595 Thioredoxin_9: Thiore 98.5 6.1E-07 1.3E-11 75.2 8.1 90 446-538 34-127 (129)
348 COG0446 HcaD Uncharacterized N 98.5 1.1E-06 2.4E-11 90.5 11.9 98 94-210 136-238 (415)
349 TIGR02360 pbenz_hydroxyl 4-hyd 98.5 2E-06 4.4E-11 87.7 13.6 116 94-209 2-163 (390)
350 PRK07057 sdhA succinate dehydr 98.5 1.5E-05 3.3E-10 85.4 20.8 52 287-338 159-210 (591)
351 KOG2820 FAD-dependent oxidored 98.5 1.6E-06 3.4E-11 81.9 11.4 118 91-208 4-211 (399)
352 PRK13369 glycerol-3-phosphate 98.5 2.2E-06 4.9E-11 90.2 14.3 38 92-129 4-41 (502)
353 PTZ00139 Succinate dehydrogena 98.5 1E-05 2.2E-10 87.0 19.4 51 287-337 177-227 (617)
354 PRK06475 salicylate hydroxylas 98.5 2.2E-06 4.7E-11 87.9 13.7 115 95-209 3-167 (400)
355 PLN00128 Succinate dehydrogena 98.5 6.6E-06 1.4E-10 88.5 17.8 51 288-338 199-249 (635)
356 PRK12266 glpD glycerol-3-phosp 98.4 1.9E-06 4.1E-11 90.8 13.1 37 93-129 5-41 (508)
357 TIGR01423 trypano_reduc trypan 98.4 2.9E-06 6.4E-11 88.5 14.3 100 93-212 186-291 (486)
358 PRK06175 L-aspartate oxidase; 98.4 2.3E-06 4.9E-11 88.3 13.3 49 353-402 331-387 (433)
359 PRK13748 putative mercuric red 98.4 2.3E-06 4.9E-11 91.9 13.8 98 94-212 270-368 (561)
360 TIGR03219 salicylate_mono sali 98.4 2E-06 4.3E-11 88.7 12.9 112 96-209 2-159 (414)
361 PF13728 TraF: F plasmid trans 98.4 2.3E-06 5.1E-11 78.6 11.8 83 452-536 119-214 (215)
362 PRK09078 sdhA succinate dehydr 98.4 1.2E-05 2.5E-10 86.4 18.9 52 287-338 160-211 (598)
363 PRK13512 coenzyme A disulfide 98.4 1.7E-06 3.7E-11 89.6 12.1 96 94-212 148-244 (438)
364 PRK08958 sdhA succinate dehydr 98.4 1.5E-05 3.3E-10 85.3 19.5 51 287-337 154-204 (588)
365 TIGR01989 COQ6 Ubiquinone bios 98.4 2.2E-06 4.7E-11 88.9 12.8 115 95-209 1-183 (437)
366 PRK06467 dihydrolipoamide dehy 98.4 3.4E-06 7.4E-11 88.1 14.1 99 94-213 174-278 (471)
367 cd01659 TRX_superfamily Thiore 98.4 1E-06 2.2E-11 64.1 7.4 60 457-517 1-63 (69)
368 PRK07538 hypothetical protein; 98.4 4E-06 8.7E-11 86.3 14.3 114 96-209 2-165 (413)
369 TIGR03364 HpnW_proposed FAD de 98.4 3.2E-06 6.9E-11 85.6 12.9 34 95-128 1-34 (365)
370 PRK05335 tRNA (uracil-5-)-meth 98.4 1.1E-06 2.5E-11 87.8 9.3 46 360-407 323-368 (436)
371 PLN02815 L-aspartate oxidase 98.4 1.9E-05 4.1E-10 84.3 19.1 53 284-336 164-219 (594)
372 PF04820 Trp_halogenase: Trypt 98.4 1.6E-06 3.6E-11 89.6 10.7 57 154-210 153-212 (454)
373 TIGR03452 mycothione_red mycot 98.4 3.9E-06 8.5E-11 87.2 13.5 99 94-213 169-269 (452)
374 TIGR01373 soxB sarcosine oxida 98.4 5.1E-06 1.1E-10 85.4 14.3 38 91-128 27-66 (407)
375 TIGR02462 pyranose_ox pyranose 98.4 6.2E-06 1.3E-10 86.2 14.8 59 286-344 224-284 (544)
376 PTZ00256 glutathione peroxidas 98.4 1.4E-06 3E-11 78.6 8.8 88 453-540 40-181 (183)
377 PTZ00058 glutathione reductase 98.4 4.1E-06 9E-11 88.5 13.6 99 94-212 237-339 (561)
378 KOG2415 Electron transfer flav 98.4 2.2E-06 4.7E-11 82.9 10.3 116 90-208 72-255 (621)
379 TIGR02731 phytoene_desat phyto 98.4 1.6E-06 3.5E-11 90.4 10.5 40 96-138 1-40 (453)
380 PTZ00052 thioredoxin reductase 98.4 4.9E-06 1.1E-10 87.5 13.9 99 94-213 182-282 (499)
381 PF06110 DUF953: Eukaryotic pr 98.4 3.2E-06 7E-11 69.0 9.7 93 442-537 5-118 (119)
382 PRK01747 mnmC bifunctional tRN 98.4 4.4E-06 9.5E-11 91.2 13.8 54 155-209 408-463 (662)
383 TIGR01438 TGR thioredoxin and 98.4 5E-06 1.1E-10 86.9 13.6 98 94-212 180-282 (484)
384 PRK11101 glpA sn-glycerol-3-ph 98.4 4.5E-06 9.7E-11 88.7 13.4 36 94-129 6-41 (546)
385 PRK07803 sdhA succinate dehydr 98.3 6.6E-06 1.4E-10 88.7 14.2 52 353-404 391-449 (626)
386 TIGR00137 gid_trmFO tRNA:m(5)U 98.3 3.3E-06 7.1E-11 85.2 11.0 41 365-407 327-367 (433)
387 PRK08641 sdhA succinate dehydr 98.3 2.8E-05 6.1E-10 83.3 18.7 48 290-337 151-198 (589)
388 TIGR02374 nitri_red_nirB nitri 98.3 4.3E-06 9.4E-11 92.5 12.7 101 93-212 139-241 (785)
389 COG1252 Ndh NADH dehydrogenase 98.3 2.7E-06 6E-11 84.7 10.0 96 94-211 155-264 (405)
390 KOG1335 Dihydrolipoamide dehyd 98.3 3.5E-06 7.7E-11 80.7 9.9 104 90-213 207-318 (506)
391 PRK06292 dihydrolipoamide dehy 98.3 5.8E-06 1.3E-10 86.4 12.7 100 93-213 168-272 (460)
392 cd02991 UAS_ETEA UAS family, E 98.3 1.9E-05 4.2E-10 64.9 13.0 96 443-539 7-112 (116)
393 PTZ00383 malate:quinone oxidor 98.3 8.4E-06 1.8E-10 84.8 13.5 56 153-208 209-272 (497)
394 KOG0913 Thiol-disulfide isomer 98.3 2.1E-07 4.5E-12 82.9 0.9 83 455-538 41-124 (248)
395 PF03190 Thioredox_DsbH: Prote 98.3 3.6E-06 7.8E-11 72.4 8.4 85 438-522 22-118 (163)
396 PRK14989 nitrite reductase sub 98.3 6.6E-06 1.4E-10 91.2 12.6 100 94-212 145-248 (847)
397 TIGR00292 thiazole biosynthesi 98.3 7.6E-06 1.6E-10 77.6 11.0 161 240-402 21-253 (254)
398 COG1231 Monoamine oxidase [Ami 98.3 1.1E-05 2.4E-10 80.0 12.2 76 92-172 5-81 (450)
399 PRK00711 D-amino acid dehydrog 98.3 1.6E-05 3.5E-10 82.0 14.3 55 155-209 201-257 (416)
400 PRK00522 tpx lipid hydroperoxi 98.3 1.2E-05 2.7E-10 71.2 11.6 85 452-537 43-166 (167)
401 KOG0911 Glutaredoxin-related p 98.3 6.9E-07 1.5E-11 79.4 3.5 87 440-530 7-93 (227)
402 PRK11200 grxA glutaredoxin 1; 98.2 8.1E-06 1.7E-10 63.4 9.1 75 456-539 2-82 (85)
403 COG0579 Predicted dehydrogenas 98.2 1.7E-05 3.6E-10 79.8 13.6 55 154-208 152-210 (429)
404 COG0665 DadA Glycine/D-amino a 98.2 1.6E-05 3.5E-10 81.1 14.1 37 93-129 3-39 (387)
405 KOG0029 Amine oxidase [Seconda 98.2 1.3E-06 2.9E-11 90.4 5.8 47 91-140 12-58 (501)
406 PF00578 AhpC-TSA: AhpC/TSA fa 98.2 6.3E-06 1.4E-10 69.2 9.0 70 452-521 24-123 (124)
407 PRK06263 sdhA succinate dehydr 98.2 9.9E-06 2.2E-10 86.2 12.6 51 353-404 348-405 (543)
408 PLN02546 glutathione reductase 98.2 1.3E-05 2.8E-10 84.8 13.2 100 93-212 251-353 (558)
409 TIGR02180 GRX_euk Glutaredoxin 98.2 3.4E-06 7.5E-11 65.4 6.7 59 457-519 1-64 (84)
410 cd03015 PRX_Typ2cys Peroxiredo 98.2 1.1E-05 2.5E-10 72.1 10.9 88 452-539 28-156 (173)
411 PRK09437 bcp thioredoxin-depen 98.2 1E-05 2.2E-10 70.8 10.1 86 452-537 29-150 (154)
412 COG0445 GidA Flavin-dependent 98.2 3.2E-06 6.9E-11 85.1 7.3 114 94-207 4-156 (621)
413 PLN02464 glycerol-3-phosphate 98.2 1.7E-05 3.7E-10 85.4 13.6 37 93-129 70-106 (627)
414 PTZ00153 lipoamide dehydrogena 98.2 1.3E-05 2.9E-10 86.0 12.6 100 94-213 312-431 (659)
415 TIGR02739 TraF type-F conjugat 98.2 2E-05 4.3E-10 73.7 12.1 85 453-539 150-247 (256)
416 PRK08294 phenol 2-monooxygenas 98.2 3.3E-05 7.2E-10 83.4 15.6 36 93-128 31-67 (634)
417 PTZ00367 squalene epoxidase; P 98.2 1.8E-05 4E-10 83.7 12.9 35 93-127 32-66 (567)
418 cd02970 PRX_like2 Peroxiredoxi 98.2 1E-05 2.2E-10 70.4 9.3 43 453-495 24-67 (149)
419 PRK07395 L-aspartate oxidase; 98.2 1.3E-05 2.7E-10 85.2 11.7 35 93-128 8-42 (553)
420 COG1635 THI4 Ribulose 1,5-bisp 98.2 3.2E-05 7E-10 68.9 12.0 163 240-404 30-261 (262)
421 PTZ00318 NADH dehydrogenase-li 98.2 1.7E-05 3.6E-10 81.9 11.8 93 95-210 174-281 (424)
422 COG0578 GlpA Glycerol-3-phosph 98.1 1.8E-05 4E-10 81.2 11.8 50 286-337 174-223 (532)
423 TIGR03137 AhpC peroxiredoxin. 98.1 2.1E-05 4.6E-10 71.1 10.9 87 452-538 30-154 (187)
424 TIGR01176 fum_red_Fp fumarate 98.1 3.4E-05 7.3E-10 82.5 14.2 51 353-404 357-415 (580)
425 TIGR01292 TRX_reduct thioredox 98.1 1.6E-05 3.5E-10 78.0 10.7 95 242-344 2-117 (300)
426 PRK08255 salicylyl-CoA 5-hydro 98.1 6.3E-06 1.4E-10 91.1 8.4 102 96-208 2-140 (765)
427 COG1233 Phytoene dehydrogenase 98.1 3.1E-06 6.7E-11 88.6 5.3 43 93-138 2-44 (487)
428 cd03014 PRX_Atyp2cys Peroxired 98.1 2.3E-05 5E-10 67.7 9.9 84 452-536 25-141 (143)
429 PRK13339 malate:quinone oxidor 98.1 4.4E-05 9.6E-10 79.2 13.7 34 92-125 4-39 (497)
430 PRK12843 putative FAD-binding 98.1 6.3E-05 1.4E-09 80.6 15.3 35 94-128 16-50 (578)
431 PLN02927 antheraxanthin epoxid 98.1 5.3E-05 1.2E-09 80.9 14.3 36 92-127 79-114 (668)
432 PRK10606 btuE putative glutath 98.1 1.5E-05 3.2E-10 71.2 8.5 42 452-494 24-66 (183)
433 PRK12839 hypothetical protein; 98.1 7.9E-05 1.7E-09 79.5 15.4 38 91-128 5-42 (572)
434 PRK10877 protein disulfide iso 98.1 2.4E-05 5.3E-10 73.0 10.1 80 453-539 107-230 (232)
435 cd03018 PRX_AhpE_like Peroxire 98.1 3.3E-05 7.2E-10 67.2 10.2 85 453-537 28-148 (149)
436 PRK10262 thioredoxin reductase 98.1 3.2E-05 7E-10 76.7 11.4 98 93-212 145-251 (321)
437 PRK13703 conjugal pilus assemb 98.1 3.8E-05 8.2E-10 71.4 10.8 86 453-538 143-239 (248)
438 PRK12845 3-ketosteroid-delta-1 98.0 0.00014 3.1E-09 77.4 16.4 37 91-128 13-49 (564)
439 COG3349 Uncharacterized conser 98.0 8.3E-06 1.8E-10 82.4 6.4 42 95-139 1-42 (485)
440 PLN02661 Putative thiazole syn 98.0 0.0001 2.2E-09 72.2 13.6 163 240-404 92-329 (357)
441 PRK13190 putative peroxiredoxi 98.0 5.8E-05 1.3E-09 69.1 11.2 87 453-539 27-153 (202)
442 COG2907 Predicted NAD/FAD-bind 98.0 2.5E-05 5.3E-10 74.2 8.6 42 93-138 7-48 (447)
443 PRK07208 hypothetical protein; 98.0 8.2E-06 1.8E-10 85.9 6.0 43 93-138 3-45 (479)
444 PRK15317 alkyl hydroperoxide r 98.0 5.3E-05 1.1E-09 80.2 12.0 87 447-538 109-196 (517)
445 KOG3414 Component of the U4/U6 98.0 0.00013 2.7E-09 58.4 10.9 94 445-538 14-118 (142)
446 PRK11883 protoporphyrinogen ox 98.0 7.8E-06 1.7E-10 85.3 5.6 42 95-139 1-44 (451)
447 cd02968 SCO SCO (an acronym fo 98.0 3.5E-05 7.6E-10 66.4 8.6 43 452-494 21-68 (142)
448 KOG1336 Monodehydroascorbate/f 98.0 6.1E-05 1.3E-09 75.0 11.1 103 94-215 213-319 (478)
449 PF00462 Glutaredoxin: Glutare 98.0 3.8E-05 8.3E-10 55.1 7.4 55 457-519 1-59 (60)
450 PF07992 Pyr_redox_2: Pyridine 98.0 2E-05 4.4E-10 72.3 7.2 103 242-345 1-128 (201)
451 TIGR02183 GRXA Glutaredoxin, G 97.9 5.8E-05 1.3E-09 58.6 8.5 74 457-539 2-81 (86)
452 cd02976 NrdH NrdH-redoxin (Nrd 97.9 5.3E-05 1.2E-09 56.6 8.1 67 457-535 2-72 (73)
453 PF02966 DIM1: Mitosis protein 97.9 0.00034 7.4E-09 57.0 12.8 96 442-538 8-115 (133)
454 COG2081 Predicted flavoprotein 97.9 7.7E-05 1.7E-09 72.9 10.8 93 241-340 4-168 (408)
455 PLN02268 probable polyamine ox 97.9 1.1E-05 2.4E-10 83.8 5.5 76 95-174 1-78 (435)
456 PRK01438 murD UDP-N-acetylmura 97.9 3E-05 6.5E-10 81.5 8.8 80 94-214 16-95 (480)
457 PLN02576 protoporphyrinogen ox 97.9 1.3E-05 2.7E-10 84.8 6.0 44 93-139 11-55 (496)
458 PF11009 DUF2847: Protein of u 97.9 0.00022 4.7E-09 56.5 11.3 93 440-532 5-104 (105)
459 PRK10382 alkyl hydroperoxide r 97.9 0.00014 3E-09 65.5 11.5 87 452-538 30-154 (187)
460 KOG3425 Uncharacterized conser 97.9 5.6E-05 1.2E-09 60.0 7.7 75 442-516 12-104 (128)
461 TIGR03169 Nterm_to_SelD pyridi 97.9 8.6E-05 1.9E-09 75.1 11.4 93 94-210 145-244 (364)
462 TIGR00562 proto_IX_ox protopor 97.9 1.4E-05 3E-10 83.8 5.6 43 94-139 2-48 (462)
463 cd02971 PRX_family Peroxiredox 97.9 0.00011 2.4E-09 63.1 10.2 77 452-528 21-131 (140)
464 PRK07233 hypothetical protein; 97.9 1.4E-05 3.1E-10 82.9 5.4 40 96-138 1-40 (434)
465 PTZ00306 NADH-dependent fumara 97.9 0.00012 2.6E-09 84.5 13.3 37 92-128 407-443 (1167)
466 TIGR02485 CobZ_N-term precorri 97.9 0.00016 3.4E-09 75.0 12.7 54 155-208 123-182 (432)
467 PRK15000 peroxidase; Provision 97.9 0.00017 3.6E-09 65.8 11.3 87 452-538 33-160 (200)
468 KOG2311 NAD/FAD-utilizing prot 97.8 6E-05 1.3E-09 74.4 8.3 34 92-125 26-59 (679)
469 PRK12416 protoporphyrinogen ox 97.8 2.1E-05 4.5E-10 82.4 5.4 43 94-139 1-49 (463)
470 TIGR02733 desat_CrtD C-3',4' d 97.8 2E-05 4.2E-10 83.2 5.2 41 95-138 2-42 (492)
471 TIGR00031 UDP-GALP_mutase UDP- 97.8 2.4E-05 5.2E-10 78.3 5.5 41 94-137 1-41 (377)
472 cd03020 DsbA_DsbC_DsbG DsbA fa 97.8 7.7E-05 1.7E-09 68.2 8.3 76 453-536 77-197 (197)
473 KOG2404 Fumarate reductase, fl 97.8 0.00011 2.3E-09 69.2 9.0 33 96-128 11-43 (477)
474 PRK12770 putative glutamate sy 97.8 0.00013 2.8E-09 73.3 10.4 94 94-211 172-288 (352)
475 PTZ00137 2-Cys peroxiredoxin; 97.8 0.00044 9.5E-09 65.2 12.8 87 452-538 97-223 (261)
476 TIGR02190 GlrX-dom Glutaredoxi 97.8 0.00011 2.3E-09 56.2 7.2 69 454-536 7-78 (79)
477 TIGR03140 AhpF alkyl hydropero 97.8 0.00021 4.7E-09 75.6 12.0 82 452-538 116-197 (515)
478 PLN02529 lysine-specific histo 97.8 3.6E-05 7.8E-10 83.3 6.1 45 92-139 158-202 (738)
479 TIGR02730 carot_isom carotene 97.8 3.1E-05 6.7E-10 81.7 5.5 41 95-138 1-41 (493)
480 KOG1346 Programmed cell death 97.7 0.0001 2.2E-09 71.5 8.3 99 94-212 347-452 (659)
481 TIGR02734 crtI_fam phytoene de 97.7 2.7E-05 5.8E-10 82.4 4.9 40 97-139 1-40 (502)
482 COG1232 HemY Protoporphyrinoge 97.7 3.5E-05 7.6E-10 78.1 5.4 41 96-139 2-44 (444)
483 PRK11657 dsbG disulfide isomer 97.7 0.00016 3.6E-09 68.3 9.5 84 453-538 117-250 (251)
484 PRK11749 dihydropyrimidine deh 97.7 0.0003 6.6E-09 73.4 12.3 95 93-211 272-389 (457)
485 PLN02568 polyamine oxidase 97.7 4.3E-05 9.4E-10 80.6 5.9 43 94-139 5-52 (539)
486 PF13848 Thioredoxin_6: Thiore 97.7 0.00037 8.1E-09 62.9 11.2 96 443-538 85-184 (184)
487 PF13738 Pyr_redox_3: Pyridine 97.7 0.00014 3.1E-09 66.8 8.5 92 244-342 1-143 (203)
488 PRK10329 glutaredoxin-like pro 97.7 0.00035 7.5E-09 53.4 9.2 70 457-538 3-75 (81)
489 PRK13599 putative peroxiredoxi 97.7 0.00033 7.1E-09 64.6 10.7 84 455-538 31-154 (215)
490 TIGR01316 gltA glutamate synth 97.7 0.00022 4.8E-09 74.0 10.4 96 93-212 271-390 (449)
491 cd03016 PRX_1cys Peroxiredoxin 97.7 0.00039 8.5E-09 63.8 10.9 84 455-538 28-152 (203)
492 KOG2853 Possible oxidoreductas 97.7 0.00059 1.3E-08 64.8 11.8 36 93-128 85-124 (509)
493 PLN02172 flavin-containing mon 97.7 0.0006 1.3E-08 70.7 13.1 104 238-344 8-180 (461)
494 PRK13189 peroxiredoxin; Provis 97.7 0.00042 9E-09 64.3 10.7 87 453-539 35-162 (222)
495 COG0493 GltD NADPH-dependent g 97.7 6.8E-05 1.5E-09 76.8 5.9 199 94-340 5-222 (457)
496 PF03486 HI0933_like: HI0933-l 97.6 0.00021 4.6E-09 72.5 9.3 94 242-341 2-168 (409)
497 PF06039 Mqo: Malate:quinone o 97.6 0.00014 3.1E-09 72.6 7.7 70 278-348 184-253 (488)
498 cd03029 GRX_hybridPRX5 Glutare 97.6 0.00034 7.3E-09 52.3 8.1 66 457-536 3-71 (72)
499 PLN02328 lysine-specific histo 97.6 6.6E-05 1.4E-09 81.7 5.7 45 92-139 236-280 (808)
500 KOG1298 Squalene monooxygenase 97.6 0.0003 6.5E-09 67.9 9.2 117 92-208 43-207 (509)
No 1
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=1.9e-48 Score=410.70 Aligned_cols=436 Identities=32% Similarity=0.526 Sum_probs=339.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||||||+||..|+++|++|+|||+.. .||.+.......++|++. ...+.++.+++.+.++++++++
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~----~GG~~~~~~~i~~~pg~~-~~~~~~l~~~l~~~~~~~gv~~ 77 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD----FGGQITITSEVVNYPGIL-NTTGPELMQEMRQQAQDFGVKF 77 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC----CCceEEeccccccCCCCc-CCCHHHHHHHHHHHHHHcCCEE
Confidence 45899999999999999999999999999999854 677777655555666653 3456788899999999999999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
+.++|+.++.+++.+.+......+.+++||+|||++|+.|++||.+.+...++.++..++.. ...+++|+|||+|++|
T Consensus 78 ~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~--~~~g~~VvVIGgG~~g 155 (555)
T TIGR03143 78 LQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE--FFTGMDVFVIGGGFAA 155 (555)
T ss_pred eccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh--hcCCCEEEEECCCHHH
Confidence 88899999987766777765567899999999999999999999876666667666555442 3578999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEE--EccE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL--EAKG 330 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i--~~D~ 330 (540)
+|+|..|++.|.+|+++.+.+.+.......+++++..||++++++.+.++..++ .+..+.+.+..+|+...+ ++|.
T Consensus 156 ~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~G~~~~~~~~~D~ 233 (555)
T TIGR03143 156 AEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVTGEITEYKAPKDA 233 (555)
T ss_pred HHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCCCCEEEEeccccc
Confidence 999999999999999999988765555666666667899999999999998643 344455555445554444 3776
Q ss_pred ----EEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 331 ----LFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 331 ----vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
|++++|++|++.++..+++++++|+|.||+++ +|++|||||+|||+...++.+..|+.+|+.||.+|.++|.+..
T Consensus 234 ~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~~ 312 (555)
T TIGR03143 234 GTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDM-ETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKELK 312 (555)
T ss_pred cceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcc-ccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhhh
Confidence 99999999999998877888889999999998 8999999999999865457788999999999999999997654
Q ss_pred ceeeecCCCccCCC-CcCCCCCCCCcc------eeeeeecCcHHHHHHHHHhCCCe-EEEEEECCCChhhhhhhHHHHHH
Q 009224 407 LLIEFHQPQAEEPK-KDLTDRDVQEGF------DITCTKHKGQYALRKLYHESPRL-ICVLYTSPTCGPCRTLKPILGKV 478 (540)
Q Consensus 407 ~~~~~~~~~~~~~~-v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~ 478 (540)
...... |..+... -+..+.+..+.- .-.+.+.+...+++..+.+-.++ .+..|+.+.|..|..+...++++
T Consensus 313 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~ 391 (555)
T TIGR03143 313 EKLGIA-EEYEEEEAKEASEASAAETTPAATTKKGSLLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEF 391 (555)
T ss_pred hhcCCC-ccccccccccccccccccccccccccchhccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHH
Confidence 422111 1111100 011111111100 01234444567777777776666 56678888999999999999999
Q ss_pred HHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe-CCeEE-EEeeCCCCHHHHHHHHHhhC
Q 009224 479 IDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK-NKEMI-RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 479 ~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~-~~~~g~~~~~~~~~~i~~~l 540 (540)
+... +++.+...|..++++++++|++...|++.+++ +|+.. .++.|...-.||..||..++
T Consensus 392 ~~~s-~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 392 ASLS-EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred HhcC-CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHH
Confidence 8544 58999899999999999999999999999994 66544 68899999999999998653
No 2
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=319.66 Aligned_cols=311 Identities=59% Similarity=1.007 Sum_probs=291.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-CCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.+.+|+|||+|||+..||+++++..++-+|+|..-.++ -|||++.......+|||||+.+.+.++.+.++++..++|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 45689999999999999999999999999999755444 36999999999999999999999999999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCc-cc-ccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPRE-DE-FWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~-~~-~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++..+|..+|...+.|.+.++.+.+.+|.+|+|||+..+...+||+ +. ||.+++..|..|++..+++++|..+|||||
T Consensus 87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG 166 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG 166 (322)
T ss_pred eeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence 9999999999999999999899999999999999999999889987 44 999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
.+++|-|.+|.+.+.+|+++.|++.+.++..+.++.++..+|++++++.+.+..++ .+.+.++.+.+..+|+...++++
T Consensus 167 DsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~ 245 (322)
T KOG0404|consen 167 DSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVS 245 (322)
T ss_pred HHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccc
Confidence 99999999999999999999999999999999999999999999999998888777 35677899999999999999999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
-+++++|..|++.+++..+++|.+|+|.+.+..-.|++||+||+||+....++++..|...|..||..+.+||..
T Consensus 246 GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~s 320 (322)
T KOG0404|consen 246 GLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLTS 320 (322)
T ss_pred eeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhhc
Confidence 999999999999999999999999999999777689999999999999988899999999999999999999874
No 3
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=340.25 Aligned_cols=301 Identities=49% Similarity=0.868 Sum_probs=272.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
+.+||+|||||||||+||.++++.+++ ++|+|+.. +||++......++||+++....+.++.+.+.++...++++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~----~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~ 77 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE----PGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVE 77 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC----cCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeE
Confidence 468999999999999999999999999 66666544 6788888889999999999999999999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
+....|..++..++.|.|.++...+++++||||||..++.|.+||+.++++.++++|..+++ .+++|+|+|||||.+
T Consensus 78 ~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg---~~~~k~v~ViGgG~s 154 (305)
T COG0492 78 IVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG---FFKGKDVVVIGGGDS 154 (305)
T ss_pred EEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc---cccCCeEEEEcCCHH
Confidence 99999999988776899988666699999999999999999999988999999999999998 378999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
|+|.|..|.+.+.+|++++|++.+.+...+++++.+..+|++++++.+.++.+++ ++++.+.+.. +....+++|.+
T Consensus 155 Ave~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~~-~~~~~~~~~gv 230 (305)
T COG0492 155 AVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNVK-GEEKELPVDGV 230 (305)
T ss_pred HHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEecC-CceEEEEeceE
Confidence 9999999999999999999999999877888876656699999999999999875 6678888765 66778999999
Q ss_pred EEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 332 i~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
++++|..|++.++.....++++|+|.+|+.+ +|++|||||+||++..+.+++..|..+|..||.++.++|...
T Consensus 231 f~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~-~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 231 FIAIGHLPNTELLKGLGVLDENGYIVVDEEM-ETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred EEecCCCCchHHHhhccccCCCCcEEcCCCc-ccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 9999999999998765558999999999996 999999999999999877789999999999999999998764
No 4
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.7e-41 Score=334.24 Aligned_cols=298 Identities=54% Similarity=0.963 Sum_probs=251.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
+||+|||||+||++||..|++.|++|+|||+.+ +||.+......+++|+++....+.++..++.+.+++++++++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 76 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME----PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY 76 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC----CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999999999999875 5677776666667788776677789999999999999999988
Q ss_pred eeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHH
Q 009224 175 EDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTAT 253 (540)
Q Consensus 175 ~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~ 253 (540)
.+|+.++.+++.|.+.. ++..++||+||+|||+.|+.|.+||.+.++...+..+..... ....+++|+|||+|.+|+
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~~~ 154 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDG--PFFKNKEVAVVGGGDSAI 154 (300)
T ss_pred EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecCh--hhcCCCEEEEECCChHHH
Confidence 99999999888888775 446899999999999999999999987766666655544433 234689999999999999
Q ss_pred HHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCC-CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 254 EEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNP-NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 254 e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
|+|..|++.+.+|+++.+.+.+.....+.+. +++. ||++++++++.++..++ ++..+.+.+..+++++++++|.+|
T Consensus 155 e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~-l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 155 EEALYLTRIAKKVTLVHRRDKFRAEKILLDR-LRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred HHHHHHHhhcCEEEEEEeCcccCcCHHHHHH-HHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCceEEEEccEEE
Confidence 9999999999999999998877655555554 4555 99999999999998653 455666665555677889999999
Q ss_pred EecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 333 YGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 333 ~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
+|+|++|+.+++...+.++++|++.+|+++ ++++||||++|||++..++.+..|+.+|+.||.+|.++|
T Consensus 232 ~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 232 IAIGHEPNTELLKGLLELDEGGYIVTDEGM-RTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred EeeCCCCChHHHHHhheecCCCcEEECCCC-ccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 999999999887655667888999999997 899999999999998445889999999999999998764
No 5
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.5e-41 Score=335.24 Aligned_cols=306 Identities=46% Similarity=0.811 Sum_probs=255.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.+.+||+|||||||||+||..|+++|+++++||+. . +||.+......+++|+.+......++.+++.+....++.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-E---KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETE 79 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-c---CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Confidence 35689999999999999999999999999999954 3 6777777777777888777788888899999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
++.++|+.++..++.|.+..+...+.||+||+|||+.|+.|++||.+.++...++.+..++... ..+++++|||+|++
T Consensus 80 ~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~--~~g~~vvVvGgG~~ 157 (321)
T PRK10262 80 IIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF--YRNQKVAVIGGGNT 157 (321)
T ss_pred EEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH--cCCCEEEEECCCHH
Confidence 8888888899888888887655578999999999999999999998777777777776655433 57899999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccc---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC-CceEEEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRA---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT-GEESVLE 327 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~-g~~~~i~ 327 (540)
|+|+|..|++.+.+|+++++.+.+.. ....+.+.+++.||++++++.+.++..+. +.+.++++.+... +..++++
T Consensus 158 g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i~ 236 (321)
T PRK10262 158 AVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLD 236 (321)
T ss_pred HHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEEE
Confidence 99999999999999999999876543 23444555778999999999999998754 3456677765332 3456899
Q ss_pred ccEEEEecccccCccccccceeccCCCCEEeCCC----ccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 328 AKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG----TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 328 ~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~----~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
+|.||+++|++|+..++..++.++ +|+|.+|++ .++|++|||||+|||++.+.+++..|+.+|..||..|.+++.
T Consensus 237 ~D~vv~a~G~~p~~~l~~~~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 237 VAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred CCEEEEEeCCccChhHhhcccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHH
Confidence 999999999999999877666554 588999972 238999999999999986667888999999999999999997
Q ss_pred cC
Q 009224 404 NN 405 (540)
Q Consensus 404 ~~ 405 (540)
+.
T Consensus 316 ~~ 317 (321)
T PRK10262 316 GL 317 (321)
T ss_pred hc
Confidence 64
No 6
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=3.6e-42 Score=354.79 Aligned_cols=342 Identities=25% Similarity=0.373 Sum_probs=261.0
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc-----cccCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV-----DALSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
|++..|+..|+. ...|...|+++..+.|+.|..++++..+.. ....+...+.+||+|||||||||+||..|++
T Consensus 84 p~p~~~grvC~~--~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~ 161 (464)
T PRK12831 84 ALPAVCGRVCPQ--ESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAK 161 (464)
T ss_pred CchhhhhccCCC--CCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHh
Confidence 788888888843 236788888888899999999999887631 1122334567899999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCC-hHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGIT-GPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+|++|+|+|+.+. +||++.+ ++|.+.. ..++..+..+.++++|++++.++... ..+++.....
T Consensus 162 ~G~~V~v~e~~~~---~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~~~~~~ 225 (464)
T PRK12831 162 MGYDVTIFEALHE---PGGVLVY--------GIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTIDELLE 225 (464)
T ss_pred CCCeEEEEecCCC---CCCeeee--------cCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCHHHHHh
Confidence 9999999999877 8888864 3333222 23477777888899999999886442 1122211112
Q ss_pred EEEecEEEEccCC-CCCCCCCCCcccccCCCeeee-ee----------cCC-CCCCCCCCEEEEEeCCccHHHHHHHHHh
Q 009224 195 KVKCHSIVFATGA-TAKRLNLPREDEFWSRGISAC-AI----------CDG-ASPLFKGQVLAVVGGGDTATEEAIYLTK 261 (540)
Q Consensus 195 ~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~-~~----------~~~-~~~~~~~k~v~VvG~G~~a~e~a~~l~~ 261 (540)
.+.||+||||||+ .|+.+++||.+.. ++... .+ ... ......+++|+|||+|++|+|+|..+.+
T Consensus 226 ~~~~d~viiAtGa~~~~~l~ipG~~~~---gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r 302 (464)
T PRK12831 226 EEGFDAVFIGSGAGLPKFMGIPGENLN---GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALR 302 (464)
T ss_pred ccCCCEEEEeCCCCCCCCCCCCCcCCc---CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHH
Confidence 3569999999998 6999999997631 11111 00 000 0123468999999999999999999999
Q ss_pred cCCeEEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------CCceE
Q 009224 262 FARHVHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------TGEES 324 (540)
Q Consensus 262 ~g~~v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~g~~~ 324 (540)
+|.+|++++|+.. +......+++ +++.||++++++.+.++..+++|+++++.+.... +++..
T Consensus 303 ~Ga~Vtlv~r~~~~~m~a~~~e~~~-a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~ 381 (464)
T PRK12831 303 LGAEVHIVYRRSEEELPARVEEVHH-AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEF 381 (464)
T ss_pred cCCEEEEEeecCcccCCCCHHHHHH-HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceE
Confidence 9999999998753 3333333333 4578999999999999987767788888775321 24456
Q ss_pred EEEccEEEEecccccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
++++|.||+|+|+.|++.++.. +++++.+|++.+|+++++|+.|+|||+|||+.++ .++..|+.+|+.||.+|+++|
T Consensus 382 ~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~-~~v~~Ai~~G~~AA~~I~~~L 460 (464)
T PRK12831 382 VLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA-ATVILAMGAGKKAAKAIDEYL 460 (464)
T ss_pred EEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999987753 6788888999999984499999999999999864 688999999999999999999
Q ss_pred hcC
Q 009224 403 VNN 405 (540)
Q Consensus 403 ~~~ 405 (540)
.++
T Consensus 461 ~~~ 463 (464)
T PRK12831 461 SKK 463 (464)
T ss_pred cCC
Confidence 763
No 7
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=6.8e-42 Score=344.47 Aligned_cols=324 Identities=26% Similarity=0.380 Sum_probs=246.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--------CCCCCcceeeccCccc----c---CCCCCC---CCCh
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--------AGGVPGGQLMTTTEVE----N---FPGFPD---GITG 154 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--------~~~~~gg~~~~~~~~~----~---~~~~~~---~~~~ 154 (540)
..||++||||||||..||.++++.|.+|.|+|+.. .||.|.+.+....... . ..|+.. .++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999999999999999983 3446666666544331 0 122211 1334
Q ss_pred HHHHHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccC
Q 009224 155 PDLMDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWS 222 (540)
Q Consensus 155 ~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~ 222 (540)
.++.++. ...+++.+++++.++...++ .+.+.|.. +.+.++++++|||||++|..|++|+.+...
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~- 159 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGAR- 159 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCe-
Confidence 3333332 23355669999999888777 44555542 137899999999999999999988876521
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
.....+.......|++++|||||++|+|+|..++++|.+||++++.+++++ ..+.+.+.|++.|+++++++
T Consensus 160 ----~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~ 235 (454)
T COG1249 160 ----ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNT 235 (454)
T ss_pred ----EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccc
Confidence 111112122225699999999999999999999999999999999999887 34555566777899999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.+++..+++ ..+.+++ +...++++|.+++|+|++||++-+. .++++|++|+|.|| ++++|++|||||+|
T Consensus 236 ~v~~~~~~~~~--v~v~~~~---g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~G 309 (454)
T COG1249 236 KVTAVEKKDDG--VLVTLED---GEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIG 309 (454)
T ss_pred eEEEEEecCCe--EEEEEec---CCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEee
Confidence 99999887653 2344443 3333789999999999999999553 47999999999999 55588999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHH----HHhcCcce-eeecCCCccCCCCcCCCCCCCCcc
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVER----YLVNNNLL-IEFHQPQAEEPKKDLTDRDVQEGF 432 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~----~l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 432 (540)
||++.++ ..+.|..||+.||.+|.. .+.....| ..|++|++++ ||++|+++++.+
T Consensus 310 DV~~~~~-Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~--VGlte~ea~~~g 369 (454)
T COG1249 310 DVIGGPM-LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIAS--VGLTEEEAKEAG 369 (454)
T ss_pred ccCCCcc-cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCccee--eeCCHHHHHhcC
Confidence 9998865 999999999999999986 11111122 6699999999 999999998754
No 8
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=5.4e-41 Score=345.68 Aligned_cols=337 Identities=25% Similarity=0.379 Sum_probs=256.2
Q ss_pred CCCCCcccceeecCcccccccceeecc----CCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNS----TSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTA 109 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~a 109 (540)
-|++..++..|+. ...|+..|+++. .+.|+.|+.++++..+.... ..+.+...++|+|||||+||+++
T Consensus 71 ~p~p~~~grvC~~--~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~a 148 (449)
T TIGR01316 71 SLLPAICGRVCPQ--ERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLAC 148 (449)
T ss_pred CChhHHhccCCCC--ccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHH
Confidence 3678888888854 235667777665 78899999999988753221 11234466899999999999999
Q ss_pred HHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEE
Q 009224 110 AIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV 189 (540)
Q Consensus 110 A~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v 189 (540)
|..|++.|++|+|+|+.+. +||.+.+ +++.+..+.++.....+.+++.|++++.+.+.. ..+++
T Consensus 149 A~~l~~~G~~V~vie~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~ 212 (449)
T TIGR01316 149 ASELAKAGHSVTVFEALHK---PGGVVTY--------GIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG-----KTATL 212 (449)
T ss_pred HHHHHHCCCcEEEEecCCC---CCcEeee--------cCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC-----CcCCH
Confidence 9999999999999999877 8887754 344444556777777788889999999986442 11222
Q ss_pred EECCeEEEecEEEEccCC-CCCCCCCCCcccccCCCeeeee-e------cC------CCCCCCCCCEEEEEeCCccHHHH
Q 009224 190 KSGERKVKCHSIVFATGA-TAKRLNLPREDEFWSRGISACA-I------CD------GASPLFKGQVLAVVGGGDTATEE 255 (540)
Q Consensus 190 ~~~~~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~~-~------~~------~~~~~~~~k~v~VvG~G~~a~e~ 255 (540)
+.....||+||||||+ .|+.+++||.+.. ++.... + .. .......+++|+|||+|++|+|+
T Consensus 213 --~~~~~~yd~viiAtGa~~p~~~~ipG~~~~---gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 287 (449)
T TIGR01316 213 --EELFSQYDAVFIGTGAGLPKLMNIPGEELC---GVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDS 287 (449)
T ss_pred --HHHHhhCCEEEEeCCCCCCCcCCCCCCCCC---CcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHH
Confidence 2223469999999998 6898899997531 111110 0 00 01123468999999999999999
Q ss_pred HHHHHhcCCeEEEEEecccc--cccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc--------------
Q 009224 256 AIYLTKFARHVHLLVRREQL--RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD-------------- 319 (540)
Q Consensus 256 a~~l~~~g~~v~li~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~-------------- 319 (540)
|..+.++|.+|++++++... ......++ .+++.||++++++.+.++..+++|+++++.+....
T Consensus 288 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~-~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~ 366 (449)
T TIGR01316 288 ARTALRLGAEVHCLYRRTREDMTARVEEIA-HAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLP 366 (449)
T ss_pred HHHHHHcCCEEEEEeecCcccCCCCHHHHH-HHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeee
Confidence 99999999999999997642 22333333 46788999999999999987666778777775321
Q ss_pred -CCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHH
Q 009224 320 -TGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS 397 (540)
Q Consensus 320 -~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~ 397 (540)
.++.+++++|.||+|+|+.|++.++.. +++++++|++.||+++ +|+.|+|||+|||+.. +..+..|+.+|+.||.+
T Consensus 367 ~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~-~Ts~~~VfA~GD~~~g-~~~v~~Ai~~G~~AA~~ 444 (449)
T TIGR01316 367 CGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQ-RTSIPGVFAGGDIILG-AATVIRAMGQGKRAAKS 444 (449)
T ss_pred cCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCC-ccCCCCEEEecCCCCC-cHHHHHHHHHHHHHHHH
Confidence 233467999999999999999987764 6788889999999987 8999999999999976 37889999999999999
Q ss_pred HHHHH
Q 009224 398 VERYL 402 (540)
Q Consensus 398 i~~~l 402 (540)
|+++|
T Consensus 445 I~~~L 449 (449)
T TIGR01316 445 INEYL 449 (449)
T ss_pred HHhhC
Confidence 99875
No 9
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=2.1e-39 Score=340.15 Aligned_cols=305 Identities=36% Similarity=0.630 Sum_probs=257.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
...+||+||||||||++||.+|++.|++|+|+++. +||++......+++++++ ...+.++.+++...+++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-----~GG~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~gv~ 282 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-----FGGQVLDTMGIENFISVP-ETEGPKLAAALEEHVKEYDVD 282 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-----CCCeeeccCcccccCCCC-CCCHHHHHHHHHHHHHHCCCE
Confidence 44689999999999999999999999999999752 788887655556666665 367788999999999999999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.+ +|..++..++.+.+.. ++..+.||+||+|||+.++.+++||.+.+....+.++..++.. ..++++|+|||+|
T Consensus 283 i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~--~~~gk~VvVVGgG 360 (517)
T PRK15317 283 IMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--LFKGKRVAVIGGG 360 (517)
T ss_pred EEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch--hcCCCEEEEECCC
Confidence 9876 8999988777777765 5568999999999999999999999877777777666554432 3578999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
++|+|+|..|+..+.+|+++.+.+.+.....+...+.+..||++++++.+.++..++ +++..+.+.+..++..+++++|
T Consensus 361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D 439 (517)
T PRK15317 361 NSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELE 439 (517)
T ss_pred HHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcC
Confidence 999999999999999999999998876554444444444799999999999998763 5677788877666777789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
.+++++|.+|++.++...+.++++|++.+|+++ +|++|||||+|||++.+.+++..|+.+|..||.++..+|....
T Consensus 440 ~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 440 GVFVQIGLVPNTEWLKGTVELNRRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred EEEEeECCccCchHHhhheeeCCCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 999999999999988755778888999999999 7999999999999997778999999999999999999998754
No 10
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.6e-39 Score=340.60 Aligned_cols=302 Identities=35% Similarity=0.632 Sum_probs=249.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
...+||+||||||||++||..|++.|++|+|++. . +||++......+++++++. ..+.++.+.+.+.+++++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~---~GG~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~gv~ 283 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--R---IGGQVKDTVGIENLISVPY-TTGSQLAANLEEHIKQYPID 283 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--C---CCCccccCcCcccccccCC-CCHHHHHHHHHHHHHHhCCe
Confidence 4569999999999999999999999999999974 2 6777765555555555543 46788899999999999999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.+ +|+.++.+.+.+.+.. ++..+.||+||+|||+.|+.|++||.+.+....+..+..++. ....+++|+|||+|
T Consensus 284 i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~--~~~~~k~VvViGgG 361 (515)
T TIGR03140 284 LMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDG--PFFKGKDVAVIGGG 361 (515)
T ss_pred EEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccCh--hhcCCCEEEEECCc
Confidence 9886 7898988777777765 456799999999999999999999976665555655544433 23468999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcC-CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNN-PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
++|+|+|..|++.+.+|+++.+.+.+.....+.+ .+++ .||++++++.+.++..++ +++.++.+.+..+++.+++++
T Consensus 362 ~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~-~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~~~~~i~~ 439 (515)
T TIGR03140 362 NSGIEAAIDLAGIVRHVTVLEFADELKADKVLQD-KLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDRNSGEEKQLDL 439 (515)
T ss_pred HHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHH-HHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEECCCCcEEEEEc
Confidence 9999999999999999999999887765443333 4554 699999999999997653 456678777655566678999
Q ss_pred cEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 329 KGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 329 D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
|.|++++|.+|++.++...++++++|+|.||+++ +|++|||||+|||++.+.+++..|+.+|..||.+|.+++..
T Consensus 440 D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 440 DGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERG-RTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CEEEEEeCCcCCchHHhhhcccCCCCeEEECCCC-CCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 9999999999999988755777888999999998 89999999999999876678899999999999999999864
No 11
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=3e-39 Score=354.46 Aligned_cols=338 Identities=22% Similarity=0.300 Sum_probs=260.0
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc--------cc----Cc-ccCCcccEEEECCCHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD--------AL----SS-AEKSVENVVIIGSGPAGY 107 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~-~~~~~~~vvVIGgG~aGl 107 (540)
|++..++..|+. ...|...|.++ ..|+.|..+++++.+... .. .. .....++|+|||||||||
T Consensus 244 p~p~~~GrVCp~--~~~CE~~C~~~--~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL 319 (944)
T PRK12779 244 PLPNVTGRVCPQ--ELQCQGVCTHT--KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL 319 (944)
T ss_pred ChhHHhcCcCCC--ccCHHHhccCC--CcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence 788889988853 34577778776 569999999998765411 00 01 234578999999999999
Q ss_pred HHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcE
Q 009224 108 TAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPF 187 (540)
Q Consensus 108 ~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~ 187 (540)
+||..|+++|++|+|||+.+. +||.+.+ ++|.+..+.++.+...+.+++.|++++.+.....+ +
T Consensus 320 saA~~Lar~G~~VtVfE~~~~---~GG~l~y--------GIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~d-----i 383 (944)
T PRK12779 320 INAYLLAVEGFPVTVFEAFHD---LGGVLRY--------GIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKT-----A 383 (944)
T ss_pred HHHHHHHHCCCeEEEEeeCCC---CCceEEc--------cCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccE-----E
Confidence 999999999999999999888 9999875 77888888999999999999999999998655433 2
Q ss_pred EEEECCeEEEecEEEEccCCC-CCCCCCCCcccccCCCeeee-eec------CC-------CCCCCCCCEEEEEeCCccH
Q 009224 188 TVKSGERKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC-AIC------DG-------ASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 188 ~v~~~~~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~-~~~------~~-------~~~~~~~k~v~VvG~G~~a 252 (540)
++. +.....||+|+||||+. |+.+++||.+. .+++.. .+. .. ......+|+|+|||||++|
T Consensus 384 t~~-~l~~~~yDAV~LAtGA~~pr~l~IpG~dl---~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA 459 (944)
T PRK12779 384 TLE-DLKAAGFWKIFVGTGAGLPTFMNVPGEHL---LGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA 459 (944)
T ss_pred eHH-HhccccCCEEEEeCCCCCCCcCCCCCCcC---cCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence 222 22345799999999994 89999999764 112111 000 00 0012368999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCC-CCceeeEEEEEc-----------
Q 009224 253 TEEAIYLTKFARHVHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNT-KGQMSGILLRKV----------- 318 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~g~~~~v~~~~~----------- 318 (540)
+|+|..+.++|.+|++++|++. ++.....++.. .+.||++++...++++..++ ++.+.++.+...
T Consensus 460 ~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~ 538 (944)
T PRK12779 460 MDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRR 538 (944)
T ss_pred HHHHHHHHHcCCEEEEEEecCcccccccHHHHHHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCce
Confidence 9999999999999999998753 33333444443 36799999999999998764 346666655321
Q ss_pred ---cCCceEEEEccEEEEecccccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHH
Q 009224 319 ---DTGEESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCI 393 (540)
Q Consensus 319 ---~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~ 393 (540)
.+|+..+++||.||+|+|+.|+..+... +++++++|.|.+|+..++|+.|+|||+|||+.+ ...+..|+.+|+.
T Consensus 539 ~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G-~~~vv~Ai~eGr~ 617 (944)
T PRK12779 539 SPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARG-GSTAIRAAGDGQA 617 (944)
T ss_pred eeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCC-hHHHHHHHHHHHH
Confidence 1345578999999999999999765433 577888999999986558999999999999987 4789999999999
Q ss_pred HHHHHHHHHhc
Q 009224 394 AALSVERYLVN 404 (540)
Q Consensus 394 aa~~i~~~l~~ 404 (540)
||.+|.++|..
T Consensus 618 AA~~I~~~L~~ 628 (944)
T PRK12779 618 AAKEIVGEIPF 628 (944)
T ss_pred HHHHHHHHhcc
Confidence 99999999875
No 12
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=3e-39 Score=352.92 Aligned_cols=340 Identities=23% Similarity=0.338 Sum_probs=262.2
Q ss_pred CCCCcccceeecCcccccccceeeccCC-CCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTS-GPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
|++..++..|+ ....|...|.++..+ .+++|..++++..+.... +...+...++|+|||||||||+||..|
T Consensus 373 p~p~~~grvC~--~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l 450 (752)
T PRK12778 373 ALPAVCGRVCP--QEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDL 450 (752)
T ss_pred CchhHhcCcCC--CcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 67888888884 334678888888888 899999999987653211 111234678999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
+++|++|+|||+.+. +||.+.+ ++|.+..+.++.+...+.++++|++++.+.... +.+++. +.
T Consensus 451 ~~~G~~V~v~e~~~~---~GG~l~~--------gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~-~l 513 (752)
T PRK12778 451 AKRGYDVTVFEALHE---IGGVLKY--------GIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG-----KTITIE-EL 513 (752)
T ss_pred HHCCCeEEEEecCCC---CCCeeee--------cCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-----CcCCHH-HH
Confidence 999999999999776 8888765 556555666778887888899999999886442 222222 22
Q ss_pred eEEEecEEEEccCC-CCCCCCCCCcccccCCCeeeee-e----------cCC-CCCCCCCCEEEEEeCCccHHHHHHHHH
Q 009224 194 RKVKCHSIVFATGA-TAKRLNLPREDEFWSRGISACA-I----------CDG-ASPLFKGQVLAVVGGGDTATEEAIYLT 260 (540)
Q Consensus 194 ~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~~-~----------~~~-~~~~~~~k~v~VvG~G~~a~e~a~~l~ 260 (540)
....||+||||||+ .|+.+++||.+.. ++.... + ... ......+++|+|||+|++|+|+|..+.
T Consensus 514 ~~~~ydavvlAtGa~~~~~l~ipG~~~~---gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~ 590 (752)
T PRK12778 514 EEEGFKGIFIASGAGLPNFMNIPGENSN---GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAK 590 (752)
T ss_pred hhcCCCEEEEeCCCCCCCCCCCCCCCCC---CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHH
Confidence 34669999999998 5898999997631 111110 0 000 112346899999999999999999999
Q ss_pred hcCCe-EEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------CCc
Q 009224 261 KFARH-VHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------TGE 322 (540)
Q Consensus 261 ~~g~~-v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~g~ 322 (540)
++|.+ |+++++++. +......++. +++.||++++++.+.++..+++|+++++.+.... +++
T Consensus 591 r~Ga~~Vtlv~r~~~~~~~~~~~e~~~-~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~ 669 (752)
T PRK12778 591 RLGAERVTIVYRRSEEEMPARLEEVKH-AKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGS 669 (752)
T ss_pred HcCCCeEEEeeecCcccCCCCHHHHHH-HHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCC
Confidence 99987 999998764 2323333333 5678999999999999988777788888775321 234
Q ss_pred eEEEEccEEEEecccccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 400 (540)
+.+++||.||+|+|++|+..++.. +++++++|+|.+|+++ +|+.|||||+|||+.++ .++..|+.+|+.||.+|++
T Consensus 670 ~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVfA~GD~~~g~-~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 670 TFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIYAGGDIVRGG-ATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred eEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEEEeCCccCCc-HHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999877643 5788889999999988 99999999999999864 7899999999999999999
Q ss_pred HHhcC
Q 009224 401 YLVNN 405 (540)
Q Consensus 401 ~l~~~ 405 (540)
+|.++
T Consensus 748 ~L~~~ 752 (752)
T PRK12778 748 YLSSK 752 (752)
T ss_pred HhccC
Confidence 99763
No 13
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=3.2e-38 Score=328.11 Aligned_cols=325 Identities=22% Similarity=0.283 Sum_probs=236.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-----------------cccCCCCCC----C
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-----------------VENFPGFPD----G 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-----------------~~~~~~~~~----~ 151 (540)
..+||+||||||||++||..|+++|++|+|||+.. .||.+....- ....++++. .
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~----~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL----LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVS 79 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc----cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCc
Confidence 35899999999999999999999999999999864 3343332211 012234321 2
Q ss_pred CChHHHHH-----------HHHHHHHHh-CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccc
Q 009224 152 ITGPDLMD-----------RMRRQAERW-GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 152 ~~~~~~~~-----------~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
....++.+ .+...+++. |++++.++...++ .+.+.+ ++..+.||+||||||++|+.|++||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~~v~v--~~~~~~~d~lViATGs~p~~p~i~G~~~ 155 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PNTVRV--GGETLRAKRIFINTGARAAIPPIPGLDE 155 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CCEEEE--CcEEEEeCEEEEcCCCCCCCCCCCCCCc
Confidence 33443332 233445555 8999988766543 344444 5678999999999999999999999764
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEE
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVH 294 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~ 294 (540)
.. +...... ......+++++|||+|++|+|+|..|++.|.+|+++++.+.+.+ ....+.+.+++.||+++
T Consensus 156 ~~---~~~~~~~--~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~ 230 (463)
T PRK06370 156 VG---YLTNETI--FSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVR 230 (463)
T ss_pred Cc---eEcchHh--hCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEE
Confidence 21 1111111 11113479999999999999999999999999999999887654 23455566788999999
Q ss_pred eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceE
Q 009224 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 295 ~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++++.++..++++. .+.+.. .+++.++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|+.||||
T Consensus 231 ~~~~V~~i~~~~~~~--~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l-~t~~~~Iy 305 (463)
T PRK06370 231 LNAECIRVERDGDGI--AVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQL-RTTNPGIY 305 (463)
T ss_pred eCCEEEEEEEcCCEE--EEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCC-cCCCCCEE
Confidence 999999998764321 233322 2344679999999999999999833 236788899999999998 89999999
Q ss_pred EccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 372 AAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 372 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|+|||++. +.....|..||+.||.+|..... ... ....|+.|++++ ||+++.+++. .+++....
T Consensus 306 AiGD~~~~-~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~--vG~te~~a~~~g~~~~~~~ 375 (463)
T PRK06370 306 AAGDCNGR-GAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLAR--VGMTEAEARKSGRRVLVGT 375 (463)
T ss_pred EeeecCCC-cccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEe--eeCCHHHHHHcCCCeEEEE
Confidence 99999986 47889999999999999964211 111 125589999999 9999988874 44544443
No 14
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.3e-38 Score=327.15 Aligned_cols=314 Identities=22% Similarity=0.287 Sum_probs=233.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec-----------cCcc----ccCCCCCC-----CCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT-----------TTEV----ENFPGFPD-----GIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~-----------~~~~----~~~~~~~~-----~~~ 153 (540)
.|||+||||||||++||..++++|++|+|+|+.. +||.+.. .... .+.+.+.. ...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~----~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR----VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc----cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 4899999999999999999999999999999853 4555442 1111 11111110 112
Q ss_pred hH-----------HHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccC
Q 009224 154 GP-----------DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWS 222 (540)
Q Consensus 154 ~~-----------~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~ 222 (540)
.. ++.+.++..+++.|++++.+++..++.+ .+.+..++..++||+||||||++|..|++||.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~ 155 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceec
Confidence 21 2334455567778999999998888753 4555445678999999999999999999998653111
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
.. +.......+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ ....+.+.+++.||++++++
T Consensus 156 -----~~--~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~ 228 (446)
T TIGR01424 156 -----SN--EAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQT 228 (446)
T ss_pred -----hH--HhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCC
Confidence 00 0000112478999999999999999999999999999999887654 23344556778899999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.++...+++ +.+.. .++.++++|.+|+|+|++|+++.+ ..+++++++|++.||+++ +|+.|||||+|
T Consensus 229 ~v~~i~~~~~~----~~v~~---~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~G 300 (446)
T TIGR01424 229 SLTSITKTDDG----LKVTL---SHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYS-RTSIPSIYAVG 300 (446)
T ss_pred EEEEEEEcCCe----EEEEE---cCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCC-ccCCCCEEEee
Confidence 99999865432 23322 123569999999999999999854 346788889999999999 89999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHHHH-h---cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVERYL-V---NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~~l-~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
||++. +..+..|..||+.||.+|.... . .... ...|+.|++++ ||++|+++++.
T Consensus 301 D~~~~-~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~--vG~te~~a~~~ 359 (446)
T TIGR01424 301 DVTDR-INLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGT--VGLTEEEAREK 359 (446)
T ss_pred ccCCC-ccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEE--EECCHHHHHhh
Confidence 99986 4688999999999999986311 1 1112 25588999999 99999988864
No 15
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=8.2e-38 Score=322.49 Aligned_cols=318 Identities=23% Similarity=0.303 Sum_probs=229.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----c--cCCCCCC----CCChHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----E--NFPGFPD----GITGPD 156 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~--~~~~~~~----~~~~~~ 156 (540)
.+||+||||||||++||..|+++|++|+|+|+...| |.|+..+...... . ...+++. .....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 589999999999999999999999999999985422 2233222211110 0 0112211 123333
Q ss_pred HH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC-CCCCcccccCCC
Q 009224 157 LM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRG 224 (540)
Q Consensus 157 ~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~-~ipg~~~~~~~~ 224 (540)
+. +.+...+++.|++++.+++...+ ++.+ ..++..+.||+||||||++|+.| ++||.+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v--~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~-- 155 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTV--EVNGRDYTAPHILIATGGKPSFPENIPGAELGTD-- 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEE--EECCEEEEeCEEEEecCCCCCCCCCCCCCceeEc--
Confidence 22 22445566779999999776543 3333 33667899999999999999988 8898653110
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
....... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.|++.||++++++.+
T Consensus 156 ---~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v 230 (450)
T TIGR01421 156 ---SDGFFAL--EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKP 230 (450)
T ss_pred ---HHHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 0000011 12478999999999999999999999999999999887654 2344555678899999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..+.++. ..+.+. ++ ...+++|.|++++|++||+.++ ..+++++++|++.||+++ +|+.|||||+|||
T Consensus 231 ~~i~~~~~~~-~~v~~~---~g-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~T~~p~IyAiGD~ 304 (450)
T TIGR01421 231 VKVEKTVEGK-LVIHFE---DG-KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQ-NTNVPGIYALGDV 304 (450)
T ss_pred EEEEEeCCce-EEEEEC---CC-cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCC-cCCCCCEEEEEec
Confidence 9998754331 123332 23 2569999999999999999864 246888999999999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHh-----cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERYLV-----NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
++. +..+..|..+|+.||.+|..... .... ...|+.|++++ ||++++++++.
T Consensus 305 ~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~--vGlte~~a~~~ 362 (450)
T TIGR01421 305 VGK-VELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGT--IGLTEKEAIEK 362 (450)
T ss_pred CCC-cccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEE--EeCCHHHHHhh
Confidence 986 36788999999999999863211 1112 25699999999 99999988654
No 16
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=6.4e-38 Score=324.91 Aligned_cols=317 Identities=24% Similarity=0.328 Sum_probs=231.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-------CCCCcceeeccCcc----cc---CCCCC---CCCChHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-------GGVPGGQLMTTTEV----EN---FPGFP---DGITGPD 156 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-------~~~~gg~~~~~~~~----~~---~~~~~---~~~~~~~ 156 (540)
.+||+||||||||++||..|+++|++|+|||+... +|.|+..+...... +. ..++. .......
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 58999999999999999999999999999998532 22333322221110 11 01111 1122333
Q ss_pred HHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCe
Q 009224 157 LMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGI 225 (540)
Q Consensus 157 ~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~ 225 (540)
+.+ .+...+++.|++++.++++.++. +.+.+ ++..++||+||||||++|+.|++||.+....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~--~g~~~~~d~lViATGs~p~~p~i~g~~~~~~--- 156 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV--NGERYTADHILIATGGRPSIPDIPGAEYGIT--- 156 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE--CCEEEEeCEEEEecCCCCCCCCCCCcceeEc---
Confidence 222 23344566799999998887763 34444 6678999999999999999999998653211
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEE
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETV 300 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~ 300 (540)
...... ....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.. ....+.+.+++.||++++++++.
T Consensus 157 --~~~~~~--~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~ 232 (450)
T PRK06116 157 --SDGFFA--LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPK 232 (450)
T ss_pred --hhHhhC--ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEE
Confidence 100000 112478999999999999999999999999999999876544 23344556788999999999999
Q ss_pred EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 301 ~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
++..++++.+ .+.+ .+ ++++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|++|||||+|||+
T Consensus 233 ~i~~~~~g~~-~v~~---~~--g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~ 305 (450)
T PRK06116 233 AVEKNADGSL-TLTL---ED--GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQ-NTNVPGIYAVGDVT 305 (450)
T ss_pred EEEEcCCceE-EEEE---cC--CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCC-CcCCCCEEEEeecC
Confidence 9987654322 1332 12 3568999999999999999853 346788899999999998 89999999999999
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHh-c----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLV-N----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~-~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+. +.....|+.||+.||.+|..... . ... ...|+.|++++ ||++++++++.
T Consensus 306 ~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~--vGlte~~a~~~ 362 (450)
T PRK06116 306 GR-VELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGT--VGLTEEEAREQ 362 (450)
T ss_pred CC-cCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEE--eeCCHHHHHHh
Confidence 76 46889999999999999964211 0 111 25588999999 99999888764
No 17
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=1e-38 Score=353.42 Aligned_cols=343 Identities=22% Similarity=0.316 Sum_probs=262.7
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc----cCcccCCcccEEEECCCHHHHHHHHHHHHc
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA----LSSAEKSVENVVIIGSGPAGYTAAIYAARA 116 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vvVIGgG~aGl~aA~~l~~~ 116 (540)
|++..++..|+. ...|...|+++..+.|+.|..+++++.+.... ......+.++|+|||||||||+||..|+++
T Consensus 375 p~p~~~grvCp~--~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~ 452 (1006)
T PRK12775 375 IFPSICGRVCPQ--ETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKY 452 (1006)
T ss_pred ChHHHhcCcCCC--CCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence 788888999943 33578888888888999999999997764211 112233568999999999999999999999
Q ss_pred CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEE
Q 009224 117 NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKV 196 (540)
Q Consensus 117 g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~ 196 (540)
|++|+|||+.+. +||.+.+ ++|.+..+.++.+...+.++++|++++.+.+... .+++..-....
T Consensus 453 G~~VtV~E~~~~---~GG~l~~--------gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~-----~~~~~~l~~~~ 516 (1006)
T PRK12775 453 GVDVTVYEALHV---VGGVLQY--------GIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK-----TFTVPQLMNDK 516 (1006)
T ss_pred CCcEEEEecCCC---Ccceeec--------cCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC-----ccCHHHHhhcc
Confidence 999999999877 8888764 5666667788999999999999999999865432 22222100124
Q ss_pred EecEEEEccCCC-CCCCCCCCcccccCCCeeee-eecC------C------CCCCCCCCEEEEEeCCccHHHHHHHHHhc
Q 009224 197 KCHSIVFATGAT-AKRLNLPREDEFWSRGISAC-AICD------G------ASPLFKGQVLAVVGGGDTATEEAIYLTKF 262 (540)
Q Consensus 197 ~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~-~~~~------~------~~~~~~~k~v~VvG~G~~a~e~a~~l~~~ 262 (540)
.||+||||||+. |+.+++||.+. .++... .+.. . ......+++|+|||||++|+|+|..+.++
T Consensus 517 ~yDaViIATGa~~pr~l~IpG~~l---~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rl 593 (1006)
T PRK12775 517 GFDAVFLGVGAGAPTFLGIPGEFA---GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRL 593 (1006)
T ss_pred CCCEEEEecCCCCCCCCCCCCcCC---CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHc
Confidence 699999999995 89899999753 111111 1000 0 01124689999999999999999999999
Q ss_pred CC-eEEEEEeccccc--ccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc--------------CCceEE
Q 009224 263 AR-HVHLLVRREQLR--ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--------------TGEESV 325 (540)
Q Consensus 263 g~-~v~li~~~~~~~--~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--------------~g~~~~ 325 (540)
|. .|+++.|+.... .....++ .+++.||++++++.+.++..+++|+++++.+.... +++..+
T Consensus 594 Ga~~Vtiv~rr~~~em~a~~~e~~-~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~ 672 (1006)
T PRK12775 594 GAPTVRCVYRRSEAEAPARIEEIR-HAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD 672 (1006)
T ss_pred CCCEEEEEeecCcccCCCCHHHHH-HHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence 87 588888765332 2222233 35678999999999999987777888888775321 234467
Q ss_pred EEccEEEEecccccCcccccc--ceeccCCCCEEeCC----CccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 326 LEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEE----GTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 326 i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~----~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+++|.||+|+|+.|++.++.. ++.++.+|.+.+|+ ..++|++|||||+||++.++ .++..|+.+|+.||.+|+
T Consensus 673 i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~-~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 673 LECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG-ATVILAMGAGRRAARSIA 751 (1006)
T ss_pred EEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999877643 57788889999997 34489999999999999874 788999999999999999
Q ss_pred HHHhcCc
Q 009224 400 RYLVNNN 406 (540)
Q Consensus 400 ~~l~~~~ 406 (540)
++|.+..
T Consensus 752 ~~L~~~~ 758 (1006)
T PRK12775 752 TYLRLGK 758 (1006)
T ss_pred HHHhcCC
Confidence 9998764
No 18
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=2e-38 Score=328.57 Aligned_cols=340 Identities=25% Similarity=0.366 Sum_probs=255.8
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc---cc--cCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV---DA--LSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
|++..++..|+.. ..|...|.+.....+..++.++++..+.. .. ...++...++|+|||||+||+++|..|++
T Consensus 84 p~~~~~g~vc~~~--~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l~~ 161 (457)
T PRK11749 84 PLPAVCGRVCPQE--RLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLAR 161 (457)
T ss_pred CchhhhcCcCCCc--cCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHHHh
Confidence 6888888888544 35778888887788899999988655421 11 12334567899999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeE
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK 195 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~ 195 (540)
+|++|+|+|+.+. +||.+.+ ++|.+....++..+..+.+++.|++++.++.... .+++ +...
T Consensus 162 ~g~~V~lie~~~~---~gG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-----~v~~--~~~~ 223 (457)
T PRK11749 162 KGYDVTIFEARDK---AGGLLRY--------GIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-----DITL--DELR 223 (457)
T ss_pred CCCeEEEEccCCC---CCcEeec--------cCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-----ccCH--HHHH
Confidence 9999999999887 7777654 3344445567888888889999999998865421 1111 1223
Q ss_pred EEecEEEEccCCC-CCCCCCCCcccccCCCeeee----eecCC---CCCCCCCCEEEEEeCCccHHHHHHHHHhcCC-eE
Q 009224 196 VKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC----AICDG---ASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-HV 266 (540)
Q Consensus 196 ~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~----~~~~~---~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-~v 266 (540)
+.||+||+|||+. ++.+++||.+. .++... ..... ......+++|+|||+|++|+|+|..+.+.|. +|
T Consensus 224 ~~~d~vvlAtGa~~~~~~~i~G~~~---~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~V 300 (457)
T PRK11749 224 AGYDAVFIGTGAGLPRFLGIPGENL---GGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESV 300 (457)
T ss_pred hhCCEEEEccCCCCCCCCCCCCccC---CCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 6799999999985 77778888653 111111 11110 1122368999999999999999999999987 89
Q ss_pred EEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc--------------CCceEEEEccE
Q 009224 267 HLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--------------TGEESVLEAKG 330 (540)
Q Consensus 267 ~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--------------~g~~~~i~~D~ 330 (540)
++++++.. +.......+ .+++.||++++++.+.++..+++ .++++.+.... +++++++++|.
T Consensus 301 tlv~~~~~~~~~~~~~~~~-~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~ 378 (457)
T PRK11749 301 TIVYRRGREEMPASEEEVE-HAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADL 378 (457)
T ss_pred EEeeecCcccCCCCHHHHH-HHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCE
Confidence 99998654 222333333 46788999999999999987653 34556654321 34567899999
Q ss_pred EEEecccccCccccc--cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 331 LFYGIGHSPNSQLLQ--GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 331 vi~a~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
||+++|++|+..++. .++.++++|++.+|+..++|+.|+|||+|||+.+ .+.+..|+.+|+.||.+|.++|.++.
T Consensus 379 vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~-~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 379 VIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG-AATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred EEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC-chHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999987764 3577888999999984449999999999999976 47889999999999999999998753
No 19
>PLN02546 glutathione reductase
Probab=100.00 E-value=4.8e-38 Score=328.09 Aligned_cols=319 Identities=21% Similarity=0.258 Sum_probs=235.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-----------------CCCCCCcceeeccCcccc------CCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-----------------QAGGVPGGQLMTTTEVEN------FPGF 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-----------------~~~~~~gg~~~~~~~~~~------~~~~ 148 (540)
...|||+|||||+||+.||..|+++|++|+|+|+. +.||.|.+.+........ ..++
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34589999999999999999999999999999961 233445555543322110 0122
Q ss_pred C----CCCChHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 149 P----DGITGPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 149 ~----~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
. ..+++.. +..++...+++.|++++.++++.++.. . +..++..+.||+||||||++|..|+
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~--V~v~G~~~~~D~LVIATGs~p~~P~ 232 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--T--VDVDGKLYTARNILIAVGGRPFIPD 232 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--E--EEECCEEEECCEEEEeCCCCCCCCC
Confidence 1 1123322 233444556778999999998888753 3 3336778999999999999999999
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
+||.+..+ .+..... ....+++++|||+|++|+|+|..|.++|.+|+++.+.+.+++ ....+.+.|++
T Consensus 233 IpG~~~v~-----~~~~~l~--~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~ 305 (558)
T PLN02546 233 IPGIEHAI-----DSDAALD--LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSL 305 (558)
T ss_pred CCChhhcc-----CHHHHHh--ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHH
Confidence 99965321 1111111 113578999999999999999999999999999999887644 23445566788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCcccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKT 365 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t 365 (540)
.||++++++.+.++....++. +.+.. ++++...+|.||+++|++|+++++ . .+++++++|+|.||+++ +|
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~---v~v~~---~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l-~T 378 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGS---LSLKT---NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS-RT 378 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCE---EEEEE---CCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc-ee
Confidence 999999999999998654432 22322 233445689999999999999864 2 36788889999999998 89
Q ss_pred CCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 366 SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 366 ~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
++|||||+|||++. +.....|..+|+.+|.+|...-. .... ...|+.|++++ ||++|+++++.
T Consensus 379 s~p~IYAaGDv~~~-~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~--VGlte~eA~~~ 446 (558)
T PLN02546 379 SVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQ--VGLTEEQAIEE 446 (558)
T ss_pred CCCCEEEeeccCCC-cccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhh--ccCCHHHHHHc
Confidence 99999999999986 47889999999999999864211 0111 25599999999 99999988764
No 20
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=7.4e-38 Score=325.64 Aligned_cols=328 Identities=26% Similarity=0.338 Sum_probs=233.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------CCcceeeccCccccCC-----CC---CCCCChH----
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEVENFP-----GF---PDGITGP---- 155 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------~~gg~~~~~~~~~~~~-----~~---~~~~~~~---- 155 (540)
+||+||||||||++||..|+++|++|+|||+...|+ .|...+.......++. ++ .......
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 699999999999999999999999999999865322 2222222111111110 11 0011222
Q ss_pred ---HHHHH-----HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeee
Q 009224 156 ---DLMDR-----MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISA 227 (540)
Q Consensus 156 ---~~~~~-----~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~ 227 (540)
++... +...+++.+++++.+++..++ .+.+.+..+...+.||+||||||++|+.|++||.+... +..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~---~~~ 155 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAG---YLT 155 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCc---eEC
Confidence 22222 234567779999999887655 34444432224689999999999999999999976531 111
Q ss_pred eeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEE
Q 009224 228 CAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 228 ~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
...... ....+++++|||+|.+|+|+|..|+++|.+|+++++.+.+.+ ....+.+.+++.||++++++++.++
T Consensus 156 ~~~~~~--~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 156 SEEALA--LDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred chhhhC--cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 111111 112468999999999999999999999999999999887654 2345556678899999999999999
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
..+++ ...+.+.. ++.+.++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|+.|||||+|||++.
T Consensus 234 ~~~~~--~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~VyAiGD~~~~ 308 (463)
T TIGR02053 234 SVRGG--GKIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETL-RTSNPGIYAAGDVTGG 308 (463)
T ss_pred EEcCC--EEEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCc-cCCCCCEEEeeecCCC
Confidence 87543 12233322 2345679999999999999999833 236778889999999998 8999999999999987
Q ss_pred cchhhhhhhchHHHHHHHHHHHHhc----C-cceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 380 EWRQAVTAAGSGCIAALSVERYLVN----N-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 380 ~~~~~~~A~~~g~~aa~~i~~~l~~----~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+..+..|..||+.||.+|...... . -....|+.|++++ ||++++++++ .+++...
T Consensus 309 -~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~ 369 (463)
T TIGR02053 309 -LQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVAS--VGLTEAEAQKAGIECDCR 369 (463)
T ss_pred -cccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEE--EeCCHHHHHhcCCCeEEE
Confidence 478899999999999999643111 1 1235689999999 9999988875 3554443
No 21
>PLN02507 glutathione reductase
Probab=100.00 E-value=4.1e-38 Score=327.64 Aligned_cols=320 Identities=23% Similarity=0.271 Sum_probs=232.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC------CCCCCcceeec-----------cCcc----cc--CCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ------AGGVPGGQLMT-----------TTEV----EN--FPGF 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~------~~~~~gg~~~~-----------~~~~----~~--~~~~ 148 (540)
...|||+||||||||+.||..|+++|.+|+|||+.. ..+..||.+.. .... .. ..++
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 446899999999999999999999999999999620 00114444433 1111 00 0011
Q ss_pred C----CCCChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCe--EEEecEEEEccCCCCC
Q 009224 149 P----DGITGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 149 ~----~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~ 210 (540)
. ..++..++.++ +...+++.+++++.+++..++.. .+.|.. +++ .+.||+||||||++|.
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~--~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPN--EVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 1 12333333333 22345567999999999888754 455543 333 5889999999999999
Q ss_pred CCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHH
Q 009224 211 RLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRV 285 (540)
Q Consensus 211 ~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~ 285 (540)
.|++||.+.... ........ ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.
T Consensus 181 ~p~ipG~~~~~~-----~~~~~~l~--~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~ 253 (499)
T PLN02507 181 RPNIPGKELAIT-----SDEALSLE--ELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN 253 (499)
T ss_pred CCCCCCccceec-----hHHhhhhh--hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHH
Confidence 999998643211 11111111 2378999999999999999999999999999999876543 33445556
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCc
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGT 362 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~ 362 (540)
|++.||++++++++.++...+++ +.+.. +++.++++|.|++++|++|++.++. .+++++++|+|.||+++
T Consensus 254 l~~~GI~i~~~~~V~~i~~~~~~----~~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~ 326 (499)
T PLN02507 254 LEGRGINLHPRTNLTQLTKTEGG----IKVIT---DHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS 326 (499)
T ss_pred HHhCCCEEEeCCEEEEEEEeCCe----EEEEE---CCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC
Confidence 78899999999999999865432 33332 2345699999999999999998742 36788889999999999
Q ss_pred cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 363 AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 363 ~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|+.|||||+|||++. ......|..||+.||.+|...-. ... ....|+.|+++. ||++|+++++.
T Consensus 327 -~Ts~p~IyAiGDv~~~-~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~--vGlte~ea~~~ 396 (499)
T PLN02507 327 -RTNIPSIWAIGDVTNR-INLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSV--VGLSEEEAVEQ 396 (499)
T ss_pred -cCCCCCEEEeeEcCCC-CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEE--EeCCHHHHHhc
Confidence 8999999999999986 46889999999999999853111 011 225588999999 99999988864
No 22
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=6.6e-38 Score=337.68 Aligned_cols=336 Identities=22% Similarity=0.262 Sum_probs=250.2
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc-----cc-Cc-ccCCcccEEEECCCHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD-----AL-SS-AEKSVENVVIIGSGPAGYTAAIY 112 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-~~~~~~~vvVIGgG~aGl~aA~~ 112 (540)
-|++..++..|++ .|...|+++..+.|++|..++++..+... .. .+ ...+.++|+||||||||++||..
T Consensus 482 nPlP~icGrVCph----~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~ 557 (1019)
T PRK09853 482 NALPAITGHICDH----QCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYF 557 (1019)
T ss_pred CChhhHhhCcCCc----hhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHH
Confidence 3788899999976 46777788888899999999998865310 11 11 23567899999999999999999
Q ss_pred HHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC
Q 009224 113 AARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG 192 (540)
Q Consensus 113 l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~ 192 (540)
|+++|++|+|+|+.+. +||++.. ++|.+..+.++.++..+.+++.|++++.+....++ +. +
T Consensus 558 Lar~G~~VtV~Ek~~~---~GG~lr~--------~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~-------le-~ 618 (1019)
T PRK09853 558 LARAGHPVTVFEREEN---AGGVVKN--------IIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLT-------VE-Q 618 (1019)
T ss_pred HHHcCCeEEEEecccc---cCcceee--------ecccccccHHHHHHHHHHHHHcCCEEEeCceeEEE-------hh-h
Confidence 9999999999999887 8888764 34454556677777788888999999998544332 11 2
Q ss_pred CeEEEecEEEEccCCC-CCCCCCCCcccccCCCeeeeeec-CCCCCCCCCCEEEEEeCCccHHHHHHHHHhc-C-CeEEE
Q 009224 193 ERKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACAIC-DGASPLFKGQVLAVVGGGDTATEEAIYLTKF-A-RHVHL 268 (540)
Q Consensus 193 ~~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~~~-~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~-g-~~v~l 268 (540)
.....||+||||||++ +..+++||.+......+...... ........+++|+|||||++|+|+|..+.+. | .+|++
T Consensus 619 L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTL 698 (1019)
T PRK09853 619 LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV 698 (1019)
T ss_pred heeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEE
Confidence 2345699999999997 45567888652111111111111 1112234689999999999999999998887 4 48999
Q ss_pred EEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE-----------EccCCceEEEEccEEEEec
Q 009224 269 LVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR-----------KVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 269 i~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~-----------~~~~g~~~~i~~D~vi~a~ 335 (540)
++|+.. +......+++.+ +.||++++...+.++..+ +++....+. ....+++.++++|.||+|+
T Consensus 699 VyRr~~~~MPA~~eEle~Al-eeGVe~~~~~~p~~I~~d--G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAI 775 (1019)
T PRK09853 699 VYRRTKQEMPAWREEYEEAL-EDGVEFKELLNPESFDAD--GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAI 775 (1019)
T ss_pred EEccCcccccccHHHHHHHH-HcCCEEEeCCceEEEEcC--CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECC
Confidence 999752 333455555554 479999999999998643 333211110 0123456789999999999
Q ss_pred ccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 336 GHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 336 G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
|++|++.++.. +++++++|++.||+.+ +|+.|||||+|||+..+ ..+..|+.+|+.||.+|...+.
T Consensus 776 G~~Pntelle~~GL~ld~~G~I~VDetl-qTs~pgVFAaGD~a~Gp-~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 776 GEQVDTELLKANGIPLDKKGWPVVDANG-ETSLTNVYMIGDVQRGP-STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCcCChhHHHhcCccccCCCCEEeCCCc-ccCCCCEEEEeccccCc-hHHHHHHHHHHHHHHHHhhhcC
Confidence 99999988753 6778889999999887 89999999999999764 7899999999999999988765
No 23
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2e-37 Score=322.51 Aligned_cols=330 Identities=25% Similarity=0.375 Sum_probs=235.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------CCcceeeccCccc----cC--CCCC---CCCChHH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEVE----NF--PGFP---DGITGPD 156 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------~~gg~~~~~~~~~----~~--~~~~---~~~~~~~ 156 (540)
..+||+||||||||++||..|+++|++|+|+|+...|| .|+..+....... .. .++. ....+.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKK 82 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHH
Confidence 35899999999999999999999999999999865322 2322222211110 00 0111 1234444
Q ss_pred HHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCCCCCCCCCcccccCC
Q 009224 157 LMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATAKRLNLPREDEFWSR 223 (540)
Q Consensus 157 ~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~ 223 (540)
+.++ +...+++.|++++.++++.++. +.+++.. ++..++||+||||||++|..| ||.+. ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg~~~-~~~ 157 (462)
T PRK06416 83 VQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDP--NTVRVMTEDGEQTYTAKNIILATGSRPREL--PGIEI-DGR 157 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecCCCcEEEEeCEEEEeCCCCCCCC--CCCCC-CCC
Confidence 4444 4445667899999998887764 3455542 246899999999999998754 45432 111
Q ss_pred CeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCce
Q 009224 224 GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTE 298 (540)
Q Consensus 224 ~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~ 298 (540)
.+........ ....+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||+++++++
T Consensus 158 ~v~~~~~~~~--~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~ 235 (462)
T PRK06416 158 VIWTSDEALN--LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAK 235 (462)
T ss_pred eEEcchHhhC--ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 1222211111 113478999999999999999999999999999999887654 344556667889999999999
Q ss_pred EEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccc
Q 009224 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375 (540)
Q Consensus 299 v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD 375 (540)
+.++..+++ .+.+.....+..+++++|.+|+|+|.+|++.++ ..+++++ +|++.||+++ +|+.|+|||+||
T Consensus 236 V~~i~~~~~----~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~-~t~~~~VyAiGD 309 (462)
T PRK06416 236 AKKVEQTDD----GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQL-RTNVPNIYAIGD 309 (462)
T ss_pred EEEEEEeCC----EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCC-ccCCCCEEEeee
Confidence 999987643 233322222344679999999999999999876 3367777 8999999999 799999999999
Q ss_pred cCCCcchhhhhhhchHHHHHHHHHHHHhc---C-cceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 376 VQDHEWRQAVTAAGSGCIAALSVERYLVN---N-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 376 ~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|+.. +..+..|..||+.||.+|...... . .....|+.|+++. +|++++++++ .+++....
T Consensus 310 ~~~~-~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~--vG~te~~a~~~g~~~~~~~ 374 (462)
T PRK06416 310 IVGG-PMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVAS--VGLTEAKAKEEGFDVKVVK 374 (462)
T ss_pred cCCC-cchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEE--EeCCHHHHHhcCCCeEEEE
Confidence 9986 368899999999999999752211 1 1225689999999 9999988876 34544443
No 24
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=9.1e-38 Score=334.49 Aligned_cols=345 Identities=26% Similarity=0.339 Sum_probs=257.4
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
.|++..++..|+.+ |...|+++..+.++.+..++++..+.... +.......++|+||||||||+++|..|
T Consensus 137 ~p~p~~~grvC~~~----Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 137 IPLPGILGRICPAP----CEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred CCccceeeCCcCch----hhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 37888999999764 66777777778899999999987643111 112234568999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
++.|++|+|+|+.+. +||++.+ ++|.+..+.++.+...+.+.++|++++.+++..++. ++ +.
T Consensus 213 a~~G~~Vtv~e~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv-----~~--~~ 274 (652)
T PRK12814 213 LRKGHDVTIFDANEQ---AGGMMRY--------GIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI-----TL--EE 274 (652)
T ss_pred HHCCCcEEEEecCCC---CCceeee--------cCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc-----CH--HH
Confidence 999999999999887 8888865 445555667778888888899999999886543321 11 11
Q ss_pred eEEEecEEEEccCCCC-CCCCCCCcccccC-CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEE
Q 009224 194 RKVKCHSIVFATGATA-KRLNLPREDEFWS-RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLV 270 (540)
Q Consensus 194 ~~~~~d~lviAtG~~~-~~~~ipg~~~~~~-~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~ 270 (540)
....||+||+|||+.+ ..+++||.+.... .................+++|+|||+|++|+|+|..+.++|. +|++++
T Consensus 275 ~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~ 354 (652)
T PRK12814 275 LQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354 (652)
T ss_pred HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEee
Confidence 1235999999999975 5678898653211 111111111111223578999999999999999999999986 699999
Q ss_pred eccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCC-ceeeEEEEEc------------cCCceEEEEccEEEEec
Q 009224 271 RREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKV------------DTGEESVLEAKGLFYGI 335 (540)
Q Consensus 271 ~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~------------~~g~~~~i~~D~vi~a~ 335 (540)
++.. +......+.+.+ +.||+++++..+.++..++++ .++.+.+... .+++...+++|.||+++
T Consensus 355 r~~~~~mpa~~~ei~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~Ai 433 (652)
T PRK12814 355 RRTREEMPANRAEIEEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAI 433 (652)
T ss_pred ecCcccCCCCHHHHHHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECC
Confidence 8763 333444455544 579999999999998765432 1222223221 12445679999999999
Q ss_pred ccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 336 GHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 336 G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
|+.|++.++.. +++++.+|++.+|+.+++|+.|||||+||++.. +.++..|+.+|+.||.+|.++|.++.+.
T Consensus 434 G~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g-~~~v~~Ai~~G~~AA~~I~~~L~g~~~~ 506 (652)
T PRK12814 434 GQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTG-ADIAINAVEQGKRAAHAIDLFLNGKPVT 506 (652)
T ss_pred CCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCC-chHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999988754 678888899999987669999999999999986 3788999999999999999999987653
No 25
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=5e-37 Score=318.51 Aligned_cols=325 Identities=21% Similarity=0.318 Sum_probs=230.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc----cc--CCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV----EN--FPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~----~~--~~~~~---~~~ 152 (540)
..+||+||||||||+.||..|+++|++|+|||+.+. +||.+.... .. .. ..++. ...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~---~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST---LGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKI 79 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc---ccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 358999999999999999999999999999998643 444432211 10 00 01111 112
Q ss_pred ChHHHHHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCC-CCCCCc
Q 009224 153 TGPDLMDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKR-LNLPRE 217 (540)
Q Consensus 153 ~~~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~-~~ipg~ 217 (540)
....+.++. ...+++.|++++.+++..++ .+.+.+.. ++ ..+.||+||||||++|+. |.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 157 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHD 157 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCC
Confidence 333333322 23355669999999887765 45566654 33 479999999999999974 445553
Q ss_pred ccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeE
Q 009224 218 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNIT 292 (540)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~ 292 (540)
... +.... +.......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.|++. |+
T Consensus 158 ~~~----v~~~~--~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~ 230 (471)
T PRK06467 158 DPR----IWDST--DALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FN 230 (471)
T ss_pred CCc----EEChH--HhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eE
Confidence 221 11111 1111113468999999999999999999999999999999887765 233445556667 99
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCc
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEG 369 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~ 369 (540)
+++++.+.+++..+++ + .+.+.+ .+++.+++++|.||+++|++|+++++. .+++++++|+|.||+++ +|+.|+
T Consensus 231 i~~~~~v~~i~~~~~~-~-~v~~~~-~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~-~t~~p~ 306 (471)
T PRK06467 231 IMLETKVTAVEAKEDG-I-YVTMEG-KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQC-RTNVPH 306 (471)
T ss_pred EEcCCEEEEEEEcCCE-E-EEEEEe-CCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCc-ccCCCC
Confidence 9999999999865432 1 233322 123346799999999999999998653 36888999999999998 899999
Q ss_pred eEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 370 VFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 370 iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
|||+|||++.+ ..+..|..+|+.||.+|...... .. ....|+.|++++ ||++|+++++ .+++..
T Consensus 307 VyAiGDv~~~~-~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~--vGlte~ea~~~g~~~~~ 375 (471)
T PRK06467 307 IFAIGDIVGQP-MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAW--VGLTEKEAKEEGIEYET 375 (471)
T ss_pred EEEehhhcCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeE--EECCHHHHHhcCCCeEE
Confidence 99999999864 68899999999999999642111 11 124599999999 9999988875 344333
No 26
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.7e-37 Score=317.61 Aligned_cols=324 Identities=18% Similarity=0.232 Sum_probs=233.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccC----CCCCCCCChH-------HHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENF----PGFPDGITGP-------DLMDRMR 162 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~ 162 (540)
.+||+||||||||++||..|+++|++|+|||+.+. ..||.+......... ... ...... ++.++++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~--~~GG~~~~~gcip~k~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA--MYGGTCINIGCIPTKTLVHDAQ-QHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC--ccceeEeeccccchHHHHHHhc-cCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998642 146666432211000 000 001111 1112221
Q ss_pred ----HHHHH-hCCEEEEeeEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC
Q 009224 163 ----RQAER-WGAELHQEDVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS 235 (540)
Q Consensus 163 ----~~~~~-~~v~~~~~~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~ 235 (540)
..+.+ .+++++.+++..++. +.+.|.. ++ ..+.||+||||||++|..|++||.+... ++..+......
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~--~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~--~v~~~~~~~~~- 154 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINN--HSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTP--GVYDSTGLLNL- 154 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecC--CEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCC--CEEChhHhhcc-
Confidence 12233 389999998888874 4555554 34 3699999999999999999999975422 12222211111
Q ss_pred CCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 236 PLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 236 ~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+++
T Consensus 155 -~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~--- 230 (441)
T PRK08010 155 -KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHEN--- 230 (441)
T ss_pred -cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC---
Confidence 13578999999999999999999999999999999887654 234455567889999999999999987643
Q ss_pred eeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhh
Q 009224 311 SGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTA 387 (540)
Q Consensus 311 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A 387 (540)
.+.+.. .+ .++++|.+++|+|.+|++.++. .+++++++|+|.||+++ +|+.|||||+|||++. +...+.|
T Consensus 231 -~v~v~~---~~-g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~-~~~~~~a 303 (441)
T PRK08010 231 -QVQVHS---EH-AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL-HTTADNIWAMGDVTGG-LQFTYIS 303 (441)
T ss_pred -EEEEEE---cC-CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecCCC-ccchhHH
Confidence 233432 11 2488999999999999998643 36788889999999998 8999999999999997 4788999
Q ss_pred hchHHHHHHHHHHHHhc-----Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 388 AGSGCIAALSVERYLVN-----NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 388 ~~~g~~aa~~i~~~l~~-----~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
..+|+.++.++...... ... ...|+.|++++ ||++|+++++ .+++....
T Consensus 304 ~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~--vGlte~~a~~~g~~~~~~~ 359 (441)
T PRK08010 304 LDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSR--VGMTEEQARESGADIQVVT 359 (441)
T ss_pred HHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCcee--eeCCHHHHHHcCCCeEEEE
Confidence 99999999998632110 111 25599999999 9999988875 34444433
No 27
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=2e-37 Score=321.45 Aligned_cols=339 Identities=24% Similarity=0.304 Sum_probs=253.5
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..|+..|+.+ |...|+++..+.|+.|..++++..+.... ........++|+|||||+||+++|..|+
T Consensus 88 p~~~~~g~vC~~~----Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 88 NFPEFTGRVCPAP----CEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred ChhHHhcCcCCch----hHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 7888999999766 67778888888999999999987754211 1122345689999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|||+.+. +||.+.+ ++|.+..+.++.....+.+.++|++++.++....+... +..
T Consensus 164 ~~G~~V~vie~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~-------~~~ 225 (471)
T PRK12810 164 RAGHKVTVFERADR---IGGLLRY--------GIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITA-------EEL 225 (471)
T ss_pred hCCCcEEEEecCCC---CCceeee--------cCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCH-------HHH
Confidence 99999999999887 8887764 45555556677777778889999999988655432111 112
Q ss_pred EEEecEEEEccCCC-CCCCCCCCcccccCCCeeeee-e--------cCC---CCCCCCCCEEEEEeCCccHHHHHHHHHh
Q 009224 195 KVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACA-I--------CDG---ASPLFKGQVLAVVGGGDTATEEAIYLTK 261 (540)
Q Consensus 195 ~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~-~--------~~~---~~~~~~~k~v~VvG~G~~a~e~a~~l~~ 261 (540)
...||+||+|||+. ++.+.+||.+. .++.... + ... ......+++|+|||+|++|+|+|..+.+
T Consensus 226 ~~~~d~vvlAtGa~~~~~l~ipG~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~ 302 (471)
T PRK12810 226 LAEYDAVFLGTGAYKPRDLGIPGRDL---DGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIR 302 (471)
T ss_pred HhhCCEEEEecCCCCCCcCCCCCccC---CCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHH
Confidence 35799999999997 77888998653 2222210 0 000 0012468999999999999999998888
Q ss_pred cCC-eEEEEEecccccccH-----------HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------C
Q 009224 262 FAR-HVHLLVRREQLRASR-----------AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------T 320 (540)
Q Consensus 262 ~g~-~v~li~~~~~~~~~~-----------~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------~ 320 (540)
.|. +|+.+.+.+...... .+..+.+++.||++++++.++++..+ +++++++.+.... .
T Consensus 303 ~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~ 381 (471)
T PRK12810 303 QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVE 381 (471)
T ss_pred cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccC
Confidence 875 788666544322111 01223356789999999999999753 4677777765322 2
Q ss_pred CceEEEEccEEEEecccccCc-ccccc-ceeccCCCCEEeC-CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNS-QLLQG-QVELDSSGYVIVE-EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS 397 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~-~~~~~-~~~~~~~g~i~vd-~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~ 397 (540)
++.+++++|.||+|+|++|+. .++.. +++++++|++.+| +.+ +|+.|||||+|||++++ ..+..|+.+|+.||.+
T Consensus 382 g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~-~Ts~~gVfa~GD~~~g~-~~~~~Av~~G~~AA~~ 459 (471)
T PRK12810 382 GSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAY-QTSNPKVFAAGDMRRGQ-SLVVWAIAEGRQAARA 459 (471)
T ss_pred CceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcc-cCCCCCEEEccccCCCc-hhHHHHHHHHHHHHHH
Confidence 445789999999999999985 35543 5778888999998 566 89999999999999863 6788999999999999
Q ss_pred HHHHHhcCcc
Q 009224 398 VERYLVNNNL 407 (540)
Q Consensus 398 i~~~l~~~~~ 407 (540)
|.++|.++..
T Consensus 460 i~~~L~g~~~ 469 (471)
T PRK12810 460 IDAYLMGSTA 469 (471)
T ss_pred HHHHHhcCCC
Confidence 9999987654
No 28
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.2e-37 Score=322.38 Aligned_cols=317 Identities=25% Similarity=0.310 Sum_probs=232.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc------------------ccCC--CCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV------------------ENFP--GFPDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~------------------~~~~--~~~~~~ 152 (540)
..+||+||||||||++||..|+++|++|+|||+.+. .||.+...... ..+. ..+...
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~---~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN---VGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRI 80 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc---ccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCcc
Confidence 458999999999999999999999999999998654 55554332110 0010 111223
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCcc
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRED 218 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~ 218 (540)
+..++.+ .+...+++.+++++.+++..++. +.+.+.. ++ ..+.||+||||||+.|..|++++.+
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~ 158 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFD 158 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCC
Confidence 3443333 23445667799999998877764 4566654 33 3689999999999999888776643
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
. ..+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++
T Consensus 159 ~---~~v~~~~~~~~~--~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 159 H---PRIYDSDSILSL--DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred C---CeEEcHHHhhch--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEE
Confidence 2 222222211111 13579999999999999999999999999999999987765 2334445577889999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
++++.+.++..+++ ++.+.. .++ .++++|.|++|+|++|++.++ ..+++++++|++.||+++ +|+.|||
T Consensus 234 ~~~~~v~~i~~~~~----~~~v~~-~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~I 305 (461)
T PRK05249 234 RHNEEVEKVEGGDD----GVIVHL-KSG--KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENY-QTAVPHI 305 (461)
T ss_pred EECCEEEEEEEeCC----eEEEEE-CCC--CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCc-ccCCCCE
Confidence 99999999986543 233332 223 469999999999999999864 236788889999999998 8999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+|||++.+ ..+..|..+|+.||.+|...... ... ...|+.|++++ ||+++++++.
T Consensus 306 yAiGD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~--vG~te~~a~~ 366 (461)
T PRK05249 306 YAVGDVIGFP-SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISS--VGKTEQELTA 366 (461)
T ss_pred EEeeecCCCc-ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceE--ecCCHHHHHH
Confidence 9999999863 68899999999999999632111 111 25599999999 9999988874
No 29
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=287.11 Aligned_cols=303 Identities=36% Similarity=0.635 Sum_probs=270.1
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEE-cCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVF-EGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~li-e~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
....|||+||||||||-+||.+.+|+|.+.=|+ || .||+..-+-...++.+.|. ..+.++...+.+.++++.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer------fGGQvldT~~IENfIsv~~-teGpkl~~ale~Hv~~Y~ 280 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER------FGGQVLDTMGIENFISVPE-TEGPKLAAALEAHVKQYD 280 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh------hCCeeccccchhheecccc-ccchHHHHHHHHHHhhcC
Confidence 345699999999999999999999999987554 54 8999988877778776654 567889999999999999
Q ss_pred CEEEEe-eEEEEEee---CCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEE
Q 009224 170 AELHQE-DVEFIDVK---SNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLA 244 (540)
Q Consensus 170 v~~~~~-~v~~i~~~---~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 244 (540)
+++... +++.+.+. ++-+.|+. ++-.++++.+|+|||++.+...+||+++|...++.+|..|++ +++++|+|+
T Consensus 281 vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDG--PLF~gK~VA 358 (520)
T COG3634 281 VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG--PLFKGKRVA 358 (520)
T ss_pred chhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCC--cccCCceEE
Confidence 998765 66666653 33444544 778899999999999999999999999999999999999998 558999999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|||||++|+|.|..|+....+||+++-.+.+.+..-+.+++....+|+++++..-++|.+++ .++.++...+..+|...
T Consensus 359 VIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~ 437 (520)
T COG3634 359 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEH 437 (520)
T ss_pred EECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCcee
Confidence 99999999999999999999999999999998887788887778899999999999999884 46889999999999999
Q ss_pred EEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.++-+-|++-+|..||+.+++..++++++|-|.||... .|++|||||+|||+..+++++..|+.+|..|+..+-.||-.
T Consensus 438 ~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g-~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLIR 516 (520)
T COG3634 438 HLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARG-ETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLIR 516 (520)
T ss_pred EEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCC-CcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhhee
Confidence 99999999999999999999988999999999999999 99999999999999999999999999999999998888765
No 30
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.5e-37 Score=318.27 Aligned_cols=329 Identities=22% Similarity=0.316 Sum_probs=230.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----ccCC---CCC---CCCCh
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----ENFP---GFP---DGITG 154 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~~~~---~~~---~~~~~ 154 (540)
...+||+||||||||++||..|++.|++|+|||+...| |.|...+...... ...+ +++ ....+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 83 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR 83 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence 45689999999999999999999999999999986422 2233222111110 0111 221 12344
Q ss_pred HHHHHHHHHH------------HHHh-CCEEEEeeEEEEEeeCCcEEEEECC-eEEEecEEEEccCCCCCCCCCCCcccc
Q 009224 155 PDLMDRMRRQ------------AERW-GAELHQEDVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGATAKRLNLPREDEF 220 (540)
Q Consensus 155 ~~~~~~~~~~------------~~~~-~v~~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~~~~~~~ipg~~~~ 220 (540)
.++..+..+. +++. +++++.++++.++.+...+++..++ .+++||+||||||++|+.|++||.+..
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 163 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAET 163 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCC
Confidence 4444333322 2233 7899999999998654333333222 479999999999999999999997542
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCeEEEeC
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv~~~~~ 296 (540)
. + +...+.......+++++|||+|++|+|+|..|+++|.+|+++.+...+.. ....+.+.+++.||+++++
T Consensus 164 ~---~--~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~ 238 (468)
T PRK14694 164 P---Y--LTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQ 238 (468)
T ss_pred c---e--EcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 1 1 11111111112478999999999999999999999999999987533222 3445566678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..+++ .+.+.. . + .++++|.||+|+|.+|++.++. .+++. .+|++.||+++ +|+.|||||+
T Consensus 239 ~~v~~i~~~~~----~~~v~~-~-~--~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~-~Ts~~~IyA~ 308 (468)
T PRK14694 239 TQASEVDYNGR----EFILET-N-A--GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHL-QTTVSGIYAA 308 (468)
T ss_pred CEEEEEEEcCC----EEEEEE-C-C--CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCc-ccCCCCEEEE
Confidence 99999986543 133322 1 2 2499999999999999998763 24554 57899999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHh---cC-cceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLV---NN-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|||++.+ ..+..|..+|+.||.+|...-. .. -....|+.|++++ ||++++++++ .+++....
T Consensus 309 GD~~~~~-~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~~ 375 (468)
T PRK14694 309 GDCTDQP-QFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVAT--VGLSEAEAQAQGYDTDSRT 375 (468)
T ss_pred eecCCCc-ccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEE--eeCCHHHHHHcCCceEEEE
Confidence 9999864 6888999999999999853211 01 1236699999999 9999988875 45544333
No 31
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=3.5e-37 Score=334.03 Aligned_cols=336 Identities=22% Similarity=0.274 Sum_probs=246.3
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc-----ccc--CcccCCcccEEEECCCHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV-----DAL--SSAEKSVENVVIIGSGPAGYTAAIY 112 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~vvVIGgG~aGl~aA~~ 112 (540)
-|++..++..|++ .|...|+++..+.|++|..+++++.+.. ... ..+....++|+|||||||||+||..
T Consensus 480 nPlp~icGrVC~h----~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~ 555 (1012)
T TIGR03315 480 NPLPAITGTICDH----QCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYF 555 (1012)
T ss_pred CChhhHhhCcCCc----chHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHH
Confidence 3788899999965 4677788888899999999999887631 111 1223456899999999999999999
Q ss_pred HHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC
Q 009224 113 AARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG 192 (540)
Q Consensus 113 l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~ 192 (540)
|+++|++|+|+|+.+. +||++.. .+|.+..+.+..++..+.+.+.|++++.+.... +++. +
T Consensus 556 LAr~G~~VTV~Ek~~~---lGG~l~~--------~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-------~~ve-~ 616 (1012)
T TIGR03315 556 LARAGHPVTVFEKKEK---PGGVVKN--------IIPEFRISAESIQKDIELVKFHGVEFKYGCSPD-------LTVA-E 616 (1012)
T ss_pred HHHCCCeEEEEecccc---cCceeee--------cccccCCCHHHHHHHHHHHHhcCcEEEEecccc-------eEhh-h
Confidence 9999999999999887 8888764 334445556777777788888999998873211 1222 2
Q ss_pred CeEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeeeecCC-CCCCCCCCEEEEEeCCccHHHHHHHHHhc-CC-eEEE
Q 009224 193 ERKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACAICDG-ASPLFKGQVLAVVGGGDTATEEAIYLTKF-AR-HVHL 268 (540)
Q Consensus 193 ~~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~~~~~-~~~~~~~k~v~VvG~G~~a~e~a~~l~~~-g~-~v~l 268 (540)
.....||+||||||+++ ..+.+||........+........ ......+++|+|||||++|+|+|..+.+. |. +|++
T Consensus 617 l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtL 696 (1012)
T TIGR03315 617 LKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV 696 (1012)
T ss_pred hhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEE
Confidence 23456999999999974 555777754211111111111111 11224689999999999999999998876 64 8999
Q ss_pred EEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE-----------EccCCceEEEEccEEEEec
Q 009224 269 LVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR-----------KVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 269 i~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~-----------~~~~g~~~~i~~D~vi~a~ 335 (540)
++|+.. +....+.+.+.+ +.||+++++..+.++.. +++....+. ...+|+..+++||.||+|+
T Consensus 697 VyRr~~~~Mpa~~eEl~~al-eeGVe~~~~~~p~~I~~---g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAi 772 (1012)
T TIGR03315 697 VYRRTKRYMPASREELEEAL-EDGVDFKELLSPESFED---GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAV 772 (1012)
T ss_pred EEccCccccccCHHHHHHHH-HcCCEEEeCCceEEEEC---CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEec
Confidence 998753 333445555544 47999999998888872 222211111 1123556789999999999
Q ss_pred ccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 336 GHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 336 G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
|++|+..++.. +++++++|++.+|+..++|+.|||||+|||+..+ ..+..|+.+|+.||.+|.+...
T Consensus 773 G~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP-~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 773 GEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP-ATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc-cHHHHHHHHHHHHHHHHhcccc
Confidence 99999988754 6788889999999975589999999999999763 7899999999999999976543
No 32
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=6.7e-37 Score=319.26 Aligned_cols=323 Identities=18% Similarity=0.249 Sum_probs=231.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-------CCCCCcceeeccCcccc------CCCCCC--CCChHHH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-------AGGVPGGQLMTTTEVEN------FPGFPD--GITGPDL 157 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-------~~~~~gg~~~~~~~~~~------~~~~~~--~~~~~~~ 157 (540)
..+||+|||||+||++||..+++.|.+|+|||+.. .||.|.+.+........ ..++.. ..+...+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~ 126 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLL 126 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHH
Confidence 46899999999999999999999999999999864 33456665554433211 112211 1222222
Q ss_pred -----------HHHHHHHHHHhCCEEEEeeEEEEEe------------------eCCcEEEE-------ECCeEEEecEE
Q 009224 158 -----------MDRMRRQAERWGAELHQEDVEFIDV------------------KSNPFTVK-------SGERKVKCHSI 201 (540)
Q Consensus 158 -----------~~~~~~~~~~~~v~~~~~~v~~i~~------------------~~~~~~v~-------~~~~~~~~d~l 201 (540)
.+.+...+++.|++++.++....+. +++.+++. .++..++||+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~l 206 (561)
T PTZ00058 127 VERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNI 206 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEE
Confidence 2223344566799999987654431 12223342 14567999999
Q ss_pred EEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----
Q 009224 202 VFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---- 277 (540)
Q Consensus 202 viAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---- 277 (540)
|||||++|+.|++||.+.. + .. +....+..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++
T Consensus 207 VIATGS~P~~P~IpG~~~v----~-ts---~~~~~l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~ 278 (561)
T PTZ00058 207 LIAVGNKPIFPDVKGKEFT----I-SS---DDFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDE 278 (561)
T ss_pred EEecCCCCCCCCCCCceeE----E-EH---HHHhhccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCH
Confidence 9999999999999986421 1 11 1111222389999999999999999999999999999999887654
Q ss_pred -cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ce-eccCCC
Q 009224 278 -SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QV-ELDSSG 354 (540)
Q Consensus 278 -~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~-~~~~~g 354 (540)
..+.+.+.|++.||+++++..+.++..++.+. +.+... ++++++++|.|++|+|++|+++.+.. ++ ..+++|
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~---v~v~~~--~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G 353 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKN---LTIYLS--DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKG 353 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCc---EEEEEC--CCCEEEECCEEEECcCCCCCccccCccccceecCCC
Confidence 23445556788999999999999998764322 222211 23357999999999999999998753 11 234679
Q ss_pred CEEeCCCccccCCCceEEccccCCC---------------------------------cchhhhhhhchHHHHHHHHHHH
Q 009224 355 YVIVEEGTAKTSVEGVFAAGDVQDH---------------------------------EWRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 355 ~i~vd~~~~~t~~~~iya~GD~~~~---------------------------------~~~~~~~A~~~g~~aa~~i~~~ 401 (540)
+|.||+++ +|+.|||||+|||++. .+.....|..||+.||.+|...
T Consensus 354 ~I~VDe~l-qTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 354 YIKVDDNQ-RTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred eEEECcCC-ccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 99999998 8999999999999982 2467889999999999999642
Q ss_pred Hh----cCcce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 402 LV----NNNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 402 l~----~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
.. ....+ ..|+.|+++. ||++|+++++.
T Consensus 433 ~~~~~~~~~ip~~vft~peiA~--vGlte~eA~~~ 465 (561)
T PTZ00058 433 FSRTTNYKLIPSVIFSHPPIGT--IGLSEQEAIDI 465 (561)
T ss_pred CCcccCCCCCCeEEeCCchhee--eeCCHHHHHHh
Confidence 11 11122 4599999999 99999988854
No 33
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=7e-37 Score=316.11 Aligned_cols=338 Identities=25% Similarity=0.302 Sum_probs=254.1
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
-|++..|+..|+ ....|...|+++..+.|+.|..++++..+.... ....+.+.++|+||||||+|+++|..|
T Consensus 83 np~~~~~grvC~--~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l 160 (467)
T TIGR01318 83 NTLPEICGRVCP--QDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADIL 160 (467)
T ss_pred CCchHhhcccCC--CCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHH
Confidence 378888888884 334678888888888999999999988664221 112233568999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
+++|++|+|+|+.+. +||++.+ ++|.+....++.+...+.++++|++++.+.....+ +.+ +.
T Consensus 161 ~~~G~~V~i~e~~~~---~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----~~~--~~ 222 (467)
T TIGR01318 161 ARAGVQVVVFDRHPE---IGGLLTF--------GIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-----ISL--DD 222 (467)
T ss_pred HHcCCeEEEEecCCC---CCceeee--------cCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-----cCH--HH
Confidence 999999999999887 8888764 45555566778888888899999999887433111 111 11
Q ss_pred eEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeee---------------ecCCCCCCCCCCEEEEEeCCccHHHHHH
Q 009224 194 RKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACA---------------ICDGASPLFKGQVLAVVGGGDTATEEAI 257 (540)
Q Consensus 194 ~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~---------------~~~~~~~~~~~k~v~VvG~G~~a~e~a~ 257 (540)
....||+||+|||+.+ ..+++||.+.. ++.... ..........+++++|||+|++|+++|.
T Consensus 223 ~~~~~D~vilAtGa~~~~~~~i~g~~~~---gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~ 299 (467)
T TIGR01318 223 LLEDYDAVFLGVGTYRSMRGGLPGEDAP---GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVR 299 (467)
T ss_pred HHhcCCEEEEEeCCCCCCcCCCCCcCCC---CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHH
Confidence 2347999999999986 45678886641 111100 0000001235799999999999999999
Q ss_pred HHHhcCC-eEEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------
Q 009224 258 YLTKFAR-HVHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--------------- 319 (540)
Q Consensus 258 ~l~~~g~-~v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--------------- 319 (540)
.+.++|. +|++++|++. +......+.+ +++.||++++++.+.++..+++++++++.+....
T Consensus 300 ~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~-~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~ 378 (467)
T TIGR01318 300 TAIRLGAASVTCAYRRDEANMPGSRREVAN-AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPV 378 (467)
T ss_pred HHHHcCCCeEEEEEecCcccCCCCHHHHHH-HHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceec
Confidence 9999985 7999998764 2334444444 4678999999999999987666777777764321
Q ss_pred CCceEEEEccEEEEecccccCc-cccc-cceeccCCCCEEeC----CCccccCCCceEEccccCCCcchhhhhhhchHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNS-QLLQ-GQVELDSSGYVIVE----EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCI 393 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~-~~~~-~~~~~~~~g~i~vd----~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~ 393 (540)
+++..++++|.||+++|++|+. .++. .+++++++|++.+| .++ +|+.|+|||+|||++++ ..+..|+.+|+.
T Consensus 379 ~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~-~T~~~gVfa~GD~~~~~-~~~~~Ai~~G~~ 456 (467)
T TIGR01318 379 AGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY-QTTNPKIFAGGDAVRGA-DLVVTAVAEGRQ 456 (467)
T ss_pred CCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc-cCCCCCEEEECCcCCCc-cHHHHHHHHHHH
Confidence 2445789999999999999985 3443 35778888999999 455 89999999999999863 678899999999
Q ss_pred HHHHHHHHHh
Q 009224 394 AALSVERYLV 403 (540)
Q Consensus 394 aa~~i~~~l~ 403 (540)
||.+|+++|+
T Consensus 457 aA~~i~~~L~ 466 (467)
T TIGR01318 457 AAQGILDWLG 466 (467)
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 34
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=4.9e-37 Score=317.38 Aligned_cols=321 Identities=21% Similarity=0.253 Sum_probs=232.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCC----------------CCCCCCcceeeccCcc----cc--CCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGY----------------QAGGVPGGQLMTTTEV----EN--FPGFP 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~----------------~~~~~~gg~~~~~~~~----~~--~~~~~ 149 (540)
+.+||+||||||+|..||..++++ |.+|+|||+. +.||.|.+.|...... .. ..++.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999997 9999999973 2445565555443321 11 11221
Q ss_pred -----CCCChHHHHHHH-----------HHHHHH-hCCEEEEeeEEEEEeeCCcEEEEEC-------CeEEEecEEEEcc
Q 009224 150 -----DGITGPDLMDRM-----------RRQAER-WGAELHQEDVEFIDVKSNPFTVKSG-------ERKVKCHSIVFAT 205 (540)
Q Consensus 150 -----~~~~~~~~~~~~-----------~~~~~~-~~v~~~~~~v~~i~~~~~~~~v~~~-------~~~~~~d~lviAt 205 (540)
....+..+.++. ...+++ .|++++.++...++ .+.+.|... ...+.||+|||||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 012332322222 223444 38999999876555 455666421 3579999999999
Q ss_pred CCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc---CCeEEEEEecccccc-----
Q 009224 206 GATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF---ARHVHLLVRREQLRA----- 277 (540)
Q Consensus 206 G~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~---g~~v~li~~~~~~~~----- 277 (540)
|++|..|++||.+..+.. ... . .. ...+++++|||+|++|+|+|..+.++ |.+|+++++.+.+++
T Consensus 160 Gs~p~~p~i~G~~~~~~~--~~~--~-~~--~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~ 232 (486)
T TIGR01423 160 GSWPQMLGIPGIEHCISS--NEA--F-YL--DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDST 232 (486)
T ss_pred CCCCCCCCCCChhheech--hhh--h-cc--ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHH
Confidence 999999999996542211 000 0 11 13478999999999999999877655 999999999987654
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCC
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSG 354 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g 354 (540)
....+.+.|++.||++++++.+.++..++++ ...+.+. + +.++++|.+++|+|++|++.++. .+++++++|
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~---~--g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G 306 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFE---S--GKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKG 306 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEc---C--CCEEEcCEEEEeeCCCcCcccCCchhhCceECCCC
Confidence 3445556678899999999999999865433 1223332 2 24699999999999999998753 367888899
Q ss_pred CEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCCCC
Q 009224 355 YVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRDVQ 429 (540)
Q Consensus 355 ~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 429 (540)
+|.||+++ +|+.|||||+|||++.+ ..+..|+.||+.||.+|...- .... ....|+.|++++ ||++|++++
T Consensus 307 ~I~Vd~~l-~Ts~~~IyA~GDv~~~~-~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~--vGlte~eA~ 382 (486)
T TIGR01423 307 AIQVDEFS-RTNVPNIYAIGDVTDRV-MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGT--CGLVEEDAA 382 (486)
T ss_pred CEecCCCC-cCCCCCEEEeeecCCCc-ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEE--eeCCHHHHH
Confidence 99999999 89999999999999874 688999999999999996321 1111 225699999999 999999888
Q ss_pred Ccc
Q 009224 430 EGF 432 (540)
Q Consensus 430 ~~~ 432 (540)
+.+
T Consensus 383 ~~~ 385 (486)
T TIGR01423 383 KKF 385 (486)
T ss_pred hcC
Confidence 754
No 35
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.9e-36 Score=277.78 Aligned_cols=321 Identities=22% Similarity=0.275 Sum_probs=240.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC--------CCCCCCcceeeccCccc------cCCCCCC----CCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY--------QAGGVPGGQLMTTTEVE------NFPGFPD----GIT 153 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~--------~~~~~~gg~~~~~~~~~------~~~~~~~----~~~ 153 (540)
.+.+|.+|||||.+|+++|++++.+|.++.|+|.. ..||.|...+++.+.+. .-.||+. .++
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 34699999999999999999999999999999975 34556666666654331 1123332 233
Q ss_pred hHHHHHHHHH-----------HHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccc
Q 009224 154 GPDLMDRMRR-----------QAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 154 ~~~~~~~~~~-----------~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
|..+.+.-.. .+.+.+++++.++...+++. .+.|+. ++ ..+.+++++||||++|.+|.|||.+.
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~--~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~ 175 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPG--EVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAEL 175 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCC--ceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhh
Confidence 4333332222 23444678888877766643 344443 33 23789999999999999999999764
Q ss_pred ccCCCeeeeeecCCCCCC-CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 220 FWSRGISACAICDGASPL-FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
-. ..+++..+ ..+|+++|||+|++|+|+|..++.+|.+++++.|.+.++. .++.+.+.++.+||++
T Consensus 176 gi--------dSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginv 247 (478)
T KOG0405|consen 176 GI--------DSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINV 247 (478)
T ss_pred cc--------ccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceee
Confidence 11 11222221 3689999999999999999999999999999999988765 4555666788999999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
|.++.++++....+|-...+. . .+....+|.++||+|++|++.-+.. +++++++|.|++|++. +|++|+|
T Consensus 248 h~~s~~~~v~K~~~g~~~~i~----~--~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq-~Tnvp~I 320 (478)
T KOG0405|consen 248 HKNSSVTKVIKTDDGLELVIT----S--HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQ-NTNVPSI 320 (478)
T ss_pred cccccceeeeecCCCceEEEE----e--ccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccc-cCCCCce
Confidence 999999999887665322111 1 1233459999999999999887653 7899999999999998 9999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc-----e-eeecCCCccCCCCcCCCCCCCCcc
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL-----L-IEFHQPQAEEPKKDLTDRDVQEGF 432 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~-----~-~~~~~~~~~~~~v~~~~~~~~~~~ 432 (540)
|++||+++. ......|+++|+..|..+-......++ + ..|++|++++ ||++|+++-+.|
T Consensus 321 ~avGDv~gk-~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igt--VGLtE~EAieky 385 (478)
T KOG0405|consen 321 WAVGDVTGK-INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGT--VGLTEEEAIEKY 385 (478)
T ss_pred EEeccccCc-EecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCccc--ccCCHHHHHHHh
Confidence 999999996 467788999998888887654333332 2 6699999999 999999998877
No 36
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=3.5e-37 Score=302.13 Aligned_cols=294 Identities=21% Similarity=0.253 Sum_probs=231.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC-C
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG-A 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 170 (540)
+++|||||||++|+.+|..|.+.. .+|+|||+.+... .. +..+.. .....+..++.-.++..+++.+ +
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl------~~-plL~ev--a~g~l~~~~i~~p~~~~~~~~~~v 73 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL------FT-PLLYEV--ATGTLSESEIAIPLRALLRKSGNV 73 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc------cc-hhhhhh--hcCCCChhheeccHHHHhcccCce
Confidence 478999999999999999999974 8999999877621 11 111110 0112445667777888888665 9
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc--cCCCeeeeeec--------CCCCCCC--
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF--WSRGISACAIC--------DGASPLF-- 238 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~--~~~~~~~~~~~--------~~~~~~~-- 238 (540)
+++.++|++||.+++.+++. ++..+.||+||+|+|+.+..+++||..++ ....+.++... +......
T Consensus 74 ~~~~~~V~~ID~~~k~V~~~-~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~ 152 (405)
T COG1252 74 QFVQGEVTDIDRDAKKVTLA-DLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD 152 (405)
T ss_pred EEEEEEEEEEcccCCEEEeC-CCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999887 46789999999999999999999996553 22222222110 0010001
Q ss_pred -CCCEEEEEeCCccHHHHHHHHHhcC-------------CeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 239 -KGQVLAVVGGGDTATEEAIYLTKFA-------------RHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 239 -~~k~v~VvG~G~~a~e~a~~l~~~g-------------~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
.-.+++|+|||++|+|+|.+|+++. .+|+++++.+++++ .....++.|++.||++++++.|
T Consensus 153 ~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~V 232 (405)
T COG1252 153 RALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPV 232 (405)
T ss_pred cceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCce
Confidence 2247999999999999999887542 28999999999877 5667788899999999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCC
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~ 378 (540)
++++++. +.+.+ +++ +|++|++||++|.+++...-. .+++.|+.|++.||++++..++|+|||+|||+.
T Consensus 233 t~v~~~~------v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 233 TEVTPDG------VTLKD---GEE-EIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred EEECCCc------EEEcc---CCe-eEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 9998874 66644 332 799999999999999877655 467889999999999998899999999999997
Q ss_pred Cc-----chhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 379 HE-----WRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 379 ~~-----~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.+ +..+..|.+||+.+|.||.+.+.++++
T Consensus 303 ~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l 336 (405)
T COG1252 303 VIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPL 336 (405)
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 43 478899999999999999999999655
No 37
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.1e-36 Score=327.79 Aligned_cols=340 Identities=23% Similarity=0.279 Sum_probs=255.1
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc-----c-cCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD-----A-LSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..++..|+ ....|...|.++..+.|+.|..++++..+..- + ........++|+|||||||||+||..|+
T Consensus 270 p~p~~~grvCp--~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~ 347 (654)
T PRK12769 270 SLPEITGRVCP--QDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLA 347 (654)
T ss_pred CchhHhcccCC--CCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHH
Confidence 68888888884 33467888888888899999999998765321 1 1112245689999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|+|+.+. +||.+.+ ++|.+....++.....+.++++|++++.+.....+ +++. ..
T Consensus 348 ~~G~~V~V~E~~~~---~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~--~~ 409 (654)
T PRK12769 348 RNGVAVTVYDRHPE---IGGLLTF--------GIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD-----ISLE--SL 409 (654)
T ss_pred HCCCeEEEEecCCC---CCceeee--------cCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc-----CCHH--HH
Confidence 99999999999887 8888775 44555556777777788889999999887533211 1111 11
Q ss_pred EEEecEEEEccCCCC-CCCCCCCcccccCCCeeee-----------eec----CCCCCCCCCCEEEEEeCCccHHHHHHH
Q 009224 195 KVKCHSIVFATGATA-KRLNLPREDEFWSRGISAC-----------AIC----DGASPLFKGQVLAVVGGGDTATEEAIY 258 (540)
Q Consensus 195 ~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~-----------~~~----~~~~~~~~~k~v~VvG~G~~a~e~a~~ 258 (540)
...||+|++|||+.. +.+.+||.+. .++... ... ........+++|+|||+|++|+|+|..
T Consensus 410 ~~~~DavilAtGa~~~~~l~i~g~~~---~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~ 486 (654)
T PRK12769 410 LEDYDAVFVGVGTYRSMKAGLPNEDA---PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRT 486 (654)
T ss_pred HhcCCEEEEeCCCCCCCCCCCCCCCC---CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHH
Confidence 246999999999864 4667887653 111110 000 000012468999999999999999999
Q ss_pred HHhcCC-eEEEEEecccc--cccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------C
Q 009224 259 LTKFAR-HVHLLVRREQL--RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------T 320 (540)
Q Consensus 259 l~~~g~-~v~li~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~ 320 (540)
+.++|. +|+++++++.. ......++. +++.||+++++..+.++..+++++++++.+.... .
T Consensus 487 a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~-~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~ 565 (654)
T PRK12769 487 ALRHGASNVTCAYRRDEANMPGSKKEVKN-AREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIP 565 (654)
T ss_pred HHHcCCCeEEEeEecCCCCCCCCHHHHHH-HHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCC
Confidence 888886 79999987643 334444443 6778999999999999987666778888765321 2
Q ss_pred CceEEEEccEEEEecccccCc-cccc-cceeccCCCCEEeCCC---ccccCCCceEEccccCCCcchhhhhhhchHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNS-QLLQ-GQVELDSSGYVIVEEG---TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa 395 (540)
|+..++++|.||+|+|+.|+. .++. .+++++++|.|.+|.. .++|+.|+|||+||++.+ ...+..|+.+|+.||
T Consensus 566 g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g-~~~vv~Ai~~Gr~AA 644 (654)
T PRK12769 566 GSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRG-ADLVVTAMAEGRHAA 644 (654)
T ss_pred CceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCC-CcHHHHHHHHHHHHH
Confidence 445689999999999999985 4444 3688889999999863 238999999999999986 478899999999999
Q ss_pred HHHHHHHhcC
Q 009224 396 LSVERYLVNN 405 (540)
Q Consensus 396 ~~i~~~l~~~ 405 (540)
.+|.++|..+
T Consensus 645 ~~I~~~L~~~ 654 (654)
T PRK12769 645 QGIIDWLGVK 654 (654)
T ss_pred HHHHHHhCcC
Confidence 9999999753
No 38
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.2e-36 Score=309.01 Aligned_cols=323 Identities=22% Similarity=0.306 Sum_probs=230.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCC---CCCCChHHHHH-----------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF---PDGITGPDLMD----------- 159 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~~~~----------- 159 (540)
.+||+||||||||++||..|+++|++|+|||+.+.. .||.............+ .......++..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~--~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAM--YGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcc--cceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999987530 35554322111000000 00112222222
Q ss_pred HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC--CeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCC
Q 009224 160 RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG--ERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPL 237 (540)
Q Consensus 160 ~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~--~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~ 237 (540)
...+.+.+.+++++.+++..++ ++.+.+... ...+.||+||||||++|+.|++||.+.. ..+..........
T Consensus 81 ~~~~~~~~~gV~~~~g~~~~~~--~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~--~~v~~~~~~~~~~-- 154 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAEAHFVS--NKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADS--KHVYDSTGIQSLE-- 154 (438)
T ss_pred HHHHHHHhCCCEEEEEEEEEcc--CCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCC--CcEEchHHHhcch--
Confidence 2234566779999998876553 455666532 3579999999999999999999996432 1122222111111
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
..+++++|||+|++|+|+|..|++.|.+|+++++.+.+.+ ......+.+++.||++++++++.++..+++ .
T Consensus 155 ~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~----~ 230 (438)
T PRK07251 155 TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGD----Q 230 (438)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCC----E
Confidence 3478999999999999999999999999999999887654 234445567889999999999999987542 2
Q ss_pred EEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhc
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG 389 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~ 389 (540)
+.+.. ++.++++|.+|+|+|++|+.+.+. .++.++++|++.||+++ +|+.|||||+|||++. +.....|..
T Consensus 231 v~v~~----~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~-~t~~~~IyaiGD~~~~-~~~~~~a~~ 304 (438)
T PRK07251 231 VLVVT----EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYC-QTSVPGVFAVGDVNGG-PQFTYISLD 304 (438)
T ss_pred EEEEE----CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecCCC-cccHhHHHH
Confidence 33332 234699999999999999988653 35667888999999998 8999999999999986 367888999
Q ss_pred hHHHHHHHHHHHH-----hcCcc-eeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 390 SGCIAALSVERYL-----VNNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 390 ~g~~aa~~i~~~l-----~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
+|+.++.++...- ..... ...|+.|++++ ||++++++++ .+++..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~--vGlte~~a~~~g~~~~~ 356 (438)
T PRK07251 305 DFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQ--VGLTEKEAKEAGLPYAV 356 (438)
T ss_pred HHHHHHHHHcCCCCccccccCCCCEEEECCCceEe--eeCCHHHHHhcCCCeEE
Confidence 9999887775321 11112 24589999999 9999998875 344333
No 39
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.2e-36 Score=313.48 Aligned_cols=321 Identities=24% Similarity=0.300 Sum_probs=228.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc------ccCCCCCC---C
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV------ENFPGFPD---G 151 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~------~~~~~~~~---~ 151 (540)
...+||+|||||+||+++|..|+++|.+|+|+|+.+. +||.+.... .. ..+.+++. .
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~---~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV---IGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc---ceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 3458999999999999999999999999999998744 555554321 00 11123221 1
Q ss_pred CChHHHHH-------HH-----HHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCC
Q 009224 152 ITGPDLMD-------RM-----RRQAERW-GAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 152 ~~~~~~~~-------~~-----~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ip 215 (540)
.....+.. .+ ...++.. +++++.+++..++ .+.+.|.. ++ .++.||+||||||++|+.|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~ 168 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIP 168 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCC
Confidence 22222211 11 1223333 7899988876665 34566654 33 4699999999999999999999
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNI 291 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv 291 (540)
|.+.... ..... .......+++++|||+|++|+|+|..|.+.|.+|+++.+...+.. ....+.+.+++.||
T Consensus 169 G~~~~~~--~~~~~---~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 169 GLMDTPY--WTSTE---ALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGI 243 (479)
T ss_pred CcCccce--ecchH---HhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCC
Confidence 9653110 11011 111112468999999999999999999999999999988543222 23445556788999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++++.++..+++ .+.+.. .+ .++++|.||+|+|+.||+.++. .+++++++|+|.||+++ +|+.|
T Consensus 244 ~i~~~~~V~~i~~~~~----~~~v~~---~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~-~Ts~~ 314 (479)
T PRK14727 244 EVLNNTQASLVEHDDN----GFVLTT---GH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM-ETSAP 314 (479)
T ss_pred EEEcCcEEEEEEEeCC----EEEEEE---cC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCe-ecCCC
Confidence 9999999999986543 233332 12 2489999999999999998643 36788889999999998 89999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCc-ceeeecCCCccCCCCcCCCCCCCC-ccee
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDI 434 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 434 (540)
||||+|||++.+ ..+..|+.+|+.||.+|..... ... ....|+.|+++. ||+++++++. .+++
T Consensus 315 ~IyA~GD~~~~~-~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~--vGlte~~a~~~g~~~ 382 (479)
T PRK14727 315 DIYAAGDCSDLP-QFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVAT--VGLSEAKAHLSGIET 382 (479)
T ss_pred CEEEeeecCCcc-hhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceee--eeCCHHHHHHcCCce
Confidence 999999999864 6788999999999999963211 111 125699999999 9999988875 3443
No 40
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.5e-36 Score=312.44 Aligned_cols=323 Identities=25% Similarity=0.345 Sum_probs=232.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC---------------ccccCCCC-----CCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT---------------EVENFPGF-----PDGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~---------------~~~~~~~~-----~~~~~ 153 (540)
.+||+||||||||++||..|++.|++|+|||+.. .||.+.... ...+++.+ .....
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~----~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP----LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc----cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 4899999999999999999999999999999843 455543210 11111111 12345
Q ss_pred hHHHHHHHHHH------------HHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 154 GPDLMDRMRRQ------------AERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 154 ~~~~~~~~~~~------------~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
+.++.++..+. ++..+++++.+++..++. +.+.+ ++.++.||+||||||+. .|.+||.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v--~~~~~~~d~lIiATGs~--~p~ipg~~~~~ 152 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV--NGERIEAKNIVIATGSR--VPPIPGVWLIL 152 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE--CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence 55555554433 334477787777665543 23333 66789999999999998 55667754322
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
...+........ ....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++. |+++++
T Consensus 153 ~~~~~~~~~~~~--~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 153 GDRLLTSDDAFE--LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred CCcEECchHHhC--ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcC
Confidence 222222211111 113579999999999999999999999999999999887654 234455567778 999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..+++ ..+.+. ..++++.++++|.+++++|++|+++.+. .+++++++|++.||+++ +|+.|||||+
T Consensus 230 ~~v~~i~~~~~---~~v~~~-~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~-~ts~~~IyA~ 304 (460)
T PRK06292 230 AKVTSVEKSGD---EKVEEL-EKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT-QTSVPGIYAA 304 (460)
T ss_pred CEEEEEEEcCC---ceEEEE-EcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCc-ccCCCCEEEE
Confidence 99999986543 124443 2335567799999999999999998643 36788889999999999 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHH-Hhc---Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERY-LVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~-l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|||++.+ ..+..|..||+.||.+|... ... ... ...|+.|++++ ||++++++++ .+++...
T Consensus 305 GD~~~~~-~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~~~~~ 371 (460)
T PRK06292 305 GDVNGKP-PLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIAS--VGLTEEELKAAGIDYVVG 371 (460)
T ss_pred EecCCCc-cchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEE--eECCHHHHHhcCCCeEEE
Confidence 9999864 67899999999999999753 111 122 35588999999 9999988875 3444333
No 41
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=3.4e-37 Score=317.38 Aligned_cols=314 Identities=18% Similarity=0.250 Sum_probs=224.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCC-CCC-ChHHHHHHH-HHHHHHh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP-DGI-TGPDLMDRM-RRQAERW 168 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~-~~~-~~~~~~~~~-~~~~~~~ 168 (540)
+++|||||||+||+.||..|+++ +++|+|||+++...+....+ |.+. ... ...+..... ..+.++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~l---------p~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCAL---------PYYIGEVVEDRKYALAYTPEKFYDRK 71 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCc---------chhhcCccCCHHHcccCCHHHHHHhC
Confidence 35899999999999999999987 68999999876522111100 1110 001 112222222 2334567
Q ss_pred CCEEEE-eeEEEEEeeCCcEEEEEC--Ce--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEE
Q 009224 169 GAELHQ-EDVEFIDVKSNPFTVKSG--ER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVL 243 (540)
Q Consensus 169 ~v~~~~-~~v~~i~~~~~~~~v~~~--~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v 243 (540)
|++++. .+|+.+|.+++.+.+... +. .+.||+||||||++|+.|++++...+....+..............++++
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 151 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKA 151 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence 999887 599999999999888752 12 4789999999999998877654332221112111111111011247899
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
+|||+|++|+|+|..|++.|.+|+++++.+.+.+ ....+.+.+++.||+++++.++.+++.. .+.+.+
T Consensus 152 vViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------~v~~~~- 224 (438)
T PRK13512 152 LVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGN------EVTFKS- 224 (438)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------EEEECC-
Confidence 9999999999999999999999999999887654 2345556688899999999999999642 244422
Q ss_pred cCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---------cchhhhhhh
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---------EWRQAVTAA 388 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---------~~~~~~~A~ 388 (540)
+ +.+++|.|++|+|++||++++.. +++++++|++.||+++ +|+.|||||+|||++. ....++.|.
T Consensus 225 --g--~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~ 299 (438)
T PRK13512 225 --G--KVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF-ETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH 299 (438)
T ss_pred --C--CEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCc-ccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence 3 46899999999999999988754 5778888999999998 7999999999999862 124566788
Q ss_pred chHHHHHHHHHHHHh----cC-cc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 389 GSGCIAALSVERYLV----NN-NL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 389 ~~g~~aa~~i~~~l~----~~-~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+|+.+|.+|...-. +. .. ...|+.|++++ ||+++.++++
T Consensus 300 ~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~--vGlte~~a~~ 345 (438)
T PRK13512 300 RAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFAS--VGVKPNELKQ 345 (438)
T ss_pred HHHHHHHHHhcCCCccccCCcccceEEEEcCceEEe--ecCCHHHHcc
Confidence 899999999863211 00 11 14589999999 9999988875
No 42
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-36 Score=312.37 Aligned_cols=330 Identities=20% Similarity=0.283 Sum_probs=226.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC--------CCCCcceeeccCccc-c-----CC--CCC--CCCChH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA--------GGVPGGQLMTTTEVE-N-----FP--GFP--DGITGP 155 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~--------~~~~gg~~~~~~~~~-~-----~~--~~~--~~~~~~ 155 (540)
.+||+||||||||++||..|+++|++|+|||+... ||.|++.+....... . .. +.. ......
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 48999999999999999999999999999997433 223333322221110 0 00 110 112222
Q ss_pred HHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 156 DLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 156 ~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
++. ......+++.+++++.++....+ .+.+.+.. ++ ..++||+||||||++|. .+||.+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ipg~~~-~ 157 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDG--VGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPGVTI-D 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCCCCCC-C
Confidence 222 12223345568999988753322 33455543 33 36999999999999885 3566532 1
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
...+...... ......+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ ....+.+.|++.||+++++
T Consensus 158 ~~~~~~~~~~--~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~ 235 (466)
T PRK06115 158 NQRIIDSTGA--LSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLG 235 (466)
T ss_pred CCeEECHHHH--hCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 1111111111 11113579999999999999999999999999999999887654 3344556678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+++.++..++++ + .+.+....+++++.+++|.|++++|++||+..+. .++.++++| +.+|+++ +|+.|+|||+
T Consensus 236 ~~V~~i~~~~~~-v-~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~-~Ts~~~IyA~ 311 (466)
T PRK06115 236 SKVTGATAGADG-V-SLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHH-RTSVPGVWVI 311 (466)
T ss_pred cEEEEEEEcCCe-E-EEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCe-ecCCCCEEEe
Confidence 999999875432 1 2334333335567799999999999999998653 256677767 6789887 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc---C-cceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN---N-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|||++.+ ..++.|..||+.||.+|...... . -....|+.|++++ ||++++++++ .+++...
T Consensus 312 GD~~~~~-~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~--vGlte~~a~~~g~~~~~~ 377 (466)
T PRK06115 312 GDVTSGP-MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVAT--VGKTEEQLKAEGRAYKVG 377 (466)
T ss_pred eecCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEE--eeCCHHHHHHCCCCEEEE
Confidence 9999864 68999999999999999642111 1 1226699999999 9999998875 3444433
No 43
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.8e-36 Score=312.67 Aligned_cols=322 Identities=17% Similarity=0.180 Sum_probs=228.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC----------------CCCCCcceeeccCcc----c--cCCCCC--
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ----------------AGGVPGGQLMTTTEV----E--NFPGFP-- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~----------------~~~~~gg~~~~~~~~----~--~~~~~~-- 149 (540)
.+||+|||||+||+.||..+++.|.+|+|||+.. .||.|.+.|...... . ...++.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 3899999999999999999999999999999731 233444443332211 0 011221
Q ss_pred --CCCChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-C--CeEEEecEEEEccCCCCCCCC
Q 009224 150 --DGITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-G--ERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 150 --~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~--~~~~~~d~lviAtG~~~~~~~ 213 (540)
....+..+.+ .....++..+++++.+....++. +.+.+.. + ...++||+||||||++|+.|+
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ 159 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKKGKEKIYSAERFLIATGERPRYPG 159 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence 1122322222 22334666799999998877764 3455542 2 247999999999999999999
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
+||.+... +. ...... ....+++++|||+|++|+|+|..|++.|.+|+++.+. .+++ ....+.+.|++
T Consensus 160 ipG~~~~~---~~-~~~~~~--~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~L~~ 232 (484)
T TIGR01438 160 IPGAKELC---IT-SDDLFS--LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEHMEE 232 (484)
T ss_pred CCCcccee---ec-HHHhhc--ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccccCHHHHHHHHHHHHH
Confidence 99974321 11 100101 1124678999999999999999999999999999985 4333 34455566888
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccC-CCCEEeCCCccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDS-SGYVIVEEGTAK 364 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~-~g~i~vd~~~~~ 364 (540)
.||++++++.+.++...++ . ..+.+.+ .+...++++|.|++|+|++||+.++. .+++++. +|+|.||+++ +
T Consensus 233 ~gV~i~~~~~v~~v~~~~~-~-~~v~~~~--~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~-~ 307 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEA-K-VKVTFTD--STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEE-Q 307 (484)
T ss_pred cCCEEEeCceEEEEEEcCC-e-EEEEEec--CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCc-c
Confidence 9999999999999876543 1 1233332 12235799999999999999998753 3577765 5899999988 8
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcC-cceeeecCCCccCCCCcCCCCCCCCc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNN-NLLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+.|+|||+|||+.........|..+|+.+|.+|...- ... -....|+.|++++ ||++|+++++.
T Consensus 308 Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~--vGlte~~a~~~ 377 (484)
T TIGR01438 308 TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGA--CGLSEEKAVEK 377 (484)
T ss_pred cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceee--ecCCHHHHHHh
Confidence 99999999999996434678899999999999996421 111 1236699999999 99999988764
No 44
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=307.79 Aligned_cols=321 Identities=26% Similarity=0.334 Sum_probs=232.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----cc--CCCCCC------CCCh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----EN--FPGFPD------GITG 154 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~~--~~~~~~------~~~~ 154 (540)
++||+|||||++|+.||..|+++|.+|+|+|+...| |.|++.+...... .. ..++.. ..+.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 468999999999999999999999999999986532 3444444322110 00 011110 1222
Q ss_pred HHH-----------HHHHHHHHHHhCCEEEEeeEEEEE--eeCCcEEEEE-CCe--EEEecEEEEccCCCCCCCCCCCcc
Q 009224 155 PDL-----------MDRMRRQAERWGAELHQEDVEFID--VKSNPFTVKS-GER--KVKCHSIVFATGATAKRLNLPRED 218 (540)
Q Consensus 155 ~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~--~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~~~~ipg~~ 218 (540)
..+ .+.+.+.+++++++++.+++..++ .+.+.+.+.. ++. .+.||+||||||++|..|+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 160 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence 222 223445567789999999988865 4566777754 333 699999999999999876554432
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
. ..+......... ...+++++|||+|.+|+|+|..|+++|.+|+++++.+.+++ ....+.+.|++.||++
T Consensus 161 ~---~~v~~~~~~~~~--~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i 235 (466)
T PRK07845 161 G---ERILTWRQLYDL--DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTV 235 (466)
T ss_pred C---ceEEeehhhhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 1 111111111111 12468999999999999999999999999999999887655 3445566788899999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
++++.+.++..++++ +.+.. .+ ++++++|.|++++|++|++..+ ..+++++++|+|.||+++ +|+.|||
T Consensus 236 ~~~~~v~~v~~~~~~----~~v~~-~~--g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~-~Ts~~~I 307 (466)
T PRK07845 236 LKRSRAESVERTGDG----VVVTL-TD--GRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVS-RTSVPGI 307 (466)
T ss_pred EcCCEEEEEEEeCCE----EEEEE-CC--CcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCc-ccCCCCE
Confidence 999999999765432 33332 12 3569999999999999999864 346888899999999998 8999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHH-h---cCcce-eeecCCCccCCCCcCCCCCCCC
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYL-V---NNNLL-IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l-~---~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+|||++. +..+..|..||+.||.++...- . ....+ ..|+.|++++ ||+++++++.
T Consensus 308 yA~GD~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~--vGlte~~a~~ 369 (466)
T PRK07845 308 YAAGDCTGV-LPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIAT--VGVSQAAIDS 369 (466)
T ss_pred EEEeeccCC-ccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCccee--ecCCHHHHHh
Confidence 999999986 4789999999999999986311 0 01122 5588999999 9999987775
No 45
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=6.6e-36 Score=318.70 Aligned_cols=319 Identities=22% Similarity=0.292 Sum_probs=228.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-------CCCCcceeeccCcc------ccC-CCCC---CCCChH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-------GGVPGGQLMTTTEV------ENF-PGFP---DGITGP 155 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-------~~~~gg~~~~~~~~------~~~-~~~~---~~~~~~ 155 (540)
..+||+||||||||++||..|++.|.+|+|||+... ||.|.+.+...... ..+ +++. ......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 358999999999999999999999999999998632 22333322211110 111 2332 122333
Q ss_pred HHHHHHH------------HHHHHh-CCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccc
Q 009224 156 DLMDRMR------------RQAERW-GAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 156 ~~~~~~~------------~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
.+.++.. ..+++. +++++.+++..++. +.+.+.. ++ ..++||+||||||++|..|++||.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~ 254 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKE 254 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCc
Confidence 3333211 223444 78999998887764 4555543 33 36999999999999999999999754
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCeEEEe
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv~~~~ 295 (540)
.. + ....+.......+++++|||+|++|+|+|..|.++|.+|+++.+...+.. ....+.+.+++.||++++
T Consensus 255 ~~---~--~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~ 329 (561)
T PRK13748 255 TP---Y--WTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLE 329 (561)
T ss_pred cc---e--EccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEc
Confidence 11 1 11111111123478999999999999999999999999999998643322 334555667889999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++.+.++..+++ .+.+.. . + .++++|.|++|+|++||+.++ ..+++++++|+|.||+++ +|+.|||||
T Consensus 330 ~~~v~~i~~~~~----~~~v~~-~--~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~~~IyA 400 (561)
T PRK13748 330 HTQASQVAHVDG----EFVLTT-G--H-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSVPHIYA 400 (561)
T ss_pred CCEEEEEEecCC----EEEEEe-c--C-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCc-ccCCCCEEE
Confidence 999999976543 133322 1 1 248999999999999999864 246888899999999999 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHH---hcCc-ceeeecCCCccCCCCcCCCCCCCC
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYL---VNNN-LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l---~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+|||++.+ ..+..|..+|+.||.+|...- .... ....|+.|+++. ||+++.++++
T Consensus 401 ~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~ 459 (561)
T PRK13748 401 AGDCTDQP-QFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVAT--VGYSEAEAHH 459 (561)
T ss_pred eeecCCCc-cchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCcee--eeCCHHHHHH
Confidence 99999874 688899999999999996211 0111 235699999999 9999988775
No 46
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=1.4e-35 Score=305.74 Aligned_cols=321 Identities=22% Similarity=0.307 Sum_probs=229.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-------CCCCCcceeeccCccc----c--CCCCC---CCCChHHHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-------AGGVPGGQLMTTTEVE----N--FPGFP---DGITGPDLM 158 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-------~~~~~gg~~~~~~~~~----~--~~~~~---~~~~~~~~~ 158 (540)
|||+||||||+|..||.. ..|.+|+|||+.. .||.|.+.|....... . ..++. ...++.++.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 799999999999998866 4699999999854 3345665544332221 0 01221 123333333
Q ss_pred HHHH------------HH-HHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCe
Q 009224 159 DRMR------------RQ-AERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGI 225 (540)
Q Consensus 159 ~~~~------------~~-~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~ 225 (540)
++.. .. +++.|++++.+++..++ .+.+.+. +++.++||+||||||++|+.|++||.+.. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~V~v~-~g~~~~~d~lViATGs~p~~p~i~g~~~~---~~ 153 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PKTLRTG-DGEEITADQVVIAAGSRPVIPPVIADSGV---RY 153 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CCEEEEC-CCCEEEeCEEEEcCCCCCCCCCCCCcCCc---cE
Confidence 3321 11 44568899998877764 4555554 45689999999999999999999985431 11
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEE
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETV 300 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~ 300 (540)
......... ...+++++|||+|++|+|+|..|++.|.+|+++.+.+.+++ ....+.+++ +.+|++++++++.
T Consensus 154 ~~~~~~~~l--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~ 230 (451)
T PRK07846 154 HTSDTIMRL--PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVV 230 (451)
T ss_pred EchHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEE
Confidence 111111111 12478999999999999999999999999999999887654 222333333 4679999999999
Q ss_pred EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 301 ~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
+++.+++ ++.+.. .++.++++|.|++|+|++|+++++. .+++++++|++.||+++ +|+.|||||+|||+
T Consensus 231 ~i~~~~~----~v~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~-~Ts~p~IyA~GD~~ 302 (451)
T PRK07846 231 GVSQDGS----GVTLRL---DDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQ-RTSAEGVFALGDVS 302 (451)
T ss_pred EEEEcCC----EEEEEE---CCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCc-ccCCCCEEEEeecC
Confidence 9986543 233332 2235699999999999999999864 36888899999999998 79999999999999
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHh-----cCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLV-----NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+.+ ...+.|..||+.+|.+|..... ... ....|+.|+++. ||++++++++ .+++...
T Consensus 303 ~~~-~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~--vGlte~~a~~~g~~~~~~ 366 (451)
T PRK07846 303 SPY-QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIAS--VGLTENEARAAGLDITVK 366 (451)
T ss_pred CCc-cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEe--EeCCHHHHHhcCCCEEEE
Confidence 863 6788999999999999964211 111 225589999999 9999998875 4444433
No 47
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.5e-35 Score=308.40 Aligned_cols=333 Identities=21% Similarity=0.302 Sum_probs=231.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CCC--CCCcceeeccCc-----------c----c---cCCCCC--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAG--GVPGGQLMTTTE-----------V----E---NFPGFP-- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~~--~~~gg~~~~~~~-----------~----~---~~~~~~-- 149 (540)
..+||+||||||||++||.+|++.|.+|+|||+. +.+ ..+||.+....- . . ...+..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 3589999999999999999999999999999981 000 014444332110 0 0 011221
Q ss_pred -CCCChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE---CCeEEEecEEEEccCCCCCCCCC
Q 009224 150 -DGITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS---GERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 150 -~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~---~~~~~~~d~lviAtG~~~~~~~i 214 (540)
......++.+ .....++..+++++.+++..++...+.++|.. ++..++||+||||||+.|+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p- 161 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLP- 161 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCC-
Confidence 0122222222 22334556799999999988886655665554 2357999999999999986542
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCC
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNP 289 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~ 289 (540)
+.. +....+......... ...+++++|||+|++|+|+|..|+++|.+|+++++.+.+.+ ......+.+++.
T Consensus 162 -~~~-~~~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~ 237 (475)
T PRK06327 162 -GVP-FDNKIILDNTGALNF--TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQ 237 (475)
T ss_pred -CCC-CCCceEECcHHHhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHc
Confidence 221 111112211111111 13479999999999999999999999999999999887654 233444557788
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccC
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~ 366 (540)
||++++++++.++..++++ + .+.+.+ .++....+++|.+++++|++|++..+. .+++++++|++.||+++ +|+
T Consensus 238 gi~i~~~~~v~~i~~~~~~-v-~v~~~~-~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~Ts 313 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKG-V-SVAYTD-ADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC-RTN 313 (475)
T ss_pred CcEEEeCcEEEEEEEcCCE-E-EEEEEe-CCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC-ccC
Confidence 9999999999999876432 2 233333 124446799999999999999998542 35788889999999998 899
Q ss_pred CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 367 VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 367 ~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
.|+|||+|||++.+ ..+..|..||+.||.+|...-.. .. ....|+.|+++. ||++++++++ .+++...
T Consensus 314 ~~~VyA~GD~~~~~-~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~--vGlte~~a~~~g~~~~~~ 386 (475)
T PRK06327 314 VPNVYAIGDVVRGP-MLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAW--VGKTEQQLKAEGVEYKAG 386 (475)
T ss_pred CCCEEEEEeccCCc-chHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEE--EeCCHHHHHHcCCCEEEE
Confidence 99999999999864 68899999999999999642110 11 224588999999 9999988875 3444443
No 48
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-36 Score=316.29 Aligned_cols=328 Identities=22% Similarity=0.242 Sum_probs=227.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC---------CCCCCCcceeeccCcc----cc-----CCCCC----
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY---------QAGGVPGGQLMTTTEV----EN-----FPGFP---- 149 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~---------~~~~~~gg~~~~~~~~----~~-----~~~~~---- 149 (540)
...|||+|||+|++|+.||..++++|.+|+|||+. +.||.|.+.|...... .+ ..|+.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 34689999999999999999999999999999964 4455666665543321 00 01211
Q ss_pred -----------------CCCChHHHHHHHH-----------HHHHHhC-------CEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 150 -----------------DGITGPDLMDRMR-----------RQAERWG-------AELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 150 -----------------~~~~~~~~~~~~~-----------~~~~~~~-------v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
..+++..+.++.. ..+++.+ ++++.+....++ .+.+.+..++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~--~~~v~v~~~g~ 271 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVD--KNTIKSEKSGK 271 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEec--CCeEEEccCCE
Confidence 1123333333332 2233333 677777655444 23344433567
Q ss_pred EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 195 KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 195 ~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
.+.||+||||||++|..|++++.+. ..+.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~---~~V~ts~d~~~l~--~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQ---KSVFTSDTAVKLE--GLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCC---CcEEehHHhhhhh--hcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 8999999999999998887655432 2222222222211 2478999999999999999999999999999999987
Q ss_pred ccc-----cHHHHHHH-hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC----------ceEEEEccEEEEecccc
Q 009224 275 LRA-----SRAMQDRV-FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG----------EESVLEAKGLFYGIGHS 338 (540)
Q Consensus 275 ~~~-----~~~~~~~~-l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g----------~~~~i~~D~vi~a~G~~ 338 (540)
+++ ....+.+. +++.||++++++.+.++..++++....+.+.+..++ +.+++++|.|++|+|++
T Consensus 347 ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 347 LLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred ccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 765 23344443 467899999999999998764322122333221111 12479999999999999
Q ss_pred cCccccc---cceeccCCCCEEeCCCccccC------CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH-------
Q 009224 339 PNSQLLQ---GQVELDSSGYVIVEEGTAKTS------VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL------- 402 (540)
Q Consensus 339 p~~~~~~---~~~~~~~~g~i~vd~~~~~t~------~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l------- 402 (540)
||++.+. .+++++ +|+|.||+++ +|+ +|+|||+|||++.+ ..++.|..||+.||.+|....
T Consensus 427 Pnt~~L~l~~~gi~~~-~G~I~VDe~l-qTs~~~~~~v~~IYAiGDv~g~~-~La~~A~~qg~~aa~ni~g~~~~~~~~~ 503 (659)
T PTZ00153 427 PNTNNLGLDKLKIQMK-RGFVSVDEHL-RVLREDQEVYDNIFCIGDANGKQ-MLAHTASHQALKVVDWIEGKGKENVNIN 503 (659)
T ss_pred cCCccCCchhcCCccc-CCEEeECCCC-CcCCCCCCCCCCEEEEEecCCCc-cCHHHHHHHHHHHHHHHcCCCccccccc
Confidence 9999763 246665 4899999998 775 69999999999864 688999999999999996420
Q ss_pred ---------hcCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 403 ---------VNNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 403 ---------~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
..... ...|+.|++++ ||++|+++++.
T Consensus 504 ~~~~~~~~~~~~~iP~~ift~PeiA~--VGlTE~eA~~~ 540 (659)
T PTZ00153 504 VENWASKPIIYKNIPSVCYTTPELAF--IGLTEKEAKEL 540 (659)
T ss_pred cccccccccccCcCCEEEECcCceEE--eeCCHHHHHhc
Confidence 01112 25599999999 99999888753
No 49
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.4e-35 Score=308.29 Aligned_cols=330 Identities=22% Similarity=0.311 Sum_probs=226.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCccc-------cCCCCC--CCCChHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEVE-------NFPGFP--DGITGPDL 157 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~~-------~~~~~~--~~~~~~~~ 157 (540)
.+||+||||||||++||..|+++|++|+|||+...| |.|++.+....... ...+.. .......+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 83 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence 489999999999999999999999999999986422 23333322111100 001111 01122222
Q ss_pred HHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCcccccCC
Q 009224 158 MDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDEFWSR 223 (540)
Q Consensus 158 ~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~~~ 223 (540)
..+. ...++..+++.+.++...++ .+.+.+.. ++ ..++||+||||||++|+.| ||.+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg~~~~-~- 157 (466)
T PRK07818 84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD--ANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PGTSLS-E- 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC--CCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CCCCCC-C-
Confidence 2211 12233346777766554443 44555543 22 4689999999999999764 554311 1
Q ss_pred CeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCce
Q 009224 224 GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTE 298 (540)
Q Consensus 224 ~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~ 298 (540)
.+.... ........+++++|||+|++|+|+|..|+++|.+|+++++.+++++ ....+.+.|++.||+++++++
T Consensus 158 ~v~~~~--~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~ 235 (466)
T PRK07818 158 NVVTYE--EQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTK 235 (466)
T ss_pred cEEchH--HHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCE
Confidence 111111 1111113578999999999999999999999999999999887655 234455667889999999999
Q ss_pred EEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccc
Q 009224 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375 (540)
Q Consensus 299 v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD 375 (540)
+.++..++. ...+.+.. .+|+..++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|+.|+|||+||
T Consensus 236 v~~i~~~~~--~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~p~IyAiGD 311 (466)
T PRK07818 236 VESIDDNGS--KVTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYM-RTNVPHIYAIGD 311 (466)
T ss_pred EEEEEEeCC--eEEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCc-ccCCCCEEEEee
Confidence 999986542 12233332 23555679999999999999999864 346778888999999998 899999999999
Q ss_pred cCCCcchhhhhhhchHHHHHHHHHHHHhc-----Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 376 VQDHEWRQAVTAAGSGCIAALSVERYLVN-----NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 376 ~~~~~~~~~~~A~~~g~~aa~~i~~~l~~-----~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|++. +..+..|..||+.||.+|...-.. ... ...|+.|++++ ||++|++++. .+++....
T Consensus 312 ~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~~ 378 (466)
T PRK07818 312 VTAK-LQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVAS--FGLTEEQAREEGYDVKVAK 378 (466)
T ss_pred cCCC-cccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEE--EeCCHHHHHhCCCcEEEEE
Confidence 9986 478999999999999999642110 111 25699999999 9999988875 34444333
No 50
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=1.9e-35 Score=306.59 Aligned_cols=341 Identities=23% Similarity=0.300 Sum_probs=248.4
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc------ccCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD------ALSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..++..|+. .|...|++.....+++|..++++..+... .....+...++|+|||||+||+++|..|+
T Consensus 88 p~p~~~grvC~~----~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 88 NFPEFTGRVCPA----PCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred CchhHHhCcCCh----hhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 577788888865 47888888888899999999998754311 11122334579999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|+|+.+. +||.+.+ ++|.+....++.....+.+++.|++++.+.....+... +..
T Consensus 164 ~~g~~V~v~e~~~~---~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~-------~~~ 225 (485)
T TIGR01317 164 RAGHTVTVFEREDR---CGGLLMY--------GIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISA-------DEL 225 (485)
T ss_pred HcCCeEEEEecCCC---CCceeec--------cCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCH-------HHH
Confidence 99999999999887 7887764 44444445667777778888999999988544322111 112
Q ss_pred EEEecEEEEccCCC-CCCCCCCCcccccCCCeeeee---------ecCC-C----CCCCCCCEEEEEeCCccHHHHHHHH
Q 009224 195 KVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACA---------ICDG-A----SPLFKGQVLAVVGGGDTATEEAIYL 259 (540)
Q Consensus 195 ~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~---------~~~~-~----~~~~~~k~v~VvG~G~~a~e~a~~l 259 (540)
...||+|++|||+. |+.+++||.+. .++.... .... . .....+|+|+|||+|++|+|+|..+
T Consensus 226 ~~~~d~VilAtGa~~~~~l~i~G~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a 302 (485)
T TIGR01317 226 KEQFDAVVLAGGATKPRDLPIPGREL---KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTS 302 (485)
T ss_pred HhhCCEEEEccCCCCCCcCCCCCcCC---CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHH
Confidence 35799999999998 88899999753 2222210 0000 0 1124689999999999999998877
Q ss_pred HhcC-CeEEEEEeccccccc----------------HHHHHHHhcCCCeE-EEeCceEEEEeeCCCCceeeEEEEEc---
Q 009224 260 TKFA-RHVHLLVRREQLRAS----------------RAMQDRVFNNPNIT-VHFNTETVDVVSNTKGQMSGILLRKV--- 318 (540)
Q Consensus 260 ~~~g-~~v~li~~~~~~~~~----------------~~~~~~~l~~~gv~-~~~~~~v~~i~~~~~g~~~~v~~~~~--- 318 (540)
.+.+ .+|+++++.+..... ....++..+..|+. ++++..+.++..+++++++++.+...
T Consensus 303 ~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 382 (485)
T TIGR01317 303 LRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWK 382 (485)
T ss_pred HHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEec
Confidence 7776 579999887654321 01122223334654 35678888988766577887775322
Q ss_pred -----------cCCceEEEEccEEEEecccc-cCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhh
Q 009224 319 -----------DTGEESVLEAKGLFYGIGHS-PNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAV 385 (540)
Q Consensus 319 -----------~~g~~~~i~~D~vi~a~G~~-p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~ 385 (540)
..++..++++|.||+|+|+. |++.++.. +++++.+|++.+++..++|+.|||||+|||+++ ...+.
T Consensus 383 ~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g-~~~~~ 461 (485)
T TIGR01317 383 KSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG-QSLIV 461 (485)
T ss_pred cCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC-cHHHH
Confidence 12345689999999999996 88877754 577788899977655559999999999999986 36888
Q ss_pred hhhchHHHHHHHHHHHHhcCcc
Q 009224 386 TAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 386 ~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.|+.+|+.||.+|+++|.++..
T Consensus 462 ~Av~~G~~AA~~i~~~L~g~~~ 483 (485)
T TIGR01317 462 WAINEGRKAAAAVDRYLMGSSV 483 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987654
No 51
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5.9e-35 Score=304.16 Aligned_cols=321 Identities=20% Similarity=0.278 Sum_probs=224.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------Cccc------cCCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TEVE------NFPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~~~~------~~~~~~---~~~ 152 (540)
..|||+||||||||++||..|+++|++|+|+|+.. +||.+... .... ...++. ...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~----~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK----LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC----CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 45899999999999999999999999999999863 44444322 1100 011211 012
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEee-----CCcEEEEE-CC--eEEEecEEEEccCCCCCCCC
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVK-----SNPFTVKS-GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~-----~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
....+.+ .....+++.+++++.++++.++.. ++.+.+.. ++ ..+.||+||||||++|..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~- 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL- 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC-
Confidence 2222222 222445667999999999988865 34666654 33 5799999999999998654
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
|+.+. ....+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++
T Consensus 158 -p~~~~-~~~~~~~~~~~~~~--~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~ 233 (472)
T PRK05976 158 -PGLPF-DGEYVISSDEALSL--ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKK 233 (472)
T ss_pred -CCCCC-CCceEEcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHh
Confidence 33221 11111111111111 12478999999999999999999999999999999887655 23444556788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCcccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTAKT 365 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~~t 365 (540)
.||++++++++.++....++. +.+....+|+.+++++|.+|+|+|.+|++..+.. ++.. .+|++.||+++ +|
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~---~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l-~t 308 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGG---VLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFC-QT 308 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCC---EEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCc-cc
Confidence 899999999999997521122 2222223455567999999999999999876532 3333 46899999998 89
Q ss_pred CCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCCCCC
Q 009224 366 SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 366 ~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+.|+|||+|||++. +..+..|..+|+.||.+|...- .... ....|+.|+++. ||++++++++
T Consensus 309 s~~~IyAiGD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vG~te~~a~~ 375 (472)
T PRK05976 309 KERHIYAIGDVIGE-PQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVAS--VGLTEEEAKE 375 (472)
T ss_pred CCCCEEEeeecCCC-cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEE--EeCCHHHHHH
Confidence 99999999999976 3688999999999999985311 0111 124588999999 9999988875
No 52
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.3e-35 Score=309.17 Aligned_cols=319 Identities=18% Similarity=0.207 Sum_probs=225.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC---CCC--CCcceeeccCccc------------------cCCCC--
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ---AGG--VPGGQLMTTTEVE------------------NFPGF-- 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~---~~~--~~gg~~~~~~~~~------------------~~~~~-- 148 (540)
++||+||||||||++||..|+++|++|+|||+.. .+. ..||......-.. ...++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999631 010 1455432210000 01122
Q ss_pred CCCCChHHHHHHHHHHHHH-----------hCCEEEEeeEEEEEeeCCcEEEEEC--CeEEEecEEEEccCCCCCCCC-C
Q 009224 149 PDGITGPDLMDRMRRQAER-----------WGAELHQEDVEFIDVKSNPFTVKSG--ERKVKCHSIVFATGATAKRLN-L 214 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~v~~i~~~~~~~~v~~~--~~~~~~d~lviAtG~~~~~~~-i 214 (540)
+....+.++.++....+++ .+++++.+++...+ .+.+.+... ...++||+||||||+.|+.|. +
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 1135556666665554433 46777777666543 345555432 357999999999999999874 8
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCC
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPN 290 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~g 290 (540)
||.+.... ...... . ....+++++|||+|++|+|+|..|+++|.+|+++.+...+.. ....+.+.|++.|
T Consensus 163 ~G~~~~~~---~~~~~~-~--~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~G 236 (499)
T PTZ00052 163 PGAKEYSI---TSDDIF-S--LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQG 236 (499)
T ss_pred CCccceee---cHHHHh-h--hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcC
Confidence 88654211 100010 1 112468999999999999999999999999999987533222 2345556678899
Q ss_pred eEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCC
Q 009224 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSV 367 (540)
Q Consensus 291 v~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~ 367 (540)
|++++++.+.++...++ .+ .+.+. ++ +++++|.|++++|++||++++. .+++++++|++.+++. +|+.
T Consensus 237 V~i~~~~~v~~v~~~~~-~~-~v~~~---~g--~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~ 307 (499)
T PTZ00052 237 TLFLEGVVPINIEKMDD-KI-KVLFS---DG--TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNI 307 (499)
T ss_pred CEEEcCCeEEEEEEcCC-eE-EEEEC---CC--CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCC
Confidence 99999999999876542 11 23332 23 4589999999999999999763 3678888998877776 8999
Q ss_pred CceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 368 EGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 368 ~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+|||+|||+...+..+..|+.+|+.+|.+|...-. ... ....|+.|++++ ||++|+++++.
T Consensus 308 p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~--vGlte~~A~~~ 374 (499)
T PTZ00052 308 PNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGA--CGYSSEAAIAK 374 (499)
T ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCccee--ecCCHHHHHHh
Confidence 999999999964347889999999999999963211 111 225699999999 99999988754
No 53
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=8.9e-35 Score=302.96 Aligned_cols=323 Identities=23% Similarity=0.351 Sum_probs=231.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc-c-----cCCCCC---CCCCh
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV-E-----NFPGFP---DGITG 154 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~-~-----~~~~~~---~~~~~ 154 (540)
+||+|||||+||++||.+|+++|++|+|||+ +. +||.+.... .. + ...++. .....
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~---~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EY---LGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CC---CCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 7999999999999999999999999999998 44 555543221 00 0 000110 11222
Q ss_pred HHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC--eEEEecEEEEccCCCCCCCCCC-Ccccc
Q 009224 155 PDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE--RKVKCHSIVFATGATAKRLNLP-REDEF 220 (540)
Q Consensus 155 ~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lviAtG~~~~~~~ip-g~~~~ 220 (540)
..+..+ ....+++.+++++.+++..++ .+.+.+.... ..++||+||+|||++|+.|++| +.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~- 154 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDG- 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCC-
Confidence 332222 223455678999999887765 4456665432 5799999999999999887776 3221
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEe
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~ 295 (540)
..+........ ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+.+.+ ......+.+++.||++++
T Consensus 155 --~~~~~~~~~~~--~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~ 230 (461)
T TIGR01350 155 --EVVITSTGALN--LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILT 230 (461)
T ss_pred --ceEEcchHHhc--cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 11211111111 113478999999999999999999999999999999887654 234455567888999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcc--ccc-cceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ--LLQ-GQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++++.++..+++ .+.+.. .++...++++|.+|+|+|.+|++. ++. .++.++.+|++.||+++ +|+.|+|||
T Consensus 231 ~~~v~~i~~~~~----~v~v~~-~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l-~t~~~~Iya 304 (461)
T TIGR01350 231 NTKVTAVEKNDD----QVVYEN-KGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYM-RTNVPGIYA 304 (461)
T ss_pred CCEEEEEEEeCC----EEEEEE-eCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCc-ccCCCCEEE
Confidence 999999986543 233332 224346799999999999999988 333 36788889999999998 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHh-c----CcceeeecCCCccCCCCcCCCCCCCCc-ceeeee
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLV-N----NNLLIEFHQPQAEEPKKDLTDRDVQEG-FDITCT 437 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~-~----~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 437 (540)
+|||+..+ ..+..|+.+|+.||.+|...-. . ......|+.|+++. +|+++++++.. +++...
T Consensus 305 iGD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~--vG~~~~~a~~~g~~~~~~ 372 (461)
T TIGR01350 305 IGDVIGGP-MLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVAS--VGLTEEQAKEAGYDVKIG 372 (461)
T ss_pred eeecCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEE--EeCCHHHHHhCCCCeEEE
Confidence 99999863 6889999999999999974321 1 11225588999999 99998888763 443333
No 54
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=4e-35 Score=314.25 Aligned_cols=341 Identities=22% Similarity=0.278 Sum_probs=255.6
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..++..|+ ....|...|.++..+.++.|..++++..+.... ......+.++|+|||||+|||++|..|+
T Consensus 253 p~p~~~grvCp--~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~ 330 (639)
T PRK12809 253 SLPEICGRVCP--QDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILA 330 (639)
T ss_pred CcchhhcccCC--CCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHH
Confidence 68888888884 334578888888888999999999987754221 1122335789999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|+|+.+. +||.+.+ ++|.+....++.+...+.++++|++++.+.....+ +++ ...
T Consensus 331 ~~G~~Vtv~e~~~~---~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----~~~--~~l 392 (639)
T PRK12809 331 RAGVQVDVFDRHPE---IGGMLTF--------GIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-----ITF--SDL 392 (639)
T ss_pred HcCCcEEEEeCCCC---CCCeeec--------cCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc-----CCH--HHH
Confidence 99999999999887 8888875 55555566777777788899999999888432211 111 112
Q ss_pred EEEecEEEEccCCCC-CCCCCCCcccccCCCeeee-----------eecCC---C-CCCCCCCEEEEEeCCccHHHHHHH
Q 009224 195 KVKCHSIVFATGATA-KRLNLPREDEFWSRGISAC-----------AICDG---A-SPLFKGQVLAVVGGGDTATEEAIY 258 (540)
Q Consensus 195 ~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~-----------~~~~~---~-~~~~~~k~v~VvG~G~~a~e~a~~ 258 (540)
...||+|++|||+.+ ..+.+||.+. .++... ..... . .....+|+|+|||+|.+++++|..
T Consensus 393 ~~~~DaV~latGa~~~~~~~i~g~~~---~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~ 469 (639)
T PRK12809 393 TSEYDAVFIGVGTYGMMRADLPHEDA---PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRT 469 (639)
T ss_pred HhcCCEEEEeCCCCCCCCCCCCCCcc---CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHH
Confidence 346999999999874 5667888653 111110 00000 0 112468999999999999999999
Q ss_pred HHhcCC-eEEEEEecccc--cccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------C
Q 009224 259 LTKFAR-HVHLLVRREQL--RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------T 320 (540)
Q Consensus 259 l~~~g~-~v~li~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~ 320 (540)
+.++|. +|++++|++.. ......+.. +++.||++++++.++++..+++|++.++.+.... .
T Consensus 470 ~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~-a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~ 548 (639)
T PRK12809 470 SIRLNAASVTCAYRRDEVSMPGSRKEVVN-AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVA 548 (639)
T ss_pred HHHcCCCeEEEeeecCcccCCCCHHHHHH-HHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecC
Confidence 888884 89999987643 223344443 4678999999999999987767778877654321 2
Q ss_pred CceEEEEccEEEEecccccCc-cccc-cceeccCCCCEEeCCC---ccccCCCceEEccccCCCcchhhhhhhchHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNS-QLLQ-GQVELDSSGYVIVEEG---TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa 395 (540)
++++++++|.||+|+|+.|+. .++. .+++++++|++.+|+. .++|+.|+|||+||++.+ ...+..|+.+|+.||
T Consensus 549 g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g-~~~vv~Ai~~Gr~AA 627 (639)
T PRK12809 549 GSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHG-ADLVVTAMAAGRQAA 627 (639)
T ss_pred CceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCC-chHHHHHHHHHHHHH
Confidence 456789999999999999975 4444 3678888999999863 248999999999999986 478899999999999
Q ss_pred HHHHHHHhcCc
Q 009224 396 LSVERYLVNNN 406 (540)
Q Consensus 396 ~~i~~~l~~~~ 406 (540)
.+|+++|.+..
T Consensus 628 ~~i~~~l~~~~ 638 (639)
T PRK12809 628 RDMLTLFDTKA 638 (639)
T ss_pred HHHHHHHhhhc
Confidence 99999997653
No 55
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=7.4e-36 Score=306.16 Aligned_cols=301 Identities=18% Similarity=0.185 Sum_probs=223.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++++|||||||+||+.+|..|.+.+++|+|||+++...+ ......+ ........++...+...++..+++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~-------~~~l~~~--~~g~~~~~~~~~~~~~~~~~~~~~ 78 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF-------TPLLPQT--TTGTLEFRSICEPVRPALAKLPNR 78 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch-------hhhHHHh--cccCCChHHhHHHHHHHhccCCeE
Confidence 3457999999999999999999877899999998665221 1111000 011123455666677777788999
Q ss_pred EEEeeEEEEEeeCCcEEEE---------ECCeEEEecEEEEccCCCCCCCCCCCcccc--cCCCeeeeeecC--------
Q 009224 172 LHQEDVEFIDVKSNPFTVK---------SGERKVKCHSIVFATGATAKRLNLPREDEF--WSRGISACAICD-------- 232 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~---------~~~~~~~~d~lviAtG~~~~~~~ipg~~~~--~~~~~~~~~~~~-------- 232 (540)
++.++|+.||.+++.+.+. .++..+.||+||||||+.+..+++||.++. ....+.++....
T Consensus 79 ~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~ 158 (424)
T PTZ00318 79 YLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIE 158 (424)
T ss_pred EEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998882 245679999999999999999999997542 111221111000
Q ss_pred --CCC-----CCCCCCEEEEEeCCccHHHHHHHHHh--------------cCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 233 --GAS-----PLFKGQVLAVVGGGDTATEEAIYLTK--------------FARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 233 --~~~-----~~~~~k~v~VvG~G~~a~e~a~~l~~--------------~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
... .....++++|||+|++|+|+|..|+. .+.+|+++++.+.+++ .....++.|
T Consensus 159 ~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L 238 (424)
T PTZ00318 159 RASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRL 238 (424)
T ss_pred HhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHH
Confidence 000 01123599999999999999998875 3689999999877644 355566778
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccC
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~ 366 (540)
++.||++++++++.++..+ .+.+.+ ++++++|.+||++|.+|+..+...+++++++|+|.||++++.++
T Consensus 239 ~~~gV~v~~~~~v~~v~~~------~v~~~~-----g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~ 307 (424)
T PTZ00318 239 RRLGVDIRTKTAVKEVLDK------EVVLKD-----GEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKP 307 (424)
T ss_pred HHCCCEEEeCCeEEEEeCC------EEEECC-----CCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCC
Confidence 9999999999999999754 255532 34799999999999999853334467778889999999995589
Q ss_pred CCceEEccccCCC----cchhhhhhhchHHHHHHHHHHHHhcCcceeeec
Q 009224 367 VEGVFAAGDVQDH----EWRQAVTAAGSGCIAALSVERYLVNNNLLIEFH 412 (540)
Q Consensus 367 ~~~iya~GD~~~~----~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~ 412 (540)
+|||||+|||+.. .++.+..|+.||+.+|.+|.+.+.++.....|.
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~ 357 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFV 357 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCe
Confidence 9999999999973 246788999999999999999998775333343
No 56
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=8.8e-35 Score=301.46 Aligned_cols=318 Identities=23% Similarity=0.294 Sum_probs=227.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----c--cCCCCC-----CCCChHHH
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----E--NFPGFP-----DGITGPDL 157 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~--~~~~~~-----~~~~~~~~ 157 (540)
+|+||||||||++||..|++.|.+|+|||+...| |.|.+.+...... . ...+++ ...++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 7999999999999999999999999999997543 3454444322111 0 011221 12233333
Q ss_pred HHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCCCCCCCcccccCCC
Q 009224 158 MDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 158 ~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~ 224 (540)
..+. ...+++.+++++.+++..++ .+.+.+.. ++ ..++||+||||||++|+.|++++.+.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~---~ 156 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGK---W 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc--CCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCC---e
Confidence 3222 22345568999999887776 44555553 23 479999999999999987777764321 1
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||++++++++
T Consensus 157 v~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 157 IINSKHAMSL--PSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred EEcchHHhCc--cccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence 1111111111 12478999999999999999999999999999999887655 2334455677889999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..+.. .+.+.. +++..++++|.|++|+|.+|+...+. .++.++++| +.||+++ +|+.|||||+|||
T Consensus 235 ~~i~~~~~----~v~~~~--~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~-~ts~~~VyA~GD~ 306 (458)
T PRK06912 235 KGLNSYKK----QALFEY--EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM-QTNVPHIYACGDV 306 (458)
T ss_pred EEEEEcCC----EEEEEE--CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCe-ecCCCCEEEEeec
Confidence 99976543 234432 24445799999999999999988652 256677666 9999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
++. ++.+..|..+|+.||.++...-.. ... ...|+.|++++ ||++++++++.
T Consensus 307 ~~~-~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~--vGlte~~a~~~ 362 (458)
T PRK06912 307 IGG-IQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIAS--VGLTEKQAREQ 362 (458)
T ss_pred CCC-cccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEE--eeCCHHHHHHC
Confidence 986 478899999999999998531110 111 14488999999 99999888754
No 57
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=9.6e-36 Score=308.88 Aligned_cols=314 Identities=20% Similarity=0.264 Sum_probs=229.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+|||||||+||+++|..|++.+ .+|+|||+++...+....+ ..+.. .......++..+..+.+++.|++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~gv~~~ 74 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGL------PYFVG-GFFDDPNTMIARTPEEFIKSGIDVK 74 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCC------ceEec-cccCCHHHhhcCCHHHHHHCCCeEE
Confidence 7999999999999999999875 5899999877522110000 00000 0012233445555667788899988
Q ss_pred Ee-eEEEEEeeCCcEEEEE--CCeEEE--ecEEEEccCCCCCCCCCCCcccccCCCeeeeeecC------CCCCCCCCCE
Q 009224 174 QE-DVEFIDVKSNPFTVKS--GERKVK--CHSIVFATGATAKRLNLPREDEFWSRGISACAICD------GASPLFKGQV 242 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~~~~~~--~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~------~~~~~~~~k~ 242 (540)
.+ +|+.++.+++.+.+.. ++..+. ||+||+|||++|..|++||.+. ..+....... .......+++
T Consensus 75 ~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~---~~v~~~~~~~~~~~l~~~l~~~~~~~ 151 (444)
T PRK09564 75 TEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINL---ENVYTLKSMEDGLALKELLKDEEIKN 151 (444)
T ss_pred ecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCC---CCEEEECCHHHHHHHHHHHhhcCCCE
Confidence 65 8999999998888875 245566 9999999999999999988643 1122111110 0001134789
Q ss_pred EEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE
Q 009224 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR 316 (540)
Q Consensus 243 v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~ 316 (540)
++|||+|++|+|+|..|++.|.+|+++.+.+.+++ ....+.+.+++.||++++++++.++..++ .+..+..
T Consensus 152 vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~- 228 (444)
T PRK09564 152 IVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGED--KVEGVVT- 228 (444)
T ss_pred EEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCC--cEEEEEe-
Confidence 99999999999999999999999999998876543 23445566788999999999999996543 2332322
Q ss_pred EccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhh
Q 009224 317 KVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVT 386 (540)
Q Consensus 317 ~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~ 386 (540)
. + .++++|.+++|+|++|+..++.. +++++++|++.||+++ +|+.|||||+|||++.+ ++.+..
T Consensus 229 --~-~--~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~ 302 (444)
T PRK09564 229 --D-K--GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATT 302 (444)
T ss_pred --C-C--CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHH
Confidence 1 2 25899999999999999887764 6778888999999998 79999999999999731 356789
Q ss_pred hhchHHHHHHHHHHHHhcCc----c-eeeecCCCccCCCCcCCCCCCCC
Q 009224 387 AAGSGCIAALSVERYLVNNN----L-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 387 A~~~g~~aa~~i~~~l~~~~----~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
|..||+.+|.+|...-.... . ...|+.|++++ ||++++++++
T Consensus 303 A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~--vG~t~~~a~~ 349 (444)
T PRK09564 303 ANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAAR--TGLTEEEAKK 349 (444)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEE--ecCCHHHHHH
Confidence 99999999999864211111 1 13489999999 9999988865
No 58
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.2e-35 Score=275.53 Aligned_cols=360 Identities=23% Similarity=0.307 Sum_probs=258.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC--------CCCCcceeeccCccccCC--------CC---CCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA--------GGVPGGQLMTTTEVENFP--------GF---PDGIT 153 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~--------~~~~gg~~~~~~~~~~~~--------~~---~~~~~ 153 (540)
..+||+|||+||+|..||.++++.|++.+.+|++.. ||.|++.++..++..+.. |+ +...+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 469999999999999999999999999999999543 445665555544321110 11 11112
Q ss_pred h-----------HHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE---CCeEEEecEEEEccCCCCCCCCCCCccc
Q 009224 154 G-----------PDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS---GERKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 154 ~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~---~~~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
. .++..-+...+++.+|+++.+.-..+++. .+.+.. ....++++++|+|||+.- +++||...
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~dg~~~ii~aKnIiiATGSeV--~~~PGI~I 193 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGITI 193 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccCCCceEEeeeeEEEEeCCcc--CCCCCeEe
Confidence 1 22333344556777888888866666543 333332 235789999999999842 23455432
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEE
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVH 294 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~ 294 (540)
....+-.. ........-+++++|||+|.+|+|++..+.++|.+||+++-.+.+.+ .....++.|.+.|++|+
T Consensus 194 -DekkIVSS--tgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~ 270 (506)
T KOG1335|consen 194 -DEKKIVSS--TGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFK 270 (506)
T ss_pred -cCceEEec--CCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeE
Confidence 11111111 11111224689999999999999999999999999999999887765 45566778899999999
Q ss_pred eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCccccCCCceE
Q 009224 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 295 ~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++.+..+..+.+|.+. +.+++..++..++++||.+++++|++|.+.-+.. +++.|.+|++++|..+ +|.+|+||
T Consensus 271 l~tkv~~a~~~~dg~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f-~t~vP~i~ 348 (506)
T KOG1335|consen 271 LGTKVTSATRNGDGPVE-IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRF-QTKVPHIY 348 (506)
T ss_pred eccEEEEeeccCCCceE-EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccc-cccCCceE
Confidence 99999999999887554 8888888888999999999999999999887653 6888999999999998 99999999
Q ss_pred EccccCCCcchhhhhhhchHHHHHHHHHHHH---hcCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeeee--------
Q 009224 372 AAGDVQDHEWRQAVTAAGSGCIAALSVERYL---VNNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK-------- 438 (540)
Q Consensus 372 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l---~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-------- 438 (540)
++||+...| ..++.|-.+|-.+...|..-- ...- +...|++|+++| ||.+|+++++ .+.....+
T Consensus 349 ~IGDv~~gp-MLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvaw--VG~TEeqlkeegi~y~vgkfpF~aNsR 425 (506)
T KOG1335|consen 349 AIGDVTLGP-MLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAW--VGKTEEQLKEEGIKYKVGKFPFSANSR 425 (506)
T ss_pred EecccCCcc-hhhhhhhhhchhheeeecccCcccccCCCCceeecccceee--eccchhhHHhcCcceEeeeccccccch
Confidence 999999985 689999999988887774321 1111 336799999999 9999999986 22222221
Q ss_pred ---cCcHHHHHHHHH--hCCCeEEEEEECCC
Q 009224 439 ---HKGQYALRKLYH--ESPRLICVLYTSPT 464 (540)
Q Consensus 439 ---~~~~~~~~~~~~--~~~~~~~v~f~~~~ 464 (540)
..+.+.|.+++. ..++..-++...|.
T Consensus 426 aktn~d~eg~vKvl~d~~tdkiLGvHiigp~ 456 (506)
T KOG1335|consen 426 AKTNNDTEGFVKVLADKETDKILGVHIIGPN 456 (506)
T ss_pred hhccCCccceeEEEecCCCCcEEEEEEecCC
Confidence 223444555552 23556666666664
No 59
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=2e-34 Score=297.53 Aligned_cols=321 Identities=22% Similarity=0.299 Sum_probs=223.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-------CCCCCcceeeccCcc----cc--CCCCC---CCCChHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-------AGGVPGGQLMTTTEV----EN--FPGFP---DGITGPDL 157 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-------~~~~~gg~~~~~~~~----~~--~~~~~---~~~~~~~~ 157 (540)
.|||+|||+|++|..||.. ..|.+|+|||+.. .||.|.+.|...... .. ..++. ...++..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 4899999999999998644 4799999999854 445677666543322 01 11221 12233333
Q ss_pred HHHHHH------------H-H--HHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccC
Q 009224 158 MDRMRR------------Q-A--ERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWS 222 (540)
Q Consensus 158 ~~~~~~------------~-~--~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~ 222 (540)
.++... . . ++.|++++.+.....+ .+.+.+. ++..++||+||||||++|..|++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~V~~~-~g~~~~~d~lIiATGs~p~~p~~~~~~~--- 153 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG--PRTLRTG-DGEEITGDQIVIAAGSRPYIPPAIADSG--- 153 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec--CCEEEEC-CCcEEEeCEEEEEECCCCCCCCCCCCCC---
Confidence 333211 1 1 2268899888765553 3444443 5567999999999999998876433221
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
.......+.......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+++ +.+|+++++.
T Consensus 154 --~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~ 230 (452)
T TIGR03452 154 --VRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGR 230 (452)
T ss_pred --CEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCC
Confidence 11111111111112478999999999999999999999999999999887644 223333434 4589999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.++..++++ +.+.. .++ +++++|.+++++|++|++.++. .+++++++|++.||+++ +|+.|+|||+|
T Consensus 231 ~V~~i~~~~~~----v~v~~-~~g--~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~G 302 (452)
T TIGR03452 231 NVTAVEQDGDG----VTLTL-DDG--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG-RTSARGVWALG 302 (452)
T ss_pred EEEEEEEcCCe----EEEEE-cCC--CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc-ccCCCCEEEee
Confidence 99999876432 33332 223 4699999999999999998864 36888889999999998 79999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHHHHh-----cCcc-eeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVERYLV-----NNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
||++. +...+.|..||+.+|.+|..... .... ...|+.|++++ ||++|.++++ .+++..
T Consensus 303 D~~~~-~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~--vGlte~ea~~~g~~~~~ 368 (452)
T TIGR03452 303 DVSSP-YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIAT--VGLTEQEAREAGHDITV 368 (452)
T ss_pred cccCc-ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeee--eeCCHHHHHhcCCCeEE
Confidence 99986 47888999999999999964311 1112 25588999999 9999998875 344433
No 60
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=303.79 Aligned_cols=342 Identities=24% Similarity=0.314 Sum_probs=250.7
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc-----cccCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV-----DALSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
|++..++..|+. .|...|+++..+.++.+..++++..+.. ..........++|+|||+||+||++|..|++
T Consensus 83 p~~~~~grvc~~----~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~ 158 (564)
T PRK12771 83 PFPAVMGRVCYH----PCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR 158 (564)
T ss_pred CcchHhhCcCCc----hhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 788888988965 4677788888888999999988754321 1111224457899999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeE
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK 195 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~ 195 (540)
.|++|+++|+.+. +||.+.+ ++|.+..+.++.+...+.++++|+++..+.....+... +...
T Consensus 159 ~G~~V~v~e~~~~---~GG~l~~--------gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~-------~~~~ 220 (564)
T PRK12771 159 MGHAVTIFEAGPK---LGGMMRY--------GIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITL-------EQLE 220 (564)
T ss_pred CCCeEEEEecCCC---CCCeeee--------cCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCH-------HHHH
Confidence 9999999999888 8888764 45555666777777777888899998877432112100 0012
Q ss_pred EEecEEEEccCCCC-CCCCCCCcccccC-CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcC-CeEEEEEec
Q 009224 196 VKCHSIVFATGATA-KRLNLPREDEFWS-RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFA-RHVHLLVRR 272 (540)
Q Consensus 196 ~~~d~lviAtG~~~-~~~~ipg~~~~~~-~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g-~~v~li~~~ 272 (540)
..||+||+|||+.+ ....+++.+.... ..+..............+++++|+|+|.++++.+..+.+++ .+|+++.|.
T Consensus 221 ~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 221 GEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred hhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 35899999999874 4556777543100 00000100001112345899999999999999999888888 679999987
Q ss_pred cc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc-------------CCceEEEEccEEEEeccc
Q 009224 273 EQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD-------------TGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 273 ~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~-------------~g~~~~i~~D~vi~a~G~ 337 (540)
+. +......+.+ ..+.||+++++..+.++..++++.+ ++.+.... .++..++++|.||+|+|+
T Consensus 301 ~~~~~~~~~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 301 TREDMPAHDEEIEE-ALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred CcccCCCCHHHHHH-HHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 53 2334444444 3467999999999999987655443 55442221 345578999999999999
Q ss_pred ccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 338 SPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 338 ~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
.|+..++.. ++. +++|++.+|+.+++|+.|||||+||++.+ ++++..|+.+|+.||.+|+++|.++...
T Consensus 379 ~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g-~~~v~~Av~~G~~aA~~i~~~L~g~~~~ 449 (564)
T PRK12771 379 DIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPG-PRTVTTAIGHGKKAARNIDAFLGGEPYE 449 (564)
T ss_pred CCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCC-chHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999888763 566 77899999996669999999999999986 4799999999999999999999877643
No 61
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-34 Score=309.29 Aligned_cols=337 Identities=21% Similarity=0.320 Sum_probs=243.4
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc-------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA-------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
|++..++..|+. .|...|.++..+.++.|..++++..+.... ......+.++|+|||+|+||+++|..|
T Consensus 227 p~~~~~g~vC~~----~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L 302 (604)
T PRK13984 227 PLSMVCGRVCTH----KCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFL 302 (604)
T ss_pred CccchhhCcCCc----hHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHH
Confidence 567777777765 577788888778899999998876654321 112234678999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
+++|++|+|+|+.+. +||.+.+ +++.+....++.....+.++++|++++.++....+. .+ +.
T Consensus 303 ~~~G~~v~vie~~~~---~gG~~~~--------~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~-----~~--~~ 364 (604)
T PRK13984 303 ATMGYEVTVYESLSK---PGGVMRY--------GIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDI-----PL--EE 364 (604)
T ss_pred HHCCCeEEEEecCCC---CCceEee--------cCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCcC-----CH--HH
Confidence 999999999999887 7887764 444445556777777788899999998885443221 11 11
Q ss_pred eEEEecEEEEccCCC-CCCCCCCCccccc-CCCeeeeeecC-----CCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC--
Q 009224 194 RKVKCHSIVFATGAT-AKRLNLPREDEFW-SRGISACAICD-----GASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-- 264 (540)
Q Consensus 194 ~~~~~d~lviAtG~~-~~~~~ipg~~~~~-~~~~~~~~~~~-----~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-- 264 (540)
....||+||+|||+. ++.+++||.+... ...+....... .......+++|+|||||++|+|+|..+.+++.
T Consensus 365 ~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~ 444 (604)
T PRK13984 365 LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKME 444 (604)
T ss_pred HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccc
Confidence 235799999999987 6788899975311 00111111000 00111247899999999999999999988753
Q ss_pred ----eEEEEEecc---cccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc--------------cCCce
Q 009224 265 ----HVHLLVRRE---QLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV--------------DTGEE 323 (540)
Q Consensus 265 ----~v~li~~~~---~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~--------------~~g~~ 323 (540)
+|+++.... .+......+.+. .+.||+++++..+.++..+ +++++++.+... .++++
T Consensus 445 ~g~~~V~v~~~~r~~~~~~~~~~e~~~~-~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~ 522 (604)
T PRK13984 445 YGEVNVKVTSLERTFEEMPADMEEIEEG-LEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQ 522 (604)
T ss_pred cCceEEEEeccccCcccCCCCHHHHHHH-HHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCce
Confidence 788764321 222233334443 3579999999999998653 466777766432 12345
Q ss_pred EEEEccEEEEecccccCcccccc----ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 324 SVLEAKGLFYGIGHSPNSQLLQG----QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 324 ~~i~~D~vi~a~G~~p~~~~~~~----~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
.++++|.||+|+|++|++.++.. ++++ .+|+|.||+++ +|++|+|||+||++..+ .+..|+.+|+.||.+|+
T Consensus 523 ~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~-~Ts~~gVfAaGD~~~~~--~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 523 IIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYG-QTSIPWLFAGGDIVHGP--DIIHGVADGYWAAEGID 598 (604)
T ss_pred EEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCC-ccCCCCEEEecCcCCch--HHHHHHHHHHHHHHHHH
Confidence 68999999999999999887753 2444 46889999987 89999999999999863 56889999999999999
Q ss_pred HHHhcC
Q 009224 400 RYLVNN 405 (540)
Q Consensus 400 ~~l~~~ 405 (540)
++|+++
T Consensus 599 ~~L~~~ 604 (604)
T PRK13984 599 MYLRKQ 604 (604)
T ss_pred HHhccC
Confidence 999753
No 62
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=4.3e-34 Score=311.15 Aligned_cols=286 Identities=17% Similarity=0.180 Sum_probs=216.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHc----CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA----NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~----g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
++|||||+|+||+.+|..|+++ +++|+||++++...+....+.. + +. .....++......++++.|+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~------~--~~-~~~~~~l~~~~~~~~~~~gI 74 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSS------Y--FS-HHTAEELSLVREGFYEKHGI 74 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchH------h--Hc-CCCHHHccCCCHHHHHhCCC
Confidence 5899999999999999999865 4799999988763322211111 1 11 12334444445667788899
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAV 245 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~V 245 (540)
+++.+ +|+.+|.+.+.+.+. ++..+.||+||||||++|+.|++||.+.. .+......... .....+++++|
T Consensus 75 ~~~~g~~V~~Id~~~~~V~~~-~G~~i~yD~LVIATGs~p~~p~ipG~~~~---~v~~~rt~~d~~~l~~~~~~~k~vvV 150 (847)
T PRK14989 75 KVLVGERAITINRQEKVIHSS-AGRTVFYDKLIMATGSYPWIPPIKGSETQ---DCFVYRTIEDLNAIEACARRSKRGAV 150 (847)
T ss_pred EEEcCCEEEEEeCCCcEEEEC-CCcEEECCEEEECCCCCcCCCCCCCCCCC---CeEEECCHHHHHHHHHHHhcCCeEEE
Confidence 99998 689999877655544 56789999999999999999999997641 11111111111 01235789999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~ 319 (540)
||+|++|+|+|..|+++|.+|+++++.+.+++ ....+.+.+++.||+++++..+.++..+..+....+.+.
T Consensus 151 IGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--- 227 (847)
T PRK14989 151 VGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA--- 227 (847)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC---
Confidence 99999999999999999999999999887654 345666778899999999999999976543333344442
Q ss_pred CCceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCCc---chhhhhhhchHHHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---WRQAVTAAGSGCIAA 395 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---~~~~~~A~~~g~~aa 395 (540)
+++++++|.||+|+|++|++.++. .+++++++|+|.||+++ +|+.|+|||+|||+... +..+..|..+|+.||
T Consensus 228 --dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l-~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa 304 (847)
T PRK14989 228 --DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSC-QTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAV 304 (847)
T ss_pred --CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCC-cCCCCCEEEeecceeEcCcccccHHHHHHHHHHHH
Confidence 245699999999999999999875 47888999999999998 89999999999999742 346677888899888
Q ss_pred HHHH
Q 009224 396 LSVE 399 (540)
Q Consensus 396 ~~i~ 399 (540)
.+|.
T Consensus 305 ~~i~ 308 (847)
T PRK14989 305 DHLL 308 (847)
T ss_pred HHhc
Confidence 8885
No 63
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=2.2e-33 Score=281.37 Aligned_cols=296 Identities=28% Similarity=0.359 Sum_probs=212.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+++|..|++.|++|+++|+.+. ++|.+... .+......+......+.+.+.++++
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gg~~~~~--------~~~~~~~~~~~~~~~~~l~~~~i~~ 85 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE---PGGLMLFG--------IPEFRIPIERVREGVKELEEAGVVF 85 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC---CCceeeec--------CcccccCHHHHHHHHHHHHhCCeEE
Confidence 347999999999999999999999999999999887 78776542 1111112233444445566679999
Q ss_pred EEeeEEE-EEe----eCCcEEEE---ECCeEEEecEEEEccCC-CCCCCCCCCcccccCCCe-eee----eecCC---C-
Q 009224 173 HQEDVEF-IDV----KSNPFTVK---SGERKVKCHSIVFATGA-TAKRLNLPREDEFWSRGI-SAC----AICDG---A- 234 (540)
Q Consensus 173 ~~~~v~~-i~~----~~~~~~v~---~~~~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~-~~~----~~~~~---~- 234 (540)
+.++... ++. ..+.+... .++..+.||+||||||+ .++.|++||.+....... ... ..... .
T Consensus 86 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T PRK12770 86 HTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWE 165 (352)
T ss_pred ecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccc
Confidence 8884443 221 11222111 12224789999999999 478888998653111100 000 00000 0
Q ss_pred -CCCCCCCEEEEEeCCccHHHHHHHHHhcCCe-EEEEEecccccc--cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 235 -SPLFKGQVLAVVGGGDTATEEAIYLTKFARH-VHLLVRREQLRA--SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 235 -~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~-v~li~~~~~~~~--~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
.....+++++|||+|++|+|+|..|.+.|.+ |+++.++..... ...... .|++.||++++++.+.++... +++
T Consensus 166 ~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~-~l~~~gi~i~~~~~v~~i~~~--~~~ 242 (352)
T PRK12770 166 KVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIE-RLIARGVEFLELVTPVRIIGE--GRV 242 (352)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHH-HHHHcCCEEeeccCceeeecC--CcE
Confidence 0123478999999999999999999988886 999998754322 233333 478899999999999998765 335
Q ss_pred eeEEEEEc---------------cCCceEEEEccEEEEecccccCccccc--cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 311 SGILLRKV---------------DTGEESVLEAKGLFYGIGHSPNSQLLQ--GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 311 ~~v~~~~~---------------~~g~~~~i~~D~vi~a~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
..+.+.+. .+++++.+++|.+|+++|++|++.+.. .++.++++|++.+|+++ +|+.|+||++
T Consensus 243 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~-~t~~~~vyai 321 (352)
T PRK12770 243 EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKH-MTSREGVFAA 321 (352)
T ss_pred eEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCc-ccCCCCEEEE
Confidence 55555432 135567899999999999999988765 46778888999999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
|||+..+ ..+..|+.+|+.||.+|.++|..
T Consensus 322 GD~~~~~-~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 322 GDVVTGP-SKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred cccccCc-chHHHHHHHHHHHHHHHHHHHhc
Confidence 9999863 68899999999999999999864
No 64
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.4e-33 Score=285.18 Aligned_cols=289 Identities=20% Similarity=0.249 Sum_probs=215.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCC-CCCChHHHHHHHHHHHHHhCCE
Q 009224 96 NVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP-DGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
+|||||||+||+.+|.+|+++ +++|+|||+++...+.. .+|.+. ......++...+.+.+++++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~gv~ 70 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG----------MLPGMIAGHYSLDEIRIDLRRLARQAGAR 70 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc----------hhhHHHheeCCHHHhcccHHHHHHhcCCE
Confidence 589999999999999999754 68999999876521111 111211 1234456666777888889999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeee-----ecCCCCCCCCCCEEE
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACA-----ICDGASPLFKGQVLA 244 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~-----~~~~~~~~~~~k~v~ 244 (540)
++.++|+.+|.+++.+.+. ++++++||+||||||+.+..|.+||..... ...+.... ..........+++++
T Consensus 71 ~~~~~v~~id~~~~~V~~~-~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 149 (364)
T TIGR03169 71 FVIAEATGIDPDRRKVLLA-NRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLA 149 (364)
T ss_pred EEEEEEEEEecccCEEEEC-CCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 9999999999998877665 566799999999999999999999854311 11111110 001110112467999
Q ss_pred EEeCCccHHHHHHHHHhc----C--CeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeE
Q 009224 245 VVGGGDTATEEAIYLTKF----A--RHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGI 313 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~----g--~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v 313 (540)
|||+|.+|+|+|..|.+. | .+|+++ +.+.+.. ......+.+++.||++++++.+.++..+ .+
T Consensus 150 VvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v 222 (364)
T TIGR03169 150 VVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------AL 222 (364)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eE
Confidence 999999999999998753 3 489999 4444432 3455666788999999999999988643 25
Q ss_pred EEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc----chhhhhhhc
Q 009224 314 LLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE----WRQAVTAAG 389 (540)
Q Consensus 314 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~----~~~~~~A~~ 389 (540)
.+. ++.++++|.+|+|+|.+|+..+...++.++++|++.||++++.++.|||||+|||+..+ ++.+..|+.
T Consensus 223 ~~~-----~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~ 297 (364)
T TIGR03169 223 ILA-----DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVR 297 (364)
T ss_pred EeC-----CCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHH
Confidence 442 23579999999999999997666667778889999999998334999999999998631 356788999
Q ss_pred hHHHHHHHHHHHHhcCcc
Q 009224 390 SGCIAALSVERYLVNNNL 407 (540)
Q Consensus 390 ~g~~aa~~i~~~l~~~~~ 407 (540)
||+.+|.+|.+.+.++.+
T Consensus 298 ~g~~~a~ni~~~l~g~~~ 315 (364)
T TIGR03169 298 QAPILAANLRASLRGQPL 315 (364)
T ss_pred hHHHHHHHHHHHhcCCCC
Confidence 999999999999987654
No 65
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=4e-33 Score=282.48 Aligned_cols=284 Identities=20% Similarity=0.238 Sum_probs=207.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH-HHHHHHHhCCE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR-MRRQAERWGAE 171 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 171 (540)
++|||||||+||+++|..|++. ..+|+||++++...+....+. + .+.......++... ..++.+++|++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~-----~---~~~~~~~~~~~~~~~~~~~~~~~gv~ 74 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLS-----H---VFSQGQRADDLTRQSAGEFAEQFNLR 74 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCc-----H---HHhCCCCHHHhhcCCHHHHHHhCCCE
Confidence 5899999999999999999886 468999998664221111110 1 11122344555443 45667788999
Q ss_pred EEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc-CCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW-SRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~-~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.+ +|+.++.+++.++ .++..+.||+||||||+.|..|++||.+... ...+..+..... ....+++++|||+|
T Consensus 75 ~~~~~~V~~id~~~~~v~--~~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~--~~~~~~~vvViGgG 150 (377)
T PRK04965 75 LFPHTWVTDIDAEAQVVK--SQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAET--QLRDAQRVLVVGGG 150 (377)
T ss_pred EECCCEEEEEECCCCEEE--ECCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHH--HhhcCCeEEEECCC
Confidence 9876 8999998776554 4677899999999999999999999965310 011111111111 12357899999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCce
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE 323 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~ 323 (540)
++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..+.++ ..+.+ .++
T Consensus 151 ~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~-----~~g 223 (377)
T PRK04965 151 LIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG--IRATL-----DSG 223 (377)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE--EEEEE-----cCC
Confidence 9999999999999999999999887543 2344556678899999999999999876431 12333 234
Q ss_pred EEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---chhhhhhhchHHHHHHHHH
Q 009224 324 SVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---WRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 324 ~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---~~~~~~A~~~g~~aa~~i~ 399 (540)
.++++|.+|+|+|.+|++.++.. ++..+ +| +.||+++ +|+.|||||+|||+... ...+..|+.||+.||.+|.
T Consensus 224 ~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l-~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 224 RSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYL-QTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL 300 (377)
T ss_pred cEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCc-ccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc
Confidence 57999999999999999987653 55554 34 9999988 89999999999999632 2356678899999999986
Q ss_pred H
Q 009224 400 R 400 (540)
Q Consensus 400 ~ 400 (540)
.
T Consensus 301 g 301 (377)
T PRK04965 301 G 301 (377)
T ss_pred C
Confidence 4
No 66
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=287.32 Aligned_cols=284 Identities=18% Similarity=0.183 Sum_probs=200.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++|||||||+||++||..|++.|. +|+|++++....+.. +.....+..... . ........+.+.+.+++
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r-----~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~i~ 74 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYER-----PPLSKSMLLEDS-P--QLQQVLPANWWQENNVH 74 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCC-----CCCCHHHHCCCC-c--cccccCCHHHHHHCCCE
Confidence 3689999999999999999999976 799999876522110 000000000000 0 00000112345678999
Q ss_pred EEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVV 246 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~Vv 246 (540)
++.+ .|+.++.+++.+.+. ++..+.||+||||||++|+.+++++... ..+......... ..+..+++++||
T Consensus 75 ~~~g~~V~~id~~~~~v~~~-~g~~~~yd~LViATGs~~~~~p~~~~~~---~~v~~~~~~~da~~l~~~~~~~~~vvVi 150 (396)
T PRK09754 75 LHSGVTIKTLGRDTRELVLT-NGESWHWDQLFIATGAAARPLPLLDALG---ERCFTLRHAGDAARLREVLQPERSVVIV 150 (396)
T ss_pred EEcCCEEEEEECCCCEEEEC-CCCEEEcCEEEEccCCCCCCCCCCCcCC---CCEEecCCHHHHHHHHHHhhcCCeEEEE
Confidence 9988 688999887766665 5678999999999999998777665322 112221111111 112357899999
Q ss_pred eCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC
Q 009224 247 GGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320 (540)
Q Consensus 247 G~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~ 320 (540)
|+|.+|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+. .+ .+.+ .
T Consensus 151 GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~-~v~l---~- 223 (396)
T PRK09754 151 GAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGE--KV-ELTL---Q- 223 (396)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCC--EE-EEEE---C-
Confidence 9999999999999999999999999887643 23445556778899999999999997632 11 1332 2
Q ss_pred CceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchH
Q 009224 321 GEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSG 391 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g 391 (540)
+++.+++|.||+++|.+|++.++.. ++.. +++|.||+++ +|+.|||||+|||+..+ ...+..|..||
T Consensus 224 -~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~--~~gi~vd~~~-~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg 299 (396)
T PRK09754 224 -SGETLQADVVIYGIGISANDQLAREANLDT--ANGIVIDEAC-RTCDPAIFAGGDVAITRLDNGALHRCESWENANNQA 299 (396)
T ss_pred -CCCEEECCEEEECCCCChhhHHHHhcCCCc--CCCEEECCCC-ccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHH
Confidence 2346999999999999999887642 4443 4669999998 89999999999999531 13457899999
Q ss_pred HHHHHHHHH
Q 009224 392 CIAALSVER 400 (540)
Q Consensus 392 ~~aa~~i~~ 400 (540)
+.||.+|..
T Consensus 300 ~~aa~ni~g 308 (396)
T PRK09754 300 QIAAAAMLG 308 (396)
T ss_pred HHHHHHhcC
Confidence 999999963
No 67
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=9.8e-33 Score=301.31 Aligned_cols=281 Identities=20% Similarity=0.264 Sum_probs=211.2
Q ss_pred EEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 97 VVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 97 vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
|||||||+||+++|.+|+++ +++|+|||+++...+....+. . .+.......++.....+++++.+++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~------~--~l~g~~~~~~l~~~~~~~~~~~gv~~~ 72 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLS------S--VLQGEADLDDITLNSKDWYEKHGITLY 72 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccccccc------H--HHCCCCCHHHccCCCHHHHHHCCCEEE
Confidence 68999999999999999876 479999998876221111110 0 011112334444455667788999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~VvG~ 248 (540)
.+ +|+.+|.+++.+.+. ++..+.||+||||||+.|+.|++||.+.. ++......+.. .....+++++|||+
T Consensus 73 ~g~~V~~Id~~~k~V~~~-~g~~~~yD~LVlATGs~p~~p~ipG~~~~---~v~~~rt~~d~~~i~~~~~~~k~vvVVGg 148 (785)
T TIGR02374 73 TGETVIQIDTDQKQVITD-AGRTLSYDKLILATGSYPFILPIPGADKK---GVYVFRTIEDLDAIMAMAQRFKKAAVIGG 148 (785)
T ss_pred cCCeEEEEECCCCEEEEC-CCcEeeCCEEEECCCCCcCCCCCCCCCCC---CEEEeCCHHHHHHHHHHhhcCCeEEEECC
Confidence 88 799999887766554 66789999999999999999999997641 22222111111 01135789999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE 322 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~ 322 (540)
|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+. .+..+.+.+
T Consensus 149 G~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~d----- 221 (785)
T TIGR02374 149 GLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKD----- 221 (785)
T ss_pred CHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECC-----
Confidence 99999999999999999999999887654 24556667888999999999999997653 344555532
Q ss_pred eEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCCc---chhhhhhhchHHHHHHHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---WRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---~~~~~~A~~~g~~aa~~i 398 (540)
++++++|+||+++|++|++.++. .+++++ |+|.||+++ +|+.|+|||+|||+..+ +..+..|..||+.+|.+|
T Consensus 222 G~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~-~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni 298 (785)
T TIGR02374 222 GSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSM-QTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHI 298 (785)
T ss_pred CCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCc-ccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHh
Confidence 35699999999999999999875 356554 679999998 89999999999999742 245677889999999998
Q ss_pred H
Q 009224 399 E 399 (540)
Q Consensus 399 ~ 399 (540)
.
T Consensus 299 ~ 299 (785)
T TIGR02374 299 C 299 (785)
T ss_pred c
Confidence 5
No 68
>PLN02852 ferredoxin-NADP+ reductase
Probab=100.00 E-value=2.7e-31 Score=270.75 Aligned_cols=292 Identities=22% Similarity=0.291 Sum_probs=214.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHH--cCCceEEEcCCCCCCCCcceeeccCccccCCCC-CCCCChHHHHHHHHHHHHHh
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAAR--ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-PDGITGPDLMDRMRRQAERW 168 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~--~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (540)
...++|+||||||||++||..|++ .|++|+|||+.+. +||++.+ +. |++.....+.+.+...+...
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~---pgGlvr~--------gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT---PFGLVRS--------GVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC---CcceEee--------ccCCCcchhHHHHHHHHHHHHHC
Confidence 345789999999999999999987 6999999999988 9998875 22 44455566777777778888
Q ss_pred CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeeee----cCC-------CCC
Q 009224 169 GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACAI----CDG-------ASP 236 (540)
Q Consensus 169 ~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~~----~~~-------~~~ 236 (540)
+++++.+.....+ +++ +.....||+||+|||+.+ +.+++||.+.. ++..... ..+ ...
T Consensus 93 ~v~~~~nv~vg~d-----vtl--~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~---gV~~a~~fl~~~ng~~d~~~~~~~ 162 (491)
T PLN02852 93 RVSFFGNVTLGRD-----VSL--SELRDLYHVVVLAYGAESDRRLGIPGEDLP---GVLSAREFVWWYNGHPDCVHLPPD 162 (491)
T ss_pred CeEEEcCEEECcc-----ccH--HHHhhhCCEEEEecCCCCCCCCCCCCCCCC---CeEEHHHHHHHhhcchhhhhhhhc
Confidence 8988876333222 222 222347999999999985 77889997641 1211110 111 011
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhc--------------------C-CeEEEEEecccccc--c----H----------
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKF--------------------A-RHVHLLVRREQLRA--S----R---------- 279 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~li~~~~~~~~--~----~---------- 279 (540)
...+++|+|||+|++|+|+|..|.+. + .+|+++.|+..... . .
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~ 242 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRV 242 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCce
Confidence 23689999999999999999998764 4 47999999874211 0 0
Q ss_pred ---------------------------HHHHHHhcC---------CCeEEEeCceEEEEeeC--CCCceeeEEEEEcc--
Q 009224 280 ---------------------------AMQDRVFNN---------PNITVHFNTETVDVVSN--TKGQMSGILLRKVD-- 319 (540)
Q Consensus 280 ---------------------------~~~~~~l~~---------~gv~~~~~~~v~~i~~~--~~g~~~~v~~~~~~-- 319 (540)
+++.+...+ .+|.+++...+++|..+ ++++++++.+..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~ 322 (491)
T PLN02852 243 RIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLE 322 (491)
T ss_pred eechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecC
Confidence 011111111 57999999999999853 34689888887432
Q ss_pred ------------CCceEEEEccEEEEecccc--cCccc-cc--cceeccCCCCEEeCCCccccCCCceEEccccCCCcch
Q 009224 320 ------------TGEESVLEAKGLFYGIGHS--PNSQL-LQ--GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR 382 (540)
Q Consensus 320 ------------~g~~~~i~~D~vi~a~G~~--p~~~~-~~--~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~ 382 (540)
+|+.++++||.||.++|++ |...+ +. .++..+.+|+|.+|..+ +|+.|||||+|||..++.+
T Consensus 323 ~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~-~T~ipGvyAaGDi~~Gp~g 401 (491)
T PLN02852 323 GAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASG-ADTEPGLYVVGWLKRGPTG 401 (491)
T ss_pred CCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCC-ccCCCCEEEeeeEecCCCC
Confidence 3556789999999999998 55553 22 24667788999999877 7999999999999998878
Q ss_pred hhhhhhchHHHHHHHHHHHHhcC
Q 009224 383 QAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.+..++.+|+.++.+|.+++...
T Consensus 402 vI~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 402 IIGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred eeeecHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999998764
No 69
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.98 E-value=1.4e-31 Score=259.59 Aligned_cols=288 Identities=24% Similarity=0.315 Sum_probs=225.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+.++|||+|++|..|+..+++.|. +++|+-+.....+..- .++.+.. .....+.....++.+++++
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~---------~Ls~~~~-~~~~~~a~r~~e~Yke~gI 142 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA---------RLSKFLL-TVGEGLAKRTPEFYKEKGI 142 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch---------hccccee-eccccccccChhhHhhcCc
Confidence 35789999999999999999999985 6777764433111110 0011110 1123444555668899999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC----CCCCCCEEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS----PLFKGQVLAV 245 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~----~~~~~k~v~V 245 (540)
+++.+ .|+.+|...+.+.+. +++.++|++++||||+.++++++||.+. ..+.+.....+.. .....++|++
T Consensus 143 e~~~~t~v~~~D~~~K~l~~~-~Ge~~kys~LilATGs~~~~l~~pG~~~---~nv~~ireieda~~l~~~~~~~~~vV~ 218 (478)
T KOG1336|consen 143 ELILGTSVVKADLASKTLVLG-NGETLKYSKLIIATGSSAKTLDIPGVEL---KNVFYLREIEDANRLVAAIQLGGKVVC 218 (478)
T ss_pred eEEEcceeEEeeccccEEEeC-CCceeecceEEEeecCccccCCCCCccc---cceeeeccHHHHHHHHHHhccCceEEE
Confidence 99988 899999999988877 7899999999999999999999999873 3333332222211 1234788999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~ 319 (540)
+|+|++|+|+|..|...+.+||++.+.+.+++ ....++.++++.||++++++.+.+++.+.+|++..|.+.+
T Consensus 219 vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d-- 296 (478)
T KOG1336|consen 219 VGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD-- 296 (478)
T ss_pred ECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc--
Confidence 99999999999999999999999999987765 5667777899999999999999999999989988888854
Q ss_pred CCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhhch
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAAGS 390 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~~ 390 (540)
+++++||.|++.+|.+|++.+++.+..++..|+|.||+++ +|++|||||+||+++.++ ..+..|..+
T Consensus 297 ---g~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f-~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~ 372 (478)
T KOG1336|consen 297 ---GKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFF-QTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARAS 372 (478)
T ss_pred ---CCEeccCeEEEeeccccccccccccceecccCCEeehhce-eeccCCcccccceeecccccccccccchHHHHHHHH
Confidence 5779999999999999999999877778999999999999 999999999999998643 233455555
Q ss_pred HHHHHHHHHH
Q 009224 391 GCIAALSVER 400 (540)
Q Consensus 391 g~~aa~~i~~ 400 (540)
|+.|...+..
T Consensus 373 g~~av~ai~~ 382 (478)
T KOG1336|consen 373 GRQAVKAIKM 382 (478)
T ss_pred HHhhhhhhhc
Confidence 6655555543
No 70
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=240.04 Aligned_cols=330 Identities=21% Similarity=0.269 Sum_probs=230.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcC---CCC-------------CCCCcceeeccCcc----c--cCCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEG---YQA-------------GGVPGGQLMTTTEV----E--NFPGFP 149 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~---~~~-------------~~~~gg~~~~~~~~----~--~~~~~~ 149 (540)
...||++|||||.+||+||.+++..|.+|.++|- .+. ||.|...+...+.. + .-.||.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3459999999999999999999999999999984 121 22232222222111 0 001221
Q ss_pred -----CCCChHHHHHHHHHHHHHhC----CEEEEeeEEEEEeeC-----CcEEEEE---CCeEEEecEEEEccCCCCCCC
Q 009224 150 -----DGITGPDLMDRMRRQAERWG----AELHQEDVEFIDVKS-----NPFTVKS---GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~~~----v~~~~~~v~~i~~~~-----~~~~v~~---~~~~~~~d~lviAtG~~~~~~ 212 (540)
-...+..+.+..++.++..+ +.++..+|..+..-+ +.+.... ..+.+.++++|||||.+|+.|
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence 12234445555555555543 223333555443221 2222221 235688999999999999999
Q ss_pred CCCCcccccCCCeeeeeecCCC-CCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhc
Q 009224 213 NLPREDEFWSRGISACAICDGA-SPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFN 287 (540)
Q Consensus 213 ~ipg~~~~~~~~~~~~~~~~~~-~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~ 287 (540)
+|||..++... .++. ...+.+.+-+|||+|++|+|+|.+|...|.+|++..|+-.+.. ..+.+.+.++
T Consensus 177 ~IpG~~Ey~IT-------SDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~ 249 (503)
T KOG4716|consen 177 DIPGAKEYGIT-------SDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHME 249 (503)
T ss_pred CCCCceeeeec-------ccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHH
Confidence 99997653221 1111 1224577888999999999999999999999999999866655 3455666788
Q ss_pred CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccC-CCCEEeCCCcc
Q 009224 288 NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDS-SGYVIVEEGTA 363 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~-~g~i~vd~~~~ 363 (540)
+.||+|.....+.+++..+++++. |...+..++++-+-++|.|+||+|+++.++-++. ++..|+ .|.|++|+.-
T Consensus 250 ~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e- 327 (503)
T KOG4716|consen 250 ERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEE- 327 (503)
T ss_pred HhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHH-
Confidence 999999999999999888777633 5455555555556679999999999999876643 677754 5889999988
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCCCCCcc
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRDVQEGF 432 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 432 (540)
+|++|+|||+||+....+.....|+..||..|+.+-.-- ...+ ..-.|++.|+.. ||++|+++-+.|
T Consensus 328 ~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c--~GlsEE~Ai~k~ 399 (503)
T KOG4716|consen 328 ATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGC--VGLSEEDAIEKY 399 (503)
T ss_pred hcCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccc--cCCCHHHHHHHh
Confidence 999999999999998666778899999999998874311 1112 225588899999 999998776544
No 71
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.97 E-value=4.9e-30 Score=264.50 Aligned_cols=299 Identities=19% Similarity=0.260 Sum_probs=214.4
Q ss_pred HHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCC-CC-hHHHHHHH-HHHHHHhCCEEEEe-eEEEEE
Q 009224 108 TAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG-IT-GPDLMDRM-RRQAERWGAELHQE-DVEFID 181 (540)
Q Consensus 108 ~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~v~~~~~-~v~~i~ 181 (540)
+||.+|++. .++|+|||+++. .. ..+.. ++.+... .. ..++..+. ...+.++|++++.+ +|+.++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~---~~---~~~~~---l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id 71 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTED---VS---FANCG---LPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVN 71 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCc---ee---EEcCC---CCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEE
Confidence 478888887 478999998765 11 11100 1111111 11 22333333 34458889998765 999999
Q ss_pred eeCCcEEEEEC--CeEEE--ecEEEEccCCCCCCCCCCCcccccCCCeeeeeec------CCCCCCCCCCEEEEEeCCcc
Q 009224 182 VKSNPFTVKSG--ERKVK--CHSIVFATGATAKRLNLPREDEFWSRGISACAIC------DGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 182 ~~~~~~~v~~~--~~~~~--~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~------~~~~~~~~~k~v~VvG~G~~ 251 (540)
.+++.+.+... +..+. ||+||||||++|+.|++||.+. ..+...... ........+++|+|||+|++
T Consensus 72 ~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~---~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~ 148 (427)
T TIGR03385 72 DERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINL---DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYI 148 (427)
T ss_pred CCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCC---CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHH
Confidence 98888888753 35677 9999999999999999998652 111111111 01111135789999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEeccccc-c-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLR-A-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESV 325 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~-~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~ 325 (540)
|+|+|..|++.|.+|+++.+.+.+. . ....+.+.+++.||++++++.+.++..++. + +.+. + +.+
T Consensus 149 g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~--v~~~---~--g~~ 219 (427)
T TIGR03385 149 GIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER--V--KVFT---S--GGV 219 (427)
T ss_pred HHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC--E--EEEc---C--CCE
Confidence 9999999999999999999987652 2 234455667889999999999999976532 1 2332 2 346
Q ss_pred EEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhhchHHHHH
Q 009224 326 LEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAAGSGCIAA 395 (540)
Q Consensus 326 i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~~~g~~aa 395 (540)
+++|.+|+|+|.+|+++++.. +++++++|++.||+++ +|+.|+|||+|||+..+ ...+..|..||+.||
T Consensus 220 i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~-~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a 298 (427)
T TIGR03385 220 YQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKF-QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAG 298 (427)
T ss_pred EEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCc-EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHH
Confidence 999999999999999988764 6788889999999998 89999999999999631 246788999999999
Q ss_pred HHHHHHHhcCc-----ceeeecCCCccCCCCcCCCCCCCC
Q 009224 396 LSVERYLVNNN-----LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 396 ~~i~~~l~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+|...-.... ....|+.|++++ ||+++.+++.
T Consensus 299 ~ni~g~~~~~~~~~~~~~~~~~~~~~a~--vG~t~~~a~~ 336 (427)
T TIGR03385 299 ENIAGNDIEFKGVLGTNITKFFDLTIAS--TGVTENEAKK 336 (427)
T ss_pred HHhcCCCCCCCCcceeeEEEEcCeEEEE--ecCCHHHHHH
Confidence 99964211111 115588999999 9999887764
No 72
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.97 E-value=3.6e-29 Score=238.09 Aligned_cols=302 Identities=20% Similarity=0.221 Sum_probs=224.1
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW- 168 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (540)
...++++|||+|+|++|++++..|...-++|++|. |...+.+++.....+ -.....+.+.+..+...++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVS-------PRnyFlFTPLLpS~~--vGTve~rSIvEPIr~i~r~k~ 121 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVS-------PRNYFLFTPLLPSTT--VGTVELRSIVEPIRAIARKKN 121 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEec-------cccceEEeeccCCcc--ccceeehhhhhhHHHHhhccC
Confidence 34567899999999999999999999899999999 444455443221111 01233456778888777766
Q ss_pred -CCEEEEeeEEEEEeeCCcEEEEE---CC----eEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeeeec-------
Q 009224 169 -GAELHQEDVEFIDVKSNPFTVKS---GE----RKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACAIC------- 231 (540)
Q Consensus 169 -~v~~~~~~v~~i~~~~~~~~v~~---~~----~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~~~------- 231 (540)
++.++..+.+.+|++++.++++. ++ ..+.|||||+|+|+.++.+++||..+.. -..++++...
T Consensus 122 ~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~ 201 (491)
T KOG2495|consen 122 GEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDN 201 (491)
T ss_pred CCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHH
Confidence 56778889999999999888865 33 5689999999999999999999965421 0111111100
Q ss_pred ---CCC-----CCCCCCCEEEEEeCCccHHHHHHHHHhc--------------CCeEEEEEecccccc-----cHHHHHH
Q 009224 232 ---DGA-----SPLFKGQVLAVVGGGDTATEEAIYLTKF--------------ARHVHLLVRREQLRA-----SRAMQDR 284 (540)
Q Consensus 232 ---~~~-----~~~~~~k~v~VvG~G~~a~e~a~~l~~~--------------g~~v~li~~~~~~~~-----~~~~~~~ 284 (540)
... +...+--+++|||||++|+|+|.+|+.. ..+||+++..+.++. ..++.++
T Consensus 202 le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~ 281 (491)
T KOG2495|consen 202 LEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAEN 281 (491)
T ss_pred HHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHH
Confidence 000 0112345799999999999999998744 247999999987765 5667777
Q ss_pred HhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCC--CEEeCCCc
Q 009224 285 VFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSG--YVIVEEGT 362 (540)
Q Consensus 285 ~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g--~i~vd~~~ 362 (540)
.+.+.||++..++.|+.+++.. +.... .+|+.++|++.+++|+||..|..-.-.....+++.| .+.+|+++
T Consensus 282 ~f~~~~I~~~~~t~Vk~V~~~~------I~~~~-~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~L 354 (491)
T KOG2495|consen 282 QFVRDGIDLDTGTMVKKVTEKT------IHAKT-KDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWL 354 (491)
T ss_pred HhhhccceeecccEEEeecCcE------EEEEc-CCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeecee
Confidence 8899999999999999998764 55544 367889999999999999987643222122344444 79999999
Q ss_pred cccCCCceEEccccCCC-c-chhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 363 AKTSVEGVFAAGDVQDH-E-WRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 363 ~~t~~~~iya~GD~~~~-~-~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
+..+.+||||+|||+.. . ..++..|.+||..+|.++....+..+.
T Consensus 355 rV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~ 401 (491)
T KOG2495|consen 355 RVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNL 401 (491)
T ss_pred eccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88999999999999942 2 348899999999999999988776665
No 73
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.97 E-value=9.5e-30 Score=256.80 Aligned_cols=343 Identities=24% Similarity=0.305 Sum_probs=259.3
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc------ccCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD------ALSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
+++..+..+|| ....|...|.+.....|+.|..++++..+... ...+.....++|+|||||||||++|..|+
T Consensus 66 ~~p~~~gRvcp--~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~ 143 (457)
T COG0493 66 NLPAITGRVCP--LGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLS 143 (457)
T ss_pred CCccccCccCC--CCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHH
Confidence 46677778884 33457888888878889999999888765322 22333445689999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|+.||++|+.+. +||.+.+ ++|++....++.+...+.+++.|++|+.+.....+ ++.+..
T Consensus 144 ~~G~~Vtv~e~~~~---~GGll~y--------GIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~-------it~~~L 205 (457)
T COG0493 144 RAGHDVTVFERVAL---DGGLLLY--------GIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD-------ITLEEL 205 (457)
T ss_pred hCCCeEEEeCCcCC---CceeEEe--------cCchhhccchHHHHHHHHHHHcCeEEEEcceECCc-------CCHHHH
Confidence 99999999999988 9999997 88888999999999999999999999988555433 111223
Q ss_pred EEEecEEEEccCC-CCCCCCCCCcccccCC-Ceeee-----eecC----CCCCCCCCCEEEEEeCCccHHHHHHHHHhcC
Q 009224 195 KVKCHSIVFATGA-TAKRLNLPREDEFWSR-GISAC-----AICD----GASPLFKGQVLAVVGGGDTATEEAIYLTKFA 263 (540)
Q Consensus 195 ~~~~d~lviAtG~-~~~~~~ipg~~~~~~~-~~~~~-----~~~~----~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g 263 (540)
.-.||+++++||+ .|+..++||.+.-... ...+. .... .......+|+|+|||+|.+++|++....++|
T Consensus 206 ~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~G 285 (457)
T COG0493 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLG 285 (457)
T ss_pred HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcC
Confidence 3457999999997 5788889987631110 00000 0000 1112234599999999999999999988888
Q ss_pred C-eEEEEEeccc---ccc----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc----------------
Q 009224 264 R-HVHLLVRREQ---LRA----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------- 319 (540)
Q Consensus 264 ~-~v~li~~~~~---~~~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------- 319 (540)
. +|+.+.+... ..+ ...+..+...++|+.+.+.....++..+++|++.++.+....
T Consensus 286 a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v 365 (457)
T COG0493 286 AKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGV 365 (457)
T ss_pred CeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccc
Confidence 7 6787753221 111 122233345678899999999999999999998887665431
Q ss_pred CCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAAL 396 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~ 396 (540)
.|+...+++|+|+.++|+.++.... ..++..+..|.+.+|..+++|+.|++||.||+..+ ...+..|+.+|+.+|.
T Consensus 366 ~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g-~~~vv~ai~eGr~aak 444 (457)
T COG0493 366 IGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRG-AALVVWAIAEGREAAK 444 (457)
T ss_pred cCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccc-hhhhhhHHhhchHHHH
Confidence 3566889999999999998885543 22577888999999999878999999999999996 3899999999999999
Q ss_pred HHH-HHHhc
Q 009224 397 SVE-RYLVN 404 (540)
Q Consensus 397 ~i~-~~l~~ 404 (540)
.|. .++.+
T Consensus 445 ~i~~~~l~~ 453 (457)
T COG0493 445 AIDKELLLG 453 (457)
T ss_pred hhhHHHHhh
Confidence 999 44443
No 74
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.96 E-value=3.8e-28 Score=271.34 Aligned_cols=285 Identities=20% Similarity=0.254 Sum_probs=209.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC-CE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG-AE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 171 (540)
..+||+|||||||||+||..|++.|++|+|+|+.+. +||++.... .........++...+.+.++.++ ++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~---~GG~~~~~~------~~~~g~~~~~~~~~~~~~l~~~~~v~ 232 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE---AGGSLLSEA------ETIDGKPAADWAAATVAELTAMPEVT 232 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC---CCCeeeccc------cccCCccHHHHHHHHHHHHhcCCCcE
Confidence 358999999999999999999999999999999887 888886532 11123445666666777777664 88
Q ss_pred EEEe-eEEEEEeeCCcEEEE-------------E--CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeee----ec
Q 009224 172 LHQE-DVEFIDVKSNPFTVK-------------S--GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACA----IC 231 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~-------------~--~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~----~~ 231 (540)
++.+ +|..+...+....+. . ....+.||+||||||+.++.+++||.+. .++.... +.
T Consensus 233 v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~---pgV~~~~~~~~~l 309 (985)
T TIGR01372 233 LLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR---PGVMLAGAARTYL 309 (985)
T ss_pred EEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC---CCcEEchHHHHHH
Confidence 8876 666664322111111 0 1126899999999999999999999764 2222221 11
Q ss_pred CCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 232 DGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 232 ~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
.. .....+++|+|||+|++|+++|..|.+.|. .|+++++.+.+. .. ..+.+++.||++++++.+.++..++ ++
T Consensus 310 ~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--~~-l~~~L~~~GV~i~~~~~v~~i~g~~--~v 383 (985)
T TIGR01372 310 NR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--PE-ARAEARELGIEVLTGHVVAATEGGK--RV 383 (985)
T ss_pred Hh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--HH-HHHHHHHcCCEEEcCCeEEEEecCC--cE
Confidence 11 123468999999999999999999999995 578888766542 23 3345688899999999999997653 46
Q ss_pred eeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCC--CCEEeCCCccccCCCceEEccccCCCcchhhh
Q 009224 311 SGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSS--GYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAV 385 (540)
Q Consensus 311 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~--g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~ 385 (540)
++|.+.. .++++++++||.|+++.|.+|++.++.. .+.++.. +++. .|+.|+||++||+++. ..+.
T Consensus 384 ~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~--~~~~ 454 (985)
T TIGR01372 384 SGVAVAR-NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGL--FGLA 454 (985)
T ss_pred EEEEEEe-cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCc--cCHH
Confidence 6677753 2356678999999999999999998753 2333332 2221 3678999999999975 5888
Q ss_pred hhhchHHHHHHHHHHHHhc
Q 009224 386 TAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 386 ~A~~~g~~aa~~i~~~l~~ 404 (540)
.|+.+|+.||..|+..++.
T Consensus 455 ~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 455 AALADGAAAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 8999999999999988875
No 75
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.96 E-value=6.9e-28 Score=247.12 Aligned_cols=281 Identities=20% Similarity=0.271 Sum_probs=200.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc------------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV------------------------------ 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~------------------------------ 142 (540)
..++|+|||||+|||+||.+|++.|++|+++|+.+. .||.|.+....
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~---vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ---VGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC---CcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 358999999999999999999999999999999888 88888764211
Q ss_pred ---ccCCCCC----------CCCChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeCCcEEEEEC--C---eEEEecEE
Q 009224 143 ---ENFPGFP----------DGITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKSNPFTVKSG--E---RKVKCHSI 201 (540)
Q Consensus 143 ---~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~~~~~v~~~--~---~~~~~d~l 201 (540)
..+|..+ .+....++.+|++.+.+++++. ++.+ +|+.++..++.|.|... + .+..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 0122221 2345688999999999999987 6565 89999988888988752 1 24579999
Q ss_pred EEccC--CCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccH
Q 009224 202 VFATG--ATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASR 279 (540)
Q Consensus 202 viAtG--~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~ 279 (540)
|+||| +.|+.|.+||.+.+.+..++...+... ..+++|+|+|||+|.+|+|+|.+|...+++|+++.|+.....
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~--~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~-- 241 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVP--DPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT-- 241 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEEecccCCc--cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc--
Confidence 99999 679999999998888777777665543 336899999999999999999999999999999999764321
Q ss_pred HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeC
Q 009224 280 AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVE 359 (540)
Q Consensus 280 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd 359 (540)
... +.....+++.+..+..+..++ .|.+.+ | +.+++|.||+|||++++..++.. .|.+.+|
T Consensus 242 --~~~-~~~~~~~v~~~~~I~~~~~~g-----~V~f~D---G--~~~~~D~Ii~~TGy~~~~pfL~~------~~~i~v~ 302 (461)
T PLN02172 242 --YEK-LPVPQNNLWMHSEIDTAHEDG-----SIVFKN---G--KVVYADTIVHCTGYKYHFPFLET------NGYMRID 302 (461)
T ss_pred --ccc-CcCCCCceEECCcccceecCC-----eEEECC---C--CCccCCEEEECCcCCccccccCc------ccceeeC
Confidence 111 122233445556666554432 266643 4 35789999999999999999763 2334444
Q ss_pred CCc--------cccC-CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 360 EGT--------AKTS-VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 360 ~~~--------~~t~-~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+.. .... .|+++.+|=.... .....+-.|++. +++.+.|+
T Consensus 303 ~~~v~~Ly~~~f~~~~~p~LafiG~~~~~--~~f~~~E~Qa~~----~a~v~sG~ 351 (461)
T PLN02172 303 ENRVEPLYKHVFPPALAPGLSFIGLPAMG--IQFVMFEIQSKW----VAAVLSGR 351 (461)
T ss_pred CCcchhhHHhhcCCCCCCcEEEEeccccc--cCchhHHHHHHH----HHHHHcCC
Confidence 322 1223 3899999965322 122333334444 44555554
No 76
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.96 E-value=5.2e-29 Score=252.54 Aligned_cols=351 Identities=17% Similarity=0.158 Sum_probs=245.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+++|||.|+||..+..++.+. -++||++-..+...+-.-++. +-++...+.+++.-.-.++.++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls--------~vl~~~~~~edi~l~~~dwy~~~~i 74 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLS--------SVLAGEKTAEDISLNRNDWYEENGI 74 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeec--------cccCCCccHHHHhccchhhHHHcCc
Confidence 36799999999999999999884 478999987665332222222 1233334556777777788999999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC-CCCCCCEEEEEeC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS-PLFKGQVLAVVGG 248 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~-~~~~~k~v~VvG~ 248 (540)
+++.+ +|+.+|++++.++.. .+..+.||.||+||||.|+.+++||.+.+............... .....++.+||||
T Consensus 75 ~L~~~~~v~~idr~~k~V~t~-~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGG 153 (793)
T COG1251 75 TLYTGEKVIQIDRANKVVTTD-AGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGG 153 (793)
T ss_pred EEEcCCeeEEeccCcceEEcc-CCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEcc
Confidence 99998 999999999887766 78899999999999999999999998753222111111111100 0124566899999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE 322 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~ 322 (540)
|..|+|+|..|.+.|.++++++..+.++. ...++.+.+++.|++++++....++... ++++++.+.+
T Consensus 154 GLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~--~~~~~vr~~D----- 226 (793)
T COG1251 154 GLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGE--DKVEGVRFAD----- 226 (793)
T ss_pred chhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcC--cceeeEeecC-----
Confidence 99999999999999999999999887754 5667777889999999999988888773 4566677644
Q ss_pred eEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHHHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~~i 398 (540)
+..+++|.||+|+|.+||+.+... ++.+++ .|+||+++ +|+.|+|||+|+|+.. -++.+..+..|++.+|.++
T Consensus 227 G~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~m-qTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl 303 (793)
T COG1251 227 GTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYM-QTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHL 303 (793)
T ss_pred CCcccceeEEEecccccccHhHHhcCcCcCC--Ceeecccc-cccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHh
Confidence 456999999999999999999865 677776 69999999 9999999999999864 2456666777777777777
Q ss_pred HHHHhc-CcceeeecCCCccCCCC-cCCCCCCCCcceeeeeecCcHHHHHHHHHhCCCeEEEEEECC
Q 009224 399 ERYLVN-NNLLIEFHQPQAEEPKK-DLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSP 463 (540)
Q Consensus 399 ~~~l~~-~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~ 463 (540)
.....+ -.....++...+.-..+ +..+.+..++-..-.........|+++..+.++.+-...|.+
T Consensus 304 ~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GD 370 (793)
T COG1251 304 CGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGD 370 (793)
T ss_pred ccCcccccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEee
Confidence 554332 11223333444433111 222222111111111112234445566666666665555544
No 77
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.96 E-value=1.7e-27 Score=253.57 Aligned_cols=320 Identities=17% Similarity=0.188 Sum_probs=215.0
Q ss_pred CCCCCccc-ceeecCcccccccceeeccCCCCCChhhhhhhhccc----------------ccc-----cCcccCCcccE
Q 009224 40 PPLSHSNS-IFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASS----------------VDA-----LSSAEKSVENV 97 (540)
Q Consensus 40 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-----~~~~~~~~~~v 97 (540)
.|++..++ ..|+ .|...|++. .+.|++|+.++++..+. ... +.+.+.+.++|
T Consensus 313 NP~p~~~G~RVCp-----~CE~aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKV 386 (1028)
T PRK06567 313 NPMVAATGHRICN-----DCSKACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNI 386 (1028)
T ss_pred CCChHhhCCccCc-----chHHHhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeE
Confidence 36788887 8884 488899888 67899999999976541 000 12234567899
Q ss_pred EEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------------------------CCcceeeccCccccCCCCCCCC
Q 009224 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------------------------VPGGQLMTTTEVENFPGFPDGI 152 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------------------------~~gg~~~~~~~~~~~~~~~~~~ 152 (540)
+||||||||++||+.|++.|++|+++|+...-+ .+||...+ +++ ..
T Consensus 387 aVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~y--------GIp-~R 457 (1028)
T PRK06567 387 LVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEY--------GIT-VR 457 (1028)
T ss_pred EEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCccccc--------Ccc-cc
Confidence 999999999999999999999999999854300 03333332 333 22
Q ss_pred ChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCC-CCCCCCCCCcccccCCCeeee-e
Q 009224 153 TGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGA-TAKRLNLPREDEFWSRGISAC-A 229 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~-~ 229 (540)
.+.+..+.+...++. .++.++.+...+.+. +++ +-....||+|+||||+ .|+.+++||.+. .++... .
T Consensus 458 ~~k~~l~~i~~il~~g~~v~~~~gv~lG~di-----t~e-dl~~~gyDAV~IATGA~kpr~L~IPGeda---~GV~sA~D 528 (1028)
T PRK06567 458 WDKNNLDILRLILERNNNFKYYDGVALDFNI-----TKE-QAFDLGFDHIAFCIGAGQPKVLDIENFEA---KGVKTASD 528 (1028)
T ss_pred chHHHHHHHHHHHhcCCceEEECCeEECccC-----CHH-HHhhcCCCEEEEeCCCCCCCCCCCCCccC---CCeEEHHH
Confidence 233444443333332 235555564433221 111 1124579999999999 699999999764 222111 1
Q ss_pred ecCC-----------CCCCCCCCEEEEEeCCccHHHHHHHHHh-------------------------------------
Q 009224 230 ICDG-----------ASPLFKGQVLAVVGGGDTATEEAIYLTK------------------------------------- 261 (540)
Q Consensus 230 ~~~~-----------~~~~~~~k~v~VvG~G~~a~e~a~~l~~------------------------------------- 261 (540)
+... ......+++|+|||||++|+|+|....+
T Consensus 529 fL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g 608 (1028)
T PRK06567 529 FLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFK 608 (1028)
T ss_pred HHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhc
Confidence 0000 0112246899999999999999983321
Q ss_pred --------------cCCeEEEEEeccc--cccc---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---
Q 009224 262 --------------FARHVHLLVRREQ--LRAS---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--- 319 (540)
Q Consensus 262 --------------~g~~v~li~~~~~--~~~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--- 319 (540)
.| .|++++|+.. +++. .+.++.+ .+.||.++.+..+.++..+++|+++++.+....
T Consensus 609 ~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~~~eEv~~A-~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~ 686 (1028)
T PRK06567 609 EAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKLNHEELIYA-LALGVDFKENMQPLRINVDKYGHVESVEFENRNRHC 686 (1028)
T ss_pred chhccchhhhhhccCC-ceEEEecCChhhCCCCCCCHHHHHHH-HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccc
Confidence 23 2999998754 2332 3455554 467999999999999998888899998887543
Q ss_pred ---C------C-------------ceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 320 ---T------G-------------EESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 320 ---~------g-------------~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
. + .+.+++||.||+|+|..||+.+... ++-..||+-
T Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~----------------------~~s~~~d~~ 744 (1028)
T PRK06567 687 EQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED----------------------KYSYFGDCN 744 (1028)
T ss_pred ccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc----------------------ccccccCCC
Confidence 1 1 4578999999999999999987411 122344444
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
+...+++..|+++|+.++.+|.++|...+.
T Consensus 745 ~~f~Gtvv~A~as~k~~~~~i~~~l~~~~~ 774 (1028)
T PRK06567 745 PKYSGSVVKALASSKEGYDAINKKLINNNP 774 (1028)
T ss_pred CccccHHHHHHHHHHhHHHHHHHHHhhCCC
Confidence 433348999999999999999999987654
No 78
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.2e-26 Score=238.34 Aligned_cols=336 Identities=22% Similarity=0.260 Sum_probs=236.2
Q ss_pred CCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcc------cccccCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 42 LSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAAS------SVDALSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
++.-....|+.+ |..+|.+.....|+.|..++..+.+ +..+.++...+.++|.|||+|||||+||-+|.+
T Consensus 1731 fpeftgrvcpap----cegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1731 FPEFTGRVCPAP----CEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred CccccCccCCCC----cCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence 344445556544 5778888888889999888776554 334455556678999999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeE
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK 195 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~ 195 (540)
.|+.|+++||.++ .||.+.+ |+|.......+.++-.+.+.+.|++|..++-..-+ +..++..
T Consensus 1807 ~gh~v~vyer~dr---~ggll~y--------gipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-------vs~d~l~ 1868 (2142)
T KOG0399|consen 1807 AGHTVTVYERSDR---VGGLLMY--------GIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-------VSLDELK 1868 (2142)
T ss_pred cCcEEEEEEecCC---cCceeee--------cCCccchhHHHHHHHHHHHHhhCceEEeecccccc-------ccHHHHh
Confidence 9999999999999 9999987 88887777888888899999999999988533222 3334555
Q ss_pred EEecEEEEccCCC-CCCCCCCCcccccCCCeeee---------ee----cCCCCCCCCCCEEEEEeCCccHHHHHHHHHh
Q 009224 196 VKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC---------AI----CDGASPLFKGQVLAVVGGGDTATEEAIYLTK 261 (540)
Q Consensus 196 ~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~---------~~----~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~ 261 (540)
-++|++|+|+|++ |+..++||.+. .+++++ .. .+......++|+|+|||||.+|.++...-.+
T Consensus 1869 ~~~daiv~a~gst~prdlpv~grd~---kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvr 1945 (2142)
T KOG0399|consen 1869 KENDAIVLATGSTTPRDLPVPGRDL---KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVR 1945 (2142)
T ss_pred hccCeEEEEeCCCCCcCCCCCCccc---cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchh
Confidence 6799999999985 88889999764 111111 00 0111122479999999999999999887777
Q ss_pred cCCe-EEEEEecccccc-------------------cHHHHHHHhcCCCeEEEe-CceEEEEeeCCCCceeeEEEEEc--
Q 009224 262 FARH-VHLLVRREQLRA-------------------SRAMQDRVFNNPNITVHF-NTETVDVVSNTKGQMSGILLRKV-- 318 (540)
Q Consensus 262 ~g~~-v~li~~~~~~~~-------------------~~~~~~~~l~~~gv~~~~-~~~v~~i~~~~~g~~~~v~~~~~-- 318 (540)
+|++ |.-++--+.+++ ..+...+.. |-...+ ...-+++..+++|.++++.+.+.
T Consensus 1946 hg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~---g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew 2022 (2142)
T KOG0399|consen 1946 HGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHY---GSDPRTYSVLTKRFIGDDNGNVTGLETVRVEW 2022 (2142)
T ss_pred hccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHh---CCCcceeeeeeeeeeccCCCceeeEEEEEEEE
Confidence 7764 444443333221 122222221 111111 11123455566666666554432
Q ss_pred ------------cCCceEEEEccEEEEecccccCccc-cc-cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhh
Q 009224 319 ------------DTGEESVLEAKGLFYGIGHSPNSQL-LQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQA 384 (540)
Q Consensus 319 ------------~~g~~~~i~~D~vi~a~G~~p~~~~-~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~ 384 (540)
..++++.++||+||+|.|+...... .. .+++.|+++.|.....-..+.++++||+|||..+ -..+
T Consensus 2023 ~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrg-qslv 2101 (2142)
T KOG0399|consen 2023 EKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRG-QSLV 2101 (2142)
T ss_pred EecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCC-ceEE
Confidence 1356788999999999999754433 32 3577888887777655558999999999999987 3788
Q ss_pred hhhhchHHHHHHHHHHHHhcCc
Q 009224 385 VTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 385 ~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
..|+.+||++|..+...+.+..
T Consensus 2102 vwai~egrq~a~~vd~~~~~~t 2123 (2142)
T KOG0399|consen 2102 VWAIQEGRQAARQVDELMGGTT 2123 (2142)
T ss_pred EEEehhhhHHHHHHHHHhCCcc
Confidence 9999999999999998554443
No 79
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.92 E-value=7e-24 Score=220.26 Aligned_cols=175 Identities=26% Similarity=0.420 Sum_probs=131.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-------------------cccCC------CCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-------------------VENFP------GFP 149 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-------------------~~~~~------~~~ 149 (540)
++|+|||||++||++|..|.+.|++++++|+.+. .||.|.+... ...|+ .+|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~---iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD---IGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS---SSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC---CCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6899999999999999999999999999999998 9999875321 01122 234
Q ss_pred CCCChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeC-----CcEEEEE--CC--eEEEecEEEEccCC--CCCCCC--
Q 009224 150 DGITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKS-----NPFTVKS--GE--RKVKCHSIVFATGA--TAKRLN-- 213 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~-----~~~~v~~--~~--~~~~~d~lviAtG~--~~~~~~-- 213 (540)
.+....++.+|++.+.+++++. ++.+ +|+.++..+ +.|.|.. ++ ++..||+||+|||. .|+.|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 5667789999999999999874 4444 888888754 3688876 23 34579999999995 588884
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
+||.+.|.+..+|...+.+. ..+++|+|+|||+|.+|+|+|.+|++.+.+|++..|+..
T Consensus 159 ~~G~e~F~G~i~HS~~yr~~--~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRDP--EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp -CTGGGHCSEEEEGGG--TG--GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred hhhhhcCCeeEEccccCcCh--hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 99999988877777766554 347899999999999999999999999999999888764
No 80
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-22 Score=167.35 Aligned_cols=105 Identities=27% Similarity=0.453 Sum_probs=99.8
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
.....+...|++.+.+++.||++.||++||+||+.+.|.++++..++.++++|+++|.|++.+++.+|+|.++||+++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 34455788899999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
||+++++..|..+.+.+.++|++++
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHh
Confidence 9999999999999999999999875
No 81
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=200.51 Aligned_cols=282 Identities=22% Similarity=0.235 Sum_probs=194.7
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCC-CChHHHHHHHHHHHHHhCCEEE
Q 009224 97 VVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG-ITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 97 vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
++|||+|++|+++|..|++. +.+++++.......+....+.. .+... ....++....... .+.++++.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 71 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSL--------YVGGGIASLEDLRYPPRFN-RATGIDVR 71 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccch--------HHhcccCCHHHhcccchhH-HhhCCEEe
Confidence 58999999999999999886 5678877765432111111100 00000 1111111111122 56688888
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC----CCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP----LFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~----~~~~k~v~VvG~ 248 (540)
.+ +|..++++.+.+.+. ++ .+.||++++|||++|..++ +.. ............... ....++++|+|+
T Consensus 72 ~~~~v~~id~~~~~v~~~-~g-~~~yd~LvlatGa~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~ 144 (415)
T COG0446 72 TGTEVTSIDPENKVVLLD-DG-EIEYDYLVLATGARPRPPP--ISD---WEGVVTLRLREDAEALKGGAEPPKDVVVVGA 144 (415)
T ss_pred eCCEEEEecCCCCEEEEC-CC-cccccEEEEcCCCcccCCC--ccc---cCceEEECCHHHHHHHHHHHhccCeEEEECC
Confidence 86 799999999988876 44 8999999999999998776 111 111111111111100 012589999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee-EEEEEccCC
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG-ILLRKVDTG 321 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~-v~~~~~~~g 321 (540)
|+.|+++|..+++.|.+|++++..+++.+ ....+.+.+++.||+++++..+.+++...+..... +.. .
T Consensus 145 G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~-----~ 219 (415)
T COG0446 145 GPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVG-----I 219 (415)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEE-----e
Confidence 99999999999999999999999887654 34556667889999999999999999876421111 121 3
Q ss_pred ceEEEEccEEEEecccccCccccccce--eccCCCCEEeCCCccccC-CCceEEccccCCCc---------chhhhhhhc
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQGQV--ELDSSGYVIVEEGTAKTS-VEGVFAAGDVQDHE---------WRQAVTAAG 389 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~~~--~~~~~g~i~vd~~~~~t~-~~~iya~GD~~~~~---------~~~~~~A~~ 389 (540)
.+..+++|.+++++|.+|+..+..... ....+|++.||..+ +++ .++||++|||+..+ ......+..
T Consensus 220 ~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~-~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~ 298 (415)
T COG0446 220 DGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERG-GTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVA 298 (415)
T ss_pred CCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEcccc-ccCCCCCEEeccceEeeecccCCceeeeechhhHhh
Confidence 456799999999999999988776653 56778899999999 776 99999999998642 233445666
Q ss_pred hHHHHHHHHHH
Q 009224 390 SGCIAALSVER 400 (540)
Q Consensus 390 ~g~~aa~~i~~ 400 (540)
+++.++.++..
T Consensus 299 ~~~i~~~~~~~ 309 (415)
T COG0446 299 AGRIAAENIAG 309 (415)
T ss_pred hhHHHHHHhcc
Confidence 77777777754
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.87 E-value=2.8e-21 Score=178.82 Aligned_cols=169 Identities=31% Similarity=0.452 Sum_probs=117.7
Q ss_pred EEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccCcc---------ccCCCC-----------------CC
Q 009224 98 VIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEV---------ENFPGF-----------------PD 150 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~~~---------~~~~~~-----------------~~ 150 (540)
+||||||+||++|..|.++|.+ ++|+|+.+. +||.|...... ...+++ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~---~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR---PGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSS---STTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC---CCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcc
Confidence 6999999999999999999999 999999877 77777632100 001111 11
Q ss_pred CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECC-eEEEecEEEEccCC--CCCCCCCCC-cccccCCCe
Q 009224 151 GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGA--TAKRLNLPR-EDEFWSRGI 225 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~--~~~~~~ipg-~~~~~~~~~ 225 (540)
.....++.+++..+.++++++++.+ +|+++..+++.|.|.... ..+.+|+||+|||. .|+.|.+|| ... ..+
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~---~~~ 154 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR---PII 154 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS---EEE
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc---ceE
Confidence 3455778899999999999998776 899999999999999855 48999999999995 788899998 222 333
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
+.....+. ..+.+|+|+|||+|.+|+|+|..|.+.|.+|+++.|++.
T Consensus 155 h~~~~~~~--~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 155 HSADWRDP--EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp EGGG-STT--GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ehhhcCCh--hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 33333222 236789999999999999999999999999999999874
No 83
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.86 E-value=1.1e-19 Score=182.43 Aligned_cols=289 Identities=17% Similarity=0.169 Sum_probs=186.2
Q ss_pred CcccEEEECCCHHHHHHHHHHH-HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAA-RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~-~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
..++|+||||||||++||.+|. +.|++|+|+|+.+. |+|.+.+.-. |++..-..+...+...+...+++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~---pgGLvR~GVa-------Pdh~~~k~v~~~f~~~~~~~~v~ 107 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN---PYGLIRYGVA-------PDHIHVKNTYKTFDPVFLSPNYR 107 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC---CccEEEEeCC-------CCCccHHHHHHHHHHHHhhCCeE
Confidence 4578999999999999999765 67999999999998 9999987321 23333355666666666667777
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCC----------Ccccc-cCCCee----eeeecCCCC-
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP----------REDEF-WSRGIS----ACAICDGAS- 235 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ip----------g~~~~-~~~~~~----~~~~~~~~~- 235 (540)
++.+.-...+ +++ +...-.||+||+|+|+.+..++++ |++.. ...+.+ ...+.+...
T Consensus 108 f~gnv~VG~D-----vt~--eeL~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~ 180 (506)
T PTZ00188 108 FFGNVHVGVD-----LKM--EELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYN 180 (506)
T ss_pred EEeeeEecCc-----cCH--HHHHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCC
Confidence 7743211111 111 222347999999999986543321 33200 000111 111111111
Q ss_pred -----CC------C-CCCEEEEEeCCccHHHHHHHHH--------------------hc-CCeEEEEEecccccc-----
Q 009224 236 -----PL------F-KGQVLAVVGGGDTATEEAIYLT--------------------KF-ARHVHLLVRREQLRA----- 277 (540)
Q Consensus 236 -----~~------~-~~k~v~VvG~G~~a~e~a~~l~--------------------~~-g~~v~li~~~~~~~~----- 277 (540)
.. + ..++++|||+|++|+|+|..|. +. -.+|+++.|+.....
T Consensus 181 ~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~k 260 (506)
T PTZ00188 181 DVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNA 260 (506)
T ss_pred ccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHH
Confidence 11 1 4579999999999999998753 21 237999998864321
Q ss_pred ----------------cHH--------------------------HHHHHh----------cCCCeEEEeCceEEEEeeC
Q 009224 278 ----------------SRA--------------------------MQDRVF----------NNPNITVHFNTETVDVVSN 305 (540)
Q Consensus 278 ----------------~~~--------------------------~~~~~l----------~~~gv~~~~~~~v~~i~~~ 305 (540)
..+ ++.+.. ..+.+.+++...+.+|.+.
T Consensus 261 ElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~ 340 (506)
T PTZ00188 261 ELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPI 340 (506)
T ss_pred HHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECC
Confidence 000 111111 1134778888899999873
Q ss_pred CCCceeeEEEEEcc--------CCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 306 TKGQMSGILLRKVD--------TGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 306 ~~g~~~~v~~~~~~--------~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
+++++++.+.... +++.++++||+|+-|+|++...-. ++++|.. +.....---...||+|++|-+.
T Consensus 341 -~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~---g~pFd~~--~~n~~grv~~~~~g~Y~~GWiK 414 (506)
T PTZ00188 341 -DGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA---ENLYNQS--VQMFKEDIGQHKFAIFKAGWFD 414 (506)
T ss_pred -CCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC---CCCcccc--CCCCCCcccCCCCCcEEeeecC
Confidence 3678899887532 466678999999999999875321 3455622 3222211011369999999999
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.+|.+.+...+..+..++..+.+.+..
T Consensus 415 rGP~GvIgtn~~da~~t~~~v~~d~~~ 441 (506)
T PTZ00188 415 KGPKGNIASQILNSKNSTHLVLNFLQK 441 (506)
T ss_pred cCCCceeccCcccHHHHHHHHHHHHhh
Confidence 988788888889999999999988755
No 84
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.86 E-value=1.1e-20 Score=186.32 Aligned_cols=244 Identities=21% Similarity=0.280 Sum_probs=149.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCCCcceeeccCcccc-----C-----CCCC-------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGVPGGQLMTTTEVEN-----F-----PGFP------------- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~~gg~~~~~~~~~~-----~-----~~~~------------- 149 (540)
.+|+++||.||++|+.|..|.+.+ .++..+|+.+...|..|++.....++. + |..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 589999999999999999999886 899999998887777777665433321 0 1100
Q ss_pred --------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc----EEEEE-----CCeEEEecEEEEccCCCCCC
Q 009224 150 --------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP----FTVKS-----GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 150 --------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~----~~v~~-----~~~~~~~d~lviAtG~~~~~ 211 (540)
...+..++.+|+.+..+++.-.+..+ +|+.|++..+. |.|.+ ++..+.+++||+|||..|..
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 13456778888888888887646555 89999877654 88887 45789999999999988877
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC--eEEEEEecccccc------------
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR--HVHLLVRREQLRA------------ 277 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~--~v~li~~~~~~~~------------ 277 (540)
|..-.........++...+.........+++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~ 241 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS 241 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence 64322110012234444443333334678999999999999999999998875 8999999886532
Q ss_pred ------------------------------cHHHH---------HHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 278 ------------------------------SRAMQ---------DRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 278 ------------------------------~~~~~---------~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
..+.+ +++..+..+.++.+++|.+++..+++.+. +.+.+.
T Consensus 242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~ 320 (341)
T PF13434_consen 242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHR 320 (341)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEET
T ss_pred chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEEC
Confidence 01111 11224446889999999999988755444 777777
Q ss_pred cCCceEEEEccEEEEecccc
Q 009224 319 DTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~ 338 (540)
..+...++++|.||+|||++
T Consensus 321 ~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 321 QTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp TT--EEEEEESEEEE---EE
T ss_pred CCCCeEEEecCEEEEcCCcc
Confidence 77888999999999999985
No 85
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.86 E-value=2.3e-20 Score=190.91 Aligned_cols=180 Identities=23% Similarity=0.305 Sum_probs=141.5
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeecc----------CccccCCCCCC-----CCCh
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTT----------TEVENFPGFPD-----GITG 154 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~----------~~~~~~~~~~~-----~~~~ 154 (540)
..+.+||+|||||++||++|++|.+.|.. ++|+||+.. +||.|... .....+|.+|. ....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~---~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD---VGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC---cCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 34568999999999999999999999998 999999987 67765542 22233444433 1222
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-----eEEEEEeeCCcEEEEECC-eE--EEecEEEEccCC--CCCCCCCCCcccccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-----DVEFIDVKSNPFTVKSGE-RK--VKCHSIVFATGA--TAKRLNLPREDEFWSRG 224 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-----~v~~i~~~~~~~~v~~~~-~~--~~~d~lviAtG~--~~~~~~ipg~~~~~~~~ 224 (540)
.++.+++..+++++++..... ++...+.+++.|+|..+. .. +.+|.||+|||. .|+.|.++|.+.|.+..
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~ 161 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRI 161 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceE
Confidence 347888999999998765432 334444555689887733 22 669999999994 69999999999999998
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
+|...+.+.. .+++|+|+|||+|.+|++++.+|.+.|.+|+++.|++..
T Consensus 162 ~HS~~~~~~~--~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 162 LHSADWPNPE--DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EchhcCCCcc--ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 8888777763 479999999999999999999999999999999998764
No 86
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=4.6e-20 Score=185.58 Aligned_cols=233 Identities=21% Similarity=0.295 Sum_probs=169.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc-------------------ccCCCCC----
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV-------------------ENFPGFP---- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~-------------------~~~~~~~---- 149 (540)
..++|+|||||+|||.+|+.|.+.|++++++||.+. .||.|.+.... ..++.+|
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~---iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~ 81 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD---IGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPER 81 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC---ccceEeecCcccccccchhhhhhccCChhhhcCCCCCCccc
Confidence 357999999999999999999999999999999998 99999887221 1222222
Q ss_pred --CC-CChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeC-CcEEEEE--C---CeEEEecEEEEccCCC--CCCCCCC
Q 009224 150 --DG-ITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKS-NPFTVKS--G---ERKVKCHSIVFATGAT--AKRLNLP 215 (540)
Q Consensus 150 --~~-~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~-~~~~v~~--~---~~~~~~d~lviAtG~~--~~~~~ip 215 (540)
.. .+..++.+|+..+++++++. +..+ +|..++... +.|.|.. + ....-||.|++|||.. |+.|.+|
T Consensus 82 ~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 82 DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP 161 (448)
T ss_pred CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC
Confidence 22 44568999999999999974 4444 778888887 6888876 2 1467799999999976 8889888
Q ss_pred C--cccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEE
Q 009224 216 R--EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITV 293 (540)
Q Consensus 216 g--~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~ 293 (540)
| .+.|.+..+|...+... ..+.+|+|+|||.|.+|+|++.++++.+.+|++..+.... ...... ....++-.
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~--e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~---~~~~~~-~~~~~~~~ 235 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSP--EKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKV---HVEPPE-ILGENLWQ 235 (448)
T ss_pred CCchhhcCCcceehhhccCc--ccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccc---cccccc-eeecceEE
Confidence 8 56788888888877654 3478999999999999999999999998888888651000 000000 01122222
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
+.. +..+..+. ..+.+ ......+|.+|+|||+.-...++..
T Consensus 236 ~~~--i~~~~e~~------~~~~~----~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 236 VPS--IKSFTEDG------SVFEK----GGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred ccc--cccccCcc------eEEEc----CceeEEeeeEEEeeeeEeecceecc
Confidence 222 44444442 33332 2455779999999999887777654
No 87
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.84 E-value=5.9e-21 Score=180.65 Aligned_cols=321 Identities=19% Similarity=0.197 Sum_probs=208.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCC----CcceeeccCccc-----cCCCC----------C--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGV----PGGQLMTTTEVE-----NFPGF----------P-- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~----~gg~~~~~~~~~-----~~~~~----------~-- 149 (540)
+....+|||+|.+..+++...... +.+|.+|..++..++ .+..+++..... .|-.| |
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 345689999999988887666544 678998876655432 122222211110 00000 0
Q ss_pred CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCC-CcccccCCCeee
Q 009224 150 DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP-REDEFWSRGISA 227 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ip-g~~~~~~~~~~~ 227 (540)
.+.+++++ .....-||-+..+ .|+.+|.+++.+++. ++.+|.||.++||||++|+....- -...-....+..
T Consensus 257 FfvspeDL-----p~~~nGGvAvl~G~kvvkid~~d~~V~Ln-DG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~ 330 (659)
T KOG1346|consen 257 FFVSPEDL-----PKAVNGGVAVLRGRKVVKIDEEDKKVILN-DGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITY 330 (659)
T ss_pred ceeChhHC-----cccccCceEEEeccceEEeecccCeEEec-CCcEeehhheeeecCcCcccchhhhhcCHHhhhheeE
Confidence 01122221 1233447888888 899999998888887 889999999999999999765421 111111112223
Q ss_pred eeecCCCCCC----CCCCEEEEEeCCccHHHHHHHHHhc----CCeEEEEEecccc----cc--cHHHHHHHhcCCCeEE
Q 009224 228 CAICDGASPL----FKGQVLAVVGGGDTATEEAIYLTKF----ARHVHLLVRREQL----RA--SRAMQDRVFNNPNITV 293 (540)
Q Consensus 228 ~~~~~~~~~~----~~~k~v~VvG~G~~a~e~a~~l~~~----g~~v~li~~~~~~----~~--~~~~~~~~l~~~gv~~ 293 (540)
..+..++..+ ...++|.|||+|+.|.|+|..|.+. |.+|+-+...... ++ ...+..+.+++.||.+
T Consensus 331 fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V 410 (659)
T KOG1346|consen 331 FRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDV 410 (659)
T ss_pred EecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCcee
Confidence 3333222221 2358999999999999999998764 6688877665432 22 3444445578899999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCC-CCEEeCCCccccCCCceE
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSS-GYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~-g~i~vd~~~~~t~~~~iy 371 (540)
+.+..|.++..... .+.+.. .++.++..|+|++|+|-.||++++.. ++++|+. |...+|..+ ....|||
T Consensus 411 ~pna~v~sv~~~~~----nl~lkL---~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL--~ar~Nvw 481 (659)
T KOG1346|consen 411 RPNAKVESVRKCCK----NLVLKL---SDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAEL--KARENVW 481 (659)
T ss_pred ccchhhhhhhhhcc----ceEEEe---cCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeehee--eccccee
Confidence 99999988877643 244433 34566999999999999999999874 7888875 889999988 3457999
Q ss_pred EccccCCCc--------chhhhhhhchHHHHHHHHHHHHhcCcc-eeeecC--CCccCCCCcCCCCCC
Q 009224 372 AAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVNNNL-LIEFHQ--PQAEEPKKDLTDRDV 428 (540)
Q Consensus 372 a~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~~~~-~~~~~~--~~~~~~~v~~~~~~~ 428 (540)
++||++... ......|+..||.|+.||......... .+.|.+ |++.-...|+-+..+
T Consensus 482 vAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGlvDSSL 549 (659)
T KOG1346|consen 482 VAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGLVDSSL 549 (659)
T ss_pred eecchhhhhcccccceeccccccceeeceecccccccccCCccccceeeeccCcccccceeeecccCC
Confidence 999998631 234457788999999999765543222 244444 444444445444433
No 88
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.84 E-value=6.7e-19 Score=170.37 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=190.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHH-HHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRM-RRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 172 (540)
.++++|||||+||++||+.|++.|++|.|+||++. .||++..-.. -||..-...-++..+ .+.....++++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps---iGGrmak~~k-----~FP~~dcs~C~LaP~m~~v~~hp~i~l 195 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS---IGGRMAKLNK-----TFPTNDCSICILAPKMVEVSNHPNIEL 195 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc---ccccHHhhhc-----cCCCcccchhhccchhhhhccCCceee
Confidence 47899999999999999999999999999999998 8888654322 112111111111111 22222234444
Q ss_pred EEe-eEEEEEeeCCcEEEE-------------------------------------------------------------
Q 009224 173 HQE-DVEFIDVKSNPFTVK------------------------------------------------------------- 190 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~------------------------------------------------------------- 190 (540)
++. +|..++..-+.|+|+
T Consensus 196 ~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~ 275 (622)
T COG1148 196 ITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIE 275 (622)
T ss_pred eeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhcc
Confidence 433 444433222222221
Q ss_pred --------------E--CC--eEEEecEEEEccCCCCCCCCCCCccccc-----CCCeeeeeecC----------CCCCC
Q 009224 191 --------------S--GE--RKVKCHSIVFATGATAKRLNLPREDEFW-----SRGISACAICD----------GASPL 237 (540)
Q Consensus 191 --------------~--~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~-----~~~~~~~~~~~----------~~~~~ 237 (540)
. ++ .+++.-.+|+|||-.+....-..+-.+. ..++....... ....-
T Consensus 276 c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg 355 (622)
T COG1148 276 CGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDG 355 (622)
T ss_pred chhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCC
Confidence 0 11 2577889999999765443211110000 00000000000 00112
Q ss_pred CCCCEEEEE---eCCc--------------cHHHHHHHHHhc--CCeEEEEEecccccc--cHHHHHHHhcCCCeEEEeC
Q 009224 238 FKGQVLAVV---GGGD--------------TATEEAIYLTKF--ARHVHLLVRREQLRA--SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 238 ~~~k~v~Vv---G~G~--------------~a~e~a~~l~~~--g~~v~li~~~~~~~~--~~~~~~~~l~~~gv~~~~~ 296 (540)
..+|+|+.| |+-. .++--|..+.++ ..+|++++..-+-.. ..++..+.-++.||+++.+
T Consensus 356 ~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRG 435 (622)
T COG1148 356 KPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRG 435 (622)
T ss_pred CCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhhhhhchhhhcC
Confidence 467888876 6544 122223333333 347888877544332 4555655555889999977
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc----cceeccCCCCEEeC-CCc--cccCCCc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ----GQVELDSSGYVIVE-EGT--AKTSVEG 369 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~----~~~~~~~~g~i~vd-~~~--~~t~~~~ 369 (540)
++.+|...+++. ..|+.+++-.|...++++|+|++++|+.|....-+ .+++.+++||+... +.+ ..++.+|
T Consensus 436 -rvaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~G 513 (622)
T COG1148 436 -RVAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDG 513 (622)
T ss_pred -ChHHheeCCCCe-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCc
Confidence 677887777665 34778888888889999999999999998654322 36888999998876 333 1367899
Q ss_pred eEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcceee
Q 009224 370 VFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIE 410 (540)
Q Consensus 370 iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~ 410 (540)
||.+|-+.++ +.+..++.||..||..+.+.+.......+
T Consensus 514 IflAG~aqgP--kdI~~siaqa~aAA~kA~~~l~~g~~~~~ 552 (622)
T COG1148 514 IFLAGAAQGP--KDIADSIAQAKAAAAKAAQLLGRGEVELE 552 (622)
T ss_pred EEEeecccCC--ccHHHHHHHhHHHHHHHHHHhhcCceeec
Confidence 9999988885 89999999999999999999887766433
No 89
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.83 E-value=1.6e-19 Score=145.52 Aligned_cols=96 Identities=19% Similarity=0.375 Sum_probs=83.8
Q ss_pred HHHHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 443 YALRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 443 ~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++|++.+. +.++++++.||++||++|+.+.|.++++++++.+.+.|++||++++++++++|+|.++||+++|++|+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 45666665 46789999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred EeeCCC----------CHHHHHHHHHh
Q 009224 522 TVPGVK----------MKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~----------~~~~~~~~i~~ 538 (540)
+..|.. +++.|.+.++.
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 83 IDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 988753 45666665543
No 90
>PHA02278 thioredoxin-like protein
Probab=99.83 E-value=1.2e-19 Score=145.68 Aligned_cols=95 Identities=16% Similarity=0.328 Sum_probs=84.5
Q ss_pred CcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----HHHHHHcCCCcccEEEEEe
Q 009224 440 KGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----PEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~~Pt~~~~~ 515 (540)
++..+|.+.+ +.+++++++||++||++|+.+.|.++++++++..++.|+++|++++ ++++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 2 NSLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred CCHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 3456677777 5778999999999999999999999999988765678999999986 6899999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHH
Q 009224 516 NKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~ 535 (540)
+|+.+.++.|..+.++|.++
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 99999999999998888765
No 91
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.80 E-value=5.9e-19 Score=144.92 Aligned_cols=99 Identities=14% Similarity=0.235 Sum_probs=93.2
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChh--hh--hhhHHHHHHHHHh--CCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGP--CR--TLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~--C~--~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
++.+|.+.+.+++.+++++||+.||++ |+ .+.|.+.+++.++ .+++.|++||++++++++++|+|+++||+++|
T Consensus 15 t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lf 94 (120)
T cd03065 15 NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVF 94 (120)
T ss_pred ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEE
Confidence 468899999999999999999999988 99 8999999999998 77899999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+||+++. +.|..+.+.|.+||++++
T Consensus 95 k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 95 KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999887 999999999999999864
No 92
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.80 E-value=4.6e-19 Score=144.80 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=87.2
Q ss_pred cHHHHHHH--HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHH-HHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKL--YHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIA-EAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~--~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~i~~~Pt~~~~~~g 517 (540)
++.+|.+. +.+.++++++.||++||++|+.+.|.|+++++++.+.+.|++||++++.+++ ++|+|.++||+++|++|
T Consensus 15 ~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g 94 (113)
T cd03006 15 YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRS 94 (113)
T ss_pred chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECC
Confidence 35667775 3678899999999999999999999999999999878999999999999999 58999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i 536 (540)
+...++.|..+.+.|..|+
T Consensus 95 ~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 95 RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccceEEeCCCCHHHHHhhC
Confidence 9889999999999998874
No 93
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.80 E-value=3.5e-18 Score=160.83 Aligned_cols=288 Identities=22% Similarity=0.302 Sum_probs=184.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++|.|||+||||+.+|..|.++ +++|+|+|+.+. |.|..++.- .|++.....+.+.....+++....
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv---PFGLvRyGV-------APDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV---PFGLVRYGV-------APDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc---ccceeeecc-------CCCCcchhhHHHHHHHHhhccceE
Confidence 35899999999999999999885 689999999998 999988732 244444556666666767776666
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCC-CCCCCCCCcccc----------cCCCeeeeeecCCCCCCCCC
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT-AKRLNLPREDEF----------WSRGISACAICDGASPLFKG 240 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~-~~~~~ipg~~~~----------~~~~~~~~~~~~~~~~~~~~ 240 (540)
+..+--.+-| +++ .+.+-.||+||||.|+. ++..+|||++.- |..+..... .....+..
T Consensus 90 f~gNv~vG~d-----vsl--~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~---~le~dls~ 159 (468)
T KOG1800|consen 90 FFGNVKVGRD-----VSL--KELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQ---NLEPDLSG 159 (468)
T ss_pred EEecceeccc-----ccH--HHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccc---ccCccccc
Confidence 6655211111 111 23445799999999985 788999998631 222222211 12233458
Q ss_pred CEEEEEeCCccHHHHHHHHHhc----------------------CCeEEEEEecccccc--c------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKF----------------------ARHVHLLVRREQLRA--S------------------ 278 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~----------------------g~~v~li~~~~~~~~--~------------------ 278 (540)
.+|+|||.|++++++|..|... -++|+++.|+..+.. .
T Consensus 160 ~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~ 239 (468)
T KOG1800|consen 160 RKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLD 239 (468)
T ss_pred ceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccC
Confidence 9999999999999999877422 236899998865321 0
Q ss_pred --------------------HHHHHHHh---cC---------CC---eEEEeCceEEEEeeCCCCceeeEEEEE------
Q 009224 279 --------------------RAMQDRVF---NN---------PN---ITVHFNTETVDVVSNTKGQMSGILLRK------ 317 (540)
Q Consensus 279 --------------------~~~~~~~l---~~---------~g---v~~~~~~~v~~i~~~~~g~~~~v~~~~------ 317 (540)
.++.+.++ ++ .+ ..+.+...+.+|.++.++ +.++.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~ 318 (468)
T KOG1800|consen 240 PVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTILEGT 318 (468)
T ss_pred chhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeeeehhh
Confidence 01111110 11 11 122223344555555333 33343322
Q ss_pred --ccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccc---cCCCceEEccccCCCcchhhhhhhchHH
Q 009224 318 --VDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAK---TSVEGVFAAGDVQDHEWRQAVTAAGSGC 392 (540)
Q Consensus 318 --~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~---t~~~~iya~GD~~~~~~~~~~~A~~~g~ 392 (540)
...|..++++|++++.++|++...- ..++.+|..-.+.-+.+.+. --.|++|+.|-+..+|.+.+..++.++.
T Consensus 319 ~~~~tg~~e~~p~~l~i~sIGYks~pv--~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf 396 (468)
T KOG1800|consen 319 QAVPTGAFETLPCGLLIRSIGYKSVPV--DSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAF 396 (468)
T ss_pred cccccCceEeeccceeEeeeeeccccc--CCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcceeeehhhhHH
Confidence 2356778999999999999875432 12344443322222222211 1249999999999988888899999999
Q ss_pred HHHHHHHHHHhc
Q 009224 393 IAALSVERYLVN 404 (540)
Q Consensus 393 ~aa~~i~~~l~~ 404 (540)
..|..|.+.+..
T Consensus 397 ~v~d~I~qD~~~ 408 (468)
T KOG1800|consen 397 EVADTIVQDLKI 408 (468)
T ss_pred HHHHHHHHHHHH
Confidence 999999998873
No 94
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.80 E-value=1.2e-18 Score=142.30 Aligned_cols=99 Identities=31% Similarity=0.650 Sum_probs=93.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
++.+|.+.+.+.+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|.++||+++|++|+..
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 35668888888889999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
.++.|..+.++|.+||+++
T Consensus 85 ~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 85 KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcC
Confidence 9999999999999999985
No 95
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=3.8e-17 Score=156.29 Aligned_cols=280 Identities=18% Similarity=0.233 Sum_probs=195.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCCCcceeeccCccccC----------CCC------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGVPGGQLMTTTEVENF----------PGF------------ 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~~gg~~~~~~~~~~~----------~~~------------ 148 (540)
....|++.||-||+-|+.|..|...+ +++..+||.+...|-.|++...+.++.- |..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 35689999999999999999999885 7899999998888777777765443210 000
Q ss_pred ---------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEE---EeeCC--cEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 149 ---------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFI---DVKSN--PFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i---~~~~~--~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
...+...++.+|..+....+ -.++.+ +|+.| +.+.. .+.+..++..++++.||+++|.+|..|+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence 01345567777777777666 344444 67744 33322 2244446668999999999999999884
Q ss_pred ----CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc----CCeEEEEEecccccc--------
Q 009224 214 ----LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF----ARHVHLLVRREQLRA-------- 277 (540)
Q Consensus 214 ----ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~----g~~v~li~~~~~~~~-------- 277 (540)
+++. ..++...+......+...++|+|||+|.+|.|+-..|... ..++.|+.|+..+.+
T Consensus 162 ~f~~l~~~-----~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~ 236 (436)
T COG3486 162 CFRSLIGE-----RVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL 236 (436)
T ss_pred HHhCcCcc-----ceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence 2332 2244444444444444455699999999999998887643 346899999886543
Q ss_pred ---------------------------------cHHHHH--------HHh--cCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 278 ---------------------------------SRAMQD--------RVF--NNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 278 ---------------------------------~~~~~~--------~~l--~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
..+.+. +.+ .+..+.++..+.+..++..++|+ ..+.
T Consensus 237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~ 315 (436)
T COG3486 237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLT 315 (436)
T ss_pred hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEE
Confidence 001111 111 35678999999999999998876 4477
Q ss_pred EEEccCCceEEEEccEEEEecccccCcc-ccc---cceeccCCCCEEeCCCccccCC----CceEEccccCC
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQ-LLQ---GQVELDSSGYVIVEEGTAKTSV----EGVFAAGDVQD 378 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~~~---~~~~~~~~g~i~vd~~~~~t~~----~~iya~GD~~~ 378 (540)
+....+++.++++.|.||+|||++.... ++. +.+.+|++|...|+.+.+.... ..||+.|-+..
T Consensus 316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 7777778889999999999999985443 543 3577899999999988733332 36999997765
No 96
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.79 E-value=7e-20 Score=169.14 Aligned_cols=182 Identities=31% Similarity=0.465 Sum_probs=121.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHH--H--HHHHHHHHhCCE
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLM--D--RMRRQAERWGAE 171 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~v~ 171 (540)
||+|||||+||++||.+|++.+++++|+|+.+..++....+......... ....... + .+.+.+...+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~ 74 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIA------PHRHEFLPARLFKLVDQLKNRGVE 74 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHH------HHHHHHHHHHHGHHHHHHHHHTHE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccccccccc------ccccccccccccccccccccceEE
Confidence 69999999999999999999999999998755311111111000000000 0000111 1 444455778999
Q ss_pred EEE-eeEEEEEeeCCcE-----EEE----ECCeEEEecEEEEccCCCCCCCCCCCccc-ccCCCeeeeeecCCCCCCCCC
Q 009224 172 LHQ-EDVEFIDVKSNPF-----TVK----SGERKVKCHSIVFATGATAKRLNLPREDE-FWSRGISACAICDGASPLFKG 240 (540)
Q Consensus 172 ~~~-~~v~~i~~~~~~~-----~v~----~~~~~~~~d~lviAtG~~~~~~~ipg~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (540)
++. .++..++...+.+ .+. .++.++.||+||+|||+.|+.|.+||.+. .....+..+....... ..+
T Consensus 75 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~--~~~ 152 (201)
T PF07992_consen 75 IRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELL--ESP 152 (201)
T ss_dssp EEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHS--STT
T ss_pred EeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccc--ccc
Confidence 955 5999999888742 221 14568999999999999999999999732 2234444443333322 234
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~ 320 (540)
++++|||
T Consensus 153 ~~v~VvG------------------------------------------------------------------------- 159 (201)
T PF07992_consen 153 KRVAVVG------------------------------------------------------------------------- 159 (201)
T ss_dssp SEEEEES-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 5999999
Q ss_pred CceEEEEccEEEEecccccCcccc--ccceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 321 GEESVLEAKGLFYGIGHSPNSQLL--QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~~~~--~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
+..+ ..+++++++|++.||+++ +|+.|||||+|||++.
T Consensus 160 --------------------~~~l~~~~~~~~~~~g~i~vd~~~-~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 160 --------------------TEFLAEKLGVELDENGFIKVDENL-QTSVPGIYAAGDCAGI 199 (201)
T ss_dssp --------------------TTTSTHHTTSTBTTTSSBEEBTTS-BBSSTTEEE-GGGBEE
T ss_pred --------------------cccccccccccccccccccccccc-cccccccccccccccc
Confidence 2233 236778899999999999 8999999999999974
No 97
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.79 E-value=1.3e-18 Score=139.83 Aligned_cols=94 Identities=19% Similarity=0.476 Sum_probs=86.8
Q ss_pred HHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 444 ALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 444 ~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
+|.+.+.++ +++++++||++||++|+.+.|.++++++.+.+.+.|+.+|++++++++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 356666555 7899999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHH
Q 009224 523 VPGVKMKKEYREFIE 537 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~ 537 (540)
+.|..+.++|.++|+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999999874
No 98
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.5e-18 Score=137.92 Aligned_cols=91 Identities=24% Similarity=0.530 Sum_probs=82.6
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCC
Q 009224 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 447 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 526 (540)
......+++++++||++||+||+.+.|.+.+|+.+|++ +.|+++|+|++.+++++++|..+|||+||++|+.+.+..|.
T Consensus 15 ~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 15 SAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred HHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 33344579999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHhh
Q 009224 527 KMKKEYREFIEAN 539 (540)
Q Consensus 527 ~~~~~~~~~i~~~ 539 (540)
... ++++.++++
T Consensus 94 ~~~-~l~~~i~~~ 105 (106)
T KOG0907|consen 94 NKA-ELEKKIAKH 105 (106)
T ss_pred CHH-HHHHHHHhc
Confidence 554 788888765
No 99
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.78 E-value=1.5e-18 Score=141.84 Aligned_cols=96 Identities=21% Similarity=0.362 Sum_probs=89.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-eE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK-EM 519 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~ 519 (540)
+..+|++.+.+.+++++|.||++||++|+.+.|.|+++++++.+.+.|+.+|++++++++++|+|+++||+++|++| +.
T Consensus 7 ~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 7 TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCC
Confidence 36678888888888999999999999999999999999999987899999999999999999999999999999888 88
Q ss_pred EEEeeCCCC-HHHHHHHH
Q 009224 520 IRTVPGVKM-KKEYREFI 536 (540)
Q Consensus 520 ~~~~~g~~~-~~~~~~~i 536 (540)
+.++.|..+ .++|.+||
T Consensus 87 ~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 87 YHSYNGWHRDADSILEFI 104 (104)
T ss_pred ceEccCCCCCHHHHHhhC
Confidence 999999987 88888875
No 100
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.77 E-value=6.9e-18 Score=136.85 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=88.1
Q ss_pred ecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
+.++.++|...+ +.+++++++||++||++|+.+.|.++++++++.+ .+.|+.+|++ +++++++|+|+++||+++|++
T Consensus 3 ~i~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 3 EINNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred EccCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEEC
Confidence 345677888865 5688999999999999999999999999999974 4899999999 889999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+.+.+..|. +.+.+.++|+++
T Consensus 81 g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 81 GELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred CEEEEEEecC-ChHHHHHHHhhC
Confidence 9999999996 778899998863
No 101
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.77 E-value=7e-18 Score=137.00 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=83.5
Q ss_pred HHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH---HHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP---EIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g 517 (540)
.++|.+.+.+. +++++++||++||++|+.+.|.++++++++ .++.|+.+|+++++ +++++|+|+++||++||++|
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 45677777654 889999999999999999999999999999 57999999999885 89999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHh
Q 009224 518 EMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+++.++.|..+ +++.+.+.+
T Consensus 82 ~~v~~~~G~~~-~~l~~~~~~ 101 (103)
T cd02985 82 EKIHEEEGIGP-DELIGDVLY 101 (103)
T ss_pred eEEEEEeCCCH-HHHHHHHHh
Confidence 99999999754 557776654
No 102
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.77 E-value=3.5e-18 Score=140.70 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=89.3
Q ss_pred cHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
+..+|.+.+. +.+++++|+||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 3556666554 3678999999999999999999999999999974 599999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.+.+..|..+.++|.+||+++
T Consensus 90 ~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEEEEecCCCCHHHHHHHHhcC
Confidence 9999999999999999999874
No 103
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.77 E-value=2.5e-18 Score=139.55 Aligned_cols=93 Identities=18% Similarity=0.326 Sum_probs=85.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|++.+ +..+++++.||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++++|+++||+++|++|+.+.
T Consensus 8 ~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (101)
T cd03003 8 RGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPE 86 (101)
T ss_pred HhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcc
Confidence 55677766 45589999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHH
Q 009224 522 TVPGVKMKKEYREF 535 (540)
Q Consensus 522 ~~~g~~~~~~~~~~ 535 (540)
++.|..+.+.|.+|
T Consensus 87 ~~~G~~~~~~l~~f 100 (101)
T cd03003 87 KYYGDRSKESLVKF 100 (101)
T ss_pred cCCCCCCHHHHHhh
Confidence 99999999988876
No 104
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.77 E-value=3e-18 Score=157.34 Aligned_cols=305 Identities=16% Similarity=0.203 Sum_probs=193.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-C-CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARA-N-LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~-g-~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.+.++|+|||||.+|+++|..+.++ | -+|.|+|..+..-+..|-.+... |. ..-+-...-...+-..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGg------Gl----~~l~~srr~~a~liP~~ 106 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGG------GL----KSLDSSRRKQASLIPKG 106 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEecc------ch----hhhhhccCcccccccCC
Confidence 4568999999999999999999876 4 47999996554221111111000 00 00000000001111223
Q ss_pred CEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc-cCCCeee---eee-------c---CCCC
Q 009224 170 AELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF-WSRGISA---CAI-------C---DGAS 235 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~-~~~~~~~---~~~-------~---~~~~ 235 (540)
..++..+|...+++.+.+..+ ++++|.||++|||+|..-+.-.|+|..+. ..+++-. ..+ . ....
T Consensus 107 a~wi~ekv~~f~P~~N~v~t~-gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GN 185 (446)
T KOG3851|consen 107 ATWIKEKVKEFNPDKNTVVTR-GGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGN 185 (446)
T ss_pred cHHHHHHHHhcCCCcCeEEcc-CCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCc
Confidence 344445666677777777666 88999999999999998766667775431 1111100 000 0 0000
Q ss_pred CC--CCCCEEEEEeCCccHHHHHHH-HHhcCC--eEEEEEec--ccccc---cHHHHHHHhcCCCeEEEeCceEEEEeeC
Q 009224 236 PL--FKGQVLAVVGGGDTATEEAIY-LTKFAR--HVHLLVRR--EQLRA---SRAMQDRVFNNPNITVHFNTETVDVVSN 305 (540)
Q Consensus 236 ~~--~~~k~v~VvG~G~~a~e~a~~-l~~~g~--~v~li~~~--~~~~~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 305 (540)
.+ ++...+=..|+-.-.+-++.. ++++|. ++.++... +.+.. ..+.+++..++++|++.......++..+
T Consensus 186 AIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~ 265 (446)
T KOG3851|consen 186 AIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTN 265 (446)
T ss_pred eEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEecc
Confidence 11 123333444555556666654 566664 34555443 34433 3344455667889999999999999887
Q ss_pred CCCceeeEEEEEccC-CceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCc-cccCCCceEEccccCCCcc-h
Q 009224 306 TKGQMSGILLRKVDT-GEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGT-AKTSVEGVFAAGDVQDHEW-R 382 (540)
Q Consensus 306 ~~g~~~~v~~~~~~~-g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~-~~t~~~~iya~GD~~~~~~-~ 382 (540)
++ ...+++.+. |..++++++++-+...+.+...+..+. -.|..||+.||... |.+..||||++|||.+.|. +
T Consensus 266 ~~----~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~-~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK 340 (446)
T KOG3851|consen 266 DR----KAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSD-LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK 340 (446)
T ss_pred ch----hhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCc-ccCcccceecChhhhccccCCCceeeccccCCCchh
Confidence 65 244454443 777889999999988888766555544 46888999999865 4468999999999999753 5
Q ss_pred hhhhhhchHHHHHHHHHHHHhcCcceeeec
Q 009224 383 QAVTAAGSGCIAALSVERYLVNNNLLIEFH 412 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~ 412 (540)
++....+|....-.++.+.++++.+...|.
T Consensus 341 TaAAvaaq~~vv~~nl~~~m~g~~pt~~yd 370 (446)
T KOG3851|consen 341 TAAAVAAQSPVVDKNLTQVMQGKRPTMKYD 370 (446)
T ss_pred hHHHHHhcCchhhhhHHHHhcCCCcceeec
Confidence 556667788899999999999999877764
No 105
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.77 E-value=4.9e-18 Score=142.51 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=89.3
Q ss_pred cCcHHHHHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEE-EEeC
Q 009224 439 HKGQYALRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQ-FFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~-~~~~ 516 (540)
..+..++++.+. ..++++++.||++||++|+.+.|.++++++++.+.+.|++||+|++++++++|+|++.|+++ ||++
T Consensus 8 l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 8 LHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred hCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 356777888776 55889999999999999999999999999999877999999999999999999999777666 8899
Q ss_pred Ce-EEEEeeC--------CCCHHHHHHHHHhh
Q 009224 517 KE-MIRTVPG--------VKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~-~~~~~~g--------~~~~~~~~~~i~~~ 539 (540)
|+ .+.+..| ..+.++|.+.++.+
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 98 8899999 67888999888765
No 106
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=6.7e-18 Score=139.18 Aligned_cols=99 Identities=29% Similarity=0.550 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++.+++++++|+++++||+++|++|+++.
T Consensus 10 ~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 10 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEE
Confidence 45677777777889999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++.|
T Consensus 90 ~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 90 TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EecCCCCHHHHHHHHHHhc
Confidence 9999999999999998865
No 107
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-18 Score=158.37 Aligned_cols=100 Identities=22% Similarity=0.482 Sum_probs=92.2
Q ss_pred cHHHHHHHH-HhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLY-HES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~-~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
++.+|.+.+ .++ .+||+++||+|||++|+++.|.+++++.++.+++++++||||+++.++.+|+|+++||+++|++|+
T Consensus 29 T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGq 108 (304)
T COG3118 29 TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQ 108 (304)
T ss_pred hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCc
Confidence 466666665 344 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+.-+.|..+++.+++|+++++
T Consensus 109 pVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 109 PVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred CccccCCCCcHHHHHHHHHHhc
Confidence 9999999999999999999874
No 108
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.75 E-value=9.8e-18 Score=134.14 Aligned_cols=92 Identities=14% Similarity=0.301 Sum_probs=84.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+.++|++.. ..+.++++.||++| ||+|+.+.|.++++++++++.+.|+++|++++++++.+|+|+++||+++|++|+
T Consensus 16 ~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 16 DAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred ccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 355667555 67788999999997 999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHH
Q 009224 519 MIRTVPGVKMKKEYR 533 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~ 533 (540)
.+.+..|..+.+++.
T Consensus 95 ~v~~~~G~~~~~e~~ 109 (111)
T cd02965 95 YVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEEeCccCHHHHh
Confidence 999999999998875
No 109
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=2.4e-17 Score=141.27 Aligned_cols=99 Identities=25% Similarity=0.502 Sum_probs=91.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+ +.+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|+++||+++|++|+++
T Consensus 41 ~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 41 TGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred CHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 456677755 5588999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.+||++++
T Consensus 120 ~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 120 DMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999999875
No 110
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.74 E-value=1.2e-17 Score=134.46 Aligned_cols=85 Identities=15% Similarity=0.340 Sum_probs=79.4
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCC
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKM 528 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 528 (540)
...++++++.||++||++|+.+.|.++++++++. ++.|+.+|.+ ++++++++|+|+++||+++|++| .+.++.|..+
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 4678999999999999999999999999999997 5889999999 89999999999999999999999 8889999999
Q ss_pred HHHHHHHH
Q 009224 529 KKEYREFI 536 (540)
Q Consensus 529 ~~~~~~~i 536 (540)
.++|.+|+
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 99999885
No 111
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.74 E-value=3.7e-17 Score=131.43 Aligned_cols=95 Identities=83% Similarity=1.328 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
+.+++.+.+.+++++++||++||+.|+.+.|.++++++++.+++.++.+|++++++++++++|.++|++++|++|+++.+
T Consensus 3 ~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 3 YALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred hhHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEE
Confidence 45678888899999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHH
Q 009224 523 VPGVKMKKEYREFIE 537 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~ 537 (540)
+.|..+.++|.++|+
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 999999999999874
No 112
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.73 E-value=6.2e-17 Score=131.53 Aligned_cols=99 Identities=28% Similarity=0.582 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
.++|.+.+.+.+++++++||++||++|+.+.+.++++++++++++.|+.+|++++++++++|+|.++|++++|++|+.+.
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEee
Confidence 45678888777889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|++.+
T Consensus 83 ~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 83 RSVGALPKAALKQLINKNL 101 (101)
T ss_pred eecCCCCHHHHHHHHHhhC
Confidence 9999999999999999865
No 113
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.73 E-value=3.6e-17 Score=134.47 Aligned_cols=94 Identities=21% Similarity=0.393 Sum_probs=83.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC------CCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD------ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
.++|.+.+ +.+++++|+||++||++|+++.|.++++++.+. +++.|+.+|++++++++++|+|+++||+++|+
T Consensus 8 ~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~ 86 (108)
T cd02996 8 SGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFR 86 (108)
T ss_pred HhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEe
Confidence 56788765 667899999999999999999999999988752 25899999999999999999999999999999
Q ss_pred CCeE-EEEeeCCCCHHHHHHHH
Q 009224 516 NKEM-IRTVPGVKMKKEYREFI 536 (540)
Q Consensus 516 ~g~~-~~~~~g~~~~~~~~~~i 536 (540)
+|++ ...+.|.++.++|.+||
T Consensus 87 ~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 87 NGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCcceecCCCCCHHHHHhhC
Confidence 9984 47889999999999885
No 114
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.72 E-value=1.3e-16 Score=127.24 Aligned_cols=95 Identities=17% Similarity=0.309 Sum_probs=80.1
Q ss_pred HHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 444 ALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 444 ~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
++++.+.+ .++++++.|+++||++|+.+.|.++++++++.+.+.|++||+++.++++++|+|.+.||++||++|+.+..
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~ 83 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKV 83 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEE
Confidence 45555554 48999999999999999999999999999997559999999999999999999999999999999976643
Q ss_pred --eeCC--------CCHHHHHHHHHh
Q 009224 523 --VPGV--------KMKKEYREFIEA 538 (540)
Q Consensus 523 --~~g~--------~~~~~~~~~i~~ 538 (540)
-+|. .+++++.+.++.
T Consensus 84 d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 84 DYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred ecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 2232 356888888764
No 115
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.71 E-value=1.9e-16 Score=130.43 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=78.6
Q ss_pred ecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 438 KHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
...+.++|.+.+.+ .++++++||++||++|+.+.|.+++++++++ +++|++||++++++++++|+|.++||+++|++|
T Consensus 8 ~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G 85 (113)
T cd02989 8 EVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNG 85 (113)
T ss_pred EeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEEECC
Confidence 34556778887755 4689999999999999999999999999987 599999999999999999999999999999999
Q ss_pred eEEEEeeCCC
Q 009224 518 EMIRTVPGVK 527 (540)
Q Consensus 518 ~~~~~~~g~~ 527 (540)
+++.++.|..
T Consensus 86 ~~v~~~~g~~ 95 (113)
T cd02989 86 KTVDRIVGFE 95 (113)
T ss_pred EEEEEEECcc
Confidence 9999887663
No 116
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.71 E-value=1.1e-16 Score=130.06 Aligned_cols=93 Identities=18% Similarity=0.355 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.++|.+++. + .++++||++||++|+.+.|.|+++++.+.. ++.|+.+|++++++++++|+|+++||++++++|+ +
T Consensus 8 ~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~ 83 (101)
T cd02994 8 DSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-F 83 (101)
T ss_pred hhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-E
Confidence 556777652 2 278999999999999999999999998764 6999999999999999999999999999999997 4
Q ss_pred EEeeCCCCHHHHHHHHHh
Q 009224 521 RTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~ 538 (540)
.++.|..+.++|.+|+++
T Consensus 84 ~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 84 RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEecCCCCHHHHHHHHhC
Confidence 789999999999999874
No 117
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.71 E-value=8e-17 Score=132.86 Aligned_cols=96 Identities=24% Similarity=0.476 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEEeCCe-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFFKNKE- 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~- 518 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+.+.|+.+|+++ +++++++|+|.++||+++|++|+
T Consensus 7 ~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCc
Confidence 567888888889999999999999999999999999999998789999999998 88999999999999999998886
Q ss_pred ----EEEEeeCCCCHHHHHHHHH
Q 009224 519 ----MIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 519 ----~~~~~~g~~~~~~~~~~i~ 537 (540)
....+.|..+.++|.+||.
T Consensus 87 ~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 87 ASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred ccccccccccCccCHHHHHHHhC
Confidence 4567889999999999873
No 118
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.71 E-value=1.1e-16 Score=130.34 Aligned_cols=93 Identities=22% Similarity=0.465 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
.++|.+.+.+. +++++||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 7 ~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 7 EDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 45677777543 599999999999999999999999999965 7999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHH
Q 009224 519 MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i 536 (540)
++.++.|..+.++|.+||
T Consensus 85 ~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 85 KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeeEeeCCCCHHHHHhhC
Confidence 989999999999888875
No 119
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.70 E-value=1.2e-16 Score=143.00 Aligned_cols=252 Identities=18% Similarity=0.239 Sum_probs=146.7
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC---
Q 009224 96 NVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA--- 170 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 170 (540)
+.+|||||.||.++|..|+.+ ..+|+|+...+. ... . .-.....++++++.|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~---vks-------v-------------tn~~~i~~ylekfdv~eq 57 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF---VKS-------V-------------TNYQKIGQYLEKFDVKEQ 57 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH---HHH-------H-------------hhHHHHHHHHHhcCcccc
Confidence 368999999999999999987 568888875432 000 0 001112222222222
Q ss_pred -------EEE--EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC-CCCCCCC
Q 009224 171 -------ELH--QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG-ASPLFKG 240 (540)
Q Consensus 171 -------~~~--~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~-~~~~~~~ 240 (540)
++. .+.|..++...+.+..+ ++.++.|++|+++||.+|... ..|.+. ..-.+.+...... ...+.+.
T Consensus 58 ~~~elg~~f~~~~~~v~~~~s~ehci~t~-~g~~~ky~kKOG~tg~kPklq-~E~~n~-~Iv~irDtDsaQllq~kl~ka 134 (334)
T KOG2755|consen 58 NCHELGPDFRRFLNDVVTWDSSEHCIHTQ-NGEKLKYFKLCLCTGYKPKLQ-VEGINP-KIVGIRDTDSAQLLQCKLVKA 134 (334)
T ss_pred chhhhcccHHHHHHhhhhhccccceEEec-CCceeeEEEEEEecCCCccee-ecCCCc-eEEEEecCcHHHHHHHHHhhc
Confidence 221 12356666666666666 788999999999999998653 233111 1111111110000 0123478
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhc---------------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFN--------------------------- 287 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~--------------------------- 287 (540)
|.|.|+|.|-+++|++.++. +.+|+|....+.+.. ..+++...++
T Consensus 135 K~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~v 212 (334)
T KOG2755|consen 135 KIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNV 212 (334)
T ss_pred ceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCc
Confidence 99999999999999999887 456777666554322 1111111110
Q ss_pred --CCCeEEEeCc------------------eEEEE-eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-
Q 009224 288 --NPNITVHFNT------------------ETVDV-VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ- 345 (540)
Q Consensus 288 --~~gv~~~~~~------------------~v~~i-~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~- 345 (540)
..|-.++..- ++..+ .+.+.+ .+...+...+.-..+.||.+++|+|..||.++.-
T Consensus 213 g~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~---sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~ 289 (334)
T KOG2755|consen 213 GPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNL---SVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMN 289 (334)
T ss_pred ccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhc---ccccccccccccceeeeeEEEeccccCcCceEEec
Confidence 0000000000 00000 011111 1111111123334577999999999999998654
Q ss_pred cceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 346 GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 346 ~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
..+.+.++|.+.||+.+ +|+.|++||+||....
T Consensus 290 ~~lq~~edggikvdd~m-~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 290 KMLQITEDGGIKVDDAM-ETSLPDVFAAGDVCTT 322 (334)
T ss_pred ChhhhccccCeeehhhc-cccccceeeecceecc
Confidence 35778889999999999 9999999999999874
No 120
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.70 E-value=1.8e-16 Score=145.04 Aligned_cols=99 Identities=19% Similarity=0.371 Sum_probs=90.6
Q ss_pred cHHHHHHHHHhC----CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 441 GQYALRKLYHES----PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 441 ~~~~~~~~~~~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
++.+|++.+... .++++++||++||++|+.+.|.|+++++++.+.+.|+.+|++++++++++|+|+++||+++|++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 466788877643 5799999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+.+....|..+.++|.+|+.+.
T Consensus 116 G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 116 GKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred CEEEEeeCCCCCHHHHHHHHHHH
Confidence 99988888999999999998764
No 121
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.69 E-value=2.9e-16 Score=126.51 Aligned_cols=94 Identities=26% Similarity=0.502 Sum_probs=83.7
Q ss_pred HHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.++|.+.+... +++++++||++||++|+.+.+.++++++++..++.|+.+|++++++++++|+++++||+++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 45677777666 68999999999999999999999999999766899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHH
Q 009224 521 RTVPGVKMKKEYREFI 536 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i 536 (540)
.++.|.. .++|.+.|
T Consensus 82 ~~~~g~~-~~~l~~~~ 96 (97)
T cd02984 82 DRVSGAD-PKELAKKV 96 (97)
T ss_pred EEEeCCC-HHHHHHhh
Confidence 9999974 45577665
No 122
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.69 E-value=2.8e-16 Score=128.18 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=88.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-eE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK-EM 519 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~ 519 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.|.++++++.+.+.|+.+|++++++++++|+|+++|++++|++| +.
T Consensus 6 ~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 85 (103)
T cd03001 6 TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNS 85 (103)
T ss_pred CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcc
Confidence 46678888888888899999999999999999999999999987899999999999999999999999999999888 55
Q ss_pred EEEeeCCCCHHHHHHHH
Q 009224 520 IRTVPGVKMKKEYREFI 536 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i 536 (540)
...+.|..+.++|.+|+
T Consensus 86 ~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 86 PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred eeecCCCCCHHHHHHHh
Confidence 66889999999999886
No 123
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.69 E-value=3.9e-16 Score=134.14 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=82.2
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCc------ccEEEE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMG------TPCVQF 513 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~------~Pt~~~ 513 (540)
.++|++.+.. .+++++++||++||++|+.+.|.++++++++.+ +++|+.||++++++++++|+|++ +||+++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE
Confidence 4567777654 457999999999999999999999999999874 69999999999999999999988 999999
Q ss_pred EeCCeEEEEeeC-----------CCCHHHHHHHH
Q 009224 514 FKNKEMIRTVPG-----------VKMKKEYREFI 536 (540)
Q Consensus 514 ~~~g~~~~~~~g-----------~~~~~~~~~~i 536 (540)
|++|+++.++.| ..+.+++...+
T Consensus 115 f~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 115 FQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred EECCEEEEEEeccccCccccccccccHHHHHHhc
Confidence 999999999996 34566665543
No 124
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.69 E-value=3.9e-16 Score=129.15 Aligned_cols=84 Identities=19% Similarity=0.347 Sum_probs=76.8
Q ss_pred HHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.+.+.+. +++++++||++||++|+.+.|.++++++++. ++.|+++|++++ +++++|+|+++||+++|++|++
T Consensus 11 ~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 11 SKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGEL 88 (113)
T ss_pred HHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEE
Confidence 36788888766 4899999999999999999999999999997 589999999999 9999999999999999999999
Q ss_pred EEEeeCCC
Q 009224 520 IRTVPGVK 527 (540)
Q Consensus 520 ~~~~~g~~ 527 (540)
+.++.|..
T Consensus 89 v~~~~G~~ 96 (113)
T cd02957 89 IDNIVGFE 96 (113)
T ss_pred EEEEecHH
Confidence 99998753
No 125
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.69 E-value=3.4e-16 Score=134.46 Aligned_cols=92 Identities=15% Similarity=0.292 Sum_probs=83.1
Q ss_pred HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC--HHHHHHcCCCcccEEEEE-eCCeEEEEeeC
Q 009224 449 YHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED--PEIAEAAGIMGTPCVQFF-KNKEMIRTVPG 525 (540)
Q Consensus 449 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g 525 (540)
....+++++|+||++||++|+.+.|.++++++++.+++.|+.+|++.+ .+++++|+|.++||++|| ++|+++.++.|
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G 95 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIG 95 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeC
Confidence 456788999999999999999999999999999987788998888764 588999999999999999 58999999999
Q ss_pred CCCHHHHHHHHHhhC
Q 009224 526 VKMKKEYREFIEANK 540 (540)
Q Consensus 526 ~~~~~~~~~~i~~~l 540 (540)
..+.++|.++|++++
T Consensus 96 ~~~~~~l~~~l~~l~ 110 (142)
T cd02950 96 LQPKQVLAQNLDALV 110 (142)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998753
No 126
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.68 E-value=3.5e-16 Score=127.31 Aligned_cols=98 Identities=20% Similarity=0.431 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|++.+. .+++++++||++||++|+.+.+.++++++.+.+ ++.|+.+|++++++++++|+|.++|++++|++|+.
T Consensus 3 ~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 3 ASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred hhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc
Confidence 345677665 788999999999999999999999999999975 69999999999999999999999999999988876
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
..++.|..+.++|.+||++++
T Consensus 82 ~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 82 PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred ceeecCCCCHHHHHHHHHhcC
Confidence 888999999999999999864
No 127
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.67 E-value=6.2e-16 Score=126.11 Aligned_cols=94 Identities=22% Similarity=0.444 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++|.+. ..++++++.||++||++|+.+.|.++++++++. .++.++.+|++++++++++|+|.++||+++|++| .
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 445553 346799999999999999999999999999984 3599999999999999999999999999999877 4
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
..++.|..+.++|.+|+++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 56789999999999999875
No 128
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.67 E-value=7e-16 Score=126.02 Aligned_cols=94 Identities=21% Similarity=0.512 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcC--CHHHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+|.+.+.+ +++++++||++||++|+++.|.++++++.+. ..+.|+.+|+++ +++++++|+|+++||+++|++|
T Consensus 7 ~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g 85 (104)
T cd02997 7 DEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENG 85 (104)
T ss_pred hHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCC
Confidence 4567766644 4599999999999999999999999999886 568999999998 8999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i 536 (540)
+.+.++.|..+.+++.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 86 KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CeeEEeCCCCCHHHHHhhC
Confidence 9899999999999998875
No 129
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.66 E-value=3.9e-16 Score=127.34 Aligned_cols=92 Identities=18% Similarity=0.356 Sum_probs=81.3
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC----CHHHHHHcCCCcccEEEEEe--
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE----DPEIAEAAGIMGTPCVQFFK-- 515 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i~~~Pt~~~~~-- 515 (540)
|.+ ..+.+++++|+||++||++|+.+.+.+ +++.+.+.+++.++.+|+++ +++++++|+++++||+++|+
T Consensus 4 ~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~ 82 (104)
T cd02953 4 LAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPG 82 (104)
T ss_pred HHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 444 446678999999999999999999988 67888887689999999987 57899999999999999997
Q ss_pred CCeEEEEeeCCCCHHHHHHHHH
Q 009224 516 NKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
+|+++.++.|+.+.++|.++|+
T Consensus 83 ~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 83 GEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCcccccccCHHHHHHHhC
Confidence 7999999999999999998874
No 130
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.65 E-value=7.9e-16 Score=126.79 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=79.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE--EeeCCCC
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR--TVPGVKM 528 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~--~~~g~~~ 528 (540)
..+..++++||++||++|+.++|.++++++++ +++.|+.+|.+++++++.+|+|.++||+++|++|+... ++.|..+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 44667889999999999999999999999888 57999999999999999999999999999999875554 7889999
Q ss_pred HHHHHHHHHhhC
Q 009224 529 KKEYREFIEANK 540 (540)
Q Consensus 529 ~~~~~~~i~~~l 540 (540)
.++|.++|+.++
T Consensus 99 ~~el~~~i~~i~ 110 (113)
T cd02975 99 GYEFASLIEDIV 110 (113)
T ss_pred hHHHHHHHHHHH
Confidence 999999998764
No 131
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.65 E-value=2.2e-15 Score=133.65 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=84.5
Q ss_pred cCcHHHHHHHHHhCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 439 HKGQYALRKLYHESP--RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
..+..+|.+.+.+.. .+++++||++||++|+.+.|.+++++.+|+ .++|++||++++ +++.+|+|.++||+++|++
T Consensus 67 i~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~ 144 (175)
T cd02987 67 LDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPALLVYKG 144 (175)
T ss_pred cCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCEEEEEEC
Confidence 344477888876654 499999999999999999999999999997 699999999988 9999999999999999999
Q ss_pred CeEEEEeeCC-------CCHHHHHHHHHh
Q 009224 517 KEMIRTVPGV-------KMKKEYREFIEA 538 (540)
Q Consensus 517 g~~~~~~~g~-------~~~~~~~~~i~~ 538 (540)
|+.+.++.|. .+.+.|+.+|.+
T Consensus 145 G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 145 GELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999988765 346677777665
No 132
>PTZ00051 thioredoxin; Provisional
Probab=99.64 E-value=2.9e-15 Score=120.88 Aligned_cols=92 Identities=25% Similarity=0.519 Sum_probs=80.5
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+++++.+++ +.+++++++||++||++|+.+.+.++++++++. ++.|+.+|++++++++++|++.++||+++|++|+
T Consensus 5 i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 5 VTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred ecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 34556666655 567899999999999999999999999999886 5999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHH
Q 009224 519 MIRTVPGVKMKKEYR 533 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~ 533 (540)
++.++.|. ..++|.
T Consensus 83 ~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 83 VVDTLLGA-NDEALK 96 (98)
T ss_pred EEEEEeCC-CHHHhh
Confidence 99999997 445454
No 133
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.63 E-value=1.9e-15 Score=123.49 Aligned_cols=94 Identities=20% Similarity=0.423 Sum_probs=84.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE- 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~- 518 (540)
..+|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.+|++++ +++..+++.++||+++|++|+
T Consensus 7 ~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~ 85 (104)
T cd02995 7 GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDK 85 (104)
T ss_pred hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCc
Confidence 5578888888889999999999999999999999999999865 699999999987 688899999999999998887
Q ss_pred -EEEEeeCCCCHHHHHHHH
Q 009224 519 -MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 -~~~~~~g~~~~~~~~~~i 536 (540)
...++.|..+.++|.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 86 SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCceEccCCcCHHHHHhhC
Confidence 567889999999998875
No 134
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.63 E-value=1.7e-15 Score=123.99 Aligned_cols=95 Identities=22% Similarity=0.475 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcC-CHHHHHHcCCCcccEEEEEeCC-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEE-DPEIAEAAGIMGTPCVQFFKNK- 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~-~~~~~~~~~i~~~Pt~~~~~~g- 517 (540)
..+|++.+.+.++++++.||++||++|+.+.|.++++++.+. +++.|+.+|+++ +++++++|+|.++|++++|++|
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~ 86 (105)
T cd02998 7 DSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGS 86 (105)
T ss_pred hhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCC
Confidence 456777777778899999999999999999999999999986 469999999999 9999999999999999999777
Q ss_pred eEEEEeeCCCCHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i 536 (540)
+....+.|..+.++|.+||
T Consensus 87 ~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 87 TEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCccccCCccCHHHHHhhC
Confidence 6667888999999998875
No 135
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.62 E-value=1.6e-14 Score=145.96 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=106.3
Q ss_pred EEEEeCCccHHHHH-HHHH----hcCCeEEEEEecccccc---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 243 LAVVGGGDTATEEA-IYLT----KFARHVHLLVRREQLRA---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 243 v~VvG~G~~a~e~a-~~l~----~~g~~v~li~~~~~~~~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
=+|++.+.+|+|.+ ..+. +.|.+|+++.+.+...+ ..+.+.+.+++.|+++++++.+.+++..+ +++..+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~ 296 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVW 296 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEE
Confidence 37789999999998 5564 46999999988876655 23344455778899999999999998764 3333332
Q ss_pred EEEccCCceEEEEccEEEEecccccCcccccc---------ceec---------------c----CCCCEEeCCCcc---
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---------QVEL---------------D----SSGYVIVEEGTA--- 363 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---------~~~~---------------~----~~g~i~vd~~~~--- 363 (540)
..++....+.+|.+|+|+|..++..+... ++.+ . ..-++.+|+.++
T Consensus 297 ---~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~ 373 (422)
T PRK05329 297 ---TRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD 373 (422)
T ss_pred ---eeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence 23355567999999999998766554210 1111 0 011356666653
Q ss_pred ---ccCCCceEEccccCCCcchhh------hhhhchHHHHHHHHHHHH
Q 009224 364 ---KTSVEGVFAAGDVQDHEWRQA------VTAAGSGCIAALSVERYL 402 (540)
Q Consensus 364 ---~t~~~~iya~GD~~~~~~~~~------~~A~~~g~~aa~~i~~~l 402 (540)
++..+||||+|++.++. ..+ ..|+..|..||.+|.+..
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~-d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGY-DPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred CCCCeeccceEEeeehhcCC-chHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 34579999999999863 333 467778888888887543
No 136
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.62 E-value=7.6e-15 Score=122.22 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=75.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-----------HHHHHcC----C
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-----------EIAEAAG----I 505 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~~~----i 505 (540)
+..+|.+.+. +++..+++|+++|||+|+.+.|.|++++++. ++.|+.+|++.++ ++.++|+ +
T Consensus 12 t~~~~~~~i~-~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i 88 (122)
T TIGR01295 12 TVVRALEALD-KKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF 88 (122)
T ss_pred CHHHHHHHHH-cCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC
Confidence 3455666654 4667999999999999999999999999984 5778888888543 4456665 5
Q ss_pred CcccEEEEEeCCeEEEEeeC-CCCHHHHHHHHH
Q 009224 506 MGTPCVQFFKNKEMIRTVPG-VKMKKEYREFIE 537 (540)
Q Consensus 506 ~~~Pt~~~~~~g~~~~~~~g-~~~~~~~~~~i~ 537 (540)
.++||+++|++|+++.+..| ..+.++|.+|+.
T Consensus 89 ~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 89 MGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 56999999999999999999 556899998874
No 137
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.61 E-value=5.7e-15 Score=121.33 Aligned_cols=95 Identities=15% Similarity=0.299 Sum_probs=81.1
Q ss_pred HHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-CHHHHH-HcCCCcccEEEEEeC
Q 009224 442 QYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-DPEIAE-AAGIMGTPCVQFFKN 516 (540)
Q Consensus 442 ~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-~~~~~~-~~~i~~~Pt~~~~~~ 516 (540)
.++|..+.. +.++++++.||++||++|+++.|.++++++.+.+ ++.|+.+|++. +..++. .++++++||+++|++
T Consensus 8 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~ 87 (109)
T cd02993 8 RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPK 87 (109)
T ss_pred HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcC
Confidence 456777774 5678999999999999999999999999999975 59999999998 577886 499999999999966
Q ss_pred C-eEEEEeeCC-CCHHHHHHHH
Q 009224 517 K-EMIRTVPGV-KMKKEYREFI 536 (540)
Q Consensus 517 g-~~~~~~~g~-~~~~~~~~~i 536 (540)
| .....+.|. ++.+.|.+||
T Consensus 88 ~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 88 NSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCCceeccCCCCCHHHHHhhC
Confidence 5 567788884 7988888875
No 138
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=7.7e-15 Score=118.94 Aligned_cols=94 Identities=24% Similarity=0.468 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-e
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK-E 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~ 518 (540)
..+|.+.+.+.+ +++++||++||++|+.+.+.++++++.+ .+++.|+.+|++++++++++|+|+++||+++|+++ +
T Consensus 5 ~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 83 (101)
T cd02961 5 DDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSK 83 (101)
T ss_pred HHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCc
Confidence 446777776666 9999999999999999999999999999 56899999999999999999999999999999877 8
Q ss_pred EEEEeeCCCCHHHHHHHH
Q 009224 519 MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i 536 (540)
...++.|..+.++|.+|+
T Consensus 84 ~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 84 EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred ccccCCCCcCHHHHHhhC
Confidence 888899999998888774
No 139
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.5e-15 Score=130.99 Aligned_cols=100 Identities=21% Similarity=0.486 Sum_probs=87.4
Q ss_pred cCcHHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 439 HKGQYALRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 439 ~~~~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
.+++..|+..+ ....+.+++.|++.||+||+.+.|.|+.++++|. +..|.+||+++....+..++|.++|||++|.||
T Consensus 6 v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 6 VNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred ecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 44566666666 4556899999999999999999999999999997 577999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++++.|.. ..-|++.+.+++
T Consensus 85 ~kid~~qGAd-~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 85 VKIDQIQGAD-ASGLEEKVAKYA 106 (288)
T ss_pred eEeeeecCCC-HHHHHHHHHHHh
Confidence 9999999984 445888887763
No 140
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.58 E-value=1.7e-14 Score=121.97 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=78.8
Q ss_pred HHhCC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEECcCC-------------HHHHHHcCCCcccEE
Q 009224 449 YHESP-RLICVLYTSPTCGPCRTLKPILG---KVIDEFDENVHFVEIDIEED-------------PEIAEAAGIMGTPCV 511 (540)
Q Consensus 449 ~~~~~-~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~i~~~Pt~ 511 (540)
.++.+ ++++|+||++||++|+.+.+.+. ++.+.+.+++.++.+|++.+ .+++.+|+|.++||+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 44556 99999999999999999999885 56666666788999999865 689999999999999
Q ss_pred EEEeC--CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 512 QFFKN--KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 512 ~~~~~--g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+||.+ |+++.++.|..+.+++.++|+.+
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 99954 69999999999999999999875
No 141
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.56 E-value=5.3e-14 Score=111.93 Aligned_cols=91 Identities=35% Similarity=0.736 Sum_probs=81.6
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEee
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 524 (540)
|.+.+... ++++++||++||++|+.+.+.++++.++ .+++.|+.+|++++++++++|++.++|+++++++|+.+..+.
T Consensus 3 ~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 3 FEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred hHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 34444444 8999999999999999999999999988 557999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH
Q 009224 525 GVKMKKEYREFIE 537 (540)
Q Consensus 525 g~~~~~~~~~~i~ 537 (540)
|..+.++|.++|+
T Consensus 81 g~~~~~~l~~~i~ 93 (93)
T cd02947 81 GADPKEELEEFLE 93 (93)
T ss_pred cCCCHHHHHHHhC
Confidence 9999888998874
No 142
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.54 E-value=9e-14 Score=108.04 Aligned_cols=81 Identities=31% Similarity=0.487 Sum_probs=73.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~ 535 (540)
.+..||++||++|+.+.|.+++++++++.++.++.+|.+++++++++|++.++||+++ +|+. ++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4678999999999999999999999998779999999999999999999999999886 7763 78899999999999
Q ss_pred HHhhC
Q 009224 536 IEANK 540 (540)
Q Consensus 536 i~~~l 540 (540)
|++.|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 98865
No 143
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.51 E-value=1.6e-13 Score=123.37 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=78.9
Q ss_pred HHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.+.+... +.+++|+||++||++|+.+.|.|++++.+|. .++|++||+++. +.+|++..+||+++|++|+.
T Consensus 89 ~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~ 164 (192)
T cd02988 89 KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTILVYRNGDI 164 (192)
T ss_pred HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEE
Confidence 45667655544 3589999999999999999999999999997 599999999864 67999999999999999999
Q ss_pred EEEeeCC-------CCHHHHHHHHHh
Q 009224 520 IRTVPGV-------KMKKEYREFIEA 538 (540)
Q Consensus 520 ~~~~~g~-------~~~~~~~~~i~~ 538 (540)
+.++.|. .+.+.|+.+|.+
T Consensus 165 v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 165 VKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999875 456777777754
No 144
>PTZ00062 glutaredoxin; Provisional
Probab=99.50 E-value=2e-13 Score=122.93 Aligned_cols=89 Identities=13% Similarity=0.273 Sum_probs=77.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.++|.+.+.++...++++||++||++|+.+.+.+++++++++ +++|+.||.+ |+|.++|||++|++|+++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 4566777777665789999999999999999999999999997 6999999987 999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.|.. ..++.++++++
T Consensus 76 ~r~~G~~-~~~~~~~~~~~ 93 (204)
T PTZ00062 76 NSLEGCN-TSTLVSFIRGW 93 (204)
T ss_pred eeeeCCC-HHHHHHHHHHH
Confidence 9999985 45577777653
No 145
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.49 E-value=1.2e-13 Score=114.10 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=70.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECc--CCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
+..+|.+.+.+.++++++.||++||++|+.+.|.|+++++++. +.+.|..+|++ ++++++++|+|+++||+++|+
T Consensus 7 ~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~ 86 (114)
T cd02992 7 DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFP 86 (114)
T ss_pred CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEEC
Confidence 4667889988888999999999999999999999999999874 35899999985 467899999999999999998
Q ss_pred CCeE
Q 009224 516 NKEM 519 (540)
Q Consensus 516 ~g~~ 519 (540)
+|+.
T Consensus 87 ~~~~ 90 (114)
T cd02992 87 PFSK 90 (114)
T ss_pred CCCc
Confidence 8863
No 146
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.48 E-value=2.5e-13 Score=136.90 Aligned_cols=99 Identities=15% Similarity=0.274 Sum_probs=83.6
Q ss_pred cHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH-HHH-HHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP-EIA-EAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~-~~~-~~~~i~~~Pt~~~~~ 515 (540)
+..+|++.+. +.+++++|+||++||++|+.+.|.|+++++++.+ .+.|+.||++.+. +++ ++|+|+++||++||+
T Consensus 357 ~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk 436 (463)
T TIGR00424 357 SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFP 436 (463)
T ss_pred CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEE
Confidence 3557888774 6788999999999999999999999999999975 4899999999764 454 789999999999999
Q ss_pred CCe-EEEEee-CCCCHHHHHHHHHhh
Q 009224 516 NKE-MIRTVP-GVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~-~~~~~~-g~~~~~~~~~~i~~~ 539 (540)
+|. ....|. |.++.+.|..||+.+
T Consensus 437 ~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 437 KHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 885 334576 589999999999864
No 147
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.48 E-value=2.1e-13 Score=111.70 Aligned_cols=94 Identities=16% Similarity=0.321 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHhC-CCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-------CHHHHHHcC
Q 009224 440 KGQYALRKLYHES-PRLICVLYTS-------PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-------DPEIAEAAG 504 (540)
Q Consensus 440 ~~~~~~~~~~~~~-~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~~~~ 504 (540)
.+..+|.+.+... +++++|.||+ +||++|+.+.|.++++.+++.+++.|++||+++ +.++..+++
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 4567777877754 5899999999 999999999999999999998779999999976 458999999
Q ss_pred CC-cccEEEEEeCCeEEEEeeCC--CCHHHHHHHH
Q 009224 505 IM-GTPCVQFFKNKEMIRTVPGV--KMKKEYREFI 536 (540)
Q Consensus 505 i~-~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~i 536 (540)
|. ++||+++|++|+.+ .+. .+.+.+..|+
T Consensus 87 I~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRL---VEDECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence 98 99999999887543 333 2455555554
No 148
>PLN02309 5'-adenylylsulfate reductase
Probab=99.48 E-value=3.3e-13 Score=135.98 Aligned_cols=99 Identities=12% Similarity=0.263 Sum_probs=85.1
Q ss_pred cHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-CCHHHHH-HcCCCcccEEEEEe
Q 009224 441 GQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-EDPEIAE-AAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-~~~~~~~-~~~i~~~Pt~~~~~ 515 (540)
+.++|.+++. +.+++++|+||++||++|+.+.|.|+++++++.+ ++.|+++|++ .+.++++ +|+|+++||++||+
T Consensus 351 t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 351 SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 4567787763 6788999999999999999999999999999964 5999999999 7788886 59999999999998
Q ss_pred CCe-EEEEee-CCCCHHHHHHHHHhh
Q 009224 516 NKE-MIRTVP-GVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~-~~~~~~-g~~~~~~~~~~i~~~ 539 (540)
+|. ....+. +.++.+.|.+||+++
T Consensus 431 ~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 431 KNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 875 334565 478999999999875
No 149
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.47 E-value=2.9e-13 Score=110.24 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=80.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCC--cccEEEEEeC--CeEEEEeeCCCC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM--GTPCVQFFKN--KEMIRTVPGVKM 528 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~~~ 528 (540)
++++++.|+++||++|+.+.+.++++++++.+++.|+.+|+++++++++.|++. ++|+++++++ |+......+..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999888999999999999999999999 9999999988 666655556668
Q ss_pred HHHHHHHHHhhC
Q 009224 529 KKEYREFIEANK 540 (540)
Q Consensus 529 ~~~~~~~i~~~l 540 (540)
.+.|.+|+++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999999864
No 150
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.47 E-value=2.3e-13 Score=110.31 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=74.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhCCCeEEEEEEC-----cCCHHHHHHcCCC--cc
Q 009224 441 GQYALRKLYHESPRLICVLYTS--PTCG---PCRTLKPILGKVIDEFDENVHFVEIDI-----EEDPEIAEAAGIM--GT 508 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~--~~C~---~C~~~~~~~~~~~~~~~~~~~~~~vd~-----~~~~~~~~~~~i~--~~ 508 (540)
+..+|++.+ +.++.++|.||+ |||+ +|+.+.|.+.+.+. .+.+.+||| .++.+||++|+|+ ++
T Consensus 7 ~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 7 DTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred ChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 366788866 555789999999 7887 56665555544332 488999999 4678899999999 99
Q ss_pred cEEEEEeCCe--EEEEeeCC-CCHHHHHHHHHhh
Q 009224 509 PCVQFFKNKE--MIRTVPGV-KMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~~~g~--~~~~~~g~-~~~~~~~~~i~~~ 539 (540)
||+++|++|+ ....+.|. ++.+.|.+||.+.
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999985 44678896 9999999999874
No 151
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.46 E-value=7.4e-13 Score=127.58 Aligned_cols=115 Identities=30% Similarity=0.523 Sum_probs=89.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeeccCc------cccCCC--------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTTTE------VENFPG-------------- 147 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~~~------~~~~~~-------------- 147 (540)
+.+||+|||||||||+||..++++|++|+|||+.+..+ .-||.++.+.. ..++|+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35899999999999999999999999999999987733 11233332211 122332
Q ss_pred ----------------------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCe-EEEecEEEE
Q 009224 148 ----------------------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGER-KVKCHSIVF 203 (540)
Q Consensus 148 ----------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvi 203 (540)
||.......+++.+...+++.||+++++ +|.+++.++..+.+.+.+. ++++|.+|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 3333456778899999999999999998 8999999988899988544 899999999
Q ss_pred ccCC
Q 009224 204 ATGA 207 (540)
Q Consensus 204 AtG~ 207 (540)
|||.
T Consensus 162 AtGG 165 (408)
T COG2081 162 ATGG 165 (408)
T ss_pred ecCC
Confidence 9994
No 152
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.5e-13 Score=135.66 Aligned_cols=96 Identities=20% Similarity=0.442 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++|.. .+..+..+++.||+|||++|+.+.|.+++.+..+.. .++.++||++++.++|.+|+|+++||+.+|+||+.
T Consensus 33 dnf~~-~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 33 DNFKE-TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRS 111 (493)
T ss_pred ccHHH-HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCc
Confidence 33444 455667899999999999999999999999998853 68999999999999999999999999999999988
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
...|+|.+..+.|..|+.+.
T Consensus 112 ~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 112 AQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred ceeccCcccHHHHHHHHHhc
Confidence 88999999999999999874
No 153
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.3e-13 Score=137.60 Aligned_cols=114 Identities=18% Similarity=0.363 Sum_probs=94.0
Q ss_pred CCCCCCCcceeeeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHH
Q 009224 424 TDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAE 501 (540)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~ 501 (540)
.+++++++.+-.-|+.....+|++++.+..+-+++.||+|||++|+++.|.+++|++.+.+ ++.+.++|.+.|.- .
T Consensus 355 kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~ 432 (493)
T KOG0190|consen 355 KSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--P 432 (493)
T ss_pred ccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--c
Confidence 3455666655444555557789999999999999999999999999999999999999974 79999999998852 3
Q ss_pred HcCCCcccEEEEEeCCe--EEEEeeCCCCHHHHHHHHHhh
Q 009224 502 AAGIMGTPCVQFFKNKE--MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~~~Pt~~~~~~g~--~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.+.+.++|||.+|+.|. ....+.|.++.++|..|+++.
T Consensus 433 ~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 433 SLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred cccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 34677799999998875 346789999999999999863
No 154
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.41 E-value=3.7e-13 Score=122.77 Aligned_cols=95 Identities=25% Similarity=0.450 Sum_probs=84.4
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHh----C-CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEF----D-ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~----~-~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++.++ .+.+.+++.||++||+.++.++|.|++.+..+ + +++.+..|||+++..++++|.|..+||+.+|.||..
T Consensus 6 ~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 6 IDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred HHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccch
Confidence 34444 44889999999999999999999999887765 3 479999999999999999999999999999999988
Q ss_pred EE-EeeCCCCHHHHHHHHHhhC
Q 009224 520 IR-TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~-~~~g~~~~~~~~~~i~~~l 540 (540)
.. .|.|.++.+-|.+||++.+
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHh
Confidence 87 6899999999999999864
No 155
>PTZ00102 disulphide isomerase; Provisional
Probab=99.41 E-value=9.5e-13 Score=138.25 Aligned_cols=100 Identities=15% Similarity=0.350 Sum_probs=90.2
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
...+|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ .+.++.+|++++...+++++++++||+++|++|+
T Consensus 363 ~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~ 442 (477)
T PTZ00102 363 VGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGE 442 (477)
T ss_pred cccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCC
Confidence 36678888888899999999999999999999999999998864 5899999999999999999999999999998886
Q ss_pred EE-EEeeCCCCHHHHHHHHHhhC
Q 009224 519 MI-RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~-~~~~g~~~~~~~~~~i~~~l 540 (540)
.+ .++.|..+.+.+.+||+++.
T Consensus 443 ~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 443 RTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred cceeEecCcCCHHHHHHHHHHcC
Confidence 55 57899999999999998763
No 156
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.41 E-value=1.6e-12 Score=136.06 Aligned_cols=98 Identities=21% Similarity=0.497 Sum_probs=87.4
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
+..+|.+.+. .++++++.||++||++|+.+.|.+.++++.+.+ ++.|+.+||++++++|++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~i~-~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 85 (462)
T TIGR01130 7 TKDNFDDFIK-SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNG 85 (462)
T ss_pred CHHHHHHHHh-cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCC
Confidence 3566777664 566899999999999999999999999888753 499999999999999999999999999999999
Q ss_pred eE-EEEeeCCCCHHHHHHHHHhh
Q 009224 518 EM-IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~-~~~~~g~~~~~~~~~~i~~~ 539 (540)
+. +..+.|..+.+.|.+|+.+.
T Consensus 86 ~~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 86 EDSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred ccceeEecCCCCHHHHHHHHHHh
Confidence 87 78899999999999999875
No 157
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.40 E-value=2.2e-10 Score=113.53 Aligned_cols=177 Identities=19% Similarity=0.165 Sum_probs=106.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCcc------------c-cCCCCC--------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEV------------E-NFPGFP-------- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~------------~-~~~~~~-------- 149 (540)
+++|+|||||++|+.+|.+|.+. ...|.|+|+.... |.-+.+.... . ..|..|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~ 77 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQ 77 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCCCCchhhhccccccccccCCCCchHHHHHHH
Confidence 47899999999999999999886 2239999997662 2222222111 0 001100
Q ss_pred -----------------CCCChHHHHHHHH----HHHHHhC---CEEEEeeEEEEEee--CCcEEEEE-CCeEEEecEEE
Q 009224 150 -----------------DGITGPDLMDRMR----RQAERWG---AELHQEDVEFIDVK--SNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 150 -----------------~~~~~~~~~~~~~----~~~~~~~---v~~~~~~v~~i~~~--~~~~~v~~-~~~~~~~d~lv 202 (540)
.+....-+-+|+. .++++.. +.++..+++++... ...+.+.. ++....+|-+|
T Consensus 78 ~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~V 157 (474)
T COG4529 78 KQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIV 157 (474)
T ss_pred hcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEE
Confidence 0111222233333 3344333 66677788877766 44444443 67778999999
Q ss_pred EccCCCCCCCCCCCcccccCC-CeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC--eEEEEEecc
Q 009224 203 FATGATAKRLNLPREDEFWSR-GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR--HVHLLVRRE 273 (540)
Q Consensus 203 iAtG~~~~~~~ipg~~~~~~~-~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~--~v~li~~~~ 273 (540)
+|||..+..++.-..+..... .+......+....+....+|+|+|+|.+.+|....|.++|. +||.+.|+.
T Consensus 158 latgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 158 LATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred EeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 999976543332111111001 11122222333344556779999999999999999999875 689999876
No 158
>PTZ00102 disulphide isomerase; Provisional
Probab=99.39 E-value=2.3e-12 Score=135.34 Aligned_cols=96 Identities=21% Similarity=0.461 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+. .++.+++.||++||++|+++.|.++++++.+. .++.|+.+||+++.++|++|+|.++||+++|++|+
T Consensus 39 ~~~f~~~i~-~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 39 DSTFDKFIT-ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred hhhHHHHHh-cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 556677654 45789999999999999999999999987764 36999999999999999999999999999999998
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.+ ++.|.++.+.|.+|+++.
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHh
Confidence 77 899999999999999875
No 159
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.39 E-value=1.8e-12 Score=120.16 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=74.5
Q ss_pred CeEEEEEEC---CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE-EeeCCCC
Q 009224 454 RLICVLYTS---PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR-TVPGVKM 528 (540)
Q Consensus 454 ~~~~v~f~~---~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~-~~~g~~~ 528 (540)
...++.|++ +||++|+.+.|.+++++++++. .+.++.+|.+++++++++|+|.++||+++|++|+.+. ++.|..+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 344666777 9999999999999999999963 3556777777999999999999999999999999884 8999999
Q ss_pred HHHHHHHHHhh
Q 009224 529 KKEYREFIEAN 539 (540)
Q Consensus 529 ~~~~~~~i~~~ 539 (540)
.+++.+||+.+
T Consensus 100 ~~~l~~~i~~~ 110 (215)
T TIGR02187 100 GYEFAALIEDI 110 (215)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 160
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.39 E-value=2.3e-12 Score=97.81 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=61.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCC-CCHHHHHHHH
Q 009224 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGV-KMKKEYREFI 536 (540)
Q Consensus 458 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~i 536 (540)
+.||++||++|+.+.|.+++++++++..+.|+.+| +.+.+.+|++.++||+++ ||+++ +.|. .+.+++.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 78999999999999999999999998778888877 455588899999999988 99877 6775 4557788776
No 161
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.37 E-value=9.4e-13 Score=108.97 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=69.4
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-HHHHHcCCCc--ccEEEEE-eCCeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-EIAEAAGIMG--TPCVQFF-KNKEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~i~~--~Pt~~~~-~~g~~~~ 521 (540)
.+.....+++++|.||++||++|+.+.|.+.+.......+..|+.+|++.+. ...++|++.+ +||++|| ++|+++.
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 3556778899999999999999999999999977655434567777777664 3457889976 9999999 5999887
Q ss_pred E---eeCCCCHHHHHHHHH
Q 009224 522 T---VPGVKMKKEYREFIE 537 (540)
Q Consensus 522 ~---~~g~~~~~~~~~~i~ 537 (540)
+ ..|+...+.+.+.|+
T Consensus 92 ~~~~~~~~~~~~~f~~~~~ 110 (117)
T cd02959 92 EIINKKGNPNYKYFYSSAA 110 (117)
T ss_pred hhccCCCCccccccCCCHH
Confidence 4 445555554544443
No 162
>PHA02125 thioredoxin-like protein
Probab=99.36 E-value=5.6e-12 Score=95.57 Aligned_cols=71 Identities=25% Similarity=0.489 Sum_probs=60.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC-CHHHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK-MKKEYREF 535 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-~~~~~~~~ 535 (540)
+++||++||++|+.+.|.++++. +.++.+|.+++++++++|+|.++||++ +|+.+.++.|.. +..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 68999999999999999997652 458999999999999999999999987 788888999963 33566655
Q ss_pred H
Q 009224 536 I 536 (540)
Q Consensus 536 i 536 (540)
+
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 163
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.34 E-value=9.5e-12 Score=125.48 Aligned_cols=115 Identities=29% Similarity=0.480 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeeccC-cc------ccCCC---------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTTT-EV------ENFPG--------------- 147 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~~-~~------~~~~~--------------- 147 (540)
|||+|||||||||.||..|++.|++|+|+||++..+ .-+|+...+. .. ..++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 699999999999999999999999999999987744 1123333222 00 01110
Q ss_pred ---------------------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEE-CCeEEEecEEEE
Q 009224 148 ---------------------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVF 203 (540)
Q Consensus 148 ---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lvi 203 (540)
+|......++.+.+...+++.|++++.+ +|.++..+++. |.|.. +...+.+|+|||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence 1222345678888889999999999988 89999987776 99998 889999999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|||+..
T Consensus 161 AtGG~S 166 (409)
T PF03486_consen 161 ATGGKS 166 (409)
T ss_dssp ----SS
T ss_pred ecCCCC
Confidence 999753
No 164
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.33 E-value=1.5e-11 Score=114.10 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=74.7
Q ss_pred HHhCCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC
Q 009224 449 YHESPRL-ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK 527 (540)
Q Consensus 449 ~~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 527 (540)
+.+.+++ .++.||++||++|+.+.+.+++++.+++ ++.+..+|.+++++++++|+|.++||++++++|+. +.|..
T Consensus 128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~ 203 (215)
T TIGR02187 128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAY 203 (215)
T ss_pred HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCC
Confidence 3334444 5555999999999999999999998864 79999999999999999999999999999988864 88999
Q ss_pred CHHHHHHHHHh
Q 009224 528 MKKEYREFIEA 538 (540)
Q Consensus 528 ~~~~~~~~i~~ 538 (540)
+.++|.++|++
T Consensus 204 ~~~~l~~~l~~ 214 (215)
T TIGR02187 204 PEEQFLEYILS 214 (215)
T ss_pred CHHHHHHHHHh
Confidence 99999999875
No 165
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.33 E-value=1.3e-11 Score=102.39 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=74.1
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHHHHH--------cCCCcccEEEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEIAEA--------AGIMGTPCVQFF 514 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~i~~~Pt~~~~ 514 (540)
.+.+.+.+++++++|+++||++|+.+.+.. .++.+.+..++.++++|.++++++.++ |++.++|+++|+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 466788899999999999999999998743 467777766799999999998887653 589999999999
Q ss_pred -eCCeEEEEeeCC-----CCHHHHHHHHHhh
Q 009224 515 -KNKEMIRTVPGV-----KMKKEYREFIEAN 539 (540)
Q Consensus 515 -~~g~~~~~~~g~-----~~~~~~~~~i~~~ 539 (540)
.+|+++....+. .+...+.++++++
T Consensus 88 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 88 TPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 789998776554 3334566666543
No 166
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.33 E-value=3.5e-12 Score=105.58 Aligned_cols=86 Identities=23% Similarity=0.500 Sum_probs=67.3
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHH---HHHhCCCeEEEEEECcCC--------------------HHHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKV---IDEFDENVHFVEIDIEED--------------------PEIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~---~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~i~~ 507 (540)
.++++++++|+++||++|+.+.+.+.+. ...+.+++.++.++++.. .+++++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4678999999999999999999999864 344445688888888753 35889999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHH
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+||++++ ++|+++.++.|+.+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 5899999999999999998875
No 167
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.32 E-value=1.5e-11 Score=106.15 Aligned_cols=86 Identities=16% Similarity=0.306 Sum_probs=67.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC------------HHHH-HHc---CCCcccEEEEE-e
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED------------PEIA-EAA---GIMGTPCVQFF-K 515 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------~~~~-~~~---~i~~~Pt~~~~-~ 515 (540)
.+..+++||++||++|+++.|.+++++++++ +.++.|+.++. .+.. ..| ++.++||++++ +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4456999999999999999999999999984 55555555532 3333 345 78999999999 5
Q ss_pred CCeE-EEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEM-IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~-~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+. ..+..|..+.+++.+.|+++|
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 6664 567899999999999998875
No 168
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.31 E-value=3.1e-12 Score=116.30 Aligned_cols=87 Identities=29% Similarity=0.519 Sum_probs=76.5
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK 527 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 527 (540)
+.+..+++.||+|||.+|+++.|.|.++--++.+ .+++.++|++..+.++.+|+|+++||+.+|+++..+ -+.|.+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~-dYRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI-DYRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee-ecCCCc
Confidence 4467899999999999999999999998776643 589999999999999999999999999999999544 467888
Q ss_pred CHHHHHHHHHh
Q 009224 528 MKKEYREFIEA 538 (540)
Q Consensus 528 ~~~~~~~~i~~ 538 (540)
.++.|.+|-.+
T Consensus 120 ~Kd~iieFAhR 130 (468)
T KOG4277|consen 120 EKDAIIEFAHR 130 (468)
T ss_pred cHHHHHHHHHh
Confidence 99999998765
No 169
>PRK09897 hypothetical protein; Provisional
Probab=99.29 E-value=2.3e-10 Score=119.11 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=96.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccC-cc-----cc-----CC--------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTT-EV-----EN-----FP-------------- 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~-~~-----~~-----~~-------------- 146 (540)
+++|+|||||++|+++|.+|.+.+ ++|+|||+... +|.-+.+.. .. .+ .|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~---~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~ 77 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE---AGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQE 77 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC---CCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhh
Confidence 468999999999999999998864 58999999665 332111110 00 00 00
Q ss_pred ------------------CCCCCCCh---HHHHHHHHHHHHHhC--CEEEEe-eEEEEEeeCCcEEEEE-C-CeEEEecE
Q 009224 147 ------------------GFPDGITG---PDLMDRMRRQAERWG--AELHQE-DVEFIDVKSNPFTVKS-G-ERKVKCHS 200 (540)
Q Consensus 147 ------------------~~~~~~~~---~~~~~~~~~~~~~~~--v~~~~~-~v~~i~~~~~~~~v~~-~-~~~~~~d~ 200 (540)
.+|....+ .+..+.+.+.+...| +.++.+ +|++++..++.+.+.. + +..+.+|+
T Consensus 78 ~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~ 157 (534)
T PRK09897 78 DSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDL 157 (534)
T ss_pred HHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCE
Confidence 01111222 122222333334445 566655 8999998888888875 3 46789999
Q ss_pred EEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc
Q 009224 201 IVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF 262 (540)
Q Consensus 201 lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~ 262 (540)
||+|||..+..+ .++...+...... ........+.+|+|+|.|.+++|++..|...
T Consensus 158 VVLAtGh~~p~~-~~~~~~yi~~pw~-----~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 158 AVIATGHVWPDE-EEATRTYFPSPWS-----GLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEECCCCCCCCC-ChhhccccCCCCc-----chhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999743211 1222212111111 0111112478999999999999999988755
No 170
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.25 E-value=4.9e-11 Score=121.95 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=76.1
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEE----------------------------CcCCHHHH
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEID----------------------------IEEDPEIA 500 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd----------------------------~~~~~~~~ 500 (540)
.+.+++++|+||++||++|+.+.|.++++++++. +++.|+.|. .|.+.+++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 3468899999999999999999999999999986 346665443 34566788
Q ss_pred HHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 501 EAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+.|+|.++||++++ ++|+++.++.|..+.++|.++|+.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 99999999988666 899999999999999999999984
No 171
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.24 E-value=4.2e-11 Score=126.38 Aligned_cols=100 Identities=13% Similarity=0.270 Sum_probs=83.1
Q ss_pred cCcHHHHHHHH---HhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCC----HHHHHHcCCCcc
Q 009224 439 HKGQYALRKLY---HESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEED----PEIAEAAGIMGT 508 (540)
Q Consensus 439 ~~~~~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~~ 508 (540)
..+.+++++.+ ...+++++++||++||++|+.+.+.+ .++.++++ ++.++++|++++ .+++++|++.++
T Consensus 457 i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 457 IKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 34555566654 34578999999999999999999875 67777776 588999999864 578999999999
Q ss_pred cEEEEEe-CCeEE--EEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFFK-NKEMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~~-~g~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
||+++|+ +|+++ .++.|..+.+++.+++++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 9999995 88874 6889999999999999875
No 172
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.24 E-value=2.8e-11 Score=126.70 Aligned_cols=97 Identities=16% Similarity=0.429 Sum_probs=85.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
...+|.+++.+.+++++++||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+. +.. +++.++||+++|++|
T Consensus 352 ~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 352 VGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAG 429 (462)
T ss_pred eCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCC
Confidence 35667888888899999999999999999999999999999986 7999999999875 333 999999999999988
Q ss_pred eEE--EEeeCCCCHHHHHHHHHhh
Q 009224 518 EMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
+.. ..+.|..+.+.|.+||++.
T Consensus 430 ~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 430 KKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred CCcCceEecCcCCHHHHHHHHHhc
Confidence 653 5788999999999999875
No 173
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.24 E-value=1.1e-10 Score=91.19 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=65.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
+...+..|+++||++|....+.++++++.++ ++.|..+|.++.++++++|+|.++|++++ ||+.+.. |..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 3457888899999999999999999999886 69999999999999999999999999864 8887664 77676665
Q ss_pred H
Q 009224 533 R 533 (540)
Q Consensus 533 ~ 533 (540)
.
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 4
No 174
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.22 E-value=1e-10 Score=105.79 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=70.9
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-----------------------HHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-----------------------EIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~i~~ 507 (540)
..+++++++||++||++|+...|.++++.++ ++.++.|+.+++. .+.+.|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3578999999999999999999999998653 4777888765433 2345689999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+++ ++|+++.++.|..+.++++++|+.++
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 9966666 79999999999999999988887653
No 175
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.21 E-value=2.3e-10 Score=94.63 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=80.7
Q ss_pred HHHHHHhCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 445 LRKLYHESPRLICVLYT--SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+...+. .....++.|- ...++.+..+.-.+++++++|++ +++|+++|++++++++.+|+|.++||++||+||+.+.
T Consensus 27 ~~~~~~-~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 27 LDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG 105 (132)
T ss_pred HHHHHh-CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE
Confidence 344443 3334555554 33588999999999999999974 5999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|++++
T Consensus 106 ~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 106 VLNGIHPWAELINLMRGLV 124 (132)
T ss_pred EEeCcCCHHHHHHHHHHHh
Confidence 9999999999999999864
No 176
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.21 E-value=9.2e-11 Score=104.91 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=70.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------cCCHHHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------EEDPEIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~i~~ 507 (540)
..+++++++||++||++|+.+.|.++++.++ ++.++.++. |.+.++.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3578999999999999999999999998764 355555554 33345677889999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+++ ++|+++.++.|..+.+++.++|++++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 9966666 89999999999999999999998864
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.20 E-value=1.3e-08 Score=108.30 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=70.8
Q ss_pred HHHHhCCCeE-EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeC
Q 009224 447 KLYHESPRLI-CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 447 ~~~~~~~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 525 (540)
+.+.+-++++ +-.|.+++|++|..+...+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ ||+.+ +.|
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G 543 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFG 543 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--Eee
Confidence 3344444554 556789999999999999999999987 69999999999999999999999999665 77654 558
Q ss_pred CCCHHHHHHHH
Q 009224 526 VKMKKEYREFI 536 (540)
Q Consensus 526 ~~~~~~~~~~i 536 (540)
..+.++|.++|
T Consensus 544 ~~~~~~~~~~~ 554 (555)
T TIGR03143 544 KKTIEEMLELI 554 (555)
T ss_pred CCCHHHHHHhh
Confidence 88999998886
No 178
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.20 E-value=9.9e-11 Score=99.20 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=65.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------cCCHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------EEDPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.|.++++.++++ +.++.|+. |.+.++++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 36899999999999999999999999988873 66666653 445577888999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHH
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~ 532 (540)
|+.+++ ++|+++.++.|..+.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 966665 799999999999887754
No 179
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.20 E-value=2.5e-10 Score=108.71 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=71.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------CHHHHHHcCCCcccEEEEEeC-Ce
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------DPEIAEAAGIMGTPCVQFFKN-KE 518 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~i~~~Pt~~~~~~-g~ 518 (540)
-.+++++++||++||++|+.+.|.+++++++++ +.++.|++|. +..++++|+|.++|+++|+++ |+
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 347899999999999999999999999999995 5566666654 357899999999999999965 54
Q ss_pred EE-EEeeCCCCHHHHHHHHHhh
Q 009224 519 MI-RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~-~~~~g~~~~~~~~~~i~~~ 539 (540)
.+ ....|..+.++|.+.|...
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 44 4567999999999888653
No 180
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.19 E-value=1.2e-10 Score=86.37 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=54.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
-+..|+++||++|+.+.+.++++++.++ ++.|..+|++++++++++|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 3678999999999999999999987764 69999999999999999999999999755 66543
No 181
>PLN02697 lycopene epsilon cyclase
Probab=99.19 E-value=3.9e-09 Score=110.00 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=81.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC---c----c-c-------cCC-------CCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT---E----V-E-------NFP-------GFP 149 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~---~----~-~-------~~~-------~~~ 149 (540)
...+||+||||||||+++|..|++.|++|+|+|+........|.|...- . . + .++ +.+
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 4468999999999999999999999999999997432111111111000 0 0 0 000 111
Q ss_pred C-CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEE--EECCeEEEecEEEEccCCCC
Q 009224 150 D-GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV--KSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v--~~~~~~~~~d~lviAtG~~~ 209 (540)
. .+....+.+.+.+.+.+.|++++..+|+.+..+++.+.+ ..++.++.++.||.|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 1 145567778888888888999977799998876666543 23667899999999999865
No 182
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.18 E-value=2.7e-10 Score=94.38 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEE-e-C
Q 009224 444 ALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFF-K-N 516 (540)
Q Consensus 444 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~-~-~ 516 (540)
+-.+...+.+++++|+|+++||++|+.+.... +++.+.+..+..++.+|.+ +..++++.|++.++|+++++ . +
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 34566778899999999999999999998754 5666677667888888887 45678999999999999999 4 6
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+.+.+..|..+.++|.+.|++.
T Consensus 88 g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 88 GEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CcEeEEEcCCCCHHHHHHHHHHH
Confidence 99999999999999999988864
No 183
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.18 E-value=2.5e-10 Score=102.45 Aligned_cols=88 Identities=16% Similarity=0.454 Sum_probs=77.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+...+.+.++.+++.+ ++.++.++++. +.++++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 568899999999999999999999999999975 58899888753 3567889999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++++ ++|+.+..+.|..+.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 988888 6899988999999999999999875
No 184
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.16 E-value=1.8e-10 Score=98.30 Aligned_cols=71 Identities=11% Similarity=0.353 Sum_probs=58.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEECcCCH-------------------------H
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--------NVHFVEIDIEEDP-------------------------E 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--------~~~~~~vd~~~~~-------------------------~ 498 (540)
.+++++++|||+||++|+++.|.++++++++.+ ++.++.|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 578999999999999999999999998876542 4888888877432 4
Q ss_pred HHHHcCCCcccEEEEE-eCCeEEEE
Q 009224 499 IAEAAGIMGTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 499 ~~~~~~i~~~Pt~~~~-~~g~~~~~ 522 (540)
++++|++.++|+++++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 6677899999999999 68988765
No 185
>PLN02463 lycopene beta cyclase
Probab=99.10 E-value=2e-09 Score=110.42 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=84.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc--ceeec----cCc----cccCC--------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG--GQLMT----TTE----VENFP-------------- 146 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g--g~~~~----~~~----~~~~~-------------- 146 (540)
....+||+||||||||+++|..|++.|++|+|+|+.+...++. +.|.. ... .+..+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 3445899999999999999999999999999999865322111 11000 000 00000
Q ss_pred CCCC-CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 147 GFPD-GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 147 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
..+. .+...++.+.+.+.+.+.|++++..+|+.++..++.+.|.. ++.++++|.||.|+|.....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 0011 13456777788888888899998889999988877777765 55689999999999987543
No 186
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.10 E-value=4.4e-10 Score=86.48 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=64.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR 316 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~ 316 (540)
+++|||+|++|+|+|..|++.|.+|+++++++.+.+ ....+.+.+++.||++++++.+.++..++++ +. |+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEe
Confidence 689999999999999999999999999999998874 4555666788899999999999999999876 66 7664
Q ss_pred E
Q 009224 317 K 317 (540)
Q Consensus 317 ~ 317 (540)
+
T Consensus 79 ~ 79 (80)
T PF00070_consen 79 D 79 (80)
T ss_dssp T
T ss_pred c
Confidence 3
No 187
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.4e-10 Score=114.71 Aligned_cols=97 Identities=21% Similarity=0.395 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
..|.......+++.++.||++||++|+.+.|.+++++..+.+.+.+..||++++.++|++|+|+++||+.+|..|.....
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~ 116 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPID 116 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceee
Confidence 44567778889999999999999999999999999999998889999999999999999999999999999988866677
Q ss_pred eeCCCCHHHHHHHHHhh
Q 009224 523 VPGVKMKKEYREFIEAN 539 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~ 539 (540)
+.|..+.+.+.+++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 117 YSGPRNAESLAEFLIKE 133 (383)
T ss_pred ccCcccHHHHHHHHHHh
Confidence 88888888898887653
No 188
>PRK08275 putative oxidoreductase; Provisional
Probab=99.09 E-value=4.4e-09 Score=111.84 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=44.2
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.|+|.+|... +|++||+||+|||+.........++..|+.|+..+.+++...
T Consensus 356 ~Ggi~~d~~~-~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~ 407 (554)
T PRK08275 356 ASGVWVNEKA-ETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGR 407 (554)
T ss_pred cCcEEECCCC-ccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3679999998 899999999999976445677889999999999999888643
No 189
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.08 E-value=8e-10 Score=93.06 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=66.2
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE---------------------CcCCHHHHHHcCCCccc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID---------------------IEEDPEIAEAAGIMGTP 509 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd---------------------~~~~~~~~~~~~i~~~P 509 (540)
..+++++++||++||++|+.+.|.++++.+++. +..+.+| .+.+.+++++|+|.++|
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 345899999999999999999999999988753 2222222 13456799999999999
Q ss_pred EEEEEeCCeEEEEeeCCCCHHHHHHH
Q 009224 510 CVQFFKNKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 510 t~~~~~~g~~~~~~~g~~~~~~~~~~ 535 (540)
+++++.+++++.+..|..+.++|.+.
T Consensus 96 ~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 96 AIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999655588899999999988764
No 190
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.08 E-value=7.2e-10 Score=88.60 Aligned_cols=67 Identities=22% Similarity=0.565 Sum_probs=55.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC-------------------------HHHHHHcCC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED-------------------------PEIAEAAGI 505 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~-------------------------~~~~~~~~i 505 (540)
+++++++||++||++|+...|.+.++.+++. +++.|+.|+.+++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999998 6899999998754 245677899
Q ss_pred CcccEEEEE-eCCeE
Q 009224 506 MGTPCVQFF-KNKEM 519 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~ 519 (540)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999 66653
No 191
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.07 E-value=7e-10 Score=94.56 Aligned_cols=71 Identities=17% Similarity=0.443 Sum_probs=58.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCH-------------------------HHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDP-------------------------EIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~-------------------------~~~~~~ 503 (540)
.+++++++||++||++|+...|.++++++++.+ ++.++.++.+.++ .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 468999999999999999999999999988864 5778888776542 456679
Q ss_pred CCCcccEEEEE-eCCeEEEE
Q 009224 504 GIMGTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~ 522 (540)
++.++|+++++ ++|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 99999999999 57877654
No 192
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.07 E-value=2.6e-09 Score=93.77 Aligned_cols=82 Identities=12% Similarity=0.252 Sum_probs=67.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-------------HHHHHHcCC--CcccEEEEE-eCCeEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-------------PEIAEAAGI--MGTPCVQFF-KNKEMI 520 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~i--~~~Pt~~~~-~~g~~~ 520 (540)
+++||++||++|+++.|.+++++++++ +.++-|+.++. ..+.+.|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999994 66666666532 235667885 699988888 888886
Q ss_pred -EEeeCCCCHHHHHHHHHhhC
Q 009224 521 -RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 -~~~~g~~~~~~~~~~i~~~l 540 (540)
..+.|..+.+++.+.|++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 57999999999999888753
No 193
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.06 E-value=8.1e-10 Score=94.13 Aligned_cols=71 Identities=23% Similarity=0.499 Sum_probs=59.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCC------------------------HHHHHHcC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEED------------------------PEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 504 (540)
.+++++|+||++||++|+.+.|.++++.+++.+ ++.++.++.+.+ ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 568999999999999999999999999888753 577777777644 35678899
Q ss_pred CCcccEEEEE-eCCeEEEE
Q 009224 505 IMGTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~ 522 (540)
+.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 58887654
No 194
>PRK06847 hypothetical protein; Provisional
Probab=99.04 E-value=4.4e-09 Score=106.94 Aligned_cols=118 Identities=26% Similarity=0.337 Sum_probs=83.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec-------------------------------cC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT-------------------------------TT- 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~-------------------------------~~- 140 (540)
+++||+|||||+||+++|..|++.|++|+|+|+.+.....|..+.. ..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 4679999999999999999999999999999986542111110000 00
Q ss_pred c-cccCC-------CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 141 E-VENFP-------GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 141 ~-~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
. ...++ .++ ..+...++.+.+.+.+.+.|++++.+ +++.++.+++.+.+.. ++.++.+|.||.|+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 0 00000 011 12345677888888888889999988 8888887777776665 66789999999999986
Q ss_pred CC
Q 009224 209 AK 210 (540)
Q Consensus 209 ~~ 210 (540)
+.
T Consensus 163 s~ 164 (375)
T PRK06847 163 SK 164 (375)
T ss_pred cc
Confidence 53
No 195
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.03 E-value=2.7e-09 Score=104.57 Aligned_cols=115 Identities=24% Similarity=0.342 Sum_probs=78.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC--ccee------------------------eccCc---cccC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP--GGQL------------------------MTTTE---VENF 145 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~--gg~~------------------------~~~~~---~~~~ 145 (540)
+||+|||||++|+++|..|++.|++|+|+|+....... +..+ ..... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 58999999999999999999999999999997652110 0000 00000 0000
Q ss_pred C-CCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCC
Q 009224 146 P-GFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATA 209 (540)
Q Consensus 146 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~ 209 (540)
+ .........++.+.+.+.+.+.|++++.+ +++.+..+++.+.+.. ++..+++|+||+|+|...
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 0 00011345677788888888899999877 7888877776655543 446799999999999753
No 196
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.03 E-value=6.1e-08 Score=102.69 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=76.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CC-cceeecc--Cc-c----------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VP-GGQLMTT--TE-V---------------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~-gg~~~~~--~~-~---------------------- 142 (540)
..+||+|||+|.|||+||..+++.|.+|+|+||....+ +. |+..... .. .
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 35899999999999999999999999999999976431 00 1111000 00 0
Q ss_pred --------------cc--CC-------------CCC--------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC
Q 009224 143 --------------EN--FP-------------GFP--------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKS 184 (540)
Q Consensus 143 --------------~~--~~-------------~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~ 184 (540)
.. +. +.. ....+..+...+.+.+++.+++++.+ .++.+..++
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~ 174 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence 00 00 000 01245667788888888889998877 778776543
Q ss_pred C----cEEEE-----E-CC-eEEEecEEEEccCCCC
Q 009224 185 N----PFTVK-----S-GE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 185 ~----~~~v~-----~-~~-~~~~~d~lviAtG~~~ 209 (540)
+ ++.+. . ++ ..+.++.||+|||...
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 3 23333 1 21 4688999999999754
No 197
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.03 E-value=2.7e-09 Score=101.39 Aligned_cols=115 Identities=28% Similarity=0.367 Sum_probs=76.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCccc-------cCCCCC--------CCCChH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEVE-------NFPGFP--------DGITGP 155 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~~-------~~~~~~--------~~~~~~ 155 (540)
.+||+||||||||++||+.|++.|++|+|+|+....+ +.|+.+....... ...+.+ ....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 4899999999999999999999999999999976521 1122111100000 000110 113456
Q ss_pred HHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC-cEE---EEE----------CCeEEEecEEEEccCCC
Q 009224 156 DLMDRMRRQAERWGAELHQE-DVEFIDVKSN-PFT---VKS----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~-~~~---v~~----------~~~~~~~d~lviAtG~~ 208 (540)
++...+.+...+.|++++.+ +|.++..+++ .+. +.. +...++++.||+|||..
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 77788888888899999887 7777765443 221 110 22578999999999964
No 198
>PRK10015 oxidoreductase; Provisional
Probab=99.02 E-value=3.3e-09 Score=109.17 Aligned_cols=117 Identities=28% Similarity=0.433 Sum_probs=78.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC---CcceeeccCccccCCC----------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV---PGGQLMTTTEVENFPG---------------------- 147 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~---~gg~~~~~~~~~~~~~---------------------- 147 (540)
..+||+||||||||++||+.|++.|++|+|+||.+..+. .|+.+.........|+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 358999999999999999999999999999999765321 1222211100000000
Q ss_pred -------------CC----CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCC
Q 009224 148 -------------FP----DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 148 -------------~~----~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~ 208 (540)
.+ .......+-..+.+.+++.|++++.+ +|+.+..+++.+. +..++..+.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 00 01122344445677778889999987 8888876665554 44466789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 3
No 199
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.02 E-value=1.3e-09 Score=122.99 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=76.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEC---------------------------cCCHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDI---------------------------EEDPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~ 503 (540)
.+++++|+||++||++|+...|.++++.++|.+ ++.++.|.. +.+.++.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 478999999999999999999999999999975 477777642 2234577889
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|.++|+++++ ++|+++.++.|....+++.++|++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 99999999999 7999999999999999999999875
No 200
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.01 E-value=1.1e-09 Score=90.63 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCC-HHHHHHcCCCcccEEEEE-eC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEED-PEIAEAAGIMGTPCVQFF-KN 516 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~-~~ 516 (540)
-++-.+...+.+++++++|+++||++|+.+...+ .++.+....++..+.++.+.. .++. ..+ .++||++|+ .+
T Consensus 12 ~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~ 89 (130)
T cd02960 12 YEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPS 89 (130)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCC
Confidence 3444566788899999999999999999999876 445555544555556666522 1221 233 689999999 88
Q ss_pred CeEEEEeeCCC
Q 009224 517 KEMIRTVPGVK 527 (540)
Q Consensus 517 g~~~~~~~g~~ 527 (540)
|+++.++.|+.
T Consensus 90 g~vi~~i~Gy~ 100 (130)
T cd02960 90 LTVRADITGRY 100 (130)
T ss_pred CCCcccccccc
Confidence 88888888874
No 201
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.00 E-value=3.5e-08 Score=97.93 Aligned_cols=112 Identities=23% Similarity=0.310 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----C-CcceeeccCcc----------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----V-PGGQLMTTTEV---------------------------- 142 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~-~gg~~~~~~~~---------------------------- 142 (540)
||+|||+|.|||++|+.|.+. ++|+|+.|..... | .||.-.....-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 9999999966542 0 11111100000
Q ss_pred -----------------ccCCC----------------CCCCCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCC--
Q 009224 143 -----------------ENFPG----------------FPDGITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSN-- 185 (540)
Q Consensus 143 -----------------~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~-- 185 (540)
.+..+ .....++..++..+...+++ .+|+++.+ .+..+-.+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 00000 01135677888888888776 68999887 6666655555
Q ss_pred --cEEEEEC---CeEEEecEEEEccCCC
Q 009224 186 --PFTVKSG---ERKVKCHSIVFATGAT 208 (540)
Q Consensus 186 --~~~v~~~---~~~~~~d~lviAtG~~ 208 (540)
++.+... ...+.++.+|+|||.-
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 3344322 2567889999999974
No 202
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.99 E-value=8.6e-08 Score=99.93 Aligned_cols=115 Identities=25% Similarity=0.306 Sum_probs=74.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-CCC------Cc----ceeecc-Ccc---------------ccC--
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV------PG----GQLMTT-TEV---------------ENF-- 145 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-~~~------~g----g~~~~~-~~~---------------~~~-- 145 (540)
+||+|||||+||+.+|..+++.|.+|+|+|+... .+. .| |.+... ... ..+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 5899999999999999999999999999998532 110 11 111100 000 000
Q ss_pred ---CCC--C-CCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEee-C-CcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 146 ---PGF--P-DGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVK-S-NPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 146 ---~~~--~-~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~-~-~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
|.. + .......+...+.+.+++. ++.++.++|+.+..+ + ..+.|.. ++..+.++.||+|||...
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 110 0 1234455666777777777 789988888887554 3 3333443 556899999999999764
No 203
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.99 E-value=1.6e-08 Score=108.37 Aligned_cols=44 Identities=36% Similarity=0.502 Sum_probs=37.2
Q ss_pred CCccccCCCceEEccccCCC-cchhhhhhhchHHHHHHHHHHHHhc
Q 009224 360 EGTAKTSVEGVFAAGDVQDH-EWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.++ +|++|||||+|||++. ..+....+..+|+.|+.++..++..
T Consensus 389 ~~~-~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 YNR-MTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccc-ccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 777 8999999999999752 3466778888999999999998865
No 204
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.98 E-value=1.1e-08 Score=114.50 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|+|.+|... +|++||+||+|||+.........++..|+.|+.++..++..
T Consensus 361 ~GGi~vd~~~-~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 361 ASGVWVDEHA-RTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred cceEEecCCC-cccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHHHHhc
Confidence 5889999998 89999999999998766678889999999999999988754
No 205
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.98 E-value=4e-09 Score=108.59 Aligned_cols=117 Identities=24% Similarity=0.393 Sum_probs=78.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC---CcceeeccCc------------cc--------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV---PGGQLMTTTE------------VE-------------- 143 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~---~gg~~~~~~~------------~~-------------- 143 (540)
..+||+||||||||++||+.|++.|++|+|+||....+. .||.+..... ..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 358999999999999999999999999999999765221 1222211000 00
Q ss_pred -----cCCC----CC----CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE-EEEECCeEEEecEEEEccCCC
Q 009224 144 -----NFPG----FP----DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF-TVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 144 -----~~~~----~~----~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lviAtG~~ 208 (540)
.++. .+ ......++-..+.+.+++.|++++.+ +|+.+..+++.+ .+..++.++.+|.||.|+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 0000 00 01223445566777788889999988 888887666554 344466789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 4
No 206
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.8e-08 Score=107.22 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=40.6
Q ss_pred CCCEEeCCCcccc-CCCceEEccccCC-Ccc-------hhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKT-SVEGVFAAGDVQD-HEW-------RQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t-~~~~iya~GD~~~-~~~-------~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +| ++||+||+|+|++ ... ..+..++..|+.|+.++.+++..
T Consensus 346 ~GGi~vd~~~-~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 346 MGGIDVDIDG-RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred cCCeEECCCC-CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 5779999888 66 4999999999975 211 25678889999999999988754
No 207
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.97 E-value=1e-08 Score=109.72 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCCEEeCCCccc----cCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 352 SSGYVIVEEGTAK----TSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 352 ~~g~i~vd~~~~~----t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
-.|.+.+|... + |.+||+||+|+|++ .. -.....|+..|+.|+.++..++..
T Consensus 341 t~GGi~id~~~-~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 404 (566)
T TIGR01812 341 SMGGIPTDYTG-RVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAK 404 (566)
T ss_pred cCCCeEECcCc-ccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 35778898887 6 89999999999975 21 145678889999999999988754
No 208
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.97 E-value=7.7e-09 Score=97.98 Aligned_cols=115 Identities=26% Similarity=0.362 Sum_probs=76.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCc-------cccCCCCCC--------CCChH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTE-------VENFPGFPD--------GITGP 155 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~-------~~~~~~~~~--------~~~~~ 155 (540)
.+||+||||||||++||+.|++.|++|+|+||....+ +.++.+..... .....+++. .....
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 5899999999999999999999999999999987621 11222111000 000011111 12345
Q ss_pred HHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc--E---EEEE----------CCeEEEecEEEEccCCC
Q 009224 156 DLMDRMRRQAERWGAELHQE-DVEFIDVKSNP--F---TVKS----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~--~---~v~~----------~~~~~~~d~lviAtG~~ 208 (540)
++...+.....+.|++++.+ .+.++..+++. + .+.. +...++++.||.|||..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 67788888888899999887 78887765542 1 1110 12478999999999953
No 209
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.96 E-value=2.2e-07 Score=97.44 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeeccC---c---------------c----------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTTT---E---------------V---------- 142 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~~---~---------------~---------- 142 (540)
+||+|||||.|||+||..+++.|. |+|+||....+ +.+|.+.... . .
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 699999999999999999999997 99999975421 1111110000 0 0
Q ss_pred ------------ccCC---------------CCC-------CCCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCc
Q 009224 143 ------------ENFP---------------GFP-------DGITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNP 186 (540)
Q Consensus 143 ------------~~~~---------------~~~-------~~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~ 186 (540)
...+ +.. ....+..+...+.+.+++ .+++++.+ .++.+..+++.
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~ 161 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETGR 161 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCE
Confidence 0000 000 011345677788887877 68999887 77877655543
Q ss_pred EE---EEECC--eEEEecEEEEccCCCCC
Q 009224 187 FT---VKSGE--RKVKCHSIVFATGATAK 210 (540)
Q Consensus 187 ~~---v~~~~--~~~~~d~lviAtG~~~~ 210 (540)
+. +...+ ..+.++.||+|||....
T Consensus 162 v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 162 VVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred EEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 32 22222 46889999999998643
No 210
>smart00594 UAS UAS domain.
Probab=98.96 E-value=8.5e-09 Score=86.24 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEE-e
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFF-K 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~-~ 515 (540)
-.+-.+...+.+|+++|+|+++||++|+.+...+ .++.+.++.++.++.+|++. ..+++.+|++.++|+++++ .
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~ 95 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDP 95 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEec
Confidence 4444566778889999999999999999998865 56666666678888888764 4578999999999999999 5
Q ss_pred CC-----eEEEEeeCCCCHHHHHHHHH
Q 009224 516 NK-----EMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 516 ~g-----~~~~~~~g~~~~~~~~~~i~ 537 (540)
+| +.+.++.|..+.++|.++++
T Consensus 96 ~~g~~~~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 96 RTGQRVIEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred CCCceeEEEeccccCCCCHHHHHHhhC
Confidence 55 35678899999999988763
No 211
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.96 E-value=5.9e-09 Score=106.46 Aligned_cols=117 Identities=29% Similarity=0.376 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc---ceeeccCccccCCCC---------------C-----
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG---GQLMTTTEVENFPGF---------------P----- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g---g~~~~~~~~~~~~~~---------------~----- 149 (540)
.++||+||||||||++||+.|++.|++|+|+||.+..+.+. +.+.......-.+.+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 35899999999999999999999999999999976633211 111110000000000 0
Q ss_pred -------C-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCC
Q 009224 150 -------D-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATA 209 (540)
Q Consensus 150 -------~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~ 209 (540)
. -+....+-+.+....++.|++++.+ ++..+..+++.+.+.. +..++++++||.|+|...
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0 1123456667788889999999997 7888887776665543 336899999999999764
No 212
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.95 E-value=7.6e-09 Score=108.73 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||+|.||++||..+++ |.+|+|+||...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4799999999999999999976 899999999664
No 213
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.95 E-value=1.4e-08 Score=103.59 Aligned_cols=115 Identities=24% Similarity=0.327 Sum_probs=77.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CCCCCCcce------------------------eeccCcc---ccCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQ------------------------LMTTTEV---ENFP 146 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~~~~~gg~------------------------~~~~~~~---~~~~ 146 (540)
+||+||||||||+++|+.|++.|++|+|+|+. .....-|+. +..+... ...+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 68999999999999999999999999999986 211000000 0000000 0001
Q ss_pred CCCC---CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC---------CeEEEecEEEEccCCCC
Q 009224 147 GFPD---GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG---------ERKVKCHSIVFATGATA 209 (540)
Q Consensus 147 ~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~---------~~~~~~d~lviAtG~~~ 209 (540)
.... ......+-+.+.+.+.+.|++++.++|+.+..+++.+.+... ..++++|.||.|+|...
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 0001 134556667777888888999988888888877777766432 24789999999999754
No 214
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.95 E-value=4.8e-09 Score=86.80 Aligned_cols=73 Identities=25% Similarity=0.534 Sum_probs=65.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC-----------------------HHHHHHcCCCcc
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED-----------------------PEIAEAAGIMGT 508 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~-----------------------~~~~~~~~i~~~ 508 (540)
++++++.||++||++|+...+.+.++.+++. .++.++.|+++.+ .++.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6899999999999999999999999999996 4699999999886 778999999999
Q ss_pred cEEEEE-eCCeEEEEeeC
Q 009224 509 PCVQFF-KNKEMIRTVPG 525 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g 525 (540)
|+++++ ++|+.+.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 999998 68888887765
No 215
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=1.5e-08 Score=108.30 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCCEEeCCCccccC------CCceEEccccCCC-c-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTS------VEGVFAAGDVQDH-E-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~------~~~iya~GD~~~~-~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|. +||+||+|+|++. . -.....++..|+.|+.++++++..
T Consensus 352 ~GGi~vd~~~-~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~ 416 (577)
T PRK06069 352 MGGIHTDVYG-RVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALK 416 (577)
T ss_pred CCCceECCCC-cCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778899888 777 9999999999752 1 134577888999999999988754
No 216
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.93 E-value=1.3e-08 Score=103.92 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=78.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC------cceee---c----cCccc-----cCCCC------CC-
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP------GGQLM---T----TTEVE-----NFPGF------PD- 150 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~------gg~~~---~----~~~~~-----~~~~~------~~- 150 (540)
||+|||||+||+++|..|++.|++|+|+|+.+..+.+ +..+. . ..... ..+.. +.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999987542100 00000 0 00000 00100 01
Q ss_pred CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEee-CCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 151 GITGPDLMDRMRRQAERWGAELHQEDVEFIDVK-SNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~-~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
.+...++.+.+.+.+.+.|++++.++|+.+..+ ++.+.+.. ++..++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 144567778888888888999988888888766 55566655 445899999999999876
No 217
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=1.5e-08 Score=108.20 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~ 128 (540)
.+||+|||||.||++||..|++. |.+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 36999999999999999999987 489999999764
No 218
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.92 E-value=3.4e-07 Score=97.78 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 352 ~~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
..|.|.+|... +|.+||+||+|+|++.. -..+..++..|+.|+.+++.++..
T Consensus 357 t~GGi~vd~~~-~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 357 TMGGIETDQNC-ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred eCCCEEECCCC-ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 35789999988 89999999999997421 135677888999999999988764
No 219
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.91 E-value=9.3e-09 Score=86.87 Aligned_cols=75 Identities=12% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc---------------------------CCHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE---------------------------EDPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------------~~~~~~~~~ 503 (540)
.+++++++||+.||++|+...|.++++.+++.+ ++.++.|+.+ .+..+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 568999999999999999999999999999974 6888887542 122456778
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGV 526 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~ 526 (540)
++.++|+++++ ++|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 789998888774
No 220
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.90 E-value=1.6e-08 Score=93.69 Aligned_cols=89 Identities=9% Similarity=0.136 Sum_probs=70.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHH-HHcCC-------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIA-EAAGI------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~-~~~~i------------- 505 (540)
.+++++|+||++||++|....|.++++.+++.+ ++.++.|+++. + .+.+ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 468999999999999999999999999999974 58899888741 1 1222 22211
Q ss_pred ---------------------CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 ---------------------MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 ---------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
...|+.+++ ++|+++.++.|..+.+++++.|+++|
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 224777777 89999999999999999999998875
No 221
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.89 E-value=2.5e-08 Score=102.87 Aligned_cols=119 Identities=24% Similarity=0.371 Sum_probs=76.6
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceee--------cc----------------Ccc-cc
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLM--------TT----------------TEV-EN 144 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~--------~~----------------~~~-~~ 144 (540)
....+||+||||||||++||..|++.|++|+|+|+......+ |+.+. .. ... ..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 445689999999999999999999999999999986432110 11100 00 000 00
Q ss_pred CCC-C-C-CC---CChHHHHHHHHHHHHHhCCEEEEeeEEEEEee---CCcEEEEE----------CCeEEEecEEEEcc
Q 009224 145 FPG-F-P-DG---ITGPDLMDRMRRQAERWGAELHQEDVEFIDVK---SNPFTVKS----------GERKVKCHSIVFAT 205 (540)
Q Consensus 145 ~~~-~-~-~~---~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~---~~~~~v~~----------~~~~~~~d~lviAt 205 (540)
+.. . + .+ .....+-..+.+...+.|++++.++++.++.+ ++.+.+.. +..++++|.||-|.
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 000 0 0 01 34455666777788888999988887777642 23344432 12479999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|...
T Consensus 196 G~~S 199 (450)
T PLN00093 196 GANS 199 (450)
T ss_pred Ccch
Confidence 9754
No 222
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.89 E-value=9.7e-09 Score=85.12 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=54.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc---C-----------------CHHHHHHcCCCcccEE
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE---E-----------------DPEIAEAAGIMGTPCV 511 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~-----------------~~~~~~~~~i~~~Pt~ 511 (540)
.+++++++||++||++|+...|.++++.+++.+++.++.+.-+ + +.++.+.|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 3689999999999999999999999999888766777755211 1 1244566788888988
Q ss_pred EEE-eCCeEEEE
Q 009224 512 QFF-KNKEMIRT 522 (540)
Q Consensus 512 ~~~-~~g~~~~~ 522 (540)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 888 57876543
No 223
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.89 E-value=2e-08 Score=102.71 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=80.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccce---eecc----------------C---cc----
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQ---LMTT----------------T---EV---- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~---~~~~----------------~---~~---- 142 (540)
..+||+|||||++|+++|+.|+++|++|+|+|+.+.... ++.+ +... . ..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 458999999999999999999999999999999653110 0000 0000 0 00
Q ss_pred -ccC-----CCCC----------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEc
Q 009224 143 -ENF-----PGFP----------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFA 204 (540)
Q Consensus 143 -~~~-----~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviA 204 (540)
... ..+. .......+.+.+.+.+++.|++++.+ +|+.+..+++.+++.. ++.++.+|.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A 164 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAA 164 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEe
Confidence 000 0000 00123556667777788889999887 8888887777777765 4568999999999
Q ss_pred cCCCCC
Q 009224 205 TGATAK 210 (540)
Q Consensus 205 tG~~~~ 210 (540)
+|....
T Consensus 165 dG~~S~ 170 (392)
T PRK08773 165 DGAAST 170 (392)
T ss_pred cCCCch
Confidence 998753
No 224
>PRK06834 hypothetical protein; Provisional
Probab=98.89 E-value=2.9e-08 Score=103.78 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcc---eeecc-----------------------Ccc----c
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG---QLMTT-----------------------TEV----E 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg---~~~~~-----------------------~~~----~ 143 (540)
.+||+||||||+|+++|..|++.|++|+|+|+.......+. .+... ... .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 47999999999999999999999999999998654210000 00000 000 0
Q ss_pred cCCCCC------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 144 NFPGFP------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 144 ~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+..++ .......+.+.+.+.+++.|++++.+ +++++..+++.+.+.. ++.++++|+||.|.|.+...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000000 11223455666777778889999887 8899988888777765 45689999999999987543
No 225
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=2e-08 Score=88.77 Aligned_cols=113 Identities=30% Similarity=0.450 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCccc-------cCCCCC-----C---CCChHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEVE-------NFPGFP-----D---GITGPD 156 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~~-------~~~~~~-----~---~~~~~~ 156 (540)
-||+||||||+||+||++|++.|++|+++|++...+ |.||+++..--.. .-.+++ + -....+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 699999999999999999999999999999976532 4455544321110 000111 1 123455
Q ss_pred HHHHHHHHHHHhCCEEEEe-eEEEEEeeCC-cE---EEE----------ECCeEEEecEEEEccCC
Q 009224 157 LMDRMRRQAERWGAELHQE-DVEFIDVKSN-PF---TVK----------SGERKVKCHSIVFATGA 207 (540)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~-~~---~v~----------~~~~~~~~d~lviAtG~ 207 (540)
+...+....-+.|.+++.+ .|.++-..++ ++ .+. .+-..+++++||=|||-
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 6667777777788888887 6666544443 21 111 13356788888888884
No 226
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.88 E-value=1.8e-09 Score=115.36 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=69.2
Q ss_pred CCCEEEEEeCCc--cHHHHHHHHHhcCCeEEEEEecccccc-------------------cHHHHHHHhcCCCeEEEeCc
Q 009224 239 KGQVLAVVGGGD--TATEEAIYLTKFARHVHLLVRREQLRA-------------------SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 239 ~~k~v~VvG~G~--~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------~~~~~~~~l~~~gv~~~~~~ 297 (540)
..+++.|+|++. ++.+++..+...+..++++.+...+.. ....+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999988 788999998888877766544332221 11112333567899999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEcc-EEEEecccccC
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAK-GLFYGIGHSPN 340 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~ 340 (540)
.++++..+ ++++.++.+.+ .+....+.++ .||+|+|.-++
T Consensus 236 ~v~~l~~~-~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 236 PARELLTE-GGRVVGARVID--AGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEEEEEee-CCEEEEEEEEc--CCceEEEEeCCEEEEcCCCccc
Confidence 99999865 46788887764 1233457786 79999997664
No 227
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=7.3e-08 Score=103.77 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
..+||+|||||.|||+||..+++.|.+|+|+||..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35799999999999999999999999999999854
No 228
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.7e-09 Score=105.76 Aligned_cols=98 Identities=23% Similarity=0.382 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.......+..+++.||+|||++|+.+.|.+++++..+. ..+.+..+|++....++++++|..+||+++|.+|..
T Consensus 151 ~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 151 KDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred ccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc
Confidence 455677778889999999999999999999999999999885 579999999999999999999999999999988877
Q ss_pred -EEEeeCCCCHHHHHHHHHhh
Q 009224 520 -IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 -~~~~~g~~~~~~~~~~i~~~ 539 (540)
...+.+.++.+.+.+|+++.
T Consensus 231 ~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 231 DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred ccccccccccHHHHHHHHHhh
Confidence 77888999999999999864
No 229
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.87 E-value=9.5e-07 Score=94.64 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcc-------hhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEW-------RQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~-------~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|++||+||+|+|++... .....+...|+.|+.+++.++.+
T Consensus 370 ~gG~~~d~~~-~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~ 427 (603)
T TIGR01811 370 MGGLWVDYDQ-MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYLG 427 (603)
T ss_pred CCCeeECCCC-cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778888888 899999999999975321 45677888999999999887643
No 230
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.86 E-value=2.7e-08 Score=101.69 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=78.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcc------eeecc--------Ccc-c-----cC-C------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG------QLMTT--------TEV-E-----NF-P------ 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg------~~~~~--------~~~-~-----~~-~------ 146 (540)
.+||+|||||+||+++|+.|++.|++|+|+|+.......+. ..... ... . .. +
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999998765211000 00000 000 0 00 0
Q ss_pred ---------------CCCC---CCChHHHHHHHHHHHHHhC-CEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccC
Q 009224 147 ---------------GFPD---GITGPDLMDRMRRQAERWG-AELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 147 ---------------~~~~---~~~~~~~~~~~~~~~~~~~-v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG 206 (540)
..+. .....++.+.+.+.+++.+ ++++..+++.+..+++.+.+.. ++.++++|.||.|.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG 164 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGADG 164 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeCC
Confidence 0010 1224566777777788877 8888558888887777777765 555799999999999
Q ss_pred CCC
Q 009224 207 ATA 209 (540)
Q Consensus 207 ~~~ 209 (540)
...
T Consensus 165 ~~S 167 (388)
T PRK07608 165 AHS 167 (388)
T ss_pred CCc
Confidence 864
No 231
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.86 E-value=1.5e-08 Score=88.15 Aligned_cols=78 Identities=22% Similarity=0.455 Sum_probs=65.6
Q ss_pred hCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC---------------------HHHHHHcCCC-
Q 009224 451 ESPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED---------------------PEIAEAAGIM- 506 (540)
Q Consensus 451 ~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------~~~~~~~~i~- 506 (540)
-.++++++.||+. |||+|+...|.++++.+++.+ ++.++.+..+.+ .++.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4578899999999 999999999999999998654 588888877543 3567778988
Q ss_pred --------cccEEEEE-eCCeEEEEeeCCCC
Q 009224 507 --------GTPCVQFF-KNKEMIRTVPGVKM 528 (540)
Q Consensus 507 --------~~Pt~~~~-~~g~~~~~~~g~~~ 528 (540)
++|+++++ ++|+++.+..|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99987777 88999999988876
No 232
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.86 E-value=3.3e-08 Score=100.90 Aligned_cols=116 Identities=23% Similarity=0.381 Sum_probs=73.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceee------------------------ccCcc-ccC---
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLM------------------------TTTEV-ENF--- 145 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~------------------------~~~~~-~~~--- 145 (540)
+||+||||||||++||..|++.|++|+|+|+....+.+ ++.+. .+... ..+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 48999999999999999999999999999986431100 11100 00000 000
Q ss_pred -C--CCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEe---eCCcEEEEE----------CCeEEEecEEEEccCCCC
Q 009224 146 -P--GFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDV---KSNPFTVKS----------GERKVKCHSIVFATGATA 209 (540)
Q Consensus 146 -~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~---~~~~~~v~~----------~~~~~~~d~lviAtG~~~ 209 (540)
+ ++........+-..+.+...+.|++++.+++..+.. .++.+.+.. ....++++.||.|+|...
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 0 000013445556667778888899998888777642 223344431 124789999999999865
Q ss_pred C
Q 009224 210 K 210 (540)
Q Consensus 210 ~ 210 (540)
.
T Consensus 161 ~ 161 (398)
T TIGR02028 161 R 161 (398)
T ss_pred H
Confidence 3
No 233
>PRK06184 hypothetical protein; Provisional
Probab=98.86 E-value=3.9e-08 Score=103.79 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=78.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccc------------------------------eeecc-Cc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGG------------------------------QLMTT-TE 141 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg------------------------------~~~~~-~~ 141 (540)
.+||+||||||+|+++|..|++.|++|+|+||.+.... +.+ .+... ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999653210 000 00000 00
Q ss_pred c------c---cCCC--CC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE----CCeEEEecEEEE
Q 009224 142 V------E---NFPG--FP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS----GERKVKCHSIVF 203 (540)
Q Consensus 142 ~------~---~~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvi 203 (540)
. . ..+. ++ ..+....+.+.+.+.+.+.|++++.+ ++++++.+++.+++.. ++.++++|+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence 0 0 0000 00 01223445566777778889999888 8999988777776653 446799999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|.|.+.
T Consensus 163 ADG~~S 168 (502)
T PRK06184 163 ADGGRS 168 (502)
T ss_pred CCCCch
Confidence 999864
No 234
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=1.2e-09 Score=108.91 Aligned_cols=98 Identities=18% Similarity=0.364 Sum_probs=79.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECc--CCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
+.++|+..+..+++-.+|.||++||++|+.+.|.|+++++.+.+ -+.++.|||. +|..+|++|+|+++|++.+|+
T Consensus 45 d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~ 124 (606)
T KOG1731|consen 45 DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFP 124 (606)
T ss_pred ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecC
Confidence 47788899988888999999999999999999999999998863 5788899996 577899999999999999995
Q ss_pred CCeEE----EEeeCCCCHHHHHHHHHh
Q 009224 516 NKEMI----RTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 516 ~g~~~----~~~~g~~~~~~~~~~i~~ 538 (540)
.+..- ..+.|.....++.+++.+
T Consensus 125 ~~~~~~~~G~~~~~~~~~~ei~~~l~~ 151 (606)
T KOG1731|consen 125 PDSQNKTDGSDVSGPVIPSEIRDQLIR 151 (606)
T ss_pred CccccCcCCCcccCCcchhhHHHHHHH
Confidence 44111 234555556666666654
No 235
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.84 E-value=3e-08 Score=101.37 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=77.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-----cce-----------------e---ec---cC--cc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-----GGQ-----------------L---MT---TT--EV 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-----gg~-----------------~---~~---~~--~~ 142 (540)
..+||+|||||++|+++|..|++.|++|+|+|+....... +.. + .. .. ..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 3589999999999999999999999999999986421100 000 0 00 00 00
Q ss_pred c---c-------------CCCCCCCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEE
Q 009224 143 E---N-------------FPGFPDGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVF 203 (540)
Q Consensus 143 ~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvi 203 (540)
. . .+..........+.+.+.+.+++. +++++.+ +++.+..+++.+.+.. ++.++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIG 163 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence 0 0 000000122345556666666666 8998876 8888887777777665 556899999999
Q ss_pred ccCCCCC
Q 009224 204 ATGATAK 210 (540)
Q Consensus 204 AtG~~~~ 210 (540)
|.|....
T Consensus 164 AdG~~S~ 170 (391)
T PRK08020 164 ADGANSQ 170 (391)
T ss_pred eCCCCch
Confidence 9998653
No 236
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.84 E-value=7.4e-07 Score=94.47 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCCEEeCCCccccCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHHh
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
.|.|.+|... +|++||+||+|+|+. .. -..+..++..|+.|+.++..+..
T Consensus 353 ~GGi~vd~~~-~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 353 CGGVMVDLHG-RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred cCCeeECCCC-ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 4778999888 899999999999973 21 14567778889999999987653
No 237
>PRK07190 hypothetical protein; Provisional
Probab=98.84 E-value=5e-08 Score=101.88 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=78.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcce--------------------------eecc-----Cc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQ--------------------------LMTT-----TE 141 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~--------------------------~~~~-----~~ 141 (540)
..+||+||||||+|+++|..|++.|.+|+|+||.+.....|.. +... ..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 3479999999999999999999999999999997542100000 0000 00
Q ss_pred c--------ccCCCC--C--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 142 V--------ENFPGF--P--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 142 ~--------~~~~~~--~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
. ...++. + .......+...+.+.+++.|++++.+ +|+++..+++.+.+.. +++++++++||.|.|.
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCC
Confidence 0 000000 0 01122344555666778889999988 8899988777766544 5568999999999998
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
+.
T Consensus 164 ~S 165 (487)
T PRK07190 164 RS 165 (487)
T ss_pred CH
Confidence 64
No 238
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.84 E-value=2.5e-08 Score=101.75 Aligned_cols=112 Identities=29% Similarity=0.482 Sum_probs=79.2
Q ss_pred EEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-----CcceeeccCc--c----ccCCC-------------------
Q 009224 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-----PGGQLMTTTE--V----ENFPG------------------- 147 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-----~gg~~~~~~~--~----~~~~~------------------- 147 (540)
+|||||+||++||..|++.|++|+|+|+.+..+. .+|....... . ..++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999775220 1122211110 0 00100
Q ss_pred -----------------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 148 -----------------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 148 -----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+|......++.+.+.+.+++.+++++.+ .|+.+..+++.+.+..++..+.+|+||+|+|...
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCcc
Confidence 1111234567778888888899999887 7888877777787776777899999999999743
No 239
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.84 E-value=2.9e-08 Score=102.02 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=77.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---------CCC-cceeeccC-----------ccc---cCC---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---------GVP-GGQLMTTT-----------EVE---NFP--- 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---------~~~-gg~~~~~~-----------~~~---~~~--- 146 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. ..+ +..+.... ... ..+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 379999999999999999999999999999987520 000 00000000 000 000
Q ss_pred -------C-----C-------C---CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEE
Q 009224 147 -------G-----F-------P---DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 147 -------~-----~-------~---~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lv 202 (540)
+ + + .......+.+.+.+.+++.+++++.+ ++++++.+++.+.+.. ++.++.+|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 161 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVV 161 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 0 0 0 00122345556666677789999887 8888888777777765 55689999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|.|...
T Consensus 162 gAdG~~S 168 (405)
T PRK05714 162 AADGANS 168 (405)
T ss_pred EecCCCc
Confidence 9999764
No 240
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.84 E-value=3.2e-08 Score=101.63 Aligned_cols=117 Identities=26% Similarity=0.403 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCC---Ccceeecc-----------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGV---PGGQLMTT----------------------------- 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~---~gg~~~~~----------------------------- 139 (540)
++||+||||||+|+++|..|++.| ++|+|+|+.+.... ..+....+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 479999999999999999999995 99999999653110 00000000
Q ss_pred Cc--------cccC-----CCCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEE
Q 009224 140 TE--------VENF-----PGFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 140 ~~--------~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lv 202 (540)
.. ...+ ++.+ ..+...++.+.+.+.+.+.|++++.+ +|+.++.+++.+.+.. ++..+.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEE
Confidence 00 0000 0001 02344667778888888889999877 8889988787777765 56679999999
Q ss_pred EccCCCCC
Q 009224 203 FATGATAK 210 (540)
Q Consensus 203 iAtG~~~~ 210 (540)
.|.|....
T Consensus 161 ~AdG~~S~ 168 (403)
T PRK07333 161 AADGARSK 168 (403)
T ss_pred EcCCCChH
Confidence 99998654
No 241
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.83 E-value=5.4e-08 Score=99.20 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=94.2
Q ss_pred cceeeccCCCCCChhh--hhhhhcccccccCcccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 60 RSLRVNSTSGPHHLPA--LRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 60 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
+...+++++.|..++. +........+.......-+++++|||||+.|+..|..+++.|.+|||+|+.+. +.
T Consensus 137 ~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~-------iL 209 (454)
T COG1249 137 DNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR-------IL 209 (454)
T ss_pred CEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-------CC
Confidence 5566677776654442 22211111111112224567899999999999999999999999999997654 21
Q ss_pred ccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCe--EEEecEEEEccCCCCCCCC
Q 009224 138 TTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GER--KVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~~~~ 213 (540)
| ...+++.+.+.+.+++.+++++++ .++.++..++.+.+.. ++. .+++|+|++|+|.+|+..+
T Consensus 210 --------p-----~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 210 --------P-----GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred --------C-----cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 1 234688999999999988999988 6777766655455544 333 6889999999999988764
Q ss_pred C
Q 009224 214 L 214 (540)
Q Consensus 214 i 214 (540)
+
T Consensus 277 L 277 (454)
T COG1249 277 L 277 (454)
T ss_pred C
Confidence 3
No 242
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.83 E-value=4.4e-08 Score=105.61 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=40.8
Q ss_pred CCCEEeCCCcccc-CCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhcC
Q 009224 353 SGYVIVEEGTAKT-SVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 353 ~g~i~vd~~~~~t-~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.|.|.+|... +| .+||+||+|+|++.. -..+..++..|+.|+.+++.++...
T Consensus 372 mGGi~vd~~~-~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~ 432 (657)
T PRK08626 372 MGGIRTNPTG-ESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGN 432 (657)
T ss_pred cCCceECCCC-CCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4779999888 66 699999999997511 1345778889999999999887543
No 243
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.83 E-value=3.2e-08 Score=99.73 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|++++.+++.++ |.++...+.+|+||+|+|..
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAW 202 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGG
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEeccccc
Confidence 5677888888889999999999 9999999999988 88877779999999999975
No 244
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.82 E-value=2.3e-08 Score=98.91 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEc-CCCCCC---------------------CCcceeeccCccc----------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFE-GYQAGG---------------------VPGGQLMTTTEVE---------- 143 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie-~~~~~~---------------------~~gg~~~~~~~~~---------- 143 (540)
||+|||||.||++||+.+++.|++|+|+. +.+..+ ..||.+....+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 322211 0111111111000
Q ss_pred -cCCCCCC--CCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCC
Q 009224 144 -NFPGFPD--GITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 144 -~~~~~~~--~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~ 207 (540)
..+.... ......+...+++.++. .+++++.++|+++..+++.+. |.+ ++..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0111111 23455667777777776 589999899999988776542 333 7788999999999997
No 245
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.82 E-value=2.1e-08 Score=91.41 Aligned_cols=89 Identities=8% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHHcCC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEAAGI-------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~~~i-------------- 505 (540)
.++++++.||++||++|+...|.++++.+++.+ ++.++.|++++ ++ +.++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 468999999999999999999999999999975 58999998742 22 23344333
Q ss_pred ----------------------Cccc---EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 ----------------------MGTP---CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 ----------------------~~~P---t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
..+| +.+|+ ++|+++.++.|..+.+++.+.|+++|
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1122 34444 89999999999988888888887653
No 246
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.81 E-value=1.1e-07 Score=98.60 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=80.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~-------~l--------~~-----~~~~~~~~~~~~l~~~GI~i~ 216 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST-------IL--------PR-----EEPSVAALAKQYMEEDGITFL 216 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc-------cC--------CC-----CCHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999999999999997543 11 11 124566677788899999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +++.++.+++.+.+..++.++.+|.||+|+|..|+..
T Consensus 217 ~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 217 LNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred cCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 87 7888887666676666777899999999999998754
No 247
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.80 E-value=4.9e-08 Score=98.81 Aligned_cols=115 Identities=21% Similarity=0.307 Sum_probs=79.1
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCceEEEcCCCCCCCCcce-eeccCc----c-----ccCC--------------CCC
Q 009224 96 NVVIIGSGPAGYTAAIYA--ARANLKPVVFEGYQAGGVPGGQ-LMTTTE----V-----ENFP--------------GFP 149 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l--~~~g~~v~lie~~~~~~~~gg~-~~~~~~----~-----~~~~--------------~~~ 149 (540)
||+|||||+||+++|.+| ++.|.+|+|||+.....++... |..... . +.+. ..+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7789999999986653211111 110000 0 0000 001
Q ss_pred C-CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCC
Q 009224 150 D-GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
. .+...++.+.+.+.+...++.++...|++++..+..+.+.. ++..++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0 24556778888888886677777779999998887555554 6679999999999996544
No 248
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.80 E-value=6.2e-08 Score=99.97 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=75.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC--cc-eeeccC-------------------cc--------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP--GG-QLMTTT-------------------EV-------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~--gg-~~~~~~-------------------~~-------- 142 (540)
..+||+|||||+||+++|..|++.|++|+|+|+.+..... |. ...... ..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 3589999999999999999999999999999997642100 11 000000 00
Q ss_pred -----ccCCC--CCC-----CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEEC--C--eEEEecEEEEc
Q 009224 143 -----ENFPG--FPD-----GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKSG--E--RKVKCHSIVFA 204 (540)
Q Consensus 143 -----~~~~~--~~~-----~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~~--~--~~~~~d~lviA 204 (540)
..+.. ... ......+.+.+.+.+.+. +++++.+ ++++++.+++.+.+... + .++++|.||.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgA 176 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAA 176 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEe
Confidence 00000 000 011234555565656554 6888866 88888877777766542 2 46999999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
.|...
T Consensus 177 DG~~S 181 (415)
T PRK07364 177 DGARS 181 (415)
T ss_pred CCCCc
Confidence 99764
No 249
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.80 E-value=4.1e-08 Score=88.95 Aligned_cols=86 Identities=17% Similarity=0.325 Sum_probs=62.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE-------------C-----cCCHHHHHHcCCCcccEEEE
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID-------------I-----EEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd-------------~-----~~~~~~~~~~~i~~~Pt~~~ 513 (540)
.+++++++||++||++|+...|.++++.++++.++.++..| . ..+.++.+.|++..+|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 56899999999999999999999999988764344433311 0 01346778899999998777
Q ss_pred E-eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 514 F-KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 514 ~-~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+ ++|++..+.. ....+.+++++++
T Consensus 153 ID~~G~I~~~g~-~~~~~~le~ll~~ 177 (189)
T TIGR02661 153 LDQDGKIRAKGL-TNTREHLESLLEA 177 (189)
T ss_pred ECCCCeEEEccC-CCCHHHHHHHHHH
Confidence 6 7898876522 2455667777764
No 250
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.80 E-value=3.7e-08 Score=102.79 Aligned_cols=116 Identities=25% Similarity=0.356 Sum_probs=74.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-C-CC-----CCcce----eecc-Ccc----------c--cC---
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-A-GG-----VPGGQ----LMTT-TEV----------E--NF--- 145 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-~-~~-----~~gg~----~~~~-~~~----------~--~~--- 145 (540)
..+||+|||||+||++||..+++.|++|+|+|+.. . |. ..||. +... ... . .+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999862 2 11 01111 0000 000 0 00
Q ss_pred -----CCC---CCCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCCC
Q 009224 146 -----PGF---PDGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 146 -----~~~---~~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~~ 208 (540)
|.. ........+...+.+.+.+. +++++.++|+.+..+++.+. |.. ++..+.++.||+|||..
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 000 00123344555666666655 89998888888876655432 333 66789999999999964
No 251
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.80 E-value=1.4e-08 Score=78.38 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
-++-.+...+.+++++|+|+++||++|+.+...+ .++.+.+..++.++.+|.++.....+. ..+++|+++|+.
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 3344566788899999999999999999999988 556665666899999999876654432 227799999975
No 252
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.79 E-value=1.1e-07 Score=83.31 Aligned_cols=108 Identities=24% Similarity=0.366 Sum_probs=69.8
Q ss_pred EEECCCHHHHHHHHHHHHc-----CCceEEEcCCCCCCCCcceeeccCc-----------cccCCC--------------
Q 009224 98 VIIGSGPAGYTAAIYAARA-----NLKPVVFEGYQAGGVPGGQLMTTTE-----------VENFPG-------------- 147 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~-----g~~v~lie~~~~~~~~gg~~~~~~~-----------~~~~~~-------------- 147 (540)
+|||||++|++++.+|.+. ..+|+|||+.+.| .|+.+..... +..++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G--~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~ 78 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFG--AGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANG 78 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcc--ccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcC
Confidence 5999999999999999887 4689999996653 1222211100 000111
Q ss_pred --------CCCCCChHHHHHHHHHHHHH----h--C--CEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 148 --------FPDGITGPDLMDRMRRQAER----W--G--AELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 148 --------~~~~~~~~~~~~~~~~~~~~----~--~--v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
...+.+...+-+|+.+.++. . + ++++..+|+.++..++.+.+.. ++..+.+|+||+|||.
T Consensus 79 ~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 79 ADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 01123333444555544433 2 4 3455679999999988887755 7788999999999995
No 253
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.79 E-value=8.6e-08 Score=100.91 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCCEEeCCCccccCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.|.+|... +|++||+||+|+|+. .. -.....++..|+.|+.++..+...
T Consensus 341 ~GGi~vd~~~-~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~~ 399 (513)
T PRK07512 341 MGGIAVDADG-RSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPAA 399 (513)
T ss_pred cCCEEECCCC-ccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4779999888 799999999999973 11 134566777899999999877543
No 254
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.78 E-value=4.4e-08 Score=87.37 Aligned_cols=116 Identities=29% Similarity=0.417 Sum_probs=66.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCcccc----C---CCCC-----C---CCCh
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEVEN----F---PGFP-----D---GITG 154 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~~~----~---~~~~-----~---~~~~ 154 (540)
..+||+||||||+||+||+.|++.|++|+++|++...+ +.||++...--.+. + .+.+ + -...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 35899999999999999999999999999999976521 23333322100000 0 0110 1 1234
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC-CcE---EEEE----------CCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKS-NPF---TVKS----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~-~~~---~v~~----------~~~~~~~d~lviAtG~~ 208 (540)
.++...+....-+.|++++.. .|+++-..+ +.+ .+.. +-..+++++||=|||-.
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 556666666666689998887 677765444 322 1111 33579999999999964
No 255
>PRK08244 hypothetical protein; Provisional
Probab=98.78 E-value=1.3e-07 Score=99.56 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=77.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec-----------------------------cCcc--c
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT-----------------------------TTEV--E 143 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~-----------------------------~~~~--~ 143 (540)
+||+||||||+|+++|..|++.|++|+||||.+.....+..... .... .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 79999999999999999999999999999996542200100000 0000 0
Q ss_pred cCC----CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE---CC-eEEEecEEEEccCCCC
Q 009224 144 NFP----GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS---GE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 144 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lviAtG~~~ 209 (540)
.+. ..+ ..+....+.+.+.+.+++.|++++.+ +++++..+++.+++.. ++ .++++|+||.|.|.+.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 000 000 01223455666677777889999887 8888887777766543 23 4799999999999865
No 256
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.78 E-value=2.3e-08 Score=103.30 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHhcCCeE------E--EEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeC-CC--CceeeEEEEEc
Q 009224 250 DTATEEAIYLTKFARHV------H--LLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSN-TK--GQMSGILLRKV 318 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v------~--li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~--g~~~~v~~~~~ 318 (540)
.+|.|+...+.+.-.++ . .+.+..+....-.-+.+.+++.||+++++++|+++..+ ++ ++++++.+...
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 47888888886652111 1 11111122222233344578899999999999999875 22 67888887642
Q ss_pred cCCc-eEEEEccEEEEecccccCc
Q 009224 319 DTGE-ESVLEAKGLFYGIGHSPNS 341 (540)
Q Consensus 319 ~~g~-~~~i~~D~vi~a~G~~p~~ 341 (540)
..+. ....+.|.||+++|.-...
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred CceeEEEecCCCEEEEeCCcCccc
Confidence 1111 2234579999999965443
No 257
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.78 E-value=3.7e-08 Score=99.16 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceeec-------------------------------cC--
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMT-------------------------------TT-- 140 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~~-------------------------------~~-- 140 (540)
+||+|||||++|+++|+.|+++|++|+|||+.+..... .+.... ..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999996543210 000000 00
Q ss_pred ----------ccccC---CCCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE----CC--eEEEe
Q 009224 141 ----------EVENF---PGFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS----GE--RKVKC 198 (540)
Q Consensus 141 ----------~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~----~~--~~~~~ 198 (540)
....+ ...+ ......++.+.+.+.+++.+++++.+ +++.+..+.+.+++.. ++ .++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~a 161 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEA 161 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEE
Confidence 00000 0000 11234677888888889999999887 7787887777655443 22 36899
Q ss_pred cEEEEccCCCC
Q 009224 199 HSIVFATGATA 209 (540)
Q Consensus 199 d~lviAtG~~~ 209 (540)
|.||-|-|.+.
T Consensus 162 dlvVgADG~~S 172 (356)
T PF01494_consen 162 DLVVGADGAHS 172 (356)
T ss_dssp SEEEE-SGTT-
T ss_pred eeeecccCccc
Confidence 99999999864
No 258
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.77 E-value=9.7e-07 Score=88.58 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-------c--ceec--
Q 009224 282 QDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-------G--QVEL-- 350 (540)
Q Consensus 282 ~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-------~--~~~~-- 350 (540)
+.+.+++.|++++.+..|.++..++ +++..+.. .++....+.+|.+|+|+|.--...+.. . ++.+
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t---~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~ 344 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHT---RNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQ 344 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEe---cCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCC
Confidence 4445678899999999999988664 34444433 223235699999999999761111110 0 1111
Q ss_pred -------------c----CCCCEEeCCCccc----cCCCceEEccccCCCcchhh------hhhhchHHHHHHHH
Q 009224 351 -------------D----SSGYVIVEEGTAK----TSVEGVFAAGDVQDHEWRQA------VTAAGSGCIAALSV 398 (540)
Q Consensus 351 -------------~----~~g~i~vd~~~~~----t~~~~iya~GD~~~~~~~~~------~~A~~~g~~aa~~i 398 (540)
+ ..-++.+|+.++- ...+|+||+|-+.++. ..+ ..|+..|..||..|
T Consensus 345 ~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~-d~~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 345 LPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGY-DPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred CcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCC-ChHhcCCCchhHHHHHHHHHHhh
Confidence 1 1124788988842 1389999999998752 222 35566666666654
No 259
>PLN02412 probable glutathione peroxidase
Probab=98.77 E-value=6.2e-08 Score=85.92 Aligned_cols=89 Identities=10% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH-HH----HHHcC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP-EI----AEAAG-------------- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~-~~----~~~~~-------------- 504 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++-|+++. .. ++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 468999999999999999999999999999975 58899888642 21 21 22211
Q ss_pred --------------------CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 505 --------------------IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 505 --------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+...|+.+++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 2334777777 88999999999999999999988764
No 260
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=6.9e-08 Score=103.28 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||||.||++||+.|++. .+|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 47999999999999999999986 99999999653
No 261
>PRK08013 oxidoreductase; Provisional
Probab=98.77 E-value=7.5e-08 Score=98.66 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=76.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccc---------------------eeec---c--Cccc---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGG---------------------QLMT---T--TEVE--- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg---------------------~~~~---~--~~~~--- 143 (540)
.+||+||||||+|+++|..|++.|++|+|+|+.+.... .|. .+.. . ....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 37999999999999999999999999999998654110 000 0000 0 0000
Q ss_pred ----------cC----CCCCC---CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEE
Q 009224 144 ----------NF----PGFPD---GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVF 203 (540)
Q Consensus 144 ----------~~----~~~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvi 203 (540)
.+ .+.+. .+...++.+.+.+.+.+. +++++.+ +++.++.+++.+.+.. ++.++++|.||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVg 162 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVG 162 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEE
Confidence 00 00110 122344555666666664 7898887 8888877777776654 667899999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|.|...
T Consensus 163 ADG~~S 168 (400)
T PRK08013 163 ADGANS 168 (400)
T ss_pred eCCCCc
Confidence 999764
No 262
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.76 E-value=4.1e-07 Score=96.88 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=35.0
Q ss_pred ccCCCceEEccccCCC-cchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 364 KTSVEGVFAAGDVQDH-EWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+|++||+||+|||+.. ..+.+..+..+|..++.++..++...
T Consensus 403 ~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~~ 445 (614)
T TIGR02061 403 MTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILDH 445 (614)
T ss_pred ccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHhC
Confidence 7899999999999763 34677888999999999999988643
No 263
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.75 E-value=1.3e-07 Score=98.61 Aligned_cols=117 Identities=24% Similarity=0.305 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccceeec--cCc---------------------c----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMT--TTE---------------------V---- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~--~~~---------------------~---- 142 (540)
++||+|||||.|||+||..|++.|.+|+|+||....+. .+|.-.. ... .
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 37999999999999999999999999999999653220 1111000 000 0
Q ss_pred ------------ccCC--------C--CCC-----CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcE-EEEECCe
Q 009224 143 ------------ENFP--------G--FPD-----GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPF-TVKSGER 194 (540)
Q Consensus 143 ------------~~~~--------~--~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~-~v~~~~~ 194 (540)
...+ + ++. ...+..+.+.+.+.+++.|++++.+.++.+..+++.+ .+..++.
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~ 160 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGE 160 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCE
Confidence 0000 0 000 1234567888888888899999888887776554443 2444667
Q ss_pred EEEecEEEEccCCCCC
Q 009224 195 KVKCHSIVFATGATAK 210 (540)
Q Consensus 195 ~~~~d~lviAtG~~~~ 210 (540)
.+.++.||+|||+...
T Consensus 161 ~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 161 LLKFDATVIATGGFSG 176 (466)
T ss_pred EEEeCeEEECCCcCcC
Confidence 8999999999998643
No 264
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.75 E-value=1.3e-07 Score=72.59 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=62.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEe
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE 175 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (540)
+|+|||||+.|+.+|..|++.|.+|+|+++.+. +. ....++....+.+.+++.|++++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~---~~-----------------~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR---LL-----------------PGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS---SS-----------------TTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch---hh-----------------hhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 589999999999999999999999999997664 11 1234678888999999999999998
Q ss_pred -eEEEEEeeCCcEEEE
Q 009224 176 -DVEFIDVKSNPFTVK 190 (540)
Q Consensus 176 -~v~~i~~~~~~~~v~ 190 (540)
.+..++.+++.+.|.
T Consensus 61 ~~v~~i~~~~~~~~V~ 76 (80)
T PF00070_consen 61 TKVKEIEKDGDGVEVT 76 (80)
T ss_dssp EEEEEEEEETTSEEEE
T ss_pred CEEEEEEEeCCEEEEE
Confidence 888898888764443
No 265
>PRK09126 hypothetical protein; Provisional
Probab=98.74 E-value=1.1e-07 Score=97.31 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=74.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcce-------------------eeccC--cc-----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQ-------------------LMTTT--EV----- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~-------------------~~~~~--~~----- 142 (540)
.+||+||||||+|+++|..|+++|++|+|+|+..... ..|.. +.... ..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 4799999999999999999999999999999976410 00100 00000 00
Q ss_pred ccCC-----CCCC----------CCChHHHHHHHHHHHH-HhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEc
Q 009224 143 ENFP-----GFPD----------GITGPDLMDRMRRQAE-RWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFA 204 (540)
Q Consensus 143 ~~~~-----~~~~----------~~~~~~~~~~~~~~~~-~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviA 204 (540)
..-. .++. ......+.+.+.+.+. ..|++++.+ +|++++.+++.+.+.. ++..+.+|.||.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~A 162 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAA 162 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEe
Confidence 0000 0000 0111234444444443 358999887 8888887777776654 5678999999999
Q ss_pred cCCCCC
Q 009224 205 TGATAK 210 (540)
Q Consensus 205 tG~~~~ 210 (540)
.|....
T Consensus 163 dG~~S~ 168 (392)
T PRK09126 163 DSRFSA 168 (392)
T ss_pred CCCCch
Confidence 997653
No 266
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=9.6e-08 Score=79.02 Aligned_cols=91 Identities=20% Similarity=0.385 Sum_probs=76.1
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC----------------CHHHHHHcCCCc
Q 009224 447 KLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE----------------DPEIAEAAGIMG 507 (540)
Q Consensus 447 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~i~~ 507 (540)
+.+...++-.++.|-++.|++|.+++..+ +++.+-+.+++.++.+|+.. ..+|++.|++++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 44556678899999999999999999887 55666666678888888752 238999999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
+||+++| ++|+.+..+.|+.+.+++...++
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred CceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 9999999 77899999999999998876654
No 267
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.74 E-value=9.3e-07 Score=82.99 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=72.3
Q ss_pred HHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-----------cce-
Q 009224 281 MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-----------GQV- 348 (540)
Q Consensus 281 ~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-----------~~~- 348 (540)
...+.+++.|..++.+-.|.+.+-.. ++++.+...+ .....+.+|..|+|+|.--...+.. ..+
T Consensus 263 ~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn---~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~ 338 (421)
T COG3075 263 QLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRN---HADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL 338 (421)
T ss_pred HHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecc---cccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence 33444677888899999998887654 5566555543 5556677999999999543322211 011
Q ss_pred ------eccCC----------CCEEeCCCcccc----CCCceEEccccCCCcchhh------hhhhchHHHHHHHHHHHH
Q 009224 349 ------ELDSS----------GYVIVEEGTAKT----SVEGVFAAGDVQDHEWRQA------VTAAGSGCIAALSVERYL 402 (540)
Q Consensus 349 ------~~~~~----------g~i~vd~~~~~t----~~~~iya~GD~~~~~~~~~------~~A~~~g~~aa~~i~~~l 402 (540)
++... -.+.+|+.++-. .+.|+||+|.+.++ +..+ ..|+..|..||..|....
T Consensus 339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgG-fdpi~egcGsGVaivta~~aa~qi~~~~ 417 (421)
T COG3075 339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGG-FDPIAEGCGSGVAIVTALHAAEQIAERA 417 (421)
T ss_pred cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcC-CcHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 11111 135667666221 35799999999885 2332 345666777777776655
Q ss_pred hc
Q 009224 403 VN 404 (540)
Q Consensus 403 ~~ 404 (540)
.+
T Consensus 418 ~~ 419 (421)
T COG3075 418 GG 419 (421)
T ss_pred cc
Confidence 43
No 268
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.74 E-value=8.9e-08 Score=97.73 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=77.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-----ceeecc-----------------C----cc-------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-----GQLMTT-----------------T----EV------- 142 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-----g~~~~~-----------------~----~~------- 142 (540)
||+|||||+||+++|..|++.|++|+|+|+.......+ ...... . ..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 79999999999999999999999999999976421000 000000 0 00
Q ss_pred ------ccCCC----CC---CCCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccC
Q 009224 143 ------ENFPG----FP---DGITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 143 ------~~~~~----~~---~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG 206 (540)
..++. .+ ......++.+.+.+.+.+.+ ++++.+ +|+.++..++.+.+.. ++..+.+|.||.|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence 00000 00 01223556677777777777 888887 8999988788777765 566799999999999
Q ss_pred CCC
Q 009224 207 ATA 209 (540)
Q Consensus 207 ~~~ 209 (540)
...
T Consensus 161 ~~S 163 (385)
T TIGR01988 161 ANS 163 (385)
T ss_pred CCC
Confidence 764
No 269
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.74 E-value=8.4e-08 Score=97.80 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=76.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCC-Cc----ceeeccC------------cc----------c----
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGV-PG----GQLMTTT------------EV----------E---- 143 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~-~g----g~~~~~~------------~~----------~---- 143 (540)
||+||||||+|+++|..|++.| ++|+|+|+...... .+ +....+. .. .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999653210 00 0000000 00 0
Q ss_pred ------cCC----CCC---CCCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 144 ------NFP----GFP---DGITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 144 ------~~~----~~~---~~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
.+. +.+ ..+...++.+.+.+.+.+ .|++++.+ +|+++..+++.+++.. ++..+.+|.||.|.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence 000 000 012234566677777777 48999876 8999887777777765 5567999999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 161 ~S 162 (382)
T TIGR01984 161 NS 162 (382)
T ss_pred Ch
Confidence 64
No 270
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.74 E-value=1.4e-07 Score=97.29 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=44.0
Q ss_pred HHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccC
Q 009224 284 RVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340 (540)
Q Consensus 284 ~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 340 (540)
+.+++.|++++.++.++++..+ ++++.++.+.+..++....+.++.||+|+|--..
T Consensus 149 ~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 149 KAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3456778999999999999886 5689999998777788888999999999997655
No 271
>PLN02661 Putative thiazole synthesis
Probab=98.74 E-value=1.3e-07 Score=92.17 Aligned_cols=115 Identities=22% Similarity=0.303 Sum_probs=68.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCC---CCcceeeccC-------c-cccCCCCCCCC--------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGG---VPGGQLMTTT-------E-VENFPGFPDGI-------- 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~---~~gg~~~~~~-------~-~~~~~~~~~~~-------- 152 (540)
..+||+|||||++|+.||+.|++. |++|+|+|+....+ +.++++.... . +.. .+.+...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeE-lGV~fd~~dgy~vv~ 169 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDE-LGVPYDEQENYVVIK 169 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHH-cCCCcccCCCeeEec
Confidence 357999999999999999999986 89999999976511 1222211110 0 000 1221111
Q ss_pred ChHHHHHHHHHHHH-HhCCEEEEe-eEEEEEeeCCc---EEE----E--E-C------CeEEEecEEEEccCCC
Q 009224 153 TGPDLMDRMRRQAE-RWGAELHQE-DVEFIDVKSNP---FTV----K--S-G------ERKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~v~~~~~-~v~~i~~~~~~---~~v----~--~-~------~~~~~~d~lviAtG~~ 208 (540)
...++...+.+.+. +.|++++.+ .++++-.+++. +.+ . . . ...+++++||+|||..
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 12333445555444 468998887 66666544432 111 0 0 1 1368999999999943
No 272
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.73 E-value=6.1e-08 Score=85.82 Aligned_cols=83 Identities=7% Similarity=0.031 Sum_probs=63.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEE------EEEECcC-----------------------------C
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHF------VEIDIEE-----------------------------D 496 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~------~~vd~~~-----------------------------~ 496 (540)
.+++.+|+||+.||++|+...|.++++.++- +.+ +.||.++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~---~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAK---FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcC---CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 4899999999999999999999999996542 223 4555543 2
Q ss_pred HHHHHHcCCCcccEE-EEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 497 PEIAEAAGIMGTPCV-QFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 497 ~~~~~~~~i~~~Pt~-~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
..+...|++.++|+. +++ ++|+++.++.|..+.+++++.+.
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 234567899999855 455 88999999999998887766443
No 273
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.73 E-value=9.2e-08 Score=83.72 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=68.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-------CCH----HHHHH-cCC-------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-------EDP----EIAEA-AGI------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-------~~~----~~~~~-~~i------------- 505 (540)
.+++++|.||++||++|+...|.++++.+++.+ ++.++.|+++ +.. +.+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 467899999999999999999999999999974 6899988862 111 22322 211
Q ss_pred -------------CcccE----EEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 -------------MGTPC----VQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 -------------~~~Pt----~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
..+|+ .+++ ++|+++.++.|..+.+++.+.|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 13674 4444 99999999999999999999998764
No 274
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.73 E-value=1.3e-08 Score=108.15 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCccHHHHHHH-------HHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCC
Q 009224 239 KGQVLAVVGGGDTATEEAIY-------LTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~-------l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
.++.++++|++.++++.+.. +.+.+.+|++......... ....+.+.+++.|+++++++.++++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~- 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE- 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-
Confidence 46678899999999987754 4555556555443322111 2233445567889999999999999875
Q ss_pred CCceeeEEEEEccCCceEEEEcc-EEEEecc-cccCccccc
Q 009224 307 KGQMSGILLRKVDTGEESVLEAK-GLFYGIG-HSPNSQLLQ 345 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D-~vi~a~G-~~p~~~~~~ 345 (540)
++++.++.+.. ++....+.++ .||+|+| +.+|.+++.
T Consensus 238 ~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 238 DGRVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred CCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 46788887753 3556678885 6888766 566665544
No 275
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.73 E-value=1.2e-07 Score=97.29 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=77.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-------------------------cc-----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-------------------------VE----- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-------------------------~~----- 143 (540)
..||+|||||++|+++|..|++.|++|+|+|+.+.....|..+..... ..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 479999999999999999999999999999997642211111100000 00
Q ss_pred ----cCC---------CCCC-CCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccC
Q 009224 144 ----NFP---------GFPD-GITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 144 ----~~~---------~~~~-~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG 206 (540)
..+ +.+. .+...++.+.+.+.+.+.+ ++++.+ +++.++.+++.+.+.. ++.++.+|.||.|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 163 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDG 163 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCC
Confidence 000 0000 1233455666666666654 888877 8888887777777765 556799999999999
Q ss_pred CCC
Q 009224 207 ATA 209 (540)
Q Consensus 207 ~~~ 209 (540)
...
T Consensus 164 ~~S 166 (396)
T PRK08163 164 VKS 166 (396)
T ss_pred cCh
Confidence 764
No 276
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.72 E-value=2.3e-07 Score=96.69 Aligned_cols=100 Identities=17% Similarity=0.274 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||++|+.+|..|++.|.+|+|+++.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-------ll--------~~-----~d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ-------LL--------PG-----EDEDIAHILREKLENDGVKIF 229 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-------cC--------cc-----ccHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999997543 11 11 124677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECC--eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++.++..+.+..++ .++.+|.|++|+|..|+...
T Consensus 230 ~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 230 TGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred ECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 98 788888766666665444 36899999999999887643
No 277
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.72 E-value=1.1e-07 Score=96.51 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=76.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC----CCCcceeecc-C-------------------ccc-----c
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG----GVPGGQLMTT-T-------------------EVE-----N 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~----~~~gg~~~~~-~-------------------~~~-----~ 144 (540)
++||+|||||++|+++|..|++.|++|+|+|+.+.. ...+...... . ... .
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 469999999999999999999999999999985310 0000000000 0 000 0
Q ss_pred CCC-----CC--------CCCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 145 FPG-----FP--------DGITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 145 ~~~-----~~--------~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
..+ +. ......++...+.+.+.+.+ ++++.+ +++.+..+++.+.+..++.++++|.||.|-|...
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S 160 (374)
T PRK06617 81 NKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANS 160 (374)
T ss_pred CCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCc
Confidence 000 00 01234566677777777765 777766 7888877777777776555899999999999764
No 278
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.72 E-value=1.5e-07 Score=96.23 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=76.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc---------------ceeecc---C-c-----cccCCC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG---------------GQLMTT---T-E-----VENFPG- 147 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g---------------g~~~~~---~-~-----~~~~~~- 147 (540)
+.+||+|||||++|+++|..|++.|++|+|||+.+...... |.+... . . .....+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 34799999999999999999999999999999975421000 000000 0 0 000000
Q ss_pred --------C--------C--CCCChHHHHHHHHHHHHHhC-CEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 148 --------F--------P--DGITGPDLMDRMRRQAERWG-AELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 148 --------~--------~--~~~~~~~~~~~~~~~~~~~~-v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
+ + ..+....+.+.+.+.+.+.+ +.....+|+.+..+++.+.+.. ++..+++|.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~ 165 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGR 165 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCC
Confidence 0 0 01233455666666666664 5544448889888888887765 5567999999999998
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 166 ~S 167 (388)
T PRK07494 166 NS 167 (388)
T ss_pred Cc
Confidence 64
No 279
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.72 E-value=2.4e-07 Score=96.92 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=80.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. +. ...++...+.+.+++.|+++
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~l------------~~-----~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR---IL------------PG-----EDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC---CC------------CC-----CCHHHHHHHHHHHHHcCCEE
Confidence 347899999999999999999999999999997553 11 11 12466677888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 229 ~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 229 LTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 988 7888887777776654 34 4799999999999998765
No 280
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.71 E-value=5.2e-08 Score=98.87 Aligned_cols=95 Identities=16% Similarity=0.331 Sum_probs=77.5
Q ss_pred HHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEECcCCH----HHHHHcCCCcccEEEEEe
Q 009224 444 ALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILG---KVIDEFDENVHFVEIDIEEDP----EIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 444 ~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~Pt~~~~~ 515 (540)
++++...+ .++|++++||++||-.||.+++..- +...+.. ++...+.|+++|. ++.++|++.++|++++|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 55565544 3469999999999999999998873 3344444 6889999998764 577899999999999995
Q ss_pred -CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 516 -NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 -~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|++.....|..+.+.+.+++++.
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHh
Confidence 888877799999999999999874
No 281
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.70 E-value=3.2e-07 Score=97.72 Aligned_cols=118 Identities=20% Similarity=0.311 Sum_probs=79.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-------------------------------ceeeccC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-------------------------------GQLMTTT 140 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-------------------------------g~~~~~~ 140 (540)
...+||+||||||+|+++|..|++.|++|+|||+.......+ ..+....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 345899999999999999999999999999999975421000 0010000
Q ss_pred c--cccCC-------CCCC--CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE---CC--eEEEecEEE
Q 009224 141 E--VENFP-------GFPD--GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIV 202 (540)
Q Consensus 141 ~--~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lv 202 (540)
. ...+. +++. .+...++.+.+.+.+.+. +++++.+ ++++++.+++.+++.. ++ .++++|+||
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEE
Confidence 0 00000 1111 123345556666666665 8999887 8999988888777654 23 579999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|.|.+.
T Consensus 168 gADG~~S 174 (538)
T PRK06183 168 GCDGANS 174 (538)
T ss_pred ecCCCch
Confidence 9999864
No 282
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.70 E-value=1.7e-07 Score=100.18 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=60.6
Q ss_pred CCEEEEEeCCccH-HHHHHHHHhcCCeEEEEEecccc----------------cc---cHHHHHHHhcCCCeEEEeCceE
Q 009224 240 GQVLAVVGGGDTA-TEEAIYLTKFARHVHLLVRREQL----------------RA---SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 240 ~k~v~VvG~G~~a-~e~a~~l~~~g~~v~li~~~~~~----------------~~---~~~~~~~~l~~~gv~~~~~~~v 299 (540)
..++.++|++.++ .+++..+...+..+.+..+...+ .. ....+.+.+++.|++++.++.+
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 3466678887765 56666555444433332221110 00 1122333456789999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEc-cEEEEecccccC
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEA-KGLFYGIGHSPN 340 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~ 340 (540)
+++..+ ++++.+|.+.. ++....+.+ +.||+|+|.-.+
T Consensus 241 ~~l~~~-~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLRE-DGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEe-CCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCccc
Confidence 998765 46788887754 233456888 999999986554
No 283
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.69 E-value=1.8e-07 Score=95.32 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC--C---cc---eeecc-----------Cccc---cCC------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV--P---GG---QLMTT-----------TEVE---NFP------ 146 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~--~---gg---~~~~~-----------~~~~---~~~------ 146 (540)
+||+|||||++|+++|..|++.|++|+|||+.+.... . +. .+... .... ..+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998641100 0 10 01000 0000 000
Q ss_pred ----C----CC-CC---------CChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEcc
Q 009224 147 ----G----FP-DG---------ITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFAT 205 (540)
Q Consensus 147 ----~----~~-~~---------~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAt 205 (540)
. +. .. .....+...+.+.+... +++++.+ ++++++.+++.+++.. ++.++++|.||.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgAD 163 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGAD 163 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 0 00 00 01122233333444443 6888876 8888887777776665 66789999999999
Q ss_pred CCCCC
Q 009224 206 GATAK 210 (540)
Q Consensus 206 G~~~~ 210 (540)
|....
T Consensus 164 G~~S~ 168 (384)
T PRK08849 164 GANSQ 168 (384)
T ss_pred CCCch
Confidence 98653
No 284
>PRK11445 putative oxidoreductase; Provisional
Probab=98.69 E-value=2.4e-07 Score=93.03 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=72.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----C-Ccceeecc--------------Ccccc---------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----V-PGGQLMTT--------------TEVEN--------- 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~-~gg~~~~~--------------~~~~~--------- 144 (540)
++||+||||||||+++|..|++. ++|+|+|+.+... . -|+.+... ....+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 47999999999999999999999 9999999876311 0 11111100 00000
Q ss_pred -CC-------CCCC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCC
Q 009224 145 -FP-------GFPD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 145 -~~-------~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
+. +.+. .+...++.+.+.+ ....+++++.+ .++.+..+++.+.+.. ++. ++++|.||.|+|...
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00 0010 1233444444444 34568888877 7788887777777653 343 689999999999864
No 285
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.69 E-value=3.2e-07 Score=95.96 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=80.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . |. ...++.+.+.+.+++.|++++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~gV~i~ 231 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR---I----L--------PG-----EDKEISKLAERALKKRGIKIK 231 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC---c----C--------Cc-----CCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 1 1 11 124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++.+++.+.+.. ++ ..+.+|.||+|+|.+|+...
T Consensus 232 ~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 232 TGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred eCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 98 8888987766666543 33 67999999999999987653
No 286
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.69 E-value=7.2e-08 Score=80.10 Aligned_cols=84 Identities=25% Similarity=0.575 Sum_probs=71.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcC--CCcccEEEEEeCCeEEEEeeC--CC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAG--IMGTPCVQFFKNKEMIRTVPG--VK 527 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~~ 527 (540)
++++++.||++||++|+.+.|.+.++.+++...+.++.+|.. .+.++...|+ +..+|+++++.+++.+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 778999999999999999999999999999867899999997 8899999999 999999999999877666665 45
Q ss_pred CHHHHHHHH
Q 009224 528 MKKEYREFI 536 (540)
Q Consensus 528 ~~~~~~~~i 536 (540)
+.+.+....
T Consensus 112 ~~~~~~~~~ 120 (127)
T COG0526 112 PKEALIDAL 120 (127)
T ss_pred CHHHHHHHh
Confidence 555555443
No 287
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.68 E-value=1.7e-07 Score=95.55 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+..++.++.+|+||+|+|..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 445556666677789999887 799998877778777666689999999999975
No 288
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.68 E-value=2e-07 Score=95.80 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=73.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CC---CCCCc--ce-eecc-----------Cccc------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QA---GGVPG--GQ-LMTT-----------TEVE------------ 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~---~~~~g--g~-~~~~-----------~~~~------------ 143 (540)
.+||+|||||++|+++|..|++.|++|+|+|+. +. +..++ +. +... ....
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999985 21 00000 00 0000 0000
Q ss_pred ---c------CCC----CCC---CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEc
Q 009224 144 ---N------FPG----FPD---GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFA 204 (540)
Q Consensus 144 ---~------~~~----~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviA 204 (540)
. +.. .+. ......+.+.+.+.+.+. +++++.+ +|+.++.+++.+.+.. +++.+++|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgA 163 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGA 163 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEe
Confidence 0 000 000 011233444555555554 6888877 8888887777777765 5678999999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
.|...
T Consensus 164 DG~~S 168 (405)
T PRK08850 164 DGANS 168 (405)
T ss_pred CCCCC
Confidence 99764
No 289
>PRK07588 hypothetical protein; Provisional
Probab=98.68 E-value=2.1e-07 Score=95.14 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC--------------------cc------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT--------------------EV------------ 142 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~--------------------~~------------ 142 (540)
.||+|||||++|+++|..|++.|++|+|+|+.+.....|..+.... ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 3799999999999999999999999999998654221111010000 00
Q ss_pred -ccCC--CCC-------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 143 -ENFP--GFP-------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 143 -~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
..+. .+. ......++...+.+.+ ..+++++.+ +|+.++.+++.+.+.. ++..+++|.||.|.|.+.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0000 000 0112233444444433 336888887 8889988888777765 566789999999999764
No 290
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.67 E-value=2.7e-07 Score=94.04 Aligned_cols=116 Identities=23% Similarity=0.282 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-CCC-----------------CCcc--eeec------------cCc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-AGG-----------------VPGG--QLMT------------TTE 141 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-~~~-----------------~~gg--~~~~------------~~~ 141 (540)
.+||+||||||+|+++|..|++.|++|+|||+.. ..- ..|- .+.. ...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 111 0010 0000 000
Q ss_pred -------cccCC--CCCCCCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCC
Q 009224 142 -------VENFP--GFPDGITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGAT 208 (540)
Q Consensus 142 -------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~ 208 (540)
..... .+...+...++...+.+.+.+.+ ++++.+ +|+.++.+++.+.+.. +++++++|.||-|-|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 00000 00011344677888888888776 899987 8999998887666544 56789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 162 S 162 (387)
T COG0654 162 S 162 (387)
T ss_pred h
Confidence 3
No 291
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.67 E-value=3.7e-07 Score=95.82 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=43.2
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
.|.+++|.....+..+|+||+|+|++.. ......++..|+.|+..+.+++......
T Consensus 355 mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~ 418 (562)
T COG1053 355 MGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGS 418 (562)
T ss_pred cCCEeecccccccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4678888522257799999999999621 2466778889999999999999877653
No 292
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.67 E-value=2e-07 Score=95.53 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=73.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCC-CCC-CCc-----ceeecc--------C---cc----------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQ-AGG-VPG-----GQLMTT--------T---EV---------- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~-~~~-~~g-----g~~~~~--------~---~~---------- 142 (540)
.+||+|||||+||+++|..|++. |++|+|+|+.. ... .++ ..+... . ..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 99999999942 110 000 000000 0 00
Q ss_pred ----c------cC----CCCCC---CCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEE
Q 009224 143 ----E------NF----PGFPD---GITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 143 ----~------~~----~~~~~---~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lv 202 (540)
. .+ .+.+. .....++...+.+.+.+ .|++++.+ +++.+..+++.+.+.. ++..+.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 162 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLV 162 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 0 00 00000 01123344455555555 37888876 8888887777777765 55679999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|.|...
T Consensus 163 ~AdG~~S 169 (395)
T PRK05732 163 AADGSHS 169 (395)
T ss_pred EecCCCh
Confidence 9999764
No 293
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.65 E-value=1.5e-07 Score=70.96 Aligned_cols=69 Identities=28% Similarity=0.597 Sum_probs=54.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH----HHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE----IAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
+..|+++||++|+.+.+.+++ .++.+..+|++++++ +.+.+++.++|++++. |+. +.|. +.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CHHHH
Confidence 467999999999999988876 258889999988765 4566899999998874 653 6664 66788
Q ss_pred HHHHH
Q 009224 533 REFIE 537 (540)
Q Consensus 533 ~~~i~ 537 (540)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88774
No 294
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.65 E-value=1.2e-07 Score=82.90 Aligned_cols=83 Identities=11% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHH-cC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEA-AG-------------- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~-~~-------------- 504 (540)
.+++++++||++||+ |+...|.++++.+++.+ ++.++.|+++. .+ +.+++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 368999999999999 99999999999999964 68888887642 11 23322 22
Q ss_pred ---------CCccc-----------EEEEE-eCCeEEEEeeCCCCHHHHHHH
Q 009224 505 ---------IMGTP-----------CVQFF-KNKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 505 ---------i~~~P-----------t~~~~-~~g~~~~~~~g~~~~~~~~~~ 535 (540)
+.++| +.+++ ++|+++.++.|..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 13456 45566 899999999999988877654
No 295
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.65 E-value=7.1e-08 Score=81.35 Aligned_cols=70 Identities=20% Similarity=0.541 Sum_probs=57.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEECcCC-------------------------HHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN---VHFVEIDIEED-------------------------PEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-------------------------~~~~~~~ 503 (540)
.++.+.++|.+.||++|+.+.|.+.+++++..++ +.++.|+-|.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 3589999999999999999999999999988654 77777766543 2567889
Q ss_pred CCCcccEEEEE-eCCeEEE
Q 009224 504 GIMGTPCVQFF-KNKEMIR 521 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~ 521 (540)
+|.++|+++++ .+|+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999999998 7786664
No 296
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.64 E-value=6e-07 Score=94.02 Aligned_cols=100 Identities=16% Similarity=0.284 Sum_probs=76.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~-------il--------~~-----~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR-------IL--------PT-----EDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-------cC--------Cc-----CCHHHHHHHHHHHHhcCCEEE
Confidence 47999999999999999999999999999997543 11 11 124667778888899999999
Q ss_pred Ee-eEEEEEe--eCCcEEEE-ECC--eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDV--KSNPFTVK-SGE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~--~~~~~~v~-~~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++. +++...+. .++ ..+.+|.||+|+|..|+...
T Consensus 240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 98 7888875 33322222 233 46999999999999987643
No 297
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.64 E-value=2.3e-08 Score=103.02 Aligned_cols=109 Identities=26% Similarity=0.341 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccc--------------------cCC---CCC---
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE--------------------NFP---GFP--- 149 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~--------------------~~~---~~~--- 149 (540)
||||||||+||++||..+++.|.+|+|+|+... +||......... ... +.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~---lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF---LGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS---STGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCcc---CCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 799999999999999999999999999999887 666543221100 000 000
Q ss_pred -------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc---EEEEE--CCeEEEecEEEEccCC
Q 009224 150 -------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP---FTVKS--GERKVKCHSIVFATGA 207 (540)
Q Consensus 150 -------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~---~~v~~--~~~~~~~d~lviAtG~ 207 (540)
....+..+...+.+.+++.|++++.+ .+..+..+++. +.+.. +..++.++.+|-|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01223334445556677789999887 77777766633 33332 3567999999999993
No 298
>PRK06126 hypothetical protein; Provisional
Probab=98.63 E-value=5.4e-07 Score=96.22 Aligned_cols=117 Identities=22% Similarity=0.340 Sum_probs=74.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccce---------------------------------eec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQ---------------------------------LMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg~---------------------------------~~~ 138 (540)
..+||+|||||++|+++|..|+++|++|+|+|+.+.... +.+. +..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 458999999999999999999999999999998653210 0000 000
Q ss_pred --cC-ccc--cCCC----------------CC---CCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-
Q 009224 139 --TT-EVE--NFPG----------------FP---DGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS- 191 (540)
Q Consensus 139 --~~-~~~--~~~~----------------~~---~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~- 191 (540)
.. ... .++. .+ .......+...+.+.+++. +++++.+ ++++++.+++.+++..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~ 165 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE 165 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence 00 000 0000 00 0122233455566666554 7899887 8899988777665532
Q ss_pred ---CC--eEEEecEEEEccCCCC
Q 009224 192 ---GE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 192 ---~~--~~~~~d~lviAtG~~~ 209 (540)
++ .++++|+||.|.|.+.
T Consensus 166 ~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 166 DLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred ECCCCcEEEEEEEEEEecCCcch
Confidence 23 3689999999999864
No 299
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.63 E-value=2.9e-07 Score=94.11 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+..+.+.+.+.+++.|++++.+ +|..++.+++.+.+..+...+.+|.||+|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCcch
Confidence 3455666666777889999887 8888887777777776666899999999999763
No 300
>PRK06996 hypothetical protein; Provisional
Probab=98.63 E-value=3.3e-07 Score=93.83 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=78.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcC----CceEEEcCCCCCCCC---cceeecc----------------C---cc--
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARAN----LKPVVFEGYQAGGVP---GGQLMTT----------------T---EV-- 142 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g----~~v~lie~~~~~~~~---gg~~~~~----------------~---~~-- 142 (540)
.+..+||+||||||+|+++|..|++.| ++|+|+|+....... .+..... . ..
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 345589999999999999999999987 479999986421100 0000000 0 00
Q ss_pred c--c--------C--CCCCC---CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEEC-C---eEEEecEEE
Q 009224 143 E--N--------F--PGFPD---GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSG-E---RKVKCHSIV 202 (540)
Q Consensus 143 ~--~--------~--~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~-~---~~~~~d~lv 202 (540)
. . . ...+. .....++.+.+.+.+.+.+++++.+ +++.++...+.+++... + .++++|.||
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV 167 (398)
T ss_pred ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence 0 0 0 00111 1234567778888888889998887 78888777777877652 1 589999999
Q ss_pred EccCC
Q 009224 203 FATGA 207 (540)
Q Consensus 203 iAtG~ 207 (540)
-|.|.
T Consensus 168 gADG~ 172 (398)
T PRK06996 168 QAEGG 172 (398)
T ss_pred ECCCC
Confidence 99995
No 301
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.63 E-value=3.5e-07 Score=93.05 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+.+.|++++.+ +|+.+..+++.+.+.++...+.+|+||+|+|..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcc
Confidence 444555555667789999876 799998877778887766689999999999975
No 302
>PRK07045 putative monooxygenase; Reviewed
Probab=98.63 E-value=5.2e-07 Score=92.16 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=74.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceeecc-------------------------------C
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMTT-------------------------------T 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~~~-------------------------------~ 140 (540)
..+||+||||||+|+++|..|++.|++|+|+|+.+..... ++....+ .
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 3579999999999999999999999999999987643210 1000000 0
Q ss_pred cc---ccCCCCC--C---CCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCC
Q 009224 141 EV---ENFPGFP--D---GITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 141 ~~---~~~~~~~--~---~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~ 207 (540)
.. ..+.... . .+...++.+.+.+.+.. .+++++.+ +++.+...++.. .+.. ++.++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 00 0000000 0 01233455555555543 47888887 888887655542 3443 5678999999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 164 ~S 165 (388)
T PRK07045 164 RS 165 (388)
T ss_pred Ch
Confidence 64
No 303
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.63 E-value=6.7e-07 Score=93.49 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=78.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. +. ...++...+.+.+++.|++++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-------LL--------PR-----EEPEISAAVEEALAEEGIEVV 225 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-------CC--------Cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 11 11 124566778888899999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|+.++.+++.+.+.. ++.++.+|.||+|+|..|+...
T Consensus 226 ~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 226 TSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred cCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 98 6888877655544432 2367999999999999987653
No 304
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.63 E-value=3.3e-07 Score=81.88 Aligned_cols=89 Identities=18% Similarity=0.334 Sum_probs=69.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-----------------------------CHHHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-----------------------------~~~~~~ 501 (540)
.+++++++||++||+.|....+.+.++.+++. .++.|+.|..+. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 56899999999999999999999999999997 468999887753 123466
Q ss_pred HcCCCcccEEEEE-eCCeEEEEee---------CCCCHHHHHHHHHhhC
Q 009224 502 AAGIMGTPCVQFF-KNKEMIRTVP---------GVKMKKEYREFIEANK 540 (540)
Q Consensus 502 ~~~i~~~Pt~~~~-~~g~~~~~~~---------g~~~~~~~~~~i~~~l 540 (540)
.|++..+|+++++ ++|+++.+.. +..+.+++.+.|++.|
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence 7899999998888 6888775521 2235677888887653
No 305
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.8e-08 Score=85.99 Aligned_cols=83 Identities=13% Similarity=0.247 Sum_probs=71.2
Q ss_pred HHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCCHHHHHHcCCC------cccEEEE
Q 009224 442 QYALRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEEDPEIAEAAGIM------GTPCVQF 513 (540)
Q Consensus 442 ~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~i~------~~Pt~~~ 513 (540)
++++++.+ .+..+.++|.|++.|.+.|..+.|.|.++..+|. +.++|.++|+...++.+++|+|. ..||+++
T Consensus 132 ~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~il 211 (265)
T KOG0914|consen 132 MQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYIL 211 (265)
T ss_pred hhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEE
Confidence 34444444 4456789999999999999999999999999997 47999999999999999999884 5899999
Q ss_pred EeCCeEEEEee
Q 009224 514 FKNKEMIRTVP 524 (540)
Q Consensus 514 ~~~g~~~~~~~ 524 (540)
|.+|+++.|..
T Consensus 212 Fq~gkE~~RrP 222 (265)
T KOG0914|consen 212 FQKGKEVSRRP 222 (265)
T ss_pred EccchhhhcCc
Confidence 99999987654
No 306
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.62 E-value=3.9e-07 Score=92.55 Aligned_cols=99 Identities=14% Similarity=0.311 Sum_probs=78.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. + .. . ..+.+....+.+.+++.|++++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~---~----l~--------~----~~~~~~~~~l~~~l~~~gV~i~ 201 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS---L----LA--------S----LMPPEVSSRLQHRLTEMGVHLL 201 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc---c----cc--------h----hCCHHHHHHHHHHHHhCCCEEE
Confidence 46899999999999999999999999999996543 1 10 1 1124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ ++..++.+++.+.+.. ++.++.+|.||+|+|..|+.
T Consensus 202 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 202 LKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred ECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 86 7888887666665554 66789999999999998764
No 307
>PRK05868 hypothetical protein; Validated
Probab=98.62 E-value=4.7e-07 Score=91.64 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=71.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC--------------------cc-----c-----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT--------------------EV-----E----- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~--------------------~~-----~----- 143 (540)
|+||+|||||++|+++|..|++.|++|+|+|+.+.....|..+.... .. .
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 46899999999999999999999999999998654221111110000 00 0
Q ss_pred ---cCCC-CCC--C-------CChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 144 ---NFPG-FPD--G-------ITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 144 ---~~~~-~~~--~-------~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
..+. .+. . ....++.+.+.+ ....+++++.+ +++.++.+++.+++.. ++.++++|.||-|-|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 0000 000 0 001222222222 12357888877 7888887777777765 56789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 160 S 160 (372)
T PRK05868 160 S 160 (372)
T ss_pred c
Confidence 4
No 308
>PRK06753 hypothetical protein; Provisional
Probab=98.62 E-value=4.2e-07 Score=92.32 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=70.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC--------------------cc-----ccCCC---
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT--------------------EV-----ENFPG--- 147 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~--------------------~~-----~~~~~--- 147 (540)
+|+|||||+||+++|..|++.|++|+|+|+.+.....|..+.... .. ...-+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 799999999999999999999999999999764221111000000 00 00000
Q ss_pred --CC-------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 148 --FP-------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 148 --~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
.+ ..+....+.+.+.+.+. +.+++.+ ++++++.+++.+.+.. ++..+.+|.||-|.|.+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 00 01222334334433332 3466666 8899988777777765 567899999999999653
No 309
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.61 E-value=8.1e-07 Score=94.86 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=76.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-c------------------------------eeeccC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-G------------------------------QLMTTT- 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g------------------------------~~~~~~- 140 (540)
..+||+||||||+|+++|..|++.|++|+|||+.+.....+ + ......
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 45899999999999999999999999999999976321000 0 000000
Q ss_pred ccccCC-------CCCCC--CChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE---CC-eEEEecEEEEcc
Q 009224 141 EVENFP-------GFPDG--ITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS---GE-RKVKCHSIVFAT 205 (540)
Q Consensus 141 ~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lviAt 205 (540)
....+. .++.. .....+...+.+.+.+. +++++.+ +++.+..+++.+++.. ++ .++++|+||.|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 000000 00101 23344556666667665 6888877 8888887777766543 23 368999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|.+.
T Consensus 182 G~~S 185 (547)
T PRK08132 182 GARS 185 (547)
T ss_pred CCCc
Confidence 9865
No 310
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.60 E-value=9.1e-07 Score=93.19 Aligned_cols=116 Identities=27% Similarity=0.429 Sum_probs=75.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeecc-Cc--------------c-----------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTT-TE--------------V----------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~-~~--------------~----------- 142 (540)
..+||||||+|.||++||+.+++.|.+|+|+||....+ ..+|.+... .. .
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999976522 011111100 00 0
Q ss_pred ---------------------cc--C-----C-CC-------CC--CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee
Q 009224 143 ---------------------EN--F-----P-GF-------PD--GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK 183 (540)
Q Consensus 143 ---------------------~~--~-----~-~~-------~~--~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~ 183 (540)
.. + + +. |. ...+..+.+.+.+.+++.+++++.+ .|+.+..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 00 0 0 00 00 0122356777778888889999887 77777655
Q ss_pred CCc---EEEEECC---eEEEecEEEEccCCC
Q 009224 184 SNP---FTVKSGE---RKVKCHSIVFATGAT 208 (540)
Q Consensus 184 ~~~---~~v~~~~---~~~~~d~lviAtG~~ 208 (540)
++. +.+...+ ..+.++.||+|||..
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 443 3343322 368899999999964
No 311
>PRK07236 hypothetical protein; Provisional
Probab=98.60 E-value=2.9e-07 Score=93.89 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=70.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-CCccee-eccCcc--------c-----cCC----------C-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-VPGGQL-MTTTEV--------E-----NFP----------G- 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-~~gg~~-~~~~~~--------~-----~~~----------~- 147 (540)
..+|+|||||++|+++|..|++.|++|+|+|+.+... ..|..+ ...... . ..+ +
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 4799999999999999999999999999999976321 112111 111000 0 000 0
Q ss_pred ------CCC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 148 ------FPD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 148 ------~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
.+. ......+.+.+.+.+ .+++++.+ +|+.+..+++.+++.. ++.++++|.||.|-|...
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 000 011222222222211 13567776 7889988777777655 567899999999999754
No 312
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.60 E-value=8.9e-07 Score=92.56 Aligned_cols=99 Identities=18% Similarity=0.299 Sum_probs=77.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. |. ...++...+.+.+++.|++++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-------AL--------PN-----EDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC-------cC--------Cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996443 11 11 124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE---CC--eEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++.+.+.. ++ ..+.+|.||+|+|.+|+..
T Consensus 232 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 232 TGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred ECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 87 7888877665554432 33 4799999999999988754
No 313
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.60 E-value=1.9e-07 Score=80.47 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=77.3
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..++..|-+...++.+ ++++||-+.-..|+.|...++.++..+- ..+|++||++..|-++.+++|.-+|++.+|+||+
T Consensus 71 v~~Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 71 VASEKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred eccHHHHHHHhhcCce-EEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEEcCE
Confidence 3446666676666664 7889999999999999999999999997 4899999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q 009224 519 MIRTVPGVK 527 (540)
Q Consensus 519 ~~~~~~g~~ 527 (540)
.++++.|+.
T Consensus 149 ~~D~iVGF~ 157 (211)
T KOG1672|consen 149 TVDYVVGFT 157 (211)
T ss_pred EEEEEeeHh
Confidence 999999874
No 314
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.60 E-value=2.2e-07 Score=70.85 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=52.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc-----CCCcccEEEEEeCCeEEEEeeCCCCHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA-----GIMGTPCVQFFKNKEMIRTVPGVKMKKE 531 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 531 (540)
+..||++||++|+.+++.++++ .+.|..+|++++++..+.+ ++.++|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5679999999999999988765 3556678988887766653 88999997 467885433 355556
Q ss_pred HHHHHH
Q 009224 532 YREFIE 537 (540)
Q Consensus 532 ~~~~i~ 537 (540)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 766664
No 315
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.59 E-value=4.6e-07 Score=92.62 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +.+. ....+..+.+.+.+++.|++++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~l~~----------------~~~~~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT---VMGR----------------NAPPPVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc---chhh----------------hcCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996543 1110 1124566778888889999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +++.++. ++.+.+.. ++..+.+|.||+|+|..|+.
T Consensus 205 ~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 205 LNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred eCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 87 7777765 34444443 56789999999999998864
No 316
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=1.2e-06 Score=91.56 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=77.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..+++.|.+|+|+|+.+. + . +. ...++.+.+.+.+++.|+++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~---i----l--------~~-----~d~~~~~~l~~~l~~~gV~i 232 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR---I----C--------PG-----TDTETAKTLQKALTKQGMKF 232 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC---C----C--------CC-----CCHHHHHHHHHHHHhcCCEE
Confidence 357999999999999999999999999999997543 1 1 11 12456677888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE------CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS------GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~------~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..+..+++.+.+.. ++..+.+|.|++|+|..|+..
T Consensus 233 ~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 233 KLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 988 7888876655554432 235799999999999988754
No 317
>PRK06370 mercuric reductase; Validated
Probab=98.57 E-value=7.4e-07 Score=93.11 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~GV~i~ 230 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR---L----L--------PR-----EDEDVAAAVREILEREGIDVR 230 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC---C----C--------cc-----cCHHHHHHHHHHHHhCCCEEE
Confidence 47999999999999999999999999999997543 1 1 11 124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.+++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 231 ~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 231 LNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred eCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 87 8888887665544332 345799999999999998764
No 318
>PRK14694 putative mercuric reductase; Provisional
Probab=98.57 E-value=8.2e-07 Score=92.84 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=79.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++++... . + ....++...+.+.+++.|++++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~--------l--------~-----~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRV--------L--------S-----QEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC--------C--------C-----CCCHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999985221 0 0 1234667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+..++..+.+|.||+|+|..|+...
T Consensus 237 ~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 237 KQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred eCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCC
Confidence 97 88888877666666655567999999999999987653
No 319
>PRK06116 glutathione reductase; Validated
Probab=98.57 E-value=8.8e-07 Score=92.25 Aligned_cols=100 Identities=17% Similarity=0.290 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~~~~~~~~l~~~L~~~GV~i~ 226 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA---P----L--------RG-----FDPDIRETLVEEMEKKGIRLH 226 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC---C----c--------cc-----cCHHHHHHHHHHHHHCCcEEE
Confidence 47999999999999999999999999999996543 1 1 01 124677788888999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|..++.+++. +.+.. ++..+.+|.||+|+|..|+...
T Consensus 227 ~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 227 TNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred CCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 87 78888865544 55554 5678999999999999887653
No 320
>PRK06185 hypothetical protein; Provisional
Probab=98.56 E-value=7.8e-07 Score=91.50 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=74.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-C-cceeec------------------------------cC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-P-GGQLMT------------------------------TT 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~-gg~~~~------------------------------~~ 140 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+.... . +..+.. ..
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 458999999999999999999999999999998643110 0 000000 00
Q ss_pred c-c--ccCCCC------CCCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcE---EEEE-CC-eEEEecEEEEc
Q 009224 141 E-V--ENFPGF------PDGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPF---TVKS-GE-RKVKCHSIVFA 204 (540)
Q Consensus 141 ~-~--~~~~~~------~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~---~v~~-~~-~~~~~d~lviA 204 (540)
. . ..+... .......++.+.+.+.+.+. +++++.+ +++.+..+++.+ .+.. ++ ..+++|.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 0 000000 00123345666666666664 7898876 888887766654 3332 34 47999999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
.|...
T Consensus 165 dG~~S 169 (407)
T PRK06185 165 DGRHS 169 (407)
T ss_pred CCCch
Confidence 99764
No 321
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.56 E-value=8.2e-07 Score=92.86 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . + ....++.+.+.+.+++.|+++
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~----l--------~-----~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR---L----L--------S-----FLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC---c----C--------C-----cCCHHHHHHHHHHHHHcCCEE
Confidence 357999999999999999999999999999997543 1 1 1 123567778888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.++.+++.+.+.. ++..+.+|.|++|+|.+|+..
T Consensus 234 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 234 RHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 987 8888887666666554 566799999999999998764
No 322
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.56 E-value=3.7e-07 Score=86.15 Aligned_cols=96 Identities=17% Similarity=0.292 Sum_probs=74.8
Q ss_pred HHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.+.+.+. ...++|+||.+.++.|..+...|..|+.+|. .++|++|..+..+ +..+|.+..+||+++|++|..
T Consensus 133 ~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l 210 (265)
T PF02114_consen 133 GEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDL 210 (265)
T ss_dssp HHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEE
T ss_pred hhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEEEEEECCEE
Confidence 45566666544 3479999999999999999999999999998 5999999998776 788999999999999999999
Q ss_pred EEEeeCC-------CCHHHHHHHHHhh
Q 009224 520 IRTVPGV-------KMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~-------~~~~~~~~~i~~~ 539 (540)
+..+.|. .+.++|+.||.++
T Consensus 211 ~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 211 IGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9988764 2456677777653
No 323
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.56 E-value=9e-07 Score=91.93 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=80.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. |. ...++...+.+.+++.|+++
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~-------~l--------~~-----~~~~~~~~l~~~l~~~gV~v 216 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASL-------FL--------PR-----EDRDIADNIATILRDQGVDI 216 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC-------CC--------CC-----cCHHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999999999996432 11 11 12466777888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.+++.+.+..++..+.+|.|++|+|.+|+..
T Consensus 217 ~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 217 ILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA 257 (441)
T ss_pred EeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence 987 7888887666677765555689999999999998764
No 324
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.55 E-value=1.2e-06 Score=91.69 Aligned_cols=101 Identities=12% Similarity=0.223 Sum_probs=79.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++...+.+.+++.|+++
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~----l--------~~-----~d~~~~~~~~~~l~~~gi~i 241 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA---F----L--------AA-----ADEQVAKEAAKAFTKQGLDI 241 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc---c----C--------Cc-----CCHHHHHHHHHHHHHcCcEE
Confidence 347999999999999999999999999999997543 1 1 01 12566777888888999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-C--C--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-G--E--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~--~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ +|+.++.+++.+.+.. + + ..+.+|.|++|+|..|+...
T Consensus 242 ~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 242 HLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 987 8888887766655542 2 2 46999999999999987653
No 325
>PLN02507 glutathione reductase
Probab=98.54 E-value=1.2e-06 Score=91.90 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=80.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~---~----l--------~~-----~d~~~~~~l~~~l~~~GI~i~ 262 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL---P----L--------RG-----FDDEMRAVVARNLEGRGINLH 262 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC---c----C--------cc-----cCHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999996543 1 0 01 224677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|..++.+++.+.+.. ++..+.+|.|++|+|.+|+...
T Consensus 263 ~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 263 PRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred eCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 98 7888887666666654 4567999999999999987653
No 326
>PRK07121 hypothetical protein; Validated
Probab=98.54 E-value=6.1e-06 Score=86.89 Aligned_cols=58 Identities=19% Similarity=0.421 Sum_probs=43.8
Q ss_pred HhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc-cEEEEecccc-cCcccc
Q 009224 285 VFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA-KGLFYGIGHS-PNSQLL 344 (540)
Q Consensus 285 ~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~-p~~~~~ 344 (540)
.+++.|+++++++.++++..++++++.+|.... ++....+.+ +.||+|+|-- -|.+++
T Consensus 186 ~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 186 RAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 346679999999999999877667888888753 344567888 9999999953 444444
No 327
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.53 E-value=1.3e-06 Score=86.04 Aligned_cols=48 Identities=33% Similarity=0.401 Sum_probs=42.2
Q ss_pred CCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 354 GYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 354 g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
-.+.+|+.+ +|+.+|+|++||.++.. +.+..|...|..+|..|++...
T Consensus 437 ~ri~~d~~~-~t~i~gLy~aGdGAG~a-rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 437 VRIKVDEDL-STSIKGLYPAGDGAGLA-RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eeEeecccc-eeeecceEEcccccccc-chhHHHhhhhHHHHHHHHHHhc
Confidence 458889885 99999999999999984 8999999999999999987653
No 328
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.53 E-value=8.6e-07 Score=92.26 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. +.. . ....++.+.+.+.+++.|++++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~-------~l~-----------~-~~~~~~~~~l~~~l~~~gI~v~ 209 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR-------ILP-----------D-SFDKEITDVMEEELRENGVELH 209 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc-------cCc-----------h-hcCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996442 110 0 1135677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.+++...+..++..+.+|.||+|+|..|+..
T Consensus 210 ~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~ 249 (444)
T PRK09564 210 LNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTE 249 (444)
T ss_pred cCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHH
Confidence 87 7888876544444555666899999999999887643
No 329
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.52 E-value=3.2e-07 Score=83.87 Aligned_cols=109 Identities=27% Similarity=0.322 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcccc------------------------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVEN------------------------------ 144 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~------------------------------ 144 (540)
.+|+|||+|+||++||..|+..|.+|+|+||..- .||++........
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G---vGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~ 78 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRG---VGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD 78 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC---cccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee
Confidence 4799999999999999999999999999999543 4444332211000
Q ss_pred --------C-----CCCCCCC--ChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccC
Q 009224 145 --------F-----PGFPDGI--TGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATG 206 (540)
Q Consensus 145 --------~-----~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG 206 (540)
+ +..++.. .++--+..+.+++ ..+.+++++ +|+.+...++.|++.. +.+...+|.||||.=
T Consensus 79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~P 157 (331)
T COG3380 79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIP 157 (331)
T ss_pred eccccccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecC
Confidence 0 0000000 0000011111111 124556655 8888888889999987 345678999999875
Q ss_pred C
Q 009224 207 A 207 (540)
Q Consensus 207 ~ 207 (540)
.
T Consensus 158 A 158 (331)
T COG3380 158 A 158 (331)
T ss_pred C
Confidence 3
No 330
>PLN02985 squalene monooxygenase
Probab=98.52 E-value=1.4e-06 Score=91.43 Aligned_cols=120 Identities=23% Similarity=0.341 Sum_probs=74.8
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC--------CCcce-----------ee-------------
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG--------VPGGQ-----------LM------------- 137 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~--------~~gg~-----------~~------------- 137 (540)
.....+||+|||||++|+++|..|++.|++|+|+|+..... .+++. +.
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 34556899999999999999999999999999999864211 01110 00
Q ss_pred ccCc--cccCCC----CC-----CCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCc---EEEEE-CCe--EEEec
Q 009224 138 TTTE--VENFPG----FP-----DGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNP---FTVKS-GER--KVKCH 199 (540)
Q Consensus 138 ~~~~--~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~---~~v~~-~~~--~~~~d 199 (540)
.... ...++. .+ ......++.+.+.+.+.+. ++++..++++.+..+++. +++.. +++ ++.+|
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~Ad 198 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAP 198 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECC
Confidence 0000 001110 00 0123355667777777665 688888888877655443 33332 333 45689
Q ss_pred EEEEccCCCC
Q 009224 200 SIVFATGATA 209 (540)
Q Consensus 200 ~lviAtG~~~ 209 (540)
.||.|.|...
T Consensus 199 LVVgADG~~S 208 (514)
T PLN02985 199 LTVVCDGCYS 208 (514)
T ss_pred EEEECCCCch
Confidence 9999999764
No 331
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.52 E-value=2e-06 Score=81.92 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=106.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------ 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------ 277 (540)
...|+|||+|+.|+-+|..|++.|.+|.++++...+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 35699999999999999999999999999998754310
Q ss_pred --cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc------CCceEEEEccEEEEecccccCcc-cccc--
Q 009224 278 --SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD------TGEESVLEAKGLFYGIGHSPNSQ-LLQG-- 346 (540)
Q Consensus 278 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~------~g~~~~i~~D~vi~a~G~~p~~~-~~~~-- 346 (540)
...+.++ ..+.|++++.++.+.++..++++++.++.+.... ..+..++.++.||.|+|...... .+..
T Consensus 105 ~l~~~L~~~-A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 105 EAAAKLAAA-AIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred HHHHHHHHH-HHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 0111222 3557999999999999876555577777664311 11346799999999999644321 1110
Q ss_pred ---c------eecc-CCCCEEeCCCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHHhc
Q 009224 347 ---Q------VELD-SSGYVIVEEGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYLVN 404 (540)
Q Consensus 347 ---~------~~~~-~~g~i~vd~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l~~ 404 (540)
. -+++ ..|--.|=++. ..-.||+|++|=+++ +.++.+..+ ..+|+.||..|.+.|+.
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~t-~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVENT-GEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred CCcccccCCccccccCchHHHHHhcC-CeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 0 0011 11111111222 234799999998875 224555555 45899999999988864
No 332
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.52 E-value=1.1e-06 Score=91.36 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=78.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..+++.|.+|+++++.+. +. +. ...++...+.+.+++.|++++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL-------IL--------RG-----FDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC-------CC--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999996443 11 11 124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++..++.+.+.. ++..+.+|.||+|+|..|+..
T Consensus 226 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 226 PQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred eCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 88 7888876555555554 566899999999999988754
No 333
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.51 E-value=7.5e-07 Score=89.80 Aligned_cols=106 Identities=17% Similarity=0.317 Sum_probs=66.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcc--eeeccC-ccc-------------cCCC-------C--
Q 009224 96 NVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGG--QLMTTT-EVE-------------NFPG-------F-- 148 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg--~~~~~~-~~~-------------~~~~-------~-- 148 (540)
||+|||||+||+++|..|++. |++|+|+|+.+. .++ .|.... ... .++. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~---~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~ 77 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT---IGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRR 77 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC---CCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhh
Confidence 799999999999999999987 999999999663 222 111100 000 0000 0
Q ss_pred ----C-CCCChHHHHHHHHHHHHHhCCEEEE-eeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 149 ----P-DGITGPDLMDRMRRQAERWGAELHQ-EDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 149 ----~-~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
+ ..+...++.+.+.+.+ +..++. .+|+.++ .+.+++. ++.++.+|.||-|.|..+.
T Consensus 78 ~l~~~Y~~I~r~~f~~~l~~~l---~~~i~~~~~V~~v~--~~~v~l~-dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 78 KLKTAYRSMTSTRFHEGLLQAF---PEGVILGRKAVGLD--ADGVDLA-PGTRINARSVIDCRGFKPS 139 (370)
T ss_pred hcCCCceEEEHHHHHHHHHHhh---cccEEecCEEEEEe--CCEEEEC-CCCEEEeeEEEECCCCCCC
Confidence 0 0122344444444333 222444 4777774 4457774 7889999999999997754
No 334
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.51 E-value=9.7e-07 Score=91.34 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=76.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+++++.+. + .. + ....++.+.+.+.+++.|++++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~----~~-------~-----~~~~~~~~~~~~~l~~~gV~v~ 197 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER---I----LN-------K-----LFDEEMNQIVEEELKKHEINLR 197 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc---c----Cc-------c-----ccCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 1 00 0 1124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.++..+.+ .++..+.+|.||+|+|..|...
T Consensus 198 ~~~~v~~i~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 198 LNEEVDSIEGEERVKVF-TSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred eCCEEEEEecCCCEEEE-cCCCEEEeCEEEECCCccCCHH
Confidence 87 78888765442122 3667899999999999987653
No 335
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.51 E-value=1e-06 Score=66.74 Aligned_cols=72 Identities=33% Similarity=0.529 Sum_probs=56.1
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeC-CCCHHHHHHHHH
Q 009224 459 LYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPG-VKMKKEYREFIE 537 (540)
Q Consensus 459 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~~~~~i~ 537 (540)
.+++++|++|..+...++++..+++ +.+-.+|..+.+++ .+|+|.++|+++ .||+. ++.| ..+.++|.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalv--Ing~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALV--INGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEE--ETTEE--EEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEE--ECCEE--EEEecCCCHHHHHHHhC
Confidence 3468889999999999999999994 66666777555566 999999999974 48875 5678 788899999885
No 336
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.51 E-value=1.8e-06 Score=90.40 Aligned_cols=116 Identities=23% Similarity=0.426 Sum_probs=74.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC---CC---CCcceeeccCcc---------------------cc-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA---GG---VPGGQLMTTTEV---------------------EN- 144 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~---~~---~~gg~~~~~~~~---------------------~~- 144 (540)
..+||||||+|+||++||..|++.|.+|+|+||... ++ ..+|........ ..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 347999999999999999999999999999999763 22 112210000000 00
Q ss_pred -------------------C--CCCC------CCC-----------ChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC
Q 009224 145 -------------------F--PGFP------DGI-----------TGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN 185 (540)
Q Consensus 145 -------------------~--~~~~------~~~-----------~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~ 185 (540)
+ .+.+ ... .+..+...+.+.+++.|++++.+ +|+.+..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 0 0000 000 02456777777888889999887 7888776555
Q ss_pred cEE-EEE---C--CeEEEecEEEEccCCC
Q 009224 186 PFT-VKS---G--ERKVKCHSIVFATGAT 208 (540)
Q Consensus 186 ~~~-v~~---~--~~~~~~d~lviAtG~~ 208 (540)
.+. +.. + ...++++.||+|||..
T Consensus 163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 163 RFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred eEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 432 222 1 3468899999999963
No 337
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.51 E-value=1.6e-06 Score=88.69 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=72.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CCCcceeeccC------------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GVPGGQLMTTT------------------------------ 140 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~~gg~~~~~~------------------------------ 140 (540)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.. ..++.....+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 378999999999999999999999999999997641 10111110000
Q ss_pred cc--ccCCCCC--C---CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe-eCCcEEEEE--CC--eEEEecEEEEccCC
Q 009224 141 EV--ENFPGFP--D---GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV-KSNPFTVKS--GE--RKVKCHSIVFATGA 207 (540)
Q Consensus 141 ~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~-~~~~~~v~~--~~--~~~~~d~lviAtG~ 207 (540)
.. ..++... . .....++.+.+.+...+.|++++.+ +++.+.. +++...|.. ++ .++++|.||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence 00 0000000 0 0113445555666666778998887 6777754 344443432 44 36899999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 162 ~S 163 (392)
T PRK08243 162 HG 163 (392)
T ss_pred CC
Confidence 54
No 338
>PRK14727 putative mercuric reductase; Provisional
Probab=98.50 E-value=1.5e-06 Score=90.97 Aligned_cols=99 Identities=17% Similarity=0.276 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++... . +. ...++.+.+.+.+++.|++++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~--------l--------~~-----~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL--------L--------FR-----EDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC--------C--------Cc-----chHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999985211 1 01 124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+..+...+.+|.||+|+|..|+...
T Consensus 247 ~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 247 NNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHD 287 (479)
T ss_pred cCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccC
Confidence 87 78888776667777665567999999999999987653
No 339
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.50 E-value=1.1e-06 Score=91.31 Aligned_cols=114 Identities=26% Similarity=0.440 Sum_probs=74.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCC----CCcceeecc-Ccc---------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGG----VPGGQLMTT-TEV--------------------------- 142 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~----~~gg~~~~~-~~~--------------------------- 142 (540)
||||||||.||++||..|++.| .+|+|+||.+..+ ..+|.+... ...
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 9999999976532 112211100 000
Q ss_pred --------------ccCC-CC---------------CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC
Q 009224 143 --------------ENFP-GF---------------PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKS 184 (540)
Q Consensus 143 --------------~~~~-~~---------------~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~ 184 (540)
.++. +. +. ......+...+.+.+++.|++++.+ +|+.+..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 0000 00 00 0123467788888888999999887 788887643
Q ss_pred -C---cEEEEE-CCe--EEEecEEEEccCCCC
Q 009224 185 -N---PFTVKS-GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 185 -~---~~~v~~-~~~--~~~~d~lviAtG~~~ 209 (540)
+ ++.+.. ++. .+.++.||+|||...
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 2 233433 222 467899999999643
No 340
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.50 E-value=1.6e-06 Score=90.39 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ .|+.++. ++.+.|.++...+.+|+||+|||+.
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDGQVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCcEEECCEEEEccccc
Confidence 344555556677789999887 7888874 4456676666689999999999975
No 341
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.50 E-value=1.5e-07 Score=69.37 Aligned_cols=38 Identities=39% Similarity=0.598 Sum_probs=33.5
Q ss_pred EECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 99 IIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 99 VIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
|||||++||++|..|++.|++|+|+|+.+. +||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~---~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR---LGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS---SSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc---cCcceeEE
Confidence 899999999999999999999999999988 77776543
No 342
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.49 E-value=1.6e-06 Score=90.09 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=77.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~---i----l--------~~-----~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER---V----L--------RS-----FDSMISETITEEYEKEGINVH 225 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC---C----C--------cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 47999999999999999999999999999997543 1 1 01 134667788888999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEEE-CC-eEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVKS-GE-RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~~-~~-~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .++.++.+... +.+.. ++ ..+.+|.|++|+|..|+..
T Consensus 226 ~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 226 KLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 88 78888765433 44443 44 5799999999999998764
No 343
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.49 E-value=2.2e-06 Score=88.21 Aligned_cols=54 Identities=13% Similarity=0.275 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--C----CeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--G----ERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~----~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.++..++.+++.. + +..+++|+||+|+|..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 344556667778889999987 8999987777776543 2 2368999999999976
No 344
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.49 E-value=1.5e-06 Score=90.62 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++++.+. +. + ....+....+.+.+++.|++++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-------~l-----------~--~~d~~~~~~l~~~L~~~gV~i~ 236 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-------VL-----------P--GEDADAAEVLEEVFARRGMTVL 236 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-------CC-----------C--CCCHHHHHHHHHHHHHCCcEEE
Confidence 46899999999999999999999999999996443 11 1 1124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+.. ++..+.+|.|++|+|..|+...
T Consensus 237 ~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 237 KRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred cCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 87 7888876666665553 5678999999999999987653
No 345
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.48 E-value=7.9e-07 Score=76.55 Aligned_cols=84 Identities=14% Similarity=0.270 Sum_probs=68.4
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCcc-
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMGT- 508 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~~- 508 (540)
++++++.|| +.||+.|....+.+.++.+++.+ ++.++.|..+. +..+++.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 688999999 68999999999999999998853 57788776653 2356677888887
Q ss_pred --------cEEEEE-eCCeEEEEeeCCCCHHHHHHHH
Q 009224 509 --------PCVQFF-KNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 509 --------Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i 536 (540)
|+.+++ ++|+++..+.|....+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 888888 6799999999998887777765
No 346
>PRK07846 mycothione reductase; Reviewed
Probab=98.47 E-value=2.8e-06 Score=88.20 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=75.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+ +.+++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~---l----l--------~~-----~d~~~~~~l~~l~-~~~v~i~ 224 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR---L----L--------RH-----LDDDISERFTELA-SKRWDVR 224 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHH-hcCeEEE
Confidence 47899999999999999999999999999997543 1 1 01 1234455554433 5689988
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~i 214 (540)
.+ +++.++.+++.+.+.. ++..+.+|.|++|+|.+|+...+
T Consensus 225 ~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 225 LGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred eCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence 87 7888887666555554 56789999999999999876543
No 347
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.47 E-value=6.1e-07 Score=75.18 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=57.2
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc---CCCcccEEEEE-eCCeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA---GIMGTPCVQFF-KNKEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~i~~~Pt~~~~-~~g~~~~ 521 (540)
..+....++..++.|..+|||.|++..|.+.++++..+ ++.+-.+.-|+++++.++| +..++|+++++ ++|+++.
T Consensus 34 ~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 34 EKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp HHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEE
T ss_pred HHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeE
Confidence 33444456678999999999999999999999999876 6888888888888887765 56889999999 5578887
Q ss_pred EeeCCCCHHHHHHHHHh
Q 009224 522 TVPGVKMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~ 538 (540)
++... +. .+.+++++
T Consensus 113 ~wger-P~-~~~~~~~~ 127 (129)
T PF14595_consen 113 RWGER-PK-EVQELVDE 127 (129)
T ss_dssp EEESS--H-HHH-----
T ss_pred EEcCC-CH-HHhhcccc
Confidence 76554 32 35555554
No 348
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.47 E-value=1.1e-06 Score=90.53 Aligned_cols=98 Identities=28% Similarity=0.475 Sum_probs=81.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||+|++|+.+|..|+++|++|+++|+.+. +++++.. .++.+.+.+.++++|++++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~---~~~~~~~----------------~~~~~~~~~~l~~~gi~~~ 196 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR---LGGQLLD----------------PEVAEELAELLEKYGVELL 196 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccc---cchhhhh----------------HHHHHHHHHHHHHCCcEEE
Confidence 47999999999999999999999999999998776 5544321 4778889999999999998
Q ss_pred Ee-eEEEEEeeCCcEE----EEECCeEEEecEEEEccCCCCC
Q 009224 174 QE-DVEFIDVKSNPFT----VKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~----v~~~~~~~~~d~lviAtG~~~~ 210 (540)
.+ .+..++...+... +...+..+++|.+++++|.+|+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 197 LGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred eCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 87 7788887765432 3337788999999999999885
No 349
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.47 E-value=2e-06 Score=87.68 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=69.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CCCcceeeccCcc-------------------c--------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GVPGGQLMTTTEV-------------------E-------- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~~gg~~~~~~~~-------------------~-------- 143 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. ...+......... .
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 379999999999999999999999999999997641 1011111110000 0
Q ss_pred -----cCCCCCC-----CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe-eC--CcEEEEECCe--EEEecEEEEccCC
Q 009224 144 -----NFPGFPD-----GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV-KS--NPFTVKSGER--KVKCHSIVFATGA 207 (540)
Q Consensus 144 -----~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~-~~--~~~~v~~~~~--~~~~d~lviAtG~ 207 (540)
.+..... ......+...+.+.+.+.++.++.+ +++.+.. +. ..+++..++. ++++|.||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence 0000000 0112344555666666778877776 4444422 33 3444432453 6899999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
+.
T Consensus 162 ~S 163 (390)
T TIGR02360 162 HG 163 (390)
T ss_pred ch
Confidence 54
No 350
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=1.5e-05 Score=85.40 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=41.7
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
.+.|++++.++.+.++..+++|++.++.+.+..++....+.++.||+|+|-.
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 4578999999999998876567888888766555666678899999999953
No 351
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.47 E-value=1.6e-06 Score=81.89 Aligned_cols=118 Identities=22% Similarity=0.384 Sum_probs=79.3
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcc------------------------------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG------------------------------------ 134 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg------------------------------------ 134 (540)
+.+..+|+|||||.-|+++|++|+++|.++.|+|+.+..-.-|.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 44568999999999999999999999999999998543320000
Q ss_pred --------eeeccCc---------------------------cccCCC---CC-----------CCCChHHHHHHHHHHH
Q 009224 135 --------QLMTTTE---------------------------VENFPG---FP-----------DGITGPDLMDRMRRQA 165 (540)
Q Consensus 135 --------~~~~~~~---------------------------~~~~~~---~~-----------~~~~~~~~~~~~~~~~ 165 (540)
.+..... -..||+ ++ ..+.....+..++..+
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 0000000 012231 11 1233456777888889
Q ss_pred HHhCCEEEEe-eEEEEE---eeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 166 ERWGAELHQE-DVEFID---VKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 166 ~~~~v~~~~~-~v~~i~---~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
++.|+.++.+ .|+.+. .++..+.|.+ ++..+.++.+|+++|++
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 9999999988 555544 2444556655 66679999999999986
No 352
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.47 E-value=2.2e-06 Score=90.25 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=34.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
...+||+|||||..|+++|+.|+++|++|+|+|+.+.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~ 41 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA 41 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 44589999999999999999999999999999997654
No 353
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.47 E-value=1e-05 Score=87.03 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=41.7
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
++.||+++.++.++++..+++|++.++...+..++....+.++.||+|||-
T Consensus 177 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 457999999999999876556789998876656677778899999999963
No 354
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.46 E-value=2.2e-06 Score=87.94 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=74.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------------------------C--c--
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------------------------T--E-- 141 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------------------------~--~-- 141 (540)
.+|+|||||+||+++|..|++.|++|+|+|+.+.....|..+... . .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 689999999999999999999999999999865421001000000 0 0
Q ss_pred -cc-----cCC----CCCC-CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE----CCeEEEecEEEEc
Q 009224 142 -VE-----NFP----GFPD-GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFA 204 (540)
Q Consensus 142 -~~-----~~~----~~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviA 204 (540)
.. ... +.+. .....++.+.+.+.+.+. +++++.+ +++.++.+++.+++.. ++..+.+|.||-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence 00 000 0000 123345666666666553 7888877 8888887777776653 3357899999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
-|...
T Consensus 163 DG~~S 167 (400)
T PRK06475 163 DGVWS 167 (400)
T ss_pred CCccH
Confidence 99753
No 355
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.46 E-value=6.6e-06 Score=88.51 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc
Q 009224 288 NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
+.||+++.++.+.++..++++++.++...+..+|....+.++.||+|||--
T Consensus 199 ~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 199 KHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred hCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 468999999999998766557898988766556777788999999999943
No 356
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.45 E-value=1.9e-06 Score=90.76 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
..+||+|||||..|+++|+.|+++|++|+|+|+.+.+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4589999999999999999999999999999997653
No 357
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.45 E-value=2.9e-06 Score=88.54 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=76.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..++|+|||||+.|+.+|..+... |.+|+|+|+.+. +. +. ...++.+.+.+.+++.|
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~-------il--------~~-----~d~~~~~~l~~~L~~~G 245 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM-------IL--------RG-----FDSTLRKELTKQLRANG 245 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc-------cc--------cc-----cCHHHHHHHHHHHHHcC
Confidence 347899999999999999876654 999999996543 11 11 23577788889999999
Q ss_pred CEEEEe-eEEEEEeeCCc-EEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ .++.++..++. ..+.. ++..+.+|.|++|+|.+|+..
T Consensus 246 I~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 246 INIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 999998 67888754332 33433 566899999999999988764
No 358
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.45 E-value=2.3e-06 Score=88.26 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCEEeCCCccccCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHH
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l 402 (540)
.|.+.+|... ++..||+||+|.++. .. -..+..++.-|+.|+.++...+
T Consensus 331 ~GGi~vd~~~-~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 331 MGGIKVDLNS-KTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred cCCEEECCCc-cccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 5778899888 799999999999973 21 1345677778999999887654
No 359
>PRK13748 putative mercuric reductase; Provisional
Probab=98.44 E-value=2.3e-06 Score=91.85 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=78.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++... . +. ...++...+.+.+++.|++++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL--------F--------FR-----EDPAIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc--------c--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996321 1 01 124677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..++.+++.+.+..++..+.+|.|++|+|..|+..
T Consensus 329 ~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 329 EHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR 368 (561)
T ss_pred cCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence 87 7888876666666665555799999999999998764
No 360
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.44 E-value=2e-06 Score=88.69 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=69.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCCCcceeeccC----------------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGVPGGQLMTTT---------------------------------- 140 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~~gg~~~~~~---------------------------------- 140 (540)
+|+|||||++||++|..|+++| ++|+|+|+.+.....|..+....
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 59999999755321111110000
Q ss_pred --ccccC------CCCCC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 141 --EVENF------PGFPD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 141 --~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
....+ ++.+. .+...++.+.+.+.+. ...++.+ +|++++..++.+++.. ++.++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 00000 00000 1223344444443332 3445555 8888888777777764 567899999999999764
No 361
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.44 E-value=2.3e-06 Score=78.59 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=68.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----------CCHHHHHHcCCCcccEEEEE-eCC-e
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----------EDPEIAEAAGIMGTPCVQFF-KNK-E 518 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~i~~~Pt~~~~-~~g-~ 518 (540)
.++.-+++||.+.|++|+.+.|.+..++++|+ +.++-|++| .+..++++++|..+|+++++ .++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 36677999999999999999999999999995 666666665 45789999999999999998 444 5
Q ss_pred EEEEeeCCCCHHHHHHHH
Q 009224 519 MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i 536 (540)
......|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 556678999999887754
No 362
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.44 E-value=1.2e-05 Score=86.44 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=42.4
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
++.||+++.++.++++..++++++.++...+..++....+.++.||+|||--
T Consensus 160 ~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 4578999999999998876557899998766556766788999999999943
No 363
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.43 E-value=1.7e-06 Score=89.56 Aligned_cols=96 Identities=13% Similarity=0.214 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+. + .. ....++...+.+.+++.|++++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---l----~~-------------~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK---I----NK-------------LMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc---c----ch-------------hcCHHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999999999997543 1 10 1124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++. ..+.+. ++..+.+|.|++|+|.+|+..
T Consensus 208 ~~~~v~~i~~--~~v~~~-~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 208 LNEEIDAING--NEVTFK-SGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred ECCeEEEEeC--CEEEEC-CCCEEEeCEEEECcCCCcChH
Confidence 87 7777763 334443 566799999999999988754
No 364
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.43 E-value=1.5e-05 Score=85.29 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=42.4
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
.+.||+++.++.++++..+++|++.++...+..++....+.++.||+|||-
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 356899999999999987656889999876656677678889999999984
No 365
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.43 E-value=2.2e-06 Score=88.87 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHH----cCCceEEEcCCCCCCCC-------cc-----eee-cc------------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAAR----ANLKPVVFEGYQAGGVP-------GG-----QLM-TT------------------ 139 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~----~g~~v~lie~~~~~~~~-------gg-----~~~-~~------------------ 139 (540)
+||+|||||++|+++|..|++ .|++|+|||+.+..... .+ ... ..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 79999999994310000 00 000 00
Q ss_pred ------------Ccc---ccCCCC---C---CCCChHHHHHHHHHHHHHhC---CEEEEe-eEEEEEee-------CCcE
Q 009224 140 ------------TEV---ENFPGF---P---DGITGPDLMDRMRRQAERWG---AELHQE-DVEFIDVK-------SNPF 187 (540)
Q Consensus 140 ------------~~~---~~~~~~---~---~~~~~~~~~~~~~~~~~~~~---v~~~~~-~v~~i~~~-------~~~~ 187 (540)
... ..+... + .......+...+.+.+.+.+ ++++.+ +++.++.. ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 000 000000 0 01223456666777777765 888877 78888642 3456
Q ss_pred EEEE-CCeEEEecEEEEccCCCC
Q 009224 188 TVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 188 ~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
++.. +++++++|.||-|-|...
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCC
Confidence 6654 667899999999999864
No 366
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=3.4e-06 Score=88.14 Aligned_cols=99 Identities=15% Similarity=0.292 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++. ++++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-------il--------~~-----~d~~~~~~~~~~l~~~-v~i~ 232 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-------VI--------PA-----ADKDIVKVFTKRIKKQ-FNIM 232 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-------CC--------Cc-----CCHHHHHHHHHHHhhc-eEEE
Confidence 47999999999999999999999999999997543 11 11 1246667777778777 8888
Q ss_pred Ee-eEEEEEeeCCcEEEEE-C----CeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-G----ERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~----~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++..++.+.+.. + ..++.+|.||+|+|.+|+...
T Consensus 233 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 233 LETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred cCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCc
Confidence 87 7888876655555542 1 246999999999999987653
No 367
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.42 E-value=1e-06 Score=64.07 Aligned_cols=60 Identities=30% Similarity=0.698 Sum_probs=52.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCC
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNK 517 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g 517 (540)
++.||.+||++|+.+.+.+.++ +....++.+..+|++...+..+ ++++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4445579999999998887655 8899999999999877
No 368
>PRK07538 hypothetical protein; Provisional
Probab=98.41 E-value=4e-06 Score=86.35 Aligned_cols=114 Identities=21% Similarity=0.234 Sum_probs=70.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------------------cc--c-------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------------------EV--E------- 143 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------------------~~--~------- 143 (540)
||+|||||+||+++|..|++.|++|+|+|+.+.....|..+.... .. .
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 799999999999999999999999999999654210111110000 00 0
Q ss_pred -cCC-----C--CCC-CCChHHHHHHHHHHHHH-hC-CEEEEe-eEEEEEeeCCcEEEEE-C-----CeEEEecEEEEcc
Q 009224 144 -NFP-----G--FPD-GITGPDLMDRMRRQAER-WG-AELHQE-DVEFIDVKSNPFTVKS-G-----ERKVKCHSIVFAT 205 (540)
Q Consensus 144 -~~~-----~--~~~-~~~~~~~~~~~~~~~~~-~~-v~~~~~-~v~~i~~~~~~~~v~~-~-----~~~~~~d~lviAt 205 (540)
..+ + ++. .+...++.+.+.+.+.+ .| ..++.+ +|+++..+++.+.+.. + ..++++|.||-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence 000 0 000 12344555556555544 46 457766 8888877666544332 1 2479999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|...
T Consensus 162 G~~S 165 (413)
T PRK07538 162 GIHS 165 (413)
T ss_pred CCCH
Confidence 9754
No 369
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.40 E-value=3.2e-06 Score=85.63 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
+||+|||||.+|+++|++|+++|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999998653
No 370
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.40 E-value=1.1e-06 Score=87.85 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=37.2
Q ss_pred CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
..++....+|+|++|.+.+. .....|..+|..|+.++.+.+.++..
T Consensus 323 ~~l~~k~~~~l~~AGqi~g~--~Gy~ea~a~G~~Ag~n~~~~~~g~~~ 368 (436)
T PRK05335 323 PTLQLKKRPNLFFAGQITGV--EGYVESAASGLLAGINAARLALGKEP 368 (436)
T ss_pred hhccccCCCCEEeeeeecCc--hHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34423367999999999985 34569999999999999999988765
No 371
>PLN02815 L-aspartate oxidase
Probab=98.39 E-value=1.9e-05 Score=84.29 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=40.3
Q ss_pred HHhcCCCeEEEeCceEEEEeeCCCC---ceeeEEEEEccCCceEEEEccEEEEecc
Q 009224 284 RVFNNPNITVHFNTETVDVVSNTKG---QMSGILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 284 ~~l~~~gv~~~~~~~v~~i~~~~~g---~~~~v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
...+..||+++.++.++++..++++ ++.++...+..++....+.++.||+|||
T Consensus 164 ~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 164 AVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred HHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 3334458999999999998765433 3788887665566667789999999999
No 372
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.39 E-value=1.6e-06 Score=89.61 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
...+-+.+.+...+.|++++.++|+.+..+.++. .|.. ++.++++|.+|=|||....
T Consensus 153 R~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4567778888888999999999998888776654 3443 6788999999999997543
No 373
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.39 E-value=3.9e-06 Score=87.21 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++...+.+.+ +.+++++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~---l----l--------~~-----~d~~~~~~l~~~~-~~gI~i~ 227 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK---L----L--------RH-----LDEDISDRFTEIA-KKKWDIR 227 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc---c----c--------cc-----cCHHHHHHHHHHH-hcCCEEE
Confidence 47899999999999999999999999999996543 1 1 01 1234455555433 4689998
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++.+++.+.+.. ++..+.+|.|++|+|.+|+...
T Consensus 228 ~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 228 LGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred eCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 87 8888887666665554 4568999999999999987643
No 374
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.39 E-value=5.1e-06 Score=85.44 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=33.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHc-CC-ceEEEcCCCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARA-NL-KPVVFEGYQA 128 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~-g~-~v~lie~~~~ 128 (540)
....+||+|||||..|+++|++|+++ |. +|+|+|+...
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 34568999999999999999999995 85 9999999653
No 375
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.39 E-value=6.2e-06 Score=86.18 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=48.5
Q ss_pred hcCCCeEEEeCceEEEEeeCCC--CceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 286 FNNPNITVHFNTETVDVVSNTK--GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~--g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
++..++++++++.|.+|..+++ ++++++.+.+..++...++.++.+|+|.|..-+..++
T Consensus 224 ~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 224 APSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred ccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 3466799999999999987754 4789998888766778889999999999987776654
No 376
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.38 E-value=1.4e-06 Score=78.61 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=64.9
Q ss_pred CCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C-HH---H-HHHc---------------
Q 009224 453 PRL-ICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D-PE---I-AEAA--------------- 503 (540)
Q Consensus 453 ~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~-~~---~-~~~~--------------- 503 (540)
+++ +++.+|++||++|+...|.++++.+++.+ ++.++.|+++. + .+ . .+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 554 45666999999999999999999999974 58888887641 1 11 1 1121
Q ss_pred ---------------------CCCcccE----EEEEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 ---------------------GIMGTPC----VQFFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ---------------------~i~~~Pt----~~~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+ +++-++|+++.++.|..+.+++.+.|++.|
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 2346784 444489999999999999888888888764
No 377
>PTZ00058 glutathione reductase; Provisional
Probab=98.38 E-value=4.1e-06 Score=88.52 Aligned_cols=99 Identities=13% Similarity=0.227 Sum_probs=76.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~-------il--------~~-----~d~~i~~~l~~~L~~~GV~i~ 296 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR-------LL--------RK-----FDETIINELENDMKKNNINII 296 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc-------cc--------cc-----CCHHHHHHHHHHHHHCCCEEE
Confidence 57899999999999999999999999999996543 11 01 124667778888999999999
Q ss_pred Ee-eEEEEEeeCC-cEEEEE--CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSN-PFTVKS--GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~-~~~v~~--~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..++.+++ .+.+.. ++..+.+|.|++|+|..|+..
T Consensus 297 ~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 297 THANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred eCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 88 6788876543 344432 345799999999999888754
No 378
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.38 E-value=2.2e-06 Score=82.89 Aligned_cols=116 Identities=24% Similarity=0.377 Sum_probs=72.3
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHc------CCceEEEcCCCCCCCCcceeeccCcc------ccCCCC---------
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARA------NLKPVVFEGYQAGGVPGGQLMTTTEV------ENFPGF--------- 148 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~------g~~v~lie~~~~~~~~gg~~~~~~~~------~~~~~~--------- 148 (540)
.....+||+|||||||||+||.+|.+. .++|+++||... +||+....+-. .-+|.+
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~---~GghtlSGaviep~aldEL~P~wke~~apl~t 148 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE---VGGHTLSGAVIEPGALDELLPDWKEDGAPLNT 148 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc---cCCceecceeeccchhhhhCcchhhcCCcccc
Confidence 344568999999999999999999875 578999999877 55544322111 011111
Q ss_pred ------------------CC----------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC--cEEEEE------
Q 009224 149 ------------------PD----------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN--PFTVKS------ 191 (540)
Q Consensus 149 ------------------~~----------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~--~~~v~~------ 191 (540)
|. -..-..+..++-+..+++|++++.+ .+..+-.+++ ..-+.+
T Consensus 149 ~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 149 PVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc
Confidence 00 0122567888889999999999887 2222222111 111111
Q ss_pred ----------CCeEEEecEEEEccCCC
Q 009224 192 ----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 192 ----------~~~~~~~d~lviAtG~~ 208 (540)
.+-.++++.-|+|-|++
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CCCCccccccccceecceeEEEecccc
Confidence 23467788888888876
No 379
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.38 E-value=1.6e-06 Score=90.45 Aligned_cols=40 Identities=38% Similarity=0.613 Sum_probs=36.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+|+|||||++||+||+.|.++|++|+|+|+.+. +||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~---~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV---LGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC---CCCCcce
Confidence 589999999999999999999999999999888 8887653
No 380
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.37 E-value=4.9e-06 Score=87.48 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=76.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+|+++... . +. ...++.+.+.+.+++.|++++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~GV~i~ 240 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP--------L--------RG-----FDRQCSEKVVEYMKEQGTLFL 240 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc--------c--------cc-----CCHHHHHHHHHHHHHcCCEEE
Confidence 36899999999999999999999999999985211 0 01 124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ .+..+...++.+.+.. +++.+.+|.|++|+|..|+...
T Consensus 241 ~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 241 EGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred cCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 88 6666765544455543 5667899999999999987653
No 381
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.37 E-value=3.2e-06 Score=68.96 Aligned_cols=93 Identities=19% Similarity=0.355 Sum_probs=59.6
Q ss_pred HHHHHHHHH---hCCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-------HHHH--H
Q 009224 442 QYALRKLYH---ESPRLICVLYTS-------PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-------EIAE--A 502 (540)
Q Consensus 442 ~~~~~~~~~---~~~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~--~ 502 (540)
-++|.+.+. +.+++++++|++ +|||.|....|.+++.....+++..|+.+.+..-+ ..-. +
T Consensus 5 y~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 5 YDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcce
Confidence 345555553 456889999984 59999999999999988887778889988884322 2222 4
Q ss_pred cCCCcccEEEEEeCCeEEEEeeCC--CCHHHHHHHHH
Q 009224 503 AGIMGTPCVQFFKNKEMIRTVPGV--KMKKEYREFIE 537 (540)
Q Consensus 503 ~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~i~ 537 (540)
++++++||++-+..++ ++.+. ...+.+..|++
T Consensus 85 ~~l~~IPTLi~~~~~~---rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 85 LKLKGIPTLIRWETGE---RLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp C---SSSEEEECTSS----EEEHHHHH-HHHHHHHHH
T ss_pred eeeeecceEEEECCCC---ccchhhhccHHHHHHHhc
Confidence 9999999999997773 34433 34455555554
No 382
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.37 E-value=4.4e-06 Score=91.20 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECC-eEEEecEEEEccCCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~~~ 209 (540)
..+...+.+.+.+ |++++.+ +|+.+...++.|.|.+++ ..+.+|.||+|+|...
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 3445555555566 7888876 788888878888887644 4568999999999753
No 383
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.36 E-value=5e-06 Score=86.95 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=75.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
..+++|||||+.|+.+|..|++.|.+|+|+++. . +. +. ...++.+.+.+.+++.|++++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-------~l--------~~-----~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-------LL--------RG-----FDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-------cc--------cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999999999999852 1 11 11 125677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..+...++.+.+.. ++ .++.+|.|++|+|..|+..
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 88 5667765555544432 22 4799999999999988764
No 384
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.36 E-value=4.5e-06 Score=88.71 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
.+||+|||||..|+++|+.|+++|++|+|+|+.+.+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 589999999999999999999999999999996543
No 385
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.34 E-value=6.6e-06 Score=88.73 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=42.1
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|+|.+|...++|++||+||+|+|++.. -.....++..|+.|+.+++.++..
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~ 449 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRG 449 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999887679999999999997631 245677888999999999988754
No 386
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.34 E-value=3.3e-06 Score=85.19 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=36.2
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
...+|+|.+|-..+. ..-.+|.+||-.|+.|+++.+.++..
T Consensus 327 k~~~~lf~AGQi~G~--~GY~Eaaa~Gl~agina~~~~~~~~~ 367 (433)
T TIGR00137 327 KDRQTLFFAGQLTGV--EGYVASTAGGWLAGINAARLALGEPL 367 (433)
T ss_pred CCCCCEEECcccccc--hHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 457999999999986 57789999999999999999998764
No 387
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.33 E-value=2.8e-05 Score=83.34 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=39.2
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
+|+++.++.+.++..+++|++.++...+..++....+.++.||+|||-
T Consensus 151 ~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred CcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 488999999888887666889999887755566667889999999995
No 388
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.32 E-value=4.3e-06 Score=92.51 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=76.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+|+|+.+. +.. . .........+.+.+++.|+++
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~-------ll~-----------~-~ld~~~~~~l~~~l~~~GV~v 199 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG-------LMA-----------K-QLDQTAGRLLQRELEQKGLTF 199 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc-------hhh-----------h-hcCHHHHHHHHHHHHHcCCEE
Confidence 347899999999999999999999999999996432 110 0 112455667788889999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.+..++....+.. ++..+.+|.||+|+|.+|+..
T Consensus 200 ~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 200 LLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 998 5777765444333333 677899999999999988654
No 389
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.32 E-value=2.7e-06 Score=84.73 Aligned_cols=96 Identities=28% Similarity=0.449 Sum_probs=74.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-------------CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-------------LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR 160 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-------------~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (540)
..+++|||||+.|++.|.+|+.+- .+|+|+|+.+. +. |.+ ++++.++
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~-------IL--------p~~-----~~~l~~~ 214 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR-------IL--------PMF-----PPKLSKY 214 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch-------hc--------cCC-----CHHHHHH
Confidence 357999999999999999997641 38999997554 21 222 3578889
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
..+.+++.||+++++ .|+.+++ +.+++..+++.+.++.+|-|+|.++..
T Consensus 215 a~~~L~~~GV~v~l~~~Vt~v~~--~~v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 215 AERALEKLGVEVLLGTPVTEVTP--DGVTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred HHHHHHHCCCEEEcCCceEEECC--CcEEEccCCeeEecCEEEEcCCCcCCh
Confidence 999999999999998 7887774 456665333369999999999987654
No 390
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.31 E-value=3.5e-06 Score=80.73 Aligned_cols=104 Identities=14% Similarity=0.275 Sum_probs=83.6
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
...-+++++|||||..||..+.-..++|.+||++|-.+. .++.+ ..++....++.+.+.|
T Consensus 207 L~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~---i~~~m-----------------D~Eisk~~qr~L~kQg 266 (506)
T KOG1335|consen 207 LKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ---IGGVM-----------------DGEISKAFQRVLQKQG 266 (506)
T ss_pred hhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh---hcccc-----------------CHHHHHHHHHHHHhcC
Confidence 344568999999999999999999999999999996554 33332 2478888899999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE------CCeEEEecEEEEccCCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS------GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~------~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.|.++ +|..++..++ .+.++. ...++++|.+++++|.+|..-+
T Consensus 267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 267 IKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred ceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccC
Confidence 999998 8888888777 555543 2357899999999999987654
No 391
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.31 E-value=5.8e-06 Score=86.44 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=76.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. + ....++.+.+.+.+++. +++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~l------------~-----~~d~~~~~~~~~~l~~~-I~i 226 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR---IL------------P-----LEDPEVSKQAQKILSKE-FKI 226 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC---cC------------c-----chhHHHHHHHHHHHhhc-cEE
Confidence 357999999999999999999999999999997543 11 0 12346777788888888 999
Q ss_pred EEe-eEEEEEeeCC-cEEEEE---CCeEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSN-PFTVKS---GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~-~~~v~~---~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..++..++ .+.+.. ++..+.+|.|++|+|..|+...
T Consensus 227 ~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 227 KLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 887 7888876544 444421 3357999999999999987653
No 392
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.31 E-value=1.9e-05 Score=64.88 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCeEEEEEECC----CChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC--HHHHHHcCCCcccEEEEE--
Q 009224 443 YALRKLYHESPRLICVLYTSP----TCGPCRTLKPILGKVIDEFDENVHFVEIDIEED--PEIAEAAGIMGTPCVQFF-- 514 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~-- 514 (540)
.+..+..++..|.++|++|++ ||..|+.... =+++.+-.+.++.++..|++.. .+++..+++.++|++.++
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEe
Confidence 344566788899999999999 7777754410 0334444445688888898754 478999999999998888
Q ss_pred eCC--eEEEEeeCCCCHHHHHHHHHhh
Q 009224 515 KNK--EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 515 ~~g--~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++ +++.++.|..+.+++.+.|+..
T Consensus 86 ~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 86 KDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred cCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 233 5678999999999999988764
No 393
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.30 E-value=8.4e-06 Score=84.82 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHH----hC--CEEEEe-eEEEEEee-CCcEEEEECCeEEEecEEEEccCCC
Q 009224 153 TGPDLMDRMRRQAER----WG--AELHQE-DVEFIDVK-SNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~----~~--v~~~~~-~v~~i~~~-~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
.+..+...+.+.+++ .| ++++.+ +|++++.. ++.+.|.++...+.+|+||+|+|.+
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGY 272 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChh
Confidence 344566667777777 67 677776 89999877 5567787766689999999999975
No 394
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.28 E-value=2.1e-07 Score=82.86 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=74.7
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
-.++.|+++|||.|+...|.++.++.--.+ .+++.+||+..|+-+.-+|-++..||++=.++| +..+|.|.++..+++
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG-eFrrysgaRdk~dfi 119 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG-EFRRYSGARDKNDFI 119 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc-ccccccCcccchhHH
Confidence 367889999999999999999998775544 689999999999999999999999999999999 678999999999999
Q ss_pred HHHHh
Q 009224 534 EFIEA 538 (540)
Q Consensus 534 ~~i~~ 538 (540)
.|++.
T Consensus 120 sf~~~ 124 (248)
T KOG0913|consen 120 SFEEH 124 (248)
T ss_pred HHHHh
Confidence 99863
No 395
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.28 E-value=3.6e-06 Score=72.43 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=57.8
Q ss_pred ecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHHHHHc--------CCC
Q 009224 438 KHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEIAEAA--------GIM 506 (540)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~ 506 (540)
|....++-.+...+.+|++++.++.+||..|+.|.... .++++.++.++.-+++|.++.|++...| +..
T Consensus 22 W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 22 WQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSG 101 (163)
T ss_dssp -B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS--
T ss_pred cccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCC
Confidence 44444444666788899999999999999999998643 5567777666778899999999998877 778
Q ss_pred cccEEEEE-eCCeEEEE
Q 009224 507 GTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 507 ~~Pt~~~~-~~g~~~~~ 522 (540)
++|+.+|+ .+|+.+.-
T Consensus 102 GwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 102 GWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp -SSEEEEE-TTS-EEEE
T ss_pred CCCceEEECCCCCeeee
Confidence 99977777 88888764
No 396
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.27 E-value=6.6e-06 Score=91.17 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=76.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+|+|..+. +.. .....+....+.+.+++.|++++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~-------ll~------------~~ld~~~~~~l~~~L~~~GV~v~ 205 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM-------LMA------------EQLDQMGGEQLRRKIESMGVRVH 205 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc-------chh------------hhcCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999996432 110 01234566778888999999999
Q ss_pred Ee-eEEEEEeeC--CcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKS--NPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~--~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..+..++ ....+.. ++..+.+|.||+|+|.+|+..
T Consensus 206 ~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~ 248 (847)
T PRK14989 206 TSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDK 248 (847)
T ss_pred cCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCch
Confidence 98 677776543 2223332 677899999999999998753
No 397
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.26 E-value=7.6e-06 Score=77.64 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----------------------------------------c-
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----------------------------------------S- 278 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----------------------------------------~- 278 (540)
.-.|+|||+|+.|+-+|..|++.|.+|.++++...+.. .
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 34699999999999999999999999999999764310 0
Q ss_pred ---HHHHHHHhcCCCeEEEeCceEEEEeeCCCC-ceeeEEEEEcc---C---CceEEEEccEEEEecccccC-ccccccc
Q 009224 279 ---RAMQDRVFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKVD---T---GEESVLEAKGLFYGIGHSPN-SQLLQGQ 347 (540)
Q Consensus 279 ---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~~---~---g~~~~i~~D~vi~a~G~~p~-~~~~~~~ 347 (540)
..+.. ...+.|++++.++.+.++..++++ ++.++.+.... . .+..++.++.||.|+|.... ..++...
T Consensus 101 el~~~L~~-~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLAS-KALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHH-HHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 11111 234678999999999998775543 57777763210 1 13467999999999996543 3333211
Q ss_pred --eeccC-----CCCEEeC-------CCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHH
Q 009224 348 --VELDS-----SGYVIVE-------EGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYL 402 (540)
Q Consensus 348 --~~~~~-----~g~i~vd-------~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l 402 (540)
+.... ....+.+ +++ ..-+||+|++|=+++ +.++.+..+ ..+|+.||..|.+.|
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t-~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENT-REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhcc-CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 11110 0011111 122 335799999998765 224555555 458999999998766
No 398
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.25 E-value=1.1e-05 Score=80.03 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=52.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCC-CCCCChHHHHHHHHHHHHHhCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-PDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.+..||+|||+|.+||.||+.|.+.|++|+|+|..++ .||+.........+... ..++.+ ..+.+..+.+++|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r---~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR---VGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC---cCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCC
Confidence 4568999999999999999999999999999999888 78876654321111111 011222 34556677777777
Q ss_pred EE
Q 009224 171 EL 172 (540)
Q Consensus 171 ~~ 172 (540)
..
T Consensus 80 ~~ 81 (450)
T COG1231 80 PL 81 (450)
T ss_pred CC
Confidence 53
No 399
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.25 E-value=1.6e-05 Score=82.04 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE-EEEECCeEEEecEEEEccCCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF-TVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lviAtG~~~ 209 (540)
..+...+.+.+++.|++++.+ +|+.++.+++.+ .+.+++.++.+|+||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcch
Confidence 345556666677789999886 888888776654 3555666899999999999753
No 400
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.25 E-value=1.2e-05 Score=71.24 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++||+.| |++|....+.++++++++. ++.++.|..|. ...+++.|++..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4679999999999 9999999999999999984 67788777652 125677888877
Q ss_pred cc---------EEEEE-eCCeEEEEeeCC--C---CHHHHHHHHH
Q 009224 508 TP---------CVQFF-KNKEMIRTVPGV--K---MKKEYREFIE 537 (540)
Q Consensus 508 ~P---------t~~~~-~~g~~~~~~~g~--~---~~~~~~~~i~ 537 (540)
.| +.+++ ++|+++..+.+. . ..+++.++++
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 77 77777 689888877432 2 3455555443
No 401
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.9e-07 Score=79.36 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=77.7
Q ss_pred CcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 440 KGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+.+| +...++..+++||++||..|+++...++.+++.. .++.|++++.++.++++..+.+..+|.++++..|+.
T Consensus 7 ~~~~~f---~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 7 VFQEQF---LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred hhHHHH---HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh
Confidence 345556 4447889999999999999999999999999999 689999999999999999999999999999999999
Q ss_pred EEEeeCCCCHH
Q 009224 520 IRTVPGVKMKK 530 (540)
Q Consensus 520 ~~~~~g~~~~~ 530 (540)
+.++.|.....
T Consensus 83 v~~l~~~~~~~ 93 (227)
T KOG0911|consen 83 VDRLSGADPPF 93 (227)
T ss_pred hhhhhccCcHH
Confidence 99998886654
No 402
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.25 E-value=8.1e-06 Score=63.42 Aligned_cols=75 Identities=20% Similarity=0.502 Sum_probs=56.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcC--CCcccEEEEEeCCeEEEEeeCCCCH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAG--IMGTPCVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~ 529 (540)
.+..|+.+||++|+.+.+.++++..++. ++.+..+|+++++ ++.+..+ +..+|++ |.+|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i--fi~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQI--FVDQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE--EECCEEEc------CH
Confidence 4678999999999999999999998764 6888999998764 4554444 4789995 46886532 33
Q ss_pred HHHHHHHHhh
Q 009224 530 KEYREFIEAN 539 (540)
Q Consensus 530 ~~~~~~i~~~ 539 (540)
++|.++++..
T Consensus 73 ~~~~~~~~~~ 82 (85)
T PRK11200 73 TDFEAYVKEN 82 (85)
T ss_pred HHHHHHHHHh
Confidence 6677777654
No 403
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.24 E-value=1.7e-05 Score=79.83 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEE-CCeE-EEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKS-GERK-VKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~-~~~~-~~~d~lviAtG~~ 208 (540)
..++...+.+.+.+.|++++++ +|+.+...+++ +.+.+ +++. ++++.||.|.|..
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchh
Confidence 4556666777788889999988 99999998884 44444 4434 9999999999975
No 404
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.24 E-value=1.6e-05 Score=81.11 Aligned_cols=37 Identities=41% Similarity=0.524 Sum_probs=33.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
.++||+|||||.+|+++|++|+++|.+|+++|+...+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 4589999999999999999999999999999986643
No 405
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.24 E-value=1.3e-06 Score=90.41 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=42.2
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT 140 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~ 140 (540)
..+.++|+|||||+|||+||++|...|++|+|+|..++ .||+.....
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR---vGGRI~t~~ 58 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR---VGGRIYTFK 58 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC---cCceeEEEe
Confidence 44568999999999999999999999999999999998 999887643
No 406
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.23 E-value=6.3e-06 Score=69.19 Aligned_cols=70 Identities=20% Similarity=0.432 Sum_probs=58.6
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCC--
Q 009224 452 SPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIM-- 506 (540)
Q Consensus 452 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~-- 506 (540)
.++++++.||+. ||+.|+...+.++++.+++.. ++.++.|..+. +.++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999999 999999999999999999874 69999998863 33667788888
Q ss_pred ----cccEEEEE-eCCeEEE
Q 009224 507 ----GTPCVQFF-KNKEMIR 521 (540)
Q Consensus 507 ----~~Pt~~~~-~~g~~~~ 521 (540)
.+|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89988888 6676654
No 407
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.23 E-value=9.9e-06 Score=86.21 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|.+||+||+|++++.. -.....++..|+.|+.+++.++..
T Consensus 348 ~GGi~vd~~~-~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 348 MGGIRINEDC-ETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred cCCEEECCCC-cccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 4779999998 79999999999987531 123457888999999999988754
No 408
>PLN02546 glutathione reductase
Probab=98.23 E-value=1.3e-05 Score=84.80 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=75.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. +. ...++...+.+.+++.|+++
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~-------il--------~~-----~d~~~~~~l~~~L~~~GV~i 310 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK-------VL--------RG-----FDEEVRDFVAEQMSLRGIEF 310 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc-------cc--------cc-----cCHHHHHHHHHHHHHCCcEE
Confidence 357999999999999999999999999999996443 11 01 23466777888899999999
Q ss_pred EEe-eEEEEEee-CCcEEEEECCeEE-EecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVK-SNPFTVKSGERKV-KCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~-~~~~~v~~~~~~~-~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..+... ++.+.+..+...+ .+|.|++|+|..|+..
T Consensus 311 ~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 311 HTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 987 67777653 3334555444444 4899999999988764
No 409
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.23 E-value=3.4e-06 Score=65.36 Aligned_cols=59 Identities=25% Similarity=0.459 Sum_probs=45.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH-----HHHHcCCCcccEEEEEeCCeE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE-----IAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-----~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++.|+++|||+|+.+++.++++. ..+.+.++.+|.+++.+ +.+.+++.++|++ |.+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 46799999999999999999976 33347788888776543 5666799999996 567764
No 410
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.23 E-value=1.1e-05 Score=72.06 Aligned_cols=88 Identities=10% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC----------------------------HHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED----------------------------PEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~----------------------------~~~~~ 501 (540)
.+++++|+|| +.||++|....+.++++++++. .++.++.|..+.. .++++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3578999999 8999999999999999999985 3577777766432 23456
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
+|++. ..|+.+++ ++|+++..+.+. .+.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 67775 56788887 789888887543 3566777777653
No 411
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.21 E-value=1e-05 Score=70.84 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~~ 508 (540)
.+++++++||+. ||+.|....+.++++.+++.+ ++.++.|..+. ..+++++|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 457899999965 788899999999999998853 58888887753 2345667787543
Q ss_pred ------------cEEEEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 509 ------------PCVQFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 509 ------------Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
|+.+++ ++|+++..+.|....+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 666666 79999999998876655555443
No 412
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=3.2e-06 Score=85.07 Aligned_cols=114 Identities=25% Similarity=0.298 Sum_probs=70.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-----------CCC-----------CcceeeccCccccC------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-----------GGV-----------PGGQLMTTTEVENF------ 145 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-----------~~~-----------~gg~~~~~~~~~~~------ 145 (540)
.+||+|||||.||+.||..+++.|+++.|+.-+.. ||. .||.+-...+...+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999875221 111 12222111110000
Q ss_pred ----CC---CCCCCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCC
Q 009224 146 ----PG---FPDGITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 146 ----~~---~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~ 207 (540)
|. .........+...++..++. .++.++.+.|+++..+++. .-|.+ .+..+.++.||++||.
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 00011222334444444443 3788999988888765543 22333 7889999999999996
No 413
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.20 E-value=1.7e-05 Score=85.40 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
..+||+|||||..|+++|+.|+++|++|+|||+.+.+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a 106 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFS 106 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccC
Confidence 4589999999999999999999999999999997544
No 414
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.20 E-value=1.3e-05 Score=86.02 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH-HHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA-ERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 172 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+ ++.|+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~-------ll--------~~-----~d~eis~~l~~~ll~~~GV~I 371 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ-------LL--------PL-----LDADVAKYFERVFLKSKPVRV 371 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc-------cc--------cc-----CCHHHHHHHHHHHhhcCCcEE
Confidence 46899999999999999999999999999997543 11 11 1245566666654 5789999
Q ss_pred EEe-eEEEEEeeCCc--EEEEEC--------C--------eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVKSG--------E--------RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~~~--------~--------~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ .|..++..++. +.+... + ..+.+|.|++|+|.+|+...
T Consensus 372 ~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 372 HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 988 78888765432 444321 1 36999999999999987654
No 415
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.20 E-value=2e-05 Score=73.70 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=68.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----------HHHHHHcCCCcccEEEEE-eC-CeE
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----------PEIAEAAGIMGTPCVQFF-KN-KEM 519 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~i~~~Pt~~~~-~~-g~~ 519 (540)
++--+++||.+.|++|+++.|.++.++++|+ +.++-|++|.. ..+++++++..+|+++++ ++ ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4577899999999999999999999999996 55555555533 458999999999999988 44 455
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
...-.|..+.++|.+-|..+
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNV 247 (256)
T ss_pred EEEeeccCCHHHHHHHHHHH
Confidence 55667999999998877543
No 416
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.19 E-value=3.3e-05 Score=83.39 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~ 128 (540)
..+||+||||||+||++|..|++. |++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 468999999999999999999995 999999998653
No 417
>PTZ00367 squalene epoxidase; Provisional
Probab=98.18 E-value=1.8e-05 Score=83.71 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999865
No 418
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.17 E-value=1e-05 Score=70.41 Aligned_cols=43 Identities=28% Similarity=0.484 Sum_probs=34.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE 495 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~ 495 (540)
+..+++.|++.||++|+...+.++++.+++. .++.++.|+.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 4445555569999999999999999999985 368888888753
No 419
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.17 E-value=1.3e-05 Score=85.16 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||+|.||++||..++ .|.+|+|+||...
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 3579999999999999999996 4999999999765
No 420
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.17 E-value=3.2e-05 Score=68.88 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=105.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------ 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------ 277 (540)
.-.|+|||+|++|+-+|.+|++.|.+|.+++|+-.+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 45799999999999999999999999999999865432
Q ss_pred --cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC------CceEEEEccEEEEecccccCc-ccccc--
Q 009224 278 --SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT------GEESVLEAKGLFYGIGHSPNS-QLLQG-- 346 (540)
Q Consensus 278 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~-~~~~~-- 346 (540)
...+..+. -+.|.++..+..+.++.-.++.++.++.+.=..- =+..+++++.||-+||..... .++..
T Consensus 110 e~~skl~~~a-~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 110 EFASKLAARA-LDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHH-HhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 01122222 2467889999999887766544688876632110 124568899999999976542 22211
Q ss_pred ---ceeccCCCCEE-------eCCCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHHhc
Q 009224 347 ---QVELDSSGYVI-------VEEGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYLVN 404 (540)
Q Consensus 347 ---~~~~~~~g~i~-------vd~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l~~ 404 (540)
+.++-.....+ +-+++ +.-.||+|++|=+++ +.++.+..+ ..+|+.||..+...|+.
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T-~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENT-GEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhcc-ccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 11111001111 11222 346799999998765 224455555 45899999998877653
No 421
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.15 E-value=1.7e-05 Score=81.89 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHHH--------------cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAAR--------------ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR 160 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~--------------~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (540)
.+|+|||||+.|+..|..|+. .+.+|+|+++.+. +. +. .+.++.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~-------ll--------~~-----~~~~~~~~ 233 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE-------VL--------GS-----FDQALRKY 233 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc-------cc--------cc-----CCHHHHHH
Confidence 489999999999999999875 3688999996443 21 11 12467788
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
+.+.+++.||+++.+ ++..++. +.+.+. +++++.+|.+|+++|..|.
T Consensus 234 ~~~~L~~~gV~v~~~~~v~~v~~--~~v~~~-~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 234 GQRRLRRLGVDIRTKTAVKEVLD--KEVVLK-DGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred HHHHHHHCCCEEEeCCeEEEEeC--CEEEEC-CCCEEEccEEEEccCCCCc
Confidence 889999999999987 7777764 344444 6778999999999998775
No 422
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.15 E-value=1.8e-05 Score=81.23 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=44.2
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
..+.|-++...++|+.+..+++ +.+|.+.+..+|+..++.++.||-|+|-
T Consensus 174 A~~~Ga~il~~~~v~~~~re~~--v~gV~~~D~~tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 174 AAEHGAEILTYTRVESLRREGG--VWGVEVEDRETGETYEIRARAVVNAAGP 223 (532)
T ss_pred HHhcccchhhcceeeeeeecCC--EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence 3577999999999999988764 8899999988899999999999999994
No 423
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.14 E-value=2.1e-05 Score=71.14 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=64.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||+.|....+.|+++.+++. .++.++.|..+. +..+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3678999999 9999999999999999999885 356666666542 235667788
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
+. ..|+.+++ ++|+++...... ...+++.+.|++
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 85 46877777 789888765432 356667666653
No 424
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.14 E-value=3.4e-05 Score=82.46 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|++||+||+|+|++.. -.....++..|+.|+.+++.+...
T Consensus 357 ~GGi~~d~~~-~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 357 MGGIETDINC-ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred CCCeeECcCc-ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 5779999988 89999999999997421 145677888999999999987654
No 425
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.12 E-value=1.6e-05 Score=77.98 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=69.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc---c---------cc---------cHHHHHHHhcCCCeEEEeCceEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ---L---------RA---------SRAMQDRVFNNPNITVHFNTETV 300 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~---~---------~~---------~~~~~~~~l~~~gv~~~~~~~v~ 300 (540)
+|+|||+|+.|+++|..|++.|.+|+++++.+. + +. ......+.+++.|+++++ ..+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997541 0 10 123344456677999998 7888
Q ss_pred EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 301 ~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
++...++ ...+.. .++.++.+|.+|+|+|..|+...+
T Consensus 81 ~v~~~~~----~~~v~~---~~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 81 KVDLSDR----PFKVKT---GDGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEecCC----eeEEEe---CCCCEEEeCEEEECCCCCcccCCC
Confidence 8887643 123322 223568999999999998875443
No 426
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.12 E-value=6.3e-06 Score=91.07 Aligned_cols=102 Identities=21% Similarity=0.266 Sum_probs=67.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCc-c------------------cc----------
Q 009224 96 NVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTE-V------------------EN---------- 144 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~-~------------------~~---------- 144 (540)
+|+|||||+|||++|..|++. |++|+|+|+.......|.-+..... . ..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 8999999997753211211110000 0 00
Q ss_pred ----CCCCC-CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 145 ----FPGFP-DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 145 ----~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+.+ ......++.+.+.+.+.+.|++++.+ +++.++. ...++|.||.|+|..
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-----------~~~~~D~VVgADG~~ 140 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-----------LAADADLVIASDGLN 140 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-----------hhcCCCEEEEcCCCC
Confidence 00000 12445778888888888889998887 4444321 124789999999964
No 427
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.10 E-value=3.1e-06 Score=88.63 Aligned_cols=43 Identities=42% Similarity=0.557 Sum_probs=39.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
..+||||||||++||+||..|+++|++|+|+||+.. +||....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~---~GG~a~t 44 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR---VGGRART 44 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC---CCcceEE
Confidence 358999999999999999999999999999999988 8886654
No 428
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.10 E-value=2.3e-05 Score=67.69 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----------------------HHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----------------------PEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~i~~ 507 (540)
.+++++++||+.| |++|+...+.++++.+++. ++.|+.|+.+.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4678999999988 6999999999999999985 688888887521 24556677743
Q ss_pred ------ccEEEEE-eCCeEEEEeeCC--CCHHHHHHHH
Q 009224 508 ------TPCVQFF-KNKEMIRTVPGV--KMKKEYREFI 536 (540)
Q Consensus 508 ------~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~i 536 (540)
.|+.+++ ++|+++....|. ....++++.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6877777 689999888765 3334455544
No 429
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.10 E-value=4.4e-05 Score=79.22 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCceEEEcC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEG 125 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~ 125 (540)
+..+||+|||||.+|+++|..|++. +.+|+|+||
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 3457999999999999999999999 899999999
No 430
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.10 E-value=6.3e-05 Score=80.60 Aligned_cols=35 Identities=40% Similarity=0.592 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||+|.+|++||..+++.|++|+|+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~ 50 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY 50 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 57999999999999999999999999999998654
No 431
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.09 E-value=5.3e-05 Score=80.92 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
.+..+|+|||||++||++|..|++.|++|+|||+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999964
No 432
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.08 E-value=1.5e-05 Score=71.19 Aligned_cols=42 Identities=7% Similarity=0.234 Sum_probs=36.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~ 494 (540)
.+++++|.||++||++|++ .+.++++.++|.+ ++.++-+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4689999999999999975 8899999999964 6889998885
No 433
>PRK12839 hypothetical protein; Provisional
Probab=98.08 E-value=7.9e-05 Score=79.51 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=34.3
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
....+||+|||+|.+|++||..|++.|.+|+|+||...
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 34568999999999999999999999999999999754
No 434
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.07 E-value=2.4e-05 Score=72.99 Aligned_cols=80 Identities=21% Similarity=0.458 Sum_probs=60.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI--------------------------------------- 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~--------------------------------------- 493 (540)
.+..++.|..+.||+|+++.+.+.++.+. ++.++.+..
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 46789999999999999999998887542 233332211
Q ss_pred -----cCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 494 -----EEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 494 -----~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.+++++++|+++|+++ +.||+. ..|+.+.++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1234678889999999988 688975 48999999999999864
No 435
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.06 E-value=3.3e-05 Score=67.15 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------C--HHHHHHcCCCc
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------D--PEIAEAAGIMG 507 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~--~~~~~~~~i~~ 507 (540)
++++++.|| +.||+.|....|.++++.+++.+ ++.++.|+.+. + .++++.|++..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 377788787 99999999999999999999863 68888876642 2 35667778763
Q ss_pred ----c--cEEEEE-eCCeEEEEeeCCC----CHHHHHHHHH
Q 009224 508 ----T--PCVQFF-KNKEMIRTVPGVK----MKKEYREFIE 537 (540)
Q Consensus 508 ----~--Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~ 537 (540)
+ |+.+++ ++|+++....|.. +..++.+.|+
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 3 366666 7899988887754 3455555544
No 436
>PRK10262 thioredoxin reductase; Provisional
Probab=98.06 E-value=3.2e-05 Score=76.73 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=73.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|..|+.+|..|++.+.+|+++++.+. + + ....+.+.+.+.+++.++++
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-------~------------~---~~~~~~~~~~~~l~~~gV~i 202 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-------F------------R---AEKILIKRLMDKVENGNIIL 202 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-------c------------C---CCHHHHHHHHhhccCCCeEE
Confidence 457999999999999999999999999999996432 0 0 01234566777788889999
Q ss_pred EEe-eEEEEEeeCC---cEEEEEC-----CeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSN---PFTVKSG-----ERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~---~~~v~~~-----~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.+..++. .+.+... ...+.+|.||+++|..|+..
T Consensus 203 ~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 203 HTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 986 7888876543 2334321 24699999999999988654
No 437
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.06 E-value=3.8e-05 Score=71.38 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=66.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC---------CHHHHHHcCCCcccEEEEE-eC-CeEEE
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE---------DPEIAEAAGIMGTPCVQFF-KN-KEMIR 521 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---------~~~~~~~~~i~~~Pt~~~~-~~-g~~~~ 521 (540)
++--+++||.+.|++|+++.|.++.++++|+=.+..+.+|.-- +...+++++|..+|+++++ ++ ++...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 4467899999999999999999999999996334444554422 2346789999999999998 33 45556
Q ss_pred EeeCCCCHHHHHHHHHh
Q 009224 522 TVPGVKMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~ 538 (540)
.-.|..+.++|.+-|..
T Consensus 223 v~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 223 LSYGFITQDDLAKRFLN 239 (248)
T ss_pred EeeccCCHHHHHHHHHH
Confidence 67899999999887764
No 438
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.04 E-value=0.00014 Score=77.39 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=33.3
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
....+||||||+| +|++||..+++.|.+|+|+||.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 3456899999999 899999999999999999999754
No 439
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=8.3e-06 Score=82.36 Aligned_cols=42 Identities=31% Similarity=0.409 Sum_probs=38.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
++|+|+|||.|||+||..|+++|++|||+|+.++ +||.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~---~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDR---LGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCc---cCceeeee
Confidence 4799999999999999999999999999999988 88876543
No 440
>PLN02661 Putative thiazole synthesis
Probab=98.02 E-value=0.0001 Score=72.17 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=104.9
Q ss_pred CCEEEEEeCCccHHHHHHHHHhc-CCeEEEEEecccccc-----------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLRA----------------------------------------- 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~-g~~v~li~~~~~~~~----------------------------------------- 277 (540)
.-.|+|||+|..|+-+|..|++. |.+|+++++...+..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 45799999999999999999975 889999998654211
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc------cCC---ceEEEEccEEEEecccccCcccc-
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV------DTG---EESVLEAKGLFYGIGHSPNSQLL- 344 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~------~~g---~~~~i~~D~vi~a~G~~p~~~~~- 344 (540)
...+.++.+++.||+++.++.+.++..++ +++.++.+... ..+ +...+.++.||+|||..+...-.
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence 01133344456789999999999987753 67778775211 111 23478999999999965431110
Q ss_pred -cc--ceeccC--C--CCEEeC-------CCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHHhc
Q 009224 345 -QG--QVELDS--S--GYVIVE-------EGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYLVN 404 (540)
Q Consensus 345 -~~--~~~~~~--~--g~i~vd-------~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l~~ 404 (540)
.. .+.+.. . ....++ +++ ..-+||+|++|=.++ +.++.+..+ ..+|+.||..|.+.|..
T Consensus 251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t-~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLT-REVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred hhcccccCCccCCCCccccchhhHHHHHHhcc-CcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 00 000000 0 011111 122 335899999997764 224555555 55899999999999974
No 441
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.01 E-value=5.8e-05 Score=69.08 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCeEE-EEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHc
Q 009224 453 PRLIC-VLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 453 ~~~~~-v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
++.++ ..||++||+.|....+.|.++.+++.+ ++.++.+.++. +.++++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 45454 468999999999999999999988863 56677665542 23567778
Q ss_pred CCC------cccEEEEE-eCCeEEEEe----eCCCCHHHHHHHHHhh
Q 009224 504 GIM------GTPCVQFF-KNKEMIRTV----PGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~------~~Pt~~~~-~~g~~~~~~----~g~~~~~~~~~~i~~~ 539 (540)
++. .+|+++++ ++|++.... ...++.+++...|+.+
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 874 58988888 688777655 3446788888877754
No 442
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.00 E-value=2.5e-05 Score=74.24 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=36.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
.+.+|+|||+|.+||+||..|.++ ++|||+|.+.+ .||.-..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~r---lGGha~T 48 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRR---LGGHANT 48 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecccc---ccCccce
Confidence 457999999999999999999876 89999999887 6666543
No 443
>PRK07208 hypothetical protein; Provisional
Probab=97.99 E-value=8.2e-06 Score=85.85 Aligned_cols=43 Identities=40% Similarity=0.492 Sum_probs=39.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+++||+|||||++||+||+.|+++|++|+|+|+.+. +||.+..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~---~GG~~~s 45 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV---VGGISRT 45 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC---CCceeee
Confidence 457999999999999999999999999999999988 8887654
No 444
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.99 E-value=5.3e-05 Score=80.23 Aligned_cols=87 Identities=21% Similarity=0.165 Sum_probs=72.0
Q ss_pred HHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeC
Q 009224 447 KLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 447 ~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 525 (540)
+.+.+- +..-+..|+++.||+|..+...+++++...+ ++.+-.+|..++++++++|++.++|++++ ||+. .+.|
T Consensus 109 ~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g 183 (517)
T PRK15317 109 EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQG 183 (517)
T ss_pred HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE--EEec
Confidence 334443 3445888999999999999999999999876 79999999999999999999999999755 6654 4668
Q ss_pred CCCHHHHHHHHHh
Q 009224 526 VKMKKEYREFIEA 538 (540)
Q Consensus 526 ~~~~~~~~~~i~~ 538 (540)
..+.++|.+.+.+
T Consensus 184 ~~~~~~~~~~~~~ 196 (517)
T PRK15317 184 RMTLEEILAKLDT 196 (517)
T ss_pred CCCHHHHHHHHhc
Confidence 8998888888764
No 445
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.00013 Score=58.38 Aligned_cols=94 Identities=19% Similarity=0.368 Sum_probs=75.1
Q ss_pred HHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE--E
Q 009224 445 LRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI--R 521 (540)
Q Consensus 445 ~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~ 521 (540)
.++.+ ....+.+++-|..+|-|.|.++...+.+.+++...=..+|.+|+++-+++.+-|++...||+++|-+++-+ +
T Consensus 14 VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD 93 (142)
T KOG3414|consen 14 VDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKID 93 (142)
T ss_pred HHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEe
Confidence 34444 44578999999999999999999999999999986678889999999999999999999999888555433 3
Q ss_pred EeeCC--------CCHHHHHHHHHh
Q 009224 522 TVPGV--------KMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~--------~~~~~~~~~i~~ 538 (540)
.-.|. .+++++.+.++.
T Consensus 94 ~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 94 LGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred eCCCCCceEEEEeccHHHHHHHHHH
Confidence 22332 467888887764
No 446
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.98 E-value=7.8e-06 Score=85.35 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=37.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeecc
Q 009224 95 ENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~ 139 (540)
++|+|||||+|||+||+.|++.| ++|+|+|+.+. +||+....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~---~GGr~~t~ 44 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR---LGGKIQTV 44 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC---CcceEEEE
Confidence 36999999999999999999987 89999999988 88887653
No 447
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.97 E-value=3.5e-05 Score=66.39 Aligned_cols=43 Identities=19% Similarity=0.405 Sum_probs=37.7
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFDE----NVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~ 494 (540)
.++++++.||++||++ |....+.++++.+++.+ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5689999999999998 99999999999999864 3888888765
No 448
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.97 E-value=6.1e-05 Score=74.97 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
...|+++|||..|+.+|..|...+++||+|++.+. + ++. .....+.+.+..++++.|++++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~---~---------------~~~-lf~~~i~~~~~~y~e~kgVk~~ 273 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW---L---------------LPR-LFGPSIGQFYEDYYENKGVKFY 273 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCcc---c---------------hhh-hhhHHHHHHHHHHHHhcCeEEE
Confidence 57899999999999999999999999999997654 1 111 3346778888999999999999
Q ss_pred Eee-EEEEEeeC--CcEEEEE-CCeEEEecEEEEccCCCCCCCCCC
Q 009224 174 QED-VEFIDVKS--NPFTVKS-GERKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 174 ~~~-v~~i~~~~--~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ip 215 (540)
.++ +.+++... +...|.. ++..+.+|-||+.+|+.|....+.
T Consensus 274 ~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 274 LGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred EecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 984 45555443 2233333 788999999999999999887665
No 449
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.97 E-value=3.8e-05 Score=55.12 Aligned_cols=55 Identities=31% Similarity=0.627 Sum_probs=43.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH----HcCCCcccEEEEEeCCeE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE----AAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~i~~~Pt~~~~~~g~~ 519 (540)
++.|+.+||++|+.++..|++. ++.|..+|++++++..+ ..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 4679999999999999999553 58899999998864433 349999999665 7764
No 450
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.95 E-value=2e-05 Score=72.27 Aligned_cols=103 Identities=17% Similarity=0.321 Sum_probs=73.1
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------------------cH-----HHHHHHhcCCCeEEEeCc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------SR-----AMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------~~-----~~~~~~l~~~gv~~~~~~ 297 (540)
+|+|||||+.|+.+|..|++.+.+++++.+.+.... .. .+.++ +...+++++.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQ-LKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHH-HHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccc-cccceEEEeecc
Confidence 589999999999999999999999999977553210 00 11222 356789998899
Q ss_pred eEEEEeeCCCCc-eeeEEEEEccCCceEEEEccEEEEecccccCccccc
Q 009224 298 ETVDVVSNTKGQ-MSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ 345 (540)
Q Consensus 298 ~v~~i~~~~~g~-~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~ 345 (540)
++.++....... ...+.+.....+++.++.+|.+|+|+|..|....+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~ 128 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP 128 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence 999997775410 001223233446778899999999999988765443
No 451
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.95 E-value=5.8e-05 Score=58.62 Aligned_cols=74 Identities=22% Similarity=0.478 Sum_probs=53.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcCC--CcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAGI--MGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
++.|..+|||+|.+++..++++..++. .+.+..+|++.+. ++.+..+- .++|++ |.+|+.+ -| .+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i--fi~g~~i---gG---~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQI--FVDEKHV---GG---CT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE--EECCEEe---cC---HH
Confidence 577899999999999999999876654 4778888887543 45566664 789996 4577542 22 35
Q ss_pred HHHHHHHhh
Q 009224 531 EYREFIEAN 539 (540)
Q Consensus 531 ~~~~~i~~~ 539 (540)
+|.+++++.
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 677776653
No 452
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.94 E-value=5.3e-05 Score=56.63 Aligned_cols=67 Identities=31% Similarity=0.625 Sum_probs=48.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc----CCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA----GIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
+..|+.+||++|..+...+++. ++.|..+|++.+++..+++ ++..+|++++ +|+ .+.|. +.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~-~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGF-RPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecC-CHHHH
Confidence 5678999999999998888762 4677888888776655544 6789999865 453 44454 55566
Q ss_pred HHH
Q 009224 533 REF 535 (540)
Q Consensus 533 ~~~ 535 (540)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 654
No 453
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.93 E-value=0.00034 Score=57.04 Aligned_cols=96 Identities=20% Similarity=0.350 Sum_probs=73.1
Q ss_pred HHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCccc-EEEEEeCCeE
Q 009224 442 QYALRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTP-CVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P-t~~~~~~g~~ 519 (540)
....++.+ ...++.+++-|..+|-+.|.++...+.+.+++...-..+|.+|.++-++.-+.|.+. -| |++||-+++.
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 33445555 455789999999999999999999999999999866889999999999999999998 88 6666656654
Q ss_pred EEE--eeCC--------CCHHHHHHHHHh
Q 009224 520 IRT--VPGV--------KMKKEYREFIEA 538 (540)
Q Consensus 520 ~~~--~~g~--------~~~~~~~~~i~~ 538 (540)
+.. -.|. .+++++.+.++.
T Consensus 87 m~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 87 MMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 432 2232 357888888774
No 454
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.93 E-value=7.7e-05 Score=72.90 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=71.2
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------------------------------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------- 277 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------- 277 (540)
..|+|||+|+.|+-+|..+++.|.+|.++++.+.+..
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4699999999999999999999999999998876421
Q ss_pred --------------------------c---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 278 --------------------------S---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 278 --------------------------~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
. -++....+++.||+++++++|.++..++. +..+.. .++.++.|
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~----~f~l~t---~~g~~i~~ 156 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS----GFRLDT---SSGETVKC 156 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc----eEEEEc---CCCCEEEc
Confidence 0 11222336788999999999999998863 244433 23347999
Q ss_pred cEEEEecccccC
Q 009224 329 KGLFYGIGHSPN 340 (540)
Q Consensus 329 D~vi~a~G~~p~ 340 (540)
|.+|+|+|-+..
T Consensus 157 d~lilAtGG~S~ 168 (408)
T COG2081 157 DSLILATGGKSW 168 (408)
T ss_pred cEEEEecCCcCC
Confidence 999999995543
No 455
>PLN02268 probable polyamine oxidase
Probab=97.93 E-value=1.1e-05 Score=83.77 Aligned_cols=76 Identities=26% Similarity=0.337 Sum_probs=51.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCC-CCC-CCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFP-GFP-DGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.+|+|||||.|||+||+.|.+.|++|+|+|+.++ .||+...... ..++ ... ..+.+......+.+.++++|++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r---~GGri~t~~~-~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~ 76 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDR---IGGRVHTDYS-FGFPVDMGASWLHGVCNENPLAPLIGRLGLPL 76 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---CCceeeecCc-CCcccCCCCeeEeccCCCchHHHHHHHhCCce
Confidence 3799999999999999999999999999999998 9998875321 1110 000 01110000123567788888865
Q ss_pred EE
Q 009224 173 HQ 174 (540)
Q Consensus 173 ~~ 174 (540)
..
T Consensus 77 ~~ 78 (435)
T PLN02268 77 YR 78 (435)
T ss_pred Ee
Confidence 43
No 456
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.93 E-value=3e-05 Score=81.48 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=60.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||+|.+|+++|..|+++|++|+++|+.+. +....+...+++.|++++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~---------------------------~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD---------------------------ERHRALAAILEALGATVR 68 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch---------------------------hhhHHHHHHHHHcCCEEE
Confidence 46899999999999999999999999999995331 112334556778899888
Q ss_pred EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 174 QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
.+.... ....+|.||+++|..|..|-+
T Consensus 69 ~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 69 LGPGPT--------------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ECCCcc--------------ccCCCCEEEECCCcCCCCHHH
Confidence 763211 124589999999998877643
No 457
>PLN02576 protoporphyrinogen oxidase
Probab=97.92 E-value=1.3e-05 Score=84.84 Aligned_cols=44 Identities=27% Similarity=0.457 Sum_probs=39.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceeecc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
..+||+|||||++||+||+.|.+. |++|+|+|+.+. .||.+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r---vGGr~~t~ 55 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR---VGGNITSV 55 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC---CCCceeEe
Confidence 346899999999999999999999 999999999988 88887654
No 458
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.92 E-value=0.00022 Score=56.54 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcCCCc-ccEEEE
Q 009224 440 KGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAGIMG-TPCVQF 513 (540)
Q Consensus 440 ~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~-~Pt~~~ 513 (540)
.+.+++.+++..+ .++++++=.+..||-.......|++..+..++.+.+|.+|+-++. +++.+|+|+. -|.+++
T Consensus 5 ~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 5 TTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp -SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred CCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 4567788888664 567777778999999999999999999999877999999998765 5678899975 699999
Q ss_pred EeCCeEEEEee-CCCCHHHH
Q 009224 514 FKNKEMIRTVP-GVKMKKEY 532 (540)
Q Consensus 514 ~~~g~~~~~~~-g~~~~~~~ 532 (540)
++||+.+..-. ..++.+.|
T Consensus 85 i~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EETTEEEEEEEGGG-SHHHH
T ss_pred EECCEEEEECccccCCHHhc
Confidence 99999986543 34555544
No 459
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.91 E-value=0.00014 Score=65.46 Aligned_cols=87 Identities=9% Similarity=0.036 Sum_probs=64.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||+.|....+.|.++.+++.+ ++.++-|..+. +.++++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3568999999 99999999999999999999853 56666666542 346778888
Q ss_pred C----Ccc--cEEEEE-eCCeEEEEeeC----CCCHHHHHHHHHh
Q 009224 505 I----MGT--PCVQFF-KNKEMIRTVPG----VKMKKEYREFIEA 538 (540)
Q Consensus 505 i----~~~--Pt~~~~-~~g~~~~~~~g----~~~~~~~~~~i~~ 538 (540)
+ .++ |+.+++ ++|+++..... .++.+++...|+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 8 355 977777 68988766533 2467777777754
No 460
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=5.6e-05 Score=59.99 Aligned_cols=75 Identities=21% Similarity=0.480 Sum_probs=55.8
Q ss_pred HHHHHHHHHh--CCCeEEEEEEC--------CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-------HHHHHcC
Q 009224 442 QYALRKLYHE--SPRLICVLYTS--------PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-------EIAEAAG 504 (540)
Q Consensus 442 ~~~~~~~~~~--~~~~~~v~f~~--------~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~ 504 (540)
.+.|.+.+.+ +++.++++|++ +|||.|.+..|.+.+..+..+.++.|+.+++-+-+ ..-...+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 3445554422 34448888873 69999999999999999978888999999986533 3334456
Q ss_pred C-CcccEEEEEeC
Q 009224 505 I-MGTPCVQFFKN 516 (540)
Q Consensus 505 i-~~~Pt~~~~~~ 516 (540)
+ +++||++=+++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999998875
No 461
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.91 E-value=8.6e-05 Score=75.13 Aligned_cols=93 Identities=24% Similarity=0.358 Sum_probs=68.5
Q ss_pred cccEEEECCCHHHHHHHHHHHH----cC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR----AN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAER 167 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~----~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (540)
.++|+|||+|++|+.+|..|++ +| .+|+|+.. +. +.. . ...++...+.+.+++
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~-------~l~--------~-----~~~~~~~~~~~~l~~ 203 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-AS-------LLP--------G-----FPAKVRRLVLRLLAR 203 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cc-------ccc--------c-----CCHHHHHHHHHHHHH
Confidence 4689999999999999999975 34 47998842 11 110 1 123566777888999
Q ss_pred hCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 168 WGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 168 ~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
.|++++.+ ++..++. +.+.+. ++..+.+|.||+|+|..|.
T Consensus 204 ~gV~v~~~~~v~~i~~--~~v~~~-~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPD--GALILA-DGRTLPADAILWATGARAP 244 (364)
T ss_pred CCCEEEeCCeeEEEcC--CeEEeC-CCCEEecCEEEEccCCChh
Confidence 99999998 6777753 244443 6678999999999998875
No 462
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.90 E-value=1.4e-05 Score=83.80 Aligned_cols=43 Identities=33% Similarity=0.532 Sum_probs=39.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHc----CCceEEEcCCCCCCCCcceeecc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA----NLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~----g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
++||+|||||++||+||+.|+++ |++|+|+|+.+. +||.....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r---~GG~~~t~ 48 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR---VGGKIQTV 48 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc---CcceEEEE
Confidence 36899999999999999999999 999999999988 88887653
No 463
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.88 E-value=0.00011 Score=63.08 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=59.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------~~~~~~~~~i~~ 507 (540)
.+++++++|| +.||+.|....+.++++.+++. .++.|+.|..+. +..+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5788999999 7899999999999999999984 368888887752 124556677776
Q ss_pred cc---------EEEEE-eCCeEEEEeeCCCC
Q 009224 508 TP---------CVQFF-KNKEMIRTVPGVKM 528 (540)
Q Consensus 508 ~P---------t~~~~-~~g~~~~~~~g~~~ 528 (540)
.| +++++ ++|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 55 66777 67999988887654
No 464
>PRK07233 hypothetical protein; Provisional
Probab=97.88 E-value=1.4e-05 Score=82.90 Aligned_cols=40 Identities=33% Similarity=0.472 Sum_probs=37.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+|+|||||++||+||..|++.|++|+|+|+.+. +||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~---~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ---LGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC---CCCceee
Confidence 599999999999999999999999999999998 8887644
No 465
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.88 E-value=0.00012 Score=84.54 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=33.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
....||||||+|.||++||..+++.|.+|+|+||...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 3458999999999999999999999999999999765
No 466
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.86 E-value=0.00016 Score=75.00 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEee--CCcEE-EEE--CCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVK--SNPFT-VKS--GERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~--~~~~~-v~~--~~~~~~~d~lviAtG~~ 208 (540)
..+.+.+.+.+++.|++++.+ +|+.+..+ ++.+. +.. +...+.++.||+|||..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 456777888888899999888 78887654 23222 222 33578999999999963
No 467
>PRK15000 peroxidase; Provisional
Probab=97.86 E-value=0.00017 Score=65.83 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.++.++++||. .||+.|....+.|.++++++.+ ++.++.+.+|. +.++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 46799999998 5999999999999999999863 57777776652 124566
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. .+|+.+++ ++|++.....+. ++.+++...++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 67876 68987777 689888776653 466777777654
No 468
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=6e-05 Score=74.44 Aligned_cols=34 Identities=38% Similarity=0.518 Sum_probs=31.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEG 125 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~ 125 (540)
...+||||||||.||+.||..+++.|.+.+|+..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 3469999999999999999999999999999976
No 469
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.82 E-value=2.1e-05 Score=82.41 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=37.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHc------CCceEEEcCCCCCCCCcceeecc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA------NLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~------g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
|++|+|||||++||+||+.|++. |++|+|+|+.++ .||.....
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r---~GGr~~T~ 49 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY---LGGKIHSV 49 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC---ccceEEEE
Confidence 46899999999999999999986 379999999998 88887654
No 470
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.82 E-value=2e-05 Score=83.22 Aligned_cols=41 Identities=39% Similarity=0.541 Sum_probs=37.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+||+|||||++||+||..|++.|++|+|+|+++. +||....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~---~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ---PGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC---CCCccce
Confidence 6899999999999999999999999999999988 7776554
No 471
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.82 E-value=2.4e-05 Score=78.29 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=36.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
++||+|||||++|+++|..|++.|.+|+|+|+.+. .||...
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~---iGG~~~ 41 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH---IGGNCY 41 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC---CCCcee
Confidence 36999999999999999999999999999999776 666543
No 472
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.81 E-value=7.7e-05 Score=68.23 Aligned_cols=76 Identities=20% Similarity=0.441 Sum_probs=55.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI--------------------------------------- 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~--------------------------------------- 493 (540)
.+..++.|+.+.||+|+++.+.+.+ ...++.+..+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5788999999999999999999876 122233332211
Q ss_pred ------cCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 009224 494 ------EEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 494 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+++.+++++++|+++|+++ +.+|+. +.|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1234667889999999997 788875 57888888887764
No 473
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.80 E-value=0.00011 Score=69.17 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.|||||+|.|||+|+..+...|-.|+|+|+...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 699999999999999999999888999999654
No 474
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=0.00013 Score=73.35 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=65.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.++|+|||+|+.|+.+|..|.+.|.+ |+|+++... +. .+ .. ......+++.|+++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~-------~~----------~~--~~-----~~~~~~l~~~gi~i 227 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI-------NE----------AP--AG-----KYEIERLIARGVEF 227 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch-------hh----------CC--CC-----HHHHHHHHHcCCEE
Confidence 46899999999999999999999997 999986432 00 00 00 22344578889999
Q ss_pred EEe-eEEEEEeeCCc--EEEE-------------------ECCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVK-------------------SGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~-------------------~~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .++.++.+++. +.+. .++..+.+|.||+|+|..|..
T Consensus 228 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 228 LELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred eeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 887 56666544321 1111 123579999999999998864
No 475
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.77 E-value=0.00044 Score=65.21 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.++.++++|| +.||+.|....+.|.++.+++.+ ++.++-|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3456777777 89999999999999999998853 46666665543 235677
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEee----CCCCHHHHHHHHHh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVP----GVKMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~----g~~~~~~~~~~i~~ 538 (540)
.|++. ..|+.+++ ++|++..... ..++.+++...|+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 88885 57988888 5898887652 23467777777654
No 476
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.77 E-value=0.00011 Score=56.17 Aligned_cols=69 Identities=23% Similarity=0.429 Sum_probs=48.9
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH---HHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP---EIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
+.-+..|+.+||++|++.+..+++. ++.|..+|++++. ++.+..+...+|.++ .+|+. +-|+ +
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~---igG~---~ 72 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKL---IGGS---D 72 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEE---EcCH---H
Confidence 3446789999999999999999753 5777778887763 444556888999974 57764 2333 4
Q ss_pred HHHHHH
Q 009224 531 EYREFI 536 (540)
Q Consensus 531 ~~~~~i 536 (540)
+|.++|
T Consensus 73 ~l~~~l 78 (79)
T TIGR02190 73 ELEAYL 78 (79)
T ss_pred HHHHHh
Confidence 566554
No 477
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.76 E-value=0.00021 Score=75.56 Aligned_cols=82 Identities=28% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKE 531 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 531 (540)
.+..-+..|.++.||+|..+...+++++...+ ++..-.+|..++++++++|++.++|++++ ||+. .+.|..+.++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~ 190 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAE 190 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE--EEecCCCHHH
Confidence 34456888999999999999999999999987 78888999999999999999999999765 6654 4668888888
Q ss_pred HHHHHHh
Q 009224 532 YREFIEA 538 (540)
Q Consensus 532 ~~~~i~~ 538 (540)
+.+.+.+
T Consensus 191 ~~~~l~~ 197 (515)
T TIGR03140 191 LLEKLEE 197 (515)
T ss_pred HHHHHhh
Confidence 8777654
No 478
>PLN02529 lysine-specific histone demethylase 1
Probab=97.76 E-value=3.6e-05 Score=83.26 Aligned_cols=45 Identities=38% Similarity=0.572 Sum_probs=40.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
...++|+|||||+|||+||..|+++|++|+|+|+.+. .||++...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~---~GG~~~t~ 202 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR---PGGRVYTQ 202 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc---CcCceeee
Confidence 3568999999999999999999999999999999888 78877654
No 479
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.76 E-value=3.1e-05 Score=81.67 Aligned_cols=41 Identities=34% Similarity=0.484 Sum_probs=37.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+||+|||||.+||++|..|++.|++|+|+||++. +||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~---~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI---PGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC---CCCceeE
Confidence 5899999999999999999999999999999988 7776654
No 480
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.75 E-value=0.0001 Score=71.54 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHc----CCceE-EEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA----NLKPV-VFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW 168 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~----g~~v~-lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (540)
.+.|.|||+|+-|-..|+.|.+. |.+|. +|+.. +....+.+..+.++..+.+++-
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek--------------------~nm~kiLPeyls~wt~ekir~~ 406 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK--------------------YNMEKILPEYLSQWTIEKIRKG 406 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc--------------------CChhhhhHHHHHHHHHHHHHhc
Confidence 47899999999999999999875 33432 33311 1112344556667777888999
Q ss_pred CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 169 GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 169 ~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
||.++.+ .|.++....+.+.+.. ++.+++.|.||+|+|..|+..
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 9999987 7778777777776665 788999999999999998753
No 481
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.75 E-value=2.7e-05 Score=82.43 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=36.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 97 vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
|+|||||.+||+||..|++.|++|+|+|+++. +||.....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~---~GG~~~t~ 40 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK---PGGRAGVL 40 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC---CcCceEEE
Confidence 68999999999999999999999999999998 88876543
No 482
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.75 E-value=3.5e-05 Score=78.10 Aligned_cols=41 Identities=37% Similarity=0.538 Sum_probs=37.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeecc
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~ 139 (540)
+|+|||||++||+||++|++++ .+++|+|++++ .||.+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r---~GG~l~T~ 44 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR---VGGLLRTV 44 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC---CCceEEEE
Confidence 6999999999999999999999 99999999888 88887654
No 483
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.74 E-value=0.00016 Score=68.33 Aligned_cols=84 Identities=15% Similarity=0.354 Sum_probs=61.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+.+++.|..+.||+|+++.+.+.++.+.. ++.+..+...
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 567899999999999999999988876542 3444433220
Q ss_pred ------------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 495 ------------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 495 ------------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++.++.++++++++|++++-.....+....|+.+.++|.+.|..
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 01135677899999999887532356678899999999998763
No 484
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.73 E-value=0.0003 Score=73.38 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=67.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
..++|+|||||..|+.+|..|.+.|. +|+++++... . .++. . ....+.+++.|++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~-------~----------~~~~--~-----~~~~~~~~~~GV~ 327 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR-------E----------EMPA--S-----EEEVEHAKEEGVE 327 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc-------c----------cCCC--C-----HHHHHHHHHCCCE
Confidence 45799999999999999999999998 8999996432 0 0110 0 1124556788999
Q ss_pred EEEe-eEEEEEeeCCc---EEEEE------------------CCeEEEecEEEEccCCCCCC
Q 009224 172 LHQE-DVEFIDVKSNP---FTVKS------------------GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~---~~v~~------------------~~~~~~~d~lviAtG~~~~~ 211 (540)
++.+ .+..+..+++. +.+.. ++..+.+|.||+|+|..|..
T Consensus 328 i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 328 FEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred EEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 9987 66666655432 33321 23469999999999998863
No 485
>PLN02568 polyamine oxidase
Probab=97.72 E-value=4.3e-05 Score=80.63 Aligned_cols=43 Identities=37% Similarity=0.481 Sum_probs=38.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-----CceEEEcCCCCCCCCcceeecc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-----LKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-----~~v~lie~~~~~~~~gg~~~~~ 139 (540)
.+||+|||||++||+||..|++.| ++|+|+|+.+. +||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~---~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR---IGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC---cCCeEEEE
Confidence 478999999999999999999887 89999999988 88887654
No 486
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.72 E-value=0.00037 Score=62.86 Aligned_cols=96 Identities=17% Similarity=0.334 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCC--cccEEEEEe--CCe
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM--GTPCVQFFK--NKE 518 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~--~g~ 518 (540)
.++.++......++++.|..........+...++++++++.+++.|+.+|++..+.+.+.+++. .+|+++++. +++
T Consensus 85 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 85 ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 3445544444445888888777888999999999999999989999999999999999999998 899999996 344
Q ss_pred EEEEeeCCCCHHHHHHHHHh
Q 009224 519 MIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~ 538 (540)
......+..+.+.|.+|+++
T Consensus 165 ~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 165 YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEE--SSCGCHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHhcC
Confidence 33334788999999999974
No 487
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.71 E-value=0.00014 Score=66.81 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=58.1
Q ss_pred EEEeCCccHHHHHHHHHhcCCe-EEEEEecccccc---------------------------------------------
Q 009224 244 AVVGGGDTATEEAIYLTKFARH-VHLLVRREQLRA--------------------------------------------- 277 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~-v~li~~~~~~~~--------------------------------------------- 277 (540)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 999998754311
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc--ccCcc
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH--SPNSQ 342 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~ 342 (540)
..++++.+.++.++++.++++|.++..++++ -.+.+ .+++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~-----~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTT-----RDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEE-----TTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEE-----EecceeeeeeEEEeeeccCCCCcc
Confidence 1123444556678889999999999988654 22443 22267889999999996 45433
No 488
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.71 E-value=0.00035 Score=53.42 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=51.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
+..|..+||++|..++..|++ .++.|..+|++++++... ..+...+|++++ ++. .+.|+ ..++|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf-~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGF-RPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecC-CHHHHH
Confidence 567889999999999999865 268899999998886543 346678999754 442 35566 556687
Q ss_pred HHHHh
Q 009224 534 EFIEA 538 (540)
Q Consensus 534 ~~i~~ 538 (540)
+++..
T Consensus 71 ~~~~~ 75 (81)
T PRK10329 71 RLHPA 75 (81)
T ss_pred HHHHh
Confidence 77654
No 489
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.71 E-value=0.00033 Score=64.59 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=62.0
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHcCCC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAAGIM 506 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~~i~ 506 (540)
.+++.|+++|||.|....+.|.++.+++.+ ++.++-+.++. +.++++.|++.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 456788999999999999999999999853 57777777653 22456677763
Q ss_pred -------cccEEEEE-eCCeEEEEeeC----CCCHHHHHHHHHh
Q 009224 507 -------GTPCVQFF-KNKEMIRTVPG----VKMKKEYREFIEA 538 (540)
Q Consensus 507 -------~~Pt~~~~-~~g~~~~~~~g----~~~~~~~~~~i~~ 538 (540)
.+|+++++ ++|++...+.. .+..+++...|++
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 57988888 68888765432 2456777777764
No 490
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.68 E-value=0.00022 Score=74.04 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=65.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||..|+.+|..|.+.|.+|+++++... . .++. . ....+.+++.|+++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~-------~----------~~~~--~-----~~~~~~l~~~GV~~ 326 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR-------E----------DMTA--R-----VEEIAHAEEEGVKF 326 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc-------c----------cCCC--C-----HHHHHHHHhCCCEE
Confidence 457999999999999999999999999999996432 0 1110 0 11234567889999
Q ss_pred EEe-eEEEEEeeC-CcE---EEE-------------------ECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKS-NPF---TVK-------------------SGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~-~~~---~v~-------------------~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.+..++ +.+ .+. .+...+.+|.||+|+|..|...
T Consensus 327 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 327 HFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred EeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence 876 555554322 222 221 0113689999999999987653
No 491
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.68 E-value=0.00039 Score=63.76 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=61.2
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHcCCC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAAGIM 506 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~~i~ 506 (540)
.+++.|+++|||.|....+.|+++.+++.+ ++.++.|.++. +.++++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 455678899999999999999999999863 57788777653 23567778875
Q ss_pred ----c----ccEEEEE-eCCeEEEEeeC----CCCHHHHHHHHHh
Q 009224 507 ----G----TPCVQFF-KNKEMIRTVPG----VKMKKEYREFIEA 538 (540)
Q Consensus 507 ----~----~Pt~~~~-~~g~~~~~~~g----~~~~~~~~~~i~~ 538 (540)
+ +|+.+++ ++|++.....+ .++.+++...|++
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2 3446666 78888776654 3456778777765
No 492
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.67 E-value=0.00059 Score=64.81 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc----CCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA----NLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~----g~~v~lie~~~~ 128 (540)
...||+|||||-.|.+.|+.|.++ |++|+++|+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 467999999999999999999865 799999999654
No 493
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.66 E-value=0.0006 Score=70.75 Aligned_cols=104 Identities=21% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----------------------------------------
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---------------------------------------- 277 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---------------------------------------- 277 (540)
...++|+|||+|++|+-+|..|.+.|.+|+++++++.+.+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 3468999999999999999999999999999987653211
Q ss_pred -------------------------cHHHHHHHhcCCCeE--EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccE
Q 009224 278 -------------------------SRAMQDRVFNNPNIT--VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKG 330 (540)
Q Consensus 278 -------------------------~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~ 330 (540)
..++++...+..|+. +.++++|.++...++ . ..|...+ ..+...+..+|.
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~-~-w~V~~~~-~~~~~~~~~~d~ 164 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG-K-WRVQSKN-SGGFSKDEIFDA 164 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCC-e-EEEEEEc-CCCceEEEEcCE
Confidence 011222333455776 888999999987643 2 2233322 112234567999
Q ss_pred EEEecc--cccCcccc
Q 009224 331 LFYGIG--HSPNSQLL 344 (540)
Q Consensus 331 vi~a~G--~~p~~~~~ 344 (540)
||+|+| .+|+..-+
T Consensus 165 VIvAtG~~~~P~~P~i 180 (461)
T PLN02172 165 VVVCNGHYTEPNVAHI 180 (461)
T ss_pred EEEeccCCCCCcCCCC
Confidence 999999 46664433
No 494
>PRK13189 peroxiredoxin; Provisional
Probab=97.65 E-value=0.00042 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=62.4
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC---------------------------CHHHHHHc
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
++ .+++.|+++||+.|....+.|+++++++. .++.++.+.++. +.++++.|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 44 55567789999999999999999999985 356777666652 23456777
Q ss_pred CCC-------cccEEEEE-eCCeEEEEee----CCCCHHHHHHHHHhh
Q 009224 504 GIM-------GTPCVQFF-KNKEMIRTVP----GVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~-------~~Pt~~~~-~~g~~~~~~~----g~~~~~~~~~~i~~~ 539 (540)
++. .+|+++++ ++|++..... ..++.+++...|+.+
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 764 46877777 6888876654 334677787777653
No 495
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.65 E-value=6.8e-05 Score=76.82 Aligned_cols=199 Identities=17% Similarity=0.125 Sum_probs=109.9
Q ss_pred cccEEEECCCH-HHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGP-AGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~-aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.++.+++|.++ +++..|.++...+- +.. .+.. ....+|.+-.-.....+...++...+.+...-
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~----~C~------~~cp-----~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~ 69 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGD----PCI------TGCP-----VHNDIPEPIGLVREGVDHEAIKLIHKTNNLPA 69 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCC----ccc------cCCc-----CCCcCCCHHHHHhcCCcHHHHHHHHHhCCCcc
Confidence 47899999999 88888877766542 110 1111 11122222111111112333333333333333
Q ss_pred EEeeEEEEE--eeCCcEEEEECCeEEEecEEEEccCCCCCCC-CCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 173 HQEDVEFID--VKSNPFTVKSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 173 ~~~~v~~i~--~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~-~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
..++|--.. -++... +..++..+.++.|..+.|...... .+|+.. .....+++|+|||+|
T Consensus 70 ~~gRvcp~~~~ceg~cv-~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~----------------~~~~tg~~VaviGaG 132 (457)
T COG0493 70 ITGRVCPLGNLCEGACV-LGIEELPVNIGALERAIGDKADREGWIPGEL----------------PGSRTGKKVAVIGAG 132 (457)
T ss_pred ccCccCCCCCceeeeee-eccCCCchhhhhHHHHHhhHHHHhCCCCCCC----------------CCCCCCCEEEEECCC
Confidence 333332211 111111 111345677777777777543211 122210 012457999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccc--------------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEE
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRA--------------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILL 315 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~--------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~ 315 (540)
+.|+.+|..|++.|..|+++.+.+.... ..+...+.|++.|++|+.+.++-. + +++
T Consensus 133 PAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~-------it~ 202 (457)
T COG0493 133 PAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---D-------ITL 202 (457)
T ss_pred chHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---c-------CCH
Confidence 9999999999999999999998876533 122233457888999999876531 1 222
Q ss_pred EEccCCceEEEEccEEEEeccc-ccC
Q 009224 316 RKVDTGEESVLEAKGLFYGIGH-SPN 340 (540)
Q Consensus 316 ~~~~~g~~~~i~~D~vi~a~G~-~p~ 340 (540)
.. ..-++|.|++++|. .|.
T Consensus 203 ~~------L~~e~Dav~l~~G~~~~~ 222 (457)
T COG0493 203 EE------LLKEYDAVFLATGAGKPR 222 (457)
T ss_pred HH------HHHhhCEEEEeccccCCC
Confidence 11 11345999999996 444
No 496
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.64 E-value=0.00021 Score=72.54 Aligned_cols=94 Identities=18% Similarity=0.279 Sum_probs=57.8
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc--------------------------------------------
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------------------------------- 277 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------------------------------- 277 (540)
+|+|||||++|+-+|..+++.|.+|.++++.+.+..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 489999999999999999999999999999876421
Q ss_pred -----------------------------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 278 -----------------------------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 278 -----------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
..+.+...+++.||+++++++|.++..++++ +..|.. .+...+.+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~-----~~~~~~~a 155 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKT-----KNGGEYEA 155 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEE-----TTTEEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeec-----cCcccccC
Confidence 0112223356789999999999999876542 222333 23467999
Q ss_pred cEEEEecccccCc
Q 009224 329 KGLFYGIGHSPNS 341 (540)
Q Consensus 329 D~vi~a~G~~p~~ 341 (540)
|.||+|+|-....
T Consensus 156 ~~vILAtGG~S~p 168 (409)
T PF03486_consen 156 DAVILATGGKSYP 168 (409)
T ss_dssp SEEEE----SSSG
T ss_pred CEEEEecCCCCcc
Confidence 9999999976543
No 497
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.64 E-value=0.00014 Score=72.59 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=52.4
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccce
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQV 348 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~ 348 (540)
.+.+++.+.+..|++++++++|+++....+|... |.+.+..++....+.++.|++..|-..-.-+-+.++
T Consensus 184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~-v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWE-VKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred HHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEE-EEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 4556666555569999999999999998877544 777777778889999999999999765433333444
No 498
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.64 E-value=0.00034 Score=52.30 Aligned_cols=66 Identities=26% Similarity=0.500 Sum_probs=47.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH---HHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE---IAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
++.|..+|||+|.+.+..+++. ++.|..+|++++.+ +.+..+...+|.+ |.+|+.+ - ..++|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---g---g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---G---GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---e---CHHHHH
Confidence 5678899999999999888853 57777888877653 3334588899995 5677643 2 346677
Q ss_pred HHH
Q 009224 534 EFI 536 (540)
Q Consensus 534 ~~i 536 (540)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 765
No 499
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.63 E-value=6.6e-05 Score=81.70 Aligned_cols=45 Identities=40% Similarity=0.569 Sum_probs=40.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
...++|+|||||++|++||+.|.+.|++|+|+|+.+. +||++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r---~GGr~~t~ 280 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR---PGGRVKTM 280 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc---CCCccccc
Confidence 3468999999999999999999999999999999988 88876544
No 500
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.62 E-value=0.0003 Score=67.91 Aligned_cols=117 Identities=24% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC--------CCcceeeccC-----------------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG--------VPGGQLMTTT----------------------- 140 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~--------~~gg~~~~~~----------------------- 140 (540)
....||+|||||.+|.+.|+.|++.|.+|.+|||+-.-. -|||.+....
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 445899999999999999999999999999999954322 2344332210
Q ss_pred -c-------cccCCCCCCC--CChHHHHHHHHHHHH-HhCCEEEEeeEEEEEeeCCc---EEEEE-CC--eEEEecEEEE
Q 009224 141 -E-------VENFPGFPDG--ITGPDLMDRMRRQAE-RWGAELHQEDVEFIDVKSNP---FTVKS-GE--RKVKCHSIVF 203 (540)
Q Consensus 141 -~-------~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~v~~~~~~v~~i~~~~~~---~~v~~-~~--~~~~~d~lvi 203 (540)
. ..+++.-+.. +..-.+.+.+++... ..++++..++|.++-.+++. ++.+. ++ .+..+---|+
T Consensus 123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvV 202 (509)
T KOG1298|consen 123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVV 202 (509)
T ss_pred CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEE
Confidence 0 0111111110 111245555655443 34889999988887655552 23333 22 2345566789
Q ss_pred ccCCC
Q 009224 204 ATGAT 208 (540)
Q Consensus 204 AtG~~ 208 (540)
|-|+-
T Consensus 203 CDGcf 207 (509)
T KOG1298|consen 203 CDGCF 207 (509)
T ss_pred ecchh
Confidence 99973
Done!