Query 009224
Match_columns 540
No_of_seqs 504 out of 4412
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 21:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a5l_A Thioredoxin reductase; 100.0 1.3E-45 4.5E-50 364.6 31.5 310 92-404 2-313 (314)
2 3itj_A Thioredoxin reductase 1 100.0 9.5E-44 3.3E-48 354.9 30.4 314 91-405 19-337 (338)
3 2q7v_A Thioredoxin reductase; 100.0 1.1E-42 3.8E-47 345.3 33.2 306 93-407 7-316 (325)
4 1vdc_A NTR, NADPH dependent th 100.0 5.1E-43 1.7E-47 349.0 30.8 311 94-407 8-327 (333)
5 4gcm_A TRXR, thioredoxin reduc 100.0 7.3E-43 2.5E-47 344.6 31.3 303 93-404 5-307 (312)
6 3r9u_A Thioredoxin reductase; 100.0 5.8E-43 2E-47 345.7 28.6 302 93-405 3-314 (315)
7 2q0l_A TRXR, thioredoxin reduc 100.0 6E-42 2.1E-46 337.9 31.1 303 94-404 1-310 (311)
8 2a87_A TRXR, TR, thioredoxin r 100.0 1.7E-42 5.9E-47 345.4 27.4 308 92-408 12-321 (335)
9 1trb_A Thioredoxin reductase; 100.0 9.4E-42 3.2E-46 337.9 28.4 305 94-406 5-317 (320)
10 3f8d_A Thioredoxin reductase ( 100.0 1.9E-41 6.4E-46 336.0 30.3 303 94-407 15-321 (323)
11 3cty_A Thioredoxin reductase; 100.0 1.8E-41 6.2E-46 335.7 29.0 303 93-405 15-318 (319)
12 1fl2_A Alkyl hydroperoxide red 100.0 2.4E-40 8.3E-45 326.2 30.0 303 95-407 2-309 (310)
13 1hyu_A AHPF, alkyl hydroperoxi 100.0 5.1E-39 1.8E-43 337.8 31.6 303 93-406 211-519 (521)
14 3lzw_A Ferredoxin--NADP reduct 100.0 6.2E-39 2.1E-43 319.2 29.3 303 93-407 6-319 (332)
15 4eqs_A Coenzyme A disulfide re 100.0 8.1E-41 2.8E-45 344.0 15.3 315 96-430 2-344 (437)
16 2vdc_G Glutamate synthase [NAD 100.0 1.3E-40 4.5E-45 342.7 15.9 339 41-406 64-447 (456)
17 2zbw_A Thioredoxin reductase; 100.0 4.3E-38 1.5E-42 313.7 31.1 304 93-407 4-321 (335)
18 4fk1_A Putative thioredoxin re 100.0 4.5E-39 1.5E-43 316.1 22.3 292 93-406 5-303 (304)
19 3fbs_A Oxidoreductase; structu 100.0 5.7E-38 1.9E-42 307.2 26.5 289 94-407 2-296 (297)
20 3dk9_A Grase, GR, glutathione 100.0 3.8E-38 1.3E-42 329.0 24.2 322 93-431 19-390 (478)
21 3ab1_A Ferredoxin--NADP reduct 100.0 3.2E-37 1.1E-41 310.5 29.5 304 93-407 13-332 (360)
22 3urh_A Dihydrolipoyl dehydroge 100.0 2.7E-37 9.3E-42 323.5 28.5 331 93-438 24-403 (491)
23 1zmd_A Dihydrolipoyl dehydroge 100.0 2.1E-37 7E-42 323.1 25.4 330 93-437 5-384 (474)
24 3l8k_A Dihydrolipoyl dehydroge 100.0 1.3E-37 4.4E-42 323.6 23.1 328 94-438 4-376 (466)
25 3oc4_A Oxidoreductase, pyridin 100.0 1.1E-37 3.7E-42 323.1 21.3 314 95-430 3-346 (452)
26 1v59_A Dihydrolipoamide dehydr 100.0 6.3E-37 2.2E-41 319.9 26.5 330 94-437 5-389 (478)
27 1mo9_A ORF3; nucleotide bindin 100.0 2.5E-37 8.5E-42 325.6 23.0 323 90-430 39-409 (523)
28 3dgz_A Thioredoxin reductase 2 100.0 1.4E-37 4.7E-42 325.3 20.1 326 93-431 5-385 (488)
29 3dgh_A TRXR-1, thioredoxin red 100.0 2.8E-37 9.5E-42 322.7 21.8 325 93-431 8-385 (483)
30 3lad_A Dihydrolipoamide dehydr 100.0 3.1E-36 1E-40 314.5 29.1 331 93-438 2-383 (476)
31 1ojt_A Surface protein; redox- 100.0 2.5E-36 8.5E-41 315.3 28.4 326 93-437 5-388 (482)
32 2qae_A Lipoamide, dihydrolipoy 100.0 1.2E-36 4.2E-41 316.7 25.5 327 94-437 2-379 (468)
33 1dxl_A Dihydrolipoamide dehydr 100.0 7.4E-37 2.5E-41 318.7 23.7 329 93-437 5-381 (470)
34 3qfa_A Thioredoxin reductase 1 100.0 5.8E-37 2E-41 322.3 22.2 327 93-431 31-413 (519)
35 3ic9_A Dihydrolipoamide dehydr 100.0 1E-36 3.4E-41 318.5 23.7 318 94-431 8-372 (492)
36 2wpf_A Trypanothione reductase 100.0 4.6E-37 1.6E-41 321.1 20.9 317 93-431 6-388 (495)
37 1ebd_A E3BD, dihydrolipoamide 100.0 3.2E-36 1.1E-40 312.5 27.0 324 94-437 3-372 (455)
38 4b1b_A TRXR, thioredoxin reduc 100.0 1.5E-37 5.1E-42 324.8 16.2 320 94-430 42-416 (542)
39 2a8x_A Dihydrolipoyl dehydroge 100.0 3.9E-36 1.3E-40 312.6 26.2 324 94-437 3-375 (464)
40 1fec_A Trypanothione reductase 100.0 2.8E-36 9.6E-41 315.0 24.9 316 94-431 3-384 (490)
41 2hqm_A GR, grase, glutathione 100.0 1.8E-36 6.1E-41 315.9 23.1 318 93-431 10-383 (479)
42 1ges_A Glutathione reductase; 100.0 8.2E-37 2.8E-41 315.9 19.4 314 93-431 3-362 (450)
43 2r9z_A Glutathione amide reduc 100.0 2.5E-36 8.6E-41 313.3 22.5 314 93-431 3-361 (463)
44 4a9w_A Monooxygenase; baeyer-v 100.0 6E-36 2.1E-40 300.6 24.0 292 94-404 3-353 (357)
45 3kd9_A Coenzyme A disulfide re 100.0 2E-37 6.9E-42 320.9 13.2 314 94-430 3-347 (449)
46 1onf_A GR, grase, glutathione 100.0 8E-36 2.7E-40 312.5 24.3 315 94-431 2-404 (500)
47 2bc0_A NADH oxidase; flavoprot 100.0 7.8E-37 2.7E-41 319.6 16.2 318 94-429 35-392 (490)
48 4dna_A Probable glutathione re 100.0 3.4E-36 1.2E-40 312.7 20.7 315 94-431 5-364 (463)
49 3ntd_A FAD-dependent pyridine 100.0 4E-37 1.4E-41 328.4 13.9 322 94-430 1-370 (565)
50 1xhc_A NADH oxidase /nitrite r 100.0 4.8E-37 1.7E-41 308.7 13.4 302 94-428 8-327 (367)
51 1xdi_A RV3303C-LPDA; reductase 100.0 8.2E-36 2.8E-40 312.7 23.1 322 95-436 3-381 (499)
52 2eq6_A Pyruvate dehydrogenase 100.0 1.6E-35 5.5E-40 307.4 24.6 317 94-430 6-364 (464)
53 3klj_A NAD(FAD)-dependent dehy 100.0 9.5E-38 3.3E-42 315.3 7.4 296 93-427 8-323 (385)
54 1zk7_A HGII, reductase, mercur 100.0 5.9E-35 2E-39 303.9 28.6 321 93-436 3-372 (467)
55 3o0h_A Glutathione reductase; 100.0 2.9E-35 9.9E-40 307.4 25.8 314 94-431 26-384 (484)
56 3iwa_A FAD-dependent pyridine 100.0 2E-36 6.8E-41 315.5 16.6 317 94-430 3-361 (472)
57 3ics_A Coenzyme A-disulfide re 100.0 6.9E-37 2.4E-41 327.5 12.8 318 93-430 35-386 (588)
58 2cdu_A NADPH oxidase; flavoenz 100.0 1.9E-36 6.4E-41 313.9 14.8 318 95-430 1-349 (452)
59 1gte_A Dihydropyrimidine dehyd 100.0 3.5E-36 1.2E-40 338.7 17.6 358 41-424 121-534 (1025)
60 3lxd_A FAD-dependent pyridine 100.0 1.5E-35 5E-40 303.9 20.3 287 93-399 8-319 (415)
61 2yqu_A 2-oxoglutarate dehydrog 100.0 5.6E-35 1.9E-39 303.1 24.4 315 95-430 2-358 (455)
62 1lvl_A Dihydrolipoamide dehydr 100.0 3E-35 1E-39 304.9 21.9 310 94-430 5-361 (458)
63 4g6h_A Rotenone-insensitive NA 100.0 1.4E-35 4.8E-40 309.2 17.0 297 92-403 40-401 (502)
64 1nhp_A NADH peroxidase; oxidor 100.0 1E-35 3.5E-40 307.9 15.6 314 95-429 1-347 (447)
65 3cgb_A Pyridine nucleotide-dis 100.0 1.4E-35 4.6E-40 309.4 16.0 315 94-429 36-384 (480)
66 3ef6_A Toluene 1,2-dioxygenase 100.0 8.1E-36 2.8E-40 304.9 13.8 284 95-400 3-308 (410)
67 2x8g_A Thioredoxin glutathione 100.0 9.9E-35 3.4E-39 311.3 22.5 324 92-430 105-491 (598)
68 3fg2_P Putative rubredoxin red 100.0 3.8E-35 1.3E-39 299.6 17.4 285 95-399 2-308 (404)
69 2v3a_A Rubredoxin reductase; a 100.0 3.7E-34 1.3E-38 290.3 21.6 284 94-399 4-304 (384)
70 1q1r_A Putidaredoxin reductase 100.0 1.8E-34 6.3E-39 296.5 18.4 290 94-399 4-317 (431)
71 2gqw_A Ferredoxin reductase; f 100.0 2.3E-34 7.9E-39 293.8 16.7 278 93-400 6-307 (408)
72 3d1c_A Flavin-containing putat 100.0 1.5E-32 5.3E-37 277.2 28.6 291 94-403 4-339 (369)
73 3sx6_A Sulfide-quinone reducta 100.0 2.2E-34 7.7E-39 296.8 15.3 298 94-408 4-349 (437)
74 1cjc_A Protein (adrenodoxin re 100.0 6.4E-34 2.2E-38 293.7 15.7 291 93-407 5-399 (460)
75 2xve_A Flavin-containing monoo 100.0 3E-32 1E-36 282.3 28.3 277 95-399 3-337 (464)
76 1lqt_A FPRA; NADP+ derivative, 100.0 4E-33 1.4E-37 287.5 16.1 288 94-407 3-391 (456)
77 3hyw_A Sulfide-quinone reducta 100.0 8.8E-34 3E-38 291.5 10.2 298 95-410 3-340 (430)
78 3h28_A Sulfide-quinone reducta 100.0 3.1E-33 1.1E-37 287.8 8.9 297 95-409 3-339 (430)
79 3h8l_A NADH oxidase; membrane 100.0 1.9E-32 6.4E-37 280.4 14.6 297 94-411 1-344 (409)
80 1o94_A Tmadh, trimethylamine d 100.0 1.1E-32 3.6E-37 300.5 13.1 280 91-408 386-705 (729)
81 2gag_A Heterotetrameric sarcos 100.0 1E-31 3.5E-36 300.4 20.4 290 93-405 127-446 (965)
82 1m6i_A Programmed cell death p 100.0 1.7E-32 5.9E-37 286.4 12.2 298 92-399 9-350 (493)
83 3k30_A Histamine dehydrogenase 100.0 2.9E-32 9.8E-37 296.1 12.9 276 90-407 387-679 (690)
84 3vrd_B FCCB subunit, flavocyto 100.0 7.8E-32 2.7E-36 275.1 13.2 293 94-407 2-328 (401)
85 2gv8_A Monooxygenase; FMO, FAD 100.0 8.8E-30 3E-34 263.4 24.1 280 93-399 5-358 (447)
86 3s5w_A L-ornithine 5-monooxyge 100.0 1.5E-29 5E-34 263.3 22.9 303 93-401 29-447 (463)
87 1ps9_A 2,4-dienoyl-COA reducta 100.0 4.9E-30 1.7E-34 277.8 18.6 258 91-398 370-671 (671)
88 3gwf_A Cyclohexanone monooxyge 100.0 7E-28 2.4E-32 253.2 27.1 295 94-405 8-459 (540)
89 1y56_A Hypothetical protein PH 100.0 2.1E-29 7E-34 263.1 13.7 259 93-403 107-377 (493)
90 3uox_A Otemo; baeyer-villiger 99.9 6.1E-26 2.1E-30 238.7 28.8 179 93-274 8-219 (545)
91 1w4x_A Phenylacetone monooxyge 99.9 8.5E-25 2.9E-29 231.0 31.8 297 93-406 15-469 (542)
92 4ap3_A Steroid monooxygenase; 99.9 9.2E-25 3.1E-29 229.9 31.1 177 93-274 20-225 (549)
93 4b63_A L-ornithine N5 monooxyg 99.9 3E-20 1E-24 193.9 29.2 284 90-376 35-457 (501)
94 2av4_A Thioredoxin-like protei 99.9 4.6E-22 1.6E-26 167.9 11.8 104 436-539 23-137 (160)
95 3zzx_A Thioredoxin; oxidoreduc 99.9 2.5E-21 8.6E-26 156.8 15.6 100 438-539 4-104 (105)
96 2qsi_A Putative hydrogenase ex 99.9 9.2E-22 3.2E-26 163.9 11.1 99 442-540 22-122 (137)
97 2qgv_A Hydrogenase-1 operon pr 99.8 3E-21 1E-25 161.5 9.5 99 441-540 23-124 (140)
98 3qfa_C Thioredoxin; protein-pr 99.8 4.8E-19 1.6E-23 146.8 13.6 100 439-540 16-116 (116)
99 2ywl_A Thioredoxin reductase r 99.8 3E-19 1E-23 160.5 13.3 154 242-407 3-175 (180)
100 3gnj_A Thioredoxin domain prot 99.8 6.4E-19 2.2E-23 144.7 14.1 100 441-540 10-109 (111)
101 4euy_A Uncharacterized protein 99.8 1E-19 3.4E-24 148.0 8.3 96 443-540 9-104 (105)
102 3fpz_A Thiazole biosynthetic e 99.8 4.6E-22 1.6E-26 196.7 -7.5 254 93-403 64-325 (326)
103 1w4v_A Thioredoxin, mitochondr 99.8 1.1E-18 3.7E-23 145.4 14.1 102 439-540 17-118 (119)
104 1gh2_A Thioredoxin-like protei 99.8 9E-19 3.1E-23 142.9 13.1 103 436-540 3-106 (107)
105 3gix_A Thioredoxin-like protei 99.8 7.3E-19 2.5E-23 152.3 12.1 102 438-539 7-119 (149)
106 1dby_A Chloroplast thioredoxin 99.8 1.8E-18 6.1E-23 141.1 13.4 100 441-540 7-106 (107)
107 2trx_A Thioredoxin; electron t 99.8 1.6E-18 5.3E-23 141.7 12.9 99 442-540 9-107 (108)
108 3m9j_A Thioredoxin; oxidoreduc 99.8 4.1E-18 1.4E-22 138.3 15.3 102 437-540 3-105 (105)
109 2voc_A Thioredoxin; electron t 99.8 1.8E-18 6.2E-23 142.3 13.3 97 442-540 8-104 (112)
110 3die_A Thioredoxin, TRX; elect 99.8 1.8E-18 6.2E-23 140.7 13.2 97 442-540 10-106 (106)
111 3f3q_A Thioredoxin-1; His TAG, 99.8 3.4E-18 1.1E-22 139.9 14.2 99 439-540 11-109 (109)
112 1fb6_A Thioredoxin M; electron 99.8 2.4E-18 8.3E-23 139.6 13.2 99 442-540 7-105 (105)
113 1xwb_A Thioredoxin; dimerizati 99.8 7.6E-18 2.6E-22 136.9 16.1 102 438-540 4-106 (106)
114 3tco_A Thioredoxin (TRXA-1); d 99.8 3.8E-18 1.3E-22 139.5 14.3 99 441-540 10-108 (109)
115 1t00_A Thioredoxin, TRX; redox 99.8 1.8E-18 6.1E-23 142.4 12.1 99 442-540 12-110 (112)
116 3hz4_A Thioredoxin; NYSGXRC, P 99.8 2.1E-18 7.1E-23 148.1 13.0 100 441-540 12-111 (140)
117 2i4a_A Thioredoxin; acidophIle 99.8 3.5E-18 1.2E-22 139.2 13.8 99 442-540 9-107 (107)
118 1ep7_A Thioredoxin CH1, H-type 99.8 3.5E-18 1.2E-22 140.6 13.7 103 437-540 5-110 (112)
119 2ppt_A Thioredoxin-2; thiredox 99.8 2.7E-18 9.2E-23 149.9 13.5 98 442-540 54-151 (155)
120 1nsw_A Thioredoxin, TRX; therm 99.8 3.7E-18 1.3E-22 138.6 13.0 97 443-540 8-104 (105)
121 2o8v_B Thioredoxin 1; disulfid 99.8 1.4E-18 4.9E-23 146.5 10.7 99 442-540 29-127 (128)
122 1xfl_A Thioredoxin H1; AT3G510 99.8 9.6E-18 3.3E-22 140.6 15.6 102 437-540 19-123 (124)
123 2vim_A Thioredoxin, TRX; thior 99.8 1.2E-17 3.9E-22 135.4 15.2 100 439-540 4-104 (104)
124 2vlu_A Thioredoxin, thioredoxi 99.8 8.8E-18 3E-22 140.5 14.4 101 438-540 16-119 (122)
125 1thx_A Thioredoxin, thioredoxi 99.8 6.5E-18 2.2E-22 139.6 13.4 100 441-540 13-112 (115)
126 1r26_A Thioredoxin; redox-acti 99.8 8.2E-18 2.8E-22 141.1 14.2 102 436-540 21-122 (125)
127 1qgv_A Spliceosomal protein U5 99.8 3E-18 1E-22 147.2 11.6 102 438-539 7-119 (142)
128 2xc2_A Thioredoxinn; oxidoredu 99.8 8.9E-18 3E-22 139.4 14.1 102 436-540 15-117 (117)
129 2oe3_A Thioredoxin-3; electron 99.8 1.1E-17 3.7E-22 138.0 14.1 98 439-539 17-114 (114)
130 1x5d_A Protein disulfide-isome 99.8 5.2E-18 1.8E-22 144.2 12.0 98 442-539 14-115 (133)
131 3h79_A Thioredoxin-like protei 99.8 4.5E-18 1.5E-22 143.4 11.4 99 441-539 21-126 (127)
132 2i1u_A Thioredoxin, TRX, MPT46 99.7 7.4E-18 2.5E-22 140.7 12.1 99 442-540 19-117 (121)
133 3d6i_A Monothiol glutaredoxin- 99.7 1.3E-17 4.5E-22 137.1 13.4 101 439-540 5-108 (112)
134 3p2a_A Thioredoxin 2, putative 99.7 7.8E-18 2.7E-22 146.0 12.5 98 442-540 45-142 (148)
135 2yzu_A Thioredoxin; redox prot 99.7 1.5E-17 5.1E-22 135.9 13.5 98 442-540 8-105 (109)
136 2j23_A Thioredoxin; immune pro 99.7 1.1E-17 3.8E-22 139.7 12.5 104 435-540 16-120 (121)
137 3evi_A Phosducin-like protein 99.7 6.7E-18 2.3E-22 139.1 10.9 94 442-539 10-112 (118)
138 1syr_A Thioredoxin; SGPP, stru 99.7 2.6E-17 8.9E-22 135.3 14.4 98 440-540 14-111 (112)
139 3uvt_A Thioredoxin domain-cont 99.7 2E-17 6.8E-22 135.7 13.0 96 442-539 12-110 (111)
140 3ul3_B Thioredoxin, thioredoxi 99.7 1.2E-17 4.2E-22 140.9 12.0 90 450-539 39-128 (128)
141 2e0q_A Thioredoxin; electron t 99.7 2E-17 6.7E-22 133.8 12.5 97 442-540 6-102 (104)
142 2wz9_A Glutaredoxin-3; protein 99.7 4.4E-17 1.5E-21 142.0 14.9 102 437-540 15-117 (153)
143 2l6c_A Thioredoxin; oxidoreduc 99.7 1.8E-17 6E-22 135.9 11.3 96 441-539 9-104 (110)
144 1ti3_A Thioredoxin H, PTTRXH1; 99.7 3.7E-17 1.3E-21 134.6 13.3 102 437-540 7-111 (113)
145 2f51_A Thioredoxin; electron t 99.7 3.5E-17 1.2E-21 135.9 13.1 97 441-539 11-111 (118)
146 3hxs_A Thioredoxin, TRXP; elec 99.7 2.9E-17 1E-21 141.1 12.9 99 441-540 28-138 (141)
147 1v98_A Thioredoxin; oxidoreduc 99.7 2.8E-17 9.7E-22 141.0 12.7 98 442-540 40-137 (140)
148 2dml_A Protein disulfide-isome 99.7 1.1E-17 3.9E-22 141.5 9.9 98 442-539 24-122 (130)
149 2pu9_C TRX-F, thioredoxin F-ty 99.7 2.8E-17 9.6E-22 134.9 11.9 96 442-539 12-109 (111)
150 2vm1_A Thioredoxin, thioredoxi 99.7 6.2E-17 2.1E-21 134.3 14.0 102 437-540 9-113 (118)
151 1oaz_A Thioredoxin 1; immune s 99.7 5.8E-18 2E-22 141.7 7.6 99 442-540 10-122 (123)
152 2l5l_A Thioredoxin; structural 99.7 3E-17 1E-21 140.1 12.1 98 441-539 15-124 (136)
153 3aps_A DNAJ homolog subfamily 99.7 1.1E-17 3.7E-22 140.0 8.9 100 441-540 9-112 (122)
154 3d22_A TRXH4, thioredoxin H-ty 99.7 6.1E-17 2.1E-21 138.7 13.4 101 437-539 27-130 (139)
155 3dxb_A Thioredoxin N-terminall 99.7 3.4E-17 1.2E-21 152.2 12.3 100 441-540 18-117 (222)
156 2e5v_A L-aspartate oxidase; ar 99.7 1.9E-18 6.3E-23 179.0 3.9 280 96-403 1-369 (472)
157 3cxg_A Putative thioredoxin; m 99.7 5E-17 1.7E-21 138.0 12.1 102 436-540 22-128 (133)
158 2dj1_A Protein disulfide-isome 99.7 4.4E-17 1.5E-21 139.8 11.9 98 441-540 23-123 (140)
159 1faa_A Thioredoxin F; electron 99.7 9E-17 3.1E-21 134.7 13.5 97 442-540 25-123 (124)
160 3emx_A Thioredoxin; structural 99.7 2.6E-17 8.8E-22 140.2 9.8 95 441-540 22-125 (135)
161 3qou_A Protein YBBN; thioredox 99.7 6.8E-17 2.3E-21 156.6 13.8 99 442-540 14-113 (287)
162 1x5e_A Thioredoxin domain cont 99.7 7.5E-17 2.6E-21 135.6 10.7 95 442-540 14-109 (126)
163 2l57_A Uncharacterized protein 99.7 1.3E-16 4.5E-21 134.1 11.8 91 450-540 23-116 (126)
164 3fk8_A Disulphide isomerase; A 99.7 8E-17 2.7E-21 136.9 9.9 92 448-539 24-131 (133)
165 2dj0_A Thioredoxin-related tra 99.7 2E-17 6.9E-22 141.4 5.6 96 442-537 14-117 (137)
166 1zma_A Bacterocin transport ac 99.7 6.4E-17 2.2E-21 134.4 8.0 95 441-538 18-118 (118)
167 3apq_A DNAJ homolog subfamily 99.7 2E-16 6.7E-21 145.7 11.7 99 441-540 103-201 (210)
168 3iv4_A Putative oxidoreductase 99.7 3.7E-16 1.3E-20 124.5 11.4 99 436-537 8-112 (112)
169 2es7_A Q8ZP25_salty, putative 99.7 3.3E-17 1.1E-21 140.1 5.7 95 443-539 25-123 (142)
170 1mek_A Protein disulfide isome 99.7 1E-16 3.5E-21 133.4 8.3 98 442-540 14-116 (120)
171 2gqf_A Hypothetical protein HI 99.7 1.7E-16 5.8E-21 160.7 11.4 116 94-210 4-169 (401)
172 2dbc_A PDCL2, unnamed protein 99.6 3.9E-16 1.3E-20 132.8 10.0 95 441-539 16-119 (135)
173 2yj7_A LPBCA thioredoxin; oxid 99.5 1.1E-17 3.7E-22 135.9 0.0 99 442-540 8-106 (106)
174 1fo5_A Thioredoxin; disulfide 99.6 4E-16 1.4E-20 121.1 8.9 83 454-540 3-85 (85)
175 3dml_A Putative uncharacterize 99.6 1.6E-16 5.4E-21 128.7 6.4 87 453-539 18-108 (116)
176 3ed3_A Protein disulfide-isome 99.6 1.5E-15 5.2E-20 147.1 14.0 100 441-540 23-141 (298)
177 2fwh_A Thiol:disulfide interch 99.6 4.7E-16 1.6E-20 132.2 9.0 100 439-539 16-126 (134)
178 1nho_A Probable thioredoxin; b 99.6 4E-16 1.4E-20 121.1 7.4 82 455-540 3-84 (85)
179 3ga4_A Dolichyl-diphosphooligo 99.6 5.3E-16 1.8E-20 136.0 8.8 99 441-539 24-151 (178)
180 2djj_A PDI, protein disulfide- 99.6 1.3E-16 4.5E-21 133.1 4.5 95 443-540 15-116 (121)
181 2dj3_A Protein disulfide-isome 99.6 5.1E-17 1.7E-21 138.1 1.9 96 445-540 17-117 (133)
182 1a8l_A Protein disulfide oxido 99.6 2.3E-15 7.8E-20 140.3 13.0 98 442-540 123-225 (226)
183 2cul_A Glucose-inhibited divis 99.6 2.6E-15 8.8E-20 140.4 12.7 111 94-211 3-127 (232)
184 1wou_A Thioredoxin -related pr 99.6 1.8E-15 6E-20 126.5 10.2 102 436-538 6-122 (123)
185 2trc_P Phosducin, MEKA, PP33; 99.6 9.4E-16 3.2E-20 140.9 8.9 99 439-539 104-211 (217)
186 1wmj_A Thioredoxin H-type; str 99.6 9.7E-17 3.3E-21 135.7 2.1 100 439-540 19-121 (130)
187 2kuc_A Putative disulphide-iso 99.6 2.3E-15 7.7E-20 127.2 9.2 90 450-539 24-119 (130)
188 3idv_A Protein disulfide-isome 99.6 4.4E-15 1.5E-19 139.8 12.1 97 441-539 21-120 (241)
189 1a0r_P Phosducin, MEKA, PP33; 99.6 3.2E-15 1.1E-19 139.0 10.8 99 439-539 117-224 (245)
190 2r2j_A Thioredoxin domain-cont 99.6 5.3E-15 1.8E-19 149.0 12.4 97 442-539 12-115 (382)
191 2ju5_A Thioredoxin disulfide i 99.6 9E-15 3.1E-19 127.4 11.2 94 446-540 40-151 (154)
192 3idv_A Protein disulfide-isome 99.6 1.2E-14 4E-19 136.9 11.8 97 442-540 137-236 (241)
193 3q6o_A Sulfhydryl oxidase 1; p 99.6 7.1E-15 2.4E-19 138.6 10.3 98 441-539 18-125 (244)
194 2lst_A Thioredoxin; structural 99.3 2.6E-16 9E-21 133.0 0.0 94 447-540 13-115 (130)
195 3f8u_A Protein disulfide-isome 99.6 1.3E-14 4.4E-19 151.2 12.3 98 442-540 8-108 (481)
196 3f9u_A Putative exported cytoc 99.6 3.9E-15 1.3E-19 132.4 6.8 94 446-539 40-164 (172)
197 2b5e_A Protein disulfide-isome 99.5 2.6E-14 8.7E-19 149.7 12.8 98 442-540 21-121 (504)
198 1sji_A Calsequestrin 2, calseq 99.5 4.3E-14 1.5E-18 140.7 13.2 97 441-540 17-121 (350)
199 3us3_A Calsequestrin-1; calciu 99.5 5.9E-14 2E-18 140.4 12.6 97 441-539 19-122 (367)
200 2djk_A PDI, protein disulfide- 99.5 2.4E-14 8.2E-19 121.3 8.1 97 441-540 12-114 (133)
201 1ilo_A Conserved hypothetical 99.5 5.5E-14 1.9E-18 106.7 9.2 74 456-536 2-76 (77)
202 2b5x_A YKUV protein, TRXY; thi 99.5 1.1E-13 3.8E-18 119.3 12.2 90 451-540 27-144 (148)
203 3ces_A MNMG, tRNA uridine 5-ca 99.5 8.4E-13 2.9E-17 138.6 20.4 156 94-271 28-221 (651)
204 2ywl_A Thioredoxin reductase r 99.5 2.4E-13 8.1E-18 121.8 14.1 112 94-211 1-112 (180)
205 2fgx_A Putative thioredoxin; N 99.5 4.7E-14 1.6E-18 112.7 8.1 78 455-537 30-107 (107)
206 2hls_A Protein disulfide oxido 99.5 1.6E-13 5.4E-18 128.9 13.1 90 446-539 131-224 (243)
207 1lu4_A Soluble secreted antige 99.5 1.7E-13 5.7E-18 116.4 11.8 87 452-540 23-135 (136)
208 3kp8_A Vkorc1/thioredoxin doma 99.5 2.1E-14 7.1E-19 116.1 5.6 77 450-537 9-91 (106)
209 1z6n_A Hypothetical protein PA 99.5 5.2E-14 1.8E-18 123.4 8.5 89 446-537 47-139 (167)
210 3ph9_A Anterior gradient prote 99.5 1.8E-14 6.3E-19 123.8 5.5 106 431-537 22-138 (151)
211 2ywm_A Glutaredoxin-like prote 99.5 9.9E-14 3.4E-18 129.4 10.9 94 442-539 125-218 (229)
212 1ttz_A Conserved hypothetical 99.5 5.5E-14 1.9E-18 108.5 7.5 74 457-540 3-76 (87)
213 3uem_A Protein disulfide-isome 99.5 6E-14 2E-18 140.4 9.6 97 441-539 255-355 (361)
214 1sen_A Thioredoxin-like protei 99.5 5.8E-15 2E-19 129.9 1.6 97 442-539 36-146 (164)
215 3t58_A Sulfhydryl oxidase 1; o 99.5 9.9E-14 3.4E-18 143.8 10.8 99 442-540 19-126 (519)
216 3erw_A Sporulation thiol-disul 99.5 3.6E-13 1.2E-17 115.7 11.7 86 452-537 33-145 (145)
217 1zzo_A RV1677; thioredoxin fol 99.5 4.6E-13 1.6E-17 113.5 12.1 87 452-540 24-134 (136)
218 3f8u_A Protein disulfide-isome 99.5 1.1E-13 3.8E-18 144.1 9.9 99 441-540 358-460 (481)
219 2f9s_A Thiol-disulfide oxidore 99.5 5.4E-13 1.9E-17 115.6 12.3 89 452-540 25-137 (151)
220 3apo_A DNAJ homolog subfamily 99.4 1.4E-13 4.6E-18 152.0 10.1 99 441-540 122-220 (780)
221 2c0g_A ERP29 homolog, windbeut 99.4 4.7E-13 1.6E-17 124.5 12.0 92 442-539 23-130 (248)
222 2zxi_A TRNA uridine 5-carboxym 99.4 3.4E-12 1.2E-16 133.5 19.4 156 94-271 27-220 (637)
223 3ira_A Conserved protein; meth 99.4 1.4E-13 4.7E-18 120.7 7.5 80 442-522 29-120 (173)
224 3or5_A Thiol:disulfide interch 99.4 7.7E-13 2.6E-17 116.4 12.2 89 452-540 33-150 (165)
225 2ywm_A Glutaredoxin-like prote 99.4 3.8E-13 1.3E-17 125.4 10.4 100 440-539 6-113 (229)
226 3raz_A Thioredoxin-related pro 99.4 7.8E-13 2.7E-17 114.6 11.3 88 452-539 23-138 (151)
227 1a8l_A Protein disulfide oxido 99.4 3.9E-13 1.3E-17 125.1 9.9 98 441-539 8-111 (226)
228 3cp8_A TRNA uridine 5-carboxym 99.4 1.5E-12 5.2E-17 136.6 15.3 158 93-271 20-215 (641)
229 2qc7_A ERP31, ERP28, endoplasm 99.4 1.1E-12 3.9E-17 121.6 11.9 94 441-539 11-117 (240)
230 4evm_A Thioredoxin family prot 99.4 1.5E-12 5.2E-17 110.4 11.7 88 452-539 21-137 (138)
231 3eyt_A Uncharacterized protein 99.4 1.6E-12 5.6E-17 113.5 11.9 89 452-540 27-151 (158)
232 3lor_A Thiol-disulfide isomera 99.4 1.9E-12 6.4E-17 113.3 12.1 89 452-540 29-154 (160)
233 2lja_A Putative thiol-disulfid 99.4 1.1E-12 3.9E-17 113.6 10.2 88 452-539 29-141 (152)
234 3gl3_A Putative thiol:disulfid 99.4 2.9E-12 1E-16 111.0 12.4 89 452-540 27-141 (152)
235 3ia1_A THIO-disulfide isomeras 99.4 1.4E-12 4.8E-17 113.4 10.3 85 454-540 31-143 (154)
236 2h30_A Thioredoxin, peptide me 99.4 4.9E-13 1.7E-17 117.6 7.3 90 451-540 36-155 (164)
237 3fkf_A Thiol-disulfide oxidore 99.4 2.8E-12 9.7E-17 110.4 11.2 86 452-540 32-145 (148)
238 3hcz_A Possible thiol-disulfid 99.4 1.1E-12 3.8E-17 113.0 8.7 88 452-539 30-144 (148)
239 2lrn_A Thiol:disulfide interch 99.4 2.7E-12 9.3E-17 111.3 10.8 85 452-539 28-139 (152)
240 3qcp_A QSOX from trypanosoma b 99.4 4.7E-14 1.6E-18 142.2 -0.6 82 445-526 33-125 (470)
241 2b5e_A Protein disulfide-isome 99.4 6E-13 2.1E-17 139.3 7.7 97 442-540 365-466 (504)
242 2l5o_A Putative thioredoxin; s 99.4 2E-12 6.8E-17 112.2 9.5 89 452-540 27-140 (153)
243 3apo_A DNAJ homolog subfamily 99.3 1.2E-12 4.3E-17 144.3 9.9 100 441-540 663-766 (780)
244 3ha9_A Uncharacterized thiored 99.3 6.1E-12 2.1E-16 110.7 11.8 86 452-540 36-163 (165)
245 3lwa_A Secreted thiol-disulfid 99.3 4E-12 1.4E-16 114.0 10.7 89 452-540 58-180 (183)
246 2b1k_A Thiol:disulfide interch 99.3 2.6E-12 9E-17 113.4 8.9 86 451-539 49-158 (168)
247 1kng_A Thiol:disulfide interch 99.3 3.6E-12 1.2E-16 111.0 9.1 87 452-540 41-151 (156)
248 3kcm_A Thioredoxin family prot 99.3 1.1E-11 3.7E-16 107.7 12.1 88 452-539 27-141 (154)
249 3hdc_A Thioredoxin family prot 99.3 2.2E-11 7.5E-16 106.3 12.4 87 452-538 40-149 (158)
250 3eur_A Uncharacterized protein 99.3 1.3E-11 4.6E-16 105.5 10.8 84 452-538 30-142 (142)
251 2lrt_A Uncharacterized protein 99.3 1.5E-11 5.2E-16 106.6 11.1 85 452-536 34-143 (152)
252 3kh7_A Thiol:disulfide interch 99.3 1.2E-11 4.1E-16 110.1 10.1 85 452-539 57-165 (176)
253 3v76_A Flavoprotein; structura 99.3 3.6E-11 1.2E-15 121.9 14.6 115 92-209 25-187 (417)
254 3ewl_A Uncharacterized conserv 99.3 1.1E-11 3.7E-16 106.1 8.9 85 452-539 26-139 (142)
255 3fw2_A Thiol-disulfide oxidore 99.3 3.6E-11 1.2E-15 103.9 11.6 85 452-539 32-146 (150)
256 2hls_A Protein disulfide oxido 99.2 1.9E-11 6.6E-16 114.6 10.2 101 436-539 8-115 (243)
257 2hyx_A Protein DIPZ; thioredox 99.2 2.7E-11 9.3E-16 119.1 11.5 89 452-540 81-198 (352)
258 2ywi_A Hypothetical conserved 99.2 2.1E-11 7.3E-16 110.5 9.2 89 451-539 44-172 (196)
259 1jfu_A Thiol:disulfide interch 99.2 7.3E-11 2.5E-15 106.0 12.2 88 452-539 59-178 (186)
260 2cvb_A Probable thiol-disulfid 99.2 3.7E-11 1.3E-15 108.2 10.1 88 452-539 32-157 (188)
261 4fo5_A Thioredoxin-like protei 99.2 4.5E-11 1.5E-15 102.4 10.1 85 452-539 31-143 (143)
262 1wjk_A C330018D20RIK protein; 99.2 2E-11 7E-16 97.3 7.4 79 453-540 15-95 (100)
263 3s9f_A Tryparedoxin; thioredox 99.2 4.1E-11 1.4E-15 105.4 9.9 72 452-523 47-146 (165)
264 1hyu_A AHPF, alkyl hydroperoxi 99.2 7.2E-11 2.5E-15 123.6 13.4 92 442-538 106-197 (521)
265 1i5g_A Tryparedoxin II; electr 99.2 5.7E-11 1.9E-15 101.8 9.6 72 452-523 27-126 (144)
266 2dlx_A UBX domain-containing p 99.2 6E-11 2E-15 101.9 9.6 94 445-539 34-134 (153)
267 1o8x_A Tryparedoxin, TRYX, TXN 99.2 6.5E-11 2.2E-15 101.8 9.7 72 452-523 27-126 (146)
268 1o73_A Tryparedoxin; electron 99.2 7.7E-11 2.6E-15 100.9 9.4 72 452-523 27-126 (144)
269 3kp9_A Vkorc1/thioredoxin doma 99.1 2.2E-11 7.5E-16 115.4 5.3 84 442-537 189-276 (291)
270 2rli_A SCO2 protein homolog, m 99.1 2.5E-10 8.7E-15 100.8 11.5 89 452-540 25-163 (171)
271 2k8s_A Thioredoxin; dimer, str 99.1 2.3E-11 7.8E-16 92.8 4.0 63 457-521 4-67 (80)
272 2k6v_A Putative cytochrome C o 99.1 1.5E-10 5.2E-15 102.4 9.8 89 452-540 34-172 (172)
273 2e7p_A Glutaredoxin; thioredox 99.1 2.2E-11 7.5E-16 100.2 3.8 83 449-539 16-106 (116)
274 2ggt_A SCO1 protein homolog, m 99.1 1.8E-10 6E-15 101.0 9.9 89 452-540 22-160 (164)
275 3u5r_E Uncharacterized protein 99.1 2.1E-10 7.3E-15 105.7 10.2 87 453-539 58-185 (218)
276 3k7m_X 6-hydroxy-L-nicotine ox 99.1 9.8E-12 3.4E-16 127.5 0.5 92 278-378 206-307 (431)
277 2ls5_A Uncharacterized protein 98.7 8.6E-12 2.9E-16 109.0 0.0 87 452-539 32-146 (159)
278 1rp0_A ARA6, thiazole biosynth 99.1 3E-10 1E-14 109.3 10.7 164 241-406 40-278 (284)
279 3uem_A Protein disulfide-isome 99.1 1.7E-10 5.9E-15 115.2 9.3 96 444-539 126-228 (361)
280 3drn_A Peroxiredoxin, bacterio 99.1 6.5E-10 2.2E-14 97.2 10.9 84 453-536 28-141 (161)
281 2lus_A Thioredoxion; CR-Trp16, 98.6 1.5E-11 5.1E-16 105.2 0.0 71 453-523 25-125 (143)
282 1rp0_A ARA6, thiazole biosynth 99.0 1.9E-09 6.4E-14 103.7 14.2 116 93-211 38-193 (284)
283 2bry_A NEDD9 interacting prote 99.0 6.1E-10 2.1E-14 115.8 11.4 122 92-216 90-237 (497)
284 2vup_A Glutathione peroxidase- 99.0 5.3E-10 1.8E-14 100.7 9.5 89 452-540 47-184 (190)
285 1ego_A Glutaredoxin; electron 99.0 3.2E-10 1.1E-14 87.4 6.7 75 456-539 2-82 (85)
286 3cmi_A Peroxiredoxin HYR1; thi 99.0 3.8E-10 1.3E-14 99.8 8.0 88 452-540 31-167 (171)
287 2v1m_A Glutathione peroxidase; 99.0 8.6E-10 2.9E-14 97.1 9.9 89 452-540 30-166 (169)
288 2p5q_A Glutathione peroxidase 99.0 1E-09 3.5E-14 96.8 10.1 89 452-540 31-167 (170)
289 3dwv_A Glutathione peroxidase- 99.0 6.2E-10 2.1E-14 100.0 8.7 89 452-540 45-182 (187)
290 2i0z_A NAD(FAD)-utilizing dehy 99.0 1.3E-09 4.4E-14 112.0 12.2 114 93-209 25-191 (447)
291 2p31_A CL683, glutathione pero 99.0 8.2E-10 2.8E-14 98.6 9.2 89 452-540 48-180 (181)
292 3nix_A Flavoprotein/dehydrogen 99.0 2.7E-09 9.4E-14 108.8 14.4 116 94-209 5-166 (421)
293 3oz2_A Digeranylgeranylglycero 99.0 1.9E-09 6.4E-14 108.8 12.9 116 94-209 4-162 (397)
294 3nlc_A Uncharacterized protein 99.0 2.7E-09 9.2E-14 111.3 14.2 118 93-210 106-278 (549)
295 2bmx_A Alkyl hydroperoxidase C 99.0 1.2E-09 4E-14 98.8 10.2 88 452-539 44-168 (195)
296 3cgv_A Geranylgeranyl reductas 99.0 1.8E-09 6E-14 109.2 12.6 116 94-209 4-162 (397)
297 1we0_A Alkyl hydroperoxide red 99.0 1E-09 3.5E-14 98.6 9.2 88 452-539 30-155 (187)
298 1zof_A Alkyl hydroperoxide-red 99.0 9E-10 3.1E-14 99.9 8.7 88 452-539 32-159 (198)
299 1ryi_A Glycine oxidase; flavop 99.0 2.2E-09 7.6E-14 107.9 12.3 119 91-209 14-219 (382)
300 1y0p_A Fumarate reductase flav 99.0 1.9E-09 6.5E-14 114.3 12.2 118 92-209 124-317 (571)
301 2obi_A PHGPX, GPX-4, phospholi 99.0 1.6E-09 5.5E-14 96.9 9.6 89 452-540 46-183 (183)
302 2x3n_A Probable FAD-dependent 99.0 2.4E-09 8.3E-14 108.4 11.9 116 94-209 6-166 (399)
303 2f8a_A Glutathione peroxidase 99.0 1.9E-09 6.4E-14 98.4 10.0 89 452-540 46-206 (208)
304 3fmw_A Oxygenase; mithramycin, 99.0 4.1E-09 1.4E-13 111.2 13.3 117 93-209 48-207 (570)
305 1xvw_A Hypothetical protein RV 98.9 3.5E-09 1.2E-13 92.3 10.7 87 453-539 36-158 (160)
306 3kij_A Probable glutathione pe 98.9 1.8E-09 6.2E-14 96.2 8.8 88 452-539 37-168 (180)
307 3qj4_A Renalase; FAD/NAD(P)-bi 98.9 1.7E-09 5.9E-14 107.0 9.0 111 94-207 1-163 (342)
308 3rp8_A Flavoprotein monooxygen 98.9 2.4E-09 8.3E-14 108.7 10.1 117 91-209 20-181 (407)
309 1y56_B Sarcosine oxidase; dehy 98.9 8.7E-09 3E-13 103.6 14.0 117 93-209 4-205 (382)
310 3dme_A Conserved exported prot 98.9 6E-09 2.1E-13 104.0 12.4 55 154-208 149-208 (369)
311 3gyk_A 27KDA outer membrane pr 98.9 4.1E-09 1.4E-13 93.4 9.5 82 452-539 21-171 (175)
312 1qo8_A Flavocytochrome C3 fuma 98.9 1.1E-08 3.6E-13 108.4 14.2 118 92-209 119-312 (566)
313 2gs3_A PHGPX, GPX-4, phospholi 98.9 3.9E-09 1.3E-13 94.5 9.3 89 452-540 48-185 (185)
314 3alj_A 2-methyl-3-hydroxypyrid 98.9 5.6E-09 1.9E-13 104.9 11.5 114 94-210 11-161 (379)
315 2oln_A NIKD protein; flavoprot 98.9 1.5E-08 5E-13 102.5 14.5 54 155-208 153-207 (397)
316 3ihg_A RDME; flavoenzyme, anth 98.9 1.4E-08 4.6E-13 107.0 14.4 117 93-209 4-183 (535)
317 3e1t_A Halogenase; flavoprotei 98.9 1.8E-08 6.1E-13 105.4 15.0 117 94-210 7-173 (512)
318 1d4d_A Flavocytochrome C fumar 98.9 2.8E-08 9.4E-13 105.2 16.1 118 93-210 125-318 (572)
319 1yvv_A Amine oxidase, flavin-c 98.9 2.6E-08 8.9E-13 98.1 15.0 110 94-208 2-161 (336)
320 2qa2_A CABE, polyketide oxygen 98.9 1.3E-08 4.3E-13 106.0 12.9 118 92-209 10-166 (499)
321 1eej_A Thiol:disulfide interch 98.9 4.7E-09 1.6E-13 96.4 8.5 80 453-539 86-209 (216)
322 2uzz_A N-methyl-L-tryptophan o 98.9 1.5E-08 5E-13 101.5 12.7 54 155-208 149-203 (372)
323 2qa1_A PGAE, polyketide oxygen 98.8 1.2E-08 4.1E-13 106.1 12.3 119 91-209 8-165 (500)
324 2gmh_A Electron transfer flavo 98.8 2.3E-08 7.7E-13 106.0 14.5 116 94-209 35-217 (584)
325 2gf3_A MSOX, monomeric sarcosi 98.8 2E-08 6.9E-13 101.1 13.4 54 155-208 150-204 (389)
326 3ps9_A TRNA 5-methylaminomethy 98.8 2.6E-08 8.8E-13 107.8 15.0 55 154-208 416-472 (676)
327 1uul_A Tryparedoxin peroxidase 98.8 8.3E-09 2.9E-13 93.8 9.5 88 452-539 35-163 (202)
328 1qmv_A Human thioredoxin perox 98.8 1.2E-08 4E-13 92.4 10.3 88 452-539 33-161 (197)
329 2jsy_A Probable thiol peroxida 98.8 2.2E-08 7.6E-13 87.9 11.6 87 452-539 43-165 (167)
330 3dje_A Fructosyl amine: oxygen 98.8 3.9E-08 1.3E-12 100.8 15.1 56 154-209 160-221 (438)
331 2vou_A 2,6-dihydroxypyridine h 98.8 2E-08 6.8E-13 101.5 12.6 114 94-209 5-153 (397)
332 3i3l_A Alkylhalidase CMLS; fla 98.8 2.5E-08 8.6E-13 105.4 13.8 116 94-209 23-188 (591)
333 3nyc_A D-arginine dehydrogenas 98.8 1.4E-08 4.7E-13 101.9 11.3 55 154-208 153-208 (381)
334 2xdo_A TETX2 protein; tetracyc 98.8 2E-08 6.7E-13 101.6 12.4 115 94-210 26-183 (398)
335 3atr_A Conserved archaeal prot 98.8 1.8E-08 6.2E-13 103.7 12.1 117 94-210 6-163 (453)
336 1xzo_A BSSCO, hypothetical pro 98.8 2.2E-08 7.5E-13 88.4 11.0 89 452-540 32-171 (174)
337 1zye_A Thioredoxin-dependent p 98.8 1.4E-08 4.8E-13 93.5 10.0 87 453-539 56-183 (220)
338 2h01_A 2-Cys peroxiredoxin; th 98.8 1.4E-08 4.7E-13 91.5 9.8 88 452-539 30-157 (192)
339 2i81_A 2-Cys peroxiredoxin; st 98.8 1.7E-08 5.8E-13 92.4 10.3 88 452-539 51-178 (213)
340 1t3b_A Thiol:disulfide interch 98.8 6.8E-09 2.3E-13 94.9 7.5 80 453-539 86-209 (211)
341 3pl8_A Pyranose 2-oxidase; sub 98.8 4.9E-12 1.7E-16 134.8 -15.7 59 287-345 271-330 (623)
342 2gag_B Heterotetrameric sarcos 98.8 2.8E-08 9.7E-13 100.6 12.7 56 154-209 173-230 (405)
343 3pvc_A TRNA 5-methylaminomethy 98.8 5.1E-08 1.7E-12 105.6 14.9 55 154-208 411-468 (689)
344 1h75_A Glutaredoxin-like prote 98.8 7.9E-09 2.7E-13 78.6 5.9 71 457-539 3-76 (81)
345 1k0i_A P-hydroxybenzoate hydro 98.8 2.4E-08 8.3E-13 100.7 11.1 116 95-210 3-164 (394)
346 4at0_A 3-ketosteroid-delta4-5a 98.8 7.6E-08 2.6E-12 100.5 14.9 36 93-128 40-75 (510)
347 2b7k_A SCO1 protein; metalloch 98.8 1.6E-08 5.5E-13 91.7 8.5 88 452-539 40-177 (200)
348 1xvq_A Thiol peroxidase; thior 98.8 2E-08 6.8E-13 89.0 8.9 85 452-538 43-162 (175)
349 3c96_A Flavin-containing monoo 98.7 5.5E-08 1.9E-12 98.7 12.9 115 94-209 4-169 (410)
350 2yqu_A 2-oxoglutarate dehydrog 98.7 6.3E-08 2.2E-12 99.7 13.3 100 94-213 167-268 (455)
351 1v58_A Thiol:disulfide interch 98.7 4.1E-08 1.4E-12 91.6 10.6 84 453-539 97-231 (241)
352 1r7h_A NRDH-redoxin; thioredox 98.7 3.3E-08 1.1E-12 73.8 8.0 69 457-537 3-74 (75)
353 3ztl_A Thioredoxin peroxidase; 98.7 4.8E-08 1.6E-12 90.0 10.7 87 452-538 68-195 (222)
354 3jsk_A Cypbp37 protein; octame 98.7 5.8E-08 2E-12 94.3 11.4 117 93-209 78-251 (344)
355 1nhp_A NADH peroxidase; oxidor 98.7 5.1E-08 1.7E-12 100.1 11.3 103 93-214 148-251 (447)
356 2i3y_A Epididymal secretory gl 98.7 8E-08 2.7E-12 87.7 11.1 88 452-540 55-210 (215)
357 2v3a_A Rubredoxin reductase; a 98.7 1.1E-07 3.8E-12 95.6 13.2 99 94-211 145-245 (384)
358 3h93_A Thiol:disulfide interch 98.7 3E-08 1E-12 89.2 8.2 86 452-539 24-182 (192)
359 2qcu_A Aerobic glycerol-3-phos 98.7 1.6E-07 5.5E-12 97.8 14.6 115 94-208 3-209 (501)
360 3gkn_A Bacterioferritin comigr 98.7 5.7E-08 1.9E-12 84.8 9.4 87 453-539 35-160 (163)
361 2eq6_A Pyruvate dehydrogenase 98.7 1.2E-07 4E-12 97.8 13.1 100 94-213 169-275 (464)
362 2a4v_A Peroxiredoxin DOT5; yea 98.7 1.2E-07 4.1E-12 82.4 11.2 74 454-529 36-139 (159)
363 3c4n_A Uncharacterized protein 98.7 3.2E-08 1.1E-12 100.2 8.5 116 93-208 35-235 (405)
364 3ka7_A Oxidoreductase; structu 98.7 1.7E-07 5.7E-12 95.5 13.9 48 161-208 202-251 (425)
365 3da1_A Glycerol-3-phosphate de 98.6 2.5E-07 8.4E-12 97.6 14.5 36 93-128 17-52 (561)
366 1zk7_A HGII, reductase, mercur 98.6 1.6E-07 5.4E-12 97.0 12.8 99 93-212 175-274 (467)
367 4b1b_A TRXR, thioredoxin reduc 98.6 1.5E-07 5E-12 98.3 12.5 102 91-213 220-323 (542)
368 2gjc_A Thiazole biosynthetic e 98.6 1.9E-07 6.6E-12 90.2 12.4 88 93-183 64-176 (326)
369 3nrn_A Uncharacterized protein 98.6 7.5E-08 2.6E-12 98.1 10.0 45 163-208 197-242 (421)
370 1ebd_A E3BD, dihydrolipoamide 98.6 1.6E-07 5.3E-12 96.7 12.4 100 93-212 169-273 (455)
371 1kte_A Thioltransferase; redox 98.6 2E-08 6.8E-13 80.7 4.5 77 457-538 14-100 (105)
372 2aqj_A Tryptophan halogenase, 98.6 2E-07 6.8E-12 98.1 12.9 56 155-210 165-223 (538)
373 2hze_A Glutaredoxin-1; thiored 98.6 1.3E-08 4.6E-13 83.0 3.0 79 455-538 19-107 (114)
374 2r9z_A Glutathione amide reduc 98.6 2.5E-07 8.4E-12 95.4 13.1 99 94-212 166-267 (463)
375 3hd5_A Thiol:disulfide interch 98.6 7.3E-08 2.5E-12 86.9 8.0 43 452-494 24-66 (195)
376 1ges_A Glutathione reductase; 98.6 2.7E-07 9.1E-12 94.8 13.1 99 94-212 167-268 (450)
377 2e4g_A Tryptophan halogenase; 98.6 1.7E-07 5.8E-12 98.8 11.3 58 153-210 192-253 (550)
378 1v59_A Dihydrolipoamide dehydr 98.6 2.2E-07 7.4E-12 96.3 11.9 99 94-212 183-290 (478)
379 3kkj_A Amine oxidase, flavin-c 98.6 3.7E-08 1.3E-12 93.8 5.7 40 95-137 3-42 (336)
380 2r0c_A REBC; flavin adenine di 98.6 2.9E-07 9.8E-12 97.0 12.9 113 94-209 26-196 (549)
381 3oc4_A Oxidoreductase, pyridin 98.6 4.8E-07 1.6E-11 92.9 14.3 103 93-214 146-249 (452)
382 2r37_A Glutathione peroxidase 98.6 2.7E-07 9.2E-12 83.8 11.0 88 452-540 37-192 (207)
383 3urh_A Dihydrolipoyl dehydroge 98.6 3.1E-07 1.1E-11 95.4 12.8 101 93-213 197-304 (491)
384 1zmd_A Dihydrolipoyl dehydroge 98.6 3.5E-07 1.2E-11 94.6 13.0 100 94-212 178-285 (474)
385 2cq9_A GLRX2 protein, glutared 98.6 7E-08 2.4E-12 80.7 6.1 86 442-538 17-112 (130)
386 3cgb_A Pyridine nucleotide-dis 98.6 2.1E-07 7.3E-12 96.3 11.1 100 93-212 185-285 (480)
387 2a8x_A Dihydrolipoyl dehydroge 98.6 4.9E-07 1.7E-11 93.3 13.6 100 94-213 171-275 (464)
388 2bc0_A NADH oxidase; flavoprot 98.6 3E-07 1E-11 95.5 12.0 101 93-212 193-294 (490)
389 1lvl_A Dihydrolipoamide dehydr 98.6 1.6E-07 5.6E-12 96.6 9.9 99 93-213 170-272 (458)
390 2cdu_A NADPH oxidase; flavoenz 98.5 4.1E-07 1.4E-11 93.5 12.5 101 93-212 148-250 (452)
391 2weu_A Tryptophan 5-halogenase 98.5 4.1E-07 1.4E-11 95.1 12.5 58 153-210 171-231 (511)
392 2c0d_A Thioredoxin peroxidase 98.5 3.3E-07 1.1E-11 84.2 10.3 88 452-539 55-182 (221)
393 3ef6_A Toluene 1,2-dioxygenase 98.5 3.2E-07 1.1E-11 93.0 11.3 100 93-211 142-243 (410)
394 1pj5_A N,N-dimethylglycine oxi 98.5 5.1E-07 1.8E-11 99.9 13.8 56 153-208 149-206 (830)
395 2hqm_A GR, grase, glutathione 98.5 6.2E-07 2.1E-11 92.8 13.5 99 93-211 184-287 (479)
396 3lxd_A FAD-dependent pyridine 98.5 7.2E-07 2.5E-11 90.6 13.7 99 94-211 152-253 (415)
397 2gqw_A Ferredoxin reductase; f 98.5 4.1E-07 1.4E-11 92.1 11.8 96 94-211 145-241 (408)
398 1onf_A GR, grase, glutathione 98.5 6.6E-07 2.3E-11 93.1 13.6 99 94-212 176-278 (500)
399 3a2v_A Probable peroxiredoxin; 98.5 1.4E-07 4.8E-12 87.8 7.5 87 453-539 33-160 (249)
400 2dkh_A 3-hydroxybenzoate hydro 98.5 5.3E-07 1.8E-11 96.7 13.1 117 93-209 31-211 (639)
401 1xdi_A RV3303C-LPDA; reductase 98.5 6.6E-07 2.3E-11 93.2 13.4 100 93-212 181-282 (499)
402 2ht9_A Glutaredoxin-2; thiored 98.5 9E-08 3.1E-12 81.5 5.5 86 442-538 39-134 (146)
403 3ixr_A Bacterioferritin comigr 98.5 4.7E-07 1.6E-11 80.3 10.5 87 452-538 50-175 (179)
404 2pyx_A Tryptophan halogenase; 98.5 2.9E-07 1E-11 96.4 10.6 58 153-210 173-234 (526)
405 3c1r_A Glutaredoxin-1; oxidize 98.5 2.3E-07 8E-12 76.0 7.8 79 435-521 8-94 (118)
406 2qae_A Lipoamide, dihydrolipoy 98.5 7.8E-07 2.7E-11 91.8 13.4 100 93-212 173-279 (468)
407 2yzh_A Probable thiol peroxida 98.5 3.6E-07 1.2E-11 80.4 9.3 87 452-540 46-171 (171)
408 1xhc_A NADH oxidase /nitrite r 98.5 2.3E-07 7.9E-12 92.5 8.8 93 94-211 143-236 (367)
409 1ojt_A Surface protein; redox- 98.5 2.7E-07 9.4E-12 95.6 9.5 99 94-212 185-289 (482)
410 1psq_A Probable thiol peroxida 98.5 6.8E-07 2.3E-11 77.9 10.5 86 452-538 41-162 (163)
411 2lqo_A Putative glutaredoxin R 98.5 3.5E-07 1.2E-11 70.8 7.5 73 456-539 5-82 (92)
412 3ic9_A Dihydrolipoamide dehydr 98.5 7.6E-07 2.6E-11 92.4 12.6 100 93-213 173-278 (492)
413 1q1r_A Putidaredoxin reductase 98.5 9.4E-07 3.2E-11 90.1 13.0 100 93-211 148-252 (431)
414 3fg2_P Putative rubredoxin red 98.5 9.6E-07 3.3E-11 89.3 13.0 99 94-211 142-243 (404)
415 2bry_A NEDD9 interacting prote 98.5 2.1E-08 7E-13 104.3 0.6 146 197-342 37-233 (497)
416 1n8j_A AHPC, alkyl hydroperoxi 98.5 6.2E-07 2.1E-11 80.1 10.1 88 452-539 29-154 (186)
417 1dxl_A Dihydrolipoamide dehydr 98.5 5.3E-07 1.8E-11 93.2 11.1 100 93-212 176-282 (470)
418 1fec_A Trypanothione reductase 98.5 8.8E-07 3E-11 91.9 12.4 100 93-212 186-291 (490)
419 2wpf_A Trypanothione reductase 98.5 1.1E-06 3.8E-11 91.2 13.1 100 93-212 190-295 (495)
420 1mo9_A ORF3; nucleotide bindin 98.5 1.2E-06 4E-11 91.8 13.3 98 95-212 215-319 (523)
421 2h88_A Succinate dehydrogenase 98.5 1.2E-06 4.1E-11 92.9 13.4 117 93-209 17-217 (621)
422 2pn8_A Peroxiredoxin-4; thiore 98.4 7.6E-07 2.6E-11 81.2 10.3 88 452-539 47-175 (211)
423 3me7_A Putative uncharacterize 98.4 7E-07 2.4E-11 78.4 9.7 87 453-539 28-160 (170)
424 4g2e_A Peroxiredoxin; redox pr 98.4 1.7E-07 5.9E-12 81.2 5.6 88 452-539 29-156 (157)
425 3iwa_A FAD-dependent pyridine 98.4 1.2E-06 4E-11 90.6 12.8 99 94-211 159-260 (472)
426 1pn0_A Phenol 2-monooxygenase; 98.4 1.3E-06 4.6E-11 93.8 13.6 35 94-128 8-47 (665)
427 3gv1_A Disulfide interchange p 98.4 3.6E-07 1.2E-11 77.8 7.3 79 452-539 13-137 (147)
428 1kf6_A Fumarate reductase flav 98.4 8.9E-07 3E-11 93.9 11.8 116 94-209 5-197 (602)
429 3lad_A Dihydrolipoamide dehydr 98.4 1.9E-06 6.5E-11 89.1 14.0 100 93-212 179-283 (476)
430 3ntd_A FAD-dependent pyridine 98.4 1.4E-06 4.7E-11 92.3 13.2 98 94-211 151-269 (565)
431 3o0h_A Glutathione reductase; 98.4 1.7E-06 5.8E-11 89.6 13.6 101 93-213 190-292 (484)
432 1q98_A Thiol peroxidase, TPX; 98.4 8.4E-07 2.9E-11 77.5 9.6 85 452-537 42-162 (165)
433 3dk9_A Grase, GR, glutathione 98.4 1.9E-06 6.4E-11 89.2 13.6 100 93-212 186-296 (478)
434 2wdq_A Succinate dehydrogenase 98.4 1.8E-06 6.2E-11 91.3 13.5 116 94-209 7-206 (588)
435 3c4a_A Probable tryptophan hyd 98.4 9.7E-08 3.3E-12 95.9 3.3 106 95-210 1-144 (381)
436 3ic4_A Glutaredoxin (GRX-1); s 98.4 5.4E-07 1.8E-11 70.2 6.9 69 457-537 14-91 (92)
437 3ics_A Coenzyme A-disulfide re 98.4 9.4E-07 3.2E-11 94.0 11.0 98 93-211 186-284 (588)
438 3qmx_A Glutaredoxin A, glutare 98.4 1.5E-06 5E-11 68.6 9.1 61 453-521 14-79 (99)
439 1chu_A Protein (L-aspartate ox 98.4 9.6E-07 3.3E-11 92.5 10.3 35 93-128 7-41 (540)
440 4f9z_D Endoplasmic reticulum r 98.4 3.6E-06 1.2E-10 77.6 13.1 99 442-540 120-224 (227)
441 1m6i_A Programmed cell death p 98.4 2E-06 6.8E-11 89.2 12.4 100 94-212 180-285 (493)
442 4eqs_A Coenzyme A disulfide re 98.4 9E-07 3.1E-11 90.4 9.6 96 94-212 147-243 (437)
443 2bs2_A Quinol-fumarate reducta 98.4 2.6E-06 8.9E-11 91.0 13.5 51 352-403 371-429 (660)
444 3p7x_A Probable thiol peroxida 98.4 1E-06 3.5E-11 77.0 8.4 85 452-538 45-165 (166)
445 1nm3_A Protein HI0572; hybrid, 98.3 2.1E-06 7.1E-11 80.1 10.9 87 452-538 32-164 (241)
446 3qpm_A Peroxiredoxin; oxidored 98.3 2.1E-06 7.1E-11 79.9 10.8 87 452-538 76-203 (240)
447 2rgh_A Alpha-glycerophosphate 98.3 4.2E-06 1.4E-10 88.3 14.4 35 94-128 32-66 (571)
448 3axb_A Putative oxidoreductase 98.3 1.4E-06 4.8E-11 89.3 10.6 32 94-125 23-55 (448)
449 3kd9_A Coenzyme A disulfide re 98.3 2.1E-06 7.1E-11 88.1 11.8 99 93-211 147-246 (449)
450 4hb9_A Similarities with proba 98.3 1.7E-06 5.8E-11 87.4 11.0 34 95-128 2-35 (412)
451 4gqc_A Thiol peroxidase, perox 98.3 2.3E-07 7.8E-12 81.0 3.9 89 451-539 31-158 (164)
452 3uma_A Hypothetical peroxiredo 98.3 1.4E-06 4.9E-11 77.3 9.0 86 453-538 57-183 (184)
453 4dna_A Probable glutathione re 98.3 2.7E-06 9.3E-11 87.6 12.4 100 93-213 169-272 (463)
454 1z6m_A Conserved hypothetical 98.3 3E-06 1E-10 74.8 10.4 81 453-538 27-175 (175)
455 2klx_A Glutaredoxin; thioredox 98.3 9E-07 3.1E-11 68.4 6.0 57 456-520 7-66 (89)
456 2znm_A Thiol:disulfide interch 98.3 1.6E-06 5.3E-11 78.1 8.5 41 453-493 22-62 (195)
457 2yan_A Glutaredoxin-3; oxidore 98.3 2E-06 6.9E-11 68.7 8.0 67 444-521 9-84 (105)
458 3g5s_A Methylenetetrahydrofola 98.3 9E-07 3.1E-11 86.5 6.9 46 360-407 321-366 (443)
459 3zrd_A Thiol peroxidase; oxido 98.3 2.7E-06 9.2E-11 76.8 9.6 86 452-538 77-198 (200)
460 3hz8_A Thiol:disulfide interch 98.3 2.1E-06 7.2E-11 77.0 8.8 43 452-494 23-65 (193)
461 2l4c_A Endoplasmic reticulum r 98.3 1.1E-05 3.6E-10 66.4 12.1 92 439-539 26-122 (124)
462 1tp9_A Peroxiredoxin, PRX D (t 98.3 3E-06 1E-10 73.7 9.4 75 452-526 34-146 (162)
463 1trb_A Thioredoxin reductase; 98.3 3.8E-06 1.3E-10 81.8 11.1 98 93-212 144-250 (320)
464 4dgk_A Phytoene dehydrogenase; 98.3 4.8E-07 1.6E-11 94.3 4.8 42 94-138 1-42 (501)
465 3tjj_A Peroxiredoxin-4; thiore 98.2 3.2E-06 1.1E-10 79.1 9.6 87 452-538 90-217 (254)
466 2cul_A Glucose-inhibited divis 98.2 3.6E-06 1.2E-10 78.0 9.8 153 241-402 4-231 (232)
467 2wfc_A Peroxiredoxin 5, PRDX5; 98.2 4.9E-06 1.7E-10 72.7 10.0 75 452-526 30-142 (167)
468 4dvc_A Thiol:disulfide interch 98.2 3.2E-06 1.1E-10 75.1 8.9 86 453-540 21-181 (184)
469 2e1m_A L-glutamate oxidase; L- 98.2 8.4E-07 2.9E-11 87.9 5.1 45 91-138 41-86 (376)
470 3dgh_A TRXR-1, thioredoxin red 98.2 1.1E-05 3.6E-10 83.6 13.5 99 93-212 186-292 (483)
471 3d1c_A Flavin-containing putat 98.2 5.9E-06 2E-10 82.2 11.1 105 94-211 166-274 (369)
472 4gde_A UDP-galactopyranose mut 98.2 8.3E-07 2.8E-11 92.7 4.9 42 93-137 9-51 (513)
473 1fov_A Glutaredoxin 3, GRX3; a 98.2 3.5E-06 1.2E-10 63.8 7.2 68 457-538 3-74 (82)
474 3h8l_A NADH oxidase; membrane 98.2 4.7E-06 1.6E-10 84.3 10.3 98 241-344 2-118 (409)
475 3dgz_A Thioredoxin reductase 2 98.2 1.2E-05 4.1E-10 83.3 13.6 99 93-212 184-290 (488)
476 2zbw_A Thioredoxin reductase; 98.2 5.5E-06 1.9E-10 81.3 10.4 97 93-211 151-254 (335)
477 3gyx_A Adenylylsulfate reducta 98.2 3.8E-06 1.3E-10 89.7 9.8 45 360-405 446-491 (662)
478 2ec4_A FAS-associated factor 1 98.2 9.2E-06 3.1E-10 71.2 10.5 90 450-539 52-166 (178)
479 3qfa_A Thioredoxin reductase 1 98.2 1.7E-05 5.9E-10 82.7 14.3 100 93-213 209-319 (519)
480 2khp_A Glutaredoxin; thioredox 98.2 5.8E-06 2E-10 64.2 8.1 57 456-520 7-67 (92)
481 3s5w_A L-ornithine 5-monooxyge 98.2 6E-06 2.1E-10 85.0 10.6 116 93-210 226-378 (463)
482 2rem_A Disulfide oxidoreductas 98.2 1.1E-05 3.8E-10 72.2 11.0 41 453-493 25-65 (193)
483 2pwj_A Mitochondrial peroxired 98.2 2.9E-06 9.8E-11 74.5 6.7 75 451-526 42-154 (171)
484 4hde_A SCO1/SENC family lipopr 98.1 8.7E-06 3E-10 71.4 9.7 88 452-539 31-168 (170)
485 3nzn_A Glutaredoxin; structura 98.1 4.4E-06 1.5E-10 66.5 7.1 72 455-537 22-102 (103)
486 3rhb_A ATGRXC5, glutaredoxin-C 98.1 6.2E-06 2.1E-10 66.9 8.1 57 457-521 21-85 (113)
487 3ab1_A Ferredoxin--NADP reduct 98.1 8.7E-06 3E-10 80.8 10.7 97 93-211 162-265 (360)
488 3itj_A Thioredoxin reductase 1 98.1 5.1E-06 1.7E-10 81.5 8.8 100 239-343 21-146 (338)
489 3msz_A Glutaredoxin 1; alpha-b 98.1 6.4E-06 2.2E-10 63.4 7.2 73 455-539 4-85 (89)
490 3lzw_A Ferredoxin--NADP reduct 98.1 2.3E-05 7.7E-10 76.6 13.0 95 241-342 8-129 (332)
491 1jnr_A Adenylylsulfate reducta 98.1 2.1E-05 7.2E-10 84.2 13.7 36 93-128 21-60 (643)
492 1s3e_A Amine oxidase [flavin-c 98.1 2.7E-06 9.2E-11 89.0 6.5 42 94-138 4-45 (520)
493 3l8k_A Dihydrolipoyl dehydroge 98.1 1.3E-05 4.4E-10 82.6 11.4 98 93-212 171-275 (466)
494 4a9w_A Monooxygenase; baeyer-v 98.1 1.2E-05 4.2E-10 79.3 10.8 90 241-338 4-131 (357)
495 3l9v_A Putative thiol-disulfid 98.1 2.5E-06 8.6E-11 76.2 5.0 41 454-494 15-58 (189)
496 3mng_A Peroxiredoxin-5, mitoch 98.1 1.2E-05 4.2E-10 70.4 9.3 86 453-538 43-172 (173)
497 2bcg_G Secretory pathway GDP d 98.1 3.5E-06 1.2E-10 86.5 6.1 43 93-138 10-52 (453)
498 3hyw_A Sulfide-quinone reducta 98.1 4.3E-06 1.5E-10 85.2 6.7 91 240-340 2-110 (430)
499 3klj_A NAD(FAD)-dependent dehy 98.0 5.3E-06 1.8E-10 83.1 7.0 96 239-343 8-120 (385)
500 4g6h_A Rotenone-insensitive NA 98.0 9E-06 3.1E-10 84.3 8.9 96 95-210 218-333 (502)
No 1
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=100.00 E-value=1.3e-45 Score=364.60 Aligned_cols=310 Identities=52% Similarity=0.923 Sum_probs=270.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-CCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
+++|||+||||||||++||.+|+++|++|+|||+...++ .++|.+......+++|+++....+.++..++...++++++
T Consensus 2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~ 81 (314)
T 4a5l_A 2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGT 81 (314)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCc
Confidence 356999999999999999999999999999999976543 3566766666778889999888999999999999999999
Q ss_pred EEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 171 ELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++...++.......+.+.+.. ++..+.||+||||||+.|+.|++||.+.++...+..+..+........+++++|||+|
T Consensus 82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG 161 (314)
T 4a5l_A 82 TIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGG 161 (314)
T ss_dssp EEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSS
T ss_pred EEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCC
Confidence 999988888888777776655 6678999999999999999999999988777777777776666666789999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
++|+|+|..|+++|.+|++++|.+..........+.....++..+....+.++.... ....++.+.+...++++++++|
T Consensus 162 ~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~d 240 (314)
T 4a5l_A 162 DAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDG-DLLNGAKIHNLVSGEYKVVPVA 240 (314)
T ss_dssp HHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECS
T ss_pred hHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEeee-eccceeEEeecccccceeeccc
Confidence 999999999999999999999988877777777777788899999999998887764 3456778887777888999999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|++++|++||+++++..+.++++|++ +|+++ +|+.|||||+|||++.+.+++..|+.+|+.||.++.+||+.
T Consensus 241 ~vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~~~-~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 241 GLFYAIGHSPNSKFLGGQVKTADDGYI-LTEGP-KTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp EEEECSCEEESCGGGTTSSCBCTTSCB-CCBTT-BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEecccccChhHhcccceEcCCeeE-eCCCC-ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999888888888876 78777 99999999999999987788999999999999999999963
No 2
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=100.00 E-value=9.5e-44 Score=354.91 Aligned_cols=314 Identities=49% Similarity=0.876 Sum_probs=271.2
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-CCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
...++||+|||||+||+++|..|++.|++|+|||+.+. ...+||.+.......++|+++......++..++.+.+++++
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 98 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG 98 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999999541 11288888887777778888887888999999999999999
Q ss_pred CEEEEeeEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEE
Q 009224 170 AELHQEDVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAV 245 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~V 245 (540)
++++.++|+.++.+++.|.+.. ++..+.||+||+|||+.|+.|.+||.+.++...++.+...+.......+++++|
T Consensus 99 v~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 178 (338)
T 3itj_A 99 TEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAV 178 (338)
T ss_dssp CEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred CEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEE
Confidence 9999999999999999998876 557799999999999999999999988777777776655555433567899999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEE
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESV 325 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~ 325 (540)
||+|.+|+|+|..|.+.|.+|+++++.+.+.....+.+++.+..||++++++.+.++..+. +++.++.+.+..++++.+
T Consensus 179 vG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~ 257 (338)
T 3itj_A 179 IGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDG-KLLNALRIKNTKKNEETD 257 (338)
T ss_dssp ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTTEEEE
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEccc-CcEEEEEEEECCCCceEE
Confidence 9999999999999999999999999999887777777776666799999999999998875 456778888766677788
Q ss_pred EEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 326 LEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 326 i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+++|.||+|+|++|+..++..+++++++|++.+++..++|+.|||||+|||++.+++.+..|+.+|+.||.+|.++|.++
T Consensus 258 i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 337 (338)
T 3itj_A 258 LPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL 337 (338)
T ss_dssp EECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHhcC
Confidence 99999999999999999988788899999999755444999999999999998666899999999999999999999865
No 3
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.1e-42 Score=345.33 Aligned_cols=306 Identities=42% Similarity=0.737 Sum_probs=256.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||+++|..|++.|++|+|||+. . +||.+........+|+++......++.+++.+.++++++++
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~ 82 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-M---PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKV 82 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C---TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-C---CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 4589999999999999999999999999999997 3 78887766666667777666778889999999999999999
Q ss_pred EEeeEEEEEee--CCc-EEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeC
Q 009224 173 HQEDVEFIDVK--SNP-FTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGG 248 (540)
Q Consensus 173 ~~~~v~~i~~~--~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~ 248 (540)
+.++|+.++.+ ++. +.+.. ++..+.||+||+|||+.|..|++||.+.+....++.+...+.. ...+++++|||+
T Consensus 83 ~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~ 160 (325)
T 2q7v_A 83 EMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGF--FYKGKKVVVIGG 160 (325)
T ss_dssp EECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG--GGTTCEEEEECC
T ss_pred EeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHH--HcCCCEEEEECC
Confidence 98999999887 443 55433 6678999999999999999999999876655555544333322 246799999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
|.+|+|+|..|.+.|.+|+++++.+.+.....+.++++++.||++++++++.++..+ +++.++.+.+..+|+..++++
T Consensus 161 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~~g~~~~i~~ 238 (325)
T 2q7v_A 161 GDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQGA--DSVSGVKLRNLKTGEVSELAT 238 (325)
T ss_dssp SHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEEC
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEccC--CcEEEEEEEECCCCcEEEEEc
Confidence 999999999999999999999999887666677777767789999999999999875 446677776544566678999
Q ss_pred cEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 329 KGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 329 D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
|.||+|+|++|+++++...++++++|++.||+++ +|+.|+|||+|||++.+++.+..|+.||+.||.+|.++|.++++
T Consensus 239 D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 316 (325)
T 2q7v_A 239 DGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEI-YTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLAALEV 316 (325)
T ss_dssp SEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTT-BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEccCCCCChHHHhhhcccCCCccEecCCCC-ccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999888655677889999999998 89999999999999865588999999999999999999988765
No 4
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=100.00 E-value=5.1e-43 Score=349.04 Aligned_cols=311 Identities=51% Similarity=0.899 Sum_probs=262.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcC----CCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEG----YQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~----~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.+||+|||||++|+++|..|++.|++|+|+|+ ... +||.+........+|+++......++..++.+.+++.+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIA---PGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFG 84 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC---TTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccC---CCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCC
Confidence 47999999999999999999999999999998 333 67777766666667777766677888999999999999
Q ss_pred CEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccc----ccCCCeeeeeecCCCCCCCCCCEEEE
Q 009224 170 AELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE----FWSRGISACAICDGASPLFKGQVLAV 245 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~----~~~~~~~~~~~~~~~~~~~~~k~v~V 245 (540)
++++.++|+.++.+++.|++..++..++||+||+|||++|..|++||.+. ++...++.+...+.......+++|+|
T Consensus 85 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 164 (333)
T 1vdc_A 85 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAV 164 (333)
T ss_dssp CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred CEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEE
Confidence 99999999999988888888777788999999999999999999998765 44455555444433322257899999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCC-ceeeEEEEEccCCceE
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKVDTGEES 324 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~~~g~~~ 324 (540)
||+|.+|+|+|..|.+.|.+|+++++.+.+.....+.++++++.||++++++++.++..++++ ++..+.+.+..+|+..
T Consensus 165 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~ 244 (333)
T 1vdc_A 165 IGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVS 244 (333)
T ss_dssp ECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEE
T ss_pred ECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceE
Confidence 999999999999999999999999999887666666667778899999999999999876532 5666777764456667
Q ss_pred EEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
++++|.||+|+|++|++.++..+++++++|++.+|+++++|+.|+|||+|||+..+++.+..|+.+|+.||.+|.++|.+
T Consensus 245 ~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 324 (333)
T 1vdc_A 245 DLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE 324 (333)
T ss_dssp EEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHHHh
Confidence 89999999999999999988767888889999999986689999999999999976688999999999999999999987
Q ss_pred Ccc
Q 009224 405 NNL 407 (540)
Q Consensus 405 ~~~ 407 (540)
+..
T Consensus 325 ~~~ 327 (333)
T 1vdc_A 325 IGS 327 (333)
T ss_dssp C--
T ss_pred ccc
Confidence 654
No 5
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.3e-43 Score=344.60 Aligned_cols=303 Identities=42% Similarity=0.689 Sum_probs=251.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..|||+||||||||++||.+|+++|++|+|||+.. +||.+......+++|+++ .....++.........+.+..+
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~----~gG~~~~~~~i~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI----PGGQMANTEEVENFPGFE-MITGPDLSTKMFEHAKKFGAVY 79 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTGGGGGCSCBCCSTTCS-SBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC----CCCeeecccccCCcCCcc-ccchHHHHHHHHHHHhhccccc
Confidence 35999999999999999999999999999999854 788887777667777664 3567788888888888888888
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
..+.............+..++.+++||+||||||++|+.|++||.+.+....+.++..++... .++|+++|||+|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~--~~~k~vvViGgG~ig 157 (312)
T 4gcm_A 80 QYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAF--FKNKRLFVIGGGDSA 157 (312)
T ss_dssp EECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGG--GTTCEEEEECCSHHH
T ss_pred cceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccc--cCCCEEEEECCCHHH
Confidence 877544444445555666688899999999999999999999999887777777665554432 568999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
+|+|..|++.|.+|++++|.+++++......+.+++.++.......+..+...+. ...........+++...+++|.|+
T Consensus 158 ~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v~ 236 (312)
T 4gcm_A 158 VEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDG-KVGSVTLTSTKDGSEETHEADGVF 236 (312)
T ss_dssp HHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETT-EEEEEEEEETTTCCEEEEECSEEE
T ss_pred HHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeecccc-ccccceeeeecCCceeEEeeeeEE
Confidence 9999999999999999999999888666666777888999988887777665432 223344445556778889999999
Q ss_pred EecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 333 YGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 333 ~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
+++|.+|+..++......+++|+|.||+++ +|++|||||+|||++.+++++..|+.+|+.||.+|.++|..
T Consensus 237 ~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~-~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 237 IYIGMKPLTAPFKDLGITNDVGYIVTKDDM-TTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp ECSCEEESCGGGGGGTCBCTTSCBCCCTTS-BCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCchhHHhcceecCCCeEeeCCCC-ccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988765446778999999998 99999999999999866688999999999999999999875
No 6
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=100.00 E-value=5.8e-43 Score=345.67 Aligned_cols=302 Identities=35% Similarity=0.626 Sum_probs=262.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEE-EcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVV-FEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~l-ie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++||+|||||+||++||..|++.|++|+| +|+ +. +||.+.......++|+++......++..++.+.+++++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 78 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GM---PGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLK 78 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SS---TTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CC---CCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcE
Confidence 468999999999999999999999999999 999 44 7888887777777888877788899999999999999999
Q ss_pred EEEeeEEEEEeeC--CcEE--EEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEe
Q 009224 172 LHQEDVEFIDVKS--NPFT--VKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVG 247 (540)
Q Consensus 172 ~~~~~v~~i~~~~--~~~~--v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG 247 (540)
++.++|+.+ .++ +.|. +..++ .+.||+||+|||+.|+.|.+||.+.+....++.+...... ...+++++|||
T Consensus 79 ~~~~~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG 154 (315)
T 3r9u_A 79 HEMVGVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGF--FYKNKEVAVLG 154 (315)
T ss_dssp EECCCEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG--GGTTSEEEEEC
T ss_pred EEEEEEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeeccccc--ccCcCEEEEEC
Confidence 999999999 777 7888 54455 8999999999999999999999887766666665544332 24689999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEE
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE 327 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~ 327 (540)
+|.+|+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++.+.++..++ +++.++.+. ..+|+..+++
T Consensus 155 ~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~-~~~g~~~~~~ 232 (315)
T 3r9u_A 155 GGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDK-MGVAGVKVK-LKDGSIRDLN 232 (315)
T ss_dssp CBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEEEEEEEET-TEEEEEEEE-CTTSCEEEEC
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCC-CcEEEEEEE-cCCCCeEEee
Confidence 99999999999999999999999999887777788888889999999999999998764 456667776 3456667899
Q ss_pred ccEEEEecccccCcccccc-----ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 328 AKGLFYGIGHSPNSQLLQG-----QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 328 ~D~vi~a~G~~p~~~~~~~-----~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
+|.||+|+|++|+..++.. +++++++|++.||+++ +|+.|||||+|||++.+++.+..|+.+|+.||.+|.++|
T Consensus 233 ~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~-~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 233 VPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKM-QTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp CSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTC-BCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCc-ccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHH
Confidence 9999999999999998876 4888999999999988 899999999999997556899999999999999999999
Q ss_pred hcC
Q 009224 403 VNN 405 (540)
Q Consensus 403 ~~~ 405 (540)
.++
T Consensus 312 ~~~ 314 (315)
T 3r9u_A 312 ESL 314 (315)
T ss_dssp HHC
T ss_pred Hhc
Confidence 865
No 7
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=100.00 E-value=6e-42 Score=337.91 Aligned_cols=303 Identities=34% Similarity=0.606 Sum_probs=254.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++||+|||||+||+++|..|++.|+ +|+|+|+.. +||.+........+|+++......++.+++.+.+++.++++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ 76 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM----PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKH 76 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS----TTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEE
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC----CCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 3799999999999999999999999 999999853 67777666555667777766788889999999999999999
Q ss_pred EEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 173 HQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
+..+|+.++.+++.|.+.. ++..+.||+||+|||+.|+.|++||.+.+....++.+...+.. ...+++|+|||+|.+
T Consensus 77 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~~ 154 (311)
T 2q0l_A 77 EMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDT 154 (311)
T ss_dssp ECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGG--GGTTSEEEEECCSHH
T ss_pred EEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChh--hcCCCEEEEECCCHH
Confidence 8889999998888777754 5668999999999999999999999876655555544333322 246899999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
|+|+|..|.+.|.+|+++++.+.+.....+.++++++.||++++++.+.++..++ +++..+.+.+..+|+..++++|.|
T Consensus 155 g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v 233 (311)
T 2q0l_A 155 AVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDA-SGVSSLSIKNTATNEKRELVVPGF 233 (311)
T ss_dssp HHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEE
T ss_pred HHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECCC-CcEeEEEEEecCCCceEEEecCEE
Confidence 9999999999999999999998876666667666667899999999999998763 345567776544566668999999
Q ss_pred EEecccccCccccccc-----eeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 332 FYGIGHSPNSQLLQGQ-----VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 332 i~a~G~~p~~~~~~~~-----~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
|+|+|++|+++++... ++++++|++.||+++ +|+.|+|||+|||++.+++.+..|+.||+.||.+|.++|.+
T Consensus 234 i~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 310 (311)
T 2q0l_A 234 FIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSM-KTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEH 310 (311)
T ss_dssp EECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTC-BCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCccChhhhhcccccceeEeccCCCEEeCCcc-ccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 9999999999887642 778889999999998 89999999999999865589999999999999999998865
No 8
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.7e-42 Score=345.42 Aligned_cols=308 Identities=50% Similarity=0.855 Sum_probs=258.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
...+||+|||||+||+++|..|++.|++|+|||+.. +||.+........+|+++......++.+++.+.+++++++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 87 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS----FGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGAD 87 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS----CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC----CCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 346899999999999999999999999999999753 6777766666666777776677888999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEE-EE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQEDVEFIDVKSNPFTV-KS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v-~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.++|+.++. .+.+++ .. ++..+.||+||+|||+.|..|++||.+.+....++.+...+.. ...+++|+|||+|
T Consensus 88 ~~~~~v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G 164 (335)
T 2a87_A 88 LRMEDVESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGG 164 (335)
T ss_dssp EECCCEEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGG--GGTTCEEEEECSS
T ss_pred EEEeeEEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchh--hcCCCEEEEECCC
Confidence 99999999987 566666 54 5568999999999999999999999776655555544333322 2468999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
.+|+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++++.++..++ ++.++.+.+..+|+..++++|
T Consensus 165 ~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D 242 (335)
T 2a87_A 165 DSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDT--TVTGLRVRDTNTGAETTLPVT 242 (335)
T ss_dssp HHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECSS--SCCEEEEEEETTSCCEEECCS
T ss_pred HHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecCC--cEeEEEEEEcCCCceEEeecC
Confidence 999999999999999999999998876655555566778999999999999998764 355677765445666789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
.||+|+|++|++.++..+++++++|++.||+++++|+.|+|||+|||++.+++.+..|+.+|+.||.+|.++|.++...
T Consensus 243 ~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l~~~~~~ 321 (335)
T 2a87_A 243 GVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEHAAT 321 (335)
T ss_dssp CEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHhhcCcCc
Confidence 9999999999999887678888899999999876899999999999998766889999999999999999999876643
No 9
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=100.00 E-value=9.4e-42 Score=337.90 Aligned_cols=305 Identities=46% Similarity=0.814 Sum_probs=254.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.+||+|||||+||+++|..|++.|++|+|+|+. . +||.+........+|+++......++.+++...+++.+++++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-E---KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII 80 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-S---TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-C---CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 479999999999999999999999999999975 3 777777666666777777777788899999999999999999
Q ss_pred EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHH
Q 009224 174 QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTAT 253 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~ 253 (540)
.++++.++.+++.|++..++..+.||+||+|||+.|..|++||.+.+....++.+...+.. ...+++++|||+|.+|+
T Consensus 81 ~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~g~ 158 (320)
T 1trb_A 81 FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAV 158 (320)
T ss_dssp CCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGG--GGTTSEEEEECSSHHHH
T ss_pred EeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCcc--ccCCCeEEEECCCHHHH
Confidence 9999999988888887446778999999999999999999998776555555554433332 25689999999999999
Q ss_pred HHHHHHHhcCCeEEEEEecccccccHH---HHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC-CceEEEEcc
Q 009224 254 EEAIYLTKFARHVHLLVRREQLRASRA---MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT-GEESVLEAK 329 (540)
Q Consensus 254 e~a~~l~~~g~~v~li~~~~~~~~~~~---~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~-g~~~~i~~D 329 (540)
|+|..|.+.|.+|+++++.+.+..... .+.+.+++.||++++++.+.++..++ +++.++.+.+..+ |+..++++|
T Consensus 159 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~g~~~~i~~D 237 (320)
T 1trb_A 159 EEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVA 237 (320)
T ss_dssp HHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECS
T ss_pred HHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCC-CceEEEEEEeccCCCceEEEEcC
Confidence 999999999999999999887655333 33344667899999999999998764 3566677765333 555789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCc----cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGT----AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~----~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.||+|+|++|++.++..+++++ +|++.+|+++ ++|+.|+|||+|||+..+++.+..|+.+|+.||.+|.++|.++
T Consensus 238 ~vv~a~G~~p~~~~~~~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 316 (320)
T 1trb_A 238 GLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGL 316 (320)
T ss_dssp EEEECSCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEEEEeCCCCChHHhccccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHHhc
Confidence 9999999999999887677888 8999999985 5899999999999999766889999999999999999999875
Q ss_pred c
Q 009224 406 N 406 (540)
Q Consensus 406 ~ 406 (540)
+
T Consensus 317 ~ 317 (320)
T 1trb_A 317 A 317 (320)
T ss_dssp -
T ss_pred c
Confidence 4
No 10
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=100.00 E-value=1.9e-41 Score=336.01 Aligned_cols=303 Identities=34% Similarity=0.614 Sum_probs=257.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
++||+|||||+||+++|..|++.|++|+|||+. +||.+........+|+++. ....++.+++.+.+++++++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-----~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 88 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET-----PGGQLTEAGIVDDYLGLIE-IQASDMIKVFNKHIEKYEVPVL 88 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----TTGGGGGCCEECCSTTSTT-EEHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc-----CCCeecccccccccCCCCC-CCHHHHHHHHHHHHHHcCCEEE
Confidence 589999999999999999999999999999986 5677776666666666654 5678899999999999999998
Q ss_pred EeeEEEEEeeCCcEEEEECC-eEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 174 QEDVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
..+|+.++.+++.+.+..+. ..+.||+||+|||+.|..|.+||.+.+....++.....+. ....+++++|||+|.+|
T Consensus 89 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~--~~~~~~~v~vvG~G~~~ 166 (323)
T 3f8d_A 89 LDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADA--PLFKNRVVAVIGGGDSA 166 (323)
T ss_dssp ESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHG--GGGTTCEEEEECCSHHH
T ss_pred EEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCH--hHcCCCEEEEECCCHHH
Confidence 89999999988888887744 7899999999999999999999988776666655444332 23568999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++.+.++..+ +++..+.+.+..+|+..++++|.||
T Consensus 167 ~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~D~vv 244 (323)
T 3f8d_A 167 LEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNVNGVF 244 (323)
T ss_dssp HHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECSEEE
T ss_pred HHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEcCEEE
Confidence 99999999999999999999988887777887777779999999999999876 3466688877556776789999999
Q ss_pred EecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC--cchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 333 YGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH--EWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 333 ~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~--~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
+++|++|+++++.. +++++++|++.+|+++ +|+.|||||+|||++. .++.+..|+.+|+.||.+|.+++.++..
T Consensus 245 ~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 321 (323)
T 3f8d_A 245 IEIGFDPPTDFAKSNGIETDTNGYIKVDEWM-RTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKKG 321 (323)
T ss_dssp ECCCEECCHHHHHHTTCCBCTTSSBCCCTTC-BCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEECCCCChhHHhhcCeeecCCCcEecCCCc-eecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHhhc
Confidence 99999999887754 6888999999999988 8999999999999985 2589999999999999999999987654
No 11
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=100.00 E-value=1.8e-41 Score=335.69 Aligned_cols=303 Identities=30% Similarity=0.576 Sum_probs=251.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||+++|..|++.|++|+|+|+. . +||.+........+|++ ......++.+++.+.+++.++++
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~---~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 89 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-V---AGGLTAEAPLVENYLGF-KSIVGSELAKLFADHAANYAKIR 89 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-S---TTGGGGGCSCBCCBTTB-SSBCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-C---CCccccccchhhhcCCC-cccCHHHHHHHHHHHHHHcCCEE
Confidence 4589999999999999999999999999999984 3 67776655544455555 34566788888888899999999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
+.++|+.++.+++.+.+..++..+.||+||+|||+.|+.|++||.+.+....++.....+.. ...+++++|||+|.+|
T Consensus 90 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~g 167 (319)
T 3cty_A 90 EGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY--LFKGKRVVTIGGGNSG 167 (319)
T ss_dssp ETCCEEEEEEETTEEEEEESSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG--GGBTSEEEEECCSHHH
T ss_pred EEeeEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchh--hcCCCeEEEECCCHHH
Confidence 88899999988888888777778999999999999999999998766544455443333221 2468999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
+|+|..|.+.+.+|+++++.+.+.....+.++ +++.||++++++++.++..++ +++.++.+.+..+|+..++++|.||
T Consensus 168 ~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~-l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi 245 (319)
T 3cty_A 168 AIAAISMSEYVKNVTIIEYMPKYMCENAYVQE-IKKRNIPYIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVF 245 (319)
T ss_dssp HHHHHHHTTTBSEEEEECSSSSCCSCHHHHHH-HHHTTCCEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEE
T ss_pred HHHHHHHHhhCCcEEEEEcCCccCCCHHHHHH-HhcCCcEEEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEE
Confidence 99999999999999999998877655555554 457899999999999998763 4466777765445666689999999
Q ss_pred EecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 333 YGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 333 ~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+|+|++|+++++.. +++++++|++.||+++ +|+.|+|||+|||++.+++.+..|+.+|+.||.+|.++|.++
T Consensus 246 ~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 318 (319)
T 3cty_A 246 IYVGLIPQTSFLKDSGVKLDERGYIVVDSRQ-RTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSISK 318 (319)
T ss_dssp ECCCEEECCGGGTTSCCCBCTTSCBCCCTTC-BCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EeeCCccChHHHhhccccccCCccEeCCCCC-ccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999988764 5788889999999997 899999999999998766889999999999999999999765
No 12
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=100.00 E-value=2.4e-40 Score=326.23 Aligned_cols=303 Identities=32% Similarity=0.594 Sum_probs=245.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
+||+|||||+||+++|..|++.|++|+|+|+. +||.+........++..+ .....++.+++.+.+++++++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~-----~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 75 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER-----FGGQILDTVDIENYISVP-KTEGQKLAGALKVHVDEYDVDVID 75 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS-----TTGGGGGCCEECCBTTBS-SEEHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-----CCceeccccccccccCcC-CCCHHHHHHHHHHHHHHcCCeEEc
Confidence 79999999999999999999999999999853 566665433333333322 234567888888889999999999
Q ss_pred e-eEEEEEeeC---CcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 175 E-DVEFIDVKS---NPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 175 ~-~v~~i~~~~---~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
+ +|+.++.+. +.+.+.. ++..+.||+||+|||+.|..|++||.+.+....++.+..... ....+++|+|||+|
T Consensus 76 ~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G 153 (310)
T 1fl2_A 76 SQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGG 153 (310)
T ss_dssp SCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHG--GGGBTCEEEEECCS
T ss_pred cCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcH--hhcCCCEEEEECCC
Confidence 8 899998763 3677766 456899999999999999888999987665555554433222 23468999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
.+|+|+|..|++.+.+|+++++.+.+.....+.+++.+..||++++++++.++..++ +++.++.+.+..+|+..++++|
T Consensus 154 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D 232 (310)
T 1fl2_A 154 NSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELA 232 (310)
T ss_dssp HHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECS
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcC
Confidence 999999999999999999999998875554455544333799999999999998753 4566788876555666789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.||+|+|++|+++++...++++++|++.||+++ +|+.|+|||+|||++.+.+.+..|+.+|+.||.+|.++|.++..
T Consensus 233 ~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 309 (310)
T 1fl2_A 233 GIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKT 309 (310)
T ss_dssp EEEECSCEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeeCCccCchHHhccccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHHHhcc
Confidence 999999999999888755778889999999998 79999999999999976678899999999999999999987653
No 13
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=100.00 E-value=5.1e-39 Score=337.79 Aligned_cols=303 Identities=32% Similarity=0.596 Sum_probs=251.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||++||..|++.|++|+|+|+. .||.+.......++++.+ .....++..++.+.++++|+++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~-----~GG~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~gv~v 284 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER-----FGGQVLDTVDIENYISVP-KTEGQKLAGALKAHVSDYDVDV 284 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-----TTGGGTTCSCBCCBTTBS-SBCHHHHHHHHHHHHHTSCEEE
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC-----CCCcccccccccccCCCC-CCCHHHHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999999999862 667766544344444433 2456788889999999999999
Q ss_pred EEe-eEEEEEeeC---CcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEe
Q 009224 173 HQE-DVEFIDVKS---NPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVG 247 (540)
Q Consensus 173 ~~~-~v~~i~~~~---~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG 247 (540)
+.+ +|+.++.+. +.+.+.. ++..++||+||+|||++|+.|++||.+.+....++++..++. ....+++|+|||
T Consensus 285 ~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~--~~~~~k~V~ViG 362 (521)
T 1hyu_A 285 IDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIG 362 (521)
T ss_dssp ECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCG--GGGBTSEEEEEC
T ss_pred EcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCch--hhcCCCeEEEEC
Confidence 998 999998653 3677765 556899999999999999999999988776666655443322 235789999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcC-CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEE
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNN-PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL 326 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i 326 (540)
+|++|+|+|..|++.+.+|+++.+.+.+.....+.++ +++ .||++++++.++++..++ +++.++.+.+..+|+..++
T Consensus 363 gG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~-l~~~~gV~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i 440 (521)
T 1hyu_A 363 GGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDK-VRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHSV 440 (521)
T ss_dssp CSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHH-HTTCTTEEEECSEEEEEEEECS-SSEEEEEEEETTTCCEEEE
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHH-HhcCCCcEEEeCCEEEEEEcCC-CcEEEEEEEeCCCCceEEE
Confidence 9999999999999999999999999887765544444 555 699999999999998753 4576788877556666789
Q ss_pred EccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 327 EAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 327 ~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
++|.|++++|++|++.++...++++++|+|.||+++ +|+.|||||+|||++.+++.+..|+.+|+.||.+|.++|.+++
T Consensus 441 ~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~-~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L~~~~ 519 (521)
T 1hyu_A 441 ALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKC-ETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTK 519 (521)
T ss_dssp ECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCC-CCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHHHhhh
Confidence 999999999999999888766788889999999998 8999999999999997678999999999999999999997754
No 14
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=100.00 E-value=6.2e-39 Score=319.20 Aligned_cols=303 Identities=21% Similarity=0.424 Sum_probs=250.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc---CccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT---TEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.++||+|||||+||+++|..|++.|++|+|||+.+. +||.+... .....+++++. ....++..++.+.+++++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQ---LGGQLSALYPEKYIYDVAGFPK-IRAQELINNLKEQMAKFD 81 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHHCTTSEECCSTTCSS-EEHHHHHHHHHHHHTTSC
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC---CCceehhcCCCceEeccCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999999999887 77777421 12233445432 356888999999999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEECCeEEEecEEEEccCC---CCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEE
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKSGERKVKCHSIVFATGA---TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLA 244 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~~~~~~~~d~lviAtG~---~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 244 (540)
++++.+ +|+.++..++ .|.+..+..++.||+||+|||+ .|..|.+||.+.+....++. ...+. ....+++++
T Consensus 82 ~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~--~~~~~~~v~ 158 (332)
T 3lzw_A 82 QTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDL--QKFAGRRVA 158 (332)
T ss_dssp CEEECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCG--GGGBTCEEE
T ss_pred CcEEccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCH--HHcCCCEEE
Confidence 999875 9999998877 7888876667999999999999 88889999988766555554 22221 224689999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|||+|.+|+|+|..|.+.+.+|+++.+.+.+........+ +++.||++++++.+.++..+++ +..+.+.+..++++.
T Consensus 159 vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~-l~~~gv~~~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~ 235 (332)
T 3lzw_A 159 ILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVEN-LHASKVNVLTPFVPAELIGEDK--IEQLVLEEVKGDRKE 235 (332)
T ss_dssp EECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHH-HHHSSCEEETTEEEEEEECSSS--CCEEEEEETTSCCEE
T ss_pred EECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHH-HhcCCeEEEeCceeeEEecCCc--eEEEEEEecCCCceE
Confidence 9999999999999999999999999999888766555554 5778999999999999987653 556888876677788
Q ss_pred EEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC--cchhhhhhhchHHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH--EWRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~--~~~~~~~A~~~g~~aa~~i~~~ 401 (540)
++++|.||+|+|++|+..++.. ++++ ++|++.+|+++ +|+.|||||+|||+.. .++.+..|+.+|+.||.+|.++
T Consensus 236 ~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 313 (332)
T 3lzw_A 236 ILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTM-ETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAY 313 (332)
T ss_dssp EEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTS-BCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCC-ceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHh
Confidence 8999999999999999988764 5666 67999999988 8999999999999842 2578999999999999999999
Q ss_pred HhcCcc
Q 009224 402 LVNNNL 407 (540)
Q Consensus 402 l~~~~~ 407 (540)
+.++..
T Consensus 314 l~~~~~ 319 (332)
T 3lzw_A 314 MDPKAR 319 (332)
T ss_dssp HCTTSC
T ss_pred hChhhc
Confidence 987654
No 15
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=100.00 E-value=8.1e-41 Score=344.00 Aligned_cols=315 Identities=17% Similarity=0.224 Sum_probs=237.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+|+|||||+||++||..|+++| .+|+|||+++..++....+.. .. .+.... ....+........++.+++++
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~--~~---~~~~~~-~~~~~~~~~~~~~~~~~i~~~ 75 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY--VI---GEVVED-RRYALAYTPEKFYDRKQITVK 75 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHH--HH---TTSSCC-GGGTBCCCHHHHHHHHCCEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHH--HH---cCCccc-hhhhhhcCHHHHHHhcCCEEE
Confidence 6999999999999999999988 579999997653321111110 00 000000 000011112345677899998
Q ss_pred Ee-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~ 248 (540)
.+ +|+.+|.+.+.+.+.. ++..+.||+||||||++|+.|++||...+....+.++..++.......+++++|||+
T Consensus 76 ~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGg 155 (437)
T 4eqs_A 76 TYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGA 155 (437)
T ss_dssp ETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred eCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECC
Confidence 86 8999999988887765 234689999999999999999999977665555544433332222235789999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCce
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE 323 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~ 323 (540)
|++|+|+|..++++|.+|+++++.+++++ ....+.+.+++.||++++++.+.+++... +.+ .++
T Consensus 156 G~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~------v~~-----~~g 224 (437)
T 4eqs_A 156 GYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITF-----KSG 224 (437)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTE------EEE-----TTS
T ss_pred ccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCCe------eee-----cCC
Confidence 99999999999999999999999988765 45566677889999999999999987652 554 234
Q ss_pred EEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhhchHHH
Q 009224 324 SVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAAGSGCI 393 (540)
Q Consensus 324 ~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~~~g~~ 393 (540)
+++++|.|++|+|++||++++.. +++++++|+|.||+++ +|+.|||||+|||++.+ +..++.|..||+.
T Consensus 225 ~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~-~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~ 303 (437)
T 4eqs_A 225 KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKF-ETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASI 303 (437)
T ss_dssp CEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTC-BCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHH
T ss_pred eEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCc-cCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHH
Confidence 67999999999999999998864 7889999999999998 89999999999998642 2467889999999
Q ss_pred HHHHHHHHHhc--Cc----ceeeecCCCccCCCCcCCCCCCCC
Q 009224 394 AALSVERYLVN--NN----LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 394 aa~~i~~~l~~--~~----~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+|.+|...-.. .. ....|+.|++++ ||++|+++++
T Consensus 304 ~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~--vGlte~~a~~ 344 (437)
T 4eqs_A 304 VAEQIAGNDTIEFKGFLGNNIVKFFDYTFAS--VGVKPNELKQ 344 (437)
T ss_dssp HHHHHHSCTTCCCCCBCCCEEEEETTEEEEE--EESCGGGGGG
T ss_pred HHHHHcCCCCcccccceeEEeeeeccceEEE--eeCCHHHHHh
Confidence 99999632111 11 125599999999 9999998864
No 16
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=100.00 E-value=1.3e-40 Score=342.70 Aligned_cols=339 Identities=20% Similarity=0.244 Sum_probs=254.3
Q ss_pred CCCCcccceeecCcccccccceeeccC-CCCCChhhhhhhhcc------cccccCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNST-SGPHHLPALRVRAAS------SVDALSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
|++..+...|+ ....|...|.++.. ..++.|..++++..+ +...........+||+|||||+||+++|..|
T Consensus 64 ~~p~~~grvCp--~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~~L 141 (456)
T 2vdc_G 64 NFPEICGRICP--QDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAEEL 141 (456)
T ss_dssp SCHHHHHHHCC--GGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHHHH
T ss_pred CCCccccccCC--CCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHHHH
Confidence 56777777774 34467788888876 899999999988643 1222222334678999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
++.|++|+|||+.+. +||.+.+ ++|.+..+.++.++..+.+++.|++++.++... ..+++ +.
T Consensus 142 ~~~G~~V~v~e~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~--~~ 203 (456)
T 2vdc_G 142 RAKGYEVHVYDRYDR---MGGLLVY--------GIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG-----RDASL--PE 203 (456)
T ss_dssp HHHTCCEEEECSSSS---CSTHHHH--------TSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT-----TTBCH--HH
T ss_pred HHCCCeEEEEeccCC---CCCeeee--------cCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec-----cEEEh--hH
Confidence 999999999999887 8887764 344445556788888899999999999885432 11222 11
Q ss_pred eEEEecEEEEccCCC-CCCCCCCCcccccCCCeeee-ee--------cCCC-------CCCCCCCEEEEEeCCccHHHHH
Q 009224 194 RKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC-AI--------CDGA-------SPLFKGQVLAVVGGGDTATEEA 256 (540)
Q Consensus 194 ~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~-~~--------~~~~-------~~~~~~k~v~VvG~G~~a~e~a 256 (540)
..+.||+||+|||+. |+.+++||.+. .++... .+ .... .....+++|+|||+|++|+|+|
T Consensus 204 ~~~~~d~vvlAtG~~~~~~~~ipG~~~---~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A 280 (456)
T 2vdc_G 204 LRRKHVAVLVATGVYKARDIKAPGSGL---GNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCV 280 (456)
T ss_dssp HHSSCSEEEECCCCCEECCTTCSCCTT---TTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHH
T ss_pred hHhhCCEEEEecCCCCCCCCCCCCCcC---CCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHH
Confidence 235699999999996 77788998653 222211 00 0000 1225689999999999999999
Q ss_pred HHHHhcCC-eEEEEEecccc-cc-cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc------c--------
Q 009224 257 IYLTKFAR-HVHLLVRREQL-RA-SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV------D-------- 319 (540)
Q Consensus 257 ~~l~~~g~-~v~li~~~~~~-~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~------~-------- 319 (540)
..+.+.|. +|++++|++.. ++ ....+. .+++.||++++++.+.++..+ +++.++.+... .
T Consensus 281 ~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~-~~~~~Gv~~~~~~~~~~i~~~--g~v~~v~~~~~~~~~~d~~G~~~~~~ 357 (456)
T 2vdc_G 281 RTAIRQGATSVKCLYRRDRKNMPGSQREVA-HAEEEGVEFIWQAAPEGFTGD--TVVTGVRAVRIHLGVADATGRQTPQV 357 (456)
T ss_dssp HHHHHTTCSEEEEECSSCSTTCSSCHHHHH-HHHHTTCEEECCSSSCCEEEE--EEEETTEEEEEEEEEEEECTTCCEEE
T ss_pred HHHHHcCCCEEEEEEeCCccCCCCCHHHHH-HHHHCCCEEEeCCCceEEeCC--CcEEEEEEEEEEecccCCcCCccccc
Confidence 99999987 59999998764 22 333343 356779999999999999753 44544554321 1
Q ss_pred -CCceEEEEccEEEEecccccCcc--ccc-cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHH
Q 009224 320 -TGEESVLEAKGLFYGIGHSPNSQ--LLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395 (540)
Q Consensus 320 -~g~~~~i~~D~vi~a~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa 395 (540)
+|++.++++|.||+|+|++|++. ++. .+++++++|+|.+|++.++|+.|+|||+|||+..+ ..+..|+.+|+.||
T Consensus 358 ~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~-~~v~~A~~~G~~aA 436 (456)
T 2vdc_G 358 IEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGA-SLVVWAIRDGRDAA 436 (456)
T ss_dssp EEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSC-CSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCc-hHHHHHHHHHHHHH
Confidence 24457899999999999999875 444 46888999999999983389999999999999874 78999999999999
Q ss_pred HHHHHHHhcCc
Q 009224 396 LSVERYLVNNN 406 (540)
Q Consensus 396 ~~i~~~l~~~~ 406 (540)
.+|.++|.++.
T Consensus 437 ~~i~~~L~~~~ 447 (456)
T 2vdc_G 437 EGIHAYAKAKA 447 (456)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhcCC
Confidence 99999998755
No 17
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=4.3e-38 Score=313.71 Aligned_cols=304 Identities=25% Similarity=0.366 Sum_probs=240.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc---CccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT---TEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+... ......++++ .....++.+++.+.+++++
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 79 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE---PGGQLTALYPEKYIYDVAGFP-KVYAKDLVKGLVEQVAPFN 79 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SCHHHHHTCTTSEECCSTTCS-SEEHHHHHHHHHHHHGGGC
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC---CCCeeeccCCCceeeccCCCC-CCCHHHHHHHHHHHHHHcC
Confidence 358999999999999999999999999999999876 67766422 1112333333 2356788888888888899
Q ss_pred CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC---CCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEE
Q 009224 170 AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA---TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLA 244 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~---~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 244 (540)
++++.+ +|+.++.+++.|.+.. ++..+.||+||+|||+ .|..|++||.+.+....++... .. .....+++++
T Consensus 80 ~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~--~~-~~~~~~~~v~ 156 (335)
T 2zbw_A 80 PVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAV--KS-KAEFQGKRVL 156 (335)
T ss_dssp CEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSC--SC-GGGGTTCEEE
T ss_pred CEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEec--Cc-hhhcCCCEEE
Confidence 998876 8999998877787876 4558999999999999 5777888887665544443221 11 1224689999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEeccccccc---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRAS---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG 321 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g 321 (540)
|||+|.+|+|+|..|.+.|.+|+++.|.+.+... ...+.+.+++.||++++++.+.++..+ +++..+.+....+|
T Consensus 157 viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~--~~~~~v~~~~~~~g 234 (335)
T 2zbw_A 157 IVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQ 234 (335)
T ss_dssp EECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEES--SSEEEEEEEETTTC
T ss_pred EECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccC--CCeeEEEEEECCCC
Confidence 9999999999999999999999999999877552 334455567789999999999999884 44556777654456
Q ss_pred ceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc--chhhhhhhchHHHHHHHH
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--WRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~--~~~~~~A~~~g~~aa~~i 398 (540)
+..++++|.||+|+|++|+++++.. +++++ +|++.||+++ +|+.|||||+|||+..+ ++.+..|+.+|+.||.+|
T Consensus 235 ~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i 312 (335)
T 2zbw_A 235 EELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDTTM-ATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHA 312 (335)
T ss_dssp CEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEEECCTTC-BCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCEEEEeecCCCCchHhhhcceecc-CCeeeeCCCC-CCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHH
Confidence 6678999999999999999887754 56666 6899999988 89999999999998632 468899999999999999
Q ss_pred HHHHhcCcc
Q 009224 399 ERYLVNNNL 407 (540)
Q Consensus 399 ~~~l~~~~~ 407 (540)
.+++.+...
T Consensus 313 ~~~l~~~~~ 321 (335)
T 2zbw_A 313 AAYANPALK 321 (335)
T ss_dssp HHHHCTTSC
T ss_pred HHHhhhhhc
Confidence 999976554
No 18
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=100.00 E-value=4.5e-39 Score=316.11 Aligned_cols=292 Identities=20% Similarity=0.332 Sum_probs=225.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCC--CCCChHHHHHHHHHHHHHhC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP--DGITGPDLMDRMRRQAERWG- 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 169 (540)
+.+||+||||||||++||.+|+++|++|+|||+.. +||.+.. ++|+++ +...+.++.+...+.+.+++
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~----~gg~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT----NRNRVTQ-----NSHGFITRDGIKPEEFKEIGLNEVMKYPS 75 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC----CGGGGSS-----CBCCSTTCTTBCHHHHHHHHHHHHTTSTT
T ss_pred CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC----CCCeeee-----ecCCccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 35899999999999999999999999999999865 5665432 233332 23567788777777777765
Q ss_pred CEEEEeeEEEEEeeC-CcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEe
Q 009224 170 AELHQEDVEFIDVKS-NPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVG 247 (540)
Q Consensus 170 v~~~~~~v~~i~~~~-~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG 247 (540)
+.++..++..++... +.+++.. ++.+++||+||||||++|+.|++||.+.+....+..+...+... .++++++|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~--~~~~~~~VIg 153 (304)
T 4fk1_A 76 VHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWE--LKDQPLIIIS 153 (304)
T ss_dssp EEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGG--GTTSCEEEEC
T ss_pred EEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhH--hcCCceeeec
Confidence 455666777766543 4566655 67889999999999999999999998887777777665554432 4677888888
Q ss_pred CCcc-HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEE
Q 009224 248 GGDT-ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL 326 (540)
Q Consensus 248 ~G~~-a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i 326 (540)
+|.. ++++|..+.+.+.+|+++.+.+.+. .. ..+.+++.|++++.+. +..+..+ ++++..+.+ .+++++
T Consensus 154 gG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--~~-~~~~l~~~g~~~~~~~-v~~~~~~-~~~~~~v~~-----~~g~~i 223 (304)
T 4fk1_A 154 ENEDHTLHMTKLVYNWSTDLVIATNGNELS--QT-IMDELSNKNIPVITES-IRTLQGE-GGYLKKVEF-----HSGLRI 223 (304)
T ss_dssp CSHHHHHHHHHHHTTTCSCEEEECSSCCCC--HH-HHHHHHTTTCCEECSC-EEEEESG-GGCCCEEEE-----TTSCEE
T ss_pred CCCchhhhHHHHHHhCCceEEEEeccccch--hh-hhhhhhccceeEeeee-EEEeecC-CCeeeeeec-----ccccee
Confidence 8865 6788889999999999998877653 23 3345678899998764 6666654 345555665 345668
Q ss_pred EccEEEEecccccCcccc-ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 327 EAKGLFYGIGHSPNSQLL-QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 327 ~~D~vi~a~G~~p~~~~~-~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
++|.++++.|..|+..++ ..+++++++|+|.||+++ +|++|||||+|||++.+++++..|+.+|+.||.+|.++|..+
T Consensus 224 ~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~e 302 (304)
T 4fk1_A 224 ERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFG-RTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDITDE 302 (304)
T ss_dssp CCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTC-BCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecceeeeeccccCChhhhhcCeEECCCCCEEECcCC-ccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899888888777666555 457899999999999998 999999999999998667889999999999999999999865
Q ss_pred c
Q 009224 406 N 406 (540)
Q Consensus 406 ~ 406 (540)
.
T Consensus 303 ~ 303 (304)
T 4fk1_A 303 R 303 (304)
T ss_dssp H
T ss_pred C
Confidence 3
No 19
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.7e-38 Score=307.15 Aligned_cols=289 Identities=20% Similarity=0.334 Sum_probs=232.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-CCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW-GAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 172 (540)
++||+|||||+||+++|..|++.|++|+|+|+... .+.+. .....+++. ......++..++.+.++++ ++++
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 74 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER----RNRFA--SHSHGFLGQ-DGKAPGEIIAEARRQIERYPTIHW 74 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC----GGGGC--SCCCSSTTC-TTCCHHHHHHHHHHHHTTCTTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc----ccccc--hhhcCCcCC-CCCCHHHHHHHHHHHHHhcCCeEE
Confidence 37999999999999999999999999999998653 22211 112233333 2466788899999999887 7888
Q ss_pred EEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 173 HQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
+.++|+.++.+++.|.+.. ++..+.||+||+|||+.|+.|.+||.+.+....+..+.+.+.. ...+++++|||+|.+
T Consensus 75 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~vvG~G~~ 152 (297)
T 3fbs_A 75 VEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGY--ELDQGKIGVIAASPM 152 (297)
T ss_dssp EESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTG--GGTTCEEEEECCSTT
T ss_pred EEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcch--hhcCCEEEEEecCcc
Confidence 8889999999988888877 5567999999999999999999999887766666655544332 246899999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
|+|+|..|.+.| +|+++.+.+. .......+.+++.||+++. +.+.++..++ .+.+. +++++++|.|
T Consensus 153 ~~e~a~~l~~~g-~v~~v~~~~~--~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~-----~v~~~-----~g~~~~~D~v 218 (297)
T 3fbs_A 153 AIHHALMLPDWG-ETTFFTNGIV--EPDADQHALLAARGVRVET-TRIREIAGHA-----DVVLA-----DGRSIALAGL 218 (297)
T ss_dssp HHHHHHHGGGTS-EEEEECTTTC--CCCHHHHHHHHHTTCEEEC-SCEEEEETTE-----EEEET-----TSCEEEESEE
T ss_pred HHHHHHHhhhcC-cEEEEECCCC--CCCHHHHHHHHHCCcEEEc-ceeeeeecCC-----eEEeC-----CCCEEEEEEE
Confidence 999999999999 9999998765 2234455567889999996 8899987653 35542 2356999999
Q ss_pred EEecccccCcccccc-ceecc--CCC-CEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 332 FYGIGHSPNSQLLQG-QVELD--SSG-YVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 332 i~a~G~~p~~~~~~~-~~~~~--~~g-~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
|+++|++|+..++.. +++++ ++| ++.+|+++ +|+.|||||+|||++. ++.+..|+.+|+.||.+|.+++.++..
T Consensus 219 i~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~-~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~~ 296 (297)
T 3fbs_A 219 FTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMK-QTTARGIFACGDVARP-AGSVALAVGDGAMAGAAAHRSILFPEM 296 (297)
T ss_dssp EECCEEECCCSCHHHHTCCEEEETTEEEECCCTTC-BCSSTTEEECSGGGCT-TCCHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred EEccCcccCchhHHhcCCccccCCCCceEEeCCCC-ccCCCCEEEEeecCCc-hHHHHHHHHhHHHHHHHHHHHHhhhhc
Confidence 999999999887754 55555 457 89999997 8999999999999996 489999999999999999999987653
No 20
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=100.00 E-value=3.8e-38 Score=328.96 Aligned_cols=322 Identities=20% Similarity=0.234 Sum_probs=238.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cc--cCCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VE--NFPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~--~~~~~~---~~~ 152 (540)
..+||+|||||+||++||..|++.|++|+|||+.. .||.+..... .. ...+++ ...
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~----~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 94 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK----LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF 94 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC----CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 45899999999999999999999999999999764 5555432110 00 111221 123
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC---CCCCcc
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL---NLPRED 218 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~---~ipg~~ 218 (540)
....+.. .+...+++.+++++.+++..++... +.+..++..+.||+||||||+.|..| ++||.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~--~~v~~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~ 172 (478)
T 3dk9_A 95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK--PTIEVSGKKYTAPHILIATGGMPSTPHESQIPGAS 172 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSS--CEEEETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCe--EEEEECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence 3333322 2334456679999999887776443 45556788899999999999999998 899876
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
... ........ ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ..+.+.+.+++.||++
T Consensus 173 ~~~-----~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i 245 (478)
T 3dk9_A 173 LGI-----TSDGFFQL--EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEV 245 (478)
T ss_dssp GSB-----CHHHHTTC--CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred eeE-----chHHhhch--hhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 211 11111111 12479999999999999999999999999999999887654 3445566678899999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCc--eEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCC
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGE--ESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~--~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++.+.++...+++....+.+.+...+. +.++++|.||+|+|++|++..+ ..+++++++|+|.||+++ +|+.|
T Consensus 246 ~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~ 324 (478)
T 3dk9_A 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-NTNVK 324 (478)
T ss_dssp ETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTC-BCSST
T ss_pred EeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCc-ccCCC
Confidence 99999999987655422224443322232 2789999999999999999843 336888999999999998 99999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh-----cCc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV-----NNN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
||||+|||++. +..+..|..+|+.||.+|..... ... ....|+.|+++. ||++|+++++.
T Consensus 325 ~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 390 (478)
T 3dk9_A 325 GIYAVGDVCGK-ALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGT--VGLTEDEAIHK 390 (478)
T ss_dssp TEEECGGGGCS-SCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred CEEEEEecCCC-CccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEE--eeCCHHHHHhh
Confidence 99999999976 47889999999999999975311 111 125689999999 99999988754
No 21
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=100.00 E-value=3.2e-37 Score=310.51 Aligned_cols=304 Identities=25% Similarity=0.385 Sum_probs=236.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc---CccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT---TEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+... ......++++. ....++.+++.+.+++++
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 88 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQ---LGGQLAALYPEKHIYDVAGFPE-VPAIDLVESLWAQAERYN 88 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHTCTTSEECCSTTCSS-EEHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC---CCCcccccCCCcccccCCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999999999876 77766421 11223344432 356788888888899999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEccCC---CCCCCCCCC-cccccCCCeeeeeecCCCCCCCCCCE
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFATGA---TAKRLNLPR-EDEFWSRGISACAICDGASPLFKGQV 242 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAtG~---~~~~~~ipg-~~~~~~~~~~~~~~~~~~~~~~~~k~ 242 (540)
++++.+ +|+.++..++ .|.+.. ++..+.||+||+|||+ .|..+++|| .+.+....++... .. .....+++
T Consensus 89 ~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~--~~-~~~~~~~~ 165 (360)
T 3ab1_A 89 PDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAV--KS-VEDFKGKR 165 (360)
T ss_dssp CEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSC--SC-GGGGTTCE
T ss_pred CEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEec--CC-HHHcCCCc
Confidence 998876 8999998765 677776 4558999999999999 567777888 5555444443321 11 12246899
Q ss_pred EEEEeCCccHHHHHHHHHhcCCeEEEEEeccccccc---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc
Q 009224 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRAS---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319 (540)
Q Consensus 243 v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~ 319 (540)
|+|||+|.+|+|+|..|.+.+.+|+++++.+.+... .+.+.+.+++.||++++++++.++..++ +++..+.+. ..
T Consensus 166 vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~-~~ 243 (360)
T 3ab1_A 166 VVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESN-GVLTRVHLR-SS 243 (360)
T ss_dssp EEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEET-TEEEEEEEE-ET
T ss_pred EEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCC-CceEEEEEE-ec
Confidence 999999999999999999999999999998876552 2223344566789999999999998763 455567765 23
Q ss_pred CCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc--chhhhhhhchHHHHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--WRQAVTAAGSGCIAAL 396 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~--~~~~~~A~~~g~~aa~ 396 (540)
+|+...+++|.||+|+|++|+.+++.. +++++ +|++.||+++ +|+.|||||+|||+..+ ++.+..|+.+|+.||.
T Consensus 244 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~ 321 (360)
T 3ab1_A 244 DGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDSHM-KTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVR 321 (360)
T ss_dssp TCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEECCTTS-BCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeeecCCC-cCCCCCEEEecCccCCCCccceeehhHHHHHHHHH
Confidence 455578999999999999999987764 56666 7899999988 89999999999998632 4788999999999999
Q ss_pred HHHHHHhcCcc
Q 009224 397 SVERYLVNNNL 407 (540)
Q Consensus 397 ~i~~~l~~~~~ 407 (540)
+|.+++.+...
T Consensus 322 ~i~~~l~~~~~ 332 (360)
T 3ab1_A 322 HSLSYIKPGEK 332 (360)
T ss_dssp HHHHHHSCC--
T ss_pred HHHhhcCCccc
Confidence 99999987655
No 22
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.7e-37 Score=323.45 Aligned_cols=331 Identities=21% Similarity=0.287 Sum_probs=240.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc----------------ccC--CCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV----------------ENF--PGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~----------------~~~--~~~~---~~ 151 (540)
..+||+|||||+||++||..|++.|++|+|||+.+. +||.+...... ..+ .++. ..
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~---~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST---YGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPK 100 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---CCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCc
Confidence 348999999999999999999999999999998776 77765432100 000 0111 11
Q ss_pred CChHHH-----------HHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCc
Q 009224 152 ITGPDL-----------MDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRE 217 (540)
Q Consensus 152 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~ 217 (540)
.....+ ...+...+++.+++++.+.+..++ .+.+.+.. ++ ..+.||+||||||+.| +.+||.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~ipg~ 176 (491)
T 3urh_A 101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLG--QGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPGV 176 (491)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECS--SSEEEEECTTSCEEEEECSEEEECCCEEC--CCBTTB
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEccCCCC--CCCCCc
Confidence 122222 222344566779999999877654 44566654 23 5799999999999986 456776
Q ss_pred cc-ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCe
Q 009224 218 DE-FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNI 291 (540)
Q Consensus 218 ~~-~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv 291 (540)
+. +....+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ..+.+.+.+++.||
T Consensus 177 ~~~~~~~~~~~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 254 (491)
T 3urh_A 177 EVAFDEKTIVSSTGALAL--EKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGI 254 (491)
T ss_dssp CCCCCSSSEECHHHHTSC--SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred ccccCCeeEEehhHhhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCC
Confidence 52 222233333322222 24589999999999999999999999999999999887764 34455566788999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++++.++..+++ ...+.+.+..+|+.+++++|.||+|+|++|++.++ ..+++++++|+|.||+++ +|+.|
T Consensus 255 ~v~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~ 331 (491)
T 3urh_A 255 DFKLGAKVTGAVKSGD--GAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF-QTSIA 331 (491)
T ss_dssp EEECSEEEEEEEEETT--EEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC-BCSST
T ss_pred EEEECCeEEEEEEeCC--EEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC-CCCCC
Confidence 9999999999987654 22355554334555789999999999999999874 236888999999999998 89999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC---c-ceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN---N-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
+|||+|||++.+ ..+..|..||+.||.+|....... . ....|+.|+++. ||++|+++++ .+++...+
T Consensus 332 ~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~~ 403 (491)
T 3urh_A 332 GVYAIGDVVRGP-MLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVAS--VGKTEEELKAAGVAYKIGK 403 (491)
T ss_dssp TEEECGGGSSSC-CCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEECSSSCEEE--EECCHHHHHHTTCCEEEEE
T ss_pred CEEEEEecCCCc-cchhHHHHHHHHHHHHHcCCCcccCCCCCCEEEEccCCeEE--EeCCHHHHHhCCCCEEEEE
Confidence 999999999764 789999999999999997422111 1 125689999999 9999988875 34444443
No 23
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=100.00 E-value=2.1e-37 Score=323.06 Aligned_cols=330 Identities=20% Similarity=0.279 Sum_probs=240.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------c--cC--CCCCC---
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------E--NF--PGFPD--- 150 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~--~~--~~~~~--- 150 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+...... . .+ .+++.
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~---~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET---LGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV 81 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---cCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence 358999999999999999999999999999999866 66654321100 0 00 01110
Q ss_pred CCChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC--C-eEEEecEEEEccCCCCCCCCCCC
Q 009224 151 GITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG--E-RKVKCHSIVFATGATAKRLNLPR 216 (540)
Q Consensus 151 ~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~--~-~~~~~d~lviAtG~~~~~~~ipg 216 (540)
......+.. .+...+++.+++++.+++..++ .+.+.+... + ..+.||+||+|||++|..|++||
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g 159 (474)
T 1zmd_A 82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITG--KNQVTATKADGGTQVIDTKNILIATGSEVTPFPGIT 159 (474)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEE--TTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEec--CCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCC
Confidence 112222222 2345667789999999877664 456777653 3 57999999999999999998888
Q ss_pred cccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCC
Q 009224 217 EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPN 290 (540)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~g 290 (540)
.+.. .+.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.|
T Consensus 160 ~~~~---~v~t~~~~~~~~--~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 160 IDED---TIVSSTGALSLK--KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp CCSS---SEECHHHHTTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred CCcC---cEEcHHHHhhcc--ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 6531 122221111111 2479999999999999999999999999999999887654 2345556678899
Q ss_pred eEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCC
Q 009224 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSV 367 (540)
Q Consensus 291 v~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~ 367 (540)
|++++++++.++..++++.+ .+.+.+..++++.++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.
T Consensus 235 v~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~ 312 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF-QTKI 312 (474)
T ss_dssp CEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC-BCSS
T ss_pred CEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC-ccCC
Confidence 99999999999987654322 244433224556789999999999999999873 3 36788888999999998 8999
Q ss_pred CceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 368 EGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 368 ~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|+|||+|||+..+ .....|..||+.||.+|...-.. ... ...|+.|++++ ||+++.++++ .+++...
T Consensus 313 ~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 384 (474)
T 1zmd_A 313 PNIYAIGDVVAGP-MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAW--VGKSEEQLKEEGIEYKVG 384 (474)
T ss_dssp TTEEECGGGSSSC-CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEECSSSEEEE--EECCHHHHHHHTCCEEEE
T ss_pred CCEEEeeecCCCC-ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEEECCCCeEE--EeCCHHHHHhcCCCEEEE
Confidence 9999999999864 67889999999999999742110 111 14578899999 9999887753 3344433
No 24
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-37 Score=323.58 Aligned_cols=328 Identities=16% Similarity=0.218 Sum_probs=235.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------ccCCCCCCCCChHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------ENFPGFPDGITGPDLM 158 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~~~~~~~~~~~~~~~~ 158 (540)
.+||+|||||+||++||..|++.|++|+|||+.+. +||.+...... ..++..+.......+.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~---~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE---LGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ 80 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC---CCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 48999999999999999999999999999998776 77776542110 0011111223333332
Q ss_pred ------------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeE--EEecEEEEccCCCCCCCCCCCcccccCC
Q 009224 159 ------------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERK--VKCHSIVFATGATAKRLNLPREDEFWSR 223 (540)
Q Consensus 159 ------------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~--~~~d~lviAtG~~~~~~~ipg~~~~~~~ 223 (540)
..+...+++.+++++.+++..++. +.+.+.. ++.. +.||+||+|||+.|+.|++||.+.++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~--~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t- 157 (466)
T 3l8k_A 81 DRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLT- 157 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEET--TEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBC-
T ss_pred HHHHhheeccccchHHHHHHhCCCEEEEeEEEEecC--CeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEe-
Confidence 233334455689999998888874 4566655 4556 999999999999999999999763211
Q ss_pred Ceeeee-ecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc---cHHHHHHHhcCCCeEEEeCceE
Q 009224 224 GISACA-ICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---~~~~~~~~l~~~gv~~~~~~~v 299 (540)
..... ..... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ..+..+.+.+...|++++++++
T Consensus 158 -~~~~~~~~~~l--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~v~i~~~~~v 234 (466)
T 3l8k_A 158 -SDDIFGYKTSF--RKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLNIKFNSPV 234 (466)
T ss_dssp -HHHHHSTTCSC--CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCCEECSCCE
T ss_pred -HHHHHHHHHHH--hhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCEEEEEECCEE
Confidence 11111 11111 13579999999999999999999999999999999887654 2233322222222999999999
Q ss_pred EEEeeCCCCceeeEEEEEcc-CCceEEEEccEEEEecccccCccc--cccceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVD-TGEESVLEAKGLFYGIGHSPNSQL--LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~--~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..++++. +.+.... +|+..++++|.||+|+|++|++.+ ...+++++++| |.||+++ +|+.|||||+|||
T Consensus 235 ~~i~~~~~~~---v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~-~t~~~~Iya~GD~ 309 (466)
T 3l8k_A 235 TEVKKIKDDE---YEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETM-KTNIPNVFATGDA 309 (466)
T ss_dssp EEEEEEETTE---EEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTC-BCSSTTEEECGGG
T ss_pred EEEEEcCCCc---EEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCc-cCCCCCEEEEEec
Confidence 9998764222 3333221 455568999999999999999983 24478889999 9999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHH--H----hcCcc-eeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERY--L----VNNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~--l----~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
++. ++.+..|..||+.||.+|... . ..... ...|+.|++++ ||++|+++++ .+++...+
T Consensus 310 ~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~~~~~~ 376 (466)
T 3l8k_A 310 NGL-APYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSY--VGILPSKARKMGIEIVEAE 376 (466)
T ss_dssp TCS-CCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEE--EECCHHHHHHHTCCEEEEE
T ss_pred CCC-CccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEE--ecCCHHHHHhCCCCEEEEE
Confidence 997 478899999999999999743 1 11111 25588999999 9999988775 33444433
No 25
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-37 Score=323.09 Aligned_cols=314 Identities=18% Similarity=0.193 Sum_probs=231.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCc-ceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPG-GQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
+||+|||||+||++||..|+++ |++|+|||+++..++.. +...... +. .....++.....+.+++++++
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~gi~ 74 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFN------HT--INELHEARYITEEELRRQKIQ 74 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------CCCCHHHHHHTTEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhc------CC--CCCHHHhhcCCHHHHHHCCCE
Confidence 6899999999999999999998 89999999987633221 2211110 00 001122222244566788999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC----CCCCCCEEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS----PLFKGQVLA 244 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~----~~~~~k~v~ 244 (540)
++.+ +|+.++.+.+.+.+.. ++..+.||+||+|||++|..|++||.+. ..+.......... ....+++++
T Consensus 75 ~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vv 151 (452)
T 3oc4_A 75 LLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQT---EKLLKYKFLSGALAAVPLLENSQTVA 151 (452)
T ss_dssp EECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTC---TTEEEGGGCC----CCHHHHTCSEEE
T ss_pred EEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCC---CCEEEeCCHHHHHHHHHHHhcCCEEE
Confidence 8765 8999999988887742 4467999999999999999999998764 2222222111111 123689999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
|||+|++|+|+|..|.+.|.+|+++.+.+.+.+ ..+.+.+.+++.||++++++.+.++...++ ++ .+.+
T Consensus 152 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~v-~v~~--- 226 (452)
T 3oc4_A 152 VIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETAN-GI-VLET--- 226 (452)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSS-CE-EEEE---
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCC-eE-EEEE---
Confidence 999999999999999999999999999887654 244556678899999999999999986543 33 2333
Q ss_pred cCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhhc
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAAG 389 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~~ 389 (540)
. ++ ++++|.||+|+|++|++.++...++++++|+|.||+++ +|+.|+|||+|||+..+ +..+..|..
T Consensus 227 ~--~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~ 302 (452)
T 3oc4_A 227 S--EQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYL-QTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR 302 (452)
T ss_dssp S--SC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTC-BCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHH
T ss_pred C--CC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCc-cCCCCCEEEEEeeEEeccccCCceeecchHHHHHH
Confidence 2 22 69999999999999999988766788899999999998 89999999999999853 247889999
Q ss_pred hHHHHHHHHHHHHhcC-----cceeeecCCCccCCCCcCCCCCCCC
Q 009224 390 SGCIAALSVERYLVNN-----NLLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 390 ~g~~aa~~i~~~l~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+.||.+|...-... ..+..+..|++++ ||++|+++++
T Consensus 303 ~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~--vG~te~~a~~ 346 (452)
T 3oc4_A 303 TGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLAS--TGLTETEGLF 346 (452)
T ss_dssp HHHHHTTSSSSCCCCCCCCCCCEEEEETTEEEEE--EECCSGGGGG
T ss_pred HHHHHHHHhcCCCccCCCccccEEEEEcCeeEEE--ecCCHHHHHH
Confidence 9999999986421111 1112233568888 9999998875
No 26
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=100.00 E-value=6.3e-37 Score=319.87 Aligned_cols=330 Identities=19% Similarity=0.262 Sum_probs=236.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cc-cC--CCCC----CC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VE-NF--PGFP----DG 151 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~-~~--~~~~----~~ 151 (540)
.+||+|||||+||+++|..|++.|++|+|||+.+. +||.+..... .. .+ .+++ ..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~---~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~ 81 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK---LGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK 81 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---cCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 58999999999999999999999999999999665 6665432100 00 00 0111 01
Q ss_pred CChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eE------EEecEEEEccCCCCCC
Q 009224 152 ITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RK------VKCHSIVFATGATAKR 211 (540)
Q Consensus 152 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~------~~~d~lviAtG~~~~~ 211 (540)
....++. ..+...+++.+++++.++.... +.+.+.+.. ++ .. +.||+||+|||++|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~- 158 (478)
T 1v59_A 82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE--DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT- 158 (478)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES--SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC-
Confidence 1222222 2234556778999999866543 455677764 33 45 999999999999874
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
.+||.+. ....+.......... ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+
T Consensus 159 -~~~g~~~-~~~~v~~~~~~~~~~--~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l 234 (478)
T 1v59_A 159 -PFPGIEI-DEEKIVSSTGALSLK--EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFL 234 (478)
T ss_dssp -CCTTCCC-CSSSEECHHHHTTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHH
T ss_pred -CCCCCCC-CCceEEcHHHHHhhh--ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHH
Confidence 3566442 222232222222222 2479999999999999999999999999999999987754 344555667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcc--ccc-cceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ--LLQ-GQVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~ 363 (540)
++.||++++++.+.++..++++....+.+.+..++++.++++|.||+|+|++|++. ++. .+++++++|+|.||+++
T Consensus 235 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~- 313 (478)
T 1v59_A 235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQF- 313 (478)
T ss_dssp HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTS-
T ss_pred HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCC-
Confidence 88999999999999998721122334555543345567899999999999999997 444 36888889999999998
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+|+.|+|||+|||+..+ .....|..||+.||.+|...-. .... ...|+.|++++ ||+++.++++ .+++...
T Consensus 314 ~t~~~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 389 (478)
T 1v59_A 314 NSKFPHIKVVGDVTFGP-MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAW--VGKTEEQLKEAGIDYKIG 389 (478)
T ss_dssp BCSSTTEEECGGGSSSC-CCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred ccCCCCEEEeeccCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEE--EECCHHHHHHcCCCEEEE
Confidence 89999999999999864 6788999999999999975211 0111 25588899999 9999987763 3444443
No 27
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=100.00 E-value=2.5e-37 Score=325.57 Aligned_cols=323 Identities=21% Similarity=0.323 Sum_probs=237.8
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------cc------CCCC
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------EN------FPGF 148 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~~------~~~~ 148 (540)
.+...+||+|||||+||+++|..|++.|++|+|||+... +||.+...... .+ ++..
T Consensus 39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~---~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~ 115 (523)
T 1mo9_A 39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF---LGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDM 115 (523)
T ss_dssp TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCC
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC---CCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHH
Confidence 345568999999999999999999999999999999875 55554321100 00 1111
Q ss_pred CC-CCChHHHHHHHH-------HHH-----HHhCCEEE-EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 149 PD-GITGPDLMDRMR-------RQA-----ERWGAELH-QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 149 ~~-~~~~~~~~~~~~-------~~~-----~~~~v~~~-~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
.. .....++.+++. ..+ ++.+++++ .+++..++. +.+.+ ++..+.||+||+|||+.|..|++
T Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~--~g~~~~~d~lViATGs~p~~p~i 191 (523)
T 1mo9_A 116 TEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEA--AGKVFKAKNLILAVGAGPGTLDV 191 (523)
T ss_dssp TTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEE--TTEEEEBSCEEECCCEECCCCCS
T ss_pred HhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEE--CCEEEEeCEEEECCCCCCCCCCC
Confidence 11 112455555543 344 66789998 778888874 33433 56789999999999999999999
Q ss_pred CCcccccCCCeeeeeecC-CCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 215 PREDEFWSRGISACAICD-GASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~-~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
||.+.. .+....... .... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++
T Consensus 192 ~G~~~~---~v~~~~~~~~~l~~-~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 267 (523)
T 1mo9_A 192 PGVNAK---GVFDHATLVEELDY-EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKE 267 (523)
T ss_dssp TTTTSB---TEEEHHHHHHHCCS-CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHH
T ss_pred CCcccC---cEeeHHHHHHHHHh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHh
Confidence 987541 122221111 1111 2349999999999999999999999999999999887655 23445566788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE-EEEccEEEEecccccCcc-ccc-cceeccCCCCEEeCCCcccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES-VLEAKGLFYGIGHSPNSQ-LLQ-GQVELDSSGYVIVEEGTAKT 365 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~-~i~~D~vi~a~G~~p~~~-~~~-~~~~~~~~g~i~vd~~~~~t 365 (540)
.||++++++.+.++..++++++.++.+.. . +++ ++++|.||+|+|++|++. ++. .+++++++|+|.||+++ +|
T Consensus 268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~-~--~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~-~t 343 (523)
T 1mo9_A 268 QGMEIISGSNVTRIEEDANGRVQAVVAMT-P--NGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYL-QT 343 (523)
T ss_dssp TTCEEESSCEEEEEEECTTSBEEEEEEEE-T--TEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTS-BC
T ss_pred CCcEEEECCEEEEEEEcCCCceEEEEEEE-C--CCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCC-cc
Confidence 99999999999999886555543344433 2 234 799999999999999998 554 47888889999999998 89
Q ss_pred CCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 366 SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 366 ~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+.|+|||+|||++.+ .....|..||+.||.+|...-. .... ...|+.|+++. ||+++.++++
T Consensus 344 ~~~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~ 409 (523)
T 1mo9_A 344 SVPNVYAVGDLIGGP-MEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSF--LGMGEEEARA 409 (523)
T ss_dssp SSTTEEECGGGGCSS-CSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSEEEE--EECCHHHHHH
T ss_pred CCCCEEEEeecCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEE--EeCCHHHHHh
Confidence 999999999999864 6888999999999999964111 0111 24588899999 9999887764
No 28
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=100.00 E-value=1.4e-37 Score=325.26 Aligned_cols=326 Identities=18% Similarity=0.200 Sum_probs=236.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-----CCCCcceeeccCc------------------cccCCCC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-----GGVPGGQLMTTTE------------------VENFPGF- 148 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-----~~~~gg~~~~~~~------------------~~~~~~~- 148 (540)
..+||+|||||+||++||..|++.|++|+|||+.+. ....||.+..... ...+ ++
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~-g~~ 83 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHY-GWE 83 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 458999999999999999999999999999997321 1125665433210 0011 11
Q ss_pred ---CCCCChHHHHHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCC
Q 009224 149 ---PDGITGPDLMDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 149 ---~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~ 211 (540)
+.......+..+. ...+++.+++++.+++..++ .+.+.+.. ++ ..+.||+||||||++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 161 (488)
T 3dgz_A 84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVD--EHTVRGVDKGGKATLLSAEHIVIATGGRPRY 161 (488)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESS--SSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence 1223444433332 23455679999988877655 34555554 23 579999999999999999
Q ss_pred CC-CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHh
Q 009224 212 LN-LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVF 286 (540)
Q Consensus 212 ~~-ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l 286 (540)
|+ +||.+... +. ....... ...+++++|||+|++|+|+|..|++.|.+|+++.+...+.. ..+.+.+.+
T Consensus 162 p~~i~G~~~~~---~~-~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l 235 (488)
T 3dgz_A 162 PTQVKGALEYG---IT-SDDIFWL--KESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHM 235 (488)
T ss_dssp CSSCBTHHHHC---BC-HHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHH
T ss_pred CCCCCCccccc---Cc-HHHHHhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHH
Confidence 98 99975421 11 1111111 13578899999999999999999999999999998754332 344556667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceecc-CCCCEEeCCCc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELD-SSGYVIVEEGT 362 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~-~~g~i~vd~~~ 362 (540)
++.||++++++.+.++...+++.+ .+.+.+..+++..++++|.||+|+|++|++.++. .+++++ ++|+|.||+++
T Consensus 236 ~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~ 314 (488)
T 3dgz_A 236 ESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQE 314 (488)
T ss_dssp HHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTS
T ss_pred HHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCC
Confidence 889999999999999987544433 3555554345555789999999999999998752 368888 78999999998
Q ss_pred cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 363 AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 363 ~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|+.|||||+|||+...+..+..|..||+.||.+|...... ... ...|+.|+++. ||++|+++++.
T Consensus 315 -~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 385 (488)
T 3dgz_A 315 -ATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGC--VGLSEEEAVAL 385 (488)
T ss_dssp -BCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEE--EECCHHHHHHH
T ss_pred -ccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEE--EeCCHHHHHhh
Confidence 89999999999998544578889999999999999742211 111 25588999999 99999888754
No 29
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=100.00 E-value=2.8e-37 Score=322.71 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=237.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC------CCcceeeccCc------------------cccCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG------VPGGQLMTTTE------------------VENFPGF 148 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~------~~gg~~~~~~~------------------~~~~~~~ 148 (540)
..+||+|||||+||++||..|++.|++|+|||+..... ..||.+..... ...+ ++
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~-g~ 86 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY-GW 86 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc-Cc
Confidence 45899999999999999999999999999999532111 25665543210 0011 11
Q ss_pred C----CCCChHHHHHHHH-----------HHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCC
Q 009224 149 P----DGITGPDLMDRMR-----------RQAERWGAELHQEDVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 149 ~----~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~ 211 (540)
. ....+..+..+.. ..+++.+++++.+.+..++ .+.+.+.. ++ ..+.||+||||||++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~g~~~~~~d~lviATGs~p~~ 164 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVD--SHTLLAKLKSGERTITAQTFVIAVGGRPRY 164 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEE--TTEEEEECTTCCEEEEEEEEEECCCEEECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEcc--CCEEEEEeCCCeEEEEcCEEEEeCCCCcCC
Confidence 1 1234444433332 2355678999998877665 34566654 23 479999999999999999
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhc
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFN 287 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~ 287 (540)
|++||.+... +. ....... ...+++++|||+|++|+|+|..|++.|.+|+++.+...+.. ....+.+.++
T Consensus 165 p~i~G~~~~~---~~-~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~ 238 (483)
T 3dgh_A 165 PDIPGAVEYG---IT-SDDLFSL--DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASME 238 (483)
T ss_dssp CSSTTHHHHC---BC-HHHHTTC--SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCccccc---Cc-HHHHhhh--hhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHHHHHH
Confidence 9999975432 11 1111111 13578999999999999999999999999999998543322 3445556678
Q ss_pred CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccc
Q 009224 288 NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAK 364 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~ 364 (540)
+.||++++++.+.++...+++.+ .+.+.+..++...++++|.||+|+|++|++.++. .++++++ |+|.||+++ +
T Consensus 239 ~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~-~ 315 (483)
T 3dgh_A 239 ERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQE-A 315 (483)
T ss_dssp HTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTC-B
T ss_pred hCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCC-c
Confidence 89999999999999987655443 3666664445567899999999999999998763 3688888 999999998 8
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+.|+|||+|||+...+..+..|..||+.||.+|...-. .... ...|+.|+++. ||++|+++++.
T Consensus 316 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 385 (483)
T 3dgh_A 316 TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYAC--VGLSEEDAVKQ 385 (483)
T ss_dssp CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEE--EECCHHHHHHH
T ss_pred cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEE--EeCCHHHHHhh
Confidence 999999999999854357889999999999999863211 1111 25588999999 99999888753
No 30
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=100.00 E-value=3.1e-36 Score=314.51 Aligned_cols=331 Identities=20% Similarity=0.311 Sum_probs=236.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCcc----------------c--cCCCCC--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEV----------------E--NFPGFP-- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~----------------~--~~~~~~-- 149 (540)
..+||+|||||+||++||..|++.|++|+|||+....+ ..||.+...... . ...++.
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 35899999999999999999999999999999976210 134443221000 0 000111
Q ss_pred -CCCChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCC
Q 009224 150 -DGITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 150 -~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~i 214 (540)
.......+. ..+...+++.+++++.+++..++ .+.+.+.. ++ ..+.||+||+|||+.|..|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~ 159 (476)
T 3lad_A 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLA--GKKVEVTAADGSSQVLDTENVILASGSKPVEIPP 159 (476)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECS--TTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 112222222 22334466779999999877654 45666664 33 578999999999999876654
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCC
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNP 289 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~ 289 (540)
++.+. ..+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ..+.+.+.+++.
T Consensus 160 ~~~~~---~~v~~~~~~~~~--~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 234 (476)
T 3lad_A 160 APVDQ---DVIVDSTGALDF--QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQ 234 (476)
T ss_dssp SCCCS---SSEEEHHHHTSC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHT
T ss_pred CCCCc---ccEEechhhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhC
Confidence 44221 222222222221 23589999999999999999999999999999999987765 344555667889
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccC
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~ 366 (540)
||++++++++.++..++++ + .+.+.+. ++ .+++++|.||+|+|++|++.++ ..+++++++|+|.||+++ +|+
T Consensus 235 Gv~v~~~~~v~~i~~~~~~-~-~v~~~~~-~g-~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~ 309 (476)
T 3lad_A 235 GLKILLGARVTGTEVKNKQ-V-TVKFVDA-EG-EKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC-ATS 309 (476)
T ss_dssp TEEEEETCEEEEEEECSSC-E-EEEEESS-SE-EEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS-BCS
T ss_pred CCEEEECCEEEEEEEcCCE-E-EEEEEeC-CC-cEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc-ccC
Confidence 9999999999999876542 2 2444331 12 3679999999999999999754 346888999999999998 899
Q ss_pred CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc----ceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 367 VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN----LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 367 ~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
.|||||+|||++.+ ..+..|..||+.||.+|.......+ ....|+.|++++ ||++|+++++ .+++...+
T Consensus 310 ~~~Iya~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vGlte~~a~~~g~~~~~~~ 383 (476)
T 3lad_A 310 VPGVYAIGDVVRGA-MLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAG--VGKTEQALKAEGVAINVGV 383 (476)
T ss_dssp STTEEECGGGSSSC-CCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEECSSSEEEE--EECCHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEccCCCc-ccHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEECcCCEEE--eeCCHHHHHhcCCCEEEEE
Confidence 99999999999764 6889999999999999974321111 225689999999 9999988875 34444433
No 31
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=100.00 E-value=2.5e-36 Score=315.26 Aligned_cols=326 Identities=19% Similarity=0.254 Sum_probs=233.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc------------------c--ccCCCCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE------------------V--ENFPGFPDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~------------------~--~~~~~~~~~~ 152 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+..... . ...+......
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~---~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~ 81 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT---LGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL 81 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC---SSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---CCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 358999999999999999999999999999999665 5554321100 0 0111111122
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC------------eEEEecEEEEccCCC
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE------------RKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~------------~~~~~d~lviAtG~~ 208 (540)
....+.. .+...+++.+++++.+++..+ +.+.+.+.. ++ ..++||+||+|||++
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~ 159 (482)
T 1ojt_A 82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFL--DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR 159 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE--ETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEc--cCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCC
Confidence 3333322 234556778999999876654 345666643 23 579999999999999
Q ss_pred CCCCC-CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHH
Q 009224 209 AKRLN-LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQ 282 (540)
Q Consensus 209 ~~~~~-ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~ 282 (540)
|..|+ +|. +. .+.......... ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+
T Consensus 160 p~~~~~i~~-~~----~v~~~~~~~~~~--~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l 232 (482)
T 1ojt_A 160 VTKLPFIPE-DP----RIIDSSGALALK--EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW 232 (482)
T ss_dssp ECCCSSCCC-CT----TEECHHHHTTCC--CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHH
T ss_pred CCCCCCCCc-cC----cEEcHHHHhccc--ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHH
Confidence 88776 553 21 122221111111 2489999999999999999999999999999999987765 34455
Q ss_pred HHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeC
Q 009224 283 DRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVE 359 (540)
Q Consensus 283 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd 359 (540)
.+.+++.||++++++++.++..+++ ...+.+.+. .+.++++++|.||+|+|++|+++++ . .+++++++|+|.||
T Consensus 233 ~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~-~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd 309 (482)
T 1ojt_A 233 QKQNEYRFDNIMVNTKTVAVEPKED--GVYVTFEGA-NAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVD 309 (482)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEETT--EEEEEEESS-SCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCC
T ss_pred HHHHHhcCCEEEECCEEEEEEEcCC--eEEEEEecc-CCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeC
Confidence 6678889999999999999987643 223444321 1223458899999999999999874 3 36888888999999
Q ss_pred CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCc-ceeeecCCCccCCCCcCCCCCCCC-ccee
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDI 434 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 434 (540)
+++ +|+.|+|||+|||++.+ ..+..|..||+.||.+|...-. ... ....|+.|++++ ||++++++++ .+++
T Consensus 310 ~~~-~t~~~~IyA~GD~~~~~-~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~~ 385 (482)
T 1ojt_A 310 KQM-RTNVPHIYAIGDIVGQP-MLAHKAVHEGHVAAENCAGHKAYFDARVIPGVAYTSPEVAW--VGETELSAKASARKI 385 (482)
T ss_dssp TTS-BCSSTTEEECGGGTCSS-CCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECSSSCEEE--EECCHHHHHHHTCCE
T ss_pred CCc-ccCCCCEEEEEcccCCC-ccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEcCCCeEE--EeCCHHHHHhcCCCE
Confidence 998 89999999999999864 6888999999999999974110 111 124588999999 9999988764 3344
Q ss_pred eee
Q 009224 435 TCT 437 (540)
Q Consensus 435 ~~~ 437 (540)
...
T Consensus 386 ~~~ 388 (482)
T 1ojt_A 386 TKA 388 (482)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 32
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=100.00 E-value=1.2e-36 Score=316.72 Aligned_cols=327 Identities=18% Similarity=0.249 Sum_probs=237.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccc------------c----C--CCCC----CC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE------------N----F--PGFP----DG 151 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~------------~----~--~~~~----~~ 151 (540)
.+||+|||||+||++||..|++.|++|+|||+.+. +||.+....... . + .+++ ..
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~---~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA---LGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC---cCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 47999999999999999999999999999999866 666543211000 0 0 0111 01
Q ss_pred CChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCc
Q 009224 152 ITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRE 217 (540)
Q Consensus 152 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~ 217 (540)
....++. ..+...+++.+++++.+++..++ .+.+.+.. ++ ..+.||+||+|||+.|..|+++|.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~ 156 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFET--AHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPF 156 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCC
Confidence 1222222 22345667789999999877665 45677765 44 679999999999999998888886
Q ss_pred ccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh-cCCCe
Q 009224 218 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF-NNPNI 291 (540)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l-~~~gv 291 (540)
+. ..+.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+ ++.||
T Consensus 157 ~~---~~v~t~~~~~~~~--~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv 231 (468)
T 2qae_A 157 DE---KVVLSSTGALALP--RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKM 231 (468)
T ss_dssp CS---SSEECHHHHHTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCC
T ss_pred Cc---CceechHHHhhcc--cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCc
Confidence 43 1222221111111 2579999999999999999999999999999999987764 344556667 88999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++++.++..++++ ..+.+.. .+|+.+++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|
T Consensus 232 ~i~~~~~v~~i~~~~~~--~~v~~~~-~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~ 307 (468)
T 2qae_A 232 KFMTSTKVVGGTNNGDS--VSLEVEG-KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHF-ETSIP 307 (468)
T ss_dssp EEECSCEEEEEEECSSS--EEEEEEC-C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTS-BCSST
T ss_pred EEEeCCEEEEEEEcCCe--EEEEEEc-CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCc-ccCCC
Confidence 99999999999876542 2244431 13444679999999999999999874 3 36788888999999998 89999
Q ss_pred ceEEccccCC-CcchhhhhhhchHHHHHHHHHHHHh---cCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 369 GVFAAGDVQD-HEWRQAVTAAGSGCIAALSVERYLV---NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 369 ~iya~GD~~~-~~~~~~~~A~~~g~~aa~~i~~~l~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+|||+|||++ . ++....|..||+.||.+|...-. ... ....|+.|++++ ||++++++++ .+++...
T Consensus 308 ~IyA~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 379 (468)
T 2qae_A 308 DVYAIGDVVDKG-PMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVAS--VGKSEDELKKEGVAYKVG 379 (468)
T ss_dssp TEEECGGGBSSS-CSCHHHHHHHHHHHHHHHTTCCCCCCTTSCCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred CEEEeeccCCCC-CccHhHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEE--EeCCHHHHHhcCCCEEEE
Confidence 9999999998 5 37889999999999999974211 111 124588999999 9999887764 3344443
No 33
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=7.4e-37 Score=318.75 Aligned_cols=329 Identities=23% Similarity=0.306 Sum_probs=238.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccc---------------c-C--CCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE---------------N-F--PGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~---------------~-~--~~~~---~~ 151 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+....... . + .+++ ..
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~---~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA---LGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 81 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS---SCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC---ccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence 458999999999999999999999999999999865 566543211000 0 0 0110 00
Q ss_pred CChHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCc
Q 009224 152 ITGPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRE 217 (540)
Q Consensus 152 ~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~ 217 (540)
..... +...+...+++.+++++.+++..++ .+.+.+.. ++ ..++||+||+|||++|..|+++|.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~ 159 (470)
T 1dxl_A 82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTI 159 (470)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCC
Confidence 11222 2222345667789999999776654 45666654 34 679999999999999998888885
Q ss_pred ccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeE
Q 009224 218 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNIT 292 (540)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~ 292 (540)
+. ..+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||+
T Consensus 160 ~~---~~v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~ 234 (470)
T 1dxl_A 160 DE---KKIVSSTGALAL--SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK 234 (470)
T ss_dssp CS---SSEECHHHHTTC--SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC
T ss_pred Cc---ccEEeHHHhhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCE
Confidence 43 112222111111 12579999999999999999999999999999999987754 344556667889999
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCc
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEG 369 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~ 369 (540)
+++++++.++..++++ ..+.+.+..+|+++++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+
T Consensus 235 i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~~~~ 311 (470)
T 1dxl_A 235 FKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERF-STNVSG 311 (470)
T ss_dssp EECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTC-BCSSTT
T ss_pred EEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCC-ccCCCC
Confidence 9999999999876532 2244443224555789999999999999999873 3 36888888999999998 899999
Q ss_pred eEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 370 VFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 370 iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|||+|||++.+ ..+..|..||+.||.+|...-. .... ...|+.|++++ ||+++.++++ .+++...
T Consensus 312 Iya~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 381 (470)
T 1dxl_A 312 VYAIGDVIPGP-MLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVAS--VGKTEEQVKETGVEYRVG 381 (470)
T ss_dssp EEECSTTSSSC-CCHHHHHHHHHHHHHHHTTSCCCCCTTSCCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred EEEEeccCCCC-ccHHHHHHHHHHHHHHHcCCCcCCCCCCCCEEEECCCceEE--EcCCHHHHHhcCCcEEEE
Confidence 99999999863 6788999999999999974211 1111 14588899999 9999887763 3344443
No 34
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=100.00 E-value=5.8e-37 Score=322.25 Aligned_cols=327 Identities=18% Similarity=0.184 Sum_probs=232.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-----CCCcceeeccCc------------------cccCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-----GVPGGQLMTTTE------------------VENFPGFP 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-----~~~gg~~~~~~~------------------~~~~~~~~ 149 (540)
..+||+|||||+||++||..|++.|++|+|||+.+.. ...||.+..... ...+ ++.
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~-g~~ 109 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY-GWK 109 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TBC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 4589999999999999999999999999999985411 025665433210 0001 111
Q ss_pred ----CCCChHHHHHHHH-----------HHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCC
Q 009224 150 ----DGITGPDLMDRMR-----------RQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 150 ----~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~ 211 (540)
.......+..+.. ..+++.+++++.+++..++. +.+.+.. ++ ..+.||+||||||++|+.
T Consensus 110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~--~~v~v~~~~g~~~~i~~d~lViATGs~p~~ 187 (519)
T 3qfa_A 110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPRY 187 (519)
T ss_dssp CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET--TEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence 1233343333322 34566799999998887764 4555654 22 379999999999999999
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhc
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFN 287 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~ 287 (540)
|++||.+.+.. . ....... ...+++++|||+|++|+|+|..|++.|.+|+++.+...+.. ..+.+.+.++
T Consensus 188 p~i~G~~~~~~---t-~~~~~~l--~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~ 261 (519)
T 3qfa_A 188 LGIPGDKEYCI---S-SDDLFSL--PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME 261 (519)
T ss_dssp CCCTTHHHHCB---C-HHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCccCceE---c-HHHHhhh--hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHH
Confidence 99999654321 1 1111111 13467899999999999999999999999999998633222 3444556678
Q ss_pred CCCeEEEeCceEEEEeeCCCC--ceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceecc-CCCCEEeCCC
Q 009224 288 NPNITVHFNTETVDVVSNTKG--QMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELD-SSGYVIVEEG 361 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~-~~g~i~vd~~ 361 (540)
+.||++++++.+.++....++ ....+.+...+.+....+++|.|++|+|++|+++++ ..+++++ ++|+|.||++
T Consensus 262 ~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~ 341 (519)
T 3qfa_A 262 EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE 341 (519)
T ss_dssp HTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTT
T ss_pred HCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCC
Confidence 899999999988888764321 112244433222233578999999999999999864 2368888 6899999999
Q ss_pred ccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc----Cc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 362 TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 362 ~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+ +|+.|||||+|||+...+..+..|..||+.||.+|...-.. .. ....|+.|+++. ||++|+++++.
T Consensus 342 ~-~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 413 (519)
T 3qfa_A 342 E-QTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGA--CGLSEEKAVEK 413 (519)
T ss_dssp S-BCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEE--EECCHHHHHHH
T ss_pred C-ccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEE--ecCCHHHHHhh
Confidence 8 89999999999999443578899999999999998632111 11 125689999999 99999988764
No 35
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=100.00 E-value=1e-36 Score=318.53 Aligned_cols=318 Identities=20% Similarity=0.279 Sum_probs=229.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------C----ccccCC--CCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------T----EVENFP--GFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~----~~~~~~--~~~---~~~~ 153 (540)
.+||+|||||+||++||..|++.|++|+|||+.. +||.+... . ....++ +++ ....
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~----~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 83 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA----YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVN 83 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC----SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC----CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccC
Confidence 4899999999999999999999999999999965 55544210 0 011111 111 1134
Q ss_pred hHHHHHHHHHHHHH-----------h-CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 154 GPDLMDRMRRQAER-----------W-GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 154 ~~~~~~~~~~~~~~-----------~-~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
..++.+++.....+ . +++++.+++...+ .+.+.+. ++..+.||+||||||++|..|++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--~~~v~~~-~~~~~~~d~lViATGs~p~~p~~~~~~~-- 158 (492)
T 3ic9_A 84 GKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--EHTLQVD-DHSQVIAKRIVIATGSRPNYPEFLAAAG-- 158 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--TTEEEET-TTEEEEEEEEEECCCEECCCCHHHHTTG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--CCEEEEc-CCcEEEeCEEEEccCCCCcCCCCCCccC--
Confidence 44554444333222 1 3445666555444 2333332 6788999999999999998887655321
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
..+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++. |+++++
T Consensus 159 -~~v~t~~~~~~~--~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~ 234 (492)
T 3ic9_A 159 -SRLLTNDNLFEL--NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAK 234 (492)
T ss_dssp -GGEECHHHHTTC--SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETT
T ss_pred -CcEEcHHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEEC
Confidence 122222222222 13589999999999999999999999999999999988755 344455566767 999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeC-CCccccCCCceEE
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVE-EGTAKTSVEGVFA 372 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd-~~~~~t~~~~iya 372 (540)
+.+.++..++++ +. +.+.+ .+|+..++++|.||+|+|++|++.++. .+++++++|++.|| +++ +|+.|+|||
T Consensus 235 ~~v~~i~~~~~~-v~-v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~-~t~~~~IyA 310 (492)
T 3ic9_A 235 ARVISTIEKEDA-VE-VIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTL-QTSVDHIFV 310 (492)
T ss_dssp CEEEEEEECSSS-EE-EEEEC-TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTC-BCSSTTEEE
T ss_pred CEEEEEEEcCCE-EE-EEEEe-CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccc-cCCCCCEEE
Confidence 999999876542 22 33322 245557899999999999999999742 36888999999999 777 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc------ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN------LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|||++.+ .....|..||+.||.+|..+..... ....|+.|++++ ||++++++++.
T Consensus 311 ~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 372 (492)
T 3ic9_A 311 AGDANNTL-TLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVAS--VGLSLRQIEDL 372 (492)
T ss_dssp CGGGGTSS-CSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEE--EESCHHHHHHH
T ss_pred EEecCCCC-ccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEE--ecCCHHHHHhc
Confidence 99999874 6888999999999999987432221 125689999999 99999988765
No 36
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=100.00 E-value=4.6e-37 Score=321.15 Aligned_cols=317 Identities=20% Similarity=0.230 Sum_probs=232.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHH-cCCceEEEc--------CCCCCCCCcceeeccCc-----------c----ccC--C
Q 009224 93 SVENVVIIGSGPAGYTAAIYAAR-ANLKPVVFE--------GYQAGGVPGGQLMTTTE-----------V----ENF--P 146 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~-~g~~v~lie--------~~~~~~~~gg~~~~~~~-----------~----~~~--~ 146 (540)
..+||+|||||+||++||..|++ .|++|+||| +... +||.+....- . ... .
T Consensus 6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~---~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~ 82 (495)
T 2wpf_A 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAA---LGGTCVNVGCVPKKLMVTGAQYMDHLRESAGF 82 (495)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCB---TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCC---CCCeeecCCcchHHHHHHHHHHHHHHhHHHhc
Confidence 35899999999999999999999 999999999 2333 5665543110 0 000 1
Q ss_pred CCCC-----CCChHHHHHHH-----------HHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE--C-----CeEEEecEEE
Q 009224 147 GFPD-----GITGPDLMDRM-----------RRQAERW-GAELHQEDVEFIDVKSNPFTVKS--G-----ERKVKCHSIV 202 (540)
Q Consensus 147 ~~~~-----~~~~~~~~~~~-----------~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~--~-----~~~~~~d~lv 202 (540)
++.. .....++.++. ...+++. +++++.++++.++ .+.+.+.. + +..+.||+||
T Consensus 83 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d~lV 160 (495)
T 2wpf_A 83 GWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLES--KNVVVVRETADPKSAVKERLQADHIL 160 (495)
T ss_dssp TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEee--CCEEEEeecCCccCCCCeEEEcCEEE
Confidence 1111 12333433332 2335566 9999999888775 34555541 2 5679999999
Q ss_pred EccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc---CCeEEEEEecccccc--
Q 009224 203 FATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF---ARHVHLLVRREQLRA-- 277 (540)
Q Consensus 203 iAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~---g~~v~li~~~~~~~~-- 277 (540)
||||++|+.|++||.+.. .......... ..+++++|||+|++|+|+|..|++. |.+|+++++.+.+++
T Consensus 161 iATGs~p~~p~i~G~~~~-----~~~~~~~~~~--~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~ 233 (495)
T 2wpf_A 161 LATGSWPQMPAIPGIEHC-----ISSNEAFYLP--EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGF 233 (495)
T ss_dssp ECCCEEECCCCCTTGGGC-----EEHHHHTTCS--SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTS
T ss_pred EeCCCCcCCCCCCCcccc-----ccHHHHHhhh--hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccccc
Confidence 999999999999987421 1111111111 3478999999999999999999999 999999999887654
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceecc
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELD 351 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~ 351 (540)
....+.+.+++.||++++++.+.++..++++. ..+.+ .+| +++++|.||+|+|++|+++++ . .+++++
T Consensus 234 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~---~~G--~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~ 307 (495)
T 2wpf_A 234 DETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTF---ESG--KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLT 307 (495)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEE---TTS--CEEEESEEEECSCEEECCGGGTGGGTTCCBC
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCce-EEEEE---CCC--cEEEcCEEEECCCCcccccccchhhcCccCC
Confidence 24455566788999999999999998765332 22433 223 479999999999999999743 2 368888
Q ss_pred CCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCcc-eeeecCCCccCCCCcCCCC
Q 009224 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNNL-LIEFHQPQAEEPKKDLTDR 426 (540)
Q Consensus 352 ~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~~-~~~~~~~~~~~~~v~~~~~ 426 (540)
++|+|.||+++ +|+.|+|||+|||++. +..+..|..||+.||.+|...- ..... ...|+.|+++. ||++++
T Consensus 308 ~~G~i~Vd~~~-~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~--vGl~e~ 383 (495)
T 2wpf_A 308 PKGGVQVDEFS-RTNVPNIYAIGDITDR-LMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGT--CGLIEE 383 (495)
T ss_dssp TTSSBCCCTTC-BCSSTTEEECGGGGCS-CCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEE--EECCHH
T ss_pred CCCCEEECCCC-ccCCCCEEEEeccCCC-ccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEE--EeCCHH
Confidence 89999999998 8999999999999986 3688999999999999996311 01111 14588999999 999988
Q ss_pred CCCCc
Q 009224 427 DVQEG 431 (540)
Q Consensus 427 ~~~~~ 431 (540)
++++.
T Consensus 384 ~a~~~ 388 (495)
T 2wpf_A 384 VAAKE 388 (495)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87654
No 37
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=3.2e-36 Score=312.45 Aligned_cols=324 Identities=20% Similarity=0.284 Sum_probs=234.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccC--CCCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENF--PGFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~--~~~~---~~~~ 153 (540)
++||+|||||+||++||..|++.|++|+|||+. . .||.+..... ...+ .+++ ....
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~---~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-N---LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTID 78 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C---TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-C---CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence 479999999999999999999999999999997 3 4554321100 0000 0111 0112
Q ss_pred hHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC-C-eEEEecEEEEccCCCCCCCCCCCcccc
Q 009224 154 GPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG-E-RKVKCHSIVFATGATAKRLNLPREDEF 220 (540)
Q Consensus 154 ~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~-~-~~~~~d~lviAtG~~~~~~~ipg~~~~ 220 (540)
... +...+...+++.+++++.+++..++ .+.+.+... + ..+.||+||+|||++|..|+++|.+..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id--~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~ 156 (455)
T 1ebd_A 79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNR 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccce
Confidence 222 2233445667789999999776654 456777653 3 579999999999999998888875431
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEe
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~ 295 (540)
+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++
T Consensus 157 ----v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~ 230 (455)
T 1ebd_A 157 ----ILDSTGALNL--GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVT 230 (455)
T ss_dssp ----EECHHHHHTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred ----EecHHHHhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence 2111111111 12479999999999999999999999999999999887654 234455567888999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++++.++..++++ ..+.+. .++++.++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+|||
T Consensus 231 ~~~v~~i~~~~~~--~~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya 305 (455)
T 1ebd_A 231 NALAKGAEEREDG--VTVTYE--ANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQC-RTSVPNIFA 305 (455)
T ss_dssp SEEEEEEEEETTE--EEEEEE--ETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTC-BCSSTTEEE
T ss_pred CCEEEEEEEeCCe--EEEEEE--eCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCc-ccCCCCEEE
Confidence 9999999876432 123333 23456789999999999999999873 3 36788888999999998 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+|||++.+ .....|..||+.||.+|...-.. .. ....|+.|++++ ||++++++++ .+++...
T Consensus 306 ~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 372 (455)
T 1ebd_A 306 IGDIVPGP-ALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECAS--VGYFEQQAKDEGIDVIAA 372 (455)
T ss_dssp CGGGSSSC-CCHHHHHHHHHHHHHHHTSCCCCCCCSCCCEEECSSSCEEE--EECCHHHHHTTTCCEEEE
T ss_pred EeccCCCc-ccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEE--EeCCHHHHHhcCCCEEEE
Confidence 99999863 67889999999999999742100 11 114488899998 9999988764 3344443
No 38
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=100.00 E-value=1.5e-37 Score=324.79 Aligned_cols=320 Identities=18% Similarity=0.149 Sum_probs=225.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC----------------CCCCcceeeccCccc-------cCCCCC-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA----------------GGVPGGQLMTTTEVE-------NFPGFP- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~----------------~~~~gg~~~~~~~~~-------~~~~~~- 149 (540)
.|||+||||||||+.||.+++++|.+|+|||+... ||.|.+.|....... ...++.
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~ 121 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF 121 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence 48999999999999999999999999999996432 122333332221110 001211
Q ss_pred --CCCChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-----CCeEEEecEEEEccCCCCCC
Q 009224 150 --DGITGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKS-----GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 150 --~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-----~~~~~~~d~lviAtG~~~~~ 211 (540)
....+..+.++ ....+++.+++++.+....++. +.+.|.. +.+.+++|++|||||++|..
T Consensus 122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~--~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~ 199 (542)
T 4b1b_A 122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK--NTVSYYLKGDLSKEETVTGKYILIATGCRPHI 199 (542)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET--TEEEEEEC--CCCEEEEEEEEEEECCCEEECC
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC--CcceEeecccCCceEEEeeeeEEeccCCCCCC
Confidence 01223333322 2234567799999998776663 3444432 34679999999999999988
Q ss_pred CCCCCcc-cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHh
Q 009224 212 LNLPRED-EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~-~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l 286 (540)
|+.++.. ... + .....-. ....|++++|||||++|+|+|..|+++|.+||++.+...++. ....+.+.|
T Consensus 200 P~~~~~~~~~~---~-ts~~~l~--l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l 273 (542)
T 4b1b_A 200 PDDVEGAKELS---I-TSDDIFS--LKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYM 273 (542)
T ss_dssp CSSSBTHHHHC---B-CHHHHTT--CSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHH
T ss_pred CCcccCCCccc---c-Cchhhhc--cccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHH
Confidence 8544332 211 1 1111111 113589999999999999999999999999999988654433 344566678
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~ 363 (540)
++.||+++++..+.++...++ .+.+.. .++..+.+|.|++|+|++||++.+.. ++.++.++++++++.++
T Consensus 274 ~~~gi~~~~~~~v~~~~~~~~----~~~v~~---~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~ 346 (542)
T 4b1b_A 274 EEQGVMFKNGILPKKLTKMDD----KILVEF---SDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLS 346 (542)
T ss_dssp HHTTCEEEETCCEEEEEEETT----EEEEEE---TTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTS
T ss_pred HhhcceeecceEEEEEEecCC----eEEEEE---cCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccc
Confidence 899999999999999988764 244433 23455789999999999999998753 57778777765444444
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCcc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+|+.|+|||+|||++..+...+.|..+|+.++.++...-. .... ...|++|++++ ||++|+++++
T Consensus 347 ~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~--VGlTE~eA~~ 416 (542)
T 4b1b_A 347 CTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGA--CGYSEEKAYE 416 (542)
T ss_dssp BCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEE--EECCHHHHHH
T ss_pred cccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEE--EeCCHHHHHH
Confidence 9999999999999976446889999999999999864221 1112 26699999999 9999998875
No 39
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=100.00 E-value=3.9e-36 Score=312.56 Aligned_cols=324 Identities=19% Similarity=0.229 Sum_probs=234.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cc-cC--CCCC--CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VE-NF--PGFP--DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~-~~--~~~~--~~~~ 153 (540)
.+||+|||||+||+++|..|++.|++|+|||+.. .||.+..... .. .. .+++ ....
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~----~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY----WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFD 78 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC----CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence 3799999999999999999999999999999973 4444321100 00 00 0111 0011
Q ss_pred hHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccc
Q 009224 154 GPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 154 ~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
... +...+.+.+++.+++++.+++..+ +.+.+.+.. ++ ..+.||+||+|||+.|+.|+++|.+.
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~i--d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~ 156 (464)
T 2a8x_A 79 YGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFA--DANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSA 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEES--SSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCc
Confidence 222 222345566778999999876543 455677765 34 68999999999999998888888543
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEE
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVH 294 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~ 294 (540)
. +.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||+++
T Consensus 157 ~----~~~~~~~~~~~--~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 157 N----VVTYEEQILSR--ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp T----EECHHHHHTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred e----EEecHHHhhcc--ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEE
Confidence 1 21111111111 2479999999999999999999999999999999987754 33445566788899999
Q ss_pred eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceE
Q 009224 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 295 ~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++++.++..++++ + .+.+. .+|+.+++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+||
T Consensus 231 ~~~~v~~i~~~~~~-~-~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~~~~Iy 305 (464)
T 2a8x_A 231 TATKVESIADGGSQ-V-TVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYM-RTNVGHIY 305 (464)
T ss_dssp CSCEEEEEEECSSC-E-EEEEE--SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTS-BCSSTTEE
T ss_pred eCcEEEEEEEcCCe-E-EEEEE--cCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCC-ccCCCCEE
Confidence 99999999876532 2 23332 23555789999999999999999874 3 36788888999999998 79999999
Q ss_pred EccccCCCcchhhhhhhchHHHHHHHHHH-HHhc----Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 372 AAGDVQDHEWRQAVTAAGSGCIAALSVER-YLVN----NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 372 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~-~l~~----~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|+|||++.+ .....|..||+.||.+|.. .-.. .. ....|+.|++++ ||+++.++++ .+++...
T Consensus 306 A~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 375 (464)
T 2a8x_A 306 AIGDVNGLL-QLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVAS--FGLTEQQARNEGYDVVVA 375 (464)
T ss_dssp ECGGGGCSS-CSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred EeECcCCCc-cCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEE--EcCCHHHHHhcCCCEEEE
Confidence 999999863 6788999999999999974 1111 11 114588899999 9999887764 3344443
No 40
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=100.00 E-value=2.8e-36 Score=314.98 Aligned_cols=316 Identities=21% Similarity=0.253 Sum_probs=232.2
Q ss_pred cccEEEECCCHHHHHHHHHHHH-cCCceEEEcC--------CCCCCCCcceeeccC-----------cc----ccC--CC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR-ANLKPVVFEG--------YQAGGVPGGQLMTTT-----------EV----ENF--PG 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~-~g~~v~lie~--------~~~~~~~gg~~~~~~-----------~~----~~~--~~ 147 (540)
.+||+|||||+||++||.+|++ .|++|+|||+ ... +||.+.... .. ... .+
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~---~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 79 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAA---LGGTCVNVGCVPKKLMVTGANYMDTIRESAGFG 79 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSC---TTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCC---cCccccCCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999 9999999992 333 566543210 00 000 01
Q ss_pred CCC-----CCChHHHHH-----------HHHHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE----CC---eEEEecEEEE
Q 009224 148 FPD-----GITGPDLMD-----------RMRRQAERW-GAELHQEDVEFIDVKSNPFTVKS----GE---RKVKCHSIVF 203 (540)
Q Consensus 148 ~~~-----~~~~~~~~~-----------~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~----~~---~~~~~d~lvi 203 (540)
+.. .....++.+ .+...+++. +++++.++++.++ .+.+.+.. ++ ..+.||+|||
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~--~~~v~v~~~~~~~g~~~~~~~~d~lvi 157 (490)
T 1fec_A 80 WELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQD--NHTVLVRESADPNSAVLETLDTEYILL 157 (490)
T ss_dssp EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEEE
T ss_pred cccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEee--CCEEEEEeeccCCCCceEEEEcCEEEE
Confidence 110 123333332 233445567 9999999888776 35666653 45 6899999999
Q ss_pred ccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc---CCeEEEEEecccccc---
Q 009224 204 ATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF---ARHVHLLVRREQLRA--- 277 (540)
Q Consensus 204 AtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~---g~~v~li~~~~~~~~--- 277 (540)
|||++|..|++||.+... ........ ...+++++|||+|++|+|+|..|.+. |.+|+++++.+.+++
T Consensus 158 AtGs~p~~p~i~g~~~~~-----~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 230 (490)
T 1fec_A 158 ATGSWPQHLGIEGDDLCI-----TSNEAFYL--DEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD 230 (490)
T ss_dssp CCCEEECCCCSBTGGGCB-----CHHHHTTC--SSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSC
T ss_pred eCCCCCCCCCCCCcccee-----cHHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccC
Confidence 999999999999874311 11111111 13478999999999999999999999 999999999987654
Q ss_pred --cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccC
Q 009224 278 --SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDS 352 (540)
Q Consensus 278 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~ 352 (540)
....+.+.+++.||++++++.+.++..++++. ..+.+ .+| +++++|.||+|+|++|++..+ . .++++++
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~---~~G--~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~ 304 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVF---ESG--AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAK 304 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEE---TTS--CEEEESEEEECSCEEESCTTSCGGGGTCCBCT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEE---CCC--cEEEcCEEEEccCCCcCccccCchhcCccCCC
Confidence 24455566788999999999999998765432 22333 223 469999999999999999743 3 3688888
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCC
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRD 427 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~ 427 (540)
+|+|.||+++ +|+.|+|||+|||++. +..+..|..||+.||.+|...- .... ....|+.|+++. ||+++++
T Consensus 305 ~G~I~Vd~~~-~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~ 380 (490)
T 1fec_A 305 NGAIKVDAYS-KTNVDNIYAIGDVTDR-VMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGV--CGYVEED 380 (490)
T ss_dssp TSCBCCCTTC-BCSSTTEEECGGGGCS-CCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEE--EECCHHH
T ss_pred CCCEEECCCC-ccCCCCEEEEeccCCC-ccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEE--EeCCHHH
Confidence 9999999998 8999999999999986 3688999999999999996411 0111 124588999999 9999988
Q ss_pred CCCc
Q 009224 428 VQEG 431 (540)
Q Consensus 428 ~~~~ 431 (540)
+++.
T Consensus 381 a~~~ 384 (490)
T 1fec_A 381 AAKK 384 (490)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 41
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-36 Score=315.94 Aligned_cols=318 Identities=19% Similarity=0.237 Sum_probs=232.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------Cc----ccc--CCCCC------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TE----VEN--FPGFP------ 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~~----~~~--~~~~~------ 149 (540)
..+||+|||||+||+++|..|++.|++|+|||+.. .||.+... .. ... ..++.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 85 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA----LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLD 85 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC----cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccc
Confidence 35899999999999999999999999999999974 45544311 00 000 01111
Q ss_pred ---CCCChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCe--EEEecEEEEccCCCCCCC
Q 009224 150 ---DGITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GER--KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 150 ---~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~~~ 212 (540)
.......+. ..+...+++.+++++.+++..++ .+.+.+.. ++. .+.||+||+|||+.|..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p 163 (479)
T 2hqm_A 86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNK--DGNVEVQKRDNTTEVYSANHILVATGGKAIFP 163 (479)
T ss_dssp GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECT--TSCEEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEee--CCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence 112233222 22334566789999999877664 44566654 344 799999999999999998
Q ss_pred -CCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 213 -NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 213 -~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
++||.+... ....... . ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+
T Consensus 164 ~~i~g~~~~~----~~~~~~~-l--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 236 (479)
T 2hqm_A 164 ENIPGFELGT----DSDGFFR-L--EEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHY 236 (479)
T ss_dssp TTSTTGGGSB----CHHHHHH-C--SSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred CCCCCccccc----chHHHhc-c--cccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHH
Confidence 899874311 1001111 1 13579999999999999999999999999999999887654 334455667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc-cc-cceeccCCCCEEeCCCccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL-LQ-GQVELDSSGYVIVEEGTAK 364 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~-~~-~~~~~~~~g~i~vd~~~~~ 364 (540)
++.||++++++++.++..++++.+..+.+ .+|+ +++++|.||+|+|++|++.+ +. .+++++++|+|.||+++ +
T Consensus 237 ~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~---~~G~-~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~-~ 311 (479)
T 2hqm_A 237 VKEGINVHKLSKIVKVEKNVETDKLKIHM---NDSK-SIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQ-N 311 (479)
T ss_dssp HHHTCEEECSCCEEEEEECC-CCCEEEEE---TTSC-EEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTC-B
T ss_pred HhCCeEEEeCCEEEEEEEcCCCcEEEEEE---CCCc-EEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCC-c
Confidence 88899999999999998765442233443 2332 67999999999999999965 33 36888889999999998 8
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH---hc----Ccce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL---VN----NNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l---~~----~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+.|+|||+|||++.+ ..+..|..||+.||.+|.... .. ...+ ..|+.|+++. +|++++++++.
T Consensus 312 t~~~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~--vGl~e~~a~~~ 383 (479)
T 2hqm_A 312 TNVPNIYSLGDVVGKV-ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGS--IGISEKEAIEK 383 (479)
T ss_dssp CSSTTEEECGGGTTSS-CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred cCCCCEEEEEecCCCc-ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEE--EeCCHHHHHhc
Confidence 9999999999998763 688899999999999997422 11 1122 4588999999 99998877643
No 42
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=100.00 E-value=8.2e-37 Score=315.94 Aligned_cols=314 Identities=20% Similarity=0.280 Sum_probs=229.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------Cc----cc-cC--CCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TE----VE-NF--PGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~~----~~-~~--~~~~---~~ 151 (540)
..+||+|||||+||+++|..|++.|++|+|||+.. .||.+... .. .. .. .+++ ..
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE----LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC----CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 35899999999999999999999999999999974 45544211 00 00 00 0110 01
Q ss_pred CChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc
Q 009224 152 ITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF 220 (540)
Q Consensus 152 ~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~ 220 (540)
.....+.. .+...+++.+++++.++++.++. +.+.+ ++..+.||+||+|||++|..|++||.+..
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~--~g~~~~~d~lviAtGs~p~~p~i~g~~~~ 154 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV--NGETITADHILIATGGRPSHPDIPGVEYG 154 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE--TTEEEEEEEEEECCCEEECCCCSTTGGGS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE--CCEEEEeCEEEECCCCCCCCCCCCCccce
Confidence 22222222 23344567899999998877763 44444 67889999999999999999999987431
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEe
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~ 295 (540)
.. .... .. . ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++
T Consensus 155 ~~--~~~~--~~-~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 227 (450)
T 1ges_A 155 ID--SDGF--FA-L--PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHT 227 (450)
T ss_dssp BC--HHHH--HH-C--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEEC
T ss_pred ec--HHHh--hh-h--hhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEe
Confidence 11 1111 11 1 12478999999999999999999999999999999877554 334455667788999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++.+.++..++++.+ .+.+ .+| +++++|.||+|+|++|+++.+ . .+++++++|+|.||+++ +|+.|+|||
T Consensus 228 ~~~v~~i~~~~~~~~-~v~~---~~g--~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA 300 (450)
T 1ges_A 228 NAIPKAVVKNTDGSL-TLEL---EDG--RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYA 300 (450)
T ss_dssp SCCEEEEEECTTSCE-EEEE---TTS--CEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEE
T ss_pred CCEEEEEEEeCCcEE-EEEE---CCC--cEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC-ccCCCCEEE
Confidence 999999987654321 2333 223 469999999999999999743 2 36888889999999998 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHhc-----Ccce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLVN-----NNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~-----~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|||++. +..+..|..||+.||.+|...-.. ...+ ..|+.|+++. ||++++++.+.
T Consensus 301 ~GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~ 362 (450)
T 1ges_A 301 VGDNTGA-VELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGT--VGLTEPQAREQ 362 (450)
T ss_dssp CSGGGTS-CCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred EeccCCC-CccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEE--EeCCHHHHHhc
Confidence 9999986 368889999999999999742111 1112 4588999999 99998887654
No 43
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=100.00 E-value=2.5e-36 Score=313.27 Aligned_cols=314 Identities=20% Similarity=0.297 Sum_probs=229.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------c----ccc--CCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------E----VEN--FPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~----~~~--~~~~~---~~~ 152 (540)
+.+||+|||||+||+++|.+|++.|++|+|||+.. .||.+.... . ... ..++. ...
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA----LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC----CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 35899999999999999999999999999999974 555543210 0 000 01111 122
Q ss_pred ChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 153 TGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 153 ~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
....+..+ +...+++.+++++.+++..++ .+.+.+ ++..+.||+||+|||++|..|++||.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~--~g~~~~~d~lviAtGs~p~~p~i~G~~~~~ 154 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVD--AHTIEV--EGQRLSADHIVIATGGRPIVPRLPGAELGI 154 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE--TTEEEE--TTEEEEEEEEEECCCEEECCCSCTTGGGSB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEcc--CCEEEE--CCEEEEcCEEEECCCCCCCCCCCCCcccee
Confidence 33333322 234456779999999887765 344444 677899999999999999999999874211
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
....... .. ..+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||+++++
T Consensus 155 ----~~~~~~~-~~--~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~ 227 (463)
T 2r9z_A 155 ----TSDGFFA-LQ--QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLE 227 (463)
T ss_dssp ----CHHHHHH-CS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESS
T ss_pred ----cHHHHhh-hh--ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeC
Confidence 1111111 11 2478999999999999999999999999999999877544 2344556678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+++.++..++++ ..+.+ .+|+. ++++|.||+|+|++|+++.+ . .+++++++|+|.||+++ +|+.|+|||+
T Consensus 228 ~~v~~i~~~~~~--~~v~~---~~G~~-~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~ 300 (463)
T 2r9z_A 228 FAVAALERDAQG--TTLVA---QDGTR-LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ-NTNVPGVYAL 300 (463)
T ss_dssp CCEEEEEEETTE--EEEEE---TTCCE-EEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTS-BCSSTTEEEC
T ss_pred CEEEEEEEeCCe--EEEEE---eCCcE-EEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCC-ccCCCCEEEE
Confidence 999999876432 22333 23332 79999999999999999743 2 36888889999999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHH-----hcCcce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYL-----VNNNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l-----~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|||++. +.....|..||+.||.+|...- .....+ ..|+.|+++. +|++++++.+.
T Consensus 301 GD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~--vGl~e~~a~~~ 361 (463)
T 2r9z_A 301 GDITGR-DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSK--VGLSEPEARER 361 (463)
T ss_dssp GGGGTS-CCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred eecCCC-cccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEE--EcCCHHHHHhc
Confidence 999986 3678899999999999986311 111111 4588899999 99998877653
No 44
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=100.00 E-value=6e-36 Score=300.59 Aligned_cols=292 Identities=16% Similarity=0.287 Sum_probs=219.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec---------cCccccCCCCC------CCCChHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT---------TTEVENFPGFP------DGITGPDLM 158 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~---------~~~~~~~~~~~------~~~~~~~~~ 158 (540)
++||+|||||++|+++|..|+++|++|+|+|+.+. +||.|.. ......+++++ .+....++.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS---PGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL 79 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSS---SSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC---CCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence 47999999999999999999999999999999876 6666543 11222233322 123347888
Q ss_pred HHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCC--CCCCCCCCCcccccCCCeeeeeecCCC
Q 009224 159 DRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGA--TAKRLNLPREDEFWSRGISACAICDGA 234 (540)
Q Consensus 159 ~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~--~~~~~~ipg~~~~~~~~~~~~~~~~~~ 234 (540)
+++.+.+++++++++.+ +|+.++.+++.|. +..+...+.||+||+|||. .|..|.+||.+.+....++...+...
T Consensus 80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 158 (357)
T 4a9w_A 80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP- 158 (357)
T ss_dssp HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCS-
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCCh-
Confidence 99999999999999887 9999999999988 8876668999999999995 67778999987765544444443332
Q ss_pred CCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEec-cccccc----HHH---HHHHhc-------------------
Q 009224 235 SPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRR-EQLRAS----RAM---QDRVFN------------------- 287 (540)
Q Consensus 235 ~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~-~~~~~~----~~~---~~~~l~------------------- 287 (540)
....+++|+|||+|.+|+|+|..|++.+ +|+++.++ +.+.+. ... ..+.+.
T Consensus 159 -~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T 4a9w_A 159 -APFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIV 236 (357)
T ss_dssp -GGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBC
T ss_pred -hhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcc
Confidence 2357899999999999999999999998 69999987 344331 011 111111
Q ss_pred ---------CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEE
Q 009224 288 ---------NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVI 357 (540)
Q Consensus 288 ---------~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~ 357 (540)
+.|+ +.....+.++..+ ++.+ .+++++++|.||+|+|++|+++++.. ++. +++|++.
T Consensus 237 ~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~-----~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~-~~~G~i~ 303 (357)
T 4a9w_A 237 MVPPVLDARARGV-LAAVPPPARFSPT------GMQW-----ADGTERAFDAVIWCTGFRPALSHLKGLDLV-TPQGQVE 303 (357)
T ss_dssp CCHHHHHHHHTTC-CCEECCCSEEETT------EEEC-----TTSCEEECSEEEECCCBCCCCGGGTTTTCB-CTTSCBC
T ss_pred cChhHHHHHhcCc-eEEecCcceEeCC------eeEE-----CCCCEecCCEEEECCCcCCCCcccCccccc-CCCCCcc
Confidence 1222 3333444444432 2333 23467999999999999999888865 666 8889999
Q ss_pred eCCC-ccccCCCceEEcc--ccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 358 VEEG-TAKTSVEGVFAAG--DVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 358 vd~~-~~~t~~~~iya~G--D~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
+|++ +++|+.|||||+| ||+++..+.+..|+.+|+.+|.+|.++|.+
T Consensus 304 vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 304 VDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp BCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred ccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999 4499999999999 777755688899999999999999999987
No 45
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-37 Score=320.88 Aligned_cols=314 Identities=21% Similarity=0.288 Sum_probs=223.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCC-CCCCChHHHHHHHHHHH-HHhC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-PDGITGPDLMDRMRRQA-ERWG 169 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 169 (540)
++||+|||||+||+++|..|++. |++|+|||+.+. .+.... .+|.+ .......++..+..+.+ ++.+
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~---~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~~~g 73 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW---VSHAPC------GIPYVVEGLSTPDKLMYYPPEVFIKKRG 73 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSC---CC------------------------------CTHHHHTT
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCc---cccCCc------CCccccCCCCCHHHhhhcCHHHHHHhcC
Confidence 47999999999999999999998 889999999775 221110 00111 01112233444343444 6889
Q ss_pred CEEEEe-eEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCCCCCCCccc---ccCCCeeeeeecCCCCCCCCCCEE
Q 009224 170 AELHQE-DVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKRLNLPREDE---FWSRGISACAICDGASPLFKGQVL 243 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~~~ipg~~~---~~~~~~~~~~~~~~~~~~~~~k~v 243 (540)
++++.+ +|+.++... +.+.. ++ ..+.||+||+|||+.|+.|++||.+. +...................++++
T Consensus 74 i~v~~~~~v~~i~~~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v 151 (449)
T 3kd9_A 74 IDLHLNAEVIEVDTGY--VRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENV 151 (449)
T ss_dssp CEEETTCEEEEECSSE--EEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEE
T ss_pred cEEEecCEEEEEecCC--CEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeE
Confidence 999998 898887654 34443 33 47999999999999999999998753 111111111111111111367899
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEE
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK 317 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~ 317 (540)
+|||+|++|+|+|..|++.|.+|+++++.+++++ ....+.+.+++. |++++++.+.++..++ ++..+ +.
T Consensus 152 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v-~~- 226 (449)
T 3kd9_A 152 VIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE--RVEKV-VT- 226 (449)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS--SCCEE-EE-
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC--cEEEE-Ee-
Confidence 9999999999999999999999999999887654 244555667778 9999999999998764 23322 21
Q ss_pred ccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhh
Q 009224 318 VDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTA 387 (540)
Q Consensus 318 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A 387 (540)
++.++++|.||+|+|++|+++++.. +++++++|+|.||+++ +|+.|+|||+|||+..+ +..+..|
T Consensus 227 ----~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A 301 (449)
T 3kd9_A 227 ----DAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKM-QTSVENVYAAGDVAETRHVITGRRVWVPLAPAG 301 (449)
T ss_dssp ----TTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTC-BCSSTTEEECSTTBCEEBTTTCSEECCCCHHHH
T ss_pred ----CCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCC-ccCCCCEEEeeeeeeeccccCCceEEeccHHHH
Confidence 2357999999999999999988754 7888999999999998 89999999999998521 3577899
Q ss_pred hchHHHHHHHHHHHHhcC-c---c-eeeecCCCccCCCCcCCCCCCCC
Q 009224 388 AGSGCIAALSVERYLVNN-N---L-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 388 ~~~g~~aa~~i~~~l~~~-~---~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
..||+.||.+|...-... . . ...|+.|+++. ||++|+++++
T Consensus 302 ~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~e~~a~~ 347 (449)
T 3kd9_A 302 NKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGK--TGLTEMEALK 347 (449)
T ss_dssp HHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEE--ecCCHHHHHH
Confidence 999999999986321111 1 1 14588999999 9999887764
No 46
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=8e-36 Score=312.51 Aligned_cols=315 Identities=20% Similarity=0.272 Sum_probs=220.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------c----cc--cCCCCC--CCCCh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------E----VE--NFPGFP--DGITG 154 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~----~~--~~~~~~--~~~~~ 154 (540)
.+||+|||||+||++||..|++.|++|+|||+.. .||.+.... . .. ...++. .....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR----LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNL 77 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS----TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC----cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCH
Confidence 3799999999999999999999999999999975 455443210 0 00 001211 12233
Q ss_pred HHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE------------CCeEEEecEEEEccCCCCCC
Q 009224 155 PDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS------------GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 155 ~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~------------~~~~~~~d~lviAtG~~~~~ 211 (540)
..+. ..+...+++.+++++.+++..++. +.+.+.. ++..+.||+||+|||++|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~ 155 (500)
T 1onf_A 78 PLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF 155 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence 3322 223445677899999987766653 4455532 14678999999999999999
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
|++||.+.. .......... .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+
T Consensus 156 p~i~G~~~~-----~~~~~~~~~~---~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 227 (500)
T 1onf_A 156 PPVKGIENT-----ISSDEFFNIK---ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDM 227 (500)
T ss_dssp CSCTTGGGC-----EEHHHHTTCC---CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCcc-----cCHHHHhccC---CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHH
Confidence 999987421 1111111111 289999999999999999999999999999999887654 344556667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~ 363 (540)
++.||++++++.+.++..++++. ..+.+ .+|+. .+++|.||+|+|++|+++.+ . .++++ ++|+|.||+++
T Consensus 228 ~~~gv~i~~~~~v~~i~~~~~~~-~~v~~---~~g~~-~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~- 300 (500)
T 1onf_A 228 KKNNINIVTFADVVEIKKVSDKN-LSIHL---SDGRI-YEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQ- 300 (500)
T ss_dssp HHTTCEEECSCCEEEEEESSTTC-EEEEE---TTSCE-EEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTC-
T ss_pred HhCCCEEEECCEEEEEEEcCCce-EEEEE---CCCcE-EEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCc-
Confidence 88999999999999998764332 12333 23332 38999999999999999633 3 36777 78999999998
Q ss_pred ccCCCceEEccccCC---------------------------------CcchhhhhhhchHHHHHHHHHHHHh----cCc
Q 009224 364 KTSVEGVFAAGDVQD---------------------------------HEWRQAVTAAGSGCIAALSVERYLV----NNN 406 (540)
Q Consensus 364 ~t~~~~iya~GD~~~---------------------------------~~~~~~~~A~~~g~~aa~~i~~~l~----~~~ 406 (540)
+|+.|+|||+|||+. ..+..+..|..||+.||.+|...-. ...
T Consensus 301 ~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~ 380 (500)
T 1onf_A 301 RTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKL 380 (500)
T ss_dssp BCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSS
T ss_pred ccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCC
Confidence 799999999999991 2246788999999999999974110 111
Q ss_pred -ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 407 -LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 407 -~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
....|+.|++++ +|++++++.+.
T Consensus 381 ~p~~~~~~~~~a~--vGl~e~~a~~~ 404 (500)
T 1onf_A 381 IPTVIFSHPPIGT--IGLSEEAAIQI 404 (500)
T ss_dssp CCEEECCSSCEEE--EECCHHHHHHH
T ss_pred CCeEEEcCcceEE--EeCCHHHHHhc
Confidence 124588899999 99998877653
No 47
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=100.00 E-value=7.8e-37 Score=319.59 Aligned_cols=318 Identities=20% Similarity=0.225 Sum_probs=230.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC---CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN---LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g---~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.+||+|||||+||+++|..|++.| ++|+|||+++..++.+..+.. ...+.. ....++.....+.+++.++
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~gv 107 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGMAL-----WIGEQI--AGPEGLFYSDKEELESLGA 107 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBCGGGHHH-----HHTTSS--SCSGGGBSCCHHHHHHTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCccccccch-----hhcCcc--CCHHHhhhcCHHHHHhCCC
Confidence 489999999999999999999988 999999997753222211100 000000 0111222223455677899
Q ss_pred EEEEe-eEEEEEeeCCcEEEE-EC-CeEEEecEEEEccCCCCCCCCCCCcc------ccc--CCCeeeeeecCC------
Q 009224 171 ELHQE-DVEFIDVKSNPFTVK-SG-ERKVKCHSIVFATGATAKRLNLPRED------EFW--SRGISACAICDG------ 233 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~-~~-~~~~~~d~lviAtG~~~~~~~ipg~~------~~~--~~~~~~~~~~~~------ 233 (540)
+++.+ +|+.++.+++.+.+. .+ +..+.||+||+|||++|..|++||.+ .|. ...+..+.....
T Consensus 108 ~v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~ 187 (490)
T 2bc0_A 108 KVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIA 187 (490)
T ss_dssp EEETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEECCCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHHH
T ss_pred EEEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCcCCCCCCCccccccccccccccCCEEEeCCHHHHHHHHH
Confidence 99776 699999888888876 22 35799999999999999999999876 221 122322111100
Q ss_pred CCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCC
Q 009224 234 ASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTK 307 (540)
Q Consensus 234 ~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 307 (540)
......+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ..+.+.+.+++.||++++++++.++..+
T Consensus 188 ~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-- 265 (490)
T 2bc0_A 188 KLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGN-- 265 (490)
T ss_dssp HTTSTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEETCCEEEEECS--
T ss_pred HhhhcCCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEEeCCEEEEEEcC--
Confidence 00114689999999999999999999999999999999987654 3345566688899999999999999863
Q ss_pred CceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc-------
Q 009224 308 GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE------- 380 (540)
Q Consensus 308 g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~------- 380 (540)
+++..+.+ ++ .++++|.||+|+|++|+++++...++++++|+|.||+++ +|+.|+|||+|||+..+
T Consensus 266 ~~v~~v~~----~g--~~i~~D~Vi~a~G~~p~~~ll~~~l~~~~~G~I~Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~ 338 (490)
T 2bc0_A 266 GKVEKIIT----DK--NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQ-ETSIPGVYAIGDCATIYDNATRDT 338 (490)
T ss_dssp SSCCEEEE----SS--CEEECSEEEECCCEEECCGGGTTCSCBCTTSCBCCCTTC-BCSSTTEEECGGGBCEEETTTTEE
T ss_pred CcEEEEEE----CC--cEEECCEEEECCCCCcChHHHHhhhccCCCCCEEECCCc-ccCCCCEEEeeeeEEeccccCCce
Confidence 33433443 22 469999999999999999987655777889999999998 89999999999999742
Q ss_pred --chhhhhhhchHHHHHHHHHHHHhc-Cc---c-eeeecCCCccCCCCcCCCCCCC
Q 009224 381 --WRQAVTAAGSGCIAALSVERYLVN-NN---L-LIEFHQPQAEEPKKDLTDRDVQ 429 (540)
Q Consensus 381 --~~~~~~A~~~g~~aa~~i~~~l~~-~~---~-~~~~~~~~~~~~~v~~~~~~~~ 429 (540)
+..+..|..||+.||.+|...-.. .. . ...+..|+++. +|+++.+++
T Consensus 339 ~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~a~ 392 (490)
T 2bc0_A 339 NYIALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLHMVS--TGLTLEKAK 392 (490)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHH
T ss_pred eecccHHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCcEeEE--eeCCHHHHH
Confidence 256889999999999999642110 11 1 12344677877 888876654
No 48
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.4e-36 Score=312.73 Aligned_cols=315 Identities=19% Similarity=0.256 Sum_probs=232.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccCC--CCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENFP--GFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~~--~~~---~~~~ 153 (540)
.+||+|||||++|+++|..|+++|++|+|||+. . +||.+..... ...++ ++. ....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-~---~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-R---YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFD 80 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-C---TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-C---CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcC
Confidence 589999999999999999999999999999994 3 6665432100 00011 110 1122
Q ss_pred hHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC-CCCCCCccccc
Q 009224 154 GPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK-RLNLPREDEFW 221 (540)
Q Consensus 154 ~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~-~~~ipg~~~~~ 221 (540)
+.. +...+...+++.+++++.+++..++ .+.+.+..++..+.||+||+|||+.|. .|.+||.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~ 158 (463)
T 4dna_A 81 WAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCI 158 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccc
Confidence 222 2333445566779999999877765 233333126788999999999999999 99999976321
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
........ ...+++++|||+|++|+|+|..+.+.|.+|+++.+.+.+.+ ....+.+.+++.||+++++
T Consensus 159 -----~~~~~~~~--~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 231 (463)
T 4dna_A 159 -----TSNEAFDL--PALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCE 231 (463)
T ss_dssp -----CHHHHTTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECS
T ss_pred -----cHHHHhhh--hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECC
Confidence 11111111 13589999999999999999999999999999999887654 2445556678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..++++. +.+.... +++ +++|.||+|+|++|++.++ ..+++++++|++.||+++ +|+.|||||+
T Consensus 232 ~~v~~i~~~~~~~---~~v~~~~--~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~iya~ 304 (463)
T 4dna_A 232 DIIQSVSADADGR---RVATTMK--HGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFS-RTSTPGIYAL 304 (463)
T ss_dssp CCEEEEEECTTSC---EEEEESS--SCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTC-BCSSTTEEEC
T ss_pred CEEEEEEEcCCCE---EEEEEcC--CCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCC-CCCCCCEEEE
Confidence 9999998875542 2222022 234 9999999999999999864 247888999999999998 7999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|||++. ++.+..|..||+.||.+|...... ... ...|+.|++++ ||++|+++++.
T Consensus 305 GD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vG~te~~a~~~ 364 (463)
T 4dna_A 305 GDVTDR-VQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGT--VGITEEEAARK 364 (463)
T ss_dssp SGGGSS-CCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEE--EECCHHHHHHH
T ss_pred EecCCC-CCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEE--ecCCHHHHHHc
Confidence 999986 478899999999999999742111 111 25588899999 99999988753
No 49
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=100.00 E-value=4e-37 Score=328.40 Aligned_cols=322 Identities=18% Similarity=0.219 Sum_probs=232.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
|+||+|||||+||++||..|+++ +++|+|||+.+..++....+. ....+.. ......+..+...+.++++++
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~i~ 74 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLP-----YHISGEI-AQRSALVLQTPESFKARFNVE 74 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHH-----HHHTSSS-CCGGGGBCCCHHHHHHHHCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCch-----HHhcCCc-CChHHhhccCHHHHHHhcCcE
Confidence 36899999999999999999998 899999999876322111110 0001110 011122334455556678999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE--CC--eEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC---CCCCCCEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS--GE--RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS---PLFKGQVL 243 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~---~~~~~k~v 243 (540)
++.+ +|+.++.+++.+.+.. ++ ..+.||+||+|||++|+.|++||.+................. ....++++
T Consensus 75 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~v 154 (565)
T 3ntd_A 75 VRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHA 154 (565)
T ss_dssp EETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEE
T ss_pred EEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEE
Confidence 8765 8999999999888875 12 378999999999999999999997542211111111111000 11357899
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeC-------------
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSN------------- 305 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~------------- 305 (540)
+|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+
T Consensus 155 vViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~ 234 (565)
T 3ntd_A 155 TVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGED 234 (565)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCC
T ss_pred EEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccc
Confidence 9999999999999999999999999999987655 3345556678899999999999999873
Q ss_pred -----CCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCC-
Q 009224 306 -----TKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD- 378 (540)
Q Consensus 306 -----~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~- 378 (540)
.++. +.+.. . +++++++|.||+|+|++|++.++.. +++++++|+|.||+++ +|+.|||||+|||+.
T Consensus 235 ~~~~~~~~~---~~v~~-~--~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~ 307 (565)
T 3ntd_A 235 TAHQHIKGH---LSLTL-S--NGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMM-QTSDPAIYAVGDAVEE 307 (565)
T ss_dssp CTTCCTTCE---EEEEE-T--TSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTC-BCSSTTEEECGGGBCE
T ss_pred cccccCCCc---EEEEE-c--CCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCc-ccCCCCEEEeeeeEee
Confidence 2222 33332 2 2347999999999999999987653 6888999999999988 899999999999984
Q ss_pred ------Cc--chhhhhhhchHHHHHHHHHHHHhcC-cce----eeecCCCccCCCCcCCCCCCCC
Q 009224 379 ------HE--WRQAVTAAGSGCIAALSVERYLVNN-NLL----IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 379 ------~~--~~~~~~A~~~g~~aa~~i~~~l~~~-~~~----~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+ +..+..|..||+.||.+|...-... ..+ ..|..|+++. ||++++++++
T Consensus 308 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~e~~a~~ 370 (565)
T 3ntd_A 308 QDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGA--TGKNEKQLKQ 370 (565)
T ss_dssp EBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred ccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEE--ecCCHHHHHH
Confidence 21 2467899999999999996321111 111 3367889998 9999988654
No 50
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=4.8e-37 Score=308.75 Aligned_cols=302 Identities=20% Similarity=0.246 Sum_probs=221.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
..||+|||||+||++||..|++.| +|+|||+++...+....+.. ...+ .....++..+..+.+++.+++++
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~-----~~~g---~~~~~~~~~~~~~~~~~~~v~~~ 78 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSH-----YIAG---FIPRNRLFPYSLDWYRKRGIEIR 78 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHH-----HHTT---SSCGGGGCSSCHHHHHHHTEEEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHH-----HHhC---CCCHHHhccCCHHHHHhCCcEEE
Confidence 469999999999999999999999 99999997763221111110 0111 12233333344566778899999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC----CCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP----LFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~----~~~~k~v~VvG~ 248 (540)
.+ +|+.++.+...++ .++.++.||+||||||++|+.|++||.+. +........... +.++++++|||+
T Consensus 79 ~g~~v~~id~~~~~V~--~~g~~~~~d~lViATGs~p~~p~i~G~~~-----v~~~~~~~~~~~l~~~~~~~~~vvViGg 151 (367)
T 1xhc_A 79 LAEEAKLIDRGRKVVI--TEKGEVPYDTLVLATGARAREPQIKGKEY-----LLTLRTIFDADRIKESIENSGEAIIIGG 151 (367)
T ss_dssp CSCCEEEEETTTTEEE--ESSCEEECSEEEECCCEEECCCCSBTGGG-----EECCCSHHHHHHHHHHHHHHSEEEEEEC
T ss_pred ECCEEEEEECCCCEEE--ECCcEEECCEEEECCCCCCCCCCCCCcCC-----EEEEcCHHHHHHHHHHhhcCCcEEEECC
Confidence 98 6999998765554 46778999999999999999999998432 111111111000 113589999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|++|+|+|..|++.|.+|+++++.+.+++ ..+.+.+.+++.||++++++++.++..+ .+.+. +++
T Consensus 152 G~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~------~v~~~-----~g~ 220 (367)
T 1xhc_A 152 GFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE------GVLTN-----SGF 220 (367)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSS------EEEET-----TEE
T ss_pred CHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEee------EEEEC-----CCE
Confidence 99999999999999999999999887654 3445566678899999999999999732 35542 234
Q ss_pred EEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~~i~~ 400 (540)
+++|.||+|+|++|+++++.. +++.+ +| +.||+++ +|+.|+|||+|||+.. .++.+..|..||+.||.+|..
T Consensus 221 -i~~D~vi~a~G~~p~~~ll~~~gl~~~-~g-i~Vd~~~-~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g 296 (367)
T 1xhc_A 221 -IEGKVKICAIGIVPNVDLARRSGIHTG-RG-ILIDDNF-RTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 296 (367)
T ss_dssp -EECSCEEEECCEEECCHHHHHTTCCBS-SS-EECCTTS-BCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTT
T ss_pred -EEcCEEEECcCCCcCHHHHHhCCCCCC-CC-EEECCCc-ccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcC
Confidence 999999999999999987643 56665 44 9999988 8999999999999752 236788999999999999964
Q ss_pred HHhc-Cc-ce---eeecCCCccCCCCcCCCCCC
Q 009224 401 YLVN-NN-LL---IEFHQPQAEEPKKDLTDRDV 428 (540)
Q Consensus 401 ~l~~-~~-~~---~~~~~~~~~~~~v~~~~~~~ 428 (540)
.... .. .+ ..|+.|+++. +|+++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~~ 327 (367)
T 1xhc_A 297 EPRRYNFKFRSTVFKFGKLQIAI--IGNTKGEG 327 (367)
T ss_dssp CCCCCCSSCCEEEEEETTEEEEE--EECCSSCE
T ss_pred CCccCCCCCCceEEEECCceEEE--ECCCCCCC
Confidence 2110 11 11 2578889888 99998753
No 51
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=100.00 E-value=8.2e-36 Score=312.73 Aligned_cols=322 Identities=21% Similarity=0.287 Sum_probs=235.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccC-----------c----cccC--CCCC---C-
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTT-----------E----VENF--PGFP---D- 150 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~-----------~----~~~~--~~~~---~- 150 (540)
+||+|||||+||+++|..|++. |++|+|||+.+ +||.+.... . ...+ .+++ .
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~----~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG----IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD 78 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC----TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC----cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 7999999999999999999999 99999999876 333322110 0 0011 1221 0
Q ss_pred -CCChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEee----CCcEEEEE-CCe--EEEecEEEEccCCCCCC
Q 009224 151 -GITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVK----SNPFTVKS-GER--KVKCHSIVFATGATAKR 211 (540)
Q Consensus 151 -~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~----~~~~~v~~-~~~--~~~~d~lviAtG~~~~~ 211 (540)
......+. ..+.+.+++.+++++.+++..++.. ++.+.+.. ++. .+.||+||+|||+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~ 158 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRI 158 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC
Confidence 12233332 2345667788999999988777762 24566654 343 79999999999999998
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
|++||.+.. .+......... ...+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+++ ....+.+.+
T Consensus 159 p~i~g~~~~---~v~~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 233 (499)
T 1xdi_A 159 LPSAQPDGE---RILTWRQLYDL--DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESF 233 (499)
T ss_dssp CGGGCCCSS---SEEEGGGGGGC--SSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHH
T ss_pred CCCCCCCcC---cEEehhHhhhh--hccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH
Confidence 888886532 12221111111 12478999999999999999999999999999999987754 344555667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc--cc-cceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL--LQ-GQVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--~~-~~~~~~~~g~i~vd~~~~ 363 (540)
++.||++++++.+.++..++++ +.+.. ++++++++|.||+|+|++|++++ +. .+++++++|+|.||+++
T Consensus 234 ~~~GV~i~~~~~V~~i~~~~~~----v~v~~---~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~- 305 (499)
T 1xdi_A 234 AERGVRLFKNARAASVTRTGAG----VLVTM---TDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVS- 305 (499)
T ss_dssp HHTTCEEETTCCEEEEEECSSS----EEEEE---TTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSS-
T ss_pred HHCCCEEEeCCEEEEEEEeCCE----EEEEE---CCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCc-
Confidence 8899999999999999876532 34433 33457999999999999999987 33 36888888999999998
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH-hc---Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL-VN---NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l-~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
+|+.|+|||+|||++.+ .....|..||+.||.+|...- .. ... ...|+.|+++. ||+++.++++ .+++..
T Consensus 306 ~t~~~~IyA~GD~~~~~-~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~ 381 (499)
T 1xdi_A 306 RTLATGIYAAGDCTGLL-PLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAA--VGVPQSVIDAGSVAART 381 (499)
T ss_dssp BCSSTTEEECSGGGTSC-SCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEE--EESCHHHHHHTSSCEEE
T ss_pred ccCCCCEEEEeccCCCc-ccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceE--eCCCHHHHHhCCCCEEE
Confidence 89999999999999864 678899999999999996420 00 111 14578899998 9999887653 334443
No 52
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=100.00 E-value=1.6e-35 Score=307.45 Aligned_cols=317 Identities=22% Similarity=0.313 Sum_probs=227.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc----c--cCCCCC--CCCCh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV----E--NFPGFP--DGITG 154 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~----~--~~~~~~--~~~~~ 154 (540)
.+||+|||||+||++||..|++.|++|+|||+.. .||.+.... .. . ...+++ .....
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~----~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE----VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDL 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC----CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCH
Confidence 4899999999999999999999999999999976 344332110 00 0 000111 11222
Q ss_pred HHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC-CCCcccccC
Q 009224 155 PDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN-LPREDEFWS 222 (540)
Q Consensus 155 ~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~-ipg~~~~~~ 222 (540)
..+..+ +...+++.+++++.+++..++ .+.+.+ .+..+.||+||+|||++|+.|+ +|+...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v--~g~~~~~d~lViATGs~p~~p~gi~~~~~--- 154 (464)
T 2eq6_A 82 KKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVG--PKEVEV--GGERYGAKSLILATGSEPLELKGFPFGED--- 154 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE--TTEEEE--TTEEEEEEEEEECCCEEECCBTTBCCSSS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcc--CCEEEE--ccEEEEeCEEEEcCCCCCCCCCCCCCCCc---
Confidence 222221 344567789999999877665 345555 3678999999999999998775 666321
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
+.......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++
T Consensus 155 --v~~~~~~~~l~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~ 231 (464)
T 2eq6_A 155 --VWDSTRALKVE-EGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKT 231 (464)
T ss_dssp --EECHHHHTCGG-GCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSE
T ss_pred --EEcHHHHHhhh-hhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCC
Confidence 11111111111 11479999999999999999999999999999999887654 33455566788999999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.++..+++ . ..+.+.+..+|+..++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+|||+|
T Consensus 232 ~v~~i~~~~~-~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~G 308 (464)
T 2eq6_A 232 KAVGYEKKKD-G-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARM-ETSVPGVYAIG 308 (464)
T ss_dssp EEEEEEEETT-E-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTC-BCSSTTEEECG
T ss_pred EEEEEEEeCC-E-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCc-ccCCCCEEEEe
Confidence 9999987643 1 2244432111444579999999999999999864 2 36778888999999998 89999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcceeeecCCCccCCCCcCCCCCCCC
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNLLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||++.+ .....|..||+.||.+|...-. ..-....|+.|+++. ||+++.++++
T Consensus 309 D~~~~~-~l~~~A~~~g~~aa~~i~g~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~ 364 (464)
T 2eq6_A 309 DAARPP-LLAHKAMREGLIAAENAAGKDSAFDYQVPSVVYTSPEWAG--VGLTEEEAKR 364 (464)
T ss_dssp GGTCSS-CCHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECSSSEEEE--EECCHHHHHH
T ss_pred ccCCCc-ccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEECCCCEEE--EeCCHHHHHh
Confidence 999863 6888999999999999974110 010113478899998 9999887764
No 53
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=100.00 E-value=9.5e-38 Score=315.33 Aligned_cols=296 Identities=17% Similarity=0.199 Sum_probs=219.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+..+|+|||||+||++||..|+..+.+|+|||+++..++....+.. .+.+ .....++..+..+++++.++++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~-----~l~g---~~~~~~l~~~~~~~~~~~~i~~ 79 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNE-----IIAK---NKSIDDILIKKNDWYEKNNIKV 79 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHH-----HHHS---CCCGGGTBSSCHHHHHHTTCEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhH-----HHcC---CCCHHHccCCCHHHHHHCCCEE
Confidence 4578999999999999999997779999999998763321111110 1111 1223344445566778899999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC----CCCCCEEEEEe
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP----LFKGQVLAVVG 247 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~----~~~~k~v~VvG 247 (540)
+.+ +|+.+|.+++.+++. ++..+.||+||||||++|+.|++||.+ ++......+.... +..+++|+|||
T Consensus 80 ~~~~~V~~id~~~~~v~~~-~g~~~~yd~lvlAtG~~p~~p~i~G~~-----~v~~~~~~~d~~~l~~~l~~~~~vvVIG 153 (385)
T 3klj_A 80 ITSEFATSIDPNNKLVTLK-SGEKIKYEKLIIASGSIANKIKVPHAD-----EIFSLYSYDDALKIKDECKNKGKAFIIG 153 (385)
T ss_dssp ECSCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCCCTTCS-----CEECCSSHHHHHHHHHHHHHHSCEEEEC
T ss_pred EeCCEEEEEECCCCEEEEC-CCCEEECCEEEEecCCCcCCCCCCCCC-----CeEEeCCHHHHHHHHHHhhcCCeEEEEC
Confidence 988 899999988877665 677899999999999999999999976 1222211111111 12378999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG 321 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g 321 (540)
+|.+|+|+|..|++.|.+|+++++.+.+++ ..+.+.+.+++.||++++++.+.++
T Consensus 154 gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------------- 214 (385)
T 3klj_A 154 GGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------------- 214 (385)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------------
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------------
Confidence 999999999999999999999999987654 3455666788999999999877665
Q ss_pred ceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHHH
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAALS 397 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~~ 397 (540)
++++++|.||+|+|++|+++++.. ++..+ +| +.||+++ +|+.|+|||+|||+.. .++.+..|..||+.||.+
T Consensus 215 -g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~g-i~vd~~~-~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~ 290 (385)
T 3klj_A 215 -GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RG-ILVNDHM-ETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLN 290 (385)
T ss_dssp -HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SS-EEECTTC-BCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHH
T ss_pred -CeEEecCeEEECcCcccChhhhhhcCCCcC-CC-EEECCCc-ccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHH
Confidence 234789999999999999988764 56554 34 9999998 8999999999999973 146789999999999999
Q ss_pred HHHHHhcC-c-cee---eecCCCccCCCCcCCCCC
Q 009224 398 VERYLVNN-N-LLI---EFHQPQAEEPKKDLTDRD 427 (540)
Q Consensus 398 i~~~l~~~-~-~~~---~~~~~~~~~~~v~~~~~~ 427 (540)
|...-... . .+. .+..+++.. +|+++.+
T Consensus 291 i~g~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~ 323 (385)
T 3klj_A 291 ACGEDASYSEIIPSPILKVSGISIIS--CGDIENN 323 (385)
T ss_dssp HTTCCCCCCCCCCCCEEEETTEEEEE--ESCCTTC
T ss_pred hcCCCcCCCCCCCcEEEEeCCCcEEE--EcCCCCC
Confidence 96421111 1 111 123455555 7877654
No 54
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=100.00 E-value=5.9e-35 Score=303.92 Aligned_cols=321 Identities=21% Similarity=0.275 Sum_probs=231.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-----------------cccCC-CCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-----------------VENFP-GFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-----------------~~~~~-~~~---~~ 151 (540)
..+||+|||||+||+++|.+|++.|++|+|||++. +||.+..... ...+. +++ ..
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~----~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT----IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 78 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS----TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC----CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCc
Confidence 35899999999999999999999999999999874 5555432110 00111 221 11
Q ss_pred CChHHHHH-------HH-----HHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCC
Q 009224 152 ITGPDLMD-------RM-----RRQAERW-GAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 152 ~~~~~~~~-------~~-----~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ip 215 (540)
....++.. ++ .+.+++. +++++.+++..++ .+.+.+.. ++ ..++||+||+|||++|+.|++|
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~ 156 (467)
T 1zk7_A 79 IDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKD--DQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIP 156 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEE--TTEEEEEETTSSEEEEECSEEEECCCEEECCCCCT
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEcc--CCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCC
Confidence 22333322 12 2334455 8999999887776 34566654 44 6799999999999999999999
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNI 291 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv 291 (540)
|.+.... +......+ . ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||
T Consensus 157 G~~~~~~--~~~~~~~~-~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv 231 (467)
T 1zk7_A 157 GLKESPY--WTSTEALA-S--DTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGI 231 (467)
T ss_dssp TTTTSCC--BCHHHHHH-C--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCcCce--ecHHHHhc-c--cccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHHhCCC
Confidence 8754211 11111111 1 12479999999999999999999999999999999887654 33445556788999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++.+.++..+++ ...+.+ . +.++++|.||+|+|++|++.++ ..+++++++|+|.||+++ +|+.|
T Consensus 232 ~i~~~~~v~~i~~~~~--~~~v~~-----~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~ 302 (467)
T 1zk7_A 232 EVLEHTQASQVAHMDG--EFVLTT-----T-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSNP 302 (467)
T ss_dssp EEETTCCEEEEEEETT--EEEEEE-----T-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC-BCSST
T ss_pred EEEcCCEEEEEEEeCC--EEEEEE-----C-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCc-ccCCC
Confidence 9999999999987543 222322 1 2469999999999999998753 336778888999999998 89999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Ccce-eeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NNLL-IEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
+|||+|||+..+ ..+..|..||+.||.+|...-.. ...+ ..|+.|++++ +|+++.++++ .+++..
T Consensus 303 ~iya~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~~~~a~~~g~~~~~ 372 (467)
T 1zk7_A 303 NIYAAGDCTDQP-QFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVAT--VGYSEAEAHHDGIETDS 372 (467)
T ss_dssp TEEECSTTBSSC-CCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEEECSSSEEEE--EECCHHHHHHTTCCEEE
T ss_pred CEEEEeccCCCc-ccHHHHHHHHHHHHHHHcCCCcccCCCCCCEEEecCCceEE--EecCHHHHHhcCCCeEE
Confidence 999999999874 67889999999999998642000 1112 4588899998 9999887653 334433
No 55
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=100.00 E-value=2.9e-35 Score=307.37 Aligned_cols=314 Identities=19% Similarity=0.245 Sum_probs=231.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccCC--CCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENFP--GFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~~--~~~---~~~~ 153 (540)
.+||+|||||+||++||..|+++|++|+|||+.. +||.+..... ....+ ++. ....
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~----~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 101 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR----IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN 101 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC----CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence 5899999999999999999999999999999943 5665432110 00000 111 1122
Q ss_pred hH-----------HHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC-CCCCCCccccc
Q 009224 154 GP-----------DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK-RLNLPREDEFW 221 (540)
Q Consensus 154 ~~-----------~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~-~~~ipg~~~~~ 221 (540)
.. .+...+...+++.+++++.+.+..++. +.+.+..++..+.||+||+|||+.|. .|.+||.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~ 179 (484)
T 3o0h_A 102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCL 179 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccc
Confidence 22 223334455677899999998888763 33433225678999999999999998 88999876321
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
.. ..... ....+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.+ ....+.+.+++.||+++++
T Consensus 180 ~~-----~~~~~--~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 252 (484)
T 3o0h_A 180 TS-----NEIFD--LEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYE 252 (484)
T ss_dssp CT-----TTGGG--CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESS
T ss_pred cH-----HHHHh--HHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeC
Confidence 11 00001 113589999999999999999999999999999999887654 3444555677889999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..++++ + .+.+ . +++++++|.||+|+|++|++.++. .+++++++|++.||+++ +|+.|+|||+
T Consensus 253 ~~V~~i~~~~~~-v-~v~~---~--~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~ 324 (484)
T 3o0h_A 253 ATVSQVQSTENC-Y-NVVL---T--NGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKM-TTNVSHIWAV 324 (484)
T ss_dssp CCEEEEEECSSS-E-EEEE---T--TSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEEC
T ss_pred CEEEEEEeeCCE-E-EEEE---C--CCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCC-CCCCCCEEEE
Confidence 999999886542 2 2333 2 235799999999999999998643 47888999999999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|||++. ++.+..|..+|+.||.+|...... ... ...|+.|++++ ||++|+++++.
T Consensus 325 GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 384 (484)
T 3o0h_A 325 GDVTGH-IQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGT--VGLSEEDALHR 384 (484)
T ss_dssp GGGGTS-CCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred EecCCC-CcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEE--eeCCHHHHHHc
Confidence 999986 478899999999999999753221 111 25588999999 99999988764
No 56
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=100.00 E-value=2e-36 Score=315.47 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=219.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHH-------HHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD-------LMDRMRRQ 164 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 164 (540)
++||+|||||+||++||..|++. |++|+|||+++..++....+.. ...+.. ....+ +..+...+
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~-----~~~g~~--~~~~~~~~~~~~~~~~~~~~ 75 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPY-----YVSGEV--SNIESLQATPYNVVRDPEFF 75 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccch-----hhcCCC--CchHHhccccchhccCHHHH
Confidence 36999999999999999999999 9999999998763211100000 000000 00111 33344444
Q ss_pred HHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeee------cCC
Q 009224 165 AERWGAELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAI------CDG 233 (540)
Q Consensus 165 ~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~------~~~ 233 (540)
.++.+++++.+ +|+.++.+.+.+.+.. ++. .+.||+||+|||+.|..|++||.+. ..+..... ...
T Consensus 76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~---~~v~~~~~~~~~~~l~~ 152 (472)
T 3iwa_A 76 RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDL---AGVTPVTNLDEAEFVQH 152 (472)
T ss_dssp -----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTS---BTEEECCSHHHHHHHHH
T ss_pred hhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCC---CCEEEeCCHHHHHHHHH
Confidence 55689998765 8999999999888875 233 7899999999999999999998752 11211111 110
Q ss_pred CCCCCCCCEEEEEeCCccHHHHHHHHHhc-CCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCC
Q 009224 234 ASPLFKGQVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 234 ~~~~~~~k~v~VvG~G~~a~e~a~~l~~~-g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
......+++++|||+|++|+|+|..|.+. |.+|+++.+.+.+.+ ....+.+.+++.||++++++.+.++..++
T Consensus 153 ~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~ 232 (472)
T 3iwa_A 153 AISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN 232 (472)
T ss_dssp HCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESS
T ss_pred HhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC
Confidence 00113479999999999999999999999 999999999887654 34455566788999999999999998753
Q ss_pred CCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCC-------
Q 009224 307 KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD------- 378 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~------- 378 (540)
+++. +.+. +| +++++|.||+|+|++|++.++.. +++++++|+|.||+++ +|+.|+|||+|||+.
T Consensus 233 -~~v~-v~~~---~g--~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~g 304 (472)
T 3iwa_A 233 -GKVA-RVIT---DK--RTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRM-RTSDPDIFAGGDCVTIPNLVTG 304 (472)
T ss_dssp -SBEE-EEEE---SS--CEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTC-BCSSTTEEECGGGEEEEBTTTS
T ss_pred -CeEE-EEEe---CC--CEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCc-ccCCCCEEEeccceecccccCC
Confidence 3333 4432 23 47999999999999999987653 6888999999999998 899999999999984
Q ss_pred Cc--chhhhhhhchHHHHHHHHHHHHhcC-cc-e---eeecCCCccCCCCcCCCCCCCC
Q 009224 379 HE--WRQAVTAAGSGCIAALSVERYLVNN-NL-L---IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 379 ~~--~~~~~~A~~~g~~aa~~i~~~l~~~-~~-~---~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+ +..+..|..||+.||.+|...-... .. + ..|+.|++++ ||++|.++++
T Consensus 305 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~--vG~~e~~a~~ 361 (472)
T 3iwa_A 305 KPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASG--AGLTVEGALR 361 (472)
T ss_dssp SEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEE--EECCHHHHHH
T ss_pred ceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEE--EECCHHHHHH
Confidence 21 2467889999999999986321111 11 1 3467889998 9999988764
No 57
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=100.00 E-value=6.9e-37 Score=327.53 Aligned_cols=318 Identities=18% Similarity=0.202 Sum_probs=235.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.++||+|||||+||++||..|++. |++|+|||+.+..++....+.. ...+... .....+..++....+++++
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~-----~~~g~~~-~~~~~~~~~~~~~~~~~gi 108 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPY-----YIGGVIT-ERQKLLVQTVERMSKRFNL 108 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHH-----HHTTSSC-CGGGGBSSCHHHHHHHTTC
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCch-----hhcCcCC-ChHHhhccCHHHHHHhcCc
Confidence 457999999999999999999998 8999999998763322111100 0111100 1112234456677778999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC------CCCC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS------PLFK 239 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~------~~~~ 239 (540)
+++.+ +|+.++.+++.+.+.. ++. .+.||+||+|||++|..|++||.+.. ..+.......... ....
T Consensus 109 ~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~--~~v~~~~~~~~~~~~~~~l~~~~ 186 (588)
T 3ics_A 109 DIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEA--KALFTLRNVPDTDRIKAYIDEKK 186 (588)
T ss_dssp EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTC--TTEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccC--CCeEEeCCHHHHHHHHHHHhhcC
Confidence 99765 8999999999888874 344 78999999999999999999987321 1121111100000 0135
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.+ ....+.+.+++.||++++++.+.++..+.+ .+.
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~----~v~ 262 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA----VVR 262 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT----EEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC----EEE
Confidence 89999999999999999999999999999999887655 344555667889999999999999987543 354
Q ss_pred EEEccCCceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCC-------c--chhh
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH-------E--WRQA 384 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~-------~--~~~~ 384 (540)
+. +++++++|.||+|+|++|++.++. .+++++++|+|.||+++ +|+.|+|||+|||+.. + +..+
T Consensus 263 ~~-----~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~ 336 (588)
T 3ics_A 263 LK-----SGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKF-QTSDPHIYAIGDAIEVKDFVTETETMIPLA 336 (588)
T ss_dssp ET-----TSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTS-BCSSTTEEECGGGBCEEBTTTCCEECCCCH
T ss_pred EC-----CCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCcc-ccCCCCEEEeeeeeecccccCCcccccccH
Confidence 42 235799999999999999998775 36888899999999998 8999999999999842 1 3577
Q ss_pred hhhhchHHHHHHHHHH-HHhc-Cc-ce---eeecCCCccCCCCcCCCCCCCC
Q 009224 385 VTAAGSGCIAALSVER-YLVN-NN-LL---IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 385 ~~A~~~g~~aa~~i~~-~l~~-~~-~~---~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
..|..||+.||.+|.. .-.. .. .+ ..|+.|++++ ||++|+++++
T Consensus 337 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~--vGlte~~a~~ 386 (588)
T 3ics_A 337 WPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVAT--TGLNEKILKR 386 (588)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEE--ecCCHHHHHH
Confidence 8899999999999864 1111 11 11 2378899999 9999988764
No 58
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=100.00 E-value=1.9e-36 Score=313.90 Aligned_cols=318 Identities=15% Similarity=0.201 Sum_probs=230.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+||+|||||+||+++|..|++. |++|+|||+++..++.+..+.. ...+........++.....+.+++.++++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~gv~~ 75 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIAL-----YLGKEIKNNDPRGLFYSSPEELSNLGANV 75 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHH-----HHTTCBGGGCGGGGBSCCHHHHHHTTCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchh-----hhcCCcccCCHHHhhhcCHHHHHHcCCEE
Confidence 4899999999999999999998 9999999998753222211100 00000000012222223345567889999
Q ss_pred EEe-eEEEEEeeCCcEEEEE--C--CeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC----CCCCCCCCEE
Q 009224 173 HQE-DVEFIDVKSNPFTVKS--G--ERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG----ASPLFKGQVL 243 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~--~--~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~----~~~~~~~k~v 243 (540)
+.+ +|..++.+++.+.+.. + +..+.||+||+|||++|+.|++||.+. ..+........ ......++++
T Consensus 76 ~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~v 152 (452)
T 2cdu_A 76 QMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDS---SRVYLCKNYNDAKKLFEEAPKAKTI 152 (452)
T ss_dssp EESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTS---TTEEECSSHHHHHHHHHHGGGCSEE
T ss_pred EeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCC---CCEEEeCcHHHHHHHHHHhccCCeE
Confidence 777 6899998888888864 1 467999999999999999999998753 11222111000 0012358999
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEE
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK 317 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~ 317 (540)
+|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++++.++..++ +++..+.
T Consensus 153 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~~v~--- 228 (452)
T 2cdu_A 153 TIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVD-DEIITKT--- 228 (452)
T ss_dssp EEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEET-TEEEEEE---
T ss_pred EEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC-CeEEEEE---
Confidence 9999999999999999999999999999887654 23455566788999999999999998632 3332222
Q ss_pred ccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhh
Q 009224 318 VDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAA 388 (540)
Q Consensus 318 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~ 388 (540)
. + +.++++|.||+|+|++|++.++...++++++|+|.||+++ +|+.|+|||+|||+..+ +..+..|.
T Consensus 229 ~-~--g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 304 (452)
T 2cdu_A 229 L-D--GKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYM-HSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAV 304 (452)
T ss_dssp T-T--SCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTS-BCSSTTEEECSTTBCEEETTTTEEECCCCHHHHH
T ss_pred e-C--CCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCc-CcCCCCEEEcceEEEeccccCCCeeecchHHHHH
Confidence 2 2 3569999999999999999987655777889999999998 89999999999999842 25788999
Q ss_pred chHHHHHHHHHHHHhc-Cc---c-eeeecCCCccCCCCcCCCCCCCC
Q 009224 389 GSGCIAALSVERYLVN-NN---L-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 389 ~~g~~aa~~i~~~l~~-~~---~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.||+.||.+|...-.. .. . ...|..|+++. +|+++.++++
T Consensus 305 ~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~a~~ 349 (452)
T 2cdu_A 305 RQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVS--TGINTALAKA 349 (452)
T ss_dssp HHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEe--ecCCHHHHHH
Confidence 9999999999642111 01 1 13455788888 9998876653
No 59
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=100.00 E-value=3.5e-36 Score=338.70 Aligned_cols=358 Identities=16% Similarity=0.193 Sum_probs=256.5
Q ss_pred CCCCcccceeecCcccccccceeeccC-CCCCChhhhhhhhcccc-----c-ccCc--------ccCCcccEEEECCCHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNST-SGPHHLPALRVRAASSV-----D-ALSS--------AEKSVENVVIIGSGPA 105 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~-~~~~--------~~~~~~~vvVIGgG~a 105 (540)
|++..+...|+ ....|...|.++.. ..|+.|..++++..+.. . ...+ +....+||+|||||||
T Consensus 121 ~~p~~~grvCp--~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgGpA 198 (1025)
T 1gte_A 121 PLGLTCGMVCP--TSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPA 198 (1025)
T ss_dssp TTHHHHHHHCC--GGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCSHH
T ss_pred ChhHhhcCCCC--ChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECccHH
Confidence 57777787773 44567888888774 58999999999877531 1 0000 1234689999999999
Q ss_pred HHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeC
Q 009224 106 GYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKS 184 (540)
Q Consensus 106 Gl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~ 184 (540)
|++||..|+++|+ +|+|||+.+. +||.+.+ ++|.+....++.++..+.+++.|++++.+++...
T Consensus 199 Gl~aA~~L~~~G~~~Vtv~E~~~~---~GG~~~~--------~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---- 263 (1025)
T 1gte_A 199 SISCASFLARLGYSDITIFEKQEY---VGGLSTS--------EIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---- 263 (1025)
T ss_dssp HHHHHHHHHHTTCCCEEEEESSSS---CSTHHHH--------TSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST----
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCC---CCccccc--------cCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc----
Confidence 9999999999999 7999999877 8887643 3333344556777778888999999999855421
Q ss_pred CcEEEEECCeEEEecEEEEccCC-CCCCCCC-CCcccccCCCeeeee-e--------------cCCCCCCCCCCEEEEEe
Q 009224 185 NPFTVKSGERKVKCHSIVFATGA-TAKRLNL-PREDEFWSRGISACA-I--------------CDGASPLFKGQVLAVVG 247 (540)
Q Consensus 185 ~~~~v~~~~~~~~~d~lviAtG~-~~~~~~i-pg~~~~~~~~~~~~~-~--------------~~~~~~~~~~k~v~VvG 247 (540)
+.+++. +...+.||+||||||+ .|+.+++ +|.+.. .++.... + .+.. ....+++|+|||
T Consensus 264 ~~v~~~-~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~--~gv~~a~~~L~~~~~~~~~~~~~~~~~-~~~~~~~VvVIG 339 (1025)
T 1gte_A 264 NEITLN-TLKEEGYKAAFIGIGLPEPKTDDIFQGLTQD--QGFYTSKDFLPLVAKSSKAGMCACHSP-LPSIRGAVIVLG 339 (1025)
T ss_dssp TSBCHH-HHHHTTCCEEEECCCCCEECCCGGGTTCCTT--TTEEEHHHHHHHHHHHHCBTTBSCCCC-CCCCCSEEEEEC
T ss_pred ceEEhh-hcCccCCCEEEEecCCCCCCCCCCCCCCCCC--CCEEEhHHHHHHHHhhccccccccccc-ccccCCcEEEEC
Confidence 223332 2234679999999999 4876654 343311 1122110 0 1111 112467999999
Q ss_pred CCccHHHHHHHHHhcCC-eEEEEEeccc-ccc-cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc-----
Q 009224 248 GGDTATEEAIYLTKFAR-HVHLLVRREQ-LRA-SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD----- 319 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~-~v~li~~~~~-~~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~----- 319 (540)
||++|+|+|..+.++|. +|++++|++. +++ ....+. .+++.||++++++.+.++..+ ++++.++.+.+..
T Consensus 340 gG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~-~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g 417 (1025)
T 1gte_A 340 AGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVE-LAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETG 417 (1025)
T ss_dssp SSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHH-HHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTS
T ss_pred CChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHH-HHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCC
Confidence 99999999999999996 8999999873 333 334443 456789999999999999864 4667777665321
Q ss_pred -----CCceEEEEccEEEEecccccC-cccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchH
Q 009224 320 -----TGEESVLEAKGLFYGIGHSPN-SQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391 (540)
Q Consensus 320 -----~g~~~~i~~D~vi~a~G~~p~-~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g 391 (540)
+|++.++++|.||+|+|++|+ ..++.. +++++++|+|.||+..++|+.|+|||+|||++.+ ..+..|+.+|
T Consensus 418 ~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~-~~~~~A~~~G 496 (1025)
T 1gte_A 418 KWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA-NTTVESVNDG 496 (1025)
T ss_dssp CEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC-CCHHHHHHHH
T ss_pred CcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCc-hHHHHHHHHH
Confidence 123467999999999999875 555543 6888999999999843389999999999999864 6889999999
Q ss_pred HHHHHHHHHHHhc---Cc----ceeeecCCCccCCCCcCC
Q 009224 392 CIAALSVERYLVN---NN----LLIEFHQPQAEEPKKDLT 424 (540)
Q Consensus 392 ~~aa~~i~~~l~~---~~----~~~~~~~~~~~~~~v~~~ 424 (540)
+.||.+|.++|.. .. ....|+.|+++. ++++
T Consensus 497 ~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~--v~ls 534 (1025)
T 1gte_A 497 KQASWYIHKYIQAQYGASVSAKPELPLFYTPVDL--VDIS 534 (1025)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGG--CCCC
T ss_pred HHHHHHHHHHHHhccCCCcccCcCcccccccccc--ccce
Confidence 9999999999873 22 224566666655 4444
No 60
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=100.00 E-value=1.5e-35 Score=303.88 Aligned_cols=287 Identities=22% Similarity=0.259 Sum_probs=216.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCc--eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLK--PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~--v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.++||+|||||+||++||..|++.|++ |+|+|+++..++....+ ...+ +.......++..+....+.+.++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~i 80 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPL-----SKEY--LAREKTFERICIRPAQFWEDKAV 80 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGG-----GTTT--TTTSSCSGGGBSSCHHHHHHTTE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccC-----CHHH--HcCCCCHHHhccCCHHHHHHCCc
Confidence 458999999999999999999999987 99999977522111011 0011 11112223333444566778999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCC-CCEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFK-GQVLA 244 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~-~k~v~ 244 (540)
+++.+ +|+.++...+.+.+. ++..+.||+||+|||+.|+.|++||.+.. .+......... ..... +++++
T Consensus 81 ~~~~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~~~~~~i~g~~~~---~v~~~~~~~d~~~l~~~~~~~~~~vv 156 (415)
T 3lxd_A 81 EMKLGAEVVSLDPAAHTVKLG-DGSAIEYGKLIWATGGDPRRLSCVGADLA---GVHAVRTKEDADRLMAELDAGAKNAV 156 (415)
T ss_dssp EEEETCCEEEEETTTTEEEET-TSCEEEEEEEEECCCEECCCCBTTSSCCB---TEECCCSHHHHHHHHHHHHTTCCEEE
T ss_pred EEEeCCEEEEEECCCCEEEEC-CCCEEEeeEEEEccCCccCCCCCCCcccc---CEEEEcCHHHHHHHHHHhhhcCCeEE
Confidence 99998 999999887766654 66789999999999999999999986531 12211111100 01123 89999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
|||+|++|+|+|..+.+.|.+|+++++.+.+++ ..+.+.+.+++.||++++++.+.++..++ +++..+.+.
T Consensus 157 ViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~v~l~-- 233 (415)
T 3lxd_A 157 VIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-TKVTGVRMQ-- 233 (415)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESS-SBEEEEEES--
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecC-CcEEEEEeC--
Confidence 999999999999999999999999999987654 34556667788999999999999998754 455556652
Q ss_pred cCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcch----------hhhhh
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR----------QAVTA 387 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~----------~~~~A 387 (540)
++++++||.||+|+|++|++.++.. ++..+ +| |.||+++ +|+.|+|||+|||+..+.. .+..|
T Consensus 234 ---dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~-~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A 307 (415)
T 3lxd_A 234 ---DGSVIPADIVIVGIGIVPCVGALISAGASGG-NG-VDVDEFC-RTSLTDVYAIGDCAAHANDFADGAVIRLESVQNA 307 (415)
T ss_dssp ---SSCEEECSEEEECSCCEESCHHHHHTTCCCS-SS-EECCTTC-BCSSTTEEECGGGEEEECGGGTTCEECCCSHHHH
T ss_pred ---CCCEEEcCEEEECCCCccChHHHHhCCCCcC-CC-EEECCCC-CcCCCCEEEEEeeeeecCcccCCcceeechHHHH
Confidence 2457999999999999999987753 56665 44 9999998 8999999999999986432 35889
Q ss_pred hchHHHHHHHHH
Q 009224 388 AGSGCIAALSVE 399 (540)
Q Consensus 388 ~~~g~~aa~~i~ 399 (540)
..||+.||.+|.
T Consensus 308 ~~qg~~aa~~i~ 319 (415)
T 3lxd_A 308 NDMATAAAKDIC 319 (415)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
No 61
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=100.00 E-value=5.6e-35 Score=303.08 Aligned_cols=315 Identities=23% Similarity=0.328 Sum_probs=229.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------c-cCCCCC---CCCChH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------E-NFPGFP---DGITGP 155 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~-~~~~~~---~~~~~~ 155 (540)
+||+|||||+||++||..|++.|++|+|||+.+. +||.+...... . ...+++ ......
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~---~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA---LGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP 78 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC---CCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence 7999999999999999999999999999999865 66654321100 0 000111 011222
Q ss_pred HHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCC
Q 009224 156 DLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 156 ~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~ 224 (540)
++. ..+...+++.+++++.+++..++ .+.+.+..++..+.||+||+|||++|..|+++|.+. ..
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~---~~ 153 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLS--ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDY---ER 153 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCS---SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCc---Cc
Confidence 222 22345567789999999776543 445555434578999999999999999888887543 11
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++++
T Consensus 154 v~~~~~~~~~--~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V 231 (455)
T 2yqu_A 154 VVTSTEALSF--PEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRV 231 (455)
T ss_dssp EECHHHHTCC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred EechHHhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 2221111111 12479999999999999999999999999999999887654 2344555677789999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..+++ .+.+.. . ++.++++|.||+|+|.+|++.++ . .++.++++|++.||+++ +|+.|+|||+|||
T Consensus 232 ~~i~~~~~----~v~v~~-~--~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~-~t~~~~iya~GD~ 303 (455)
T 2yqu_A 232 TAVVPEAK----GARVEL-E--GGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHL-RTRVPHIYAIGDV 303 (455)
T ss_dssp EEEEEETT----EEEEEE-T--TSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTS-BCSSTTEEECGGG
T ss_pred EEEEEeCC----EEEEEE-C--CCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCc-ccCCCCEEEEecC
Confidence 99987653 233332 1 24569999999999999998863 3 36777888999999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+..+ ..+..|..||+.||.+|...-.. ... ...|+.|+++. +|++++++++
T Consensus 304 ~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--~G~~~~~a~~ 358 (455)
T 2yqu_A 304 VRGP-MLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAA--VGYTEEELKA 358 (455)
T ss_dssp SSSC-CCHHHHHHHHHHHHHHHHHSCCCCCGGGCCEEECSSSEEEE--EECCHHHHHH
T ss_pred CCCc-cCHHHHHHhHHHHHHHHcCCCccCCCCCCCEEEEcCCceEE--EECCHHHHHH
Confidence 9874 67889999999999999752110 111 13578899998 9999887664
No 62
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=100.00 E-value=3e-35 Score=304.92 Aligned_cols=310 Identities=22% Similarity=0.327 Sum_probs=224.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccC-----CCCC---C
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENF-----PGFP---D 150 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~-----~~~~---~ 150 (540)
.+||+|||||+||++||..|++.|++|+|||+. . .||.+..... ...+ .+++ .
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~---~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-A---LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP 80 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-C---TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-C---CCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence 589999999999999999999999999999994 3 5555432100 0000 1222 1
Q ss_pred CCChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC-CCCcc
Q 009224 151 GITGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN-LPRED 218 (540)
Q Consensus 151 ~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~-ipg~~ 218 (540)
.....++..+ ....+++.+++++.+++..++ .+.+.+ ++..+.||+||||||++|+.|+ +|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v--~~~~~~~d~lviATGs~p~~~~~~~~~~ 156 (458)
T 1lvl_A 81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQVEV--DGQRIQCEHLLLATGSSSVELPMLPLGG 156 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTEEEE--TTEEEECSEEEECCCEEECCBTTBCCBT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCEEEE--eeEEEEeCEEEEeCCCCCCCCCCCCccC
Confidence 2334443332 335567789999999877664 344444 4478999999999999987665 55221
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
.+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++
T Consensus 157 -----~v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 229 (458)
T 1lvl_A 157 -----PVISSTEALAP--KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIAL 229 (458)
T ss_dssp -----TEECHHHHTCC--SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEE
T ss_pred -----cEecHHHHhhh--hccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 12211111111 12579999999999999999999999999999999987754 2344555677889999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
++++.+.++.. ++ +.+. ..+|+..++++|.||+|+|++|++.++ . .+++++++ +|.||+++ +|+.|+|
T Consensus 230 ~~~~~v~~i~~-~~-----v~v~-~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~-~t~~~~I 300 (458)
T 1lvl_A 230 HLGHSVEGYEN-GC-----LLAN-DGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERC-QTSMHNV 300 (458)
T ss_dssp ETTCEEEEEET-TE-----EEEE-CSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTC-BCSSTTE
T ss_pred EECCEEEEEEe-CC-----EEEE-ECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCC-cCCCCCE
Confidence 99999999986 31 4444 233444679999999999999999864 2 35777777 89999998 7999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcce-eeecCCCccCCCCcCCCCCCCC
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNLL-IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+|||+..+ .....|..||+.||.+|...-. ....+ ..|+.|++++ +|++++++++
T Consensus 301 ya~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~--vG~~e~~a~~ 361 (458)
T 1lvl_A 301 WAIGDVAGEP-MLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVV--VGKTPEQASQ 361 (458)
T ss_dssp EECGGGGCSS-CCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEEECSSSEEEE--EECCHHHHHH
T ss_pred EEeeccCCCc-ccHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEECCCCeEE--EeCCHHHHHH
Confidence 9999999874 6888999999999999974110 11111 3478899988 9999877654
No 63
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=100.00 E-value=1.4e-35 Score=309.20 Aligned_cols=297 Identities=17% Similarity=0.219 Sum_probs=214.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH--HHhC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA--ERWG 169 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 169 (540)
+++++|||||||+||+++|..|++.+++|||||+++. +.+.+.++... .......++...+.... ++.+
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~-------~~~~PlL~~va--~G~l~~~~i~~p~~~~~~~~~~~ 110 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY-------FLFTPLLPSAP--VGTVDEKSIIEPIVNFALKKKGN 110 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE-------EECGGGGGGTT--TTSSCGGGGEEEHHHHHTTCSSC
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC-------cccccchhHHh--hccccHHHhhhhHHHHHHhhcCC
Confidence 3457899999999999999999999999999998654 22222211111 01123333333333333 2347
Q ss_pred CEEEEeeEEEEEeeCCcEEEEE-------------------CCeEEEecEEEEccCCCCCCCCCCCcccc--cCCCeeee
Q 009224 170 AELHQEDVEFIDVKSNPFTVKS-------------------GERKVKCHSIVFATGATAKRLNLPREDEF--WSRGISAC 228 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~-------------------~~~~~~~d~lviAtG~~~~~~~ipg~~~~--~~~~~~~~ 228 (540)
++++.++|+.||++.+.+++.. ++.++.||+||||||+.|+.+++||.++. ....+.+.
T Consensus 111 v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA 190 (502)
T 4g6h_A 111 VTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNS 190 (502)
T ss_dssp EEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHH
T ss_pred eEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHH
Confidence 8999999999999999888753 35689999999999999999999996542 11111111
Q ss_pred eec--------------CCC-CCCCCCCEEEEEeCCccHHHHHHHHHhcC--------------CeEEEEEecccccc--
Q 009224 229 AIC--------------DGA-SPLFKGQVLAVVGGGDTATEEAIYLTKFA--------------RHVHLLVRREQLRA-- 277 (540)
Q Consensus 229 ~~~--------------~~~-~~~~~~k~v~VvG~G~~a~e~a~~l~~~g--------------~~v~li~~~~~~~~-- 277 (540)
... ... .......+++|||+|++|+|+|.+|++.+ .+|+++++.+++++
T Consensus 191 ~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~ 270 (502)
T 4g6h_A 191 LEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMF 270 (502)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTS
T ss_pred HHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCC
Confidence 000 000 00012358999999999999999887542 58999999988765
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEE-ccCCc--eEEEEccEEEEecccccCccc---c-ccc
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK-VDTGE--ESVLEAKGLFYGIGHSPNSQL---L-QGQ 347 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~-~~~g~--~~~i~~D~vi~a~G~~p~~~~---~-~~~ 347 (540)
..+...+.|++.||++++++++.+++.+. +.+.. ..+|. ++++++|+||||+|.+|+... . ..+
T Consensus 271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~------~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~ 344 (502)
T 4g6h_A 271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ------LLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIP 344 (502)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEECSSE------EEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSG
T ss_pred CHHHHHHHHHHHHhcceeeecCceEEEEeCCc------eEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhcc
Confidence 45566777899999999999999997653 33332 22332 367999999999999998432 2 224
Q ss_pred eeccCCCCEEeCCCccccCCCceEEccccCCCc-chhhhhhhchHHHHHHHHHHHHh
Q 009224 348 VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE-WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 348 ~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
...+.+|+|.||++++.+++|||||+|||+..+ ++.+..|..||+.+|.||.+..+
T Consensus 345 ~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~~~ 401 (502)
T 4g6h_A 345 EQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKMAQ 401 (502)
T ss_dssp GGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 556788999999999556899999999998643 47889999999999999987543
No 64
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=100.00 E-value=1e-35 Score=307.88 Aligned_cols=314 Identities=18% Similarity=0.197 Sum_probs=228.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+||+|||||+||++||..|++. |++|+|||+++..++.+..+.. ...+. .....++..+..+.+++.++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~gv~~ 73 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQL-----YLEGK--VKDVNSVRYMTGEKMESRGVNV 73 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHH-----HHTTS--SCCGGGSBSCCHHHHHHTTCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchh-----hhcCc--cCCHHHhhcCCHHHHHHCCCEE
Confidence 4899999999999999999998 9999999998763322211100 00010 0112222333445667789999
Q ss_pred EEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCC--CCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPL--FKGQ 241 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~--~~~k 241 (540)
+.+ .++.++.+++.+.+.. ++. ++.||+||+|||++|..|++||.+. ..+......... ... ..++
T Consensus 74 ~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~---~~v~~~~~~~~~~~l~~~~~~~~~~ 150 (447)
T 1nhp_A 74 FSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDL---DNIYLMRGRQWAIKLKQKTVDPEVN 150 (447)
T ss_dssp EETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTS---BSEECCCHHHHHHHHHHHHTCTTCC
T ss_pred EECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCC---CCeEEECCHHHHHHHHHHhhhcCCC
Confidence 766 7888998888888875 233 4899999999999999999998752 112221111100 001 1589
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILL 315 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~ 315 (540)
+++|||+|++|+|+|..|++.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..+ +++..+.+
T Consensus 151 ~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~ 228 (447)
T 1nhp_A 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVT 228 (447)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE
Confidence 999999999999999999999999999999887644 2345556678899999999999999875 23333332
Q ss_pred EEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhh
Q 009224 316 RKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVT 386 (540)
Q Consensus 316 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~ 386 (540)
++ .++++|.||+|+|++|++.++...++++.+|+|.||+++ +|+.|+|||+|||+..+ +..+..
T Consensus 229 ----~~--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~-~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~ 301 (447)
T 1nhp_A 229 ----DK--NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYM-RTSEPDVFAVGDATLIKYNPADTEVNIALATN 301 (447)
T ss_dssp ----SS--CEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred ----CC--CEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccc-cCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence 12 469999999999999999887655777888999999998 89999999999999732 246789
Q ss_pred hhchHHHHHHHHHHHHhc-Cc---c-eeeecCCCccCCCCcCCCCCCC
Q 009224 387 AAGSGCIAALSVERYLVN-NN---L-LIEFHQPQAEEPKKDLTDRDVQ 429 (540)
Q Consensus 387 A~~~g~~aa~~i~~~l~~-~~---~-~~~~~~~~~~~~~v~~~~~~~~ 429 (540)
|..||+.||.+|...-.. .. . ...|+.|+++. +|+++.+++
T Consensus 302 A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~a~ 347 (447)
T 1nhp_A 302 ARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFAS--TGINEVMAQ 347 (447)
T ss_dssp HHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEE--ecCCHHHHH
Confidence 999999999998642100 00 1 14477788888 888876654
No 65
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=100.00 E-value=1.4e-35 Score=309.37 Aligned_cols=315 Identities=19% Similarity=0.275 Sum_probs=228.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH-HHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA-ERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 170 (540)
++||+|||||+||+++|..|++. |++|+|||+.+..++....+.. ...+. .....++..+..+.+ ++.++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~-----~~~~~--~~~~~~l~~~~~~~~~~~~gv 108 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPY-----VISGA--IASTEKLIARNVKTFRDKYGI 108 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHH-----HHTTS--SSCGGGGBSSCHHHHHHTTCC
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcch-----hhcCC--cCCHHHhhhcCHHHHHhhcCC
Confidence 47999999999999999999997 8999999997763211110000 00010 011223322233344 44599
Q ss_pred EEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC------CCC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP------LFK 239 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~------~~~ 239 (540)
+++.+ +|+.++.+++.+.+.. ++. .+.||+||+|||++|+.|++||.+. ..+..+...+.... ...
T Consensus 109 ~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~---~~v~~~~~~~~~~~l~~~~~~~~ 185 (480)
T 3cgb_A 109 DAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDL---QGVHLLKTIPDAERILKTLETNK 185 (480)
T ss_dssp EEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTS---BTEECCSSHHHHHHHHHHHHSSC
T ss_pred EEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccC---CCEEEeCCHHHHHHHHHHhhhcC
Confidence 99885 8899998888888875 244 7999999999999999999998753 11222111111000 016
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..++ ++..+.
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~v~~v~ 263 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVE 263 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--BEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCC--cEEEEE
Confidence 89999999999999999999999999999999887654 23445556788899999999999998753 333333
Q ss_pred EEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhh
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQA 384 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~ 384 (540)
+ +. .++++|.||+|+|++|++.++.. +++++++|+|.||+++ +|+.|+|||+|||+..+ +..+
T Consensus 264 ~-----~~-~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~-~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~ 336 (480)
T 3cgb_A 264 T-----DK-GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYM-QTNVQDVYAAGDCATHYHVIKEIHDHIPIG 336 (480)
T ss_dssp E-----TT-EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTS-BCSSTTEEECGGGBCEEBTTTCSEECCCCH
T ss_pred E-----CC-CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCc-cCCCCCEEEeeeEEEecCCCCCcceecchH
Confidence 2 12 36999999999999999987754 6888889999999998 89999999999999632 1357
Q ss_pred hhhhchHHHHHHHHHHHHhc-Cc----ceeeecCCCccCCCCcCCCCCCC
Q 009224 385 VTAAGSGCIAALSVERYLVN-NN----LLIEFHQPQAEEPKKDLTDRDVQ 429 (540)
Q Consensus 385 ~~A~~~g~~aa~~i~~~l~~-~~----~~~~~~~~~~~~~~v~~~~~~~~ 429 (540)
..|..||+.||.+|...... .. ....|+.|+++. +|+++.+++
T Consensus 337 ~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~a~ 384 (480)
T 3cgb_A 337 TTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLAR--TGLNEKEAK 384 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEE--eCCCHHHHH
Confidence 89999999999999642110 01 124588889988 999987665
No 66
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=100.00 E-value=8.1e-36 Score=304.86 Aligned_cols=284 Identities=21% Similarity=0.273 Sum_probs=211.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc--eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLK--PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~--v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++|+|||||+||++||..|++.|++ |+|||+++..++....+.. .. ..+. ....++ ....+.+++.++++
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~--~~--~~g~---~~~~~~-~~~~~~~~~~~i~~ 74 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSK--AV--LDGS---LERPPI-LAEADWYGEARIDM 74 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGT--HH--HHTS---SSSCCB-SSCTTHHHHTTCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccH--HH--hCCC---CCHHHh-cCCHHHHHHCCCEE
Confidence 5899999999999999999999987 9999997763221111100 00 0000 000111 12234566789999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC---C-CCCCCCCEEEEEe
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG---A-SPLFKGQVLAVVG 247 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~---~-~~~~~~k~v~VvG 247 (540)
+.+ +|+.++...+.+.+. ++..+.||+||+|||+.|+.|++||.+. ..+........ . .....+++++|||
T Consensus 75 ~~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~p~~~~ipG~~~---~~v~~~~~~~d~~~l~~~~~~~~~vvViG 150 (410)
T 3ef6_A 75 LTGPEVTALDVQTRTISLD-DGTTLSADAIVIATGSRARTMALPGSQL---PGVVTLRTYGDVQVLRDSWTSATRLLIVG 150 (410)
T ss_dssp EESCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCCCTTTTS---TTEECCCSHHHHHHHHHHCCTTCEEEEEC
T ss_pred EeCCEEEEEECCCCEEEEC-CCCEEECCEEEEccCCcccCCCCCCccc---cceEEeccHHHHHHHHHHhccCCeEEEEC
Confidence 999 999999887766654 6678999999999999999999998652 12222111110 0 0224589999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG 321 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g 321 (540)
+|++|+|+|..|.+.|.+|+++++.+.+.+ ..+.+.+.+++.||++++++.+.++..++ ++..+.+.
T Consensus 151 gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~~~v~~~----- 223 (410)
T 3ef6_A 151 GGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEG--QLEQVMAS----- 223 (410)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSS--SCCEEEET-----
T ss_pred CCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccC--cEEEEEEC-----
Confidence 999999999999999999999999987653 34555666788899999999999998754 34456552
Q ss_pred ceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc--------hhhhhhhchHH
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW--------RQAVTAAGSGC 392 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~--------~~~~~A~~~g~ 392 (540)
++++++||.||+|+|++|++.++.. +++.+ + ++.||+++ +|+.|+|||+|||+..+. ..+..|..||+
T Consensus 224 dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~-gi~vd~~~-~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~ 300 (410)
T 3ef6_A 224 DGRSFVADSALICVGAEPADQLARQAGLACD-R-GVIVDHCG-ATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAA 300 (410)
T ss_dssp TSCEEECSEEEECSCEEECCHHHHHTTCCBS-S-SEECCTTS-BCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHH
T ss_pred CCCEEEcCEEEEeeCCeecHHHHHhCCCccC-C-eEEEccCe-eECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHH
Confidence 2457999999999999999987753 56666 4 49999999 899999999999997532 23789999999
Q ss_pred HHHHHHHH
Q 009224 393 IAALSVER 400 (540)
Q Consensus 393 ~aa~~i~~ 400 (540)
.||.+|..
T Consensus 301 ~aa~~i~g 308 (410)
T 3ef6_A 301 AVAAAILG 308 (410)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999963
No 67
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=100.00 E-value=9.9e-35 Score=311.28 Aligned_cols=324 Identities=19% Similarity=0.224 Sum_probs=227.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC---C--CCCcceeeccCc------------------cccCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA---G--GVPGGQLMTTTE------------------VENFPGF 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~---~--~~~gg~~~~~~~------------------~~~~~~~ 148 (540)
...+||+||||||||++||..|++.|++|+|||+... + ...||.+..... ...+ ++
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~-g~ 183 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF-GW 183 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC-Cc
Confidence 4568999999999999999999999999999997321 1 025554322110 0000 11
Q ss_pred --C---CCCChHHHHHHHHH-----------HHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCC
Q 009224 149 --P---DGITGPDLMDRMRR-----------QAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 149 --~---~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~ 209 (540)
+ ......++.+++.. .++..+++++.+.+..++. ..+.+.. ++ ..+.||+||||||++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~--~~v~v~~~~g~~~~~~~d~lviAtGs~p 261 (598)
T 2x8g_A 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP 261 (598)
T ss_dssp CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET--TEEEEECTTCCEEEEEEEEEEECCCEEE
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEEeCCCCeEEEEeCEEEEeCCCCC
Confidence 1 12344445444332 2456689998887776653 3445543 33 4689999999999999
Q ss_pred CCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHH
Q 009224 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDR 284 (540)
Q Consensus 210 ~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~ 284 (540)
+.|++||.+.+. +.... ... ....+++++|||+|++|+|+|..|++.|.+|++++|. .+++ ....+.+
T Consensus 262 ~~p~i~G~~~~~---~~~~~-~~~--~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~ 334 (598)
T 2x8g_A 262 KYPEIPGAVEYG---ITSDD-LFS--LPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGD 334 (598)
T ss_dssp CCCSSTTHHHHC---EEHHH-HTT--CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHH
T ss_pred CCCCCCCcccce---EcHHH-Hhh--CccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHH
Confidence 999999975431 11111 111 1135788999999999999999999999999999997 3322 2344555
Q ss_pred HhcCCCeEEEeCceEEEEeeC-----CC---CceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCC
Q 009224 285 VFNNPNITVHFNTETVDVVSN-----TK---GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSS 353 (540)
Q Consensus 285 ~l~~~gv~~~~~~~v~~i~~~-----~~---g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~ 353 (540)
.+++.||++++++.+.++... .. +.+. +.+.. .+|+...+++|.||+|+|++|++.++. .+++++++
T Consensus 335 ~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~-~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~ 412 (598)
T 2x8g_A 335 YMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY-TDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKN 412 (598)
T ss_dssp HHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE-TTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTT
T ss_pred HHHhCCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe-CCCcEEeccCCEEEEEeCCccccCccCchhcCceECCC
Confidence 677889999999988888542 11 2221 22222 345555567999999999999998642 36788889
Q ss_pred CCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc----Cc-ceeeecCCCccCCCCcCCCCCC
Q 009224 354 GYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NN-LLIEFHQPQAEEPKKDLTDRDV 428 (540)
Q Consensus 354 g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~-~~~~~~~~~~~~~~v~~~~~~~ 428 (540)
|+|.||+++ +|+.|+|||+|||+...+..+..|+.+|+.||.+|...... .. ....|+.|++++ ||++++++
T Consensus 413 G~i~vd~~~-~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~--vGl~e~~a 489 (598)
T 2x8g_A 413 GRVVCTDDE-QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGA--CGLSEEDA 489 (598)
T ss_dssp SCBCCCTTS-BCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEE--EECCHHHH
T ss_pred CcEEeCCCC-cCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEE--EeCCHHHH
Confidence 999999998 89999999999996543478899999999999999753211 11 225689999999 99998877
Q ss_pred CC
Q 009224 429 QE 430 (540)
Q Consensus 429 ~~ 430 (540)
.+
T Consensus 490 ~~ 491 (598)
T 2x8g_A 490 IE 491 (598)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 68
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=100.00 E-value=3.8e-35 Score=299.56 Aligned_cols=285 Identities=18% Similarity=0.244 Sum_probs=213.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++|+|||||+||++||..|++.|+ +|+|||+++..++....+. .. .+.+ .....++..+....+.+.++++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~--~~--~l~~---~~~~~~~~~~~~~~~~~~~i~~ 74 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLS--KA--YLKS---GGDPNSLMFRPEKFFQDQAIEL 74 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGG--TG--GGGS---CCCTTSSBSSCHHHHHHTTEEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCC--HH--HHCC---CCCHHHccCCCHHHHHhCCCEE
Confidence 689999999999999999999998 8999999775221111110 00 0001 0111222223445667789999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEEeC
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVVGG 248 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~VvG~ 248 (540)
+..+|+.++.+.+.+.+. ++..+.||+||+|||+.|+.|++||.+. ..+......+.. .....+++++|||+
T Consensus 75 ~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~p~~~~i~g~~~---~~v~~~~~~~d~~~l~~~~~~~~~vvViGg 150 (404)
T 3fg2_P 75 ISDRMVSIDREGRKLLLA-SGTAIEYGHLVLATGARNRMLDVPNASL---PDVLYLRTLDESEVLRQRMPDKKHVVVIGA 150 (404)
T ss_dssp ECCCEEEEETTTTEEEES-SSCEEECSEEEECCCEEECCCCSTTTTS---TTEECCSSHHHHHHHHHHGGGCSEEEEECC
T ss_pred EEEEEEEEECCCCEEEEC-CCCEEECCEEEEeeCCCccCCCCCCCCC---CcEEEECCHHHHHHHHHHhhcCCeEEEECC
Confidence 889999999888776665 6678999999999999999999998653 112211111100 11235899999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE 322 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~ 322 (540)
|.+|+|+|..+.+.|.+|+++++.+.+.+ ..+.+.+.+++.||++++++.+.++..++ +++.++.+. +
T Consensus 151 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~V~~~-----d 224 (404)
T 3fg2_P 151 GFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEG-DRVTGVVLS-----D 224 (404)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEET-----T
T ss_pred CHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecC-CcEEEEEeC-----C
Confidence 99999999999999999999999887654 34555666788999999999999998764 445555552 2
Q ss_pred eEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhhchHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAAGSGC 392 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~~g~ 392 (540)
+++++||.||+|+|++|++.++.. ++..+ +| |.||+++ +|+.|+|||+|||+..+. ..+..|..||+
T Consensus 225 G~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~G-i~vd~~~-~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~ 301 (404)
T 3fg2_P 225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AG-IIVDQQL-LTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR 301 (404)
T ss_dssp SCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EEECTTS-BCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHH
T ss_pred CCEEEcCEEEECcCCccCHHHHHhCCCCCC-CC-EEECCCc-ccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHH
Confidence 357999999999999999987753 66666 45 9999998 899999999999997532 13688999999
Q ss_pred HHHHHHH
Q 009224 393 IAALSVE 399 (540)
Q Consensus 393 ~aa~~i~ 399 (540)
.||.+|.
T Consensus 302 ~aa~~i~ 308 (404)
T 3fg2_P 302 CVAARLT 308 (404)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999985
No 69
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=100.00 E-value=3.7e-34 Score=290.35 Aligned_cols=284 Identities=17% Similarity=0.237 Sum_probs=207.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHH-HHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMD-RMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v 170 (540)
.+||+|||||+||++||..|++.| .+|+|+|++. ++.+...+. .. .++......++.. .+...+++.++
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~-g~~~~~~~l----~~---~~~~~~~~~~~~~~~~~~~~~~~~v 75 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD-GRSYSKPML----ST---GFSKNKDADGLAMAEPGAMAEQLNA 75 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC-CCEECGGGG----GG---TTTTTCCHHHHEEECHHHHHHHTTC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC-CCccCcccc----cH---HHhCCCCHHHhhccCHHHHHHhCCc
Confidence 489999999999999999999998 5689999864 221111111 11 1122233444433 34556678899
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccc---ccCCCeeeeeecCCCCCCCCCCEEEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE---FWSRGISACAICDGASPLFKGQVLAVV 246 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~---~~~~~~~~~~~~~~~~~~~~~k~v~Vv 246 (540)
+++.+ +|+.++.+++.+.+ ++..+.||+||+|||+.|..|++||.+. +....+....... ..+..+++++||
T Consensus 76 ~~~~~~~v~~i~~~~~~v~~--~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~--~~~~~~~~v~Vi 151 (384)
T 2v3a_A 76 RILTHTRVTGIDPGHQRIWI--GEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFR--QAAAGKRRVLLL 151 (384)
T ss_dssp EEECSCCCCEEEGGGTEEEE--TTEEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHH--HHHTTCCEEEEE
T ss_pred EEEeCCEEEEEECCCCEEEE--CCcEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHH--HhhccCCeEEEE
Confidence 99876 78889877665544 5678999999999999999999998642 1111111110000 012348999999
Q ss_pred eCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC
Q 009224 247 GGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320 (540)
Q Consensus 247 G~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~ 320 (540)
|+|.+|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..+++ .+.+.. .
T Consensus 152 GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~----~~~v~~-~- 225 (384)
T 2v3a_A 152 GAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE----GLEAHL-S- 225 (384)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT----EEEEEE-T-
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC----EEEEEE-C-
Confidence 9999999999999999999999999887654 234556667889999999999999987643 133322 2
Q ss_pred CceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAAL 396 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~ 396 (540)
+++++++|.||+|+|++|+++++. .+++++ +| |.||+++ +|+.|+|||+|||+.. ....+..|..||+.+|.
T Consensus 226 -~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~-~g-i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~ 301 (384)
T 2v3a_A 226 -DGEVIPCDLVVSAVGLRPRTELAFAAGLAVN-RG-IVVDRSL-RTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQ 301 (384)
T ss_dssp -TSCEEEESEEEECSCEEECCHHHHHTTCCBS-SS-EEECTTC-BCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHH
T ss_pred -CCCEEECCEEEECcCCCcCHHHHHHCCCCCC-CC-EEECCCC-CCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHH
Confidence 235699999999999999998764 367776 57 9999998 8999999999999852 23356778999999999
Q ss_pred HHH
Q 009224 397 SVE 399 (540)
Q Consensus 397 ~i~ 399 (540)
+|.
T Consensus 302 ~i~ 304 (384)
T 2v3a_A 302 TLA 304 (384)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
No 70
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=100.00 E-value=1.8e-34 Score=296.48 Aligned_cols=290 Identities=19% Similarity=0.217 Sum_probs=209.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.+||+|||||+||+++|..|++.|+ +|+|||+.+..++.. ......+.. ......++.....+.+++.+++
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~-----~~l~~~~~~--~~~~~~~~~~~~~~~~~~~gv~ 76 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL-----PPLSKAYLA--GKATAESLYLRTPDAYAAQNIQ 76 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS-----GGGGTTTTT--TCSCSGGGBSSCHHHHHHTTEE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcC-----CCCcHHHhC--CCCChHHhcccCHHHHHhCCCE
Confidence 4799999999999999999999998 799999875421110 000000100 0011112211223456778999
Q ss_pred EEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVV 246 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~Vv 246 (540)
++.+ +|+.++.+++.+.+. ++..+.||+||+|||++|+.|++||.+......+......+.. ..+..+++++||
T Consensus 77 ~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvVi 155 (431)
T 1q1r_A 77 LLGGTQVTAINRDRQQVILS-DGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVI 155 (431)
T ss_dssp EECSCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEE
T ss_pred EEeCCEEEEEECCCCEEEEC-CCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEE
Confidence 9987 789999877655553 5678999999999999999998988652110112221111110 112358999999
Q ss_pred eCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeC-CCCceeeEEEEEcc
Q 009224 247 GGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSN-TKGQMSGILLRKVD 319 (540)
Q Consensus 247 G~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~g~~~~v~~~~~~ 319 (540)
|+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+ .++++..+.+.
T Consensus 156 GgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~--- 232 (431)
T 1q1r_A 156 GGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE--- 232 (431)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEET---
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeC---
Confidence 9999999999999999999999999887643 2344555677889999999999999862 23445445542
Q ss_pred CCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhhc
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAAG 389 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~ 389 (540)
+++++++|.||+|+|++|+++++.. +++++ +| |.||+++ +|+.|+|||+|||+..+. ..+..|..
T Consensus 233 --~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~-~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~ 307 (431)
T 1q1r_A 233 --DGTRLPADLVIAGIGLIPNCELASAAGLQVD-NG-IVINEHM-QTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALE 307 (431)
T ss_dssp --TSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EECCTTS-BCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHH
T ss_pred --CCCEEEcCEEEECCCCCcCcchhhccCCCCC-CC-EEECCCc-ccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHH
Confidence 2356999999999999999987753 56665 44 9999998 899999999999998532 14678999
Q ss_pred hHHHHHHHHH
Q 009224 390 SGCIAALSVE 399 (540)
Q Consensus 390 ~g~~aa~~i~ 399 (540)
||+.||.+|.
T Consensus 308 qg~~aa~~i~ 317 (431)
T 1q1r_A 308 QARKIAAILC 317 (431)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 71
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=100.00 E-value=2.3e-34 Score=293.77 Aligned_cols=278 Identities=19% Similarity=0.220 Sum_probs=204.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+||+|||||+||+++|..|++.|+ +|+|||+++..++....+ .... ..+. . ..++ ++. .+++.++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~--~~~~--~~~~---~-~~~~--~~~-~~~~~~v 74 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPL--SKDF--MAHG---D-AEKI--RLD-CKRAPEV 74 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGG--GTHH--HHHC---C-GGGS--BCC-CTTSCSC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCC--CHHH--hCCC---c-hhhh--hHH-HHHHCCC
Confidence 35799999999999999999999998 599999876522110000 0000 0000 0 0000 001 3456789
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC-CCcccccCCCeeeeeecCC----CCCCCCCCEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL-PREDEFWSRGISACAICDG----ASPLFKGQVLA 244 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i-pg~~~~~~~~~~~~~~~~~----~~~~~~~k~v~ 244 (540)
+++.+ +|+.++.+.+.+.+. ++..+.||+||+|||++|+.|++ ||.+ ..+..+...+. ...+..+++++
T Consensus 75 ~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~i~~G~~----~~v~~~~~~~~~~~l~~~~~~~~~vv 149 (408)
T 2gqw_A 75 EWLLGVTAQSFDPQAHTVALS-DGRTLPYGTLVLATGAAPRALPTLQGAT----MPVHTLRTLEDARRIQAGLRPQSRLL 149 (408)
T ss_dssp EEEETCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCGGGTTCS----SCEEECCSHHHHHHHHTTCCTTCEEE
T ss_pred EEEcCCEEEEEECCCCEEEEC-CCCEEECCEEEECCCCCCCCCCccCCCC----CcEEEECCHHHHHHHHHHhhcCCeEE
Confidence 99998 599999876655553 56689999999999999999888 8865 12222211111 01123589999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
|||+|.+|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++. ++ .+.+.
T Consensus 150 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~-----~v~~~-- 221 (408)
T 2gqw_A 150 IVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DG-----VVLLD-- 221 (408)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TT-----EEEET--
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CC-----EEEEC--
Confidence 999999999999999999999999999887654 24455666788999999999999998 32 35542
Q ss_pred cCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhh
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAA 388 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~ 388 (540)
+++++++|.||+|+|++|++.++.. +++++ +| |.||+++ +|+.|+|||+|||+..+. ..+..|.
T Consensus 222 ---~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 295 (408)
T 2gqw_A 222 ---DGTRIAADMVVVGIGVLANDALARAAGLACD-DG-IFVDAYG-RTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQ 295 (408)
T ss_dssp ---TSCEEECSEEEECSCEEECCHHHHHHTCCBS-SS-EECCTTC-BCSSTTEEECGGGEEEEETTTTEEECCCCHHHHH
T ss_pred ---CCCEEEcCEEEECcCCCccHHHHHhCCCCCC-CC-EEECCCC-ccCCCCEEEEEEEEEecCccCCceeeccHHHHHH
Confidence 2357999999999999999987753 56665 45 9999998 899999999999998531 2567899
Q ss_pred chHHHHHHHHHH
Q 009224 389 GSGCIAALSVER 400 (540)
Q Consensus 389 ~~g~~aa~~i~~ 400 (540)
.||+.||.+|..
T Consensus 296 ~~g~~aa~~i~g 307 (408)
T 2gqw_A 296 NQGIAVARHLVD 307 (408)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999974
No 72
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-32 Score=277.25 Aligned_cols=291 Identities=18% Similarity=0.200 Sum_probs=209.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccC---------ccccCCCC---------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTT---------EVENFPGF--------------- 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~---------~~~~~~~~--------------- 148 (540)
.+||+|||||+||+++|..|++.|+ +|+|||+.+ +|+.+.... ......++
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~----~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT----VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFT 79 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS----TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC----CCCccccCcccccccCcchhcccCCchhhhhcccccccccc
Confidence 4799999999999999999999999 999999876 333332110 00000111
Q ss_pred --CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCe
Q 009224 149 --PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGI 225 (540)
Q Consensus 149 --~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~ 225 (540)
.......++..++...+++.+++++.+ +|+.++.+++.+.|...+..+.||+||+|||+.+. |.+|+ . ..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~-p~ip~-~----~~~ 153 (369)
T 3d1c_A 80 FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF-PKKPF-K----YGI 153 (369)
T ss_dssp HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS-BCCCS-S----SCE
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc-cCCCC-C----cee
Confidence 112344667788888889999999887 79999988778888775557999999999999865 56666 1 122
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------cHHHHHHHhcCCC-eE
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------SRAMQDRVFNNPN-IT 292 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------~~~~~~~~l~~~g-v~ 292 (540)
+....... ...++++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ..+.+.+.+++.| |+
T Consensus 154 ~~~~~~~~--~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~ 231 (369)
T 3d1c_A 154 HYSEIEDF--DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIE 231 (369)
T ss_dssp EGGGCSCG--GGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEE
T ss_pred chhhcCCh--hhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEE
Confidence 22222111 123578999999999999999999999999999999876542 1245566677886 99
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceE
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++++.+.++..+++ ...+.+ .+|+ ....+|.+|+|+|++|++.++.. .++ +++|++.+|+.+++|+.|+||
T Consensus 232 ~~~~~~v~~i~~~~~--~~~v~~---~~g~-~~~~~d~vi~a~G~~~~~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~ 304 (369)
T 3d1c_A 232 MNVHYTVKDIDFNNG--QYHISF---DSGQ-SVHTPHEPILATGFDATKNPIVQQLFV-TTNQDIKLTTHDESTRYPNIF 304 (369)
T ss_dssp EECSCCEEEEEEETT--EEEEEE---SSSC-CEEESSCCEECCCBCGGGSHHHHHHSC-CTTSCCCBCTTSBBSSSTTEE
T ss_pred EecCcEEEEEEecCC--ceEEEe---cCCe-EeccCCceEEeeccCCccchhhhhhcc-CCCCCEEechhhcccCCCCeE
Confidence 999999999975433 112333 2343 23357999999999999965543 455 778999999987789999999
Q ss_pred EccccCCCc---chhhhhhhchHHHHHHHHHHHHh
Q 009224 372 AAGDVQDHE---WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 372 a~GD~~~~~---~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
|+|||+..+ ...+..+..+|+.+|.++...+.
T Consensus 305 a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~ 339 (369)
T 3d1c_A 305 MIGATVENDNAKLCYIYKFRARFAVLAHLLTQREG 339 (369)
T ss_dssp ECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTT
T ss_pred EeccccccCCeeEEEEehhhHHHHHHHHHHhcccC
Confidence 999998742 22344667789999999877654
No 73
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=100.00 E-value=2.2e-34 Score=296.83 Aligned_cols=298 Identities=19% Similarity=0.189 Sum_probs=218.2
Q ss_pred cccEEEECCCHHHHHHHHHHHH---cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR---ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~---~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
++||+|||||+||+++|..|++ .|++|+|||+.+. +.+......+. .......++...+.+.+++.|+
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~-------~~~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~gv 74 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY-------FQFVPSNPWVG--VGWKERDDIAFPIRHYVERKGI 74 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE-------EECGGGHHHHH--HTSSCHHHHEEECHHHHHTTTC
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC-------CcccCCccccc--cCccCHHHHHHHHHHHHHHCCC
Confidence 5799999999999999999999 7999999998664 11111000000 0123445666667778888999
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC------CCCCCCCCEEE
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG------ASPLFKGQVLA 244 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~------~~~~~~~k~v~ 244 (540)
+++.++|+.++.+++.+++. ++..+.||+||+|||+.|+.+.+||.+.........+...+. ......+++++
T Consensus 75 ~~~~~~v~~id~~~~~V~~~-~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~v 153 (437)
T 3sx6_A 75 HFIAQSAEQIDAEAQNITLA-DGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPI 153 (437)
T ss_dssp EEECSCEEEEETTTTEEEET-TSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeEEEEEEcCCCEEEEC-CCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEE
Confidence 99999999999887766554 567799999999999999999999976532111111111100 00011245678
Q ss_pred EEeCCccH------HHHH----HHHHhcCCe-----EEEEEeccccc--------ccHHHHHHHhcCCCeEEEeCceEEE
Q 009224 245 VVGGGDTA------TEEA----IYLTKFARH-----VHLLVRREQLR--------ASRAMQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 245 VvG~G~~a------~e~a----~~l~~~g~~-----v~li~~~~~~~--------~~~~~~~~~l~~~gv~~~~~~~v~~ 301 (540)
|||+|+.+ +|+| ..+.+.|.+ |+++++.+.+. .....+.+.+++.||++++++.+.+
T Consensus 154 VVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~ 233 (437)
T 3sx6_A 154 VIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTK 233 (437)
T ss_dssp EEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred EEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 99986654 8877 555666764 99999988651 2455667778899999999999999
Q ss_pred EeeCCCCceeeEEEEEcc-CCc---eEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 302 VVSNTKGQMSGILLRKVD-TGE---ESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~-~g~---~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
++.+ ++.+.+.. ++. +.++++|.+++++|++++..+.. .++ .+++|+|.||++++.+++|||||+|||
T Consensus 234 v~~~------~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~ 306 (437)
T 3sx6_A 234 VEDN------KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIA 306 (437)
T ss_dssp EETT------EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGG
T ss_pred EECC------eEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcEEeChhccCCCCCCEEEEEEE
Confidence 9765 25554422 232 67899999999999998866554 345 688899999999844499999999999
Q ss_pred CCCc-----------chhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 377 QDHE-----------WRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 377 ~~~~-----------~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
+..+ ++.+..|..||+.||.+|.+.|.++...
T Consensus 307 ~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~ 349 (437)
T 3sx6_A 307 IAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGE 349 (437)
T ss_dssp BCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred eccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9742 4688999999999999999999988664
No 74
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=100.00 E-value=6.4e-34 Score=293.69 Aligned_cols=291 Identities=19% Similarity=0.250 Sum_probs=215.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+||+|||||+||+++|..|++.| ++|+|||+.+. ++|.+.... .|.+....++..++.+.+++.++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~---~gg~~~~g~-------~p~~~~~~~~~~~~~~~~~~~gv 74 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV---PFGLVRFGV-------APDHPEVKNVINTFTQTARSDRC 74 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS---SCTHHHHTS-------CTTCGGGGGHHHHHHHHHTSTTE
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc---CCceeeccc-------CCCCccHHHHHHHHHHHHHhCCc
Confidence 3479999999999999999999998 99999999887 777664321 12223445677888888888999
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeeeec----------CCCCCCCC
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACAIC----------DGASPLFK 239 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~~~----------~~~~~~~~ 239 (540)
+++.+... ++.+++. ...+.||+||+|||+.+ +.|++||.+. .++..+... ........
T Consensus 75 ~~~~~~~v-----~~~V~~~--~~~~~~d~lVlAtGs~~~~~~~ipG~~~---~gv~~~~~~~~~~~~~~d~~~~~~~~~ 144 (460)
T 1cjc_A 75 AFYGNVEV-----GRDVTVQ--ELQDAYHAVVLSYGAEDHQALDIPGEEL---PGVFSARAFVGWYNGLPENRELAPDLS 144 (460)
T ss_dssp EEEBSCCB-----TTTBCHH--HHHHHSSEEEECCCCCEECCCCCTTTTS---TTEEEHHHHHHHHTTCGGGTTCCCCTT
T ss_pred EEEeeeEE-----eeEEEec--cceEEcCEEEEecCcCCCCCCCCCCCCC---CcEEEHHHHHHHhhcCccccccccCCC
Confidence 99887332 1223222 23468999999999995 7789999752 223332111 11111236
Q ss_pred CCEEEEEeCCccHHHHHHHHH--------------------hcCC-eEEEEEeccccc--------------c-------
Q 009224 240 GQVLAVVGGGDTATEEAIYLT--------------------KFAR-HVHLLVRREQLR--------------A------- 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~--------------------~~g~-~v~li~~~~~~~--------------~------- 277 (540)
+++|+|||+|++|+|+|..|. +.+. +|+++.|++.+. +
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~ 224 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLD 224 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEec
Confidence 899999999999999999998 5676 799999987541 1
Q ss_pred --------------------cHHHHHHHhcC--------------CCeEEEeCceEEEEeeCCCC-ceeeEEEEEcc---
Q 009224 278 --------------------SRAMQDRVFNN--------------PNITVHFNTETVDVVSNTKG-QMSGILLRKVD--- 319 (540)
Q Consensus 278 --------------------~~~~~~~~l~~--------------~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~~--- 319 (540)
..+++.+.+++ .||+++++..+.++..++++ ++.++.+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~ 304 (460)
T 1cjc_A 225 PADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEG 304 (460)
T ss_dssp GGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEES
T ss_pred hhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEcc
Confidence 00112222334 78999999999999876545 67777775421
Q ss_pred ---------CCceEEEEccEEEEecccccCccccccce-eccCCCCEEeCCCccccC-CCceEEccccCCCcchhhhhhh
Q 009224 320 ---------TGEESVLEAKGLFYGIGHSPNSQLLQGQV-ELDSSGYVIVEEGTAKTS-VEGVFAAGDVQDHEWRQAVTAA 388 (540)
Q Consensus 320 ---------~g~~~~i~~D~vi~a~G~~p~~~~~~~~~-~~~~~g~i~vd~~~~~t~-~~~iya~GD~~~~~~~~~~~A~ 388 (540)
+|+.++++||+||+++|++|++ + .++ +++++|++.+|+++ +|+ .|+|||+|||+..+...+..|+
T Consensus 305 ~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~~~-rt~~~p~vya~Gd~~~g~~~~i~~a~ 380 (460)
T 1cjc_A 305 IGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNMEG-RVVDVPGLYCSGWVKRGPTGVITTTM 380 (460)
T ss_dssp SGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEETT-EETTCTTEEECTHHHHCTTCCHHHHH
T ss_pred ccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECCCC-cCcCCCCEEEEEeCCcCCCccHHHHH
Confidence 2445789999999999999998 3 466 88888999999998 777 7999999999976444567899
Q ss_pred chHHHHHHHHHHHHhcCcc
Q 009224 389 GSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 389 ~~g~~aa~~i~~~l~~~~~ 407 (540)
.+|+.+|.+|...+.+..+
T Consensus 381 ~~g~~aa~~i~~~l~~~~~ 399 (460)
T 1cjc_A 381 TDSFLTGQILLQDLKAGHL 399 (460)
T ss_dssp HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999999999877544
No 75
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=100.00 E-value=3e-32 Score=282.34 Aligned_cols=277 Identities=17% Similarity=0.195 Sum_probs=208.9
Q ss_pred ccEEEECCCHHHHHHHHHHHH---cCCc---eEEEcCCCCCCCCcceeeccCcc-------------------------c
Q 009224 95 ENVVIIGSGPAGYTAAIYAAR---ANLK---PVVFEGYQAGGVPGGQLMTTTEV-------------------------E 143 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~---~g~~---v~lie~~~~~~~~gg~~~~~~~~-------------------------~ 143 (540)
+||+|||||+||++||..|++ .|++ |+|||+.+. +||.|.+.... .
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~---~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~ 79 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD---WGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECL 79 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS---SCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC---CCCEeecCCCCCccccCCCCcCccccchhhcCChhhc
Confidence 689999999999999999999 9999 999999876 67776542100 0
Q ss_pred cCCCC----------CCCCChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeCC--cEEEEEC----C--eEEEecEEE
Q 009224 144 NFPGF----------PDGITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKSN--PFTVKSG----E--RKVKCHSIV 202 (540)
Q Consensus 144 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~~--~~~v~~~----~--~~~~~d~lv 202 (540)
.++++ +.+....++.+++..++++++++ ++.+ +|+.++..++ .|.|... + .++.||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VV 159 (464)
T 2xve_A 80 EFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159 (464)
T ss_dssp CBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred ccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEE
Confidence 11121 23455678889999999999987 7655 8999988776 5666542 3 578999999
Q ss_pred EccC--CCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHH
Q 009224 203 FATG--ATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRA 280 (540)
Q Consensus 203 iAtG--~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~ 280 (540)
+||| +.|+.|.+||.+.+.+..++...+.+. ..+.+++|+|||+|.+|+|+|..|++.|.+|+++.+++.+....
T Consensus 160 vAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~- 236 (464)
T 2xve_A 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDA--LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK- 236 (464)
T ss_dssp ECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCG--GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC-
T ss_pred ECCCCCCCCccCCCCCcccCCceEEehhhhCCH--hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC-
Confidence 9999 789999999987665444444433322 22578999999999999999999999999999999987654321
Q ss_pred HHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc--ceeccCCCCEEe
Q 009224 281 MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIV 358 (540)
Q Consensus 281 ~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~v 358 (540)
+ ..||+++ ..|.++..+ +|.+. +| +++++|.||+|+|++|+..++.. ++.++.++++ +
T Consensus 237 -----~-~~~V~~~--~~V~~i~~~------~V~~~---dG--~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~ 296 (464)
T 2xve_A 237 -----W-PENWDER--PNLVRVDTE------NAYFA---DG--SSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-L 296 (464)
T ss_dssp -----C-CTTEEEC--SCEEEECSS------EEEET---TS--CEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-S
T ss_pred -----C-CCceEEc--CCeEEEeCC------EEEEC---CC--CEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-c
Confidence 1 3588887 678888543 35553 23 46899999999999999998864 4666666565 3
Q ss_pred C--CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 359 E--EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 359 d--~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+ ...++++.|+||++||+... .....|..||+.+|.++.
T Consensus 297 ~~~~~~~~t~~p~i~aiGd~~~~--~~~~~a~~qa~~~a~~l~ 337 (464)
T 2xve_A 297 NLYKGVVWEDNPKFFYIGMQDQW--YSFNMFDAQAWYARDVIM 337 (464)
T ss_dssp SEETTTEESSSTTEEECSCSCCS--SCHHHHHHHHHHHHHHHT
T ss_pred cccceEecCCCCCEEEEeCcccc--cchHHHHHHHHHHHHHHc
Confidence 3 33347899999999999875 456777888888887774
No 76
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=100.00 E-value=4e-33 Score=287.46 Aligned_cols=288 Identities=20% Similarity=0.229 Sum_probs=215.1
Q ss_pred cccEEEECCCHHHHHHHHHHHH-c------CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR-A------NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAE 166 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~-~------g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (540)
.+||+|||||+||++||..|++ . |++|+|||+.+. ++|.+.+. -.|.+....++..++.+.++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~---~gg~~~~g-------v~p~~~~~~~~~~~~~~~~~ 72 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT---PWGLVRSG-------VAPDHPKIKSISKQFEKTAE 72 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS---CSTHHHHT-------SCTTCTGGGGGHHHHHHHHT
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC---CCCccccc-------cCCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999 7 999999999877 77776531 12334455677888888888
Q ss_pred HhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCC-CCCCCCCCcccccCCCeeeeee----------c-CCC
Q 009224 167 RWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACAI----------C-DGA 234 (540)
Q Consensus 167 ~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~~----------~-~~~ 234 (540)
+.+++++.+.. + ++.+++. ...+.||+||+|||+. ++.+++||.+. .++..... + ...
T Consensus 73 ~~~v~~~~~v~--v---~~~v~~~--~~~~~~d~lViAtG~~~~~~~~ipG~~~---~gv~~~~~~~~~~~~~~d~~~~~ 142 (456)
T 1lqt_A 73 DPRFRFFGNVV--V---GEHVQPG--ELSERYDAVIYAVGAQSDRMLNIPGEDL---PGSIAAVDFVGWYNAHPHFEQVS 142 (456)
T ss_dssp STTEEEEESCC--B---TTTBCHH--HHHHHSSEEEECCCCCEECCCCCTTTTS---TTEEEHHHHHHHHTTCGGGTTCC
T ss_pred cCCCEEEeeEE--E---CCEEEEC--CCeEeCCEEEEeeCCCCCCCCCCCCCCC---CCcEEHHHHHhhhhcCcccccch
Confidence 88999987722 2 2333332 2247899999999997 78888999762 22222211 0 111
Q ss_pred CCCCCCCEEEEEeCCccHHHHHHHHHhc--------------------C-CeEEEEEeccccccc---------------
Q 009224 235 SPLFKGQVLAVVGGGDTATEEAIYLTKF--------------------A-RHVHLLVRREQLRAS--------------- 278 (540)
Q Consensus 235 ~~~~~~k~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~li~~~~~~~~~--------------- 278 (540)
. ...+++|+|||+|++|+|+|..|.+. + .+|+++.|++.+...
T Consensus 143 ~-~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~ 221 (456)
T 1lqt_A 143 P-DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGV 221 (456)
T ss_dssp C-CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTE
T ss_pred h-hcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCc
Confidence 1 23689999999999999999999874 4 599999998754320
Q ss_pred ---------------------------HHHHHHHhcC------CCeEEEeCceEEEEeeCCCCceeeEEEEEc-------
Q 009224 279 ---------------------------RAMQDRVFNN------PNITVHFNTETVDVVSNTKGQMSGILLRKV------- 318 (540)
Q Consensus 279 ---------------------------~~~~~~~l~~------~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~------- 318 (540)
.+.+.+.+++ .||++++++.+.++..+ +++.++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~ 299 (456)
T 1lqt_A 222 DVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNELVSDGS 299 (456)
T ss_dssp EEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEEEECSS
T ss_pred eeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEecCCCc
Confidence 1222333444 79999999999999875 34666776531
Q ss_pred ------cCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHH
Q 009224 319 ------DTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGC 392 (540)
Q Consensus 319 ------~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~ 392 (540)
.+|+.++++||+||+++|++|++ + .+++++++|++.+|+.++.++.|||||+|||+..+...+..|+.+|+
T Consensus 300 ~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~ 376 (456)
T 1lqt_A 300 GRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQ 376 (456)
T ss_dssp SSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHH
T ss_pred ccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHH
Confidence 12344679999999999999998 3 46778888999999998558999999999998765445678999999
Q ss_pred HHHHHHHHHHhcCcc
Q 009224 393 IAALSVERYLVNNNL 407 (540)
Q Consensus 393 ~aa~~i~~~l~~~~~ 407 (540)
.+|.+|...+.+..+
T Consensus 377 ~~a~~i~~~l~~~~l 391 (456)
T 1lqt_A 377 DTVDTLIKNLGNAKE 391 (456)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999876543
No 77
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=100.00 E-value=8.8e-34 Score=291.50 Aligned_cols=298 Identities=17% Similarity=0.145 Sum_probs=207.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++|||||||+||+++|.+|++.+ ++|||||+++.. .+......+. ......+++...+.+.+++.|+++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~-------~~~p~l~~v~--~g~~~~~~i~~~~~~~~~~~gv~~ 73 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF-------GFTPAFPHLA--MGWRKFEDISVPLAPLLPKFNIEF 73 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE-------ECGGGHHHHH--HTCSCGGGSEEESTTTGGGGTEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC-------ccCccHHHHh--cCCCCHHHhhhcHHHHHHHCCcEE
Confidence 57999999999999999999875 799999986641 1111110000 001222333333445567789999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeeee-cCCCCCCCCCCEEEEEeCC
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACAI-CDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~~-~~~~~~~~~~k~v~VvG~G 249 (540)
+.++|+.||++++.+++. +++++.||+||||||+++. +++||.++.. ...+.+... .+........+.++|+|++
T Consensus 74 i~~~v~~Id~~~~~V~~~-~g~~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~ 151 (430)
T 3hyw_A 74 INEKAESIDPDANTVTTQ-SGKKIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAI 151 (430)
T ss_dssp ECSCEEEEETTTTEEEET-TCCEEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred EEeEEEEEECCCCEEEEC-CCCEEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCC
Confidence 999999999999887765 6788999999999999864 5688865421 111111110 0001111234456666665
Q ss_pred c------cHHHHH----HHHHhcC----CeEEEEEecccccc--------cHHHHHHHhcCCCeEEEeCceEEEEeeCCC
Q 009224 250 D------TATEEA----IYLTKFA----RHVHLLVRREQLRA--------SRAMQDRVFNNPNITVHFNTETVDVVSNTK 307 (540)
Q Consensus 250 ~------~a~e~a----~~l~~~g----~~v~li~~~~~~~~--------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 307 (540)
. .+.|++ ..+.+.+ .+|+++...+.+.. ....+++.++++||++++++.+++++.+.
T Consensus 152 ~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~- 230 (430)
T 3hyw_A 152 PGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK- 230 (430)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE-
T ss_pred CcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc-
Confidence 3 123333 3344444 46888887765432 35567778899999999999999997652
Q ss_pred CceeeEEEEEccCCceEEEEccEEEEecccccCccccccc--eeccCCCCEEeCCCccccCCCceEEccccCCCc-----
Q 009224 308 GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ--VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE----- 380 (540)
Q Consensus 308 g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~--~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~----- 380 (540)
+.+++ .+++++++++|+++|++|++|+..+...+ +..+.+|++.+|++++.+++|||||+|||+..+
T Consensus 231 -----~~~~~-~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~ 304 (430)
T 3hyw_A 231 -----VIYED-LNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKT 304 (430)
T ss_dssp -----EEEEC-TTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCC
T ss_pred -----eEEEe-eCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccC
Confidence 55554 44667889999999999999986555443 344567889999999669999999999999632
Q ss_pred ------chhhhhhhchHHHHHHHHHHHHhcCcceee
Q 009224 381 ------WRQAVTAAGSGCIAALSVERYLVNNNLLIE 410 (540)
Q Consensus 381 ------~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~ 410 (540)
++.+..|..||+.+|.||.+.+.+++....
T Consensus 305 ~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~~~~~ 340 (430)
T 3hyw_A 305 PIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPDKYA 340 (430)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred cCcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 467889999999999999999999876433
No 78
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.98 E-value=3.1e-33 Score=287.84 Aligned_cols=297 Identities=18% Similarity=0.161 Sum_probs=208.4
Q ss_pred ccEEEECCCHHHHHHHHHHHH--cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAAR--ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~--~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+||+|||||+||+++|..|++ .|++|+|||+++. .+...... ....+ .....++...+.+.+++.++++
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~---~~~~~~~~---~~~~g---~~~~~~~~~~~~~~~~~~gv~~ 73 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY---FGFTPAFP---HLAMG---WRKFEDISVPLAPLLPKFNIEF 73 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE---EECGGGHH---HHHHT---CSCGGGSEEESTTTGGGGTEEE
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCC---CCcCCCcc---hhccC---ccCHHHHHHHHHHHHHhcCCEE
Confidence 689999999999999999999 7899999998765 22111000 00001 1222333334445566789999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccc-ccCCCeeeeeec-CCCCCCCCCCEEEEEeCCc
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE-FWSRGISACAIC-DGASPLFKGQVLAVVGGGD 250 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~-~~~~~~~~~~~~-~~~~~~~~~k~v~VvG~G~ 250 (540)
+.++|+.++.+++.+.+. ++..+.||+||+|||+.+..|.+..... ............ +.......+++++|||+|+
T Consensus 74 ~~~~v~~id~~~~~v~~~-~g~~i~~d~liiAtG~~~~~pg~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~ 152 (430)
T 3h28_A 74 INEKAESIDPDANTVTTQ-SGKKIEYDYLVIATGPKLVFGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIP 152 (430)
T ss_dssp ECSCEEEEETTTTEEEET-TCCEEECSEEEECCCCEEECCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECT
T ss_pred EEEEEEEEECCCCEEEEC-CCcEEECCEEEEcCCcccccCCCCCcCCccCcCCHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 999999999887755554 5667999999999999877653321000 001111111000 0000011245678899876
Q ss_pred cH------HHHHH----HHHhcC----CeEEEEEeccccc--------ccHHHHHHHhcCCCeEEEeCceEEEEeeCCCC
Q 009224 251 TA------TEEAI----YLTKFA----RHVHLLVRREQLR--------ASRAMQDRVFNNPNITVHFNTETVDVVSNTKG 308 (540)
Q Consensus 251 ~a------~e~a~----~l~~~g----~~v~li~~~~~~~--------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g 308 (540)
.+ +|+|. .+.+.| .+|+++++.+.+. .....+.+.+++.||++++++.+.+++.+
T Consensus 153 ~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~~~~~l~~~~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--- 229 (430)
T 3h28_A 153 GVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPD--- 229 (430)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSS---
T ss_pred CCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCccccccccCcchHHHHHHHHHHHHCCCEEEeCCEEEEEeCC---
Confidence 54 88774 455566 4799999887652 13556667788999999999999999765
Q ss_pred ceeeEEEEEccCCceEEEEccEEEEecccccCccccc--cceeccCCC-CEEeCCCccccCCCceEEccccCCCc-----
Q 009224 309 QMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ--GQVELDSSG-YVIVEEGTAKTSVEGVFAAGDVQDHE----- 380 (540)
Q Consensus 309 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~--~~~~~~~~g-~i~vd~~~~~t~~~~iya~GD~~~~~----- 380 (540)
++.+++.. ++++++++|.+++++|++|+..+.. .++ .+++| ++.||++++.+++|||||+|||+..+
T Consensus 230 ---~v~~~~~~-~~g~~i~~D~vv~a~G~~~~~~l~~~~~gl-~~~~G~~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~ 304 (430)
T 3h28_A 230 ---KVIYEDLN-GNTHEVPAKFTMFMPSFQGPEVVASAGDKV-ANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKT 304 (430)
T ss_dssp ---EEEEECTT-SCEEEEECSEEEEECEEECCHHHHTTCTTT-BCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCC
T ss_pred ---eEEEEecC-CCceEEeeeEEEECCCCccchhHhhccccC-cCCCCCEEecCccccCCCCCCEEEEEeeeccCCccCC
Confidence 25665432 4567899999999999999866554 255 67889 99999998444999999999999742
Q ss_pred ------chhhhhhhchHHHHHHHHHHHHhcCccee
Q 009224 381 ------WRQAVTAAGSGCIAALSVERYLVNNNLLI 409 (540)
Q Consensus 381 ------~~~~~~A~~~g~~aa~~i~~~l~~~~~~~ 409 (540)
++.+..|..||+.||.+|.+.|.++.+..
T Consensus 305 ~~~~~~pk~~~~A~~~g~~aa~ni~~~l~g~~~~~ 339 (430)
T 3h28_A 305 PIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPDKY 339 (430)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 47889999999999999999999987653
No 79
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.98 E-value=1.9e-32 Score=280.38 Aligned_cols=297 Identities=16% Similarity=0.142 Sum_probs=208.9
Q ss_pred cccEEEECCCHHHHHHHHHHHH---cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR---ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~---~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
+++|+|||||+||+++|..|++ .|++|+|||+++. .+.. ...... ........++...+.+.+++.++
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~---~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~gv 71 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF---SYFR----PALPHV--AIGVRDVDELKVDLSEALPEKGI 71 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE---EEEC----CSSCCC--CSSCCCCCCEEEEHHHHTGGGTC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC---ceec----cchhhc--ccCCcCHHHHHHHHHHHHhhCCe
Confidence 3689999999999999999999 8999999998764 2111 111110 11112333445556677778899
Q ss_pred EEEEeeEEEEEeeCCcEEEEECC---eEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeeeecCCCCCCCCCCEEEE
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGE---RKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACAICDGASPLFKGQVLAV 245 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~~~~~~~~~~~~k~v~V 245 (540)
+++.++|+.++.+++.+++..+. .++.||+||+|||+.|..|.+||.+... ............... ...++++|
T Consensus 72 ~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vV 150 (409)
T 3h8l_A 72 QFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLE-SFQGGNIA 150 (409)
T ss_dssp EEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHH-HCCSEEEE
T ss_pred EEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHH-HhcCCeEE
Confidence 99999999999888877776422 2489999999999999988899876411 000000000000000 01256779
Q ss_pred EeCCc-------------------------cHHHHHH----HHHhcCC----eEEEEEecccccc----cHHHHHHHhcC
Q 009224 246 VGGGD-------------------------TATEEAI----YLTKFAR----HVHLLVRREQLRA----SRAMQDRVFNN 288 (540)
Q Consensus 246 vG~G~-------------------------~a~e~a~----~l~~~g~----~v~li~~~~~~~~----~~~~~~~~l~~ 288 (540)
||+|. .++|+|. .+.+.|. +|+++++.+.+.. ....+.+.+++
T Consensus 151 iG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 230 (409)
T 3h8l_A 151 IGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQ 230 (409)
T ss_dssp EEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHH
T ss_pred EEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHH
Confidence 99992 3667764 4566774 8999999873321 34455666788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccccee-ccCCCCEEeCCCccccCC
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVE-LDSSGYVIVEEGTAKTSV 367 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~-~~~~g~i~vd~~~~~t~~ 367 (540)
.||++++++.+++++.+ ++.+. +++++++|.+|+++|++|+..+...+.. .+++|++.||+.++.++.
T Consensus 231 ~gV~~~~~~~v~~i~~~------~v~~~-----~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~ 299 (409)
T 3h8l_A 231 LGIKLVHNFKIKEIREH------EIVDE-----KGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKY 299 (409)
T ss_dssp HTCEEECSCCEEEECSS------EEEET-----TSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSC
T ss_pred CCCEEEcCCceEEECCC------eEEEC-----CCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCcccccCCC
Confidence 99999999999999765 25542 2356999999999999998654444222 467899999998843499
Q ss_pred CceEEccccCCC-cchhhhhhhchHHHHHHHHHHHHhcCcceeee
Q 009224 368 EGVFAAGDVQDH-EWRQAVTAAGSGCIAALSVERYLVNNNLLIEF 411 (540)
Q Consensus 368 ~~iya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~ 411 (540)
|||||+|||++. .++.+..|..||+.||.+|.+.+++......|
T Consensus 300 ~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l~~~~~~~~~ 344 (409)
T 3h8l_A 300 DNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGVPTKVDKY 344 (409)
T ss_dssp TTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 999999999973 34788999999999999999999554443444
No 80
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.98 E-value=1.1e-32 Score=300.51 Aligned_cols=280 Identities=16% Similarity=0.183 Sum_probs=201.1
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh--
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW-- 168 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (540)
....+||+|||||+||++||..|+++|++|+|||+.+. +||++.... .+|+++ ....+.+++...++..
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~---~GG~~~~~~---~~pg~~---~~~~~~~~~~~~i~~~~~ 456 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK---IGGHLNQVA---ALPGLG---EWSYHRDYRETQITKLLK 456 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TTTTHHHHT---TSTTCG---GGHHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC---cCCeeeecc---cCCChH---HHHHHHHHHHHHHHHhhc
Confidence 44568999999999999999999999999999999887 788876543 233332 2234455555555543
Q ss_pred ----CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCC--------CCCCCCCCcccccCCCeeeeeecCCCCC
Q 009224 169 ----GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT--------AKRLNLPREDEFWSRGISACAICDGASP 236 (540)
Q Consensus 169 ----~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~--------~~~~~ipg~~~~~~~~~~~~~~~~~~~~ 236 (540)
++++..++ .+++. +...+.||+||+|||+. |..|++||.+.+....+.....+.. .
T Consensus 457 ~~~~~v~i~~~~---------~v~~~-~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~--~ 524 (729)
T 1o94_A 457 KNKESQLALGQK---------PMTAD-DVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDG--K 524 (729)
T ss_dssp HSTTCEEECSCC---------CCCHH-HHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHC--C
T ss_pred ccCCceEEEeCe---------EEehh-hccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcC--C
Confidence 44443331 11111 22357899999999997 5667888876432222222222222 2
Q ss_pred CCCCCEEEEEe--CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCC
Q 009224 237 LFKGQVLAVVG--GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKG 308 (540)
Q Consensus 237 ~~~~k~v~VvG--~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g 308 (540)
...+++|+||| +|.+|+|+|..|+++|.+|+++++.+ +.. ....+.+.+++.||++++++.+.++..+.
T Consensus 525 ~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-- 601 (729)
T 1o94_A 525 KKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-- 601 (729)
T ss_dssp SCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE--
T ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe--
Confidence 24688999999 99999999999999999999999987 432 23455566788999999999999997542
Q ss_pred ceeeEEEEEccCC------------------ceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCce
Q 009224 309 QMSGILLRKVDTG------------------EESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 309 ~~~~v~~~~~~~g------------------~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
+.+.....+ +.+++++|.||+|+|++|++.++.. +.. .+|+++ +|+.|+|
T Consensus 602 ----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~~------~vd~~~-~t~~~~V 669 (729)
T 1o94_A 602 ----MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LKA------RESEWA-ENDIKGI 669 (729)
T ss_dssp ----EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HHH------TGGGTG-GGTCCEE
T ss_pred ----EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hhh------hccccc-ccCCCCe
Confidence 334322111 2345999999999999999987652 211 256666 8999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
||+|||+.+ +.+..|+.+|+.||.+|.+++.+...+
T Consensus 670 yAiGD~~~~--~~~~~A~~~G~~aA~~i~~~l~~~~~p 705 (729)
T 1o94_A 670 YLIGDAEAP--RLIADATFTGHRVAREIEEANPQIAIP 705 (729)
T ss_dssp EECGGGTSC--CCHHHHHHHHHHHHHTTTSSCTTSCCC
T ss_pred EEEeCccch--hhHHHHHHHHHHHHHHhhhhcccCCCC
Confidence 999999984 678899999999999998877665554
No 81
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.97 E-value=1e-31 Score=300.39 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=217.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-CCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW-GAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 171 (540)
..+||+|||||+||++||..|++.|++|+|||+++. +||++...+. ..++ .....++...+.+.+.++ +++
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~---~GG~~~~~~k-~~i~----~~~~~~~~~~~~~~l~~~~~v~ 198 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAE---AGGTLLDTAG-EQID----GMDSSAWIEQVTSELAEAEETT 198 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SSGGGGGSSC-CEET----TEEHHHHHHHHHHHHHHSTTEE
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC---CCceeccCCc-cccC----CCCHHHHHHHHHHHHhhcCCcE
Confidence 358999999999999999999999999999999877 7887763100 0111 123456666777777775 899
Q ss_pred EEEe-eEEEEEeeCCc---------EEEE-------ECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeee----e
Q 009224 172 LHQE-DVEFIDVKSNP---------FTVK-------SGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACA----I 230 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~---------~~v~-------~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~----~ 230 (540)
++.+ +|..++.++.. +.+. .+...+.||+||||||+.|+.|++||.+. .++.... +
T Consensus 199 ~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~---~gv~~~~~~~~~ 275 (965)
T 2gag_A 199 HLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDR---PGIMLAGAVRSY 275 (965)
T ss_dssp EESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCS---TTEEEHHHHHHH
T ss_pred EEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCC---CCEEEhHHHHHH
Confidence 8877 77777643321 2221 11236899999999999999999998764 2232221 1
Q ss_pred cCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 231 CDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 231 ~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
.... ...++++++|||+|++|+|+|..|.+.|.+|+++++.+.+... .+.+++.||++++++.+.++..++++++
T Consensus 276 l~~~-~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~----~~~l~~~GV~v~~~~~v~~i~~~~~~~v 350 (965)
T 2gag_A 276 LNRY-GVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA----AAQAVADGVQVISGSVVVDTEADENGEL 350 (965)
T ss_dssp HHTT-CEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH----HHHHHHTTCCEEETEEEEEEEECTTSCE
T ss_pred HHhc-CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh----HHHHHhCCeEEEeCCEeEEEeccCCCCE
Confidence 1111 1235789999999999999999999999999999999877543 3456788999999999999987423557
Q ss_pred eeEEEEEcc----CCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCcc----ccCCCceEEccccCCCcch
Q 009224 311 SGILLRKVD----TGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTA----KTSVEGVFAAGDVQDHEWR 382 (540)
Q Consensus 311 ~~v~~~~~~----~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~----~t~~~~iya~GD~~~~~~~ 382 (540)
.++.+.+.+ +|..++++||.|++++|++|++.++.. .++++.+|+.++ .|+.|+|||+|||++.+
T Consensus 351 ~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~-----~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~-- 423 (965)
T 2gag_A 351 SAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ-----RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRL-- 423 (965)
T ss_dssp EEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH-----TTCCEEEETTTTEEEECSCCTTEEECGGGGTCC--
T ss_pred EEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh-----CCCcEEEcCcccccccCCCCCCEEEEEecCCch--
Confidence 778776521 133478999999999999999987642 256788988773 28999999999999863
Q ss_pred hhhhhhchHHHHHHHHHHHHhcC
Q 009224 383 QAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.+..|+.+|+.||.+|...++..
T Consensus 424 ~l~~A~~~G~~aA~~i~~~lg~~ 446 (965)
T 2gag_A 424 DTASALSTGAATGAAAATAAGFA 446 (965)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCC
Confidence 45589999999999999988743
No 82
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=99.97 E-value=1.7e-32 Score=286.36 Aligned_cols=298 Identities=17% Similarity=0.177 Sum_probs=201.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCC----CcceeeccCcc-----ccCCCCCCC-----CChH
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGV----PGGQLMTTTEV-----ENFPGFPDG-----ITGP 155 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~----~gg~~~~~~~~-----~~~~~~~~~-----~~~~ 155 (540)
...+||+|||||+||++||..|++. |.+|+|||+++..++ +++.+...... ..+++++.. ..+.
T Consensus 9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (493)
T 1m6i_A 9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP 88 (493)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccch
Confidence 3458999999999999999999887 899999999875332 12222211100 000011000 0000
Q ss_pred HHHHHHH--HHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc-cCCCeeeeeec
Q 009224 156 DLMDRMR--RQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF-WSRGISACAIC 231 (540)
Q Consensus 156 ~~~~~~~--~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~-~~~~~~~~~~~ 231 (540)
++..... ..+.+.+++++.+ +|+.++.+.+.+.+. ++..+.||+||||||++|+.+++++.... ....+......
T Consensus 89 ~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~-~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~ 167 (493)
T 1m6i_A 89 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN-DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI 167 (493)
T ss_dssp GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEET-TSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSH
T ss_pred HhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEEC-CCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCH
Confidence 0000000 0123468899997 899999887766654 66789999999999999987766553110 00112111111
Q ss_pred CCC----CCCCCCCEEEEEeCCccHHHHHHHHHh----cCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCc
Q 009224 232 DGA----SPLFKGQVLAVVGGGDTATEEAIYLTK----FARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 232 ~~~----~~~~~~k~v~VvG~G~~a~e~a~~l~~----~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~ 297 (540)
... .....+++++|||+|++|+|+|..|.+ .|.+|+++.+.+.+.. ....+.+.+++.||++++++
T Consensus 168 ~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~ 247 (493)
T 1m6i_A 168 GDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA 247 (493)
T ss_dssp HHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred HHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCC
Confidence 000 011248999999999999999999876 4789999988754322 34455667889999999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccC-CCCEEeCCCccccCCCceEEccc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDS-SGYVIVEEGTAKTSVEGVFAAGD 375 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~-~g~i~vd~~~~~t~~~~iya~GD 375 (540)
.+.++..+++ .+ .+.+ . +++++++|.||+|+|.+|++.++.. ++++++ +|+|.||+++ ++ .|+|||+||
T Consensus 248 ~V~~i~~~~~-~~-~v~l---~--dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l-~t-~~~IyA~GD 318 (493)
T 1m6i_A 248 IVQSVGVSSG-KL-LIKL---K--DGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAEL-QA-RSNIWVAGD 318 (493)
T ss_dssp CEEEEEEETT-EE-EEEE---T--TSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTC-EE-ETTEEECGG
T ss_pred EEEEEEecCC-eE-EEEE---C--CCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCc-cc-CCCeeEeee
Confidence 9999986532 22 2333 2 2357999999999999999988753 677775 6889999998 66 699999999
Q ss_pred cCCCc--------chhhhhhhchHHHHHHHHH
Q 009224 376 VQDHE--------WRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 376 ~~~~~--------~~~~~~A~~~g~~aa~~i~ 399 (540)
|+..+ ...+..|+.||+.||.+|.
T Consensus 319 ~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~ 350 (493)
T 1m6i_A 319 AACFYDIKLGRRRVEHHDHAVVSGRLAGENMT 350 (493)
T ss_dssp GEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred eEeccCcccCccccchHHHHHHHHHHHHHHhc
Confidence 98742 1234589999999999986
No 83
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.97 E-value=2.9e-32 Score=296.06 Aligned_cols=276 Identities=19% Similarity=0.181 Sum_probs=210.1
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW- 168 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (540)
+....+||+|||||+||++||..|+++|++|+|||+.+. .||.+.... .+|+ .....++.+++...+.++
T Consensus 387 ~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~---~GG~~~~~~---~~p~---~~~~~~~~~~~~~~~~~~~ 457 (690)
T 3k30_A 387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD---LGGRVTQES---ALPG---LSAWGRVKEYREAVLAELP 457 (690)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS---SCTHHHHHH---TSTT---CGGGGHHHHHHHHHHHTCT
T ss_pred cccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---CCCEeeecc---CCCc---hhHHHHHHHHHHHHHHHcC
Confidence 345568999999999999999999999999999999887 888776532 2222 234567888888888887
Q ss_pred CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC--------CCCCCCCcccccCCCeeeeeecCCCCCCCCC
Q 009224 169 GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA--------KRLNLPREDEFWSRGISACAICDGASPLFKG 240 (540)
Q Consensus 169 ~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~--------~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~ 240 (540)
+++++.++....+ +...+.||+||+|||+.| ..|.+||.+.. ..+........ ....+
T Consensus 458 gv~~~~~~~v~~~----------~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~--~v~~~~~~l~~--~~~~g 523 (690)
T 3k30_A 458 NVEIYRESPMTGD----------DIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGM--QVLGPDDLFAG--RLPDG 523 (690)
T ss_dssp TEEEESSCCCCHH----------HHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTS--EEECHHHHHTT--CCCSS
T ss_pred CCEEEECCeecHH----------HHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCC--cEEcHHHHhCC--CCCCC
Confidence 8888877321110 224578999999999984 46777776531 11111222222 23568
Q ss_pred CEEEEEe--CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 241 QVLAVVG--GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 241 k~v~VvG--~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
++|+||| +|.+|+|+|..|.+.|.+|+++++.+.+.. ....+.+.+++.||++++++++.++..+.
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~------ 597 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG------ 597 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE------
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe------
Confidence 8999999 999999999999999999999999887644 24555666788999999999999998652
Q ss_pred EEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHH
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGC 392 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~ 392 (540)
+.+....+++++++++|.||+|+|++|++.++.. ++..+. +|+.|+||++|||+.+ +.+..|+.+|+
T Consensus 598 ~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~---l~~~~~--------~t~~~~VyaiGD~~~~--~~~~~A~~~g~ 664 (690)
T 3k30_A 598 VTVRDTYASIERELECDAVVMVTARLPREELYLD---LVARRD--------AGEIASVRGIGDAWAP--GTIAAAVWSGR 664 (690)
T ss_dssp EEEEETTTCCEEEEECSEEEEESCEEECCHHHHH---HHHHHH--------HTSCSEEEECGGGTSC--BCHHHHHHHHH
T ss_pred EEEEEccCCeEEEEECCEEEECCCCCCChHHHHH---Hhhhhc--------ccCCCCEEEEeCCCch--hhHHHHHHHHH
Confidence 5555545567788999999999999999987653 111111 6788999999999986 57778999999
Q ss_pred HHHHHHHHHHhcCcc
Q 009224 393 IAALSVERYLVNNNL 407 (540)
Q Consensus 393 ~aa~~i~~~l~~~~~ 407 (540)
.||.+|.+.+.++..
T Consensus 665 ~aa~~i~~~l~g~~~ 679 (690)
T 3k30_A 665 RAAEEFDAVLPSNDE 679 (690)
T ss_dssp HHHHHTTCCCCCTTS
T ss_pred HHHHHHHhhccCCCC
Confidence 999999988777644
No 84
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.97 E-value=7.8e-32 Score=275.15 Aligned_cols=293 Identities=16% Similarity=0.114 Sum_probs=202.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccC-CCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENF-PGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.|+|||||||+||+++|.+|++.+ .+|+|||+++... +......+ .+. ....++... .+.+.+.|+
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~-------~~p~~~~v~~g~---~~~~~~~~~-~~~~~~~gv 70 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYY-------TCYMSNEVIGGD---RELASLRVG-YDGLRAHGI 70 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEE-------CSTTHHHHHHTS---SCGGGGEEC-SHHHHHTTC
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCC-------CccCHHHHhcCC---CCHHHHhhC-HHHHHHCCC
Confidence 478999999999999999999876 5899999866411 11000000 000 111121111 233556899
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCC-eeeeeecC-------CCCCCCCCCE
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRG-ISACAICD-------GASPLFKGQV 242 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~-~~~~~~~~-------~~~~~~~~k~ 242 (540)
+++.++|+.+|++++.+.+. ++.++.||+||+|||+++..+.+||.++..... .+.....+ .... .....
T Consensus 71 ~~i~~~v~~id~~~~~v~~~-~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 148 (401)
T 3vrd_B 71 QVVHDSALGIDPDKKLVKTA-GGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES-MDDGG 148 (401)
T ss_dssp EEECSCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH-SCTTC
T ss_pred EEEEeEEEEEEccCcEEEec-ccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHh-cccCC
Confidence 99999999999988877665 678899999999999999999999976532211 11111100 0011 12233
Q ss_pred EEEEeCCc-----------cHHHHHHHHHhcC--CeEEEEEecccccc-------cHHHHHHHhcCCCeEEEeCceEEEE
Q 009224 243 LAVVGGGD-----------TATEEAIYLTKFA--RHVHLLVRREQLRA-------SRAMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 243 v~VvG~G~-----------~a~e~a~~l~~~g--~~v~li~~~~~~~~-------~~~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
.+|+++|. .+.+++..+++.+ .+|+++.+.+.+.. ..+.....+++.||++++++++..+
T Consensus 149 ~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v 228 (401)
T 3vrd_B 149 VVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVV 228 (401)
T ss_dssp EEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEE
T ss_pred cEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEE
Confidence 44444333 2345666666554 68999998877633 1222333467889999999999888
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCC-ccccCCCceEEccccCCC--
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG-TAKTSVEGVFAAGDVQDH-- 379 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~-~~~t~~~~iya~GD~~~~-- 379 (540)
+.+.++. .+.+ .+++++++|++++++|++|+..+...++ .+++|+|.||++ ++.+++|||||+|||++.
T Consensus 229 ~~~~~~~--~v~~-----~~g~~i~~D~vi~~~g~~~~~~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~ 300 (401)
T 3vrd_B 229 KTDTEAM--TVET-----SFGETFKAAVINLIPPQRAGKIAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP 300 (401)
T ss_dssp EEETTTT--EEEE-----TTSCEEECSEEEECCCEEECHHHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT
T ss_pred Eecccce--EEEc-----CCCcEEEeeEEEEecCcCCchhHhhccc-cccCCCEEECCCcceecCCCCEEEecccccCCC
Confidence 7765421 2333 3456799999999999999854444455 588999999997 556899999999999863
Q ss_pred cchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 380 EWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 380 ~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.+++++.|..||+.+|.||.+.|.++..
T Consensus 301 ~pk~a~~A~~qa~v~A~ni~~~l~G~~~ 328 (401)
T 3vrd_B 301 MPKSAYSANSQAKVAAAAVVALLKGEEP 328 (401)
T ss_dssp SCBSHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2478899999999999999999998764
No 85
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=99.97 E-value=8.8e-30 Score=263.38 Aligned_cols=280 Identities=18% Similarity=0.187 Sum_probs=202.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCcc----------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEV---------------------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~---------------------------- 142 (540)
..+||+|||||++|+++|..|++.|+ +|+|||+.+. +||.|......
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~---~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~ 81 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS---PGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYP 81 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS---SSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCC---CCCeecCCCCCCcccccccccccccccccccccccCCcc
Confidence 35899999999999999999999999 9999999866 55555443210
Q ss_pred ---------------ccCCCC------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEEC----Ce--
Q 009224 143 ---------------ENFPGF------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSG----ER-- 194 (540)
Q Consensus 143 ---------------~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~----~~-- 194 (540)
..++++ +.+....++.+++.++.++++..++.+ +|+.++..++.|.|... +.
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~ 161 (447)
T 2gv8_A 82 SPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPI 161 (447)
T ss_dssp CCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCE
T ss_pred CchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCee
Confidence 001111 122335677888888888777777665 89999988887777652 44
Q ss_pred -EEEecEEEEccCC--CCCCCCCCCccccc----CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCe-E
Q 009224 195 -KVKCHSIVFATGA--TAKRLNLPREDEFW----SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARH-V 266 (540)
Q Consensus 195 -~~~~d~lviAtG~--~~~~~~ipg~~~~~----~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~-v 266 (540)
.+.||+||+|||. .|+.|.+||.+.+. +..++...+.+. ..+.+++|+|||+|++|+|+|..|++.+.+ |
T Consensus 162 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~--~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V 239 (447)
T 2gv8_A 162 SKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREP--ELFVGESVLVVGGASSANDLVRHLTPVAKHPI 239 (447)
T ss_dssp EEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCG--GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSE
T ss_pred EEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCCh--hhcCCCEEEEEccCcCHHHHHHHHHHHhCCcE
Confidence 7999999999998 78889999976542 122222222221 124789999999999999999999999999 9
Q ss_pred EEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc---
Q 009224 267 HLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL--- 343 (540)
Q Consensus 267 ~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--- 343 (540)
+++.|.+.+ ++..||.+ ...|.++..++. .|.+. +|+ ..+++|.||+|+|++|++.+
T Consensus 240 ~l~~r~~~~----------l~~~~i~~--~~~v~~~~~~~~----~v~~~---dG~-~~~~~D~vi~atG~~~~~~~l~~ 299 (447)
T 2gv8_A 240 YQSLLGGGD----------IQNESLQQ--VPEITKFDPTTR----EIYLK---GGK-VLSNIDRVIYCTGYLYSVPFPSL 299 (447)
T ss_dssp EEECTTCCS----------CBCSSEEE--ECCEEEEETTTT----EEEET---TTE-EECCCSEEEECCCBCCCCCCHHH
T ss_pred EEEeCCCCc----------CCCCCeEE--ecCeEEEecCCC----EEEEC---CCC-EeccCCEEEECCCCCcCCCCCcc
Confidence 999998765 56678874 467888865432 35553 232 34789999999999999988
Q ss_pred --ccc-ceeccCCCCEEeCCCc--cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 344 --LQG-QVELDSSGYVIVEEGT--AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 344 --~~~-~~~~~~~g~i~vd~~~--~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+.. +..+..++.+.++.+. ..++.|+||++||+... .....|..||+.+|.++.
T Consensus 300 ~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~--~~~~~a~~qa~~~a~~~~ 358 (447)
T 2gv8_A 300 AKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV--VPFPTSQAQAAFLARVWS 358 (447)
T ss_dssp HSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS--CHHHHHHHHHHHHHHHHT
T ss_pred cccccccCceecCCCcccccccccccCCCCcEEEEeccccc--cCchHHHHHHHHHHHHHc
Confidence 653 1112223444444333 12789999999999886 367888899999998884
No 86
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.97 E-value=1.5e-29 Score=263.30 Aligned_cols=303 Identities=17% Similarity=0.175 Sum_probs=200.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC-----CceEEEcCCCCCCCCcceeeccCccc-----c-----CCCC---------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARAN-----LKPVVFEGYQAGGVPGGQLMTTTEVE-----N-----FPGF--------- 148 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g-----~~v~lie~~~~~~~~gg~~~~~~~~~-----~-----~~~~--------- 148 (540)
..+||+|||||+||+++|..|++.| ++|+|||+.+..++..+.+....... . .|..
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 4589999999999999999999999 99999999887554333332111110 0 0000
Q ss_pred ------------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee---CCcE--EEEE-CCe----EEEecEEEEcc
Q 009224 149 ------------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK---SNPF--TVKS-GER----KVKCHSIVFAT 205 (540)
Q Consensus 149 ------------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~---~~~~--~v~~-~~~----~~~~d~lviAt 205 (540)
..+....++.+++....++++++++.+ +|+.++.+ ++.| .|.. ++. .+.||+||+||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAt 188 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSP 188 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECC
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECC
Confidence 011235667778888888888888887 69999876 4433 4543 332 79999999999
Q ss_pred CCCCCCCCCCCcccccC--CCeeeeeecCCCCCC----CCCCEEEEEeCCccHHHHHHHHHhc--CCeEEEEEecccccc
Q 009224 206 GATAKRLNLPREDEFWS--RGISACAICDGASPL----FKGQVLAVVGGGDTATEEAIYLTKF--ARHVHLLVRREQLRA 277 (540)
Q Consensus 206 G~~~~~~~ipg~~~~~~--~~~~~~~~~~~~~~~----~~~k~v~VvG~G~~a~e~a~~l~~~--g~~v~li~~~~~~~~ 277 (540)
|+.|..|.. .+.+.. ..++...+....... ..+++|+|||+|.+|+|+|..|.+. +.+|+++.|++.+.+
T Consensus 189 G~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p 266 (463)
T 3s5w_A 189 GGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP 266 (463)
T ss_dssp CCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB
T ss_pred CCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC
Confidence 998776641 222222 223333332211111 1589999999999999999999999 899999999886532
Q ss_pred c--------------------------HHHHH-------------------------HHhcCCCeEEEeCceEEEEeeCC
Q 009224 278 S--------------------------RAMQD-------------------------RVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 278 ~--------------------------~~~~~-------------------------~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
. ..+.. ++....||++++++.|+++..++
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~ 346 (463)
T 3s5w_A 267 ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA 346 (463)
T ss_dssp CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET
T ss_pred ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC
Confidence 0 01111 11122699999999999998765
Q ss_pred CCceeeEEEEEccCCceEEEEccEEEEecccccC--ccccccceeccCCCCEEeCCCccccC----CCceEEccccCCC-
Q 009224 307 KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN--SQLLQGQVELDSSGYVIVEEGTAKTS----VEGVFAAGDVQDH- 379 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~--~~~~~~~~~~~~~g~i~vd~~~~~t~----~~~iya~GD~~~~- 379 (540)
+ ...+.+.+..+|+..++++|.||+|+|++|+ ..++... .... |++.||++++... .++|||+|||...
T Consensus 347 ~--~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l-~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~ 422 (463)
T 3s5w_A 347 Q--GIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPL-AEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQASH 422 (463)
T ss_dssp T--EEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGG-GGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred C--EEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHH-HHHh-CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence 3 2346666655677778999999999999999 5555431 1111 7899999884333 4679999999752
Q ss_pred ---cchhhhhhhchHHHHHHHHHHH
Q 009224 380 ---EWRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 380 ---~~~~~~~A~~~g~~aa~~i~~~ 401 (540)
.+.....|.+++++++..+.+.
T Consensus 423 g~~~~~l~~~a~r~~~i~~~~~~~~ 447 (463)
T 3s5w_A 423 GLSDTLLSVLPVRAEEISGSLYQHL 447 (463)
T ss_dssp CTTTTSSTTHHHHHHHHHHHHHHHH
T ss_pred CcCccchhHHHHHHHHHHHHHHhhc
Confidence 1234456666666665555444
No 87
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.97 E-value=4.9e-30 Score=277.84 Aligned_cols=258 Identities=20% Similarity=0.260 Sum_probs=191.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
....+||+|||||+||++||..|++.|++|+|||+.+. +||.+.... .++......++..++...+++.++
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~---~gg~~~~~~------~~~~~~~~~~~~~~~~~~~~~~gv 440 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE---IGGQFNIAK------QIPGKEEFYETLRYYRRMIEVTGV 440 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS---SCTTHHHHT------TSTTCTTHHHHHHHHHHHHHHHTC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---CCCeeeccc------cCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34568999999999999999999999999999999877 777765432 122223345667778888889999
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEE-EecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKV-KCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~-~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
+++.++.... ..+ .||+||||||+.|+.|++||.+.. ..+........ ....+++|+|||+|
T Consensus 441 ~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~i~G~~~~--~v~~~~~~l~~--~~~~~~~VvVIGgG 503 (671)
T 1ps9_A 441 TLKLNHTVTA-------------DQLQAFDETILASGIVPRTPPIDGIDHP--KVLSYLDVLRD--KAPVGNKVAIIGCG 503 (671)
T ss_dssp EEEESCCCCS-------------SSSCCSSEEEECCCEEECCCCCBTTTST--TEEEHHHHHTS--CCCCCSEEEEECCH
T ss_pred EEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCCCCCCCCC--cEeeHHHHhhC--CCCCCCeEEEECCC
Confidence 9988853211 123 899999999999999999997541 11222222222 22468999999999
Q ss_pred ccHHHHHHHHHhcCC-------------------------------------eEEEEEecccccc------cHHHHHHHh
Q 009224 250 DTATEEAIYLTKFAR-------------------------------------HVHLLVRREQLRA------SRAMQDRVF 286 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~-------------------------------------~v~li~~~~~~~~------~~~~~~~~l 286 (540)
.+|+|+|..|++.|. +|+++.+.+.... ......+.+
T Consensus 504 ~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l 583 (671)
T 1ps9_A 504 GIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTL 583 (671)
T ss_dssp HHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHH
Confidence 999999999998763 4666766543321 234455667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccC
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~ 366 (540)
++.||++++++.+.++..+ ++.+. .+|+.+++++|.||+|+|++|+++++.. ++ ..
T Consensus 584 ~~~GV~v~~~~~v~~i~~~------~v~~~--~~G~~~~i~~D~Vi~a~G~~p~~~l~~~---l~-------------~~ 639 (671)
T 1ps9_A 584 LSRGVKMIPGVSYQKIDDD------GLHVV--INGETQVLAVDNVVICAGQEPNRALAQP---LI-------------DS 639 (671)
T ss_dssp HHTTCEEECSCEEEEEETT------EEEEE--ETTEEEEECCSEEEECCCEEECCTTHHH---HH-------------TT
T ss_pred HhcCCEEEeCcEEEEEeCC------eEEEe--cCCeEEEEeCCEEEECCCccccHHHHHH---HH-------------hc
Confidence 8899999999999999753 24553 3455578999999999999999987652 11 12
Q ss_pred CCceEEccccCCCcchhhhhhhchHHHHHHHH
Q 009224 367 VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 367 ~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i 398 (540)
.++||++|||+......+..|+.||+.+|.+|
T Consensus 640 g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 640 GKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 36899999999865456899999999999875
No 88
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.96 E-value=7e-28 Score=253.16 Aligned_cols=295 Identities=19% Similarity=0.255 Sum_probs=209.4
Q ss_pred cccEEEECCCHHHHHHHHHHH-HcCCceEEEcCCCCCCCCcceeecc----------CccccCC---------CCC-CCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAA-RANLKPVVFEGYQAGGVPGGQLMTT----------TEVENFP---------GFP-DGI 152 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~-~~g~~v~lie~~~~~~~~gg~~~~~----------~~~~~~~---------~~~-~~~ 152 (540)
.+||+|||||+||+++|..|+ +.|++|+|||+.+. .||.+... .....+. .+. .+.
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~---~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 84 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG---PGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYI 84 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS---SCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCC---CCCcccccCCCCceecCCcceeeeccccccccCCCCcccCC
Confidence 479999999999999999999 89999999999776 55555422 1111110 111 123
Q ss_pred ChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++.+++...++++++ .++.+ +|+.++.+++ .|+|.. ++.++.||+||+||| +.|+.|++||.+.|.+..
T Consensus 85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (540)
T 3gwf_A 85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGET 164 (540)
T ss_dssp EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCE
Confidence 457888999999999998 67766 8999988766 677776 556799999999999 689999999998776665
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc-cc------c---HHHHH-----------
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL-RA------S---RAMQD----------- 283 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~-~~------~---~~~~~----------- 283 (540)
++...+.... ...+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+ .+ . ...++
T Consensus 165 ~~~~~~~~~~--~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (540)
T 3gwf_A 165 IHTAAWPEGK--SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAK 242 (540)
T ss_dssp EEGGGCCSSC--CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHH
T ss_pred EEeecCCCcc--ccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHH
Confidence 6655544432 357899999999999999999999999999999998873 11 0 00000
Q ss_pred --------------------------------------------------------------------------------
Q 009224 284 -------------------------------------------------------------------------------- 283 (540)
Q Consensus 284 -------------------------------------------------------------------------------- 283 (540)
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P 322 (540)
T 3gwf_A 243 NSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMP 322 (540)
T ss_dssp TSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCC
T ss_pred hccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCC
Confidence
Q ss_pred ---------------HHhcCCCeEEEe--CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc
Q 009224 284 ---------------RVFNNPNITVHF--NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 284 ---------------~~l~~~gv~~~~--~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
+.+.+.+|+++. ...|.+++++ +|.+ .+++++++|.||+|||+++++.++..
T Consensus 323 ~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~-----~dG~~~~~DvIV~ATGf~~~~~~~~~ 391 (540)
T 3gwf_A 323 KGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVT-----EDGVLHELDVLVFATGFDAVDGNYRR 391 (540)
T ss_dssp CSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEE-----TTCCEEECSEEEECCCBSCSSHHHHT
T ss_pred CCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEc-----CCCCEEECCEEEECCccCccccCcCc
Confidence 012256888885 6788888765 3655 33566999999999999999744321
Q ss_pred -------ceeccC--CCCEEeCCCccccCCCceEEc-cccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 347 -------QVELDS--SGYVIVEEGTAKTSVEGVFAA-GDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 347 -------~~~~~~--~g~i~vd~~~~~t~~~~iya~-GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+..+++ .+.+..-..+...+.||+|.+ |..+.. ......+-.|++.++..|.+...+.
T Consensus 392 ~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~-~s~~~~~e~q~~~i~~~i~~~~~~~ 459 (540)
T 3gwf_A 392 IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPF-TNLPPSIETQVEWISDTIGYAERNG 459 (540)
T ss_dssp SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBC-SCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCC-ccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 222221 122233333445688999999 776542 2445666677888888876665544
No 89
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.96 E-value=2.1e-29 Score=263.10 Aligned_cols=259 Identities=17% Similarity=0.234 Sum_probs=193.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||+++|..|++. ++|+|||+.+. +||.+..... ...+++. ...++...+.+.+ +.++++
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~---~GG~~~~~~~--~~~g~~~--~~~~~~~~l~~~l-~~~v~~ 177 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGW---LGGDMWLKGI--KQEGFNK--DSRKVVEELVGKL-NENTKI 177 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSS---SSCSGGGTCS--EETTTTE--EHHHHHHHHHHTC-CTTEEE
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCC---CCCeeecccc--ccCCCCC--CHHHHHHHHHHHH-hcCCEE
Confidence 357999999999999999999999 99999999887 7777664321 1123322 3455555555545 568887
Q ss_pred EEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeec---CCCCCCCCCCEEE
Q 009224 173 HQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAIC---DGASPLFKGQVLA 244 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~---~~~~~~~~~k~v~ 244 (540)
+.+ +|..++.+++.+.+.. ++. .+.||+||+|||+.|+.|++||.+. .++...... .......++++++
T Consensus 178 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~~~~vv 254 (493)
T 1y56_A 178 YLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDM---PGVFRRDFALEVMNVWEVAPGRKVA 254 (493)
T ss_dssp ETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTS---TTEEEHHHHHHHHHTSCBCSCSEEE
T ss_pred EcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCC---CCEEEcHHHHHHHHhcccCCCCEEE
Confidence 765 7888888887776642 343 6899999999999999998998753 222221110 0011234679999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|||+|++|+| +.+++.||++++++.+.++..++ ++..+.+ .++.
T Consensus 255 ViGgG~~gle-----------------------------~~l~~~GV~v~~~~~v~~i~~~~--~v~~v~~-----~~g~ 298 (493)
T 1y56_A 255 VTGSKADEVI-----------------------------QELERWGIDYVHIPNVKRVEGNE--KVERVID-----MNNH 298 (493)
T ss_dssp EESTTHHHHH-----------------------------HHHHHHTCEEEECSSEEEEECSS--SCCEEEE-----TTCC
T ss_pred EECCCHHHHH-----------------------------HHHHhCCcEEEeCCeeEEEecCC--ceEEEEe-----CCCe
Confidence 9999999988 23456799999999999998653 3444443 2346
Q ss_pred EEEccEEEEecccccCcccccc-c--eeccCCCCEE-eCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG-Q--VELDSSGYVI-VEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~-~--~~~~~~g~i~-vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 400 (540)
++++|.||+|+|++|+.+++.. + +.++++|++. +|+++ + +.|+|||+|||++. ..+..|..+|+.||.+|..
T Consensus 299 ~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~-~-s~~~vya~GD~~~~--~~~~~A~~~g~~aa~~i~~ 374 (493)
T 1y56_A 299 EYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYH-R-IKDGIYVAGSAVSI--KPHYANYLEGKLVGAYILK 374 (493)
T ss_dssp EEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTS-E-EETTEEECSTTTCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCEEEECCCcCcCchHHHhcCCCccccCCceeecccccc-C-cCCCEEEEeccCCc--cCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999987753 3 3456789888 78888 5 89999999999986 5788999999999999998
Q ss_pred HHh
Q 009224 401 YLV 403 (540)
Q Consensus 401 ~l~ 403 (540)
.++
T Consensus 375 ~lg 377 (493)
T 1y56_A 375 EFG 377 (493)
T ss_dssp HTT
T ss_pred HcC
Confidence 874
No 90
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.95 E-value=6.1e-26 Score=238.69 Aligned_cols=179 Identities=19% Similarity=0.270 Sum_probs=136.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc----------ccC---------CCCC-CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV----------ENF---------PGFP-DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~----------~~~---------~~~~-~~~ 152 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. .||.|...... ..+ +.+. .+.
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~---~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~ 84 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED---VGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFA 84 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC---CCCccccCCCCceeecCchhhcccccCcccccCCCccccCC
Confidence 357999999999999999999999999999999876 66665422110 000 0111 234
Q ss_pred ChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++..++....+++++ .++.+ +|+.++.+++ .|.|.. ++.++.||+||+||| +.|+.|++||.+.|.+..
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 567889999999999987 56665 8888877654 677776 567899999999999 789999999998776655
Q ss_pred eeeeeecCCC-----CCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 225 ISACAICDGA-----SPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 225 ~~~~~~~~~~-----~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
++...+.... .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus 165 ~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 165 FHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp EEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred EEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 5555444330 0224789999999999999999999999999999999886
No 91
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.94 E-value=8.5e-25 Score=231.02 Aligned_cols=297 Identities=14% Similarity=0.217 Sum_probs=204.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc----------CccccCC---------CCC-CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT----------TEVENFP---------GFP-DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~----------~~~~~~~---------~~~-~~~ 152 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+. .||.|... .....+. .++ .+.
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~---~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~ 91 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD---VGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA 91 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC---CCCcccccCCCceeecccccccccccChhhhhccCcccccC
Confidence 358999999999999999999999999999999876 55544321 1111110 111 234
Q ss_pred ChHHHHHHHHHHHHHhC--CEEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWG--AELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--v~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++.+++....++++ ..++.+ +|+.++.+++ .|.|.. ++.++++|+||+||| +.|+.|.+||.+.+.+..
T Consensus 92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~ 171 (542)
T 1w4x_A 92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNL 171 (542)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 56778888888888876 456665 8888887653 677776 456899999999999 578889999987765554
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc-c------cHHH----------------
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR-A------SRAM---------------- 281 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~-~------~~~~---------------- 281 (540)
++...+.... ....+|+|+|||+|.+|+|++..|++.+.+|+++.|.+.+. + ....
T Consensus 172 ~hs~~~~~~~-~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~ 250 (542)
T 1w4x_A 172 YHTGNWPHEP-VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESR 250 (542)
T ss_dssp EEGGGCCSSC-CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHH
T ss_pred EECCCCCCch-hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHH
Confidence 5554443221 12579999999999999999999999999999999886541 1 0000
Q ss_pred --------------------------HH----------------------------------------------------
Q 009224 282 --------------------------QD---------------------------------------------------- 283 (540)
Q Consensus 282 --------------------------~~---------------------------------------------------- 283 (540)
.+
T Consensus 251 ~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~ 330 (542)
T 1w4x_A 251 NTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKG 330 (542)
T ss_dssp TSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCS
T ss_pred hhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCC
Confidence 00
Q ss_pred ---------------HHhcCCCeEEE--eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc
Q 009224 284 ---------------RVFNNPNITVH--FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 284 ---------------~~l~~~gv~~~--~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
+.+.+.+|+++ .+..|.++.++ +|.+ .+ +++++|.||+|||+++++.++..
T Consensus 331 ~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~-----~d-~~~~~D~ii~atG~~~~~~~~~~ 398 (542)
T 1w4x_A 331 YPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRT-----SE-REYELDSLVLATGFDALTGALFK 398 (542)
T ss_dssp SCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEE-----SS-CEEECSEEEECCCCCCTTHHHHT
T ss_pred CCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEe-----CC-eEEecCEEEEcCCccccccCcCc
Confidence 00122456665 35567777543 3554 23 57999999999999998766542
Q ss_pred ceec-cCCCCEEeC---------CCccccCCCceEEc-cccCCCcc-hhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 347 QVEL-DSSGYVIVE---------EGTAKTSVEGVFAA-GDVQDHEW-RQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 347 ~~~~-~~~g~i~vd---------~~~~~t~~~~iya~-GD~~~~~~-~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
+.+ ..+|....+ ..+...+.||+|++ |+.+.... .....+..|++.+|.+|.+...+..
T Consensus 399 -~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~~ 469 (542)
T 1w4x_A 399 -IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGL 469 (542)
T ss_dssp -SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -eeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 222 233433332 12334578999998 99875322 3347788899999999988876654
No 92
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.94 E-value=9.2e-25 Score=229.94 Aligned_cols=177 Identities=20% Similarity=0.310 Sum_probs=139.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC----------ccccCC---------CC-CCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT----------EVENFP---------GF-PDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~----------~~~~~~---------~~-~~~~ 152 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. .||.|.... ....+. .+ ..+.
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~---~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~ 96 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG---VGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYA 96 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSC
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCC---CCCccccCCCCCceeCCCchhcccccccccccCCCCccCCC
Confidence 458999999999999999999999999999999776 666554321 111100 11 1134
Q ss_pred ChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++.+++...++++++ .++.+ +|+.++.+++ .|+|.. ++.++.||+||+||| +.|..|.+||.+.+.+..
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 176 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDI 176 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 567889999999999998 67666 8999987766 677776 566799999999999 789999999998776655
Q ss_pred eeeeeec-CCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 225 ISACAIC-DGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 225 ~~~~~~~-~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
++...+. +.. ...+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus 177 ~~~~~~~~~~~--~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 177 VHTARWPHDGV--DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp EEGGGCCTTCC--CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred EEecccccccc--ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 5555444 222 24799999999999999999999999999999999886
No 93
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.87 E-value=3e-20 Score=193.91 Aligned_cols=284 Identities=19% Similarity=0.199 Sum_probs=179.7
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcC--------------CceEEEcCCCCCCCCcceeeccCccc-----cC-----
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARAN--------------LKPVVFEGYQAGGVPGGQLMTTTEVE-----NF----- 145 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g--------------~~v~lie~~~~~~~~gg~~~~~~~~~-----~~----- 145 (540)
+....+||+|||+||+||++|..|.+.| ...+.+|+.+..+|..|++.....++ .+
T Consensus 35 p~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~ 114 (501)
T 4b63_A 35 PQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRD 114 (501)
T ss_dssp CTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTC
T ss_pred CCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccC
Confidence 3456799999999999999999998753 35678888776665555443222111 00
Q ss_pred CC--------------------C-CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC--------cEEEEE----
Q 009224 146 PG--------------------F-PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN--------PFTVKS---- 191 (540)
Q Consensus 146 ~~--------------------~-~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~--------~~~v~~---- 191 (540)
|. . ..+....++.+|++...++++..++.+ +|+.+..... .|+|..
T Consensus 115 P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~ 194 (501)
T 4b63_A 115 PRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVE 194 (501)
T ss_dssp TTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETT
T ss_pred CCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCC
Confidence 10 1 124567889999999999988777776 7888876542 477765
Q ss_pred --CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC----CCCCCCCCEEEEEeCCccHHHHHHHHHhc--C
Q 009224 192 --GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG----ASPLFKGQVLAVVGGGDTATEEAIYLTKF--A 263 (540)
Q Consensus 192 --~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~----~~~~~~~k~v~VvG~G~~a~e~a~~l~~~--g 263 (540)
....+.+++||+|||..|..|..++ +....+|...+.+. ......+|+|+|||+|.+|+|++..|++. +
T Consensus 195 ~g~~~~~~ar~vVlatG~~P~iP~~~~---~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~ 271 (501)
T 4b63_A 195 TGEISARRTRKVVIAIGGTAKMPSGLP---QDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPN 271 (501)
T ss_dssp TCCEEEEEEEEEEECCCCEECCCTTSC---CCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTT
T ss_pred CceEEEEEeCEEEECcCCCCCCCCCCC---CCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCC
Confidence 1246889999999998776665443 33444555444321 11236899999999999999999999865 6
Q ss_pred CeEEEEEecccccc-----------c-------------------------------HHHHHHH--------h-----cC
Q 009224 264 RHVHLLVRREQLRA-----------S-------------------------------RAMQDRV--------F-----NN 288 (540)
Q Consensus 264 ~~v~li~~~~~~~~-----------~-------------------------------~~~~~~~--------l-----~~ 288 (540)
.+|+++.|++.+.+ . ...++++ + ..
T Consensus 272 ~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~ 351 (501)
T 4b63_A 272 SRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQ 351 (501)
T ss_dssp CEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred ceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccc
Confidence 79999999864321 0 0000000 0 01
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEE-------ccCCceEEEEccEEEEecccccCcc--ccc--cceeccCCCCEE
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRK-------VDTGEESVLEAKGLFYGIGHSPNSQ--LLQ--GQVELDSSGYVI 357 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~-------~~~g~~~~i~~D~vi~a~G~~p~~~--~~~--~~~~~~~~g~i~ 357 (540)
....+..+..+..+..........+.+.. ...++++++++|.||+|||++++.. ++. ..+..|.+|...
T Consensus 352 ~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~ 431 (501)
T 4b63_A 352 WQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWK 431 (501)
T ss_dssp CSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCC
T ss_pred cceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCee
Confidence 12345556666666544332111222221 1124467799999999999998853 222 135566777787
Q ss_pred eCCCccc-------cCCCceEEcccc
Q 009224 358 VEEGTAK-------TSVEGVFAAGDV 376 (540)
Q Consensus 358 vd~~~~~-------t~~~~iya~GD~ 376 (540)
|+.+++. ...++||+.|-+
T Consensus 432 v~rdy~~~~~~~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 432 PHRDYRVEMDPSKVSSEAGIWLQGCN 457 (501)
T ss_dssp BCTTSBBCCCTTTBCTTCEEEECSCC
T ss_pred eCCCcEEeecCCccCCCceEEecCCC
Confidence 8766522 124679999844
No 94
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=99.87 E-value=4.6e-22 Score=167.92 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=95.3
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
+....+..+|++.+.+ .++++++.||++||+||+.+.|.|+++++++.+++.|+++|+|++++++++|+|.++||++||
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 4456678889988874 789999999999999999999999999999988899999999999999999999999999999
Q ss_pred eCCeEE--E-------EeeCCCC-HHHHHHHHHhh
Q 009224 515 KNKEMI--R-------TVPGVKM-KKEYREFIEAN 539 (540)
Q Consensus 515 ~~g~~~--~-------~~~g~~~-~~~~~~~i~~~ 539 (540)
++|+.+ . +..|..+ .++|+++|+++
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 999988 5 8999987 99999999875
No 95
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.87 E-value=2.5e-21 Score=156.78 Aligned_cols=100 Identities=26% Similarity=0.521 Sum_probs=91.9
Q ss_pred ecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
+..+.++|++.+.. .+++++++||++||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|+++||+++|++
T Consensus 4 ~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~ 82 (105)
T 3zzx_A 4 QVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82 (105)
T ss_dssp ECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHHHHHHcCCCeecEEEEEEC
Confidence 45677888888865 47899999999999999999999999999997 59999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++.++.|. +.++|.++|+++
T Consensus 83 G~~v~~~~G~-~~~~l~~~i~k~ 104 (105)
T 3zzx_A 83 GQKLDSLSGA-NYDKLLELVEKN 104 (105)
T ss_dssp TEEEEEEESC-CHHHHHHHHHHH
T ss_pred CEEEEEEeCc-CHHHHHHHHHhc
Confidence 9999999995 788999999986
No 96
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=99.86 E-value=9.2e-22 Score=163.88 Aligned_cols=99 Identities=12% Similarity=0.242 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCC--hhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTC--GPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C--~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
+.+|.+.+.+.+++++++||++|| ++|+.+.|.+++++++|.++++|+++|+|++++++.+|+|+++||++||+||++
T Consensus 22 ~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~~ 101 (137)
T 2qsi_A 22 EATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERT 101 (137)
T ss_dssp TTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCEE
T ss_pred HhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCEE
Confidence 567888887777799999999999 999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.+..|..+.++|.++|++++
T Consensus 102 v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 102 LGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999998753
No 97
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=99.84 E-value=3e-21 Score=161.47 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=92.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCC-eEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFDEN-VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
++.+|.+.+. ++++++++||++| |++|+.+.|.+++++++|.++ ++|+++|+|++++++.+|+|+++||+++|+||
T Consensus 23 t~~~F~~~v~-~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G 101 (140)
T 2qgv_A 23 SESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGG 101 (140)
T ss_dssp CHHHHHHHHH-TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETT
T ss_pred CHHHHHHHHh-CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 4677888885 7778999999999 999999999999999999888 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++.+..|..+.++|.++|++++
T Consensus 102 ~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 102 NYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCHHHHHHHHHHHh
Confidence 99999999999999999998763
No 98
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.80 E-value=4.8e-19 Score=146.78 Aligned_cols=100 Identities=21% Similarity=0.489 Sum_probs=92.4
Q ss_pred cCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 439 HKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 439 ~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|.++||+++|++|
T Consensus 16 ~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 94 (116)
T 3qfa_C 16 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94 (116)
T ss_dssp CCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEESSS
T ss_pred CCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEEEEEeCC
Confidence 3457788887754 788999999999999999999999999999976 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++.++.|. +.++|.++|+++|
T Consensus 95 ~~~~~~~G~-~~~~l~~~l~~~l 116 (116)
T 3qfa_C 95 QKVGEFSGA-NKEKLEATINELV 116 (116)
T ss_dssp SEEEEEESC-CHHHHHHHHHHHC
T ss_pred eEEEEEcCC-CHHHHHHHHHHhC
Confidence 999999999 9999999999875
No 99
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.80 E-value=3e-19 Score=160.53 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=123.5
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------------------cHHHHHHHhcCCCeEEEeCceEEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------SRAMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------~~~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
+++|||+|++|+++|..|++.|.+|+++++.+.+.. ......+.+++.|++++.+ ++.++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 699999999999999999999999999998764331 2334445567789999999 99999
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcch
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR 382 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~ 382 (540)
..++++ +.+.. .++ ++++|.||+|+|..|+. .-..+++++ +|++.||+++ +|+.|+|||+|||+..+.+
T Consensus 82 ~~~~~~----~~v~~-~~g---~i~ad~vI~A~G~~~~~-~~~~g~~~~-~g~i~vd~~~-~t~~~~i~a~GD~~~~~~~ 150 (180)
T 2ywl_A 82 RDMGGV----FEVET-EEG---VEKAERLLLCTHKDPTL-PSLLGLTRR-GAYIDTDEGG-RTSYPRVYAAGVARGKVPG 150 (180)
T ss_dssp EECSSS----EEEEC-SSC---EEEEEEEEECCTTCCHH-HHHHTCCEE-TTEECCCTTC-BCSSTTEEECGGGGTCCSC
T ss_pred EEcCCE----EEEEE-CCC---EEEECEEEECCCCCCCc-cccCCCCcc-CceEEeCCCC-CcCCCCEEEeecccCcchh
Confidence 876542 33332 223 69999999999999853 112356777 8999999998 8999999999999997545
Q ss_pred hhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 383 QAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.+..|..+|+.||.+|...+.++..
T Consensus 151 ~~~~A~~~g~~aa~~i~~~~~~~~~ 175 (180)
T 2ywl_A 151 HAIISAGDGAYVAVHLVSDLRGEPY 175 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hHHHHHHhHHHHHHHHHHHhhhccc
Confidence 8899999999999999999887643
No 100
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.80 E-value=6.4e-19 Score=144.71 Aligned_cols=100 Identities=19% Similarity=0.420 Sum_probs=94.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 57788888877889999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHh
Confidence 99999999999999998863
No 101
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=99.80 E-value=1e-19 Score=148.04 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=78.5
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
++|.+.+ +.+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|++|+.+.+
T Consensus 9 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 86 (105)
T 4euy_A 9 EELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEILR 86 (105)
T ss_dssp -CCSSST-TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEEETTEEEEE
T ss_pred HHHHHHH-hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEEEE
Confidence 3344433 567899999999999999999999999999995 79999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhC
Q 009224 523 VPGVKMKKEYREFIEANK 540 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~l 540 (540)
+.|..+.++|.++|++++
T Consensus 87 ~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 87 ESRFISLENLERTIQLFE 104 (105)
T ss_dssp EESSCCHHHHHHHHHTTC
T ss_pred EeCCcCHHHHHHHHHHhh
Confidence 999999999999999875
No 102
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.6e-22 Score=196.68 Aligned_cols=254 Identities=17% Similarity=0.143 Sum_probs=164.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHH--cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAAR--ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~--~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+||+|||||||||+||++|++ .|++|+|||+.+. +||.+...... ++ ...+.......++++|+
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~---~GG~~~~~~~~-----~~----~~~l~~~~~~~~~e~Gv 131 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA---PGGGSWLGGQL-----FS----AMVMRKPAHLFLQELEI 131 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS---CCTTTTCCSTT-----CC----CEEEETTTHHHHHHTTC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCC---CCceEEeCCcc-----CC----HHHHHHHHHHHHHHcCC
Confidence 45899999999999999999975 4999999999887 88876643211 11 11111223455677888
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCc
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGD 250 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~ 250 (540)
++..+ +......+.++++++..++.+.+||...+.......+..++.. ...+++++++|+|.
T Consensus 132 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viggg~ 193 (326)
T 3fpz_A 132 PYEDE----------------GDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPT--EKGEVTVAGVVTNW 193 (326)
T ss_dssp CCEEC----------------SSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEEESSC--SSSSCEEEEEEEEE
T ss_pred EEEEC----------------CcceecceeEEEEcchhhhccccccceeecccccceeeccCCc--ccCCCEEEEEccCc
Confidence 76543 1223345566777777777788899887777666666666553 36789999999999
Q ss_pred cHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccE
Q 009224 251 TATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKG 330 (540)
Q Consensus 251 ~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~ 330 (540)
++++.|..+.+.+.++++..+......... +..... .+.+..... +... .......+.+|.
T Consensus 194 ~av~~a~~~~~~~~~v~i~~~~~~~~~~~~-----~~~~~~------~~~~~~g~~-~~~~-------~~~~~~~~~~~~ 254 (326)
T 3fpz_A 194 TLVTQAHGTQCAMDPNVIELAGYKNDGTRD-----LSQKHG------VILSTTGHD-GPFG-------AFCAKRIVDIDQ 254 (326)
T ss_dssp HHHHTCTTSSSCCCCEEEEESCBCTTSSBC-----TTSCCC------EEEECCCSC-SSSC-------SHHHHHHHHHCT
T ss_pred eeeehhhhhhhccCcEEEEeeccccccccc-----ceeecc------eEEEEecce-eeEe-------ecceeEEEecCc
Confidence 999999999999999999887654322110 111100 111111111 0000 001123355677
Q ss_pred EEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCC---c--ch-hhhhhhchHHHHHHHHHHHHh
Q 009224 331 LFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---E--WR-QAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 331 vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~--~~-~~~~A~~~g~~aa~~i~~~l~ 403 (540)
++.+.|.+|...... .+.+.++..+ +|+.|||||+||+++. . ++ ....++.+|+.||..|.++|.
T Consensus 255 ~~~~~g~~~~~~~~~-------e~~iv~~~~~-~t~vpGv~aaGDaa~~v~g~~rmGp~~g~mi~SG~~AAe~I~~~la 325 (326)
T 3fpz_A 255 NQKLGGMKGLDMNHA-------EHDVVIHSGA-YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325 (326)
T ss_dssp TCCCCCCCCBCHHHH-------HHHHHHHCEE-CTTSBTEEECTHHHHHHHTCCBCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecceeccccccc-------CCeEEECCCe-EECCCCEEEEchHhccccCCCcCchHHHHHHHHHHHHHHHHHHHhc
Confidence 777777776433222 1335555555 8999999999999751 0 11 234457789999999999885
No 103
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.79 E-value=1.1e-18 Score=145.40 Aligned_cols=102 Identities=21% Similarity=0.396 Sum_probs=95.3
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..++++|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 17 ~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 96 (119)
T 1w4v_A 17 IQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGD 96 (119)
T ss_dssp CCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred ecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEeCCc
Confidence 44678888888888899999999999999999999999999999878999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++.|..+.++|.++|++++
T Consensus 97 ~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 97 VVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHh
Confidence 9999999999999999998864
No 104
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=99.79 E-value=9e-19 Score=142.89 Aligned_cols=103 Identities=24% Similarity=0.425 Sum_probs=91.5
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
++...+.++|.+.+.+ .+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 81 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTFQFF 81 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence 4445567778888764 78899999999999999999999999999995 699999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+.+.++.|..+ ++|.++|++++
T Consensus 82 ~~G~~~~~~~G~~~-~~l~~~l~~~l 106 (107)
T 1gh2_A 82 RNKVRIDQYQGADA-VGLEEKIKQHL 106 (107)
T ss_dssp ETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred ECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence 99999999999755 55999998763
No 105
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.78 E-value=7.3e-19 Score=152.33 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=94.0
Q ss_pred ecCcHHHHHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...+..+|.+.+. +.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||++++++
T Consensus 7 ~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 86 (149)
T 3gix_A 7 KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN 86 (149)
T ss_dssp EECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred ecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence 3446778888887 678999999999999999999999999999998779999999999999999999999999999999
Q ss_pred CeEE---------EEeeC-CCCHHHHHHHHHhh
Q 009224 517 KEMI---------RTVPG-VKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~---------~~~~g-~~~~~~~~~~i~~~ 539 (540)
|+++ .++.| ..+.++|.++|+++
T Consensus 87 G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 87 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp TEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 9999 89999 89999999999875
No 106
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.78 E-value=1.8e-18 Score=141.06 Aligned_cols=100 Identities=24% Similarity=0.500 Sum_probs=93.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||++++++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 86 (107)
T 1dby_A 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC 86 (107)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE
T ss_pred cHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEE
Confidence 46678888878889999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.+++.++|++++
T Consensus 87 ~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 87 ETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999875
No 107
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.78 E-value=1.6e-18 Score=141.67 Aligned_cols=99 Identities=29% Similarity=0.550 Sum_probs=92.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 9 ~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (108)
T 2trx_A 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 88 (108)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEE
Confidence 45567667778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 89 ~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 89 TKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhh
Confidence 9999999999999998864
No 108
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=99.78 E-value=4.1e-18 Score=138.34 Aligned_cols=102 Identities=22% Similarity=0.523 Sum_probs=93.3
Q ss_pred eecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 437 TKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
.+..+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|++.++||+++|+
T Consensus 3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence 345567778887764 578999999999999999999999999999975 999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+.++.|. +.++|.++|+++|
T Consensus 82 ~g~~~~~~~g~-~~~~l~~~l~~~l 105 (105)
T 3m9j_A 82 KGQKVGEFSGA-NKEKLEATINELV 105 (105)
T ss_dssp TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred CCeEEEEEeCC-CHHHHHHHHHHhC
Confidence 99999999999 9999999999875
No 109
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.78 E-value=1.8e-18 Score=142.34 Aligned_cols=97 Identities=25% Similarity=0.498 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
.++|.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.
T Consensus 8 ~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 85 (112)
T 2voc_A 8 DQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVE 85 (112)
T ss_dssp TTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEE
T ss_pred HHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEE
Confidence 34566666 7889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.+++++++
T Consensus 86 ~~~G~~~~~~l~~~l~~~~ 104 (112)
T 2voc_A 86 TSVGFKPKEALQELVNKHL 104 (112)
T ss_dssp EEESCCCHHHHHHHHHTTS
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 110
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=99.78 E-value=1.8e-18 Score=140.68 Aligned_cols=97 Identities=20% Similarity=0.494 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 10 ~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 10 DADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp TTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred HHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 44566666 7889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 88 ~~~g~~~~~~l~~~l~~~l 106 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKHL 106 (106)
T ss_dssp EEESCCCHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHhC
Confidence 9999999999999999875
No 111
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.78 E-value=3.4e-18 Score=139.94 Aligned_cols=99 Identities=22% Similarity=0.484 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+..+|.+.+ +.+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 11 ~~~~~~f~~~~-~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 88 (109)
T 3f3q_A 11 FKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGK 88 (109)
T ss_dssp CCSHHHHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred CCCHHHHHHHH-hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCccCEEEEEECCE
Confidence 34566777655 458899999999999999999999999999997 4999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++.|. +.++|.++|++++
T Consensus 89 ~~~~~~G~-~~~~l~~~i~~~l 109 (109)
T 3f3q_A 89 EVAKVVGA-NPAAIKQAIAANA 109 (109)
T ss_dssp EEEEEESS-CHHHHHHHHHHHC
T ss_pred EEEEEeCC-CHHHHHHHHHhhC
Confidence 99999999 6689999999875
No 112
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=99.78 E-value=2.4e-18 Score=139.65 Aligned_cols=99 Identities=26% Similarity=0.487 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+...+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||++++++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (105)
T 1fb6_A 7 DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKE 86 (105)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEE
Confidence 45577777777899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 87 ~~~G~~~~~~l~~~l~~~l 105 (105)
T 1fb6_A 87 SIIGAVPKSTLTDSIEKYL 105 (105)
T ss_dssp EEEECCCHHHHHHHHHHHC
T ss_pred EEecCCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 113
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=99.78 E-value=7.6e-18 Score=136.95 Aligned_cols=102 Identities=26% Similarity=0.470 Sum_probs=92.6
Q ss_pred ecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...+.++|.+.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||++++++
T Consensus 4 ~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 83 (106)
T 1xwb_A 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKN 83 (106)
T ss_dssp ECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEcC
Confidence 34455778887765 78899999999999999999999999999997789999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+.+.++.| .+.++|.++|+++|
T Consensus 84 G~~~~~~~g-~~~~~l~~~i~~~l 106 (106)
T 1xwb_A 84 GVKVEEFAG-ANAKRLEDVIKANI 106 (106)
T ss_dssp TEEEEEEES-CCHHHHHHHHHHTC
T ss_pred CcEEEEEcC-CCHHHHHHHHHHhC
Confidence 999999999 68889999999875
No 114
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.78 E-value=3.8e-18 Score=139.51 Aligned_cols=99 Identities=17% Similarity=0.399 Sum_probs=91.4
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+ +++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (109)
T 3tco_A 10 TEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLV 88 (109)
T ss_dssp CTTTHHHHHHH-SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred cHHHHHHHHhc-CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEE
Confidence 34556666654 78999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 89 ~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 89 DSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EeeeccCCHHHHHHHHHHHh
Confidence 99999999999999999875
No 115
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=99.77 E-value=1.8e-18 Score=142.35 Aligned_cols=99 Identities=23% Similarity=0.482 Sum_probs=91.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||++++++|+.+.
T Consensus 12 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 91 (112)
T 1t00_A 12 DDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAK 91 (112)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCCEEEE
Confidence 45566777777899999999999999999999999999999778999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 92 ~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 92 TIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEESCCCHHHHHHHTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
No 116
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=99.77 E-value=2.1e-18 Score=148.07 Aligned_cols=100 Identities=21% Similarity=0.415 Sum_probs=94.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 12 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 91 (140)
T 3hz4_A 12 EDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV 91 (140)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEE
T ss_pred chHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEE
Confidence 46778877888899999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 92 ~~~~G~~~~~~l~~~l~~~l 111 (140)
T 3hz4_A 92 WEQVGQIYPSILKNAVRDML 111 (140)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHh
Confidence 99999999999999998763
No 117
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=99.77 E-value=3.5e-18 Score=139.22 Aligned_cols=99 Identities=21% Similarity=0.485 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (107)
T 2i4a_A 9 DSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVID 88 (107)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEE
Confidence 45567666778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 89 ~~~G~~~~~~l~~~l~~~l 107 (107)
T 2i4a_A 89 KKVGALPKSQLKAWVESAQ 107 (107)
T ss_dssp EEESCCCHHHHHHHHHHTC
T ss_pred EecCCCCHHHHHHHHHhcC
Confidence 9999999999999999875
No 118
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.77 E-value=3.5e-18 Score=140.58 Aligned_cols=103 Identities=20% Similarity=0.463 Sum_probs=92.9
Q ss_pred eecCcHHHHHHHHHh-C--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE-S--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~-~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+...+..+|.+.+.. . +++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++
T Consensus 5 ~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 84 (112)
T 1ep7_A 5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHV 84 (112)
T ss_dssp EEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEEEE
T ss_pred EEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 344566778887765 3 7899999999999999999999999999998789999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+.+.++.|. +.++|.++|++++
T Consensus 85 ~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 85 YKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 9999999999999 8999999998764
No 119
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=99.77 E-value=2.7e-18 Score=149.86 Aligned_cols=98 Identities=21% Similarity=0.420 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+.+ +.+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.
T Consensus 54 ~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~ 132 (155)
T 2ppt_A 54 PAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELA 132 (155)
T ss_dssp HHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 56777777 77889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.+||++++
T Consensus 133 ~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 133 RAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
No 120
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.77 E-value=3.7e-18 Score=138.60 Aligned_cols=97 Identities=21% Similarity=0.449 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
.+|. ...+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.+
T Consensus 8 ~~~~-~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 86 (105)
T 1nsw_A 8 ANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQ 86 (105)
T ss_dssp TTHH-HHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HhHH-HHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEE
Confidence 4466 445667899999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhC
Q 009224 523 VPGVKMKKEYREFIEANK 540 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~l 540 (540)
+.|..+.+++.++|+++|
T Consensus 87 ~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 87 LIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EESCCCHHHHHHHTTTTT
T ss_pred EecCCCHHHHHHHHHHHh
Confidence 999999999999998865
No 121
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=99.77 E-value=1.4e-18 Score=146.50 Aligned_cols=99 Identities=28% Similarity=0.513 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
.++|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.
T Consensus 29 ~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 108 (128)
T 2o8v_B 29 DDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 108 (128)
T ss_dssp TTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEEeCCEEEE
Confidence 45677666778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|+++|
T Consensus 109 ~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 109 TKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHhh
Confidence 9999999999999999864
No 122
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.77 E-value=9.6e-18 Score=140.61 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=91.8
Q ss_pred eecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+...+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++
T Consensus 19 ~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 97 (124)
T 1xfl_A 19 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPTFMF 97 (124)
T ss_dssp EEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred EEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCccCEEEE
Confidence 344456777777755 68899999999999999999999999999997 79999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+++.++.|. +.++|.++|++++
T Consensus 98 ~~~G~~~~~~~G~-~~~~l~~~l~~~l 123 (124)
T 1xfl_A 98 LKEGKILDKVVGA-KKDELQSTIAKHL 123 (124)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred EECCEEEEEEeCC-CHHHHHHHHHHhc
Confidence 9999999999995 8899999999875
No 123
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=99.76 E-value=1.2e-17 Score=135.35 Aligned_cols=100 Identities=28% Similarity=0.510 Sum_probs=91.2
Q ss_pred cCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 439 HKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 439 ~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+.++|.+.+.. .+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|++.++||++++++|
T Consensus 4 i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp CCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred cCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 4455778887765 68899999999999999999999999999997 799999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.+.++.| .+.++|.++|+++|
T Consensus 83 ~~~~~~~G-~~~~~l~~~l~~~l 104 (104)
T 2vim_A 83 KEVDRFSG-ANETKLRETITRHK 104 (104)
T ss_dssp EEEEEEES-SCHHHHHHHHHHHC
T ss_pred cEEEEEeC-CCHHHHHHHHHhhC
Confidence 99999999 58899999999875
No 124
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.76 E-value=8.8e-18 Score=140.48 Aligned_cols=101 Identities=23% Similarity=0.453 Sum_probs=92.0
Q ss_pred ecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 438 KHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 438 ~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
...+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|.++||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 94 (122)
T 2vlu_A 16 SVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFLFM 94 (122)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred eccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence 34456778887765 789999999999999999999999999999986 99999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+++.++.|.. .++|.++|++++
T Consensus 95 ~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 95 KEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp ETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred eCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 9999999999999 999999998763
No 125
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=99.76 E-value=6.5e-18 Score=139.58 Aligned_cols=100 Identities=16% Similarity=0.476 Sum_probs=92.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 92 (115)
T 1thx_A 13 TDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQIL 92 (115)
T ss_dssp CGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred eccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEEcCCEEE
Confidence 35567777777889999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 93 ~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 93 DSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHh
Confidence 99999999999999998763
No 126
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=99.76 E-value=8.2e-18 Score=141.09 Aligned_cols=102 Identities=21% Similarity=0.380 Sum_probs=91.4
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
++...+.++|.+.+ +.+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 21 v~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~ 98 (125)
T 1r26_A 21 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98 (125)
T ss_dssp CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence 34445557788877 778899999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++.++.| .+.++|.++|++++
T Consensus 99 ~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 99 SGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp TTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred CCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 9999999999 58889999998763
No 127
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=99.76 E-value=3e-18 Score=147.18 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=89.5
Q ss_pred ecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...+.++|.+.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++
T Consensus 7 ~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~ 86 (142)
T 1qgv_A 7 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFR 86 (142)
T ss_dssp BCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEET
T ss_pred ccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEEC
Confidence 34567788877765 78999999999999999999999999999997789999999999999999999999999999999
Q ss_pred CeEEE---------EeeCCCC-HHHHHHHHHhh
Q 009224 517 KEMIR---------TVPGVKM-KKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~---------~~~g~~~-~~~~~~~i~~~ 539 (540)
|+++. ++.|..+ .++|.++|+++
T Consensus 87 G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~ 119 (142)
T 1qgv_A 87 NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119 (142)
T ss_dssp TEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence 99887 3555554 88899998875
No 128
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=99.76 E-value=8.9e-18 Score=139.35 Aligned_cols=102 Identities=24% Similarity=0.434 Sum_probs=91.3
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
+++..+.++|.+.+.+ .+++++++||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||++++
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 92 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFIAI 92 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEEEE
Confidence 3444555677777765 7889999999999999999999999999988 799999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+++.++.| .+.++|.++|+++|
T Consensus 93 ~~G~~~~~~~G-~~~~~l~~~l~~~l 117 (117)
T 2xc2_A 93 KNGEKVGDVVG-ASIAKVEDMIKKFI 117 (117)
T ss_dssp ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred eCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence 99999999999 57889999999875
No 129
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=99.76 E-value=1.1e-17 Score=138.01 Aligned_cols=98 Identities=23% Similarity=0.492 Sum_probs=88.0
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+.+.|++.+. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|.++||++++++|+
T Consensus 17 ~~~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 94 (114)
T 2oe3_A 17 LTNLTEFRNLIK-QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQ 94 (114)
T ss_dssp CCSHHHHHHHHH-HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEEEETTE
T ss_pred cCCHHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEEEeCCe
Confidence 344566666554 567999999999999999999999999999976 999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++.|.. .++|.++|+++
T Consensus 95 ~~~~~~G~~-~~~l~~~l~~~ 114 (114)
T 2oe3_A 95 LIGKIIGAN-PTALEKGIKDL 114 (114)
T ss_dssp EEEEEESSC-HHHHHHHHHTC
T ss_pred EEEEEeCCC-HHHHHHHHHhC
Confidence 999999998 89999999864
No 130
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=144.19 Aligned_cols=98 Identities=20% Similarity=0.333 Sum_probs=91.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++. +++.|+.+|++++++++++|+|.++||+++|++|
T Consensus 14 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 93 (133)
T 1x5d_A 14 DDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG 93 (133)
T ss_dssp TTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETT
T ss_pred HhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCC
Confidence 566788777788999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.+.++.|..+.++|.++|+++
T Consensus 94 ~~~~~~~G~~~~~~l~~~l~~~ 115 (133)
T 1x5d_A 94 ESPVDYDGGRTRSDIVSRALDL 115 (133)
T ss_dssp EEEEEECSCCSHHHHHHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHHHH
Confidence 9999999999999999999875
No 131
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=99.75 E-value=4.5e-18 Score=143.40 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=88.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
++.+|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+. +++.|+.+|++++++++++|+|.++||+++|+
T Consensus 21 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 100 (127)
T 3h79_A 21 TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYT 100 (127)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEe
Confidence 3556788887778999999999999999999999999998752 46999999999999999999999999999998
Q ss_pred CCeEE--EEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.. .++.|..+.++|.+||+++
T Consensus 101 ~g~~~~~~~~~G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 101 RIDKQEPFEYSGQRYLSLVDSFVFQN 126 (127)
T ss_dssp SSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred CCCCCCceEecCCccHHHHHHHHHhc
Confidence 88654 5789999999999999875
No 132
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=99.75 E-value=7.4e-18 Score=140.67 Aligned_cols=99 Identities=19% Similarity=0.399 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 19 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 98 (121)
T 2i1u_A 19 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVK 98 (121)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEECCEEEE
Confidence 45567777778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 99 ~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 99 RIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp EEESCCCHHHHHHHTCSCC
T ss_pred EecCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 133
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.3e-17 Score=137.13 Aligned_cols=101 Identities=26% Similarity=0.478 Sum_probs=86.3
Q ss_pred cCcHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHh-CCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 439 HKGQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEF-DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 439 ~~~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
..+.++|.+.+. ..+++++++||++||++|+.+.|.++++++++ ..++.|+.+|++++++++++|+|.++||+++|+
T Consensus 5 i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 84 (112)
T 3d6i_A 5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIH 84 (112)
T ss_dssp ECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEEEEE
Confidence 344577887775 45789999999999999999999999999995 246999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+.++.|.. .++|.++|++++
T Consensus 85 ~G~~~~~~~G~~-~~~l~~~l~~~~ 108 (112)
T 3d6i_A 85 KGTILKELSGAD-PKEYVSLLEDCK 108 (112)
T ss_dssp TTEEEEEECSCC-HHHHHHHHHHHH
T ss_pred CCEEEEEecCCC-HHHHHHHHHHHH
Confidence 999999999985 456999998753
No 134
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=99.75 E-value=7.8e-18 Score=146.02 Aligned_cols=98 Identities=24% Similarity=0.541 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+ ..+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 45 ~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 123 (148)
T 3p2a_A 45 AETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMID 123 (148)
T ss_dssp TTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEECCeEEE
Confidence 45566666 77899999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 124 ~~~G~~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 124 MLNGAVPKAPFDNWLDEQL 142 (148)
T ss_dssp EESSCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
No 135
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=99.75 E-value=1.5e-17 Score=135.88 Aligned_cols=98 Identities=24% Similarity=0.509 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+. .+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 8 ~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (109)
T 2yzu_A 8 DQNFDET-LGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVE 86 (109)
T ss_dssp TTTHHHH-HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HhHHHHH-hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEee
Confidence 4456644 456789999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 87 ~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 87 VLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp EEESCCCHHHHHHHHHTTC
T ss_pred eEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999865
No 136
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=99.74 E-value=1.1e-17 Score=139.65 Aligned_cols=104 Identities=24% Similarity=0.489 Sum_probs=94.1
Q ss_pred eeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 435 TCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN-VHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
......+.++|.+.+ +.+++++++||++||++|+.+.|.++++++++.++ +.|+.+|++++++++++|+|.++||+++
T Consensus 16 ~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 94 (121)
T 2j23_A 16 SVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94 (121)
T ss_dssp CEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred ceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence 344556778888877 77889999999999999999999999999988754 9999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|++|+++.++.|. +.++|.++|++++
T Consensus 95 ~~~G~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 95 FKNGQKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp EETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred EECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence 9999999999999 9999999999875
No 137
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=99.74 E-value=6.7e-18 Score=139.10 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=83.1
Q ss_pred HHHHHHHHHhCCC--eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPR--LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
.++|.+.+.+..+ +++++||++||++|+.+.|.+++++++|+ +++|+++|+++. +++|+|+++||+++|++|++
T Consensus 10 ~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~---~~~~~v~~~PT~~~fk~G~~ 85 (118)
T 3evi_A 10 GNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC---IQHYHDNCLPTIFVYKNGQI 85 (118)
T ss_dssp GGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT---STTCCGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HHHCCCCCCCEEEEEECCEE
Confidence 4567777766554 99999999999999999999999999997 599999999986 58999999999999999999
Q ss_pred EEEeeCCC-------CHHHHHHHHHhh
Q 009224 520 IRTVPGVK-------MKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~-------~~~~~~~~i~~~ 539 (540)
+.++.|.. +.++++.+|.++
T Consensus 86 v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 86 EAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp EEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred EEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 99999875 688899998763
No 138
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.74 E-value=2.6e-17 Score=135.34 Aligned_cols=98 Identities=21% Similarity=0.495 Sum_probs=90.3
Q ss_pred CcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 440 KGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
.+..+|.+.+. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||++++++|+.
T Consensus 14 ~~~~~f~~~~~-~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 91 (112)
T 1syr_A 14 TSQAEFDSIIS-QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS 91 (112)
T ss_dssp CSHHHHHHHHH-HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred CCHHHHHHHHc-cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHHHHHHcCCCcccEEEEEECCcE
Confidence 35677888764 67899999999999999999999999999987 59999999999999999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|. +.++|.++|++++
T Consensus 92 ~~~~~G~-~~~~l~~~l~~~l 111 (112)
T 1syr_A 92 VDTLLGA-NDSALKQLIEKYA 111 (112)
T ss_dssp EEEEESC-CHHHHHHHHHTTC
T ss_pred EEEEeCC-CHHHHHHHHHHhh
Confidence 9999999 9999999999875
No 139
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=99.74 E-value=2e-17 Score=135.67 Aligned_cols=96 Identities=17% Similarity=0.362 Sum_probs=88.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+.+|.+.+. +++++++||++||++|+.+.|.++++++++. .++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 12 ~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 12 ENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp TTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred hhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 455667666 7799999999999999999999999999875 36999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.+.++.|..+.++|.++|++.
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~ 110 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQ 110 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred EEEeccCCcCHHHHHHHHHhc
Confidence 999999999999999999875
No 140
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.74 E-value=1.2e-17 Score=140.87 Aligned_cols=90 Identities=13% Similarity=0.339 Sum_probs=85.5
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCH
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 529 (540)
...+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.++.|..+.
T Consensus 39 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 118 (128)
T 3ul3_B 39 NMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSS 118 (128)
T ss_dssp TSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCH
T ss_pred HccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecCCCCH
Confidence 45678999999999999999999999999999987899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 009224 530 KEYREFIEAN 539 (540)
Q Consensus 530 ~~~~~~i~~~ 539 (540)
++|.++|+++
T Consensus 119 ~~l~~~l~~~ 128 (128)
T 3ul3_B 119 NDLIALIKKH 128 (128)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 9999999864
No 141
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=99.74 E-value=2e-17 Score=133.85 Aligned_cols=97 Identities=26% Similarity=0.492 Sum_probs=88.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+ +.+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 6 ~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 83 (104)
T 2e0q_A 6 SKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVD 83 (104)
T ss_dssp TTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEE
T ss_pred HHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhh
Confidence 34566666 5578999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|++++
T Consensus 84 ~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 84 EIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
No 142
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=99.73 E-value=4.4e-17 Score=142.05 Aligned_cols=102 Identities=22% Similarity=0.398 Sum_probs=91.0
Q ss_pred eecCcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 437 TKHKGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
....+.++|.+.+.+. +++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 15 ~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 93 (153)
T 2wz9_A 15 EEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93 (153)
T ss_dssp EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCCCEEEEEE
Confidence 3444567788877664 7899999999999999999999999999985 6999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++.++.|. +.++|.++|++++
T Consensus 94 ~G~~~~~~~G~-~~~~l~~~i~~~l 117 (153)
T 2wz9_A 94 NSQKIDRLDGA-HAPELTKKVQRHA 117 (153)
T ss_dssp TTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred CCEEEEEEeCC-CHHHHHHHHHHHh
Confidence 99999999996 6778999998764
No 143
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=99.73 E-value=1.8e-17 Score=135.86 Aligned_cols=96 Identities=17% Similarity=0.370 Sum_probs=86.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.++| +.+ ..+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 9 ~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 9 TEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp GGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred CHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 45556 433 456899999999999999999999999999986 699999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
.++.|..+.++|.++++++
T Consensus 86 ~~~~G~~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASI 104 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 9999999999999999875
No 144
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.73 E-value=3.7e-17 Score=134.57 Aligned_cols=102 Identities=23% Similarity=0.484 Sum_probs=91.3
Q ss_pred eecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
++..+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|++.++||+++
T Consensus 7 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 85 (113)
T 1ti3_A 7 IACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPTFIF 85 (113)
T ss_dssp EEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTEEEE
T ss_pred eEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcccEEEE
Confidence 444567778887765 57899999999999999999999999999997 79999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+++.++.| .+.++|.++|++++
T Consensus 86 ~~~G~~~~~~~g-~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 86 LKDGKLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp EETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred EeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence 999999999999 47788999998763
No 145
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=99.73 E-value=3.5e-17 Score=135.88 Aligned_cols=97 Identities=26% Similarity=0.489 Sum_probs=88.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC----
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN---- 516 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~---- 516 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++ +++.|+.+|++++++++++|+|.++||+++|++
T Consensus 11 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 89 (118)
T 2f51_A 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNE 89 (118)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTE
T ss_pred CHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCCCc
Confidence 567788777777899999999999999999999999999999 679999999999999999999999999999988
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++.++.|..+. +|+++++++
T Consensus 90 G~~~~~~~G~~~~-~l~~~~~~~ 111 (118)
T 2f51_A 90 IKTLDQFVGADVS-RIKADIEKF 111 (118)
T ss_dssp EEEEEEEESCCHH-HHHHHHHHH
T ss_pred ceEEEeecCCCHH-HHHHHHHHh
Confidence 9999999999765 599998875
No 146
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.73 E-value=2.9e-17 Score=141.10 Aligned_cols=99 Identities=21% Similarity=0.439 Sum_probs=89.8
Q ss_pred cHHHHHHHHHh-----------CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCccc
Q 009224 441 GQYALRKLYHE-----------SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTP 509 (540)
Q Consensus 441 ~~~~~~~~~~~-----------~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 509 (540)
+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++|
T Consensus 28 ~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~P 107 (141)
T 3hxs_A 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIP 107 (141)
T ss_dssp CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcC
Confidence 46667777765 5789999999999999999999999999999888999999999999999999999999
Q ss_pred EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 510 CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 510 t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++| ++|+.+ ++.|..+.++|.++|+++|
T Consensus 108 t~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l 138 (141)
T 3hxs_A 108 TIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVL 138 (141)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHTT
T ss_pred EEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHH
Confidence 99999 667665 8999999999999999875
No 147
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=99.73 E-value=2.8e-17 Score=141.01 Aligned_cols=98 Identities=21% Similarity=0.461 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.++ ++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 40 ~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 118 (140)
T 1v98_A 40 EKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVA 118 (140)
T ss_dssp ---------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEE
Confidence 4556776666666 999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 119 ~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 119 TWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 148
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=141.51 Aligned_cols=98 Identities=16% Similarity=0.303 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE-E
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM-I 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~ 520 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+.+.|+.+|++++++++++|+|.++||+++|++|+. +
T Consensus 24 ~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~~~~ 103 (130)
T 2dml_A 24 PSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKP 103 (130)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEESSCTTSC
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEeCCCCeE
Confidence 456777777788999999999999999999999999999998789999999999999999999999999999977765 7
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
.++.|..+.++|.+++.+.
T Consensus 104 ~~~~G~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 104 EDYQGGRTGEAIVDAALSA 122 (130)
T ss_dssp EECCSCCSHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHH
Confidence 8899999999999999875
No 149
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=99.72 E-value=2.8e-17 Score=134.89 Aligned_cols=96 Identities=22% Similarity=0.426 Sum_probs=86.7
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
.++|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++ ++++++++|+|.++||++++++|+.
T Consensus 12 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 90 (111)
T 2pu9_C 12 KDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 90 (111)
T ss_dssp TTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSSE
T ss_pred hHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-CeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcE
Confidence 3556777754 67899999999999999999999999999997 4999999998 7899999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++.|.. .++|.++|+++
T Consensus 91 ~~~~~G~~-~~~l~~~l~~~ 109 (111)
T 2pu9_C 91 VGEVTGAK-YDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSC-HHHHHHHHHHH
T ss_pred EEEEcCCC-HHHHHHHHHHh
Confidence 99999985 88899999876
No 150
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.72 E-value=6.2e-17 Score=134.33 Aligned_cols=102 Identities=24% Similarity=0.458 Sum_probs=91.1
Q ss_pred eecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
++..+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|++.++||+++
T Consensus 9 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 87 (118)
T 2vm1_A 9 IACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMPTFLF 87 (118)
T ss_dssp EECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBSEEEE
T ss_pred EEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCcEEEE
Confidence 444566777877755 57899999999999999999999999999997 69999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+.+.++.|. +.++|.++|++++
T Consensus 88 ~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 88 IKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 9999999999995 7889999998753
No 151
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=99.72 E-value=5.8e-18 Score=141.66 Aligned_cols=99 Identities=29% Similarity=0.550 Sum_probs=86.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCCh--------------hhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCc
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCG--------------PCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMG 507 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~--------------~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~ 507 (540)
..+|.+.+.+.+++++++||++||+ +|+.+.|.++++++++.+++.|+.+|++++++++++|+|.+
T Consensus 10 ~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 89 (123)
T 1oaz_A 10 DDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 89 (123)
T ss_dssp STTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGGTCCB
T ss_pred hhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc
Confidence 4557777778899999999999999 99999999999999998789999999999999999999999
Q ss_pred ccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+||+++|++|+.+.++.|..+.++|.++|+++|
T Consensus 90 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 90 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp SSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred cCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999875
No 152
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.72 E-value=3e-17 Score=140.06 Aligned_cols=98 Identities=22% Similarity=0.423 Sum_probs=89.2
Q ss_pred cHHHHHHHHHh-----------CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCccc
Q 009224 441 GQYALRKLYHE-----------SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTP 509 (540)
Q Consensus 441 ~~~~~~~~~~~-----------~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 509 (540)
++.+|.+.+.. .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++|
T Consensus 15 ~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 94 (136)
T 2l5l_A 15 TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIP 94 (136)
T ss_dssp CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSC
T ss_pred cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCC
Confidence 35677777653 5689999999999999999999999999999878999999999999999999999999
Q ss_pred EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 510 CVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 510 t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++| ++|+++ ++.|..+.++|.++|+++
T Consensus 95 t~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~ 124 (136)
T 2l5l_A 95 SILFIPMEGKPE-MAQGAMPKASFKKAIDEF 124 (136)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEE-EEeCCCCHHHHHHHHHHH
Confidence 99999 889887 789999999999999875
No 153
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=99.72 E-value=1.1e-17 Score=139.96 Aligned_cols=100 Identities=17% Similarity=0.315 Sum_probs=89.3
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|..+
T Consensus 9 ~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 9 TPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAK 88 (122)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGG
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCcc
Confidence 36677777777889999999999999999999999999999987899999999999999999999999999999776656
Q ss_pred EEeeCC----CCHHHHHHHHHhhC
Q 009224 521 RTVPGV----KMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~----~~~~~~~~~i~~~l 540 (540)
.++.|. .+.++|.++|++++
T Consensus 89 ~~~~g~~~~~~~~~~l~~~l~~~l 112 (122)
T 3aps_A 89 KSIWEEQINSRDAKTIAALIYGKL 112 (122)
T ss_dssp TEEEEEEECCSCHHHHHHHHHHHH
T ss_pred ceeeccccCcCCHHHHHHHHHHHH
Confidence 677776 79999999998753
No 154
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.72 E-value=6.1e-17 Score=138.71 Aligned_cols=101 Identities=18% Similarity=0.350 Sum_probs=90.2
Q ss_pred eecCcHHHHHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYH---ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+...+..+|.+.+. ..+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++
T Consensus 27 ~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
T 3d22_A 27 HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKATPTFFF 105 (139)
T ss_dssp EEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEESEEEE
T ss_pred EEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCcccEEEE
Confidence 34445667777664 457899999999999999999999999999995 69999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++|+++.++.|. +.++|.++|+++
T Consensus 106 ~~~G~~~~~~~G~-~~~~l~~~l~~~ 130 (139)
T 3d22_A 106 LRDGQQVDKLVGA-NKPELHKKITAI 130 (139)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EcCCeEEEEEeCC-CHHHHHHHHHHH
Confidence 9999999999999 888999999875
No 155
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.71 E-value=3.4e-17 Score=152.16 Aligned_cols=100 Identities=29% Similarity=0.540 Sum_probs=93.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.++|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 18 t~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 97 (222)
T 3dxb_A 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 97 (222)
T ss_dssp CTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeEE
Confidence 45667887788899999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 98 ~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 98 ATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEESCCCHHHHHHHHHHHS
T ss_pred EEeccccChHHHHHHHHhhc
Confidence 99999999999999999764
No 156
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=99.71 E-value=1.9e-18 Score=179.02 Aligned_cols=280 Identities=18% Similarity=0.202 Sum_probs=161.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----CcceeeccCc------------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMTTTE------------------------------ 141 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~~~~------------------------------ 141 (540)
||+|||||+||++||..|++.|++|+|+||...++. .|+.......
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 799999999999999999999999999999732221 1111000000
Q ss_pred ----c-----ccC---------CCC--C-----CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE---EEEEC
Q 009224 142 ----V-----ENF---------PGF--P-----DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF---TVKSG 192 (540)
Q Consensus 142 ----~-----~~~---------~~~--~-----~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~---~v~~~ 192 (540)
. ... ++. + ....+.++...+.+.+++.|++++.+ .| .+..+++.+ .+...
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~ 159 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKR 159 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeC
Confidence 0 000 010 0 01234567788888888889999988 58 887766644 23223
Q ss_pred CeEEEecEEEEccCCCCCCCCCCCc-ccccCCCeeee-----eecCCCCCCCCC-CEEEEEeCCccHHHHHHHHHhcCCe
Q 009224 193 ERKVKCHSIVFATGATAKRLNLPRE-DEFWSRGISAC-----AICDGASPLFKG-QVLAVVGGGDTATEEAIYLTKFARH 265 (540)
Q Consensus 193 ~~~~~~d~lviAtG~~~~~~~ipg~-~~~~~~~~~~~-----~~~~~~~~~~~~-k~v~VvG~G~~a~e~a~~l~~~g~~ 265 (540)
...+.+|.||+|||+.+..+.++.. ....+.++..+ ...+.. .... ..++++|+| +++++..++..|..
T Consensus 160 ~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e--~~q~~p~~~~~ggg--~~~~ae~~~~~G~~ 235 (472)
T 2e5v_A 160 GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADME--FVQFHPTVTSLDGE--VFLLTETLRGEGAQ 235 (472)
T ss_dssp EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTT--CEEEEEEEECGGGC--CEECCTHHHHTTCE
T ss_pred CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCc--ceEEEeEEEccCCC--ceeeehhhcCCceE
Confidence 3457799999999998766544221 11111111111 111111 0111 234455766 77888888888877
Q ss_pred EEEEEeccccccc-------------HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEE-ccEE
Q 009224 266 VHLLVRREQLRAS-------------RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE-AKGL 331 (540)
Q Consensus 266 v~li~~~~~~~~~-------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~-~D~v 331 (540)
+ +..+.++++.. ...+...+++.+. ++.+.. . +.. + ...++ .|.+
T Consensus 236 ~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~-------~---~~~--~-------~~~~~~~~~~ 294 (472)
T 2e5v_A 236 I-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLS-------K---IED--F-------ERKFPVVAKY 294 (472)
T ss_dssp E-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECT-------T---CTT--H-------HHHCHHHHHH
T ss_pred E-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEecc-------c---hHH--H-------HHHhHHHHHH
Confidence 7 66666666531 1122222333332 222111 0 000 0 01133 4777
Q ss_pred EEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc----hhhhhhhchHHHHHHHHHHHHh
Q 009224 332 FYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW----RQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 332 i~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
+++.|..|+ ++++. .......|+|.||.++ +|+.|||||+|||++..+ +....+..+|...+..+.+.+.
T Consensus 295 ~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~-~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~a 369 (472)
T 2e5v_A 295 LARHGHNYK-VKIPIFPAAHFVDGGIRVNIRG-ESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVD 369 (472)
T ss_dssp HHHTTCCTT-SCEECEEEEEEESCEEECCTTC-BCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTTT
T ss_pred HHHhCcCcc-cceEeehhhceeCCCeEECCCC-ccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 888999999 65542 1223446889999998 999999999999987212 3455556665555555544443
No 157
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=99.71 E-value=5e-17 Score=137.97 Aligned_cols=102 Identities=20% Similarity=0.453 Sum_probs=88.9
Q ss_pred eeecCcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
+++..+.++|.+.+.+. +++++++||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||+++|
T Consensus 22 v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp EEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred EEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCEEEEE
Confidence 44455566777777554 579999999999999999999999998887 599999999999999999999999999999
Q ss_pred e--CCe--EEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 K--NKE--MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~--~g~--~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +|+ ++.++.|. +.++|.++|++++
T Consensus 100 ~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l 128 (133)
T 3cxg_A 100 FNLNNEWVLVHTVEGA-NQNDIEKAFQKYC 128 (133)
T ss_dssp EEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred EecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence 7 898 88899998 8899999998864
No 158
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=4.4e-17 Score=139.80 Aligned_cols=98 Identities=15% Similarity=0.350 Sum_probs=87.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN---VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
+..+|.+.+ ..+++++++||++||++|+.+.|.|+++++++.++ +.|+.+|++++.+++++|+|.++||+++|++|
T Consensus 23 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G 101 (140)
T 2dj1_A 23 NDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG 101 (140)
T ss_dssp CTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEEEECC
Confidence 355677655 45789999999999999999999999999998654 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +.++.|..+.++|.++|++++
T Consensus 102 ~-~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 102 Q-AVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp E-EEECCSCCCHHHHHHHHHHHH
T ss_pred c-EEEcCCCCCHHHHHHHHHHhc
Confidence 8 778999999999999998763
No 159
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=99.71 E-value=9e-17 Score=134.71 Aligned_cols=97 Identities=23% Similarity=0.470 Sum_probs=86.9
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
+++|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++ ++++++++|+|.++||++++++|+.
T Consensus 25 ~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 103 (124)
T 1faa_A 25 KDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 103 (124)
T ss_dssp TTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEE
T ss_pred chhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-CCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcE
Confidence 3456666654 68899999999999999999999999999997 5999999998 7899999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|.. .+++.++|++++
T Consensus 104 ~~~~~G~~-~~~l~~~i~~~~ 123 (124)
T 1faa_A 104 VGEVTGAK-YDKLLEAIQAAR 123 (124)
T ss_dssp EEEEESSC-HHHHHHHHHHHT
T ss_pred EEEEcCCC-HHHHHHHHHHhh
Confidence 99999986 889999998864
No 160
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=99.71 E-value=2.6e-17 Score=140.23 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=87.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------cCCHHHHHHcCCCcccEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI---------EEDPEIAEAAGIMGTPCV 511 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~---------~~~~~~~~~~~i~~~Pt~ 511 (540)
+..+|.+.+.+ +++++||++||++|+.+.|.+++++++++ +.|+.+|+ +++++++++|+|.++||+
T Consensus 22 ~~~~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~ 96 (135)
T 3emx_A 22 TPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTL 96 (135)
T ss_dssp CHHHHHHHHTS---SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEE
T ss_pred CHHHHHHHhCC---cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeE
Confidence 46778877755 99999999999999999999999999986 89999999 888999999999999999
Q ss_pred EEEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 512 QFFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 512 ~~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|++|+++.++.|..+.+.+.+++++++
T Consensus 97 ~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 97 VFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp EEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999998764
No 161
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=6.8e-17 Score=156.56 Aligned_cols=99 Identities=17% Similarity=0.356 Sum_probs=91.1
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
..+|++++.. .+++++|+||++||++|+.+.|.++++++++.+++.|+.||++++++++++|+|+++||+++|++|+++
T Consensus 14 ~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 93 (287)
T 3qou_A 14 ESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPV 93 (287)
T ss_dssp TTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEEEEETTEEE
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEEEEECCEEE
Confidence 4567776654 488999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.+.+.+++++++
T Consensus 94 ~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 94 DGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp EEEESCCCHHHHHHHHHHHS
T ss_pred EEeeCCCCHHHHHHHHHHHc
Confidence 99999999999999998753
No 162
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=135.61 Aligned_cols=95 Identities=22% Similarity=0.415 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.+|.+++. +.++++||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++|+|.++||+++|++|+ +
T Consensus 14 ~~~f~~~~~---~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~-~ 89 (126)
T 1x5e_A 14 DENWRELLE---GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDGE-F 89 (126)
T ss_dssp TTTHHHHTS---SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred HHHHHHHhC---CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEEeCCe-E
Confidence 455665442 3489999999999999999999999999875 7999999999999999999999999999999998 5
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 90 ~~~~G~~~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 90 RRYQGPRTKKDFINFISDKE 109 (126)
T ss_dssp EECCSCCCHHHHHHHHHTCG
T ss_pred EEeecCCCHHHHHHHHHHHh
Confidence 78999999999999998753
No 163
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.69 E-value=1.3e-16 Score=134.10 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=85.0
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE--CcCCHHHHHHcCCCcccEEEEEe-CCeEEEEeeCC
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID--IEEDPEIAEAAGIMGTPCVQFFK-NKEMIRTVPGV 526 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd--~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~ 526 (540)
...+++++++||++||++|+.+.|.++++++++.+++.|+.+| ++++++++++|+|.++||+++|+ +|+++.++.|.
T Consensus 23 ~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~ 102 (126)
T 2l57_A 23 AKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGL 102 (126)
T ss_dssp CCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESC
T ss_pred HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCC
Confidence 3457899999999999999999999999999997789999999 99999999999999999999997 99999999999
Q ss_pred CCHHHHHHHHHhhC
Q 009224 527 KMKKEYREFIEANK 540 (540)
Q Consensus 527 ~~~~~~~~~i~~~l 540 (540)
.+.++|.++|++++
T Consensus 103 ~~~~~l~~~l~~~~ 116 (126)
T 2l57_A 103 MRKNNIETILNSLG 116 (126)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999764
No 164
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.68 E-value=8e-17 Score=136.85 Aligned_cols=92 Identities=20% Similarity=0.314 Sum_probs=84.7
Q ss_pred HHHhCCCeEEEEEECCCChhhhhhhHHHH--HHHHHhCCCeEEEEEEC---cCCHHHHHHcCC---CcccEEEEE-eCCe
Q 009224 448 LYHESPRLICVLYTSPTCGPCRTLKPILG--KVIDEFDENVHFVEIDI---EEDPEIAEAAGI---MGTPCVQFF-KNKE 518 (540)
Q Consensus 448 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~--~~~~~~~~~~~~~~vd~---~~~~~~~~~~~i---~~~Pt~~~~-~~g~ 518 (540)
.....+++++++||++||++|+.+.|.|+ ++.+.+.+++.|+.+|+ +++++++++|+| .++||+++| ++|+
T Consensus 24 ~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~ 103 (133)
T 3fk8_A 24 AGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGK 103 (133)
T ss_dssp HHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSC
T ss_pred HHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCC
Confidence 33466889999999999999999999999 99999876899999999 999999999999 999999999 8999
Q ss_pred EEEEeeC-------CCCHHHHHHHHHhh
Q 009224 519 MIRTVPG-------VKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g-------~~~~~~~~~~i~~~ 539 (540)
++.+..| ..+.+++.+||+++
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 104 VRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp EEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCCHHHHHHHHHHh
Confidence 9999999 78999999999875
No 165
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-17 Score=141.35 Aligned_cols=96 Identities=10% Similarity=0.214 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCC------cccEEEE
Q 009224 442 QYALRKLYHESP-RLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIM------GTPCVQF 513 (540)
Q Consensus 442 ~~~~~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~------~~Pt~~~ 513 (540)
..+|.+.+.+.+ ++++++||++||++|+.+.|.|+++++++.+ ++.|+.+|++++++++++|+|. ++||+++
T Consensus 14 ~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~ 93 (137)
T 2dj0_A 14 DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLIL 93 (137)
T ss_dssp TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEEE
T ss_pred HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEEE
Confidence 566777776554 5999999999999999999999999999975 7999999999999999999999 9999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHH
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
|++|+++.++.|..+.++|.+|++
T Consensus 94 ~~~G~~~~~~~G~~~~~~l~~~l~ 117 (137)
T 2dj0_A 94 FQGGKEAMRRPQIDKKGRAVSWTF 117 (137)
T ss_dssp ESSSSEEEEESCBCSSSCBCCCCC
T ss_pred EECCEEEEEecCcCchHHHHHHHh
Confidence 999999999999887766665554
No 166
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=99.68 E-value=6.4e-17 Score=134.36 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=80.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC------CHHHHHHcCCCcccEEEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE------DPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~ 514 (540)
+..+|.+.+. .+++++++||++||++|+.+.|.++++++++...+.+ +|++. .++++++|+|.++||+++|
T Consensus 18 ~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~ 94 (118)
T 1zma_A 18 TVVRAQEALD-KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYF--INSEEPSQLNDLQAFRSRYGIPTVPGFVHI 94 (118)
T ss_dssp CHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEE--EETTCGGGHHHHHHHHHHHTCCSSCEEEEE
T ss_pred CHHHHHHHHh-CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEE--EECCCcCcHHHHHHHHHHcCCCCCCeEEEE
Confidence 4566676654 5679999999999999999999999999998655544 44443 3578899999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++|+++.++.|..+.++|.+||++
T Consensus 95 ~~G~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 95 TDGQINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp ETTEEEEECCTTCCHHHHHHHHTC
T ss_pred ECCEEEEEecCCCCHHHHHHHhhC
Confidence 999999999999999999999864
No 167
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.67 E-value=2e-16 Score=145.69 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=91.2
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|...+ ..+++++|+||++||++|+.+.|.++++++++.+++.|+.||++++++++++|+|.++||+++|++|+++
T Consensus 103 ~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 181 (210)
T 3apq_A 103 ERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAA 181 (210)
T ss_dssp CHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCC
T ss_pred cHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCce
Confidence 466677776 5677999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 182 ~~~~G~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 182 VKYNGDRSKESLVAFAMQHV 201 (210)
T ss_dssp EECCSCCCHHHHHHHHHHHH
T ss_pred eEecCCCCHHHHHHHHHHhC
Confidence 99999999999999998753
No 168
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=99.67 E-value=3.7e-16 Score=124.54 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=85.8
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH----HHHHcCCCc-ccE
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE----IAEAAGIMG-TPC 510 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~-~Pt 510 (540)
+.+..+.++|++++.+ +++++++|++.||++|+.+.|.|++++++ +++.|+++|++++.+ ++.+|+|+. .|+
T Consensus 8 ~~~i~s~e~f~~ii~~-~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq 84 (112)
T 3iv4_A 8 AIKLSSIDQFEQVIEE-NKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQ 84 (112)
T ss_dssp EEECCSHHHHHHHHHH-CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSE
T ss_pred eeecCCHHHHHHHHhc-CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCCe
Confidence 3455677888887776 88999999999999999999999999985 479999999999966 799999994 999
Q ss_pred EEEEeCCeEEEE-eeCCCCHHHHHHHHH
Q 009224 511 VQFFKNKEMIRT-VPGVKMKKEYREFIE 537 (540)
Q Consensus 511 ~~~~~~g~~~~~-~~g~~~~~~~~~~i~ 537 (540)
+++|+||+.+.+ -.+.++.+.|.+.++
T Consensus 85 ~il~k~G~~v~~~SH~~I~~~~l~~~~e 112 (112)
T 3iv4_A 85 AFYFVNGEMVWNRDHGDINVSSLAQAEE 112 (112)
T ss_dssp EEEEETTEEEEEEEGGGCSHHHHHHHTC
T ss_pred EEEEECCEEEEEeeccccCHHHHHHhhC
Confidence 999999999976 567889888887653
No 169
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=99.67 E-value=3.3e-17 Score=140.06 Aligned_cols=95 Identities=12% Similarity=0.190 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeE--EEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 443 YALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFDENVH--FVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~--~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
.+|++.+.+.+ .++++||++| |++|+.+.|.|+++++++ +++. |++||++++++++++|+|+++||+++|++|+
T Consensus 25 ~~f~~~i~~~~-~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~ 102 (142)
T 2es7_A 25 STVDDWIKRVG-DGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGK 102 (142)
T ss_dssp C--------CC-SEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC-
T ss_pred ccHHHHHHhCC-CEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCE
Confidence 45666665444 5778898877 999999999999999999 6788 9999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++.|..+.++|.++|+++
T Consensus 103 ~v~~~~G~~~~~~l~~~i~~~ 123 (142)
T 2es7_A 103 LRGALSGIHPWAELLTLMRSI 123 (142)
T ss_dssp ---CEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999875
No 170
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=99.67 E-value=1e-16 Score=133.35 Aligned_cols=98 Identities=17% Similarity=0.484 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+. .+++++++||++||++|+.+.|.++++++++. .++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 14 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 92 (120)
T 1mek_A 14 KSNFAEALA-AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp TTTHHHHHH-HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred hhhHHHHHc-cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCC
Confidence 445666554 56899999999999999999999999999986 36999999999999999999999999999999998
Q ss_pred EE--EEeeCCCCHHHHHHHHHhhC
Q 009224 519 MI--RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~--~~~~g~~~~~~~~~~i~~~l 540 (540)
.+ .++.|..+.++|.++|++++
T Consensus 93 ~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 93 TASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTS
T ss_pred cCCcccccCccCHHHHHHHHHhcc
Confidence 77 88999999999999999864
No 171
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.67 E-value=1.7e-16 Score=160.67 Aligned_cols=116 Identities=21% Similarity=0.377 Sum_probs=83.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-----CcceeeccC---c-cccCC------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-----PGGQLMTTT---E-VENFP------------------ 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-----~gg~~~~~~---~-~~~~~------------------ 146 (540)
.+||+|||||++|+++|..|+++|++|+|+|+.+..+. .+|...... . ...++
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF 83 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence 47999999999999999999999999999999875210 011110000 0 00000
Q ss_pred -------CC-----------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee----CCcEEEEECCeEEEecEEEE
Q 009224 147 -------GF-----------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK----SNPFTVKSGERKVKCHSIVF 203 (540)
Q Consensus 147 -------~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~----~~~~~v~~~~~~~~~d~lvi 203 (540)
++ |.. ...++.+.+.+.+++.|++++.+ +|+.+..+ ++.+.+..++..+++|+||+
T Consensus 84 ~~~~~~~Gi~~~~~~~g~~~p~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VVl 162 (401)
T 2gqf_A 84 ISLVAEQGITYHEKELGQLFCDE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV 162 (401)
T ss_dssp HHHHHHTTCCEEECSTTEEEETT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEE
T ss_pred HHHHHhCCCceEECcCCEEccCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEEE
Confidence 00 111 45677888888899999999987 88888866 56688877666899999999
Q ss_pred ccCCCCC
Q 009224 204 ATGATAK 210 (540)
Q Consensus 204 AtG~~~~ 210 (540)
|||+.+.
T Consensus 163 AtG~~s~ 169 (401)
T 2gqf_A 163 ATGGLSM 169 (401)
T ss_dssp CCCCSSC
T ss_pred CCCCccC
Confidence 9998763
No 172
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=3.9e-16 Score=132.79 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=84.6
Q ss_pred cHHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+..+|.+.+.+. +++++++||++||++|+.+.|.|+++++++. ++.|+.||++++. ++|+|.++||+++|++|+
T Consensus 16 ~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt~~~~~~G~ 91 (135)
T 2dbc_A 16 SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPTIFVYKNGQ 91 (135)
T ss_dssp CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSEEEEESSSS
T ss_pred CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCEEEEEECCE
Confidence 567788877654 3699999999999999999999999999996 6999999999875 689999999999999999
Q ss_pred EEEEeeCCC-------CHHHHHHHHHhh
Q 009224 519 MIRTVPGVK-------MKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~-------~~~~~~~~i~~~ 539 (540)
++.++.|.. +.++|+++|+++
T Consensus 92 ~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 92 IEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp CSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred EEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 999999986 788899999864
No 173
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=99.46 E-value=1.1e-17 Score=135.88 Aligned_cols=99 Identities=26% Similarity=0.564 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++|++++|++|+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 87 (106)
T 2yj7_A 8 DENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVD 87 (106)
Confidence 44566666677889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 88 ~~~g~~~~~~l~~~l~~~l 106 (106)
T 2yj7_A 88 RLVGAQPKEALKERIDKHL 106 (106)
Confidence 9999999999999998865
No 174
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=99.65 E-value=4e-16 Score=121.14 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=77.7
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
.+.++.||++||++|+.+.|.++++++++++++.|+.+|++++++++++|++.++||+++ +|+. ++.|..+.+++.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~ 78 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV 78 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence 468999999999999999999999999998789999999999999999999999999988 8977 889998999999
Q ss_pred HHHHhhC
Q 009224 534 EFIEANK 540 (540)
Q Consensus 534 ~~i~~~l 540 (540)
++|+++|
T Consensus 79 ~~l~~~l 85 (85)
T 1fo5_A 79 EAIKKRL 85 (85)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999875
No 175
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.64 E-value=1.6e-16 Score=128.73 Aligned_cols=87 Identities=11% Similarity=0.191 Sum_probs=72.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC--HHHHHHcCCCcccEEEEEeCCeEEEEeeCCCC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED--PEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKM 528 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 528 (540)
...++|+||++||++|+.+.+.+....+... ..+.++++|++++ .+++.+|+|.++|||+||++|+++.++.|+.+
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~ 97 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG 97 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCC
Confidence 4689999999999999999975543222110 1267889999886 57889999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 009224 529 KKEYREFIEAN 539 (540)
Q Consensus 529 ~~~~~~~i~~~ 539 (540)
.++|.++|+++
T Consensus 98 ~~~f~~~L~~~ 108 (116)
T 3dml_A 98 EDFFWPMLARL 108 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 176
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.5e-15 Score=147.06 Aligned_cols=100 Identities=16% Similarity=0.321 Sum_probs=91.4
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+..+|.+.+.+.+++++|+||++||++|+.+.|.|+++++++.+.+.|+.+|++ +++++|++|+|.++||+++|++|+
T Consensus 23 t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 367788888778899999999999999999999999999999878999999998 789999999999999999999987
Q ss_pred -----------------EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 -----------------MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 -----------------~~~~~~g~~~~~~~~~~i~~~l 540 (540)
....+.|.++.+.|.+|+.+.+
T Consensus 103 ~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~ 141 (298)
T 3ed3_A 103 IDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141 (298)
T ss_dssp C-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred eeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence 4678999999999999998754
No 177
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.64 E-value=4.7e-16 Score=132.22 Aligned_cols=100 Identities=13% Similarity=0.275 Sum_probs=86.8
Q ss_pred cCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEC----cCCHHHHHHcCCCcccE
Q 009224 439 HKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDI----EEDPEIAEAAGIMGTPC 510 (540)
Q Consensus 439 ~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~i~~~Pt 510 (540)
..+..++...+.+ .+++++++||++||++|+.+.|.+ +++.+++. ++.|+.+|+ +++.+++++|+|.++||
T Consensus 16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt 94 (134)
T 2fwh_A 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPT 94 (134)
T ss_dssp CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCE
Confidence 3455666665544 478999999999999999999999 99999987 499999999 55678999999999999
Q ss_pred EEEE-eCCeEE--EEeeCCCCHHHHHHHHHhh
Q 009224 511 VQFF-KNKEMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 511 ~~~~-~~g~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
+++| ++|+++ .++.|..+.++|.++|+++
T Consensus 95 ~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 95 ILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 9999 899988 7899999999999999864
No 178
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=99.63 E-value=4e-16 Score=121.12 Aligned_cols=82 Identities=27% Similarity=0.429 Sum_probs=76.4
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHH
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYRE 534 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 534 (540)
+.++.||++||++|+.+.|.++++++++++++.|+.+|++++++++++|++.++||+++ +|+. ++.|..+.++|.+
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 78 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE 78 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence 45889999999999999999999999998789999999999999999999999999988 8887 8889989999999
Q ss_pred HHHhhC
Q 009224 535 FIEANK 540 (540)
Q Consensus 535 ~i~~~l 540 (540)
+|++.+
T Consensus 79 ~l~~~l 84 (85)
T 1nho_A 79 AINDEM 84 (85)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999875
No 179
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=99.63 E-value=5.3e-16 Score=136.01 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=83.6
Q ss_pred cHHHHHHHHHh-CCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhC-----CCeEEEEEECcCCHHHHHHcCCCc
Q 009224 441 GQYALRKLYHE-SPRLICVLYTS-------PTCGPCRTLKPILGKVIDEFD-----ENVHFVEIDIEEDPEIAEAAGIMG 507 (540)
Q Consensus 441 ~~~~~~~~~~~-~~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~vd~~~~~~~~~~~~i~~ 507 (540)
++.+|.+++.. .+.+++|.||+ +||++|+.+.|.|+++++++. +++.|++||++++++++++|+|++
T Consensus 24 t~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~s 103 (178)
T 3ga4_A 24 TADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQN 103 (178)
T ss_dssp CTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCS
T ss_pred CHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCC
Confidence 35667776654 35689999999 499999999999999999986 789999999999999999999999
Q ss_pred ccEEEEEeCCeEE------------EEe---eC-CCCHHHHHHHHHhh
Q 009224 508 TPCVQFFKNKEMI------------RTV---PG-VKMKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~~~g~~~------------~~~---~g-~~~~~~~~~~i~~~ 539 (540)
+||+++|++|... ..+ .+ ..+.+.|.+||.+.
T Consensus 104 iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~ 151 (178)
T 3ga4_A 104 VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI 151 (178)
T ss_dssp SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence 9999999888422 233 24 67889999999864
No 180
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=99.63 E-value=1.3e-16 Score=133.06 Aligned_cols=95 Identities=17% Similarity=0.397 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-----CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-----NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
.+|.+.+...+++++++||++||++|+.+.|.|+++++++.+ ++.|+.+|+++++ +++ +|.++||+++|++|
T Consensus 15 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~~ 91 (121)
T 2djj_A 15 KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPAG 91 (121)
T ss_dssp TTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECSS
T ss_pred cCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeCc
Confidence 344555456678999999999999999999999999999976 7999999999886 554 99999999999887
Q ss_pred eE--EEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EM--IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~--~~~~~g~~~~~~~~~~i~~~l 540 (540)
.. +.++.|..+.++|.++|++++
T Consensus 92 ~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 92 AKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp CTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred CCCCceEecCCCCHHHHHHHHHhcc
Confidence 44 678899999999999999864
No 181
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=5.1e-17 Score=138.06 Aligned_cols=96 Identities=15% Similarity=0.383 Sum_probs=82.5
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE-
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR- 521 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~- 521 (540)
|.+.+.+.+++++++||++||++|+.+.|.|+++++++. .++.|+.+|+++++.++++|+|.++||+++|++|+.+.
T Consensus 17 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 96 (133)
T 2dj3_A 17 FDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNP 96 (133)
T ss_dssp CCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTTSC
T ss_pred HHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcccc
Confidence 444444557899999999999999999999999999997 46999999999999999999999999999998876442
Q ss_pred -Eee-CCCCHHHHHHHHHhhC
Q 009224 522 -TVP-GVKMKKEYREFIEANK 540 (540)
Q Consensus 522 -~~~-g~~~~~~~~~~i~~~l 540 (540)
++. |..+.++|.++|++++
T Consensus 97 ~~~~gg~~~~~~l~~~l~~~~ 117 (133)
T 2dj3_A 97 IKFEGGNRDLEHLSKFIDEHA 117 (133)
T ss_dssp EECCSSCCSTTHHHHHHHHHS
T ss_pred eEecCCCcCHHHHHHHHHHhc
Confidence 456 6688999999998764
No 182
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=99.62 E-value=2.3e-15 Score=140.33 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCCeE-EEEEECCCChhhhhhhHHHHHHHHHhC----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 442 QYALRKLYHESPRLI-CVLYTSPTCGPCRTLKPILGKVIDEFD----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
+..+.++. +.++++ ++.||++||++|+.+.|.++++++++. +++.|+.+|++++++++++|+|.++||+++|++
T Consensus 123 ~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 201 (226)
T 1a8l_A 123 DETKQAIR-NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVN 201 (226)
T ss_dssp HHHHHHHT-TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEET
T ss_pred HHHHHHHH-hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeC
Confidence 34444443 444555 999999999999999999999999986 579999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+.+.++.|..+.++|.++|++++
T Consensus 202 G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 202 GEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CceeEEEcCCCCHHHHHHHHHHhh
Confidence 999999999999999999998763
No 183
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.62 E-value=2.6e-15 Score=140.44 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCC-----------CCChHHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPD-----------GITGPDLMDRMR 162 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 162 (540)
.+||+|||||++|+++|..|++.|.+|+|+|+... ..|... .. ...++.. .....++...+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~---~~G~~~-~~---~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~ 75 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD---AVMMPF-LP---PKPPFPPGSLLERAYDPKDERVWAFHARAK 75 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG---GTTCCS-SC---CCSCCCTTCHHHHHCCTTCCCHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC---cCCccc-Cc---cccccchhhHHhhhccCCCCCHHHHHHHHH
Confidence 47999999999999999999999999999998732 122111 11 0111110 013446677788
Q ss_pred HHHHHh-CCEEEEeeEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 163 RQAERW-GAELHQEDVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 163 ~~~~~~-~v~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+++. +++++..+|+.+..+++.+ .+.. ++..+++|+||+|+|.....
T Consensus 76 ~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~ 127 (232)
T 2cul_A 76 YLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGA 127 (232)
T ss_dssp HHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred HHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhh
Confidence 888886 9999877999998776653 4544 45689999999999986543
No 184
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=99.61 E-value=1.8e-15 Score=126.53 Aligned_cols=102 Identities=9% Similarity=0.213 Sum_probs=87.0
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhCCCeEEEEEEC-------cCCHHHH
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSP-------TCGPCRTLKPILGKVIDEFDENVHFVEIDI-------EEDPEIA 500 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-------~~~~~~~ 500 (540)
.+...+.++|.+.+.. .+++++++||++ ||++|+.+.|.++++++++.+++.|+.+|+ +++++++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~ 85 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence 3445567888888876 689999999999 999999999999999999977899999999 7889999
Q ss_pred HHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 501 EAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++|+|.++||+++|+++..+....+ .+.++|.++|++
T Consensus 86 ~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~ 122 (123)
T 1wou_A 86 KNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE 122 (123)
T ss_dssp HHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred HHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence 9999999999999988765544444 357789999875
No 185
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=99.61 E-value=9.4e-16 Score=140.93 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=88.9
Q ss_pred cCcHHHHHHHHHhCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 439 HKGQYALRKLYHESP--RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
..+..+|.+.+.+.. ++++|+||++||++|+.+.|.|++++++|. ++.|+.||++ +++++.+|+|.++||+++|++
T Consensus 104 i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PTl~~~~~ 181 (217)
T 2trc_P 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPTLLVYKG 181 (217)
T ss_dssp CCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSEEEEEET
T ss_pred cCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCEEEEEEC
Confidence 335677888887654 899999999999999999999999999996 7999999999 888999999999999999999
Q ss_pred CeEEEEeeCCCCH-------HHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMK-------KEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~-------~~~~~~i~~~ 539 (540)
|+.+.++.|..+. ++|..+|.++
T Consensus 182 G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 182 GELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp TEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred CEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 9999999998774 8899999864
No 186
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=99.61 E-value=9.7e-17 Score=135.68 Aligned_cols=100 Identities=21% Similarity=0.448 Sum_probs=88.3
Q ss_pred cCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 439 HKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 439 ~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
..+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++++
T Consensus 19 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 97 (130)
T 1wmj_A 19 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97 (130)
T ss_dssp CSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCSSCCCCBCT
T ss_pred cCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCccceEEEEe
Confidence 3345666776654 68899999999999999999999999999997 6999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++.++.|. +.++|.++|++++
T Consensus 98 ~g~~~~~~~g~-~~~~l~~~l~~~~ 121 (130)
T 1wmj_A 98 DGAEADKVVGA-RKDDLQNTIVKHV 121 (130)
T ss_dssp TTTCCBCCCTT-CTTTHHHHHHHHT
T ss_pred CCeEEEEEeCC-CHHHHHHHHHHHH
Confidence 99999888895 7788999998764
No 187
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.3e-15 Score=127.23 Aligned_cols=90 Identities=22% Similarity=0.431 Sum_probs=80.9
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEE-eCCeEEEEe
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFF-KNKEMIRTV 523 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~ 523 (540)
...+++++++||++||++|+.+.|.+ +++.+.+..++.++.+|++ ++.+++++|+|.++||+++| ++|+++.++
T Consensus 24 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~ 103 (130)
T 2kuc_A 24 EVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRL 103 (130)
T ss_dssp HHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEE
T ss_pred HhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEe
Confidence 34678999999999999999999999 7777776667889999998 47789999999999999999 799999999
Q ss_pred eCCCCHHHHHHHHHhh
Q 009224 524 PGVKMKKEYREFIEAN 539 (540)
Q Consensus 524 ~g~~~~~~~~~~i~~~ 539 (540)
.|..+.++|.++|+++
T Consensus 104 ~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 104 VGAEDAPELLKKVKLG 119 (130)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999999875
No 188
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=99.59 E-value=4.4e-15 Score=139.79 Aligned_cols=97 Identities=14% Similarity=0.364 Sum_probs=86.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN---VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
++.+|.+.+ ..+++++|+||++||++|+.+.|.++++++++.+. +.|+.+|++++++++++|+|+++||+++|++|
T Consensus 21 ~~~~~~~~~-~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 99 (241)
T 3idv_A 21 NDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG 99 (241)
T ss_dssp CTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred cccCHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCC
Confidence 345566655 55789999999999999999999999999998654 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.+ ++.|..+.++|.+++++.
T Consensus 100 ~~~-~~~g~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 100 QAV-DYEGSRTQEEIVAKVREV 120 (241)
T ss_dssp EEE-ECCSCSCHHHHHHHHHHH
T ss_pred Ccc-cccCcccHHHHHHHHhhc
Confidence 877 589999999999999864
No 189
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=99.59 E-value=3.2e-15 Score=139.01 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=86.5
Q ss_pred cCcHHHHHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 439 HKGQYALRKLYHE--SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
..+..+|.+.+.+ .+++++|+||++||++|+.+.|.|++++++|. .+.|+.||+++ ++++.+|+|.++||+++|++
T Consensus 117 i~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-~v~f~kVd~d~-~~l~~~~~I~~~PTll~~~~ 194 (245)
T 1a0r_P 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP-MVKFCKIKASN-TGAGDRFSSDVLPTLLVYKG 194 (245)
T ss_dssp CCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-TSEEEEEEHHH-HCCTTSSCTTTCSEEEEEET
T ss_pred eCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CCEEEEEeCCc-HHHHHHCCCCCCCEEEEEEC
Confidence 3356778888865 47899999999999999999999999999997 49999999987 77899999999999999999
Q ss_pred CeEEEEeeCCC-------CHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVK-------MKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~-------~~~~~~~~i~~~ 539 (540)
|+.+.++.|.. +.+.|..+|.++
T Consensus 195 G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 195 GELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp TEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred CEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 99999998863 356788888764
No 190
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=149.02 Aligned_cols=97 Identities=20% Similarity=0.398 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHh------CCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEF------DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~------~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
..+|.+.+ +.+++++|.||++||++|+.+.|.|+++++++ .+++.|+.||+++++++|++|+|+++||+++|+
T Consensus 12 ~~~f~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~ 90 (382)
T 2r2j_A 12 TENIDEIL-NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFR 90 (382)
T ss_dssp TTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEE
T ss_pred HHHHHHHH-hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEe
Confidence 45567655 45679999999999999999999999999998 345999999999999999999999999999999
Q ss_pred CCeEEE-EeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMIR-TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~~-~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.+. .+.|.++.+.|.+|+++.
T Consensus 91 ~G~~~~~~~~G~~~~~~l~~~i~~~ 115 (382)
T 2r2j_A 91 NGMMMKREYRGQRSVKALADYIRQQ 115 (382)
T ss_dssp TTEEEEEECCSCCSHHHHHHHHHHH
T ss_pred CCcEeeeeecCcchHHHHHHHHHHh
Confidence 999887 489999999999999875
No 191
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.57 E-value=9e-15 Score=127.39 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=81.4
Q ss_pred HHHHHhCCCeEEEEEE-CCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCH-----------HHHHHcCCCcccE
Q 009224 446 RKLYHESPRLICVLYT-SPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDP-----------EIAEAAGIMGTPC 510 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~~~i~~~Pt 510 (540)
.+.....+++++|+|| ++||++|+.+.|.+ .++.+.++.++.++.+|+++.+ +++++|+|.++||
T Consensus 40 ~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 119 (154)
T 2ju5_A 40 LEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPE 119 (154)
T ss_dssp HHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSE
T ss_pred HHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCE
Confidence 3344456789999999 99999999999999 7887766557999999998764 8999999999999
Q ss_pred EEEE-eCCeEEEEeeCCC--CHHHHHHHHHhhC
Q 009224 511 VQFF-KNKEMIRTVPGVK--MKKEYREFIEANK 540 (540)
Q Consensus 511 ~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~~l 540 (540)
++++ ++|+++.+. |.. +.+++.++|++++
T Consensus 120 ~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 120 LVFIDAEGKQLARM-GFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp EEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHH
Confidence 9999 899999999 998 8999999998753
No 192
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=99.56 E-value=1.2e-14 Score=136.86 Aligned_cols=97 Identities=18% Similarity=0.419 Sum_probs=85.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+. .+++++++||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++|+|+++||+++|++|+
T Consensus 137 ~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 215 (241)
T 3idv_A 137 KENFDEVVN-DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGR 215 (241)
T ss_dssp TTTHHHHHH-HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred HHHHHHhhc-cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCe
Confidence 344555554 456999999999999999999999999999854 3999999999999999999999999999999998
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+. +.|..+.++|.+||++.+
T Consensus 216 ~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 216 PYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEE-CCSCCSHHHHHHHHHHHT
T ss_pred EEE-ecCCCCHHHHHHHHHhhh
Confidence 877 899999999999998753
No 193
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=138.64 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=84.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEC--cCCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDI--EEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.|+++++++.+ .+.|+.+|+ +++++++++|+|+++||+++|+
T Consensus 18 ~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~ 97 (244)
T 3q6o_A 18 QADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFX 97 (244)
T ss_dssp CTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEe
Confidence 35567888888889999999999999999999999999999976 799999999 6789999999999999999998
Q ss_pred CCeEE-----EEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMI-----RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~-----~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.. .++.| .+.+.|.++|.++
T Consensus 98 ~g~~~~~g~~~~~~g-~~~~~l~~~i~~~ 125 (244)
T 3q6o_A 98 AFTXNGSGAVFPVAG-ADVQTLRERLIDA 125 (244)
T ss_dssp TTCCSSSCEECCCTT-CCHHHHHHHHHHH
T ss_pred CCCcCCCCeeEecCC-CCHHHHHHHHHHH
Confidence 74332 15556 5888899998875
No 194
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=99.33 E-value=2.6e-16 Score=133.05 Aligned_cols=94 Identities=18% Similarity=0.342 Sum_probs=83.2
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEC--cCCHHHHHHcCCCcccEEEEE--eCCeE
Q 009224 447 KLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDI--EEDPEIAEAAGIMGTPCVQFF--KNKEM 519 (540)
Q Consensus 447 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~--~~g~~ 519 (540)
+.....+++++++||++||++|+.+.|.+ +++.+.+.+++.|+.+|+ +++.+++++|+|.++||+++| ++|++
T Consensus 13 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~ 92 (130)
T 2lst_A 13 ALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAW 92 (130)
Confidence 44455678999999999999999999999 999998887799999999 466889999999999999999 67988
Q ss_pred --EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 --IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 --~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|..+.++|.++|++++
T Consensus 93 ~~~~~~~G~~~~~~l~~~l~~~~ 115 (130)
T 2lst_A 93 EEVGRLFGSRPRAEFLKELRQVC 115 (130)
Confidence 889999999999999998764
No 195
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=99.55 E-value=1.3e-14 Score=151.15 Aligned_cols=98 Identities=15% Similarity=0.313 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESP---RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~---~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+.+|.+.+ ..+ ++++++||++||++|+.+.|.|+++++++.+.+.|+.||+++++++|++|+|+++||+++|++|+
T Consensus 8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~ 86 (481)
T 3f8u_A 8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE 86 (481)
T ss_dssp TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTE
T ss_pred HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCc
Confidence 45577766 344 89999999999999999999999999999878999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+.++.|.++.+.|.+|+.+.+
T Consensus 87 ~~~~~~G~~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 87 EAGAYDGPRTADGIVSHLKKQA 108 (481)
T ss_dssp EEEECCSCSSHHHHHHHHHHHT
T ss_pred eeeeecCccCHHHHHHHHHhhc
Confidence 9999999999999999998764
No 196
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.55 E-value=3.9e-15 Score=132.42 Aligned_cols=94 Identities=11% Similarity=0.243 Sum_probs=79.2
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHH-----------------------
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEI----------------------- 499 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~----------------------- 499 (540)
.......+++++|+||++||++|+.+.+.+ .++.+.+.+++.|+.+|++++.++
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWS 119 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhh
Confidence 444567789999999999999999985444 555555554699999999987655
Q ss_pred ---HHHcCCCcccEEEEE-eCCeEEEEeeCCCC-HHHHHHHHHhh
Q 009224 500 ---AEAAGIMGTPCVQFF-KNKEMIRTVPGVKM-KKEYREFIEAN 539 (540)
Q Consensus 500 ---~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~-~~~~~~~i~~~ 539 (540)
+++|+|.++||++++ ++|+++.++.|..+ .+++.++|++.
T Consensus 120 ~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 120 YLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG 164 (172)
T ss_dssp HHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence 789999999999999 89999999999998 99999999875
No 197
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=99.54 E-value=2.6e-14 Score=149.75 Aligned_cols=98 Identities=21% Similarity=0.442 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM- 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~- 519 (540)
..+|.+.+ +.+++++|.||++||++|+.+.|.|+++++.+.+ ++.|+.||+++++++|++|+|+++||+++|++|+.
T Consensus 21 ~~~f~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 99 (504)
T 2b5e_A 21 TDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN 99 (504)
T ss_dssp TTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTT
T ss_pred HHHHHHHH-hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCccc
Confidence 45577755 5678999999999999999999999999999987 49999999999999999999999999999999987
Q ss_pred -EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 -IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 -~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|.++.+.|.+|+.+.+
T Consensus 100 ~~~~~~G~~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 100 NSIDYEGPRTAEAIVQFMIKQS 121 (504)
T ss_dssp CEEECCSCCSHHHHHHHHHHHT
T ss_pred cceeecCCCCHHHHHHHHHHhc
Confidence 889999999999999998754
No 198
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=99.53 E-value=4.3e-14 Score=140.73 Aligned_cols=97 Identities=13% Similarity=0.255 Sum_probs=86.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHH-------HHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPI-------LGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQ 512 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-------~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 512 (540)
+..+|.+.+ +.+++++|+||++||+ |+.+.|. ++++++.+.+ ++.|+.|||++++++|++|+|+++||++
T Consensus 17 ~~~~f~~~i-~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~ 94 (350)
T 1sji_A 17 TEKNFKQVL-KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLY 94 (350)
T ss_dssp CHHHHHHHH-TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEE
T ss_pred CHHHHHHHH-hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEE
Confidence 466788766 4578999999999999 9999998 8999999875 5999999999999999999999999999
Q ss_pred EEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 513 FFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 513 ~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|++|+ +..+.|.++.+.|.+|+++.+
T Consensus 95 ~~~~g~-~~~~~G~~~~~~l~~~i~~~~ 121 (350)
T 1sji_A 95 VLKGDR-TIEFDGEFAADVLVEFLLDLI 121 (350)
T ss_dssp EEETTE-EEEECSCCCHHHHHHHHHTTS
T ss_pred EEECCc-EEEecCCCCHHHHHHHHHHhc
Confidence 999998 568999999999999998753
No 199
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=99.51 E-value=5.9e-14 Score=140.37 Aligned_cols=97 Identities=20% Similarity=0.329 Sum_probs=84.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhh------HHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLK------PILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~------~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+..+|.+.+ +.+++++|.||++||++|+... |.++++++.+.+ ++.|++|||++++++|++|+|+++||+++
T Consensus 19 t~~~f~~~i-~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~ 97 (367)
T 3us3_A 19 NAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYV 97 (367)
T ss_dssp CTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CHHHHHHHH-hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEE
Confidence 355677766 4468999999999999974443 688999998875 59999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|++|+.+ .+.|.++.+.|.+|+.+.
T Consensus 98 f~~G~~~-~y~G~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 98 FKEDEVI-EYDGEFSADTLVEFLLDV 122 (367)
T ss_dssp EETTEEE-ECCSCCSHHHHHHHHHHH
T ss_pred EECCcEE-EeCCCCCHHHHHHHHHHh
Confidence 9999875 899999999999999875
No 200
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=99.51 E-value=2.4e-14 Score=121.29 Aligned_cols=97 Identities=9% Similarity=0.083 Sum_probs=86.3
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCc--ccEEEEEeC--
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMG--TPCVQFFKN-- 516 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~--~Pt~~~~~~-- 516 (540)
++.+|.++ .+.+.++++.||++ |++|+.+.|.+++++++|.+++.|+++|.+++++++++|+|++ +||+++|++
T Consensus 12 t~~~f~~~-~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~ 89 (133)
T 2djk_A 12 GPETYSDY-MSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAK 89 (133)
T ss_dssp CHHHHHHH-HHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTT
T ss_pred ChHHHHHH-hcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCc
Confidence 45677766 56778999999999 8999999999999999998899999999999999999999999 999999987
Q ss_pred CeEEEEee--CCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVP--GVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~--g~~~~~~~~~~i~~~l 540 (540)
|++ .+.. |..+.+.|.+|+++++
T Consensus 90 g~~-~~~~~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 90 NQK-FPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp CCB-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred Ccc-cCCCCccccCHHHHHHHHHHHH
Confidence 766 4665 9999999999998763
No 201
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=99.51 E-value=5.5e-14 Score=106.66 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=66.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC-CHHHHHH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK-MKKEYRE 534 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-~~~~~~~ 534 (540)
..+.||++||++|+.+.|.+++++++++.++.++.+| +++++++|+|.++||+++ +|+.+.+ |.. +.++|.+
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~ 74 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK 74 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence 3589999999999999999999999998789999988 789999999999999988 9988766 887 8898888
Q ss_pred HH
Q 009224 535 FI 536 (540)
Q Consensus 535 ~i 536 (540)
+|
T Consensus 75 ~l 76 (77)
T 1ilo_A 75 IL 76 (77)
T ss_dssp HC
T ss_pred Hh
Confidence 75
No 202
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=99.51 E-value=1.1e-13 Score=119.34 Aligned_cols=90 Identities=14% Similarity=0.253 Sum_probs=81.1
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------cCCHHHHHHc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI---------------------------EEDPEIAEAA 503 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~~~ 503 (540)
..+++++++||++||++|+.+.|.++++.+++.+++.|+.+++ +.+.+++++|
T Consensus 27 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 106 (148)
T 2b5x_A 27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF 106 (148)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHh
Confidence 3568999999999999999999999999999986799999995 4456899999
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+++++ ++|+++.++.|..+.+++.++|++++
T Consensus 107 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 107 ENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp CCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999998763
No 203
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=99.50 E-value=8.4e-13 Score=138.60 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=101.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--CC---CCC--cceee--ccCccccCCC-----------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--AG---GVP--GGQLM--TTTEVENFPG----------------- 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--~~---~~~--gg~~~--~~~~~~~~~~----------------- 147 (540)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+ |.+ ++... .......+.+
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~ 107 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILN 107 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhh
Confidence 4899999999999999999999999999999863 11 111 00000 0000000000
Q ss_pred ---CC------CCCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCCCCCC
Q 009224 148 ---FP------DGITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 148 ---~~------~~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~~~ip 215 (540)
-+ .......+...+.+.+++ .|++++.++|+.+..+++.+ .|.. ++..+.+|.||+|||+.+..+.++
T Consensus 108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~ 187 (651)
T 3ces_A 108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHI 187 (651)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEEC
T ss_pred cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCcccc
Confidence 00 012334567777788887 69999878999998766654 4544 567899999999999988777677
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~ 271 (540)
|...+ .+.+ +| |.++++++..|.+.|.+|+.+..
T Consensus 188 G~~~~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 188 GLDNY------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp C-----------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred CcccC------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 75431 1222 56 78999999999999999988753
No 204
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.50 E-value=2.4e-13 Score=121.76 Aligned_cols=112 Identities=29% Similarity=0.537 Sum_probs=91.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
++||+|||||++|+++|..|++.|.+|+|+|+.+. .+........+|++|....+.++.+.+.+.+++.|++++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~ 74 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS------KVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVR 74 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC------TTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC------cccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 37999999999999999999999999999998652 122222334556666667788999999999999999999
Q ss_pred EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 174 QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
.++|+.++.+++.+.+..+...+++|.||+|+|..|..
T Consensus 75 ~~~v~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~~~~ 112 (180)
T 2ywl_A 75 PGVVKGVRDMGGVFEVETEEGVEKAERLLLCTHKDPTL 112 (180)
T ss_dssp ECCCCEEEECSSSEEEECSSCEEEEEEEEECCTTCCHH
T ss_pred eCEEEEEEEcCCEEEEEECCCEEEECEEEECCCCCCCc
Confidence 98999998877778777644489999999999998743
No 205
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.49 E-value=4.7e-14 Score=112.67 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=70.9
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHH
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYRE 534 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 534 (540)
+.++.||++||++|+.+++.+++++++++ +.|..+|++++++++++|+++ +|++++|.+|+.+ ..|..+.++|++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~~L~~ 104 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDSDVIGA 104 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCCHHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE--EecCCCHHHHHH
Confidence 67899999999999999999999999985 889999999999999999997 9999999999876 358888899998
Q ss_pred HHH
Q 009224 535 FIE 537 (540)
Q Consensus 535 ~i~ 537 (540)
+|+
T Consensus 105 ~L~ 107 (107)
T 2fgx_A 105 YLS 107 (107)
T ss_dssp HHC
T ss_pred HhC
Confidence 873
No 206
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=99.49 E-value=1.6e-13 Score=128.87 Aligned_cols=90 Identities=18% Similarity=0.325 Sum_probs=78.6
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+....++++++.||++||++|+.+.|.+++++.++. +++.+..+|++++++++++|+|+++||+++ +|+.+
T Consensus 131 ~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~- 207 (243)
T 2hls_A 131 EALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV- 207 (243)
T ss_dssp HHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE-
T ss_pred HHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE-
Confidence 33333446678999999999999999999999999982 479999999999999999999999999888 88764
Q ss_pred EeeCCCCHHHHHHHHHhh
Q 009224 522 TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~ 539 (540)
+.|..+.++|.++|++.
T Consensus 208 -~~G~~~~~~l~~~l~~~ 224 (243)
T 2hls_A 208 -FVGVPYEEDFLDYVKSA 224 (243)
T ss_dssp -EESCCCHHHHHHHHHHH
T ss_pred -EeCCCCHHHHHHHHHHH
Confidence 88999999999999875
No 207
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.49 E-value=1.7e-13 Score=116.39 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=80.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC----------------------CHHHHHHcCCCccc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE----------------------DPEIAEAAGIMGTP 509 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------~~~~~~~~~i~~~P 509 (540)
.+++++++||++||++|+.+.|.++++.+++. ++.|+.|+++. +.+++++|++.++|
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 101 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP 101 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCC
Confidence 46899999999999999999999999999998 89999999987 67899999999999
Q ss_pred EEEEE-eCCeEEEEee---CCCCHHHHHHHHHhhC
Q 009224 510 CVQFF-KNKEMIRTVP---GVKMKKEYREFIEANK 540 (540)
Q Consensus 510 t~~~~-~~g~~~~~~~---g~~~~~~~~~~i~~~l 540 (540)
+++++ ++|+++ ++. |..+.+++.++|++++
T Consensus 102 ~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 99999 789998 999 9999999999999865
No 208
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=99.49 E-value=2.1e-14 Score=116.08 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=65.1
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc------CCHHHHHHcCCCcccEEEEEeCCeEEEEe
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------EDPEIAEAAGIMGTPCVQFFKNKEMIRTV 523 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 523 (540)
...+++.++.||++||++|+.+.|.|+++++++. .+|++ ++++++++|+|+++||+++ +|+. +
T Consensus 9 ~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~ 77 (106)
T 3kp8_A 9 AHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---Y 77 (106)
T ss_dssp HHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---E
T ss_pred HhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---e
Confidence 3345667899999999999999999999987774 45555 6789999999999999777 8873 8
Q ss_pred eCCCCHHHHHHHHH
Q 009224 524 PGVKMKKEYREFIE 537 (540)
Q Consensus 524 ~g~~~~~~~~~~i~ 537 (540)
.|..+.++|.+++.
T Consensus 78 ~G~~~~~~l~~~~~ 91 (106)
T 3kp8_A 78 TGVRSLEALAVASG 91 (106)
T ss_dssp ESCCCHHHHHHHHT
T ss_pred cCCCCHHHHHHHhC
Confidence 89999999999875
No 209
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=99.49 E-value=5.2e-14 Score=123.43 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=72.3
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcC---CCcccEEEEEeC-CeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAG---IMGTPCVQFFKN-KEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~---i~~~Pt~~~~~~-g~~~~ 521 (540)
..+....++++++.||++|||+|+.+.|.+++++++++ ++.|+.+|.+++++++++|. +.++||+++|++ |+++.
T Consensus 47 ~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~ 125 (167)
T 1z6n_A 47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLG 125 (167)
T ss_dssp HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEE
T ss_pred HHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEE
Confidence 33333357899999999999999999999999999886 69999999999999999997 999999999977 58777
Q ss_pred EeeCCCCHHHHHHHHH
Q 009224 522 TVPGVKMKKEYREFIE 537 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~ 537 (540)
++ |..+. .+.+.++
T Consensus 126 ~~-g~~p~-~~~~~i~ 139 (167)
T 1z6n_A 126 RF-VERPQ-AVLDGGP 139 (167)
T ss_dssp EE-ESSCH-HHHHHCH
T ss_pred EE-cCCCH-HHHHhHH
Confidence 77 44443 3444444
No 210
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.49 E-value=1.8e-14 Score=123.76 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=76.7
Q ss_pred cceeeeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHH--HhCCCeEEEEEECc-CCHHHHHHcCCCc
Q 009224 431 GFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVID--EFDENVHFVEIDIE-EDPEIAEAAGIMG 507 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~--~~~~~~~~~~vd~~-~~~~~~~~~~i~~ 507 (540)
.|.-...|..+-++..+.....+++++|+||++||++|+.+.|.+.+..+ ++. +..|+.||++ ++.+++.++++.+
T Consensus 22 ~~~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~-~~~fv~V~vD~e~~~~~~~~~v~~ 100 (151)
T 3ph9_A 22 GWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-QNKFIMLNLMHETTDKNLSPDGQY 100 (151)
T ss_dssp TSCTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH-HHTCEEEEESSCCSCGGGCTTCCC
T ss_pred cccCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh-hcCeEEEEecCCchhhHhhcCCCC
Confidence 44444555555555556667778999999999999999999999976422 221 1336666665 3456788899999
Q ss_pred ccEEEEEe-CCeEEEEeeCC-------CCHHHHHHHHH
Q 009224 508 TPCVQFFK-NKEMIRTVPGV-------KMKKEYREFIE 537 (540)
Q Consensus 508 ~Pt~~~~~-~g~~~~~~~g~-------~~~~~~~~~i~ 537 (540)
+||++||+ +|+++.+..|. ...+++.++|+
T Consensus 101 ~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~ 138 (151)
T 3ph9_A 101 VPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIE 138 (151)
T ss_dssp SSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHH
T ss_pred CCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHH
Confidence 99999997 99999999998 44444555444
No 211
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=99.48 E-value=9.9e-14 Score=129.44 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.++....+..++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|+++||+++ +|+ +.
T Consensus 125 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~ 200 (229)
T 2ywm_A 125 EKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VA 200 (229)
T ss_dssp HHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EE
Confidence 445565554344445889999999999999999999999994 79999999999999999999999999988 888 67
Q ss_pred EeeCCCCHHHHHHHHHhh
Q 009224 522 TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~ 539 (540)
++.|..+.++|.++|++.
T Consensus 201 ~~~G~~~~~~l~~~l~~~ 218 (229)
T 2ywm_A 201 EFVGAQPENAFLGYIMAV 218 (229)
T ss_dssp EEESCCCHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHHHHHH
Confidence 799999999999999875
No 212
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=99.48 E-value=5.5e-14 Score=108.51 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=65.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i 536 (540)
++.||++||++|+.++|.++++..++ +.++|++++++++++|+++ +|++++ ++|+.+. |..+.++|.++|
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l 72 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL 72 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence 68899999999999999999875443 6899999999999999998 999988 9998874 888999999999
Q ss_pred HhhC
Q 009224 537 EANK 540 (540)
Q Consensus 537 ~~~l 540 (540)
++++
T Consensus 73 ~~~~ 76 (87)
T 1ttz_A 73 DAAP 76 (87)
T ss_dssp HTCC
T ss_pred HHHH
Confidence 8754
No 213
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=99.48 E-value=6e-14 Score=140.45 Aligned_cols=97 Identities=20% Similarity=0.468 Sum_probs=86.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK- 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g- 517 (540)
+..+|.+.+...+++++++||++||++|+.+.|.++++++++.+ ++.|+.+|++.+. +++|+|.++||+++|++|
T Consensus 255 ~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~ 332 (361)
T 3uem_A 255 VGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASA 332 (361)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSS
T ss_pred ecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCC
Confidence 35567888888899999999999999999999999999999975 4999999999887 789999999999999655
Q ss_pred -eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 -EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 -~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+...++.|.++.+.|.+||++.
T Consensus 333 ~~~~~~~~G~~~~~~l~~~l~~~ 355 (361)
T 3uem_A 333 DRTVIDYNGERTLDGFKKFLESG 355 (361)
T ss_dssp SCCCEECCSCSSHHHHHHHHTTT
T ss_pred CcceeEecCCCCHHHHHHHHHhc
Confidence 6678999999999999999875
No 214
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.47 E-value=5.8e-15 Score=129.92 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH-HHHHcCC--CcccEEEEE-eCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE-IAEAAGI--MGTPCVQFF-KNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i--~~~Pt~~~~-~~g 517 (540)
+..+.. ....+++++|+||++||++|+.+.|.|+++.+.+..++.|+.||++++++ ++.+|++ .++||+++| ++|
T Consensus 36 ~~~~~~-~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G 114 (164)
T 1sen_A 36 EDGKKE-AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG 114 (164)
T ss_dssp HHHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS
T ss_pred HHHHHH-HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCC
Confidence 344444 44567899999999999999999999999877665456788888888776 7888888 669999999 899
Q ss_pred eEEEEeeCC----------CCHHHHHHHHHhh
Q 009224 518 EMIRTVPGV----------KMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~----------~~~~~~~~~i~~~ 539 (540)
+++.++.|. .+.++|.++|+++
T Consensus 115 ~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 115 KVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp CBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 999888885 7888999988875
No 215
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.47 E-value=9.9e-14 Score=143.81 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECc--CCHHHHHHcCCCcccEEEEEe-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFK- 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~- 515 (540)
..+|.+.+.+.+++++|+||++||++|+.+.|.++++++++.+ .+.|+.||++ ++++++++|+|.++||+++|+
T Consensus 19 ~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~ 98 (519)
T 3t58_A 19 ADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQA 98 (519)
T ss_dssp TTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECT
T ss_pred hHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcC
Confidence 5567888888889999999999999999999999999999976 7999999995 589999999999999999997
Q ss_pred ---CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 ---NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ---~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+....|..+.++|.++|++.+
T Consensus 99 g~~~G~~~~~~~g~~~~~~L~~~l~~~l 126 (519)
T 3t58_A 99 FTKNGSGATLPGAGANVQTLRMRLIDAL 126 (519)
T ss_dssp TCCSCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred cccCCCceeEecCCCCHHHHHHHHHHHH
Confidence 5666677788899999999998753
No 216
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=99.46 E-value=3.6e-13 Score=115.66 Aligned_cols=86 Identities=17% Similarity=0.354 Sum_probs=79.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------------CHHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------------DPEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------------~~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++.+++. .++.|+.|+++. +.+++++|++
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 46899999999999999999999999999997 579999999964 6689999999
Q ss_pred CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 506 MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
.++|+++++ ++|+++.++.|..+.++|.++|+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 999999999 89999999999999999999874
No 217
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=99.46 E-value=4.6e-13 Score=113.54 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=79.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.+.++++.+++. ++.|+.|+++. +.+++++|++.++
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 102 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ 102 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence 46799999999999999999999999999998 89999999854 5678999999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++++ ++|+++ ++.|..+.+++.++|++++
T Consensus 103 P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 103 PAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp SEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred ceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence 999999 689988 9999999999999999875
No 218
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=99.46 E-value=1.1e-13 Score=144.06 Aligned_cols=99 Identities=12% Similarity=0.369 Sum_probs=89.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
...+|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+ +++++|+|.++||+++|++|.
T Consensus 358 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~ 436 (481)
T 3f8u_A 358 VAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANK 436 (481)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTC
T ss_pred cccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCC
Confidence 35567888888899999999999999999999999999999975 699999999998 888999999999999998886
Q ss_pred E--EEEeeCCCCHHHHHHHHHhhC
Q 009224 519 M--IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~--~~~~~g~~~~~~~~~~i~~~l 540 (540)
. ..++.|..+.++|.+||++++
T Consensus 437 ~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 437 KLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp TTSCEECCSCCSHHHHHHHHHHHC
T ss_pred eEeeeEeCCCCCHHHHHHHHHHhc
Confidence 5 688999999999999998763
No 219
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=99.45 E-value=5.4e-13 Score=115.61 Aligned_cols=89 Identities=15% Similarity=0.369 Sum_probs=80.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC----------------------HHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED----------------------PEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~----------------------~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++.. .++++.|++.++
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 104 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 104 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence 468999999999999999999999999999975 699999998763 478999999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++++ ++|+++.++.|..+.++|.++|++++
T Consensus 105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll 137 (151)
T 2f9s_A 105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137 (151)
T ss_dssp CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHS
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 999998 89999999999999999999998864
No 220
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.44 E-value=1.4e-13 Score=152.04 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=84.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+ +.+++++|+||++||++|+.+.|.|+++++++.+.+.|+.||+++++++|++|+|+++||+++|++|+.+
T Consensus 122 ~~~~f~~~i-~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 200 (780)
T 3apo_A 122 ERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAA 200 (780)
T ss_dssp CHHHHHHHH-TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSCC
T ss_pred chHhHHhhh-cCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcEe
Confidence 467788877 6788999999999999999999999999999987899999999999999999999999999999999988
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.+.|.+|+.+.+
T Consensus 201 ~~~~G~~~~~~l~~~l~~~~ 220 (780)
T 3apo_A 201 VKYNGDRSKESLVAFAMQHV 220 (780)
T ss_dssp EECCSCSCHHHHHHHHHTTS
T ss_pred eEecCCCCHHHHHHHHHHhc
Confidence 99999999999999998764
No 221
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=99.44 E-value=4.7e-13 Score=124.51 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHh---CCCeEEEEEECcC-----CHHHHHHcCCC--ccc
Q 009224 442 QYALRKLYHESPRLICVLYT--SPTCGPCRTLKPILGKVIDEF---DENVHFVEIDIEE-----DPEIAEAAGIM--GTP 509 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~---~~~~~~~~vd~~~-----~~~~~~~~~i~--~~P 509 (540)
..+|.+ +.+.+++++|.|| +|||+ +.|.|+++++++ .+++.|++|||++ ++++|++|+|+ ++|
T Consensus 23 ~~nF~~-vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~P 97 (248)
T 2c0g_A 23 ELSFEK-TVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFP 97 (248)
T ss_dssp TTTHHH-HHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCC
T ss_pred HHHHHH-HHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCC
Confidence 456777 4467789999999 99998 999999999998 4579999999998 89999999999 999
Q ss_pred EEEEEeCCeE--EEEe--eCCCCHHHHHHHHHhh
Q 009224 510 CVQFFKNKEM--IRTV--PGVKMKKEYREFIEAN 539 (540)
Q Consensus 510 t~~~~~~g~~--~~~~--~g~~~~~~~~~~i~~~ 539 (540)
|+++|+ |+. ...+ .|.++.+.|.+||++.
T Consensus 98 Tl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 98 SIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp EEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred eEEEEe-CCcCcceeecccCCCCHHHHHHHHHHh
Confidence 999999 873 5677 8999999999999875
No 222
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=99.44 E-value=3.4e-12 Score=133.52 Aligned_cols=156 Identities=24% Similarity=0.256 Sum_probs=105.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--CC---CCC--cc----eeec-----cCc---------c--c--c
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--AG---GVP--GG----QLMT-----TTE---------V--E--N 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--~~---~~~--gg----~~~~-----~~~---------~--~--~ 144 (540)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+ |.+ || .+.. ... . . +
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~ 106 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN 106 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence 4899999999999999999999999999999863 11 111 00 0000 000 0 0 0
Q ss_pred ---CCCCC---CCCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCCCCCC
Q 009224 145 ---FPGFP---DGITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 145 ---~~~~~---~~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~~~ip 215 (540)
-+... .......+...+.+.+++ .|++++..+|+.+..+++.+ .|.. ++..+.+|.||+|||..+..+.++
T Consensus 107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~~ 186 (637)
T 2zxi_A 107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYI 186 (637)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEEEE
T ss_pred cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCceec
Confidence 00000 012345677778888887 59999877999998776654 3444 567899999999999988777666
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~ 271 (540)
|...+. +.+ + |+.++++++..|.+.|.++..+.+
T Consensus 187 G~~~~~------------------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 187 GDKMIP------------------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp TTEEEE------------------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred cceecC------------------CCC---C-CchhHHHHHHHHHhcCCceEEecC
Confidence 654311 111 2 356789999999999988776654
No 223
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=99.44 E-value=1.4e-13 Score=120.72 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEECcCCHHHHHHc--------CCCcccE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPI-L--GKVIDEFDENVHFVEIDIEEDPEIAEAA--------GIMGTPC 510 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt 510 (540)
++.| +.....+++++|.||++||++|+.|.+. | .++++.+.+++.+++||.++.+++.+.| ++.++|+
T Consensus 29 ~ea~-~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt 107 (173)
T 3ira_A 29 EEAF-EKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPL 107 (173)
T ss_dssp HHHH-HHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSE
T ss_pred HHHH-HHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcc
Confidence 3444 4456678899999999999999999993 3 5677777667899999999999999988 9999999
Q ss_pred EEEEe-CCeEEEE
Q 009224 511 VQFFK-NKEMIRT 522 (540)
Q Consensus 511 ~~~~~-~g~~~~~ 522 (540)
++||+ +|+++..
T Consensus 108 ~v~l~~dG~~v~~ 120 (173)
T 3ira_A 108 NIIMTPGKKPFFA 120 (173)
T ss_dssp EEEECTTSCEEEE
T ss_pred eeeECCCCCceee
Confidence 99994 8988875
No 224
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=99.43 E-value=7.7e-13 Score=116.41 Aligned_cols=89 Identities=19% Similarity=0.357 Sum_probs=80.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHc---------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAA--------------------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------------------------- 503 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++.+++..++|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 468999999999999999999999999999976 4999999999888777766
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+++++ ++|+++.++.|..+.+++.++|+++|
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 150 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMAL 150 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 89999999888 89999999999999999999998763
No 225
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=99.43 E-value=3.8e-13 Score=125.41 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=87.1
Q ss_pred CcHHHHHHHH-HhCCCeEEEEEE-----CCCChhhhhhhHHHHHHHHHh--CCCeEEEEEECcCCHHHHHHcCCCcccEE
Q 009224 440 KGQYALRKLY-HESPRLICVLYT-----SPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCV 511 (540)
Q Consensus 440 ~~~~~~~~~~-~~~~~~~~v~f~-----~~~C~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 511 (540)
+..+++.+.+ .+..+++++.|| ++||++|+.+.|.++++++++ .+++.|+.+|+++++++|++|+|+++||+
T Consensus 6 ~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl 85 (229)
T 2ywm_A 6 DVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTI 85 (229)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEE
Confidence 3456677777 466777777776 889999999999999998888 67899999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 512 QFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 512 ~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++|++|+...++.|..+.+++.+|+.+.
T Consensus 86 ~~~~~~~~~~~~~G~~~~~~l~~~~~~~ 113 (229)
T 2ywm_A 86 VIEGDKDYGIRYIGLPAGLEFTTLINGI 113 (229)
T ss_dssp EEESSSCCCEEEESCCCTTHHHHHHHHH
T ss_pred EEECCCcccceecCCccHHHHHHHHHHH
Confidence 9999888888999999999999998764
No 226
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=99.42 E-value=7.8e-13 Score=114.63 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=78.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC------------------------CHHHHHHcC--
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE------------------------DPEIAEAAG-- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~------------------------~~~~~~~~~-- 504 (540)
.+++++++||++||++|+.+.|.++++.+++. .++.|+.|+++. ..++++.|+
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 46899999999999999999999999999995 479999999873 345778888
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++|+++++ ++|+++.++.|..+.++|.++|+++
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 138 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLA 138 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 9999988888 8899999999999999999999875
No 227
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=99.42 E-value=3.9e-13 Score=125.11 Aligned_cols=98 Identities=13% Similarity=0.321 Sum_probs=83.5
Q ss_pred cHHHHHHHH-Hh-CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLY-HE-SPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~-~~-~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~ 515 (540)
...++.+.+ .+ .+.+++++||++ ||++|+.+.|.++++++. .+++.|+.+|+++ +++++++|+|+++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~ 86 (226)
T 1a8l_A 8 DKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ 86 (226)
T ss_dssp HHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc
Confidence 455666666 33 345677999999 999999999999999865 4579999999999 99999999999999999999
Q ss_pred CCeEE-EEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMI-RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~-~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.. .++.|..+.+++.+|++++
T Consensus 87 ~g~~~~~~~~G~~~~~~l~~~l~~~ 111 (226)
T 1a8l_A 87 DGKDFGVRYFGLPAGHEFAAFLEDI 111 (226)
T ss_dssp TTBCCSEEEESCCCTTHHHHHHHHH
T ss_pred CCceeeEEEeccCcHHHHHHHHHHH
Confidence 99775 7889998888899888764
No 228
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=99.42 E-value=1.5e-12 Score=136.64 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=104.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--CCC---CCc--ce----eec-----cCc-----------c---
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--AGG---VPG--GQ----LMT-----TTE-----------V--- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--~~~---~~g--g~----~~~-----~~~-----------~--- 142 (540)
..+||+|||||+||++||..|++.|.+|+|+|+.. .+. .+. +. +.. ... +
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML 99 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence 35899999999999999999999999999999873 211 111 00 000 000 0
Q ss_pred c--cCCCCC---CCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCCCCCCCCC
Q 009224 143 E--NFPGFP---DGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 143 ~--~~~~~~---~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~~~~~~~i 214 (540)
. .-+... .......+...+.+.+++. |++++.++|+.+..+++.+. |.. ++..+.+|.||+|||+.+..+.+
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i~ 179 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIH 179 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEEE
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccce
Confidence 0 001100 0123446777788888774 99998889999887777654 544 56789999999999998765443
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEe
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~ 271 (540)
+|...+ . +.++ + |+.++++++..|.+.|.+|..+..
T Consensus 180 ~G~~~~--------~----------~g~~--v-G~~~a~~la~~L~~~G~kv~~l~t 215 (641)
T 3cp8_A 180 IGMDHF--------P----------GGRS--T-AEPPVEGLTESLASLGFSFGRLKT 215 (641)
T ss_dssp ETTEEE--------E----------CSSS--T-TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred eeeeee--------c----------cccc--c-CCchhhhhHHHHHhCCceEEeecC
Confidence 333221 0 0111 1 467888999999999999876644
No 229
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=99.41 E-value=1.1e-12 Score=121.55 Aligned_cols=94 Identities=11% Similarity=0.238 Sum_probs=82.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEEC--CCChhhhhhhHHHHHHHHHhC--CCeEEEEEEC-----cCCHHHHHHcCCC--ccc
Q 009224 441 GQYALRKLYHESPRLICVLYTS--PTCGPCRTLKPILGKVIDEFD--ENVHFVEIDI-----EEDPEIAEAAGIM--GTP 509 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~--~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~-----~~~~~~~~~~~i~--~~P 509 (540)
+..+|.+++ ..+++++|.||+ |||+ +.|.|+++++.+. +++.|+.||+ ++++++|++|+|+ ++|
T Consensus 11 t~~nF~~~i-~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~P 85 (240)
T 2qc7_A 11 DTVTFYKVI-PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYP 85 (240)
T ss_dssp CTTHHHHHG-GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCS
T ss_pred CHHHHHHHH-cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCC
Confidence 356778755 567899999999 9999 9999999999985 4799999995 4589999999999 999
Q ss_pred EEEEEeCCe--EEEEeeCCCCHHHHHHHHHhh
Q 009224 510 CVQFFKNKE--MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 510 t~~~~~~g~--~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++|++|+ ...++.|.++.+.|.+||++.
T Consensus 86 Tl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 86 VFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp EEEEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred EEEEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence 999999998 467899999999999999875
No 230
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=99.40 E-value=1.5e-12 Score=110.40 Aligned_cols=88 Identities=15% Similarity=0.294 Sum_probs=79.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC----------------------------cCCHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI----------------------------EEDPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~----------------------------~~~~~~~~~~ 503 (540)
.+++++++||++||++|+.+.+.++++.+++++++.++.++. +.+.+++++|
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY 100 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence 468999999999999999999999999999887899999853 3455789999
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++|+++++ ++|+++.++.|..+.+++.++|+++
T Consensus 101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 99999999999 8999999999999999999999875
No 231
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=99.40 E-value=1.6e-12 Score=113.48 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=78.1
Q ss_pred CCCeEEEEEECCCChhhhhh-hHHHHHHHHHhC-CCeEEEEEECc----------------------------CCH----
Q 009224 452 SPRLICVLYTSPTCGPCRTL-KPILGKVIDEFD-ENVHFVEIDIE----------------------------EDP---- 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~-~~~~~~~vd~~----------------------------~~~---- 497 (540)
.+++++++||++||++|+.. .|.++++.+++. .++.|+.|+++ ...
T Consensus 27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM 106 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence 46899999999999999996 999999999997 46999999863 222
Q ss_pred -HHHHHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 498 -EIAEAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 498 -~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++.|++.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 58999999999998888 78999999999999999999998763
No 232
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=99.40 E-value=1.9e-12 Score=113.31 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCCeEEEEEECCCChhhhh-hhHHHHHHHHHhCC-CeEEEEEEC----------------------------cCCHH---
Q 009224 452 SPRLICVLYTSPTCGPCRT-LKPILGKVIDEFDE-NVHFVEIDI----------------------------EEDPE--- 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~-~~~~~~~~~~~~~~-~~~~~~vd~----------------------------~~~~~--- 498 (540)
.+++++++||++||++|+. +.|.++++.+++.+ ++.|+.|++ +...+
T Consensus 29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (160)
T 3lor_A 29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR 108 (160)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence 4789999999999999999 59999999999975 499999986 23334
Q ss_pred ---HHHHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 499 ---IAEAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 499 ---~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++|++.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 154 (160)
T 3lor_A 109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLL 154 (160)
T ss_dssp SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHH
T ss_pred hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 8999999999999999 68999999999999999999998764
No 233
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=99.39 E-value=1.1e-12 Score=113.62 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH-----------------------HHHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP-----------------------EIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~-----------------------~~~~~~~i~~ 507 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+++.+. ++++.|++.+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 108 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING 108 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence 468999999999999999999999999999975 5999999998775 7889999999
Q ss_pred ccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 508 TPCVQFFK-NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+++++. +|+++.+..|..+.+++.++|+++
T Consensus 109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNEL 141 (152)
T ss_dssp SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHH
Confidence 99999995 899999999998999999999875
No 234
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=99.38 E-value=2.9e-12 Score=111.01 Aligned_cols=89 Identities=17% Similarity=0.404 Sum_probs=78.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH----------------------HHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP----------------------EIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~----------------------~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+++.++ ++++.|++.++
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 106 (152)
T 3gl3_A 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM 106 (152)
T ss_dssp TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence 468999999999999999999999999999975 4999999998765 67888999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCC--HHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKM--KKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~--~~~~~~~i~~~l 540 (540)
|+++++ ++|+++.++.|..+ .+++.++|++.+
T Consensus 107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141 (152)
T ss_dssp SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence 998888 89999999999754 478999998764
No 235
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=99.38 E-value=1.4e-12 Score=113.36 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=78.2
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------cCCHHHHHHcCCC
Q 009224 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI---------------------------EEDPEIAEAAGIM 506 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~~~~i~ 506 (540)
++++++||++||++|+.+.|.++++.+++ ++.|+.|++ +.+.+++++|++.
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL 108 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence 89999999999999999999999999999 688999999 3567889999999
Q ss_pred cccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 507 GTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 507 ~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+++++ ++|+++.++.|..+.+++.++|++++
T Consensus 109 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 143 (154)
T 3ia1_A 109 GQPWTFVVDREGKVVALFAGRAGREALLDALLLAG 143 (154)
T ss_dssp SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence 99998888 89999999999999999999999863
No 236
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=99.38 E-value=4.9e-13 Score=117.61 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=77.1
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEE----------------------------CcCCHHHHH
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEID----------------------------IEEDPEIAE 501 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd----------------------------~~~~~~~~~ 501 (540)
..+++++++||++||++|+.+.|.++++++++. .++.|+.|+ .+.+.++++
T Consensus 36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 115 (164)
T 2h30_A 36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ 115 (164)
T ss_dssp CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence 346899999999999999999999999999873 346665554 344568899
Q ss_pred HcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 502 AAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 502 ~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+|.++|+++++ ++|+++.++.|..+.++|.++|++++
T Consensus 116 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~ 155 (164)
T 2h30_A 116 NLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN 155 (164)
T ss_dssp HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred HcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999 89999999999999999999998764
No 237
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=99.37 E-value=2.8e-12 Score=110.44 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHh-CC-CeEEEEEECcCC-------------------------HHHHHHcC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEF-DE-NVHFVEIDIEED-------------------------PEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~-~~~~~~vd~~~~-------------------------~~~~~~~~ 504 (540)
.+++++++||++||++|+.+.|.+.++.+++ .+ ++.|+.|+++.. .+++++|+
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 4689999999999999999999999999999 65 499999999874 37899999
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++|+++++ ++|+++.+.. +.+++.++|+++|
T Consensus 112 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll 145 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKILARDI---QGEALTGKLKELL 145 (148)
T ss_dssp CCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC
T ss_pred CCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHH
Confidence 9999999999 8899888765 7888999998765
No 238
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=99.37 E-value=1.1e-12 Score=113.01 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=77.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHH-------------------------HHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPE-------------------------IAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-------------------------~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++.+++ +++.|++
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 468999999999999999999999999999976 49999999998777 9999999
Q ss_pred CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 506 MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.++|+++++ ++|+++.+..|..+.+++.+.+.+.
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~ 144 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS 144 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence 999999999 8999999998887776666666543
No 239
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=99.36 E-value=2.7e-12 Score=111.33 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++. +.++++.|++
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence 468999999999999999999999999999976 49999999987 4678899999
Q ss_pred CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 506 MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.++|+++++ ++|+++.+.. +.+++.++|+++
T Consensus 108 ~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l 139 (152)
T 2lrn_A 108 VGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKF 139 (152)
T ss_dssp CSSCEEEEECTTSEEEEECC---CTTHHHHHHHHH
T ss_pred CcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHH
Confidence 999999999 8899888863 445677777654
No 240
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=99.36 E-value=4.7e-14 Score=142.21 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=67.6
Q ss_pred HHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 445 LRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--------NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 445 ~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--------~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
|.+.+. ..+++++|+||++||++|+.+.|.|+++++++.. ++.|+.||++++++++++|+|.++||+++|+
T Consensus 33 F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTlilf~ 112 (470)
T 3qcp_A 33 FSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFY 112 (470)
T ss_dssp GGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEEEEEE
T ss_pred HHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeEEEEE
Confidence 444443 3457999999999999999999999999999962 4999999999999999999999999999996
Q ss_pred CCe--EEEEeeCC
Q 009224 516 NKE--MIRTVPGV 526 (540)
Q Consensus 516 ~g~--~~~~~~g~ 526 (540)
+|+ +..++.|.
T Consensus 113 ~gg~~~~~~y~G~ 125 (470)
T 3qcp_A 113 PRDSCRSNEECGT 125 (470)
T ss_dssp ESSCCCTTSCCCC
T ss_pred CCCceEEEEeeCC
Confidence 543 23344554
No 241
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=99.36 E-value=6e-13 Score=139.28 Aligned_cols=97 Identities=21% Similarity=0.400 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+.+.+++++|+||++||++|+.+.|.++++++++. .++.++.+|++.+... + |+|.++||+++|++|+
T Consensus 365 ~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~ 442 (504)
T 2b5e_A 365 GKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGK 442 (504)
T ss_dssp TTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTT
T ss_pred cccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCCc
Confidence 566788888889999999999999999999999999999885 3799999999988654 3 9999999999999997
Q ss_pred E--EEEeeCCCCHHHHHHHHHhhC
Q 009224 519 M--IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~--~~~~~g~~~~~~~~~~i~~~l 540 (540)
. ..++.|..+.++|.+||++++
T Consensus 443 ~~~~~~~~G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 443 KSESVVYQGSRSLDSLFDFIKENG 466 (504)
T ss_dssp SCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred eecceEecCCCCHHHHHHHHHhcC
Confidence 6 678899999999999998763
No 242
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=2e-12 Score=112.24 Aligned_cols=89 Identities=17% Similarity=0.304 Sum_probs=79.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEC-----------------------cCCHHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDI-----------------------EEDPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~-----------------------~~~~~~~~~~~i~~ 507 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+. +.+.++++.|++.+
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 578999999999999999999999999999975 588887763 45668999999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++++ ++|+++.++.|..+.+++.++|+++|
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 140 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAW 140 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHH
T ss_pred cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999 88999999999999999999998763
No 243
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.35 E-value=1.2e-12 Score=144.34 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=91.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+...++++++.||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 663 ~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 742 (780)
T 3apo_A 663 TPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAK 742 (780)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTT
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCcc
Confidence 46778777778889999999999999999999999999999987899999999999999999999999999999999887
Q ss_pred EEeeC----CCCHHHHHHHHHhhC
Q 009224 521 RTVPG----VKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g----~~~~~~~~~~i~~~l 540 (540)
.++.| ..+.++|.++|++++
T Consensus 743 ~~~~G~~~g~~~~~~l~~~l~~~l 766 (780)
T 3apo_A 743 KSIWEEQINSRDAKTIAALIYGKL 766 (780)
T ss_dssp TEEEEEEECCCCHHHHHHHHHHHT
T ss_pred ccccCcccCCcCHHHHHHHHHHHH
Confidence 77776 479999999998864
No 244
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=99.34 E-value=6.1e-12 Score=110.70 Aligned_cols=86 Identities=13% Similarity=0.374 Sum_probs=76.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc------------------CCH----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------------------EDP---------------- 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------------------~~~---------------- 497 (540)
.+++++++||++||++|+.+.|.++++.+++. ++.|+.|+++ +++
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI 114 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence 46899999999999999999999999999998 8999999998 443
Q ss_pred ------HHHHHcCCCcccEEEEE-eCCeEEEEeeCCC-CHHHHHHHHHhhC
Q 009224 498 ------EIAEAAGIMGTPCVQFF-KNKEMIRTVPGVK-MKKEYREFIEANK 540 (540)
Q Consensus 498 ------~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~-~~~~~~~~i~~~l 540 (540)
++++.|++.++|+++++ ++|+++. .|.. +.+++.++|++++
T Consensus 115 ~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 115 MVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred EEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 78899999999999999 7888877 7888 8999999998864
No 245
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=99.34 E-value=4e-12 Score=114.03 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=77.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-e------EEEEEECcC-CHHHHHHc--------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN-V------HFVEIDIEE-DPEIAEAA-------------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~------~~~~vd~~~-~~~~~~~~-------------------- 503 (540)
.+++++++||++||++|+.+.|.++++.+++.++ + .|+.|+++. +++..++|
T Consensus 58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 137 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137 (183)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence 4689999999999999999999999999998643 7 999999998 67766665
Q ss_pred -----CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 -----GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 -----~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+++++ ++|+++.++.|..+.++|.++|++++
T Consensus 138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180 (183)
T ss_dssp GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 68999976666 88999999999999999999998764
No 246
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=99.33 E-value=2.6e-12 Score=113.44 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=73.4
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE-----------------------CcCCHHHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID-----------------------IEEDPEIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd-----------------------~~~~~~~~~~~~i~~ 507 (540)
..+++++++||++||++|+.+.|.++++.++ ++.|+.|+ .+.+.+++++|+|.+
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 125 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 125 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc
Confidence 3578999999999999999999999999887 57777777 455668899999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+++++ ++|+++.++.|..+.+++.++|+++
T Consensus 126 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 158 (168)
T 2b1k_A 126 APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 158 (168)
T ss_dssp SSEEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred cCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 9965555 8999999999999999898888765
No 247
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.32 E-value=3.6e-12 Score=110.97 Aligned_cols=87 Identities=15% Similarity=0.287 Sum_probs=74.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----------------------CCHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----------------------EDPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.|.++++.++ +++.|+.|+++ .+.+++++|++.++
T Consensus 41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 118 (156)
T 1kng_A 41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV 118 (156)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence 368999999999999999999999999877 46888888864 34578899999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++++ ++|+++.++.|..+.+++.++|++++
T Consensus 119 P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l 151 (156)
T 1kng_A 119 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQM 151 (156)
T ss_dssp CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 976666 89999999999999999998887653
No 248
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=99.32 E-value=1.1e-11 Score=107.68 Aligned_cols=88 Identities=17% Similarity=0.357 Sum_probs=77.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC-----------------------HHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED-----------------------PEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-----------------------~~~~~~~~i~~ 507 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+++.+ .++++.|++.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 568999999999999999999999999999976 799999999876 34888999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCC--CHHHHHHHHHhh
Q 009224 508 TPCVQFF-KNKEMIRTVPGVK--MKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~~ 539 (540)
+|+++++ ++|+++.++.|.. +.+++.++|+++
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 141 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 141 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence 9977776 8899999999986 566899999875
No 249
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=99.29 E-value=2.2e-11 Score=106.28 Aligned_cols=87 Identities=13% Similarity=0.312 Sum_probs=76.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------CHHHHHHcCCCcccEE
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------DPEIAEAAGIMGTPCV 511 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------~~~~~~~~~i~~~Pt~ 511 (540)
.+++++++||++||++|+.+.+.++++.+++. .++.|+.|+++. +.+++++|++.++|++
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 119 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT 119 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence 46899999999999999999999999999997 579999999987 6789999999999997
Q ss_pred EEE-eCCeEEEEeeCCCC--HHHHHHHHHh
Q 009224 512 QFF-KNKEMIRTVPGVKM--KKEYREFIEA 538 (540)
Q Consensus 512 ~~~-~~g~~~~~~~g~~~--~~~~~~~i~~ 538 (540)
+++ ++|+++.++.|..+ .+++.+.+++
T Consensus 120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKS 149 (158)
T ss_dssp EEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred EEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence 777 89999999999854 5566666654
No 250
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=99.29 E-value=1.3e-11 Score=105.53 Aligned_cols=84 Identities=12% Similarity=0.250 Sum_probs=72.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHH---HHHHhC-CCeEEEEEECcCCHH------------------------HHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGK---VIDEFD-ENVHFVEIDIEEDPE------------------------IAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~-~~~~~~~vd~~~~~~------------------------~~~~~ 503 (540)
.+++++++||++||++|+.+.|.+++ +.+++. .++.++.|+.+.+.+ +++.|
T Consensus 30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 109 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY 109 (142)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence 35899999999999999999999999 999985 479999999987754 36678
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++.++|+++++ ++|+++.+..+ .++++++|++
T Consensus 110 ~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~e 142 (142)
T 3eur_A 110 DLRAIPTLYLLDKNKTVLLKDAT---LQKVEQYLAE 142 (142)
T ss_dssp CCTTCSEEEEECTTCBEEEEEEC---HHHHHHHHHC
T ss_pred CCCcCCeEEEECCCCcEEecCCC---HHHHHHHHhC
Confidence 99999999998 78998887654 6888888874
No 251
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=99.29 E-value=1.5e-11 Score=106.61 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHH-----------------------HHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPE-----------------------IAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-----------------------~~~~~~i~~ 507 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.|+.|+++...+ +++.|++.+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 113 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN 113 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence 367999999999999999999999999999975 49999999987764 888999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHH
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+|+++++ ++|+++.++.|..+.++.....
T Consensus 114 ~P~~~lid~~G~i~~~~~g~~~~e~~~~~~ 143 (152)
T 2lrt_A 114 LPSVFLVNRNNELSARGENIKDLDEAIKKL 143 (152)
T ss_dssp CSEEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred CceEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence 9999999 7899999999988876555443
No 252
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=99.28 E-value=1.2e-11 Score=110.10 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=73.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------cCCHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------EEDPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+...|.++++.++ ++.|+.|++ +.+.++++.|++.++
T Consensus 57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 133 (176)
T 3kh7_A 57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA 133 (176)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence 468999999999999999999999999887 588888885 345578889999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++++ ++|+++.++.|..+.+++.++|+++
T Consensus 134 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 165 (176)
T 3kh7_A 134 PETYLIDKQGIIRHKIVGVVDQKVWREQLAPL 165 (176)
T ss_dssp CEEEEECTTCBEEEEEESCCCHHHHHHHTHHH
T ss_pred CeEEEECCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 977777 8899999999999999888888765
No 253
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.27 E-value=3.6e-11 Score=121.93 Aligned_cols=115 Identities=25% Similarity=0.403 Sum_probs=84.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCccee--------eccC---ccc----cCCCC--------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQL--------MTTT---EVE----NFPGF-------- 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~--------~~~~---~~~----~~~~~-------- 148 (540)
...+||+|||||+||+++|..|+++|++|+|+|+.+. +|+.+ .... ... ..+.+
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~---~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~ 101 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA---PGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARY 101 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC---CCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhc
Confidence 3458999999999999999999999999999999876 33322 1100 000 00000
Q ss_pred --------------C----------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEE
Q 009224 149 --------------P----------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVF 203 (540)
Q Consensus 149 --------------~----------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvi 203 (540)
+ ......++.+.+.+.+++.|++++.+ +|+.+..+++.+.|..+...+++|+||+
T Consensus 102 ~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~VIl 181 (417)
T 3v76_A 102 RPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVV 181 (417)
T ss_dssp CHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEESEEEE
T ss_pred CHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEeeEEEE
Confidence 0 01234578888888899999999987 8999998888888888666899999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|||..+
T Consensus 182 AtG~~S 187 (417)
T 3v76_A 182 ASGGKS 187 (417)
T ss_dssp CCCCSS
T ss_pred CCCCcc
Confidence 999875
No 254
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=99.27 E-value=1.1e-11 Score=106.08 Aligned_cols=85 Identities=14% Similarity=0.389 Sum_probs=71.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHH---HHHHhCC-CeEEEEEECcCCHHH------------------------HHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGK---VIDEFDE-NVHFVEIDIEEDPEI------------------------AEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~~-~~~~~~vd~~~~~~~------------------------~~~~ 503 (540)
.+++++++||++||++|+.+.|.+.+ +.+++.+ ++.|+.|+++++++. ++.|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 46899999999999999999999988 8888853 599999999877654 3379
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++|+++++ ++|+++. +..+.+++.++|+++
T Consensus 106 ~v~~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 106 DIRATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQ 139 (142)
T ss_dssp CCCSSSEEEEECTTCBEEE---CSCCHHHHHHHHHC-
T ss_pred CCCCCCeEEEECCCCCEEe---cCCCHHHHHHHHHHH
Confidence 99999999999 7898766 457889999999875
No 255
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=3.6e-11 Score=103.92 Aligned_cols=85 Identities=12% Similarity=0.218 Sum_probs=74.7
Q ss_pred CCCeEEEEEECCCChh--hhhhhHHHHHHHHHh-CC-CeEEEEEECcCCH-------------------------HHHHH
Q 009224 452 SPRLICVLYTSPTCGP--CRTLKPILGKVIDEF-DE-NVHFVEIDIEEDP-------------------------EIAEA 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~--C~~~~~~~~~~~~~~-~~-~~~~~~vd~~~~~-------------------------~~~~~ 502 (540)
.+++++++||++||++ |+...|.++++.+++ .+ ++.|+.|+++.++ ++++.
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 111 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ 111 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence 4689999999999999 999999999999999 65 4999999998764 78899
Q ss_pred cCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 503 AGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 503 ~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|++.++|+++++ ++|+++.+.. +.+++.+.|+++
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l 146 (150)
T 3fw2_A 112 YSIYKIPANILLSSDGKILAKNL---RGEELKKKIENI 146 (150)
T ss_dssp TTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHH
T ss_pred cCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHH
Confidence 999999999999 8899888764 777788888765
No 256
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=99.25 E-value=1.9e-11 Score=114.59 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=87.3
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhC---CC--eEEEEEECcCCHHHHHHcCCCcc
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFD---EN--VHFVEIDIEEDPEIAEAAGIMGT 508 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~---~~--~~~~~vd~~~~~~~~~~~~i~~~ 508 (540)
+.+.+...+|.+++..-.+++++.||++| |++|+.+.+.++++++.++ ++ +.|+.+|++++++++++|+|+++
T Consensus 8 ~~~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~ 87 (243)
T 2hls_A 8 DLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERV 87 (243)
T ss_dssp CCCHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSS
T ss_pred hCCHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcC
Confidence 34455678888888888899999999999 9999999999999999863 22 99999999999999999999999
Q ss_pred cEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
||+++| +| ..++.|..+.+++.+|+.++
T Consensus 88 Pt~~i~-~g--~~~~~G~~~~~~l~~fv~~~ 115 (243)
T 2hls_A 88 PTVAFL-GG--EVRWTGIPAGEEIRALVEVI 115 (243)
T ss_dssp SEEEET-TT--TEEEESCCCTTHHHHHHHHH
T ss_pred CEEEEE-CC--ceeEcCCCcHHHHHHHHHHH
Confidence 999999 66 66788988888888887754
No 257
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=99.24 E-value=2.7e-11 Score=119.07 Aligned_cols=89 Identities=7% Similarity=0.055 Sum_probs=79.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
.+++++|+||++||++|+.+.|.++++++++.+ ++.|+.|++++ +.+++++|
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y 160 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY 160 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence 368999999999999999999999999999975 69999998753 35788999
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|.++|+++|+ ++|+++.++.|..+.+++.++|+++|
T Consensus 161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL 198 (352)
T 2hyx_A 161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198 (352)
T ss_dssp TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999998888 89999999999999999999998753
No 258
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=99.23 E-value=2.1e-11 Score=110.52 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=76.1
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-----------------------------CCHHHH
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-----------------------------EDPEIA 500 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-----------------------------~~~~~~ 500 (540)
..+.+++++||++||++|+...|.++++.+++.+ ++.|+.|+++ .+.+++
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA 123 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence 3344699999999999999999999999999975 5999999983 456789
Q ss_pred HHcCCCcccEEEEE-eCCeEEEE---------eeCCCCHHHHHHHHHhh
Q 009224 501 EAAGIMGTPCVQFF-KNKEMIRT---------VPGVKMKKEYREFIEAN 539 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~-~~g~~~~~---------~~g~~~~~~~~~~i~~~ 539 (540)
++|++.++|+++++ ++|+++.+ +.|..+.++|.+.|+++
T Consensus 124 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l 172 (196)
T 2ywi_A 124 KAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL 172 (196)
T ss_dssp HHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred HHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence 99999999999998 78999887 45777888899998875
No 259
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.22 E-value=7.3e-11 Score=105.97 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=76.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC-----HHHHHHcCCC-------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED-----PEIAEAAGIM------------------- 506 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~-----~~~~~~~~i~------------------- 506 (540)
.+++++++||++||++|+.+.|.++++.+++. .++.++.|+++.+ .++.+++++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 138 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 138 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence 46899999999999999999999999999997 5799999999865 4566777774
Q ss_pred ----cccEEEEE-eCCeEEEEeeCCCC--HHHHHHHHHhh
Q 009224 507 ----GTPCVQFF-KNKEMIRTVPGVKM--KKEYREFIEAN 539 (540)
Q Consensus 507 ----~~Pt~~~~-~~g~~~~~~~g~~~--~~~~~~~i~~~ 539 (540)
++|+++++ ++|+++.++.|..+ .+++.++|+++
T Consensus 139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 178 (186)
T 1jfu_A 139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 178 (186)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence 89999888 88999999999865 67899988875
No 260
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=99.22 E-value=3.7e-11 Score=108.18 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=73.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------------cCCHHHHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------------EEDPEIAEA 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------------~~~~~~~~~ 502 (540)
.+++++++||++||++|+...|.++++.+++.+++.|+.|++ +.+.++++.
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 111 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 111 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 468999999999999999999999999999986699999998 345678999
Q ss_pred cCCCcccEEEEE-eCCeEEEE--------eeCCCCHHHHHHHHHhh
Q 009224 503 AGIMGTPCVQFF-KNKEMIRT--------VPGVKMKKEYREFIEAN 539 (540)
Q Consensus 503 ~~i~~~Pt~~~~-~~g~~~~~--------~~g~~~~~~~~~~i~~~ 539 (540)
|++.++|+++++ ++|+++.+ +.|..+.++|.+.|+++
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~l 157 (188)
T 2cvb_A 112 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 157 (188)
T ss_dssp TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHH
Confidence 999999999998 78988877 11223567888888765
No 261
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=99.22 E-value=4.5e-11 Score=102.38 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=71.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH--------------------------HHHHHcC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP--------------------------EIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~--------------------------~~~~~~~ 504 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+.+.+. ++++.|+
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD 110 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence 468999999999999999999999999999974 6999999988543 4678899
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++|+++++ ++|+++.+. .+.+++.++|+++
T Consensus 111 v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~i 143 (143)
T 4fo5_A 111 LRKGFKNFLINDEGVIIAAN---VTPEKLTEILKAI 143 (143)
T ss_dssp GGGCCCEEEECTTSBEEEES---CCHHHHHHHHTC-
T ss_pred CCCCCcEEEECCCCEEEEcc---CCHHHHHHHHHhC
Confidence 9999988888 689988774 3567888888753
No 262
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=99.21 E-value=2e-11 Score=97.27 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=66.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
..+.++.|+++||++|+.+++.++++.+ ++.|..+|++ ++++++++|+ .++|++ |.+|+.+ ..+..+.+
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~--~~~g~~~~ 85 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL--MMHRVNTS 85 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE--EESSCCHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE--EecCCCHH
Confidence 4578899999999999999999987542 4889999999 8899999999 999985 5688765 34557888
Q ss_pred HHHHHHHhhC
Q 009224 531 EYREFIEANK 540 (540)
Q Consensus 531 ~~~~~i~~~l 540 (540)
+|.++|++++
T Consensus 86 ~l~~~l~~~~ 95 (100)
T 1wjk_A 86 KLEKQLRKLS 95 (100)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 263
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=99.21 E-value=4.1e-11 Score=105.37 Aligned_cols=72 Identities=15% Similarity=0.391 Sum_probs=64.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++|+||++||++|+.+.|.++++++++.+ ++.|+.|+++.. .+++++|+|
T Consensus 47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 126 (165)
T 3s9f_A 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV 126 (165)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence 468999999999999999999999999999974 799999999877 678999999
Q ss_pred CcccEEEEEe-C-CeEEEEe
Q 009224 506 MGTPCVQFFK-N-KEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~-~-g~~~~~~ 523 (540)
.++|++++++ + |+++.+.
T Consensus 127 ~~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 127 ESIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEeCCCCEEEecc
Confidence 9999999995 4 8887653
No 264
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=99.21 E-value=7.2e-11 Score=123.64 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++.+.++........+..||++||++|+.+.|.+++++.+++ ++.|.++|.+++++++++|+|+++||+++ ||+.+.
T Consensus 106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~ 182 (521)
T 1hyu_A 106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFG 182 (521)
T ss_dssp HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEE
T ss_pred HHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEe
Confidence 333445544556778999999999999999999999999987 79999999999999999999999999877 998876
Q ss_pred EeeCCCCHHHHHHHHHh
Q 009224 522 TVPGVKMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~ 538 (540)
+ |..+.++|.+++++
T Consensus 183 ~--G~~~~~~l~~~l~~ 197 (521)
T 1hyu_A 183 Q--GRMTLTEIVAKVDT 197 (521)
T ss_dssp E--SCCCHHHHHHHHCC
T ss_pred c--CCCCHHHHHHHHhh
Confidence 5 99999999999865
No 265
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=99.19 E-value=5.7e-11 Score=101.85 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++++++. .++.++.|+++.+ .+++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence 46899999999999999999999999999997 4799999999863 468899999
Q ss_pred CcccEEEEEe--CCeEEEEe
Q 009224 506 MGTPCVQFFK--NKEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~--~g~~~~~~ 523 (540)
.++|+++++. +|+++.+.
T Consensus 107 ~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 107 KSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCcEEecc
Confidence 9999999996 89887653
No 266
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.19 E-value=6e-11 Score=101.86 Aligned_cols=94 Identities=7% Similarity=0.045 Sum_probs=75.6
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEE-eC-C
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFF-KN-K 517 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~-~~-g 517 (540)
-.....+.+++++|+||++||..|+.|.... .++.+.+.+++.++.+|.+. +.+++++|++.++|+++|+ .+ |
T Consensus 34 Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G 113 (153)
T 2dlx_A 34 AKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG 113 (153)
T ss_dssp HHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTC
T ss_pred HHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCC
Confidence 3445577789999999999999999997765 55665555578899999975 3468899999999999999 45 7
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.++.| .+.++|.++|+++
T Consensus 114 ~~l~~~~g-~~~~~fl~~L~~~ 134 (153)
T 2dlx_A 114 QKLVEWHQ-LDVSSFLDQVTGF 134 (153)
T ss_dssp CCCEEESS-CCHHHHHHHHHHH
T ss_pred cEeeecCC-CCHHHHHHHHHHH
Confidence 77777766 8999999888765
No 267
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=99.18 E-value=6.5e-11 Score=101.76 Aligned_cols=72 Identities=18% Similarity=0.378 Sum_probs=63.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++++++. .++.++.|+++.+ .+++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (146)
T 1o8x_A 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 106 (146)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence 46899999999999999999999999999997 4799999999864 468899999
Q ss_pred CcccEEEEEe--CCeEEEEe
Q 009224 506 MGTPCVQFFK--NKEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~--~g~~~~~~ 523 (540)
.++|+++++. +|+++.+.
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 107 ESIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCeEEEec
Confidence 9999999997 89887654
No 268
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=99.17 E-value=7.7e-11 Score=100.93 Aligned_cols=72 Identities=21% Similarity=0.493 Sum_probs=63.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++++++. .++.++.|+++.+ .+++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (144)
T 1o73_A 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence 46899999999999999999999999999997 4799999998864 368899999
Q ss_pred CcccEEEEEe--CCeEEEEe
Q 009224 506 MGTPCVQFFK--NKEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~--~g~~~~~~ 523 (540)
.++|+++++. +|+++.+.
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 107 ESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCeEEecc
Confidence 9999999998 88877653
No 269
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=99.15 E-value=2.2e-11 Score=115.45 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE---C-cCCHHHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID---I-EEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd---~-~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
...+.+.+.+.+ +++||++||++|++++|.+++++++++ ++.+| . +++++++++|+|+++||+++ ||
T Consensus 189 ~~~la~~l~~~~---vV~F~A~WC~~Ck~l~p~le~lA~~l~----~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G 259 (291)
T 3kp9_A 189 AVGLAAHLRQIG---GTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQECTEAGITSYPTWII--NG 259 (291)
T ss_dssp HHHHHHHHHHTT---CEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TT
T ss_pred HHHHHHHhCCCC---EEEEECCCCHHHHHHHHHHHHHHHHcC----EEEEeecCchhhHHHHHHHcCCcccCeEEE--CC
Confidence 334445444443 688999999999999999999987663 33333 2 33789999999999999544 88
Q ss_pred eEEEEeeCCCCHHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~ 537 (540)
+ ++.|..+.+++.++++
T Consensus 260 ~---~~~G~~~~~~L~~~l~ 276 (291)
T 3kp9_A 260 R---TYTGVRSLEALAVASG 276 (291)
T ss_dssp E---EEESCCCHHHHHHHTC
T ss_pred E---EecCCCCHHHHHHHHC
Confidence 7 3899999999999875
No 270
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=99.14 E-value=2.5e-10 Score=100.82 Aligned_cols=89 Identities=8% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC-----CCeEEEEEECcCC----------------------------H
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFD-----ENVHFVEIDIEED----------------------------P 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-----~~~~~~~vd~~~~----------------------------~ 497 (540)
.+++++++||++||++ |+...|.++++.+++. .++.|+.|+++.. .
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA 104 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3689999999999998 9999999999999984 4799999998731 1
Q ss_pred HHHHHcCCCccc---------------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 498 EIAEAAGIMGTP---------------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 498 ~~~~~~~i~~~P---------------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++.|++...| +++++ ++|+++.++.|..+.+++.+.|++++
T Consensus 105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 163 (171)
T 2rli_A 105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM 163 (171)
T ss_dssp HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 578899999888 66666 88999999999999999999988753
No 271
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=99.14 E-value=2.3e-11 Score=92.77 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=51.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++.||++||++|+.+.+.++++.++++.++.++.+|.+ ++.+++++|++.++|++++ +|+.+.
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~ 67 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH 67 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE
Confidence 67799999999999999999988777544555555554 5788999999999999877 887653
No 272
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=99.13 E-value=1.5e-10 Score=102.35 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEECcCC----------------------------HH
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFDE----NVHFVEIDIEED----------------------------PE 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~~~----------------------------~~ 498 (540)
.+++++++||++||++ |+...|.++++.+++.+ ++.|+.|+++.+ .+
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE 113 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence 4689999999999997 99999999999999873 699999998743 24
Q ss_pred HHHHcCC---------------CcccEEEEEeCCeEEEEeeCCC--CHHHHHHHHHhhC
Q 009224 499 IAEAAGI---------------MGTPCVQFFKNKEMIRTVPGVK--MKKEYREFIEANK 540 (540)
Q Consensus 499 ~~~~~~i---------------~~~Pt~~~~~~g~~~~~~~g~~--~~~~~~~~i~~~l 540 (540)
++++|++ ..+|+++++.+|+++.++.|.. +.+++.+.|+++|
T Consensus 114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~ll 172 (172)
T 2k6v_A 114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL 172 (172)
T ss_dssp HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHCC
T ss_pred HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHhC
Confidence 5666654 5789999988999999999988 8999999999875
No 273
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=99.13 E-value=2.2e-11 Score=100.24 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=62.4
Q ss_pred HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----HHHHHHcCCCcccEEEEEeCCeEEEEe
Q 009224 449 YHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----PEIAEAAGIMGTPCVQFFKNKEMIRTV 523 (540)
Q Consensus 449 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 523 (540)
+.+.+ ++++ ||++||++|+.+.|.++++..+ +.++.+|.+.+ .+++++|++.++|++ |.+|+.+..+
T Consensus 16 ~~~~~-~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~ 87 (116)
T 2e7p_A 16 LASSA-PVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGC 87 (116)
T ss_dssp HHTSS-SEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECH
T ss_pred HHcCC-CEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECCh
Confidence 33433 5555 9999999999999999887433 45556655555 468999999999998 6799988877
Q ss_pred eCCC---CHHHHHHHHHhh
Q 009224 524 PGVK---MKKEYREFIEAN 539 (540)
Q Consensus 524 ~g~~---~~~~~~~~i~~~ 539 (540)
.|.. +.++|.++|++.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~ 106 (116)
T 2e7p_A 88 DTVVEKHQRNELLPLLQDA 106 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHhCChHHHHHHHc
Confidence 6654 666788888753
No 274
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=99.13 E-value=1.8e-10 Score=101.05 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC-----CeEEEEEECcCC----------------------------H
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFDE-----NVHFVEIDIEED----------------------------P 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~vd~~~~----------------------------~ 497 (540)
.+++++++||++||++ |+...|.++++.+++.+ ++.++.|+++.. .
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~ 101 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 101 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3689999999999998 99999999999998853 789999988752 1
Q ss_pred HHHHHcCCCccc---------------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 498 EIAEAAGIMGTP---------------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 498 ~~~~~~~i~~~P---------------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++.|++...| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160 (164)
T ss_dssp HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 378889999999 56666 88999999999999999998888753
No 275
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.11 E-value=2.1e-10 Score=105.71 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=72.7
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-----------------------------CCHHHHH
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-----------------------------EDPEIAE 501 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-----------------------------~~~~~~~ 501 (540)
++ +++++||++||++|+...|.++++.+++.+ ++.|+.|+++ .+.++++
T Consensus 58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 137 (218)
T 3u5r_E 58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK 137 (218)
T ss_dssp TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence 45 699999999999999999999999999975 4999999983 4568899
Q ss_pred HcCCCcccEEEEE-eCCeEEEEee---------CCCCHHHHHHHHHhh
Q 009224 502 AAGIMGTPCVQFF-KNKEMIRTVP---------GVKMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~~~Pt~~~~-~~g~~~~~~~---------g~~~~~~~~~~i~~~ 539 (540)
.|++..+|+++++ ++|+++.+.. +..+.++|.+.|+++
T Consensus 138 ~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 138 AYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp HHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred HcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHH
Confidence 9999999999999 7898875522 234567888888875
No 276
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=99.10 E-value=9.8e-12 Score=127.45 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=66.0
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecc--------cccCccccccc-e
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIG--------HSPNSQLLQGQ-V 348 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G--------~~p~~~~~~~~-~ 348 (540)
...+++.++++.| ++++++.|++|..++++ +.+.. .+ +.++.+|.||+|+| +.|++...... +
T Consensus 206 ~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~----v~v~~-~~--g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~ 277 (431)
T 3k7m_X 206 SADLVDAMSQEIP-EIRLQTVVTGIDQSGDV----VNVTV-KD--GHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVI 277 (431)
T ss_dssp THHHHHHHHTTCS-CEESSCCEEEEECSSSS----EEEEE-TT--SCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHH
T ss_pred HHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe----EEEEE-CC--CCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHH
Confidence 4567777778888 99999999999876542 44433 22 34589999999999 88887654321 1
Q ss_pred e-ccCCCCEEeCCCccccCCCceEEccccCC
Q 009224 349 E-LDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378 (540)
Q Consensus 349 ~-~~~~g~i~vd~~~~~t~~~~iya~GD~~~ 378 (540)
. ......++|+..+ ++..+++|+.||...
T Consensus 278 ~~~~~~~~~kv~~~~-~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 278 EEGHGGQGLKILIHV-RGAEAGIECVGDGIF 307 (431)
T ss_dssp HHCCCCCEEEEEEEE-ESCCTTEEEEBSSSS
T ss_pred HhCCCcceEEEEEEE-CCCCcCceEcCCCCE
Confidence 1 1223348888887 788899999999854
No 277
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=8.6e-12 Score=109.01 Aligned_cols=87 Identities=16% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHH-HHHHhC--CCeEEEEEECcCCHHHHHHcC------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGK-VIDEFD--ENVHFVEIDIEEDPEIAEAAG------------------------ 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~-~~~~~~--~~~~~~~vd~~~~~~~~~~~~------------------------ 504 (540)
.+++++++||++||++|+.+.|.+++ +.+++. .++.++.|+++++++..++|.
T Consensus 32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 111 (159)
T 2ls5_A 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR 111 (159)
Confidence 46799999999999999999999998 888876 478999999887655444443
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++|+++++ ++|+++.++.|. +.+++.++++++
T Consensus 112 ~~~~P~~~lid~~G~i~~~~~g~-~~~~l~~~l~~l 146 (159)
T 2ls5_A 112 DAGITRNVLIDREGKIVKLTRLY-NEEEFASLVQQI 146 (159)
Confidence 5779999998 899999888884 555677777654
No 278
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.09 E-value=3e-10 Score=109.27 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=112.1
Q ss_pred CEEEEEeCCccHHHHHHHHHhc-CCeEEEEEeccccc----------------------------------------ccH
Q 009224 241 QVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLR----------------------------------------ASR 279 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~-g~~v~li~~~~~~~----------------------------------------~~~ 279 (540)
..|+|||+|++|+.+|..|++. |.+|+++++.+.+. ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 99999999876431 011
Q ss_pred ----HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc---------cCCceEEEEccEEEEecccccCcccccc
Q 009224 280 ----AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV---------DTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 280 ----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
.+.+++.++.|++++.++.+.++..++ +++.++.+... ..++..++.+|.||+|+|..++......
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence 233444455799999999999998654 45666666431 1133467999999999998776432211
Q ss_pred ------c--eeccCCCCEEeCC-------CccccCCCceEEccccCCC----c--chhhhhhhchHHHHHHHHHHHHhcC
Q 009224 347 ------Q--VELDSSGYVIVEE-------GTAKTSVEGVFAAGDVQDH----E--WRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 347 ------~--~~~~~~g~i~vd~-------~~~~t~~~~iya~GD~~~~----~--~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+ ..+.....+.++. .. .+..|++|++||++.. + ......+..+|+.+|.++.++|...
T Consensus 199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~-~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~~ 277 (284)
T 1rp0_A 199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLT-REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLP 277 (284)
T ss_dssp HHHHHTTSSSCCCCCEEECHHHHHHHHHHHC-EEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhhhccCCCCcCCcCCchhhhhhHHHhhcc-ccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhhh
Confidence 1 1111222233331 22 4567999999998731 1 1235677889999999999988754
Q ss_pred c
Q 009224 406 N 406 (540)
Q Consensus 406 ~ 406 (540)
.
T Consensus 278 ~ 278 (284)
T 1rp0_A 278 N 278 (284)
T ss_dssp C
T ss_pred h
Confidence 3
No 279
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=99.09 E-value=1.7e-10 Score=115.20 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=82.9
Q ss_pred HHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCc--ccEEEEEeCCeE
Q 009224 444 ALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMG--TPCVQFFKNKEM 519 (540)
Q Consensus 444 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~--~Pt~~~~~~g~~ 519 (540)
++.++..+..++++++||++||++|+.+.+.|+++++++.+++.|+.+|++ +++.++++|+|.. +|+++++..|+.
T Consensus 126 ~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~ 205 (361)
T 3uem_A 126 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEE 205 (361)
T ss_dssp THHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--
T ss_pred cHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCc
Confidence 345666666678899999999999999999999999999988999999999 7899999999988 999999988765
Q ss_pred EEEee---CCCCHHHHHHHHHhh
Q 009224 520 IRTVP---GVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~---g~~~~~~~~~~i~~~ 539 (540)
..++. +..+.+.|.+|++++
T Consensus 206 ~~ky~~~~~~~~~~~l~~fi~~~ 228 (361)
T 3uem_A 206 MTKYKPESEELTAERITEFCHRF 228 (361)
T ss_dssp CCEECCSSCCCCHHHHHHHHHHH
T ss_pred ccccCCCccccCHHHHHHHHHHH
Confidence 55665 788999999999875
No 280
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.07 E-value=6.5e-10 Score=97.20 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=69.5
Q ss_pred CCe-EEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc---------------------CCHHHHHHcCCCc-
Q 009224 453 PRL-ICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE---------------------EDPEIAEAAGIMG- 507 (540)
Q Consensus 453 ~~~-~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~i~~- 507 (540)
+++ ++++|| ++||++|+...|.++++.+++.+ ++.|+.|+.+ .+.++++.|++.+
T Consensus 28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (161)
T 3drn_A 28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF 107 (161)
T ss_dssp TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence 454 999999 99999999999999999999975 5999999987 4568899999999
Q ss_pred ---ccEEEEE-eCCeEEEEeeC-CCCHHHHHHHH
Q 009224 508 ---TPCVQFF-KNKEMIRTVPG-VKMKKEYREFI 536 (540)
Q Consensus 508 ---~Pt~~~~-~~g~~~~~~~g-~~~~~~~~~~i 536 (540)
+|+++++ ++|+++..+.| ....+.+.+.+
T Consensus 108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il 141 (161)
T 3drn_A 108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEAL 141 (161)
T ss_dssp SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHH
T ss_pred CcccceEEEECCCCEEEEEEecCCCCCcCHHHHH
Confidence 9988888 78999999998 33434444443
No 281
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=98.64 E-value=1.5e-11 Score=105.24 Aligned_cols=71 Identities=21% Similarity=0.501 Sum_probs=60.8
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCC-------------------------HHHHHHc
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEED-------------------------PEIAEAA 503 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~-------------------------~~~~~~~ 503 (540)
++ +++++||++||++|+.+.|.++++++++. .++.++.|++++. .+++++|
T Consensus 25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (143)
T 2lus_A 25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY 104 (143)
Confidence 45 99999999999999999999999999983 3688888888755 3688899
Q ss_pred CCCcccEEEEEe-CCeEEEEe
Q 009224 504 GIMGTPCVQFFK-NKEMIRTV 523 (540)
Q Consensus 504 ~i~~~Pt~~~~~-~g~~~~~~ 523 (540)
++.++|+++++. +|+++.+.
T Consensus 105 ~v~~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 105 GITGIPALVIVKKDGTLISMN 125 (143)
Confidence 999999999995 89887763
No 282
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=99.05 E-value=1.9e-09 Score=103.69 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=77.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceeeccCcc-c----------c--CCCCCC--------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLMTTTEV-E----------N--FPGFPD-------- 150 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~~~~~~-~----------~--~~~~~~-------- 150 (540)
..+||+|||||++|+++|..|++. |++|+|+|+.+. +++........ . . ..+.+.
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~---~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~ 114 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS---PGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVV 114 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS---CCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEE
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC---CCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEE
Confidence 357999999999999999999997 999999999875 33221110000 0 0 001110
Q ss_pred CCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcE---EEEE--------C-----CeEEEecEEEEccCCCCCC
Q 009224 151 GITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPF---TVKS--------G-----ERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~---~v~~--------~-----~~~~~~d~lviAtG~~~~~ 211 (540)
.....++...+.+.+.+ .|++++.+ +|+.+..+++.+ .+.. + ...+++|.||+|+|..+..
T Consensus 115 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~ 193 (284)
T 1rp0_A 115 VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF 193 (284)
T ss_dssp ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence 01345666667766665 69999987 888998776643 3321 1 1679999999999987654
No 283
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=99.04 E-value=6.1e-10 Score=115.82 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=84.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec--cC----cccc------CCCC----CCCCChH
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT--TT----EVEN------FPGF----PDGITGP 155 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~--~~----~~~~------~~~~----~~~~~~~ 155 (540)
...+||+|||||++|+++|..|++.|++|+|||+.+. +|+.... .. .+.. ...+ .......
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~---~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 166 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK---FSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR 166 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS---CCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc---cCCCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence 4568999999999999999999999999999999876 3321100 00 0000 0000 0112346
Q ss_pred HHHHHHHHHHHHhCCEEEEe-eEEEEEee---CCcEEEEE----CC--eEEEecEEEEccCCCCCCCCCCC
Q 009224 156 DLMDRMRRQAERWGAELHQE-DVEFIDVK---SNPFTVKS----GE--RKVKCHSIVFATGATAKRLNLPR 216 (540)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~v~~i~~~---~~~~~v~~----~~--~~~~~d~lviAtG~~~~~~~ipg 216 (540)
++.+.+.+.+++.|++++.+ +|+++..+ ++.+.+.. ++ ..+++|+||+|+|..+....+.+
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~ 237 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTI 237 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccc
Confidence 77788888888899999988 88888764 34566654 33 46899999999999876544443
No 284
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=99.04 E-value=5.3e-10 Score=100.69 Aligned_cols=89 Identities=8% Similarity=0.130 Sum_probs=72.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHH-HH----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIA-EA---------------- 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~-~~---------------- 502 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|++++ .+ +.+ ++
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~ 126 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 126 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence 468999999999999999999999999999975 49999999873 22 222 22
Q ss_pred -------------cCCCccc------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 503 -------------AGIMGTP------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 503 -------------~~i~~~P------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|++.++| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 184 (190)
T 2vup_A 127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184 (190)
T ss_dssp TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3777888 66666 89999999999999999999988753
No 285
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=99.04 E-value=3.2e-10 Score=87.43 Aligned_cols=75 Identities=21% Similarity=0.508 Sum_probs=61.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcC--CCcccEEEEEeCCeEEEEeeCCCCH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAG--IMGTPCVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~ 529 (540)
.++.|+++||++|+.+.+.++++..++. ++.|..+|+++++ ++.++++ +.++|++ |.+|+.+. |.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--- 72 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--- 72 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS---
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCC-CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH---
Confidence 3678999999999999999999998876 5999999997654 8899999 9999997 55887653 32
Q ss_pred HHHHHHHHhh
Q 009224 530 KEYREFIEAN 539 (540)
Q Consensus 530 ~~~~~~i~~~ 539 (540)
++|.+++++.
T Consensus 73 ~~l~~~~~~~ 82 (85)
T 1ego_A 73 TDFAAWVKEN 82 (85)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5788888753
No 286
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.8e-10 Score=99.76 Aligned_cols=88 Identities=10% Similarity=0.230 Sum_probs=70.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHH-------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIA------------------- 500 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~------------------- 500 (540)
.+++++++||++||++|+ ..|.++++.+++.+ ++.++.|+++. . .+.+
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 109 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG 109 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence 468999999999999999 99999999999975 49999998741 1 1112
Q ss_pred -----------HHcCCCccc------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 501 -----------EAAGIMGTP------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 501 -----------~~~~i~~~P------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.|++.++| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 167 (171)
T 3cmi_A 110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167 (171)
T ss_dssp TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 236788899 66666 89999999999888888988888753
No 287
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=99.02 E-value=8.6e-10 Score=97.13 Aligned_cols=89 Identities=8% Similarity=0.068 Sum_probs=70.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HH-HHHc---------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EI-AEAA--------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~-~~~~--------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. .+ +. .+++
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 109 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS 109 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence 468999999999999999999999999999975 59999999863 11 12 1222
Q ss_pred --------------C-----CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 --------------G-----IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 --------------~-----i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +..+|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 166 (169)
T 2v1m_A 110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166 (169)
T ss_dssp TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence 2 3345766666 89999999999988888888888753
No 288
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=99.02 E-value=1e-09 Score=96.76 Aligned_cols=89 Identities=7% Similarity=0.163 Sum_probs=72.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHH-Hc---------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAE-AA--------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~-~~--------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. .+ +.++ ++
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE 110 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence 468999999999999999999999999999975 49999999863 22 2233 33
Q ss_pred --------------CC--Cccc---EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 --------------GI--MGTP---CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 --------------~i--~~~P---t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++ .++| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 167 (170)
T 2p5q_A 111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL 167 (170)
T ss_dssp TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHT
T ss_pred chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHh
Confidence 34 5678 66666 89999999999988888999998765
No 289
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=99.02 E-value=6.2e-10 Score=99.98 Aligned_cols=89 Identities=8% Similarity=0.094 Sum_probs=71.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC--------CHHHHH----H----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE--------DPEIAE----A---------------- 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~--------~~~~~~----~---------------- 502 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. ..++.+ +
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 124 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 124 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence 468999999999999999999999999999975 49999998762 122221 1
Q ss_pred ----------------cCCCccc---EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 503 ----------------AGIMGTP---CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 503 ----------------~~i~~~P---t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++..+| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL 182 (187)
T 3dwv_A 125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL 182 (187)
T ss_dssp -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC
T ss_pred chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 1334567 77777 89999999999999999999998875
No 290
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.02 E-value=1.3e-09 Score=112.05 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=81.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee--------ccC-----c-cccC-------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM--------TTT-----E-VENF------------- 145 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~--------~~~-----~-~~~~------------- 145 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+. +|+... ... . ...+
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~---~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK---LGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI 101 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC---CCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHh
Confidence 347999999999999999999999999999999775 322110 000 0 0000
Q ss_pred ------------CCC-----------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEE-CCeEEEec
Q 009224 146 ------------PGF-----------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKS-GERKVKCH 199 (540)
Q Consensus 146 ------------~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d 199 (540)
.+. |.......+.+.+.+.+++.|++++.+ +|+.+..+++. +.|.. ++..+++|
T Consensus 102 ~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad 181 (447)
T 2i0z_A 102 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN 181 (447)
T ss_dssp SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred cCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECC
Confidence 000 111134677788888888999999987 88888876665 66665 44569999
Q ss_pred EEEEccCCCC
Q 009224 200 SIVFATGATA 209 (540)
Q Consensus 200 ~lviAtG~~~ 209 (540)
.||+|||..+
T Consensus 182 ~VVlAtGg~s 191 (447)
T 2i0z_A 182 HVVIAVGGKS 191 (447)
T ss_dssp CEEECCCCSS
T ss_pred EEEECCCCCc
Confidence 9999999865
No 291
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=99.01 E-value=8.2e-10 Score=98.60 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=71.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHH-c---------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEA-A--------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~-~--------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|++++ .+ +.+++ +
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~ 127 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT 127 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence 468999999999999999999999999999975 49999999863 22 22333 2
Q ss_pred --------CCCccc-------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 --------GIMGTP-------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 --------~i~~~P-------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+..+| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 244678 55555 89999999999999999999999875
No 292
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=99.01 E-value=2.7e-09 Score=108.75 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=81.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccceeecc------------------------------Ccc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQLMTT------------------------------TEV 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg~~~~~------------------------------~~~ 142 (540)
.+||+|||||++|+++|..|++.|++|+|+|+...... .|..+... ...
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 84 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI 84 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence 47999999999999999999999999999999763221 11111000 000
Q ss_pred c--cC-------CCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE--EEE-CCe--EEEecEEEEccCC
Q 009224 143 E--NF-------PGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT--VKS-GER--KVKCHSIVFATGA 207 (540)
Q Consensus 143 ~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~--v~~-~~~--~~~~d~lviAtG~ 207 (540)
. .+ ...........+...+.+.+++.|++++.+ +|++++.+++.+. +.. ++. ++++|.||.|+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~ 164 (421)
T 3nix_A 85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGY 164 (421)
T ss_dssp EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGG
T ss_pred EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCC
Confidence 0 00 011112456778888888888899999988 8999988776654 333 444 6999999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 165 ~s 166 (421)
T 3nix_A 165 GR 166 (421)
T ss_dssp GC
T ss_pred ch
Confidence 64
No 293
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=99.01 E-value=1.9e-09 Score=108.79 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=78.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC---cceeeccC--------c-------cc----cCCCC---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP---GGQLMTTT--------E-------VE----NFPGF--- 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~---gg~~~~~~--------~-------~~----~~~~~--- 148 (540)
.|||+||||||||+++|+.|+++|++|+|+||.+..+.+ |+.+.... . .. ..+.-
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence 489999999999999999999999999999997653211 22221100 0 00 00000
Q ss_pred ---------C---CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEE---ECC--eEEEecEEEEccCCCC
Q 009224 149 ---------P---DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVK---SGE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 149 ---------~---~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~---~~~--~~~~~d~lviAtG~~~ 209 (540)
. .......+...+.+...+.|++++.+ +++.+..+++.+... .++ .++++|.||.|.|...
T Consensus 84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence 0 01234667777888888999999887 788887777654432 233 3588999999999764
No 294
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=99.01 E-value=2.7e-09 Score=111.26 Aligned_cols=118 Identities=24% Similarity=0.397 Sum_probs=80.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---------------CC--------Ccce-------eeccCcc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---------------GV--------PGGQ-------LMTTTEV 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---------------~~--------~gg~-------~~~~~~~ 142 (540)
..+||+|||||++|+++|+.|++.|++|+|+|+.... +. .+|. +......
T Consensus 106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~ 185 (549)
T 3nlc_A 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549)
T ss_dssp CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecc
Confidence 4589999999999999999999999999999987531 00 0111 1000000
Q ss_pred cc-----------CCCCC---------C--CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEE-CCeEEE
Q 009224 143 EN-----------FPGFP---------D--GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKS-GERKVK 197 (540)
Q Consensus 143 ~~-----------~~~~~---------~--~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~-~~~~~~ 197 (540)
.. ..+.+ . .....++.+.+.+.+++.|++++.+ +|+.+..+++.+. |.. ++..+.
T Consensus 186 ~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~ 265 (549)
T 3nlc_A 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK 265 (549)
T ss_dssp TTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEE
T ss_pred ccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEE
Confidence 00 00100 0 0012557777888888899999988 8999987766543 554 566899
Q ss_pred ecEEEEccCCCCC
Q 009224 198 CHSIVFATGATAK 210 (540)
Q Consensus 198 ~d~lviAtG~~~~ 210 (540)
+|.||+|+|..+.
T Consensus 266 Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 266 SRHVVLAVGHSAR 278 (549)
T ss_dssp CSCEEECCCTTCH
T ss_pred CCEEEECCCCChh
Confidence 9999999998763
No 295
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.00 E-value=1.2e-09 Score=98.84 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| ++||++|+...|.++++.+++.+ ++.|+.|+.+. +.++++.|+
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 123 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 123 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence 3689999999 99999999999999999999975 69999998874 346788899
Q ss_pred CC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 505 IM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 505 i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
+. .+|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 168 (195)
T 2bmx_A 124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168 (195)
T ss_dssp CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99 99999998 7899999888765 678888888764
No 296
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=99.00 E-value=1.8e-09 Score=109.19 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC---Ccceeec---------cC-c----------cccCCCC--
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV---PGGQLMT---------TT-E----------VENFPGF-- 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~---~gg~~~~---------~~-~----------~~~~~~~-- 148 (540)
.+||+|||||++|+++|..|++.|++|+|+|+....+. .++.+.. .. . .....+.
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~~G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcCCCCEE
Confidence 47999999999999999999999999999999774221 1111100 00 0 0000000
Q ss_pred ------------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEE----CCeEEEecEEEEccCCCC
Q 009224 149 ------------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKS----GERKVKCHSIVFATGATA 209 (540)
Q Consensus 149 ------------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~----~~~~~~~d~lviAtG~~~ 209 (540)
........+...+.+.+++.|++++.+ +|+.+..+++.+. |.. ++..+++|.||.|+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G~~s 162 (397)
T 3cgv_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EEEC-----CCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred EEEeccccCCceeEEEeHHHHHHHHHHHHHhCCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCCcch
Confidence 001234567788888888899999887 8999988877665 544 345799999999999764
No 297
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=98.99 E-value=1e-09 Score=98.56 Aligned_cols=88 Identities=9% Similarity=0.069 Sum_probs=75.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| ++||++|+...|.++++.+++.+ ++.++.|+.+. +.++++.|+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD 109 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence 3589999999 99999999999999999999864 69999998874 456888999
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
+. ++|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 155 (187)
T 1we0_A 110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155 (187)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 98 99999999 8899999888764 677888888764
No 298
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=98.99 E-value=9e-10 Score=99.91 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|+...|.++++.+++.+ ++.++.|+.+. +.++++
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR 111 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence 4689999999 99999999999999999999864 59999998874 457889
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. ++|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999 99988888 7899999988865 567888888764
No 299
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.98 E-value=2.2e-09 Score=107.89 Aligned_cols=119 Identities=24% Similarity=0.285 Sum_probs=84.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccceeecc---------------------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMTT--------------------------- 139 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~~--------------------------- 139 (540)
....+||+|||||++|+++|+.|+++|++|+|+|+...++- .+|.+...
T Consensus 14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (382)
T 1ryi_A 14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEEL 93 (382)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHH
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999765320 00000000
Q ss_pred -------------Ccc------------------------------ccCCCCC------------CCCChHHHHHHHHHH
Q 009224 140 -------------TEV------------------------------ENFPGFP------------DGITGPDLMDRMRRQ 164 (540)
Q Consensus 140 -------------~~~------------------------------~~~~~~~------------~~~~~~~~~~~~~~~ 164 (540)
... ..+|.+. ....+..+...+.+.
T Consensus 94 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (382)
T 1ryi_A 94 YALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKA 173 (382)
T ss_dssp HHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHH
T ss_pred HHhhCCCcCeeecceEEEEeCHHHHHHHHHHhhcCCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHHHHHHH
Confidence 000 0011110 123456788888888
Q ss_pred HHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 165 AERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 165 ~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+++.|++++.+ +|+.+..+++.+.+..+...+.+|.||+|+|...
T Consensus 174 ~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 174 AKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWS 219 (382)
T ss_dssp HHHTTCEEETTCCCCEEECSSSSEEEEETTEEEEEEEEEECCGGGT
T ss_pred HHHCCCEEEcCCcEEEEEEECCEEEEEcCCceEEcCEEEECCChhH
Confidence 99999999987 8999988877787777666899999999999753
No 300
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.98 E-value=1.9e-09 Score=114.34 Aligned_cols=118 Identities=23% Similarity=0.282 Sum_probs=80.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeeccCc-c------------------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTTTE-V------------------------ 142 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~~~-~------------------------ 142 (540)
...+||+|||||+||++||+.|++.|++|+|+||.+..+ ..+|.+..... .
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~ 203 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNI 203 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence 346899999999999999999999999999999977632 11111110000 0
Q ss_pred ----------------------c--------cCCCC--CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe
Q 009224 143 ----------------------E--------NFPGF--PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV 182 (540)
Q Consensus 143 ----------------------~--------~~~~~--~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~ 182 (540)
. ...+. +. ...+..+...+.+.+++.|++++.+ +|+.+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~ 283 (571)
T 1y0p_A 204 NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLK 283 (571)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEE
T ss_pred CCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEE
Confidence 0 00000 00 0234678888888899999999987 8888877
Q ss_pred eC-Cc---EEEEE-CCe--EEEecEEEEccCCCC
Q 009224 183 KS-NP---FTVKS-GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 183 ~~-~~---~~v~~-~~~--~~~~d~lviAtG~~~ 209 (540)
++ +. +.+.. ++. .+.+|.||+|||...
T Consensus 284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 65 43 44544 454 689999999999853
No 301
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=98.97 E-value=1.6e-09 Score=96.85 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CHH----HHHHc----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DPE----IAEAA---------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~----~~~~~---------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.|+.|+++. .++ .++++
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 125 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 125 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence 468999999999999999999999999999975 59999998762 111 12222
Q ss_pred ---------------C-----CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 ---------------G-----IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ---------------~-----i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +..+|+++++ ++|+++.++.|..+.++|.+.|+++|
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL 183 (183)
T 2obi_A 126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 183 (183)
T ss_dssp SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGGC
T ss_pred hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHhC
Confidence 2 3335987777 89999999999988899999988875
No 302
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.97 E-value=2.4e-09 Score=108.36 Aligned_cols=116 Identities=19% Similarity=0.162 Sum_probs=82.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc--ceeec-----------------------------c-C-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG--GQLMT-----------------------------T-T- 140 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g--g~~~~-----------------------------~-~- 140 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.......+ ..+.. . .
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~ 85 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE 85 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence 4799999999999999999999999999999975421000 00000 0 0
Q ss_pred ccccC-------CCCCCCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCCC
Q 009224 141 EVENF-------PGFPDGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 141 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~~ 208 (540)
....+ +.+.......++.+.+.+.+++. |++++.+ +|+.++.+++.+ .+.. ++..+++|.||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCC
Confidence 00000 00011245567888888888887 8999887 899998887777 6765 55689999999999986
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 166 s 166 (399)
T 2x3n_A 166 S 166 (399)
T ss_dssp C
T ss_pred h
Confidence 4
No 303
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=98.97 E-value=1.9e-09 Score=98.39 Aligned_cols=89 Identities=8% Similarity=-0.030 Sum_probs=69.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C-HHH---HH------HcCC--------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D-PEI---AE------AAGI-------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~-~~~---~~------~~~i-------- 505 (540)
.+++++|+||++||++|+...|.++++.+++.+ ++.++.|++++ . .++ ++ ++++
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 125 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC 125 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence 468999999999999999999999999999975 59999999862 1 222 22 3332
Q ss_pred ---------------------------------------------CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 506 ---------------------------------------------MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 506 ---------------------------------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
...|+.+|+ ++|+++.++.|..+.+++.+.|+++
T Consensus 126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l 205 (208)
T 2f8a_A 126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 205 (208)
T ss_dssp CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 234766666 8999999999998888899888875
Q ss_pred C
Q 009224 540 K 540 (540)
Q Consensus 540 l 540 (540)
|
T Consensus 206 l 206 (208)
T 2f8a_A 206 L 206 (208)
T ss_dssp H
T ss_pred h
Confidence 3
No 304
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.95 E-value=4.1e-09 Score=111.23 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=81.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc------------------------------ce-eecc--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG------------------------------GQ-LMTT-- 139 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g------------------------------g~-~~~~-- 139 (540)
..+||+|||||++|+++|..|++.|++|+|||+.......+ +. +...
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 127 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFT 127 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccc
Confidence 35899999999999999999999999999999865422000 00 0000
Q ss_pred --CccccCC-C--CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE---CC-eEEEecEEEEccCCCC
Q 009224 140 --TEVENFP-G--FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS---GE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 140 --~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lviAtG~~~ 209 (540)
....... . ....+....+...+.+.+++.|++++.+ +|+.++.+++.+++.. ++ .++++|+||.|.|...
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 128 QGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp TCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred ccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 0000000 0 1113456778888888888899999887 8999988888887765 44 5899999999999864
No 305
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=98.95 E-value=3.5e-09 Score=92.33 Aligned_cols=87 Identities=11% Similarity=0.189 Sum_probs=71.9
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
+++++++|| ++||++|+...|.++++.+++.+ ++.++.|+++. +.++++.|++.
T Consensus 36 k~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~ 115 (160)
T 1xvw_A 36 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN 115 (160)
T ss_dssp TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcc
Confidence 349999998 99999999999999999999964 69999998863 66789999998
Q ss_pred ---ccc--EEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 507 ---GTP--CVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 507 ---~~P--t~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
++| +++++ ++|+++.++.|.. ..+++.+.|+++
T Consensus 116 ~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 116 EQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred ccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 66666 8999999988875 346666666654
No 306
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=98.94 E-value=1.8e-09 Score=96.23 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHH-cCCC------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEA-AGIM------------ 506 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~-~~i~------------ 506 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. .+ +.+++ +++.
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 116 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS 116 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence 467999999999999999999999999999976 49999998764 22 34445 4332
Q ss_pred --------------cccE-----EEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 507 --------------GTPC-----VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 507 --------------~~Pt-----~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++|+ +++.++|+++.++.|..+.+++.+.|+++
T Consensus 117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 168 (180)
T 3kij_A 117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL 168 (180)
T ss_dssp TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHH
T ss_pred cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 2565 45558999999999988877666666554
No 307
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=107.02 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=74.1
Q ss_pred cccEEEECCCHHHHHHHHHHHH---cCCceEEEcCCCCCCCCcceeeccCcc-----------ccC---C----------
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR---ANLKPVVFEGYQAGGVPGGQLMTTTEV-----------ENF---P---------- 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~---~g~~v~lie~~~~~~~~gg~~~~~~~~-----------~~~---~---------- 146 (540)
++||+|||||++|+++|+.|++ .|++|+|+||... +||.+...... ..+ +
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~---~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~ 77 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD---SGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFY 77 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS---SCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC---CccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHH
Confidence 3689999999999999999999 8999999999765 55533221100 000 0
Q ss_pred ----------CCCC-------------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEE
Q 009224 147 ----------GFPD-------------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSI 201 (540)
Q Consensus 147 ----------~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~l 201 (540)
.+.. +.....+........++.|++++.+ +|+.+..+++.|+|.. ++..+.+|+|
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~v 157 (342)
T 3qj4_A 78 DELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLI 157 (342)
T ss_dssp HHHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEE
T ss_pred HHHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEE
Confidence 0000 0000011122233344458999887 8999999888898876 4556899999
Q ss_pred EEccCC
Q 009224 202 VFATGA 207 (540)
Q Consensus 202 viAtG~ 207 (540)
|+|+..
T Consensus 158 V~A~p~ 163 (342)
T 3qj4_A 158 VLTMPV 163 (342)
T ss_dssp EECSCH
T ss_pred EECCCH
Confidence 999984
No 308
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=98.93 E-value=2.4e-09 Score=108.66 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=77.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-------------------------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT------------------------------- 139 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~------------------------------- 139 (540)
..+.+||+|||||++|+++|+.|++.|++|+|+|+.......+..+...
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 99 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDF 99 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEET
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEEC
Confidence 3456899999999999999999999999999999976532111111000
Q ss_pred C--c-cccC---------CCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEcc
Q 009224 140 T--E-VENF---------PGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFAT 205 (540)
Q Consensus 140 ~--~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAt 205 (540)
. . ...+ ......+....+...+.+.+.+ ++++.+ +|+.++.+++.+++.. ++.++.+|.||.|.
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~Ad 177 (407)
T 3rp8_A 100 RSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD 177 (407)
T ss_dssp TTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECC
T ss_pred CCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECC
Confidence 0 0 0000 0001112345566666666655 677777 8999999888888876 56789999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|...
T Consensus 178 G~~S 181 (407)
T 3rp8_A 178 GSHS 181 (407)
T ss_dssp CTTC
T ss_pred CcCh
Confidence 9764
No 309
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.92 E-value=8.7e-09 Score=103.57 Aligned_cols=117 Identities=25% Similarity=0.247 Sum_probs=83.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccce---------------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQ--------------------------------- 135 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~--------------------------------- 135 (540)
..+||+|||||++|+++|+.|+++|++|+|+|+...+.. .+|.
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 83 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYGFSFK 83 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 358999999999999999999999999999999754320 0110
Q ss_pred ----eeccCc--------------------c---------ccCCCCC-------------CCCChHHHHHHHHHHHHHhC
Q 009224 136 ----LMTTTE--------------------V---------ENFPGFP-------------DGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 136 ----~~~~~~--------------------~---------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 169 (540)
+..... . ..+|.+. ....+..+...+.+.+++.|
T Consensus 84 ~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G 163 (382)
T 1y56_B 84 QTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYG 163 (382)
T ss_dssp CCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHHHHHHTT
T ss_pred ccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHHHHHHHCC
Confidence 000000 0 0011111 01235667778888888999
Q ss_pred CEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCCC
Q 009224 170 AELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~~ 209 (540)
++++.+ +|+.+..+++.+. |.+....+++|+||+|+|...
T Consensus 164 v~i~~~~~v~~i~~~~~~v~gv~~~~g~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 164 AKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIVVNATNAWA 205 (382)
T ss_dssp CEEECSCCEEEEEESSSBEEEEEETTEEEECSEEEECCGGGH
T ss_pred CEEECCceEEEEEEECCEEEEEEECCcEEECCEEEECcchhH
Confidence 999987 8999988887777 776656899999999999753
No 310
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=98.92 E-value=6e-09 Score=103.99 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEEC-C--eEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKSG-E--RKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~~-~--~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++. +.+..+ + ..+++|+||+|+|..
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~ 208 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLH 208 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcc
Confidence 4567778888889999999976 89999887655 777663 3 489999999999975
No 311
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=98.90 E-value=4.1e-09 Score=93.43 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=67.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-------------------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------------------------------------- 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------------------------------------- 494 (540)
..++.++.|+..|||+|+.+.|.++++.+++++ +.|+..+..
T Consensus 21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~ 99 (175)
T 3gyk_A 21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN 99 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence 357899999999999999999999999999875 777766632
Q ss_pred --------------------------------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 --------------------------------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 --------------------------------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++ +|+ .+.|..+.+.|.+.|++.
T Consensus 100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~ 171 (175)
T 3gyk_A 100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRA 171 (175)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHH
Confidence 2334677899999999876 775 567999999999999875
No 312
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.90 E-value=1.1e-08 Score=108.41 Aligned_cols=118 Identities=21% Similarity=0.403 Sum_probs=80.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeeccCc--------------------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTTTE-------------------------- 141 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~~~-------------------------- 141 (540)
...+||+|||||+||++||+.|++.|++|+||||.+..+ ..+|.+.....
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~ 198 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ 198 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999977532 01111111000
Q ss_pred --------------------------c---ccCCCC--CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe
Q 009224 142 --------------------------V---ENFPGF--PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV 182 (540)
Q Consensus 142 --------------------------~---~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~ 182 (540)
+ ....+. +. ...+..+...+.+.+++.|++++.+ +|+.+..
T Consensus 199 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~ 278 (566)
T 1qo8_A 199 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVV 278 (566)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEE
T ss_pred CCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence 0 000010 00 0235678888888899999999987 8888877
Q ss_pred eC-Cc---EEEEE-CCe--EEEecEEEEccCCCC
Q 009224 183 KS-NP---FTVKS-GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 183 ~~-~~---~~v~~-~~~--~~~~d~lviAtG~~~ 209 (540)
++ +. +.+.. ++. .+.+|.||+|||...
T Consensus 279 ~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 279 NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence 66 43 44443 454 689999999999864
No 313
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=98.90 E-value=3.9e-09 Score=94.51 Aligned_cols=89 Identities=9% Similarity=0.017 Sum_probs=71.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHHHHcCC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIAEAAGI-------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~~~~i-------------- 505 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. . .+.++++++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 127 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 127 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence 468999999999999999999999999999975 59999998763 1 123333322
Q ss_pred ----------------------CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 ----------------------MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 ----------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
..+|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL 185 (185)
T 2gs3_A 128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 185 (185)
T ss_dssp BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHHC
T ss_pred hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHhC
Confidence 124777777 88999999999988889999998875
No 314
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.90 E-value=5.6e-09 Score=104.90 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=79.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-c------------c------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-E------------V------------------ 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-~------------~------------------ 142 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.......+..+.... . .
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 47999999999999999999999999999999765321111111000 0 0
Q ss_pred -ccCC--CCC-CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCC
Q 009224 143 -ENFP--GFP-DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 143 -~~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
..++ +.+ ......++...+.+.+.+.|++++.+ +|+.++. ++ .+.. ++.++++|.||.|+|..+.
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTCH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccHH
Confidence 0000 000 11234677888888888899999987 7888877 33 5544 5678999999999998753
No 315
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=98.89 E-value=1.5e-08 Score=102.49 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+.+++.++++|.||+|+|..
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRGTYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSCEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCCEEEcCEEEEcCCcC
Confidence 355666777788889999987 899998888888887766689999999999975
No 316
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.89 E-value=1.4e-08 Score=106.99 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=83.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cce-----------------------------------e
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQ-----------------------------------L 136 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~-----------------------------------~ 136 (540)
..+||+|||||++|+++|+.|+++|++|+|||+....... .+. +
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 83 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRL 83 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEE
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeE
Confidence 3589999999999999999999999999999997542100 000 0
Q ss_pred ecc--C-cc--------------cc-CCCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC----cEEEEE-C
Q 009224 137 MTT--T-EV--------------EN-FPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN----PFTVKS-G 192 (540)
Q Consensus 137 ~~~--~-~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~----~~~v~~-~ 192 (540)
... . .. .. .|.....+....+...+.+.+++.|++++.+ +|+++..+++ .+++.. +
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~ 163 (535)
T 3ihg_A 84 AESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAG 163 (535)
T ss_dssp ESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEE
T ss_pred EeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEc
Confidence 000 0 00 00 1111123456778888889999999999987 8999988877 777654 3
Q ss_pred C---eEEEecEEEEccCCCC
Q 009224 193 E---RKVKCHSIVFATGATA 209 (540)
Q Consensus 193 ~---~~~~~d~lviAtG~~~ 209 (540)
+ .++++|+||.|+|...
T Consensus 164 ~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 164 PDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp TTEEEEEEEEEEEECCCTTC
T ss_pred CCCeEEEEeCEEEECCCCcc
Confidence 2 6799999999999864
No 317
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.88 E-value=1.8e-08 Score=105.36 Aligned_cols=117 Identities=23% Similarity=0.349 Sum_probs=81.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-CcceeeccC------------c-----c--------c----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQLMTTT------------E-----V--------E---- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg~~~~~~------------~-----~--------~---- 143 (540)
.+||+|||||++|+++|..|++.|++|+|||+...... .|..+.... . . .
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE 86 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence 48999999999999999999999999999999763221 111111000 0 0 0
Q ss_pred ------cCC-------CCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc---EEEEE-CC--eEEEecEEEE
Q 009224 144 ------NFP-------GFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP---FTVKS-GE--RKVKCHSIVF 203 (540)
Q Consensus 144 ------~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~---~~v~~-~~--~~~~~d~lvi 203 (540)
.+. .....+....+...+.+.+++.|++++.+ +|+.+..+++. +.+.. ++ ..+++|.||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~ 166 (512)
T 3e1t_A 87 PEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVD 166 (512)
T ss_dssp SSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred ccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence 000 00012455678888888888899999988 89999887774 34443 34 4799999999
Q ss_pred ccCCCCC
Q 009224 204 ATGATAK 210 (540)
Q Consensus 204 AtG~~~~ 210 (540)
|+|....
T Consensus 167 AdG~~S~ 173 (512)
T 3e1t_A 167 ASGNRTR 173 (512)
T ss_dssp CCCTTCS
T ss_pred CCCcchH
Confidence 9998653
No 318
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.87 E-value=2.8e-08 Score=105.21 Aligned_cols=118 Identities=27% Similarity=0.329 Sum_probs=78.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeecc-Ccc-------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTT-TEV------------------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~-~~~------------------------- 142 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+..+ ..+|.+... ...
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~ 204 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN 204 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence 45799999999999999999999999999999977522 011111100 000
Q ss_pred ---------------------ccC--------CCC--CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee
Q 009224 143 ---------------------ENF--------PGF--PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK 183 (540)
Q Consensus 143 ---------------------~~~--------~~~--~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~ 183 (540)
... .+. +. ...+..+...+.+.+++.|++++.+ +|+.+..+
T Consensus 205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 284 (572)
T 1d4d_A 205 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED 284 (572)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred CHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEEC
Confidence 000 000 00 0125567888888899999999987 78888655
Q ss_pred C-Cc---EEEEE-CCe--EEEecEEEEccCCCCC
Q 009224 184 S-NP---FTVKS-GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 184 ~-~~---~~v~~-~~~--~~~~d~lviAtG~~~~ 210 (540)
+ +. +.+.. ++. .+.+|.||+|||..+.
T Consensus 285 ~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 285 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp --CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 5 43 44443 443 6889999999998653
No 319
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.87 E-value=2.6e-08 Score=98.09 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=70.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc----ccCCCCCCCCChHH-------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV----ENFPGFPDGITGPD------------- 156 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~----~~~~~~~~~~~~~~------------- 156 (540)
++||+|||||++|+++|..|++.|++|+|+|+... +||.+...... .....+-. .....
T Consensus 2 ~~dV~IIGaG~~Gl~~A~~L~~~G~~V~vlE~~~~---~gg~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (336)
T 1yvv_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG---SGGRMSSKRSDAGALDMGAQYFT-ARDRRFATAVKQWQAQGH 77 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCGGGCEEEETTEEEECSCCCBC-CCSHHHHHHHHHHHHHTS
T ss_pred CceEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC---CcccceeEecCCCeEecCCCeEe-cCCHHHHHHHHHHHhCCC
Confidence 36999999999999999999999999999999865 44432210000 00000000 00000
Q ss_pred ------------------------------HHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEE-EecEEEE
Q 009224 157 ------------------------------LMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKV-KCHSIVF 203 (540)
Q Consensus 157 ------------------------------~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~-~~d~lvi 203 (540)
-...+.+.+.+ +++++.+ +|+.++.+++.+.+.. ++... .+|+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~a~~vV~ 156 (336)
T 1yvv_A 78 VAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRG-DMPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVII 156 (336)
T ss_dssp EEEECCCEEEESSSBCCCCCTTSCEEEESSCTHHHHHHHHT-TCCEECSCCEEEEEECSSCEEEEETTSCEEEEESEEEE
T ss_pred eeeccccceeccCcccccCCCCCccEEcCccHHHHHHHHHc-cCcEEecCEEEEEEEeCCEEEEEeCCCcCccccCEEEE
Confidence 01112222222 7888877 8999998888898877 44444 4899999
Q ss_pred ccCCC
Q 009224 204 ATGAT 208 (540)
Q Consensus 204 AtG~~ 208 (540)
|+|..
T Consensus 157 a~g~~ 161 (336)
T 1yvv_A 157 ATPAP 161 (336)
T ss_dssp CSCHH
T ss_pred cCCHH
Confidence 99964
No 320
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.86 E-value=1.3e-08 Score=105.97 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=82.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-ceeecc-----------------------Cc------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-GQLMTT-----------------------TE------ 141 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g~~~~~-----------------------~~------ 141 (540)
+..+||+||||||+|+++|..|++.|++|+|||+.......+ +..... ..
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 89 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPV 89 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceec
Confidence 345899999999999999999999999999999965422110 000000 00
Q ss_pred -cccCC-CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCC
Q 009224 142 -VENFP-GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATA 209 (540)
Q Consensus 142 -~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~ 209 (540)
..... .++ ..+....+...+.+.+.+.|++++.+ +|++++.+++.+++.. ++ .++++|+||.|.|...
T Consensus 90 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 90 DFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred ccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 00000 011 11234667778888888889999987 8999988888887765 33 2799999999999864
No 321
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=98.86 E-value=4.7e-09 Score=96.39 Aligned_cols=80 Identities=24% Similarity=0.478 Sum_probs=63.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI--------------------------------------- 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~--------------------------------------- 493 (540)
.+++++.||++|||+|+++.|.++++.+. ++.++.++.
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~ 162 (216)
T 1eej_A 86 EKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS 162 (216)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence 57899999999999999999999998763 455554432
Q ss_pred -----cCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 494 -----EEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 494 -----~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.+++++++|+++||+ ++.||+ ++.|..+.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 163 CDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp CSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 123467889999999998 556785 567999999999998864
No 322
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=98.85 E-value=1.5e-08 Score=101.47 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+.++...+++|+||+|+|..
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~~~a~~vV~a~G~~ 203 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGTW 203 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCeEEcCEEEEcCCcc
Confidence 467777888888899999987 899998887778887765579999999999975
No 323
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=98.85 E-value=1.2e-08 Score=106.13 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=81.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-ceeecc------------Ccc---------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-GQLMTT------------TEV--------------- 142 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g~~~~~------------~~~--------------- 142 (540)
..+.+||+||||||+|+++|..|++.|++|+|||+.+.....+ +..... ...
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 87 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLP 87 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhcccccccccccee
Confidence 3456899999999999999999999999999999965422110 000000 000
Q ss_pred ---ccCC-CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCC
Q 009224 143 ---ENFP-GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATA 209 (540)
Q Consensus 143 ---~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~ 209 (540)
.... .++ ..+....+...+.+.+++.|++++.+ +|+++..+++.+++.. ++ .++++|+||.|.|...
T Consensus 88 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 88 IDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred cccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0000 000 11234567777888888889999987 8999988888877764 22 2799999999999864
No 324
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.85 E-value=2.3e-08 Score=106.02 Aligned_cols=116 Identities=25% Similarity=0.329 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHc------CCceEEEcCCCCCCC---Ccceeec--------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA------NLKPVVFEGYQAGGV---PGGQLMT-------------------------- 138 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~------g~~v~lie~~~~~~~---~gg~~~~-------------------------- 138 (540)
.+||+|||||+||+++|..|++. |++|+||||....+. .|+.+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~ 114 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 114 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence 48999999999999999999999 999999999765221 1211110
Q ss_pred ---cC-ccccCCCCCC---------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC-cEE-EEEC----------
Q 009224 139 ---TT-EVENFPGFPD---------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN-PFT-VKSG---------- 192 (540)
Q Consensus 139 ---~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~-~~~-v~~~---------- 192 (540)
.. ....++..+. .....++.+.+.+.+++.|++++.+ +|+.+..+++ .+. |...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~ 194 (584)
T 2gmh_A 115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAP 194 (584)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCE
T ss_pred eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCc
Confidence 00 0001111111 1244577888888888999999988 7888877653 333 4432
Q ss_pred ------CeEEEecEEEEccCCCC
Q 009224 193 ------ERKVKCHSIVFATGATA 209 (540)
Q Consensus 193 ------~~~~~~d~lviAtG~~~ 209 (540)
+.++++|+||+|+|...
T Consensus 195 ~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 195 KTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp EEEEECCCEEECSEEEECCCTTC
T ss_pred ccccCCceEEECCEEEEeeCCCc
Confidence 25799999999999864
No 325
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=98.84 E-value=2e-08 Score=101.08 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+.+++..+++|.||+|+|..
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~ 204 (389)
T 2gf3_A 150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAW 204 (389)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 567778888888999999987 899998877778887777789999999999975
No 326
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=98.84 E-value=2.6e-08 Score=107.81 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+.|.+ ++.++.+|.||+|+|..
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence 4567777788888899999987 8999998888888877 55789999999999975
No 327
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=98.84 E-value=8.3e-09 Score=93.76 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=73.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|....+.++++.+++.+ ++.|+.|+++. +.++++
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 114 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK 114 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence 3679999999 99999999999999999999964 69999998864 346888
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++.+..|.. +.+++.+.|+++
T Consensus 115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 99999 99988888 8899998877653 457888887754
No 328
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=98.84 E-value=1.2e-08 Score=92.36 Aligned_cols=88 Identities=7% Similarity=0.102 Sum_probs=73.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|....+.++++.+++.+ ++.|+.|+++. +.++++
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 112 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE 112 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHHHHH
Confidence 4679999999 99999999999999999999864 69999998873 236889
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 113 ~~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~l~~l~~l 161 (197)
T 1qmv_A 113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF 161 (197)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HcCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 99998 79988887 8899998887753 467788877753
No 329
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=98.83 E-value=2.2e-08 Score=87.86 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=71.7
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++||+.| |++|+...|.++++.+++ .++.|+.|+.+. +.++++.|++..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~ 121 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI 121 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence 4679999999999 999999999999999999 679999998863 346788899987
Q ss_pred ------ccEEEEE-eCCeEEEEeeCCC-----CHHHHHHHHHhh
Q 009224 508 ------TPCVQFF-KNKEMIRTVPGVK-----MKKEYREFIEAN 539 (540)
Q Consensus 508 ------~Pt~~~~-~~g~~~~~~~g~~-----~~~~~~~~i~~~ 539 (540)
.|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 4988777 7899999887532 347788888765
No 330
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=98.83 E-value=3.9e-08 Score=100.77 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe----eEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE----DVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~----~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~~~ 209 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+. |.+ ++.++.+|.||+|+|...
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 3567788888889999999987 6999998888777 776 455899999999999753
No 331
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.82 E-value=2e-08 Score=101.54 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=75.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-CCCcceeeccCc-c----------------------ccC-CCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-GVPGGQLMTTTE-V----------------------ENF-PGF 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-~~~gg~~~~~~~-~----------------------~~~-~~~ 148 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. ...+..+..... . ... .+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 479999999999999999999999999999997652 111211111000 0 000 000
Q ss_pred -------CC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 149 -------PD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 149 -------~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
+. ......+.+.+.+.+ .+++++.+ +|+++..+++.+++.. ++.++++|.||.|+|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred ccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 00 011234444444433 37888877 8999988888888776 566899999999999864
No 332
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=98.82 E-value=2.5e-08 Score=105.44 Aligned_cols=116 Identities=20% Similarity=0.295 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cce------------------------------eeccCcc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQ------------------------------LMTTTEV 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~------------------------------~~~~~~~ 142 (540)
.+||+|||||+||+++|..|++.|++|+|+|+....... |.. +......
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 489999999999999999999999999999997542210 100 0000000
Q ss_pred ----ccCC-------CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee-CCcEEEEE--CC--eEEEecEEEE
Q 009224 143 ----ENFP-------GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK-SNPFTVKS--GE--RKVKCHSIVF 203 (540)
Q Consensus 143 ----~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~-~~~~~v~~--~~--~~~~~d~lvi 203 (540)
..+. ..+ ..+....+...+.+.+++.|++++.+ +|+.+..+ ++.+.|.. ++ ..+++|.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~ 182 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVID 182 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEE
Confidence 0000 000 12455778888888888999999988 89999875 45555544 45 5799999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|+|...
T Consensus 183 AdG~~S 188 (591)
T 3i3l_A 183 AGGSGG 188 (591)
T ss_dssp CCGGGC
T ss_pred CCCCcc
Confidence 999764
No 333
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=98.82 E-value=1.4e-08 Score=101.93 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+.|.++...+.+|+||+|+|..
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i~a~~VV~A~G~~ 208 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGAW 208 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSEEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCCEEEcCEEEECCChh
Confidence 4567777788888899999876 899998888888888766689999999999974
No 334
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=98.82 E-value=2e-08 Score=101.60 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=75.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC--CcceeeccCc--c-----------------------c---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV--PGGQLMTTTE--V-----------------------E--- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~--~gg~~~~~~~--~-----------------------~--- 143 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.... .|+.+..... . .
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 47999999999999999999999999999999754211 1222211100 0 0
Q ss_pred -----cC--C----CCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCC
Q 009224 144 -----NF--P----GFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 144 -----~~--~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
.. + .....+...++.+.+.+.+. +++++.+ +|+.++.+++.+++.. ++.++++|.||.|+|....
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence 00 0 00001233444444444433 2566666 8999988888888776 5567999999999998653
No 335
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.81 E-value=1.8e-08 Score=103.68 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=79.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CC-Ccceeec----c---------------Ccccc-CCC--
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GV-PGGQLMT----T---------------TEVEN-FPG-- 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~-~gg~~~~----~---------------~~~~~-~~~-- 147 (540)
.+||+|||||+||+++|..|++.|++|+|+|+.... .. .|..+.. . ..... .+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ 85 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCc
Confidence 479999999999999999999999999999997641 11 1111100 0 00000 000
Q ss_pred -------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE---EEE--CCe--EEEecEEEEccCCCCC
Q 009224 148 -------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT---VKS--GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 148 -------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~---v~~--~~~--~~~~d~lviAtG~~~~ 210 (540)
.........+.+.+.+.+.+.|++++.+ +|+.+..+++.+. +.. ++. .+++|.||.|+|....
T Consensus 86 ~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~ 163 (453)
T 3atr_A 86 TVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163 (453)
T ss_dssp CEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred eEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence 0011344667788888888899999987 8888887776643 433 444 7899999999997643
No 336
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=98.81 E-value=2.2e-08 Score=88.44 Aligned_cols=89 Identities=8% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhCC---CeEEEEEECcC---CH-------------------------HH
Q 009224 452 SPRLICVLYTSPTCG-PCRTLKPILGKVIDEFDE---NVHFVEIDIEE---DP-------------------------EI 499 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~---~~-------------------------~~ 499 (540)
.+++++++||++||+ +|....+.+.++.+++.+ ++.|+.|+++. .+ ++
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~ 111 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE 111 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence 468999999999999 999999999999998863 49999998862 21 12
Q ss_pred HHH----------------cCCCcccEEEEE-eCCeEEEEeeCCC--CHHHHHHHHHhhC
Q 009224 500 AEA----------------AGIMGTPCVQFF-KNKEMIRTVPGVK--MKKEYREFIEANK 540 (540)
Q Consensus 500 ~~~----------------~~i~~~Pt~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~~l 540 (540)
.+. +++...|+++++ ++|+++.++.|.. +.+++.+.|++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS 171 (174)
T ss_dssp HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 222 235668976666 8899999999986 4788999998764
No 337
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=98.81 E-value=1.4e-08 Score=93.51 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=73.5
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHHH
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAEA 502 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~~ 502 (540)
+++++++|| ++||++|+...+.|+++.+++. .++.|+.|+++. +.++++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 589999999 9999999999999999999985 369999998863 3468899
Q ss_pred cCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 503 AGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 503 ~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
|++. .+|+++++ ++|+++.+..|. .+.+++.+.|+++
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l 183 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999 99999999 889999887765 3557888887754
No 338
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=98.81 E-value=1.4e-08 Score=91.53 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|....|.++++.+++. .++.++.|+.+. +.++++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 109 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR 109 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence 4679999999 9999999999999999999985 469999998863 346888
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++.+..|.. +.+++.+.|+++
T Consensus 110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 99999 89999999 8899998887753 367777777653
No 339
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=98.81 E-value=1.7e-08 Score=92.38 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=73.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|....|.|+++++++. .++.++.|+.|. +.++++
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 130 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK 130 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence 4679999999 9999999999999999999985 468999888763 346888
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++.+..|.. +.+++.+.|+++
T Consensus 131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l 178 (213)
T 2i81_A 131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178 (213)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999 89988887 7899998876643 477888887754
No 340
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=98.80 E-value=6.8e-09 Score=94.90 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=64.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+++++.|+.+|||+|+++.|.++++.+. ++.++.+...
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~ 162 (211)
T 1t3b_A 86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK 162 (211)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence 57899999999999999999999997653 3555544331
Q ss_pred ------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 ------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 ------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++ .||+ ++.|..+.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~ 209 (211)
T 1t3b_A 163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET 209 (211)
T ss_dssp CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence 2346778999999999887 7886 578999999999999864
No 341
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=98.80 E-value=4.9e-12 Score=134.85 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=49.6
Q ss_pred cCCCeEEEeCceEEEEeeCCC-CceeeEEEEEccCCceEEEEccEEEEecccccCccccc
Q 009224 287 NNPNITVHFNTETVDVVSNTK-GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ 345 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~-g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~ 345 (540)
++.||++++++.++++..+++ +++.+|.+.+..+|...++.+|.||+|+|..|+..++.
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~ 330 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV 330 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence 345899999999999987643 47889999876667778899999999999999988764
No 342
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=98.80 E-value=2.8e-08 Score=100.57 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEECCeEEEecEEEEccCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++. +.+..+...+.+|+||+|+|...
T Consensus 173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 173 HDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTCCEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCceEECCEEEECCchhH
Confidence 3467778888888999999986 89999876654 45665444799999999999753
No 343
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.78 E-value=5.1e-08 Score=105.64 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEEC-Ce-EEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSG-ER-KVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~-~~-~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+.|.++ +. .+.+|.||+|+|..
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence 3566777778888899999887 89999988888888763 34 79999999999975
No 344
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=98.77 E-value=7.9e-09 Score=78.63 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=55.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
++.|+++||++|+.+.+.+++. ++.|..+|+++++++.+ ++++.++|++ +.+|+. ..| .+.++|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g-~~~~~l~ 70 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSG-FRPDMIN 70 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EES-CCHHHHG
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---Eec-CCHHHHH
Confidence 5679999999999999998863 47788999998877654 5899999997 458864 334 4677788
Q ss_pred HHHHhh
Q 009224 534 EFIEAN 539 (540)
Q Consensus 534 ~~i~~~ 539 (540)
++|+++
T Consensus 71 ~~l~~~ 76 (81)
T 1h75_A 71 RLHPAP 76 (81)
T ss_dssp GGSCCC
T ss_pred HHHhcc
Confidence 877654
No 345
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.77 E-value=2.4e-08 Score=100.74 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CCC-cceeeccC---------------------cc-------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GVP-GGQLMTTT---------------------EV------- 142 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~~-gg~~~~~~---------------------~~------- 142 (540)
+||+|||||++|+++|..|++.|++|+|+|+.... ... ++.+.... ..
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 79999999999999999999999999999987631 001 11110000 00
Q ss_pred -c--cCC----CC-CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC-CcEEEE--ECCe--EEEecEEEEccCCC
Q 009224 143 -E--NFP----GF-PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKS-NPFTVK--SGER--KVKCHSIVFATGAT 208 (540)
Q Consensus 143 -~--~~~----~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~-~~~~v~--~~~~--~~~~d~lviAtG~~ 208 (540)
. .++ +. .......++.+.+.+.+.+.|++++.+ +|+.+..++ +.+.+. .++. ++++|.||.|+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~ 162 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH 162 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0 000 00 001234567777778788889999887 888887653 445554 3666 79999999999976
Q ss_pred CC
Q 009224 209 AK 210 (540)
Q Consensus 209 ~~ 210 (540)
..
T Consensus 163 S~ 164 (394)
T 1k0i_A 163 GI 164 (394)
T ss_dssp CS
T ss_pred cH
Confidence 53
No 346
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.76 E-value=7.6e-08 Score=100.49 Aligned_cols=36 Identities=39% Similarity=0.445 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||||+||++||+.|++.|++|+|+||...
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~ 75 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSG 75 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 458999999999999999999999999999999775
No 347
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=98.76 E-value=1.6e-08 Score=91.67 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC----CCeEEEEEECcC---C-------------------------HH
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFD----ENVHFVEIDIEE---D-------------------------PE 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~----~~~~~~~vd~~~---~-------------------------~~ 498 (540)
.+++++++||++||++ |....|.++++.+++. +++.++.|++|. . .+
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~ 119 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN 119 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence 4689999999999998 9999999999777664 478889888873 1 24
Q ss_pred HHHHcCCC-ccc---------------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 499 IAEAAGIM-GTP---------------CVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 499 ~~~~~~i~-~~P---------------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.|++. ..| +++++ ++|+++..+.|..+.+++.+.|+++
T Consensus 120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~ 177 (200)
T 2b7k_A 120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEH 177 (200)
T ss_dssp HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHH
T ss_pred HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 67788887 344 54555 8999999998877766666666553
No 348
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=98.76 E-value=2e-08 Score=88.95 Aligned_cols=85 Identities=9% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------C--------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIE--------------E--------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--------------~--------~~~~~~~~~i~~~ 508 (540)
.+++++++||+.| |++|+...|.++++.++ .++.|+.|+.+ . +.++++.|++...
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 120 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA 120 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence 3679999999999 99999999999999988 57899999887 2 3467889999887
Q ss_pred ---------cEEEEE-eCCeEEEEeeC--CCCHHHHHHHHHh
Q 009224 509 ---------PCVQFF-KNKEMIRTVPG--VKMKKEYREFIEA 538 (540)
Q Consensus 509 ---------Pt~~~~-~~g~~~~~~~g--~~~~~~~~~~i~~ 538 (540)
|+++++ ++|+++.++.| ..+..++.++|++
T Consensus 121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 877776 78999988863 3333345555543
No 349
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.75 E-value=5.5e-08 Score=98.72 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=76.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccC-----------------------cc--cc---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTT-----------------------EV--EN--- 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~-----------------------~~--~~--- 144 (540)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.....+..+.... .. ..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 47999999999999999999999999 999999765221111111000 00 00
Q ss_pred -----C-----CC--CC-CCCChHHHHHHHHHHHHH-hC-CEEEEe-eEEEEEeeCCcEEEEE-C---C--eEEEecEEE
Q 009224 145 -----F-----PG--FP-DGITGPDLMDRMRRQAER-WG-AELHQE-DVEFIDVKSNPFTVKS-G---E--RKVKCHSIV 202 (540)
Q Consensus 145 -----~-----~~--~~-~~~~~~~~~~~~~~~~~~-~~-v~~~~~-~v~~i~~~~~~~~v~~-~---~--~~~~~d~lv 202 (540)
. .+ .+ ......++.+.+.+.+.+ .| ++++.+ +|+.++. ++.+++.. + + .++++|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV 162 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLV 162 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEE
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEE
Confidence 0 00 00 012345677777777776 46 578776 8888887 66666643 2 5 579999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|+|...
T Consensus 163 ~AdG~~S 169 (410)
T 3c96_A 163 GADGIHS 169 (410)
T ss_dssp ECCCTTC
T ss_pred ECCCccc
Confidence 9999764
No 350
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=98.74 E-value=6.3e-08 Score=99.68 Aligned_cols=100 Identities=14% Similarity=0.231 Sum_probs=82.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+. + . |. ...++.+.+.+.+++.|++++
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~Gv~i~ 226 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR---I----L--------PT-----MDLEVSRAAERVFKKQGLTIR 226 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----C--------TT-----SCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997553 1 1 11 235677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|+.++.+++.+.+.. ++..+.+|.||+|+|.+|+...
T Consensus 227 ~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 227 TGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEG 268 (455)
T ss_dssp CSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTT
T ss_pred ECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCC
Confidence 97 8999998877777765 5678999999999999887644
No 351
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=98.73 E-value=4.1e-08 Score=91.62 Aligned_cols=84 Identities=13% Similarity=0.341 Sum_probs=67.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+.+++.|+.+|||+|+++.+.++++.++ +++.|+.++..
T Consensus 97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~ 174 (241)
T 1v58_A 97 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP 174 (241)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence 46789999999999999999999998775 36777766542
Q ss_pred ------------CCHHHHHHcCCCcccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 ------------EDPEIAEAAGIMGTPCVQFFK-NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 ------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++.. +|+. .+..|..+.++|.++|++.
T Consensus 175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~ 231 (241)
T 1v58_A 175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNK 231 (241)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC-
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHH
Confidence 123456789999999999986 5754 6788999999999998865
No 352
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=98.73 E-value=3.3e-08 Score=73.79 Aligned_cols=69 Identities=26% Similarity=0.499 Sum_probs=55.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
++.|+++||++|+.+.+.++++ ++.|..+|+++++++.+ ++++.++|++++ +|+. +.|. +.++|.
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~-~~~~l~ 70 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGF-RPERIK 70 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESC-CHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCC-CHHHHH
Confidence 5679999999999999999874 47788899999887665 899999999873 7764 4455 677888
Q ss_pred HHHH
Q 009224 534 EFIE 537 (540)
Q Consensus 534 ~~i~ 537 (540)
++|+
T Consensus 71 ~~l~ 74 (75)
T 1r7h_A 71 QLQA 74 (75)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8875
No 353
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=98.73 E-value=4.8e-08 Score=90.04 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=70.8
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++|+||+ .||++|....|.++++.+++.+ ++.|+.|++|. +.++++
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 147 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK 147 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence 46899999995 9999999999999999999964 59999998873 235778
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~ 538 (540)
.|++. .+|+++++ ++|+++..+.|.. ..+++.+.|++
T Consensus 148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 89998 89988888 7899998887653 34566666654
No 354
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.72 E-value=5.8e-08 Score=94.34 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=72.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCC---CCcceeec-----cCcc-----ccCC-----CCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGG---VPGGQLMT-----TTEV-----ENFP-----GFPDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~---~~gg~~~~-----~~~~-----~~~~-----~~~~~~ 152 (540)
..+||+|||||++|+++|+.|+++ |++|+|+|+....+ +.++.... .... ...+ .+....
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~ 157 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVK 157 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEES
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEe
Confidence 358999999999999999999998 99999999976521 11111100 0000 0000 000011
Q ss_pred ChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeC-----------------C-----cEEEEE-------------CCeE
Q 009224 153 TGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKS-----------------N-----PFTVKS-------------GERK 195 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~-----------------~-----~~~v~~-------------~~~~ 195 (540)
...++...+.+.+.+ .+++++.+ .++.+..++ + ++.+.. +..+
T Consensus 158 ~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~ 237 (344)
T 3jsk_A 158 HAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNT 237 (344)
T ss_dssp CHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEE
T ss_pred cHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceE
Confidence 235566777777777 59998887 667765444 1 111110 2257
Q ss_pred EEecEEEEccCCCC
Q 009224 196 VKCHSIVFATGATA 209 (540)
Q Consensus 196 ~~~d~lviAtG~~~ 209 (540)
+++++||+|||...
T Consensus 238 i~Ak~VV~ATG~~s 251 (344)
T 3jsk_A 238 INAPVIISTTGHDG 251 (344)
T ss_dssp EECSEEEECCCSSS
T ss_pred EEcCEEEECCCCCc
Confidence 89999999999653
No 355
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=98.70 E-value=5.1e-08 Score=100.14 Aligned_cols=103 Identities=25% Similarity=0.260 Sum_probs=81.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+. +.. .....++.+.+.+.+++.|+++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~l~----------------~~~~~~~~~~l~~~l~~~gv~i 208 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR---PLG----------------VYLDKEFTDVLTEEMEANNITI 208 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---TTT----------------TTCCHHHHHHHHHHHHTTTEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc---ccc----------------ccCCHHHHHHHHHHHHhCCCEE
Confidence 458999999999999999999999999999997553 110 0123577788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
+.+ +|+.++.+++.+.+..++..+.+|.||+|+|.+|+.+.+
T Consensus 209 ~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~ 251 (447)
T 1nhp_A 209 ATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWL 251 (447)
T ss_dssp EESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEESCGGG
T ss_pred EcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCChHHH
Confidence 997 788888664333455567789999999999998875433
No 356
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=98.70 E-value=8e-08 Score=87.71 Aligned_cols=88 Identities=10% Similarity=-0.032 Sum_probs=68.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHHH------HcCCCc------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIAE------AAGIMG------ 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~------~~~i~~------ 507 (540)
.+++++|+||++||++|+ ..|.|+++.++|.+ ++.++.|++++ . .+.++ ++++..
T Consensus 55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~ 133 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKG 133 (215)
T ss_dssp TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeee
Confidence 568999999999999999 89999999999964 59999998752 1 12344 554310
Q ss_pred ----------------------------------------c---cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 ----------------------------------------T---PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ----------------------------------------~---Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ |+.+|+ ++|+++.++.|..+.+++.+.|+++|
T Consensus 134 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~ll 210 (215)
T 2i3y_A 134 DVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYL 210 (215)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHG
T ss_pred ccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 1 566666 88999999999888888999888764
No 357
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=98.70 E-value=1.1e-07 Score=95.56 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=81.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++|+.+. +.. ...+.++.+.+.+.+++.|++++
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~~~----------------~~~~~~~~~~l~~~l~~~gv~i~ 205 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ---VMP----------------GLLHPAAAKAVQAGLEGLGVRFH 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---SST----------------TTSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc---hhh----------------cccCHHHHHHHHHHHHHcCCEEE
Confidence 57899999999999999999999999999997543 110 11235677888888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +|..++.+++.+.+.. ++..+.+|.||+|+|.+|+.
T Consensus 206 ~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 206 LGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp ESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred eCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence 88 7999988777666665 56789999999999988764
No 358
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=98.70 E-value=3e-08 Score=89.22 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=69.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC------------------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE------------------------------------ 495 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~------------------------------------ 495 (540)
..++.++.|+..|||+|+.+.|.+.++.+++++++.|..+.+.-
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~ 103 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK 103 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999999998888888776520
Q ss_pred -------------------------------------CHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 496 -------------------------------------DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 496 -------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+.+++++++|.++||+++ ||+......|..+.+.+.+.|+.
T Consensus 104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~ 181 (192)
T 3h93_A 104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY 181 (192)
T ss_dssp CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence 012345679999999877 88876666688898989888876
Q ss_pred h
Q 009224 539 N 539 (540)
Q Consensus 539 ~ 539 (540)
+
T Consensus 182 l 182 (192)
T 3h93_A 182 L 182 (192)
T ss_dssp H
T ss_pred H
Confidence 5
No 359
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=98.69 E-value=1.6e-07 Score=97.79 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceee----cc--------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLM----TT-------------------------- 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~----~~-------------------------- 139 (540)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.+. ..++.+. +.
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 82 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIA 82 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTTTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCCccc
Confidence 4799999999999999999999999999999976432 1111110 00
Q ss_pred --------Cc---------------------c---------ccC--CCCCC-----------CCChHHHHHHHHHHHHHh
Q 009224 140 --------TE---------------------V---------ENF--PGFPD-----------GITGPDLMDRMRRQAERW 168 (540)
Q Consensus 140 --------~~---------------------~---------~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~ 168 (540)
.. . ... |.+.. ...+..+...+.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l~~~a~~~ 162 (501)
T 2qcu_A 83 FPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRK 162 (501)
T ss_dssp EEEEEEEECCTTTSCHHHHHHHHHHHHSSSCCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHHHT
T ss_pred cccCeEeccCcccchHHHHHHHHHHHHhcCCcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHHHHHHHHc
Confidence 00 0 000 11110 013456777788888889
Q ss_pred CCEEEEe-eEEEEEeeCCcEEEEE----CCe--EEEecEEEEccCCC
Q 009224 169 GAELHQE-DVEFIDVKSNPFTVKS----GER--KVKCHSIVFATGAT 208 (540)
Q Consensus 169 ~v~~~~~-~v~~i~~~~~~~~v~~----~~~--~~~~d~lviAtG~~ 208 (540)
|++++.+ +|+++..+++.+.+.. +++ .+++|.||+|+|..
T Consensus 163 Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~ 209 (501)
T 2qcu_A 163 GGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPW 209 (501)
T ss_dssp TCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGG
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChh
Confidence 9999976 8999988776566654 343 78999999999975
No 360
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=98.68 E-value=5.7e-08 Score=84.82 Aligned_cols=87 Identities=10% Similarity=0.208 Sum_probs=68.7
Q ss_pred CCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCc--
Q 009224 453 PRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMG-- 507 (540)
Q Consensus 453 ~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~-- 507 (540)
+++++++||+ .||++|....|.++++.+++.+ ++.++.|..+. +.++++.|++..
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 114 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK 114 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence 5689999997 9999999999999999999864 58888888862 336677888877
Q ss_pred ----------ccEEEEE-eCCeEEEEeeCCCC---HHHHHHHHHhh
Q 009224 508 ----------TPCVQFF-KNKEMIRTVPGVKM---KKEYREFIEAN 539 (540)
Q Consensus 508 ----------~Pt~~~~-~~g~~~~~~~g~~~---~~~~~~~i~~~ 539 (540)
+|+++++ ++|+++..+.+... .+++.+.|+++
T Consensus 115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 8988888 78999888766543 35566666553
No 361
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=98.68 E-value=1.2e-07 Score=97.84 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=81.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. + ....++.+.+.+.+++.|++++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~-----~~~~~~~~~l~~~l~~~gV~i~ 228 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPE---IL------------P-----QGDPETAALLRRALEKEGIRVR 228 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SS------------T-----TSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCc---cc------------c-----ccCHHHHHHHHHHHHhcCCEEE
Confidence 47899999999999999999999999999997553 11 1 1235677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE--C--Ce--EEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS--G--ER--KVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~--~~--~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|+.++.+++.+.+.. + ++ .+.+|.||+|+|.+|+...
T Consensus 229 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~ 275 (464)
T 2eq6_A 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG 275 (464)
T ss_dssp CSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred cCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence 98 8889987776665553 4 55 8999999999999887653
No 362
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=98.68 E-value=1.2e-07 Score=82.40 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=60.8
Q ss_pred CeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCccc-
Q 009224 454 RLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMGTP- 509 (540)
Q Consensus 454 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~~P- 509 (540)
++++++|| +.||++|....|.++++.+++.+ . .++.|..+. +.++++.|++...|
T Consensus 36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~ 114 (159)
T 2a4v_A 36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL 114 (159)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence 47888987 99999999999999999999864 4 777777642 34678889999988
Q ss_pred ------EEEEEeCCeEEEEeeCCCCH
Q 009224 510 ------CVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 510 ------t~~~~~~g~~~~~~~g~~~~ 529 (540)
++++ ++|+++.++.|..+.
T Consensus 115 ~g~~~~~~li-~~G~i~~~~~g~~~~ 139 (159)
T 2a4v_A 115 SGSIRSHFIF-VDGKLKFKRVKISPE 139 (159)
T ss_dssp SCBCCEEEEE-ETTEEEEEEESCCHH
T ss_pred CCccceEEEE-cCCEEEEEEccCCcc
Confidence 6777 999999999887654
No 363
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=98.67 E-value=3.2e-08 Score=100.21 Aligned_cols=116 Identities=23% Similarity=0.241 Sum_probs=74.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCC----Ccc-ee-eccC------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGV----PGG-QL-MTTT------------------------ 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~----~gg-~~-~~~~------------------------ 140 (540)
..+||+|||||++|+++|+.|+++ |++|+|||+...+.. .++ .+ ....
T Consensus 35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 114 (405)
T 3c4n_A 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGK 114 (405)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSC
T ss_pred CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCC
Confidence 348999999999999999999999 999999999754321 122 12 1000
Q ss_pred --ccc------------------------cCCCC------C-----------CCCChHHHHHHHHHHHHHhCCEEEEe-e
Q 009224 141 --EVE------------------------NFPGF------P-----------DGITGPDLMDRMRRQAERWGAELHQE-D 176 (540)
Q Consensus 141 --~~~------------------------~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 176 (540)
.+. .+|.+ + ....+..+...+.+.+++.|++++.+ +
T Consensus 115 ~~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~ 194 (405)
T 3c4n_A 115 TLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTR 194 (405)
T ss_dssp CCCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCE
T ss_pred CCcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCE
Confidence 000 00000 0 01123457777778888889999876 7
Q ss_pred EE---------EEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 177 VE---------FIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 177 v~---------~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
|+ .+..+++.+.|.++...+++|.||+|+|..
T Consensus 195 v~~~~g~~~~~~i~~~~~~v~v~~~~g~i~a~~VV~A~G~~ 235 (405)
T 3c4n_A 195 AELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAA 235 (405)
T ss_dssp EEEETTEEEEECBCC-------CBCCEEEEEEEEEECCGGG
T ss_pred EEeccccccccceEeeCCeEEEEECCcEEECCEEEECCCcc
Confidence 77 776666666665555689999999999975
No 364
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=98.67 E-value=1.7e-07 Score=95.54 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=39.2
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~ 208 (540)
+.+.+++.|++++++ .|+.|..+++.++ |..++..+.+|.||+|+|..
T Consensus 202 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~~~~ad~VV~a~~~~ 251 (425)
T 3ka7_A 202 LETVISANGGKIHTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGHA 251 (425)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECSCHH
T ss_pred HHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCEEEECCEEEECCCHH
Confidence 344566678999988 8999998888776 66688899999999999964
No 365
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=98.64 E-value=2.5e-07 Score=97.57 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~ 52 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF 52 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSST
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 358999999999999999999999999999999754
No 366
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=98.64 E-value=1.6e-07 Score=97.03 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=82.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. + ++ ...++.+.+.+.+++.|+++
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~---------------l~---~~~~~~~~l~~~l~~~Gv~i 233 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTL---F---------------FR---EDPAIGEAVTAAFRAEGIEV 233 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT---T---------------TT---SCHHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc---c---------------CC---CCHHHHHHHHHHHHhCCCEE
Confidence 357899999999999999999999999999997543 1 11 12567888889999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++.+.+..++..+.+|.||+|+|.+|+..
T Consensus 234 ~~~~~v~~i~~~~~~~~v~~~~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 234 LEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp ETTCCEEEEEEETTEEEEEETTEEEEESEEEECSCEEESCT
T ss_pred EcCCEEEEEEEeCCEEEEEECCcEEEcCEEEECCCCCcCCC
Confidence 987 8899988777777777778899999999999987653
No 367
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=98.64 E-value=1.5e-07 Score=98.28 Aligned_cols=102 Identities=10% Similarity=0.102 Sum_probs=83.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
...+++++|||||+.|+..|..+++.|.+|||+++... + +. ...++...+...+++.|+
T Consensus 220 ~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~-------L---------~~-----~D~ei~~~l~~~l~~~gi 278 (542)
T 4b1b_A 220 KKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV-------L---------RG-----FDQQCAVKVKLYMEEQGV 278 (542)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS-------S---------TT-----SCHHHHHHHHHHHHHTTC
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc-------c---------cc-----cchhHHHHHHHHHHhhcc
Confidence 34457999999999999999999999999999986321 1 11 235788889999999999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.++.+ .+..+...++.+.+.. ++..+.+|.|++|+|.+|+...
T Consensus 279 ~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~ 323 (542)
T 4b1b_A 279 MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDG 323 (542)
T ss_dssp EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGG
T ss_pred eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccc
Confidence 99998 7888888888888766 5667889999999999887643
No 368
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.64 E-value=1.9e-07 Score=90.19 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=57.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCcc-----------cc--CCCCCC-------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEV-----------EN--FPGFPD------- 150 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~-----------~~--~~~~~~------- 150 (540)
..+||+|||||++|+++|..|++. |++|+|+|+... +|+........ .. ..+.+.
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~---~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~ 140 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA---PGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYV 140 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS---CCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEE
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc---ccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeE
Confidence 347999999999999999999999 999999999776 33221100000 00 001110
Q ss_pred -CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEee
Q 009224 151 -GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVK 183 (540)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~ 183 (540)
.....++...+.+.+.+. |++++.+ +|+.+..+
T Consensus 141 ~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~ 176 (326)
T 2gjc_A 141 VVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTR 176 (326)
T ss_dssp EESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEEC
T ss_pred EEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeec
Confidence 113455667777777764 8998876 78887655
No 369
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=98.64 E-value=7.5e-08 Score=98.06 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 163 RQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 163 ~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
+.+++.|++++++ +|+.++.+++.+ |..++..+.+|+||+|+|..
T Consensus 197 ~~~~~~G~~i~~~~~V~~i~~~~~~v-V~~~g~~~~ad~Vv~a~~~~ 242 (421)
T 3nrn_A 197 RIIMENKGKILTRKEVVEINIEEKKV-YTRDNEEYSFDVAISNVGVR 242 (421)
T ss_dssp HHHHTTTCEEESSCCEEEEETTTTEE-EETTCCEEECSEEEECSCHH
T ss_pred HHHHHCCCEEEcCCeEEEEEEECCEE-EEeCCcEEEeCEEEECCCHH
Confidence 3345568999988 899999888888 76677889999999999964
No 370
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.63 E-value=1.6e-07 Score=96.72 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=80.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. |. ...++.+.+.+.+++.|+++
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~~-----~~~~~~~~l~~~l~~~gv~i 228 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE---IL------------SG-----FEKQMAAIIKKRLKKKGVEV 228 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---SS------------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc---cc------------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 357999999999999999999999999999997553 11 11 23567788888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|..++.+++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 229 ~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 229 VTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp EESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred EeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 997 8888887766665543 245789999999999988654
No 371
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=98.63 E-value=2e-08 Score=80.68 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=54.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-------HHHHHHcCCCcccEEEEEeCCeEEEEee---CC
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-------PEIAEAAGIMGTPCVQFFKNKEMIRTVP---GV 526 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~---g~ 526 (540)
++.|+++|||+|+.+.+.++++..++++ |..+|++++ .++.+.+++.++|++ |.+|+.+..+. +.
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g~~~~~~~ 88 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGGCTDLESM 88 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHHH
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEeccHHHHHH
Confidence 6679999999999999999987555442 566777766 257788999999996 56887654322 12
Q ss_pred CCHHHHHHHHHh
Q 009224 527 KMKKEYREFIEA 538 (540)
Q Consensus 527 ~~~~~~~~~i~~ 538 (540)
....+|.++|++
T Consensus 89 ~~~g~L~~~l~~ 100 (105)
T 1kte_A 89 HKRGELLTRLQQ 100 (105)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHCCcHHHHHHH
Confidence 224556666653
No 372
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=98.62 E-value=2e-07 Score=98.06 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCCCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
..+...+.+.+++.|++++.++|+.++.++++ +.|.. ++..+.+|.||.|+|....
T Consensus 165 ~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 165 HLVADFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 45667777778888999998899999876543 34554 4558999999999997654
No 373
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=98.62 E-value=1.3e-08 Score=83.03 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=55.5
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-------HHHHHcCCCcccEEEEEeCCeEEEEeeC--
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-------EIAEAAGIMGTPCVQFFKNKEMIRTVPG-- 525 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-- 525 (540)
..++.|+++|||+|+.+.+.++++...++ + |..+|+++++ ++.+.+++.++|+++ .+|+.+..+.+
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~-~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~igg~~~~~ 93 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKFSFKRG-A--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGKTSIGGYSDLL 93 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTSCBCTT-S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETTEEEESHHHHH
T ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCcC-c--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECCEEEeCcHHHH
Confidence 34777999999999999999877532221 1 7888998874 688899999999863 48887653322
Q ss_pred -CCCHHHHHHHHHh
Q 009224 526 -VKMKKEYREFIEA 538 (540)
Q Consensus 526 -~~~~~~~~~~i~~ 538 (540)
..+.++|.++|++
T Consensus 94 ~~~~~~~L~~~L~~ 107 (114)
T 2hze_A 94 EIDNMDALGDILSS 107 (114)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHCChHHHHHHH
Confidence 1133456666654
No 374
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=98.61 E-value=2.5e-07 Score=95.37 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=80.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~gv~i~ 225 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR---L----L--------FQ-----FDPLLSATLAENMHAQGIETH 225 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997543 1 1 11 124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCe-EEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GER-KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~-~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++.+.+.. +++ .+.+|.||+|+|.+|+..
T Consensus 226 ~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 226 LEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp SSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred eCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence 98 7889987766566665 556 799999999999988764
No 375
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=98.61 E-value=7.3e-08 Score=86.93 Aligned_cols=43 Identities=14% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~ 494 (540)
.++++++.||++|||+|+.+.|.++++.+++.+++.|..++++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 3678999999999999999999999999999878999988875
No 376
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=98.60 E-value=2.7e-07 Score=94.77 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~~-----~~~~~~~~l~~~l~~~Gv~i~ 226 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA---PL------------PS-----FDPMISETLVEVMNAEGPQLH 226 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SS------------TT-----SCHHHHHHHHHHHHHHSCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc---hh------------hh-----hhHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997543 11 11 124677888888999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++. +.+.. ++..+.+|.||+|+|.+|+..
T Consensus 227 ~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 227 TNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND 268 (450)
T ss_dssp CSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred eCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 98 78888876543 55554 566899999999999988764
No 377
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=98.59 E-value=1.7e-07 Score=98.81 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCCCCC
Q 009224 153 TGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
....+...+.+.+++. |++++.++|+.+..++++ +.|.. ++..+.+|.||.|+|....
T Consensus 192 ~~~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 192 DAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp CHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred cHHHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 4456777888888888 999999899999875544 45554 5567999999999997653
No 378
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=98.59 E-value=2.2e-07 Score=96.32 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=79.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +.. ....++.+.+.+.+++.|++++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l~-----------------~~~~~~~~~l~~~l~~~gv~i~ 242 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ---IGA-----------------SMDGEVAKATQKFLKKQGLDFK 242 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SSS-----------------SSCHHHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc---ccc-----------------ccCHHHHHHHHHHHHHCCCEEE
Confidence 57999999999999999999999999999997654 111 1125677888899999999999
Q ss_pred Ee-eEEEEEe--eCCcEEEEE------CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDV--KSNPFTVKS------GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~--~~~~~~v~~------~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++. +++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 243 LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred eCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 97 8888887 455455543 246799999999999988764
No 379
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.58 E-value=3.7e-08 Score=93.83 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=37.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
+||+|||||||||+||..|+++|++|+||||.+. +||++.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~---~GG~~~ 42 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG---SGGRMS 42 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC---CCCccc
Confidence 6899999999999999999999999999999887 787654
No 380
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.58 E-value=2.9e-07 Score=96.99 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=74.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-c--------------------------------eeecc-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-G--------------------------------QLMTT- 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g--------------------------------~~~~~- 139 (540)
.+||+|||||++|+++|..|++.|++|+||||.......+ + .....
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 105 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR 105 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence 4799999999999999999999999999999965421000 0 00000
Q ss_pred --C-cc--ccCCC---------CC---CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-C---C--eE
Q 009224 140 --T-EV--ENFPG---------FP---DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-G---E--RK 195 (540)
Q Consensus 140 --~-~~--~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~---~--~~ 195 (540)
. .. ..++. .+ .......+.+.+.+.+++. ++.+ +|+++..+++.+++.. + + .+
T Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~ 182 (549)
T 2r0c_A 106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRA 182 (549)
T ss_dssp BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEE
Confidence 0 00 00000 00 1123445666677777666 5555 8899988887777654 2 4 47
Q ss_pred EEecEEEEccCCCC
Q 009224 196 VKCHSIVFATGATA 209 (540)
Q Consensus 196 ~~~d~lviAtG~~~ 209 (540)
+++|+||.|+|...
T Consensus 183 i~a~~vVgADG~~S 196 (549)
T 2r0c_A 183 VHARYLVACDGASS 196 (549)
T ss_dssp EEEEEEEECCCTTC
T ss_pred EEeCEEEECCCCCc
Confidence 99999999999864
No 381
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=98.58 E-value=4.8e-07 Score=92.94 Aligned_cols=103 Identities=23% Similarity=0.411 Sum_probs=82.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. +. +. ....++.+.+.+.+++.|+++
T Consensus 146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~~----~~d~~~~~~l~~~l~~~GV~i 206 (452)
T 3oc4_A 146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN-------LL--------PK----YFDKEMVAEVQKSLEKQAVIF 206 (452)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-------SS--------TT----TCCHHHHHHHHHHHHTTTEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc-------cc--------cc----cCCHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999999999997543 11 01 123577888889999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
+.+ .|+.++..++.+.+..++..+.+|.||+|+|..|+...+
T Consensus 207 ~~~~~v~~i~~~~~~v~v~~~~g~i~aD~Vv~A~G~~p~~~~l 249 (452)
T 3oc4_A 207 HFEETVLGIEETANGIVLETSEQEISCDSGIFALNLHPQLAYL 249 (452)
T ss_dssp EETCCEEEEEECSSCEEEEESSCEEEESEEEECSCCBCCCSSC
T ss_pred EeCCEEEEEEccCCeEEEEECCCEEEeCEEEECcCCCCChHHH
Confidence 987 888888766677666655589999999999998876543
No 382
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=98.58 E-value=2.7e-07 Score=83.77 Aligned_cols=88 Identities=7% Similarity=-0.068 Sum_probs=67.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHHH------HcCCC-------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIAE------AAGIM------- 506 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~------~~~i~------- 506 (540)
.+++++|+||++||++| ...|.|+++.++|.+ ++.++.|++++ . .+.++ ++++.
T Consensus 37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 115 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG 115 (207)
T ss_dssp TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence 46899999999999999 688999999999964 59999998652 1 12344 54331
Q ss_pred -------------------------c--------------c---cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 507 -------------------------G--------------T---PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 507 -------------------------~--------------~---Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ + |+.+|+ ++|+++.++.|..+.+++.+.|+++|
T Consensus 116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll 192 (207)
T 2r37_A 116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 192 (207)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 0 1 666666 88999999999888888888887653
No 383
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=98.58 E-value=3.1e-07 Score=95.43 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=81.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. + . + ....++.+.+.+.+++.|+++
T Consensus 197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~-----~~d~~~~~~l~~~l~~~gV~v 256 (491)
T 3urh_A 197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT---I----L--------G-----GMDGEVAKQLQRMLTKQGIDF 256 (491)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS---S----S--------S-----SSCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc---c----c--------c-----cCCHHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999999999997554 1 1 1 123577888888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEEC----C--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSG----E--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~----~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..++.+++.+.+... + ..+.+|.||+|+|..|+...
T Consensus 257 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~ 304 (491)
T 3urh_A 257 KLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG 304 (491)
T ss_dssp ECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTT
T ss_pred EECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCc
Confidence 987 88888887776655432 3 68999999999999887643
No 384
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=98.57 E-value=3.5e-07 Score=94.59 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=80.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. + . ....++.+.+.+.+++.|++++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l------------~---~-~~~~~~~~~l~~~l~~~Gv~i~ 238 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGH---VG------------G---V-GIDMEISKNFQRILQKQGFKFK 238 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SS------------C---S-SCCHHHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCc---cC------------C---c-ccCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997543 11 0 0 1235677888899999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEE------ECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVK------SGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~------~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++. +.+. .++..+.+|.||+|+|.+|+..
T Consensus 239 ~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 239 LNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp CSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred eCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence 87 88888877655 6655 2456899999999999988754
No 385
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=7e-08 Score=80.66 Aligned_cols=86 Identities=13% Similarity=0.329 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC---HH----HHHHcCCCcccEEEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED---PE----IAEAAGIMGTPCVQFF 514 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~----~~~~~~i~~~Pt~~~~ 514 (540)
...+.+.+... + ++.|+++||++|+.+++.++++ ++.|..+|++.+ ++ +.+.+++.++|++ |
T Consensus 17 ~~~~~~~i~~~-~--vvvf~~~~Cp~C~~~~~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l--~ 85 (130)
T 2cq9_A 17 VNQIQETISDN-C--VVIFSKTSCSYCTMAKKLFHDM------NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--F 85 (130)
T ss_dssp HHHHHHHHHHS-S--EEEEECSSCSHHHHHHHHHHHH------TCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE--E
T ss_pred HHHHHHHHcCC-c--EEEEEcCCChHHHHHHHHHHHc------CCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE--E
Confidence 44455555443 3 3349999999999999999886 245667788766 43 7788999999997 4
Q ss_pred eCCeEEEEee---CCCCHHHHHHHHHh
Q 009224 515 KNKEMIRTVP---GVKMKKEYREFIEA 538 (540)
Q Consensus 515 ~~g~~~~~~~---g~~~~~~~~~~i~~ 538 (540)
.+|+.+..+. +.....+|.++|++
T Consensus 86 i~G~~igg~~~l~~~~~~~~L~~~L~~ 112 (130)
T 2cq9_A 86 VNGTFIGGATDTHRLHKEGKLLPLVHQ 112 (130)
T ss_dssp ETTEEEEEHHHHHHHHHHTSSHHHHHH
T ss_pred ECCEEEcChHHHHHHHHcCcHHHHHHH
Confidence 5888765432 22334455666554
No 386
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=98.56 E-value=2.1e-07 Score=96.32 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=79.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++|+.+. +.. ....++.+.+.+.+++.|+++
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l~-----------------~~~~~~~~~l~~~l~~~Gv~i 244 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH---IGT-----------------IYDGDMAEYIYKEADKHHIEI 244 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG---TTS-----------------SSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc---hhh-----------------cCCHHHHHHHHHHHHHcCcEE
Confidence 458999999999999999999999999999997543 111 113567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++...+..++..+.+|.||+|+|..|+..
T Consensus 245 ~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~ 285 (480)
T 3cgb_A 245 LTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTD 285 (480)
T ss_dssp ECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCG
T ss_pred EcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChH
Confidence 987 7888886543334555677899999999999887643
No 387
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=98.56 E-value=4.9e-07 Score=93.26 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=80.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR---A----L--------PN-----EDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 1 1 11 235677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE--CC--eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS--GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+...
T Consensus 231 ~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 231 TATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp CSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred eCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence 98 8888887665565553 34 67999999999999887543
No 388
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=98.56 E-value=3e-07 Score=95.51 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=79.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . + .....++.+.+.+.+++.|+++
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~----l-----------~-~~~~~~~~~~l~~~l~~~GV~i 253 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT---C----L-----------A-GYYDRDLTDLMAKNMEEHGIQL 253 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T----T-----------T-TTSCHHHHHHHHHHHHTTTCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc---h----h-----------h-hHHHHHHHHHHHHHHHhCCeEE
Confidence 457899999999999999999999999999997553 1 0 0 0123567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +++.++.+++...+..++..+.+|.||+|+|.+|+..
T Consensus 254 ~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 254 AFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp EETCCEEEEECSSSCCEEEESSCEEECSEEEECCCEEECCG
T ss_pred EeCCEEEEEEcCCcEEEEEECCcEEECCEEEECCCCCcChH
Confidence 998 7888886433223444778899999999999887654
No 389
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.56 E-value=1.6e-07 Score=96.58 Aligned_cols=99 Identities=16% Similarity=0.241 Sum_probs=78.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. + ....++.+.+.+.+++.|+++
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~-----~~~~~~~~~l~~~l~~~gv~i 229 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER---IL------------P-----TYDSELTAPVAESLKKLGIAL 229 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS---SS------------T-----TSCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc---cc------------c-----ccCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997654 11 1 123467778888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ +|+.++. ++ +.+.. ++ ..+.+|.||+|+|.+|+...
T Consensus 230 ~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 230 HLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp ETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred EECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence 987 8888886 43 66653 24 57999999999999887653
No 390
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=98.54 E-value=4.1e-07 Score=93.51 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++|+.+. + . + .....++.+.+.+.+++.|+++
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~----~~~~~~~~~~l~~~l~~~Gv~i 208 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER---V----L--------Y----KYFDKEFTDILAKDYEAHGVNL 208 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS---T----T--------T----TTSCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc---h----h--------h----hhhhhhHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 1 0 0 0123567788889999999999
Q ss_pred EEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++.+. +..++.++.+|.||+|+|..|+..
T Consensus 209 ~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 209 VLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp EESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred EcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence 998 8888886555453 444778899999999999987654
No 391
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=98.54 E-value=4.1e-07 Score=95.10 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCCCCC
Q 009224 153 TGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
....+...+.+.+++.|++++.++|+.+..++++ +.|.. ++..+++|.||.|+|....
T Consensus 171 ~~~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 171 DADEVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred cHHHHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 3466777888888889999998899999875544 45554 4558999999999997543
No 392
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=98.53 E-value=3.3e-07 Score=84.17 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC----------------------------HHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED----------------------------PEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~----------------------------~~~~~ 501 (540)
.+++++|+|| +.||++|....|.|+++.+++. .++.++.|+.|.. .++++
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 134 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK 134 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence 4679999999 9999999999999999999985 4688888877531 24567
Q ss_pred HcCC-----CcccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 502 AAGI-----MGTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i-----~~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
.|++ ..+|+++++ ++|+++....|. .+.+++.+.|+++
T Consensus 135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 7888 368988888 789999887663 4567888877754
No 393
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=98.53 E-value=3.2e-07 Score=92.96 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=79.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +-.. ....++.+.+.+.+++.|+++
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~---~l~~----------------~~~~~~~~~l~~~l~~~GV~i 202 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDE---LLVR----------------VLGRRIGAWLRGLLTELGVQV 202 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SSHH----------------HHCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc---cchh----------------hcCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997554 1100 012467778888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .+..++.+++...+.. +++.+.+|.||+|+|..|+.
T Consensus 203 ~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~ 243 (410)
T 3ef6_A 203 ELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPAD 243 (410)
T ss_dssp ECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred EeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence 987 8888887665444554 67789999999999988764
No 394
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=98.53 E-value=5.1e-07 Score=99.95 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE-EEEECCeEEEecEEEEccCCC
Q 009224 153 TGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF-TVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lviAtG~~ 208 (540)
.+..+...+.+.+++.|++++.+ +|+.+..+++.+ .|.++...+++|+||+|+|..
T Consensus 149 ~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G~i~Ad~VV~AaG~~ 206 (830)
T 1pj5_A 149 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIVVSCAGFW 206 (830)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECCGGG
T ss_pred cHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCcEEECCEEEECCccc
Confidence 34567788888888999999976 899998877664 466666689999999999975
No 395
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=6.2e-07 Score=92.84 Aligned_cols=99 Identities=9% Similarity=0.151 Sum_probs=79.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. +. +. ...++.+.+.+.+++.|+++
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~Gv~i 243 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET-------VL--------RK-----FDECIQNTITDHYVKEGINV 243 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------TT-----SCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc-------cc--------cc-----cCHHHHHHHHHHHHhCCeEE
Confidence 357899999999999999999999999999997553 11 11 23567788888999999999
Q ss_pred EEe-eEEEEEeeCCc--EEEEE-CC-eEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVKS-GE-RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~~-~~-~~~~~d~lviAtG~~~~~ 211 (540)
+.+ +|+.++.+++. +.+.. ++ ..+.+|.||+|+|.+|+.
T Consensus 244 ~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 244 HKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp ECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred EeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 998 78888865443 55554 55 689999999999998875
No 396
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=98.53 E-value=7.2e-07 Score=90.56 Aligned_cols=99 Identities=16% Similarity=0.290 Sum_probs=80.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+. + . ......++.+.+.+.+++.|++++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~----l------------~~~~~~~~~~~l~~~l~~~GV~i~ 212 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPR---V----L------------ARVAGEALSEFYQAEHRAHGVDLR 212 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T----T------------TTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc---h----h------------hhhcCHHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999999999999997554 1 0 012235778888899999999999
Q ss_pred Ee-eEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ .|+.+..+++.+ .+.. +++.+.+|.||+|+|..|+.
T Consensus 213 ~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 213 TGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp ETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred ECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence 87 888888766544 3444 67789999999999998765
No 397
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=98.53 E-value=4.1e-07 Score=92.10 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=76.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ...+.++.+.+.+.+++.|++++
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l------------~----~~~~~~~~~~l~~~l~~~GV~i~ 205 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR---LM------------S----RAAPATLADFVARYHAAQGVDLR 205 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---SS------------T----TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc---cc------------c----cccCHHHHHHHHHHHHHcCcEEE
Confidence 57999999999999999999999999999997553 11 0 01235677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +++.++ + +.+.+. ++..+.+|.||+|+|..|+.
T Consensus 206 ~~~~v~~i~-~-~~v~~~-~g~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 206 FERSVTGSV-D-GVVLLD-DGTRIAADMVVVGIGVLAND 241 (408)
T ss_dssp ESCCEEEEE-T-TEEEET-TSCEEECSEEEECSCEEECC
T ss_pred eCCEEEEEE-C-CEEEEC-CCCEEEcCEEEECcCCCccH
Confidence 98 888888 3 333332 66789999999999988764
No 398
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.52 E-value=6.6e-07 Score=93.09 Aligned_cols=99 Identities=12% Similarity=0.200 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+. +. + ....++.+.+.+.+++.|++++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~d~~~~~~l~~~l~~~gv~i~ 235 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR-------IL--------R-----KFDESVINVLENDMKKNNINIV 235 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS-------SC--------T-----TSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc-------cC--------c-----ccchhhHHHHHHHHHhCCCEEE
Confidence 57999999999999999999999999999997543 11 1 1235677888899999999999
Q ss_pred Ee-eEEEEEeeCC-cEEEEE-CCeE-EEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSN-PFTVKS-GERK-VKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~-~~~v~~-~~~~-~~~d~lviAtG~~~~~~ 212 (540)
.+ +++.++.+++ .+.+.. +++. +.+|.||+|+|..|+..
T Consensus 236 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 236 TFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp CSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred ECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence 98 7888887543 355554 5566 89999999999988763
No 399
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=98.52 E-value=1.4e-07 Score=87.82 Aligned_cols=87 Identities=10% Similarity=0.161 Sum_probs=70.5
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHc
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
++ .+++.||++||+.|....+.|.++++++.+ ++.++.|++|. +.++++.|
T Consensus 33 GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~y 112 (249)
T 3a2v_A 33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRL 112 (249)
T ss_dssp TCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHH
T ss_pred CCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHh
Confidence 45 566688999999999999999999999864 69999998863 34678889
Q ss_pred CCC-------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 504 GIM-------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~-------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
++. .+|+++++ ++|+++....+.. +.+++...|+++
T Consensus 113 gv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 113 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp TCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 987 89988887 7899888877653 678888888754
No 400
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=98.52 E-value=5.3e-07 Score=96.67 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=78.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHH-cCCceEEEcCCCCCCCCcc-------------------------------eeecc-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAAR-ANLKPVVFEGYQAGGVPGG-------------------------------QLMTT- 139 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~-~g~~v~lie~~~~~~~~gg-------------------------------~~~~~- 139 (540)
..+||+|||||++||++|..|++ .|++|+||||.......+. .+...
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~ 110 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD 110 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence 35899999999999999999999 9999999999654221100 00000
Q ss_pred ----Cccc---cC----CCC---C-CCCChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC----cEEEEE------
Q 009224 140 ----TEVE---NF----PGF---P-DGITGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN----PFTVKS------ 191 (540)
Q Consensus 140 ----~~~~---~~----~~~---~-~~~~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~----~~~v~~------ 191 (540)
.... .+ ++. + .......+...+.+.+++.|+ +++.+ +|+++..+++ .+++..
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~ 190 (639)
T 2dkh_A 111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA 190 (639)
T ss_dssp TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence 0000 00 010 0 123456788888888999876 88876 8888877652 465542
Q ss_pred -CC--eEEEecEEEEccCCCC
Q 009224 192 -GE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 192 -~~--~~~~~d~lviAtG~~~ 209 (540)
++ .++++|+||.|.|.+.
T Consensus 191 ~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 191 HAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp GTTCEEEEEEEEEEECCCTTC
T ss_pred CCCCeEEEEeCEEEECCCcch
Confidence 34 5799999999999864
No 401
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=98.52 E-value=6.6e-07 Score=93.15 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=82.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+++.|+++
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~d~~~~~~l~~~l~~~GV~i 240 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH---V----L--------PY-----EDADAALVLEESFAERGVRL 240 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS---S----S--------CC-----SSHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 1 1 11 23567788889999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 241 ~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~ 282 (499)
T 1xdi_A 241 FKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTS 282 (499)
T ss_dssp ETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCS
T ss_pred EeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 988 8899987776677765 556899999999999988764
No 402
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=98.51 E-value=9e-08 Score=81.48 Aligned_cols=86 Identities=13% Similarity=0.324 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC---HH----HHHHcCCCcccEEEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED---PE----IAEAAGIMGTPCVQFF 514 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~----~~~~~~i~~~Pt~~~~ 514 (540)
...+.+.+.+. . ++.|+++||++|+.+.+.++++ ++.|..+|++.+ ++ +.+.+++.++|++ |
T Consensus 39 ~~~~~~~i~~~-~--Vvvf~~~~Cp~C~~~k~~L~~~------~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--f 107 (146)
T 2ht9_A 39 VNQIQETISDN-C--VVIFSKTSCSYCTMAKKLFHDM------NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--F 107 (146)
T ss_dssp HHHHHHHHHHC-S--EEEEECTTCHHHHHHHHHHHHH------TCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--E
T ss_pred HHHHHHHhcCC-C--EEEEECCCChhHHHHHHHHHHc------CCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE--E
Confidence 34455555443 3 3449999999999999999886 245667777765 43 7788999999997 4
Q ss_pred eCCeEEEEe---eCCCCHHHHHHHHHh
Q 009224 515 KNKEMIRTV---PGVKMKKEYREFIEA 538 (540)
Q Consensus 515 ~~g~~~~~~---~g~~~~~~~~~~i~~ 538 (540)
.+|+.+..+ .+.....+|.++|++
T Consensus 108 i~G~~igG~d~l~~l~~~g~L~~~L~~ 134 (146)
T 2ht9_A 108 VNGTFIGGATDTHRLHKEGKLLPLVHQ 134 (146)
T ss_dssp ETTEEEESHHHHHHHHHTTCHHHHHHH
T ss_pred ECCEEEeCchHHHHHHHcChHHHHHHH
Confidence 588765432 122233446666554
No 403
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=98.51 E-value=4.7e-07 Score=80.30 Aligned_cols=87 Identities=10% Similarity=0.202 Sum_probs=66.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCc-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMG- 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~- 507 (540)
.+++++++|| +.||++|....|.++++.+++.+ ++.++.|..+. +.++++.|++..
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~ 129 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE 129 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence 3568888998 99999999999999999999864 58888888763 235677788854
Q ss_pred -----------ccEEEEE-eCCeEEEEeeCCCC---HHHHHHHHHh
Q 009224 508 -----------TPCVQFF-KNKEMIRTVPGVKM---KKEYREFIEA 538 (540)
Q Consensus 508 -----------~Pt~~~~-~~g~~~~~~~g~~~---~~~~~~~i~~ 538 (540)
.|+++++ ++|+++..+.+... .+++.+.|++
T Consensus 130 ~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 130 KTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA 175 (179)
T ss_dssp ECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred ccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 5878888 78999888766543 3455555554
No 404
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=98.51 E-value=2.9e-07 Score=96.45 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCCCCC
Q 009224 153 TGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
....+...+.+.+++ .|++++.++|+.++.+++++ .+.. ++..+++|.||.|+|....
T Consensus 173 ~r~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 173 NAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp CHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 345667777888888 89999999999998765443 4444 4467999999999998643
No 405
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=98.51 E-value=2.3e-07 Score=75.95 Aligned_cols=79 Identities=13% Similarity=0.246 Sum_probs=56.9
Q ss_pred eeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhh-hHHHHHHHHHhCCCeEEEEEECcCCH-------HHHHHcCCC
Q 009224 435 TCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTL-KPILGKVIDEFDENVHFVEIDIEEDP-------EIAEAAGIM 506 (540)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~i~ 506 (540)
.++.......+.+.+... + ++.|+++|||+|+.+ ++.++++.. .++.|..+|+++++ ++.+.+++.
T Consensus 8 ~~~~~~~~~~~~~~i~~~-~--Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~ 81 (118)
T 3c1r_A 8 HMVSQETIKHVKDLIAEN-E--IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQR 81 (118)
T ss_dssp CCSCHHHHHHHHHHHHHS-S--EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHccC-c--EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCC
Confidence 344444455566666544 2 556999999999999 888766431 23778889998764 578889999
Q ss_pred cccEEEEEeCCeEEE
Q 009224 507 GTPCVQFFKNKEMIR 521 (540)
Q Consensus 507 ~~Pt~~~~~~g~~~~ 521 (540)
++|++ |.+|+.+.
T Consensus 82 tvP~v--fi~g~~ig 94 (118)
T 3c1r_A 82 TVPNI--YINGKHIG 94 (118)
T ss_dssp SSCEE--EETTEEEE
T ss_pred CcCEE--EECCEEEE
Confidence 99985 67898654
No 406
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=98.50 E-value=7.8e-07 Score=91.83 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH-HHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA-ERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 171 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+ ++.|++
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~d~~~~~~l~~~l~~~~gv~ 232 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR---C----A--------PT-----LDEDVTNALVGALAKNEKMK 232 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHHTCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc---c----c--------cc-----CCHHHHHHHHHHHhhcCCcE
Confidence 347899999999999999999999999999997543 1 1 11 2356778888888 999999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE---CC--eEEEecEEEEccCCCCCCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lviAtG~~~~~~ 212 (540)
++.+ +|+.++.+++.+.+.. ++ ..+.+|.||+|+|.+|+..
T Consensus 233 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 233 FMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp EECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCT
T ss_pred EEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCC
Confidence 9997 8888987766665553 34 5799999999999988754
No 407
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=98.50 E-value=3.6e-07 Score=80.42 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----------------------HHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----------------------PEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~i~- 506 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|..+.. .++ +.|++.
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 123 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLI 123 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBB
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEe
Confidence 3678999999 899999999999999999988 6788888887532 234 555554
Q ss_pred --------cccEEEEE-eCCeEEEEeeC-----CCCHHHHHHHHHhhC
Q 009224 507 --------GTPCVQFF-KNKEMIRTVPG-----VKMKKEYREFIEANK 540 (540)
Q Consensus 507 --------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~i~~~l 540 (540)
..|+++++ ++|+++.++.| ..+.+++.+.|+++|
T Consensus 124 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 124 GEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred cccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 25988888 68999988864 345678888888764
No 408
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.49 E-value=2.3e-07 Score=92.48 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=74.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++|+.+. +. + ...++.+.+.+.+++.|++++
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l---------------~---~~~~~~~~l~~~l~~~gV~i~ 201 (367)
T 1xhc_A 143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM---FL---------------G---LDEELSNMIKDMLEETGVKFF 201 (367)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC---CT---------------T---CCHHHHHHHHHHHHHTTEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCe---ec---------------c---CCHHHHHHHHHHHHHCCCEEE
Confidence 37899999999999999999999999999997553 11 1 125677888899999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +++.++ .+.+.+. +++ +.+|.||+|+|..|+.
T Consensus 202 ~~~~v~~i~--~~~v~~~-~g~-i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 202 LNSELLEAN--EEGVLTN-SGF-IEGKVKICAIGIVPNV 236 (367)
T ss_dssp CSCCEEEEC--SSEEEET-TEE-EECSCEEEECCEEECC
T ss_pred cCCEEEEEE--eeEEEEC-CCE-EEcCEEEECcCCCcCH
Confidence 88 788776 2334443 445 9999999999988765
No 409
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=98.49 E-value=2.7e-07 Score=95.59 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=79.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. + ....++.+.+.+.+++.|++++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-------~l--------~-----~~~~~~~~~l~~~l~~~gV~i~ 244 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-------LM--------Q-----GADRDLVKVWQKQNEYRFDNIM 244 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS-------SS--------T-----TSCHHHHHHHHHHHGGGEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc-------cc--------c-----ccCHHHHHHHHHHHHhcCCEEE
Confidence 57999999999999999999999999999997554 11 1 1235677888888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-C----CeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-G----ERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~----~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.+++.+.+.. + +..+.+|.||+|+|.+|+..
T Consensus 245 ~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~ 289 (482)
T 1ojt_A 245 VNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289 (482)
T ss_dssp CSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGG
T ss_pred ECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCC
Confidence 98 8888887766555543 3 56789999999999988653
No 410
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=98.48 E-value=6.8e-07 Score=77.93 Aligned_cols=86 Identities=9% Similarity=0.072 Sum_probs=67.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|+.+. +.++++.|++.
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 119 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI 119 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcc
Confidence 4679999999 599999999999999999988 678888887752 23466667776
Q ss_pred ---c--ccEEEEE-eCCeEEEEeeCC-----CCHHHHHHHHHh
Q 009224 507 ---G--TPCVQFF-KNKEMIRTVPGV-----KMKKEYREFIEA 538 (540)
Q Consensus 507 ---~--~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~i~~ 538 (540)
+ .|+++++ ++|+++..+.|. .+.+++.+.|++
T Consensus 120 ~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred ccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 3 3888888 789999888764 234678877765
No 411
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=98.48 E-value=3.5e-07 Score=70.80 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=56.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc-----CCCcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA-----GIMGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-----~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
.++.|+.+|||+|++.+..+++. ++.|..+|++++++..+.+ +.+.+|++++ .||+. +.| .+.+
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~---l~~-~~~~ 73 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTAN------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGST---LTN-PSAD 73 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCE---EES-CCHH
T ss_pred cEEEEcCCCCHhHHHHHHHHHhc------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEE---EeC-CCHH
Confidence 36779999999999999988773 6888999999998765443 6788998644 67764 334 4777
Q ss_pred HHHHHHHhh
Q 009224 531 EYREFIEAN 539 (540)
Q Consensus 531 ~~~~~i~~~ 539 (540)
+|.++|+++
T Consensus 74 el~~~L~el 82 (92)
T 2lqo_A 74 EVKAKLVKI 82 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 899888865
No 412
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=98.48 E-value=7.6e-07 Score=92.43 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=80.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++. +++
T Consensus 173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~l------------~-----~~d~~~~~~l~~~l~~~-V~i 231 (492)
T 3ic9_A 173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS---VA------------N-----LQDEEMKRYAEKTFNEE-FYF 231 (492)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC---CT------------T-----CCCHHHHHHHHHHHHTT-SEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc---cc------------c-----cCCHHHHHHHHHHHhhC-cEE
Confidence 457999999999999999999999999999997554 11 0 12346777788888877 999
Q ss_pred EEe-eEEEEEeeCCcEEEEE---CC--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+...
T Consensus 232 ~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 232 DAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK 278 (492)
T ss_dssp ETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred EECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence 987 7888888777777664 45 67999999999999887653
No 413
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=98.48 E-value=9.4e-07 Score=90.10 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=78.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + .....++.+.+.+.+++.|+++
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~---~l---------------~-~~~~~~~~~~l~~~l~~~GV~i 208 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR---VL---------------E-RVTAPPVSAFYEHLHREAGVDI 208 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TT---------------T-TTSCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc---cc---------------c-chhhHHHHHHHHHHHHhCCeEE
Confidence 357899999999999999999999999999997543 10 0 0123567778888899999999
Q ss_pred EEe-eEEEEEe--eCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDV--KSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~--~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ +++.++. +++.+ .+.. ++..+.+|.||+|+|.+|+.
T Consensus 209 ~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~ 252 (431)
T 1q1r_A 209 RTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC 252 (431)
T ss_dssp ECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred EeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCc
Confidence 998 8888886 44443 4444 66789999999999988754
No 414
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=98.48 E-value=9.6e-07 Score=89.27 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+. +. ......++.+.+.+.+++.|++++
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~~----------------~~~~~~~~~~~l~~~l~~~GV~i~ 202 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPR---VM----------------ARVVTPEISSYFHDRHSGAGIRMH 202 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TT----------------TTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCc---ch----------------hhccCHHHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999999999997553 10 011235778888899999999999
Q ss_pred Ee-eEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ .|..+..+++.+ .+.. +++.+.+|.||+|+|..|+.
T Consensus 203 ~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 203 YGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp CSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred ECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence 88 888888766543 3444 66789999999999988764
No 415
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.47 E-value=2.1e-08 Score=104.29 Aligned_cols=146 Identities=13% Similarity=0.051 Sum_probs=92.9
Q ss_pred EecEEEEccCCCCCCCCCCCccc---ccCCCeeeeeec---------CCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC
Q 009224 197 KCHSIVFATGATAKRLNLPREDE---FWSRGISACAIC---------DGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR 264 (540)
Q Consensus 197 ~~d~lviAtG~~~~~~~ipg~~~---~~~~~~~~~~~~---------~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~ 264 (540)
.||.+++++|++|..+++++.+. +........... ..........+|+|||||++|+.+|..|++.|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~ 116 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA 116 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence 46889999999987665544221 111111110000 000112346799999999999999999999999
Q ss_pred eEEEEEecccccc--------------------------------------cHHHHHHHhcCCCeEEEeCceEEEEeeCC
Q 009224 265 HVHLLVRREQLRA--------------------------------------SRAMQDRVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 265 ~v~li~~~~~~~~--------------------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
+|+++++.+.+.. ....+.+.+++.|+++++++.+.++..++
T Consensus 117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~ 196 (497)
T 2bry_A 117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPP 196 (497)
T ss_dssp EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCC
T ss_pred eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEec
Confidence 9999998764320 01122333455799999999999998642
Q ss_pred -CCceeeEEEEEccCCceEEEEccEEEEecccccCcc
Q 009224 307 -KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ 342 (540)
Q Consensus 307 -~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 342 (540)
++....+.+.+..+|...++.+|.||+|+|..+...
T Consensus 197 ~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 197 RKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp STTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred CCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 222334554321123224689999999999987653
No 416
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=98.47 E-value=6.2e-07 Score=80.07 Aligned_cols=88 Identities=8% Similarity=-0.012 Sum_probs=68.7
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC-------------------------HHHHHHcC
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED-------------------------PEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~-------------------------~~~~~~~~ 504 (540)
.+++++++||+ .||++|....|.|+++.+++. .++.++.|..+.. .++++.|+
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg 108 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 108 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence 36799999995 999999999999999999886 3688888887531 23556677
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
+. ..|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l 154 (186)
T 1n8j_A 109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 154 (186)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 76 36988888 6899998887653 577788887764
No 417
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=98.47 E-value=5.3e-07 Score=93.17 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=79.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+|+.+. + . + ....++.+.+.+.+++.|+++
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~----l--------~-----~~~~~~~~~l~~~l~~~gv~i 235 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE---I----V--------P-----TMDAEIRKQFQRSLEKQGMKF 235 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS---S----S--------T-----TSCHHHHHHHHHHHHHSSCCE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc---c----c--------c-----cccHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999999999997553 1 1 1 123567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE----CC--eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS----GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~----~~--~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 236 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 282 (470)
T 1dxl_A 236 KLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS 282 (470)
T ss_dssp ECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCT
T ss_pred EeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCC
Confidence 987 8888887665565543 23 6799999999999988654
No 418
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=98.46 E-value=8.8e-07 Score=91.90 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=80.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..++++|||||+.|+.+|..|++. |.+|+++++.+. +. +. ...++.+.+.+.+++.|
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~G 245 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM-------IL--------RG-----FDSELRKQLTEQLRANG 245 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS-------SS--------TT-----SCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC-------cc--------cc-----cCHHHHHHHHHHHHhCC
Confidence 357899999999999999999999 999999997553 11 11 13567788889999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ +|+.++.+++ .+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 246 V~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 291 (490)
T 1fec_A 246 INVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQ 291 (490)
T ss_dssp EEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred CEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCcc
Confidence 999998 8888887653 356655 556899999999999988764
No 419
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=98.46 E-value=1.1e-06 Score=91.21 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=79.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..++++|||||+.|+.+|..|++. |.+|+|+++.+. +. +. ...++.+.+.+.+++.|
T Consensus 190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~G 249 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL-------IL--------RG-----FDETIREEVTKQLTANG 249 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-------SC--------TT-----SCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc-------cc--------cc-----cCHHHHHHHHHHHHhCC
Confidence 347899999999999999999999 999999997543 11 11 23467788888999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ +|..++.+++ .+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 250 V~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 250 IEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp CEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred CEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence 999998 8888887653 355554 566899999999999887653
No 420
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=98.45 E-value=1.2e-06 Score=91.76 Aligned_cols=98 Identities=11% Similarity=0.195 Sum_probs=79.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
++++|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|++++.
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~---~l------------~-----~~~~~~~~~l~~~l~~~GV~i~~ 274 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP---LK------------L-----IKDNETRAYVLDRMKEQGMEIIS 274 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT---TT------------T-----CCSHHHHHHHHHHHHHTTCEEES
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc---cc------------c-----cccHHHHHHHHHHHHhCCcEEEE
Confidence 7899999999999999999999999999997543 10 1 12357788888999999999998
Q ss_pred e-eEEEEEeeCCc----EEEEE-CCe-EEEecEEEEccCCCCCCC
Q 009224 175 E-DVEFIDVKSNP----FTVKS-GER-KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 175 ~-~v~~i~~~~~~----~~v~~-~~~-~~~~d~lviAtG~~~~~~ 212 (540)
+ +|+.++.+++. +.+.. +++ .+.+|.||+|+|.+|+..
T Consensus 275 ~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~ 319 (523)
T 1mo9_A 275 GSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA 319 (523)
T ss_dssp SCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred CCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence 8 88888875554 56665 444 799999999999988653
No 421
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=98.45 E-value=1.2e-06 Score=92.94 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=76.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeeccC---------cc----------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTTT---------EV---------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~~---------~~---------------- 142 (540)
..+||+|||||+||++||+.|++.|++|+|+||....+ ..||...... ..
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v 96 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI 96 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 34799999999999999999999999999999965321 0122111000 00
Q ss_pred ----------------ccC---------------CCCC---------------CCCChHHHHHHHHHHHHHhCCEEEEe-
Q 009224 143 ----------------ENF---------------PGFP---------------DGITGPDLMDRMRRQAERWGAELHQE- 175 (540)
Q Consensus 143 ----------------~~~---------------~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~- 175 (540)
... .+.. ....+..+...+.+.+.+.|++++.+
T Consensus 97 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~~~ 176 (621)
T 2h88_A 97 HYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEY 176 (621)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEETE
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEEEce
Confidence 000 0000 00123467777778888889999987
Q ss_pred eEEEEEeeCCc---EEEEE--CCe--EEEecEEEEccCCCC
Q 009224 176 DVEFIDVKSNP---FTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 176 ~v~~i~~~~~~---~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
.|+.+..+++. +.+.. ++. .+.++.||+|||...
T Consensus 177 ~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 177 FALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred EEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 78887765543 33332 343 689999999999854
No 422
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=98.45 E-value=7.6e-07 Score=81.19 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC----------------------------HHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED----------------------------PEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~ 501 (540)
.+++++++|| +.||++|....|.|+++.+++.+ ++.++.|.+|.. .++++
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 126 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 126 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence 3679999999 99999999999999999999853 688888877521 24567
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++....|. .+.+++.+.|+++
T Consensus 127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l 175 (211)
T 2pn8_A 127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 175 (211)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78884 68988888 789998887664 3567788777653
No 423
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=98.45 E-value=7e-07 Score=78.44 Aligned_cols=87 Identities=14% Similarity=0.210 Sum_probs=67.9
Q ss_pred CCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEECcC--C-----------------------------H
Q 009224 453 PRLICVLYTSPTCG-PCRTLKPILGKVIDEFD---ENVHFVEIDIEE--D-----------------------------P 497 (540)
Q Consensus 453 ~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~--~-----------------------------~ 497 (540)
+++++++||+.||+ .|....+.++++.+++. .++.++.|.++. . .
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 68999999999998 69999999999999985 468888887651 1 1
Q ss_pred HHHHHcCC---------CcccEEEEE-eCCeEEEEeeCC-CCHHHHHHHHHhh
Q 009224 498 EIAEAAGI---------MGTPCVQFF-KNKEMIRTVPGV-KMKKEYREFIEAN 539 (540)
Q Consensus 498 ~~~~~~~i---------~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~i~~~ 539 (540)
++++.|++ ...|+++++ ++|+++..+.|. .+.+++.+.|++.
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~ 160 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA 160 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 34555453 345777777 889999888886 6788899988875
No 424
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=98.44 E-value=1.7e-07 Score=81.19 Aligned_cols=88 Identities=9% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCC--
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIM-- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~-- 506 (540)
.++++++.|| +.||++|....|.++++.+++.+ ++.++.|+.+. +.++++.|++.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~ 108 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE 108 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence 4678899998 99999999999999998888864 68888887753 23566777763
Q ss_pred ---------cccEEEEE-eCCeEEEEeeC-----CCCHHHHHHHHHhh
Q 009224 507 ---------GTPCVQFF-KNKEMIRTVPG-----VKMKKEYREFIEAN 539 (540)
Q Consensus 507 ---------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~i~~~ 539 (540)
..|+++++ ++|+++..+.+ ..+.+++.+.|+++
T Consensus 109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 45766666 78988876644 34567888888764
No 425
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=98.44 E-value=1.2e-06 Score=90.64 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=80.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.++++|||+|+.|+.+|..|++. |.+|+++++.+. + . + .....++.+.+.+.+++.|+++
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~---~----l--------~----~~~~~~~~~~l~~~l~~~GV~i 219 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQ---I----M--------P----GFTSKSLSQMLRHDLEKNDVVV 219 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSS---S----S--------T----TTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCc---c----c--------c----cccCHHHHHHHHHHHHhcCCEE
Confidence 57899999999999999999999 999999997543 1 1 1 0123577888888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ +|+.++.+++.+.+.. +++.+.+|.||+|+|..|+.
T Consensus 220 ~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 260 (472)
T 3iwa_A 220 HTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNT 260 (472)
T ss_dssp ECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECC
T ss_pred EeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCH
Confidence 998 8999987666665543 66789999999999988764
No 426
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=98.44 E-value=1.3e-06 Score=93.79 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHHH-----cCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR-----ANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~-----~g~~v~lie~~~~ 128 (540)
.+||+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 5799999999999999999999 9999999998643
No 427
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=98.44 E-value=3.6e-07 Score=77.80 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=62.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-------------------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------------------------------------- 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------------------------------------- 494 (540)
..+..++.|+.++||+|+++.+.++++ ++++++..+..
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~ 87 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVG 87 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence 357899999999999999999998764 35666655431
Q ss_pred ---------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 ---------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 ---------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++ .||+ .+.|..+.++|.++|++.
T Consensus 88 ~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~ 137 (147)
T 3gv1_A 88 GSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKN 137 (147)
T ss_dssp CCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHH
Confidence 1235678899999999988 7887 477999999999999875
No 428
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=98.43 E-value=8.9e-07 Score=93.94 Aligned_cols=116 Identities=23% Similarity=0.312 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCC-----CCcceeeccC----------------c---------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGG-----VPGGQLMTTT----------------E--------- 141 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~-----~~gg~~~~~~----------------~--------- 141 (540)
.+||+|||||+||++||+.|++.| ++|+|+||....+ ..||...... .
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 84 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD 84 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 479999999999999999999999 9999999965311 1122110000 0
Q ss_pred -------------------cc----------cCCCCCC-------CCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEee
Q 009224 142 -------------------VE----------NFPGFPD-------GITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVK 183 (540)
Q Consensus 142 -------------------~~----------~~~~~~~-------~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~ 183 (540)
+. .+.+... ..++..+...+.+.+.+.+ ++++.+ .|+.+..+
T Consensus 85 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~ 164 (602)
T 1kf6_A 85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD 164 (602)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe
Confidence 00 0000000 0113567777778787788 999887 78888776
Q ss_pred CCc---EEEEE--CCe--EEEecEEEEccCCCC
Q 009224 184 SNP---FTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 184 ~~~---~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
++. +.+.. ++. .+.++.||+|||...
T Consensus 165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp TTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence 653 32322 454 689999999999853
No 429
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=98.43 E-value=1.9e-06 Score=89.13 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|+++
T Consensus 179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~~~~~~~~l~~~l~~~Gv~v 238 (476)
T 3lad_A 179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-------FL--------P-----AVDEQVAKEAQKILTKQGLKI 238 (476)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-------SS--------T-----TSCHHHHHHHHHHHHHTTEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-------cC--------c-----ccCHHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999999999997543 11 1 123567888888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +++.++.+++.+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 239 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 239 LLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp EETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred EECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence 988 8888887777666554 22 5789999999999887654
No 430
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=98.43 E-value=1.4e-06 Score=92.30 Aligned_cols=98 Identities=12% Similarity=0.218 Sum_probs=78.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|++++
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~~~~~~~~l~~~l~~~GV~i~ 210 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ-------VM--------T-----PVDREMAGFAHQAIRDQGVDLR 210 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-------SC--------T-----TSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc-------cc--------h-----hcCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999997543 11 1 1235677788888999999999
Q ss_pred Ee-eEEEEEee-------------------CCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVK-------------------SNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~-------------------~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ ++..++.. ++.+.+.. +++.+.+|.||+|+|..|..
T Consensus 211 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 269 (565)
T 3ntd_A 211 LGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET 269 (565)
T ss_dssp ETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred eCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence 87 78888763 44555544 56789999999999988764
No 431
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=98.43 E-value=1.7e-06 Score=89.64 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=82.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||+|+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+++.|+++
T Consensus 190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~Gv~i 249 (484)
T 3o0h_A 190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL---I----L--------RN-----FDYDLRQLLNDAMVAKGISI 249 (484)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHHTCEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 457999999999999999999999999999997543 1 1 11 12567788888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ +|+.++.+++.+.+.. ++..+.+|.||+|+|..|....
T Consensus 250 ~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~ 292 (484)
T 3o0h_A 250 IYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTG 292 (484)
T ss_dssp ESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred EeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence 986 8999988877777766 5568999999999998876543
No 432
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=98.42 E-value=8.4e-07 Score=77.51 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|+.+. +.++++.|++..
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 120 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI 120 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCcee
Confidence 4678999999 899999999999999999998 678888887642 345777788854
Q ss_pred ---------ccEEEEE-eCCeEEEEeeC--CCCHHHHHHHHH
Q 009224 508 ---------TPCVQFF-KNKEMIRTVPG--VKMKKEYREFIE 537 (540)
Q Consensus 508 ---------~Pt~~~~-~~g~~~~~~~g--~~~~~~~~~~i~ 537 (540)
.|+++++ ++|+++..+.| .....++.+.++
T Consensus 121 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~ 162 (165)
T 1q98_A 121 QTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALA 162 (165)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred cccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHH
Confidence 4988888 78999988865 223334555444
No 433
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=98.41 E-value=1.9e-06 Score=89.24 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=79.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|+++
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~d~~~~~~~~~~l~~~gv~i 245 (478)
T 3dk9_A 186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK-------VL--------R-----SFDSMISTNCTEELENAGVEV 245 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------T-----TSCHHHHHHHHHHHHHTTCEE
T ss_pred cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc-------cc--------c-----ccCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 11 0 123567788888999999999
Q ss_pred EEe-eEEEEEeeCCc--EEEEECC--------eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVKSGE--------RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~~~~--------~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..++..++. +.+.... ..+.+|.||+|+|..|+..
T Consensus 246 ~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp ETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred EeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence 987 78888876554 4554431 6789999999999887664
No 434
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=98.41 E-value=1.8e-06 Score=91.33 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeecc-C-----------------c-c-------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTT-T-----------------E-V------- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~-~-----------------~-~------- 142 (540)
.+||+|||||+||++||+.|++.|++|+|+||....+ ..||..... . . .
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 86 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4799999999999999999999999999999965421 011211100 0 0 0
Q ss_pred ---------------ccC---------------CCCC-------C-------CCChHHHHHHHHHHHHHhCCEEEEe-eE
Q 009224 143 ---------------ENF---------------PGFP-------D-------GITGPDLMDRMRRQAERWGAELHQE-DV 177 (540)
Q Consensus 143 ---------------~~~---------------~~~~-------~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v 177 (540)
... ++.. . ...+..+...+.+.+++.|++++.+ .|
T Consensus 87 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v 166 (588)
T 2wdq_A 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred HHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCcEE
Confidence 000 0000 0 0113567778888888899999987 78
Q ss_pred EEEEee-CCc---EEEEE--CCe--EEEecEEEEccCCCC
Q 009224 178 EFIDVK-SNP---FTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 178 ~~i~~~-~~~---~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
+.+..+ ++. +.+.. ++. .+.++.||+|||...
T Consensus 167 ~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 167 LDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred EEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 888764 443 23332 333 689999999999853
No 435
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.40 E-value=9.7e-08 Score=95.87 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccC--------------c-cc-cC----------C
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTT--------------E-VE-NF----------P 146 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~--------------~-~~-~~----------~ 146 (540)
.||+|||||++|+++|..|++. |++|+|+|+.+.....|..+.... . .. .. .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 3799999999999999999999 999999999765311122111100 0 00 00 0
Q ss_pred --------CCC-CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 147 --------GFP-DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 147 --------~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
+.+ ......++.+.+.+.+++.|++++.+ +|++++.. ..+++|.||.|+|....
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~----------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL----------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC----------CGGGCSEEEECCGGGGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc----------ccccCCEEEECCCCCch
Confidence 100 01345678888888888889999887 66655421 12579999999997543
No 436
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=98.40 E-value=5.4e-07 Score=70.19 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=52.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----CC----HHHHHHcCCCcccEEEEEeCCeEEEEeeCCC
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----ED----PEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK 527 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 527 (540)
+..|+++||++|+++.+.++++ ++.|..+|++ ++ +++.+.+++.++|++++ +|+. +.|+
T Consensus 14 v~ly~~~~Cp~C~~~~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~- 81 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLEFLKRE------GVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGY- 81 (92)
T ss_dssp SEEEECTTCHHHHHHHHHHHHH------TCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESC-
T ss_pred EEEEECCCChHHHHHHHHHHHc------CCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCC-
Confidence 5668999999999999999876 2445566766 33 56677889999999876 7753 4465
Q ss_pred CHHHHHHHHH
Q 009224 528 MKKEYREFIE 537 (540)
Q Consensus 528 ~~~~~~~~i~ 537 (540)
+.++|.++|+
T Consensus 82 ~~~~l~~~l~ 91 (92)
T 3ic4_A 82 NEEKLKELIR 91 (92)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHhc
Confidence 8888999886
No 437
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=98.39 E-value=9.4e-07 Score=93.98 Aligned_cols=98 Identities=14% Similarity=0.238 Sum_probs=79.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. +. ...++.+.+.+.+++.|+++
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~~-----~~~~~~~~l~~~l~~~GV~i 245 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ-------VM--------PP-----IDYEMAAYVHEHMKNHDVEL 245 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc-------cc--------cc-----CCHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999999999997543 11 11 23567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .|..++.+++.+.+. ++..+.+|.||+|+|..|..
T Consensus 246 ~~~~~v~~i~~~~~~v~~~-~g~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 246 VFEDGVDALEENGAVVRLK-SGSVIQTDMLILAIGVQPES 284 (588)
T ss_dssp ECSCCEEEEEGGGTEEEET-TSCEEECSEEEECSCEEECC
T ss_pred EECCeEEEEecCCCEEEEC-CCCEEEcCEEEEccCCCCCh
Confidence 987 888888766655554 66789999999999988764
No 438
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=98.38 E-value=1.5e-06 Score=68.62 Aligned_cols=61 Identities=30% Similarity=0.392 Sum_probs=48.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc-----CCCcccEEEEEeCCeEEE
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA-----GIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-----~i~~~Pt~~~~~~g~~~~ 521 (540)
...-++.|+.+|||+|+++++.++++ ++.|..+|++++++..+.+ +..++|++ |.+|+.+.
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRK------GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHH------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 34456779999999999999999886 4667889999887665544 89999986 56887543
No 439
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=98.37 E-value=9.6e-07 Score=92.52 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=32.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||||+||++||+.|++ |++|+|+||...
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 35799999999999999999999 999999999765
No 440
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=98.37 E-value=3.6e-06 Score=77.64 Aligned_cols=99 Identities=10% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCC--cccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIM--GTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~--~~Pt~~~~~~g 517 (540)
.+++.++........++.|..+||..|..+.+.++++++++.+++.|+.+|++ ++..+++.|++. .+|++.++...
T Consensus 120 ~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~ 199 (227)
T 4f9z_D 120 PVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTL 199 (227)
T ss_dssp HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESS
T ss_pred cccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECC
Confidence 45556665555556667788899999999999999999999888999999996 466788999998 79999999643
Q ss_pred -eEEEEe-eCCCCHHHHHHHHHhhC
Q 009224 518 -EMIRTV-PGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 -~~~~~~-~g~~~~~~~~~~i~~~l 540 (540)
.....+ .+..+.+.|.+|+++++
T Consensus 200 ~~~ky~~~~~~~t~~~i~~Fv~~~~ 224 (227)
T 4f9z_D 200 DDEWDTLPTAEVSVEHVQNFCDGFL 224 (227)
T ss_dssp SCCEEEETTCCCCHHHHHHHHHHHH
T ss_pred CCccccCCcCCCCHHHHHHHHHHHh
Confidence 223333 36789999999998763
No 441
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=98.37 E-value=2e-06 Score=89.23 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=78.2
Q ss_pred cccEEEECCCHHHHHHHHHHHH----cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR----ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~----~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.++|+|||||+.|+.+|..|++ .|.+|+++++.+. +. ....+.++.+.+.+.+++.|
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~---~~----------------~~~l~~~~~~~~~~~l~~~G 240 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG---NM----------------GKILPEYLSNWTMEKVRREG 240 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS---TT----------------TTTSCHHHHHHHHHHHHTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc---cc----------------cccCCHHHHHHHHHHHHhcC
Confidence 5789999999999999999987 4789999986432 10 01122567778888899999
Q ss_pred CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ .|+.++.+++.+.+.. ++..+.+|.||+|+|..|+..
T Consensus 241 V~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~ 285 (493)
T 1m6i_A 241 VKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVE 285 (493)
T ss_dssp CEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred CEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHH
Confidence 999998 8888887666555554 667899999999999987653
No 442
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=98.37 E-value=9e-07 Score=90.36 Aligned_cols=96 Identities=14% Similarity=0.230 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..+++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-------ll--------~~-----~d~~~~~~~~~~l~~~gV~i~ 206 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK-------IN--------KL-----MDADMNQPILDELDKREIPYR 206 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC-------CS--------TT-----SCGGGGHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecc-------cc--------cc-----ccchhHHHHHHHhhccceEEE
Confidence 46899999999999999999999999999997543 11 11 124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|..++ ++.+.+. +++.+.+|.|++|+|..|+..
T Consensus 207 ~~~~v~~~~--~~~v~~~-~g~~~~~D~vl~a~G~~Pn~~ 243 (437)
T 4eqs_A 207 LNEEINAIN--GNEITFK-SGKVEHYDMIIEGVGTHPNSK 243 (437)
T ss_dssp ESCCEEEEE--TTEEEET-TSCEEECSEEEECCCEEESCG
T ss_pred eccEEEEec--CCeeeec-CCeEEeeeeEEEEeceecCcH
Confidence 88 677665 3344444 778899999999999887643
No 443
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=98.36 E-value=2.6e-06 Score=91.01 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=40.0
Q ss_pred CCCCEEeCCCccccCCCceEEccccCCC--------cchhhhhhhchHHHHHHHHHHHHh
Q 009224 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDH--------EWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 352 ~~g~i~vd~~~~~t~~~~iya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
..|+|.+|.+. ++.+||+||+|+|+.. .-.....++.-|+.|+.++++++.
T Consensus 371 t~GGi~vd~~~-~v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~ 429 (660)
T 2bs2_A 371 SMGGIRTDYRG-EAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA 429 (660)
T ss_dssp ECCEEECCTTS-BCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEECCCC-ceecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999988 7899999999998521 113456677889999999988875
No 444
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=98.35 E-value=1e-06 Score=77.05 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=65.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++|| +.||++|....|.++++.++ .++.++.|..+. +.++++.|++..
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 122 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVM 122 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEE
T ss_pred CCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcc
Confidence 3678899998 88999999999999998877 467888777652 235667778775
Q ss_pred ------ccEEEEE-eCCeEEEEeeC-----CCCHHHHHHHHHh
Q 009224 508 ------TPCVQFF-KNKEMIRTVPG-----VKMKKEYREFIEA 538 (540)
Q Consensus 508 ------~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~i~~ 538 (540)
.|+++++ ++|+++..+.+ ..+.+++.+.|++
T Consensus 123 ~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 123 EELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp TTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred ccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 8988888 78998887543 2455778777765
No 445
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=98.35 E-value=2.1e-06 Score=80.10 Aligned_cols=87 Identities=11% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCeEEEEEE-CCCChhhh-hhhHHHHHHHHHhC-CCe-EEEEEECcC----------------------CHHHHHHcCC
Q 009224 452 SPRLICVLYT-SPTCGPCR-TLKPILGKVIDEFD-ENV-HFVEIDIEE----------------------DPEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~-~~~~~~~~~~~~~~-~~~-~~~~vd~~~----------------------~~~~~~~~~i 505 (540)
.+++++++|| +.||++|. ...|.|+++++++. .++ .++.|+.+. +.++++.|++
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 111 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM 111 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence 4578999998 99999999 99999999999885 368 888888753 2246777887
Q ss_pred C-----------cccEEEEEeCCeEEEEeeCC---------CCHHHHHHHHHh
Q 009224 506 M-----------GTPCVQFFKNKEMIRTVPGV---------KMKKEYREFIEA 538 (540)
Q Consensus 506 ~-----------~~Pt~~~~~~g~~~~~~~g~---------~~~~~~~~~i~~ 538 (540)
. ..|+.+++++|+++..+.|. .+.+++.+.|+.
T Consensus 112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~ 164 (241)
T 1nm3_A 112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP 164 (241)
T ss_dssp EEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred eeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence 5 35855555999999888775 345666666653
No 446
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=98.35 E-value=2.1e-06 Score=79.86 Aligned_cols=87 Identities=11% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++|+||+ .||++|....|.|+++.+++.+ ++.++.|.+|. +.++++
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~ 155 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK 155 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence 46799999998 9999999999999999999964 68888888763 125677
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. .+|+++++ ++|+++.+..+. .+.+++.+.|++
T Consensus 156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~ 203 (240)
T 3qpm_A 156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQA 203 (240)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 68988888 789988876653 345677777664
No 447
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.34 E-value=4.2e-06 Score=88.30 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~ 66 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF 66 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 58999999999999999999999999999999764
No 448
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.34 E-value=1.4e-06 Score=89.34 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CceEEEcC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-LKPVVFEG 125 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~ 125 (540)
.+||+|||||++|+++|+.|+++| ++|+|+|+
T Consensus 23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 479999999999999999999999 99999999
No 449
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=98.34 E-value=2.1e-06 Score=88.10 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=77.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. + . +. ....++.+.+.+.+++. +++
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~----~~~~~~~~~l~~~l~~~-v~i 206 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER---V----L--------RR----SFDKEVTDILEEKLKKH-VNL 206 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T----T--------TT----TSCHHHHHHHHHHHTTT-SEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc---c----c--------hh----hcCHHHHHHHHHHHHhC-cEE
Confidence 346999999999999999999999999999997553 1 1 01 12356777888888888 999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .+..++.+++...+..++..+.+|.||+|+|..|+.
T Consensus 207 ~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~ 246 (449)
T 3kd9_A 207 RLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNI 246 (449)
T ss_dssp EESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECC
T ss_pred EeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCH
Confidence 887 788887655333345578899999999999988764
No 450
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=98.34 E-value=1.7e-06 Score=87.45 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+|+||||||+||++|..|+++|++|+|+||.+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3799999999999999999999999999999654
No 451
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=98.34 E-value=2.3e-07 Score=81.05 Aligned_cols=89 Identities=8% Similarity=0.091 Sum_probs=65.4
Q ss_pred hCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCC-
Q 009224 451 ESPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIM- 506 (540)
Q Consensus 451 ~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~- 506 (540)
..++++++.|| +.||++|....|.|+++.+++.+ ++.++.|+.+. +.++++.|++.
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~ 110 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH 110 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcc
Confidence 34667778887 99999999999999998888864 58888888753 23567778873
Q ss_pred ---------cccEEEEE-eCCeEEEEeeCC-----CCHHHHHHHHHhh
Q 009224 507 ---------GTPCVQFF-KNKEMIRTVPGV-----KMKKEYREFIEAN 539 (540)
Q Consensus 507 ---------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~i~~~ 539 (540)
..|+++++ ++|+++..+.+. .+.+++.+.++++
T Consensus 111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 158 (164)
T ss_dssp EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36776666 789888776543 3566777766654
No 452
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=98.34 E-value=1.4e-06 Score=77.33 Aligned_cols=86 Identities=9% Similarity=0.093 Sum_probs=61.1
Q ss_pred CCeEEEEEECCCChhhhh-hhHHHHHHHHHhCC-CeE-EEEEECcC-----------------------CHHHHHHcCCC
Q 009224 453 PRLICVLYTSPTCGPCRT-LKPILGKVIDEFDE-NVH-FVEIDIEE-----------------------DPEIAEAAGIM 506 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~-~~~~~~~~~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~i~ 506 (540)
+.++++.||+.|||+|+. ..|.|+++++++.+ ++. ++-|+.+. +.++++.|++.
T Consensus 57 k~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~ 136 (184)
T 3uma_A 57 KRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGME 136 (184)
T ss_dssp SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCE
T ss_pred CCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCc
Confidence 335566667999999999 79999999999853 577 88888753 22467778875
Q ss_pred -----------cccEEEEEeCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 507 -----------GTPCVQFFKNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 507 -----------~~Pt~~~~~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
..|+.+++++|+++....+. .+...+++.|++
T Consensus 137 ~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 137 IDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL 183 (184)
T ss_dssp EEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred eeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence 24656666999998887664 234455555554
No 453
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=98.33 E-value=2.7e-06 Score=87.60 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=80.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. +. +. ...++.+.+.+.+++.|+++
T Consensus 169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~-------~l--------~~-----~~~~~~~~l~~~l~~~Gv~i 228 (463)
T 4dna_A 169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE-------IL--------SR-----FDQDMRRGLHAAMEEKGIRI 228 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SS--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-------cc--------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 11 11 23577888889999999999
Q ss_pred EEe-eEEEEEeeCCc-EEEE-E-CCeEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP-FTVK-S-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~-~~v~-~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ .|..++.+++. +.+. . +++ +.+|.||+|+|..|+...
T Consensus 229 ~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 229 LCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNG 272 (463)
T ss_dssp ECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTT
T ss_pred ECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCC
Confidence 997 88888876544 5666 4 455 999999999999876543
No 454
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=98.31 E-value=3e-06 Score=74.75 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEECcC-----------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEE----------------------------------- 495 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~----------------------------------- 495 (540)
.++.++.|+..|||+|+.+.+.+.++.+++ .++++|+..+..-
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~ 106 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 106 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcCh
Confidence 567899999999999999999999999988 6678877765521
Q ss_pred -------------------------------CHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 496 -------------------------------DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 496 -------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+.+++++++|+++||+++ ||+ .+.|..+.++|.+.|++
T Consensus 107 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~---~~~G~~~~~~l~~~i~~ 175 (175)
T 1z6m_A 107 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIEK 175 (175)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCE---EccCCCCHHHHHHHhcC
Confidence 011345679999999655 887 35799999999988864
No 455
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=98.30 E-value=9e-07 Score=68.41 Aligned_cols=57 Identities=26% Similarity=0.472 Sum_probs=45.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHc-CCCcccEEEEEeCCeEE
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAA-GIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~-~i~~~Pt~~~~~~g~~~ 520 (540)
.++.|+++||++|+.+.+.+++. ++.|..+|++ ..+++.+.+ ++.++|+++ .+|+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i 66 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKK------GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV 66 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHH------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred eEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence 36678999999999999999875 3567788887 556778888 999999974 588643
No 456
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=98.30 E-value=1.6e-06 Score=78.07 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~ 493 (540)
.++.++.||..|||+|+.+.+.+.++.++++.++.|..+.+
T Consensus 22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 62 (195)
T 2znm_A 22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV 62 (195)
T ss_dssp SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence 57889999999999999999999999999987788877765
No 457
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=98.29 E-value=2e-06 Score=68.72 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCeEEEEEEC-----CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHH----HHHcCCCcccEEEEE
Q 009224 444 ALRKLYHESPRLICVLYTS-----PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI----AEAAGIMGTPCVQFF 514 (540)
Q Consensus 444 ~~~~~~~~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~ 514 (540)
.+.+++ +.++ +++ |+. +|||+|+.+++.++++ ++.|..+|+++++++ .+.+++.++|++ |
T Consensus 9 ~~~~~i-~~~~-vvv-f~~g~~~~~~C~~C~~~~~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~ 77 (105)
T 2yan_A 9 RLKVLT-NKAS-VML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--Y 77 (105)
T ss_dssp HHHHHH-TSSS-EEE-EESBCSSSBCTTHHHHHHHHHHHH------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--E
T ss_pred HHHHHh-ccCC-EEE-EEecCCCCCCCccHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--E
Confidence 344444 3333 444 776 9999999999999886 467889999988764 455789999996 5
Q ss_pred eCCeEEE
Q 009224 515 KNKEMIR 521 (540)
Q Consensus 515 ~~g~~~~ 521 (540)
.+|+.+.
T Consensus 78 i~g~~ig 84 (105)
T 2yan_A 78 VKGELVG 84 (105)
T ss_dssp ETTEEEE
T ss_pred ECCEEEe
Confidence 6887654
No 458
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=98.28 E-value=9e-07 Score=86.46 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
..++....+|+|.+|+.++. .....|..+|..|+.++++.+.++..
T Consensus 321 ~tle~k~~~~Lf~AGqi~G~--~Gy~eAaa~Gl~AG~naa~~~~g~~p 366 (443)
T 3g5s_A 321 ETLEFREAEGLYAAGVLAGV--EGYLESAATGFLAGLNAARKALGLPP 366 (443)
T ss_dssp TTSEETTEEEEEECGGGGTB--CSHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhceecCCCCEEECcccccc--HHHHHHHHhHHHHHHHHHHHhcCCCC
Confidence 45533468999999999996 56679999999999999999988765
No 459
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=98.28 E-value=2.7e-06 Score=76.81 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=64.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|..|. +.++++.|++.
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~ 155 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAI 155 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEE
T ss_pred CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCcee
Confidence 4678999999 789999999999999999999 678888887752 34567778775
Q ss_pred --------cccEEEEE-eCCeEEEEeeCC--CCHHHHHHHHHh
Q 009224 507 --------GTPCVQFF-KNKEMIRTVPGV--KMKKEYREFIEA 538 (540)
Q Consensus 507 --------~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~i~~ 538 (540)
..|+++++ ++|+++....+. ....++.+.++.
T Consensus 156 ~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~ 198 (200)
T 3zrd_A 156 TEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAA 198 (200)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHH
T ss_pred ecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHh
Confidence 36988888 789998876543 223334444443
No 460
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=98.28 E-value=2.1e-06 Score=77.04 Aligned_cols=43 Identities=16% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~ 494 (540)
..++.++.|+..|||+|+.+.|.++++.+++.+++.|..+++.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 3678999999999999999999999999999888888888763
No 461
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=98.27 E-value=1.1e-05 Score=66.37 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=74.3
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+..++.+.+ +.+++++|-|+.+||.+| .+.|.++++.+ +.+.|+..+ +++++++|++. .|++++|++..
T Consensus 26 i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~-~~~vvlfkkfd 96 (124)
T 2l4c_A 26 LTDVPAAMEFI-AATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT-GNTICLFRLVD 96 (124)
T ss_dssp CCSHHHHHHHH-HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC-SSCEEEEETTT
T ss_pred cCCHHHHHHHH-hcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC-CCeEEEEEcCC
Confidence 33455566665 457789999999999999 78899999999 679998765 58899999998 89999998863
Q ss_pred -EEEEeeC----CCCHHHHHHHHHhh
Q 009224 519 -MIRTVPG----VKMKKEYREFIEAN 539 (540)
Q Consensus 519 -~~~~~~g----~~~~~~~~~~i~~~ 539 (540)
....+.| ..+.+.|.+||...
T Consensus 97 e~~~~~~g~~~~~~~~~~L~~FI~~n 122 (124)
T 2l4c_A 97 NEQLNLEDEDIESIDATKLSRFIEIN 122 (124)
T ss_dssp TEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred CCceeecCcccCCCCHHHHHHHHHHh
Confidence 4456775 67999999999864
No 462
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=98.27 E-value=3e-06 Score=73.66 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCCeEEEEEE-CCCChhhh-hhhHHHHHHHHHhC-CCeE-EEEEECcC-----------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCR-TLKPILGKVIDEFD-ENVH-FVEIDIEE-----------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~-~~~~~~~~~~~~~~-~~~~-~~~vd~~~-----------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||++|. ...|.|+++.+++. .++. ++.|..+. +.++++.|+
T Consensus 34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG 113 (162)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence 4678999999 89999999 89999999998885 3577 77776642 235677788
Q ss_pred CC-----------cccEEEEEeCCeEEEEeeCC
Q 009224 505 IM-----------GTPCVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 505 i~-----------~~Pt~~~~~~g~~~~~~~g~ 526 (540)
+. ..|+.+++.+|+++....|.
T Consensus 114 v~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 114 LELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146 (162)
T ss_dssp CEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred cccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence 76 27987777899988877766
No 463
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=98.27 E-value=3.8e-06 Score=81.81 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=75.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+. + . ....+.+.+.+.+++.|+++
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~----~---------------~~~~~~~~l~~~l~~~gv~i 201 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG---F----R---------------AEKILIKRLMDKVENGNIIL 201 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS---C----C---------------CCHHHHHHHHHHHHTSSEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc---c----c---------------cCHHHHHHHHHhcccCCeEE
Confidence 457899999999999999999999999999997543 1 0 12355667777788899999
Q ss_pred EEe-eEEEEEeeCCc---EEEEE--C-C--eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP---FTVKS--G-E--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~---~~v~~--~-~--~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +++.++.+++. +.+.. + + ..+.+|.||+|+|..|...
T Consensus 202 ~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 250 (320)
T 1trb_A 202 HTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 250 (320)
T ss_dssp ECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCG
T ss_pred EcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChH
Confidence 987 88888876643 44442 1 3 5799999999999887653
No 464
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=98.26 E-value=4.8e-07 Score=94.29 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
|++|||||||++||+||..|++.|++|+|+|+.+. +||....
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~---~GG~~~t 42 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK---PGGRAYV 42 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----------CE
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC---CCCcEEE
Confidence 58999999999999999999999999999999988 8886543
No 465
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=98.24 E-value=3.2e-06 Score=79.12 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++|+|| +.||++|....+.|+++.+++.+ ++.++.|.+|. +.++++
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~ 169 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 169 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence 3578999999 99999999999999999999963 68888888763 125677
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. .+|+++|+ ++|+++....+. .+.+++.+.|++
T Consensus 170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a 217 (254)
T 3tjj_A 170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA 217 (254)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence 78875 57988888 789988876652 345677777664
No 466
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.24 E-value=3.6e-06 Score=78.01 Aligned_cols=153 Identities=15% Similarity=0.171 Sum_probs=103.4
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc-----------------cc------------ccHHHHHHHhcCC-C
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ-----------------LR------------ASRAMQDRVFNNP-N 290 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~-----------------~~------------~~~~~~~~~l~~~-g 290 (540)
..|+|||+|++|+++|..|++.|.+|+++++... +. .....+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 3699999999999999999999999999998721 00 1223344445665 9
Q ss_pred eEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--------------------c----c
Q 009224 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--------------------Q----G 346 (540)
Q Consensus 291 v~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--------------------~----~ 346 (540)
++++ +.++.++..++ +++..+.+ .+| .++.+|.||+|+|..++.... . .
T Consensus 84 v~i~-~~~v~~i~~~~-~~v~~v~~---~~g--~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~ 156 (232)
T 2cul_A 84 LHLF-QATATGLLLEG-NRVVGVRT---WEG--PPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRL 156 (232)
T ss_dssp EEEE-ECCEEEEEEET-TEEEEEEE---TTS--CCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHT
T ss_pred cEEE-EeEEEEEEEeC-CEEEEEEE---CCC--CEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhC
Confidence 9999 46899998754 33434443 223 468999999999995543311 1 1
Q ss_pred ceeccCCC--------C-------EEeCC------CccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 347 QVELDSSG--------Y-------VIVEE------GTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 347 ~~~~~~~g--------~-------i~vd~------~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
++.++... . ..... .+..|++|||||+|||+ . ......|+.+|+.+|.+|.+.|
T Consensus 157 g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~-~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 157 GFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-R-EGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-S-CCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-c-CccHHHHHHHHHHHHHHHHhhc
Confidence 12111110 0 01110 12237899999999999 5 4677888999999999998765
No 467
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=98.24 E-value=4.9e-06 Score=72.69 Aligned_cols=75 Identities=4% Similarity=-0.032 Sum_probs=57.0
Q ss_pred CCCeEEEEEE-CCCChhhhh-hhHHHHHHHHHhC-CCe-EEEEEECcC-----------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRT-LKPILGKVIDEFD-ENV-HFVEIDIEE-----------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~-~~~~~~~~~~~~~-~~~-~~~~vd~~~-----------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||++|.. ..|.|+++++++. .++ .++.|+.+. +.++++.|+
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g 109 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD 109 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence 4567788876 999999999 9999999998885 368 888887752 224667777
Q ss_pred CCcc-----------cEEEEEeCCeEEEEeeCC
Q 009224 505 IMGT-----------PCVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 505 i~~~-----------Pt~~~~~~g~~~~~~~g~ 526 (540)
+... |+.+++++|+++....+.
T Consensus 110 v~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~ 142 (167)
T 2wfc_A 110 MELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP 142 (167)
T ss_dssp CEECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred CccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence 7643 855555999998877664
No 468
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=98.23 E-value=3.2e-06 Score=75.07 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=66.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE------------------------------------- 495 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~------------------------------------- 495 (540)
.++.++.|+.-.||+|+.+.+.+.++.+++.+++.|..+...-
T Consensus 21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (184)
T 4dvc_A 21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR 100 (184)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999998777776655410
Q ss_pred --------------------------------------CHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHH
Q 009224 496 --------------------------------------DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 496 --------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
+.+++++++|+++|||++ ||+.+....+..+.+++.+.|+
T Consensus 101 ~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i~ 178 (184)
T 4dvc_A 101 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLVN 178 (184)
T ss_dssp CCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHHH
T ss_pred hccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHHH
Confidence 012345579999999665 8986655566788888998888
Q ss_pred hhC
Q 009224 538 ANK 540 (540)
Q Consensus 538 ~~l 540 (540)
.++
T Consensus 179 ~Ll 181 (184)
T 4dvc_A 179 YLL 181 (184)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 469
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=98.21 E-value=8.4e-07 Score=87.91 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=39.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CCCCCCcceeec
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQLMT 138 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~~~~~gg~~~~ 138 (540)
+...+||+|||||++||+||+.|++.|++|+|+|+. +. .||.+..
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~---vGGr~~t 86 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR---VGGRIKT 86 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC---CBTTCCE
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc---cCCceee
Confidence 345689999999999999999999999999999998 77 7776653
No 470
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=98.20 E-value=1.1e-05 Score=83.63 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=76.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++... . +. ...++.+.+.+.+++.|+++
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~Gv~i 244 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIV--------L--------RG-----FDQQMAELVAASMEERGIPF 244 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCS--------S--------TT-----SCHHHHHHHHHHHHHTTCCE
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--------C--------cc-----cCHHHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999999999986321 0 11 13577788889999999999
Q ss_pred EEe-eEEEEEeeCC-cEEEEE-CC-----eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSN-PFTVKS-GE-----RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~-~~~v~~-~~-----~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..++..++ .+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 245 ~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred EeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence 998 7888886544 344432 21 3789999999999887653
No 471
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=98.20 E-value=5.9e-06 Score=82.19 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=74.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC-CEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG-AEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~ 172 (540)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+. +.... ..+....+....+.+.+.+++.| +++
T Consensus 166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~-------~~~~~------~d~~~~~~~~~~~~l~~~l~~~g~v~~ 232 (369)
T 3d1c_A 166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG-------LNDPD------ADPSVRLSPYTRQRLGNVIKQGARIEM 232 (369)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----------------------CTTSCCHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC-------CCCCC------CCCCccCCHHHHHHHHHHHhhCCcEEE
Confidence 46899999999999999999999999999997543 11100 00111123456677777888886 999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEE-ecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVK-CHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~-~d~lviAtG~~~~~ 211 (540)
+.+ .+..++.+++.+.+.. ++..+. +|.+|+|||..|..
T Consensus 233 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~ 274 (369)
T 3d1c_A 233 NVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATK 274 (369)
T ss_dssp ECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred ecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCcc
Confidence 987 8888876666655544 455555 59999999998765
No 472
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=98.20 E-value=8.3e-07 Score=92.74 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=38.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceee
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~ 137 (540)
..+||+|||||++||+||+.|+++ |++|+|+|+.+. +||...
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~---~GG~~~ 51 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET---PGGLAS 51 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSS---CCGGGC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCC---CcCCee
Confidence 458999999999999999999985 999999999998 888764
No 473
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=98.20 E-value=3.5e-06 Score=63.76 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=50.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH----HHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE----IAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
++.|+++||++|+.+.+.+++. ++.|..+|++++++ +.+.+++.++|++ +.+|+.+ .|. ++|
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l--~~~g~~i---~g~---~~i 68 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHI---GGY---DDL 68 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEE---ESH---HHH
T ss_pred EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE---eCH---HHH
Confidence 5678999999999999999875 36677888887644 4567899999997 4588754 232 456
Q ss_pred HHHHHh
Q 009224 533 REFIEA 538 (540)
Q Consensus 533 ~~~i~~ 538 (540)
.+++++
T Consensus 69 ~~~~~~ 74 (82)
T 1fov_A 69 YALDAR 74 (82)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 666553
No 474
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=98.19 E-value=4.7e-06 Score=84.32 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=74.6
Q ss_pred CEEEEEeCCccHHHHHHHHHh---cCCeEEEEEecccccc----------------cHHHHHHHhcCCCeEEEeCceEEE
Q 009224 241 QVLAVVGGGDTATEEAIYLTK---FARHVHLLVRREQLRA----------------SRAMQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~---~g~~v~li~~~~~~~~----------------~~~~~~~~l~~~gv~~~~~~~v~~ 301 (540)
++|+|||+|..|+.+|..|++ .|.+|+++++.+.+.. ......+.+++.|++++.+ .+.+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 8999999998875421 1223445567789999987 8888
Q ss_pred EeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
+..+.+ .+.+.+ ..+...++.+|.+|+|+|.+|+...+
T Consensus 81 i~~~~~----~V~~~~-g~~~~~~~~~d~lViAtG~~~~~~~i 118 (409)
T 3h8l_A 81 IDAKSS----MVYYTK-PDGSMAEEEYDYVIVGIGAHLATELV 118 (409)
T ss_dssp EETTTT----EEEEEC-TTSCEEEEECSEEEECCCCEECGGGS
T ss_pred EeCCCC----EEEEcc-CCcccceeeCCEEEECCCCCcCccCC
Confidence 887654 355544 22334668999999999998876543
No 475
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=98.19 E-value=1.2e-05 Score=83.33 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=75.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++... . +. ...++.+.+.+.+++.|+++
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~gv~~ 242 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP--------L--------RG-----FDQQMSSLVTEHMESHGTQF 242 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS--------S--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc--------c--------cc-----CCHHHHHHHHHHHHHCCCEE
Confidence 346899999999999999999999999999996321 0 11 13577888889999999999
Q ss_pred EEe-eEEEEEee-CCcEEEEE----CCe--EEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVK-SNPFTVKS----GER--KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~-~~~~~v~~----~~~--~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..+... ++.+.+.. +++ .+.+|.||+|+|..|+..
T Consensus 243 ~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 243 LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred EeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence 988 77888763 33344432 144 478999999999887654
No 476
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=98.19 E-value=5.5e-06 Score=81.27 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=74.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|..|+.+|..|++.|.+|+++++.+. +. ...+..+.+.+.+++.|+++
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~-------~~---------------~~~~~~~~l~~~l~~~gv~v 208 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-------FR---------------AHEASVKELMKAHEEGRLEV 208 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS-------CC---------------SCHHHHHHHHHHHHTTSSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc-------cC---------------ccHHHHHHHHhccccCCeEE
Confidence 357899999999999999999999999999997543 10 01345666777788889999
Q ss_pred EEe-eEEEEEeeCC--cEEEEE--CC--eEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSN--PFTVKS--GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~--~~~v~~--~~--~~~~~d~lviAtG~~~~~ 211 (540)
+.+ ++..++.+++ .+.+.. ++ ..+.+|.||+|+|..|..
T Consensus 209 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 254 (335)
T 2zbw_A 209 LTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKL 254 (335)
T ss_dssp ETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEEC
T ss_pred ecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCc
Confidence 988 8888887544 344442 34 579999999999988764
No 477
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=98.19 E-value=3.8e-06 Score=89.74 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCccccCCCceEEccccCCCcc-hhhhhhhchHHHHHHHHHHHHhcC
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEW-RQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~-~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
... +|++||+||+|||+.... +.+..+..+|+.|+..+.+++...
T Consensus 446 ~~~-~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~ 491 (662)
T 3gyx_A 446 YNR-MTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDH 491 (662)
T ss_dssp CTT-BCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhC
Confidence 344 899999999999986322 336778889999999999999765
No 478
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=9.2e-06 Score=71.22 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=71.9
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCH---------------HHHH---HcCCCcc
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDP---------------EIAE---AAGIMGT 508 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~---------------~~~~---~~~i~~~ 508 (540)
.+..|+++|+++++||+.|..+.... +++.+-+..++.++..|++... +++. .|++.++
T Consensus 52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~ 131 (178)
T 2ec4_A 52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQF 131 (178)
T ss_dssp TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTC
T ss_pred hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCC
Confidence 56689999999999999999998665 5566666667889999998654 3444 3899999
Q ss_pred cEEEEE-eC---CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KN---KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~---g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|++.++ .+ .+++.++.|..+.++|.+.|.+.
T Consensus 132 P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~ 166 (178)
T 2ec4_A 132 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA 166 (178)
T ss_dssp SEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 999998 33 36789999999999998887653
No 479
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=98.17 E-value=1.7e-05 Score=82.72 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=73.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++... . +. ...++.+.+.+.+++.|+++
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~--------l--------~~-----~d~~~~~~~~~~l~~~GV~v 267 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL--------L--------RG-----FDQDMANKIGEHMEEHGIKF 267 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS--------S--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccc--------c--------cc-----CCHHHHHHHHHHHHHCCCEE
Confidence 346799999999999999999999999999996311 1 11 13577888888999999999
Q ss_pred EEe-eEEEEEeeC----CcEEEE--E-CC---eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKS----NPFTVK--S-GE---RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~----~~~~v~--~-~~---~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..+.... +.+.+. . ++ ..+.+|.||+|+|..|+...
T Consensus 268 ~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~ 319 (519)
T 3qfa_A 268 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRK 319 (519)
T ss_dssp EESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSS
T ss_pred EeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCC
Confidence 987 555555432 334443 2 33 35789999999999886543
No 480
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=98.17 E-value=5.8e-06 Score=64.18 Aligned_cols=57 Identities=30% Similarity=0.553 Sum_probs=44.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHH----HHHcCCCcccEEEEEeCCeEE
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI----AEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.++.|+.+||++|+.+.+.+++. ++.|..+|++++++. .+.+++.++|++ |.+|+.+
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i 67 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHV 67 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 36779999999999999998874 467888999887654 447899999974 5688754
No 481
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=98.16 E-value=6e-06 Score=85.01 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=69.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcc--eeecc---C-ccccCCCCC---------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGG--QLMTT---T-EVENFPGFP--------------- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg--~~~~~---~-~~~~~~~~~--------------- 149 (540)
..++|+|||||..|+.+|..|++. +.+|+++++....- +.. .+... . ....+..++
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~-p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALK-PADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTN 304 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCC-BCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGT
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCc-CccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccC
Confidence 467999999999999999999999 89999999865310 000 00000 0 000000000
Q ss_pred -CCCChHHHHHHHHHHHH------HhCCEEEEe-eEEEEEeeCCcEEEEE----CCe--EEEecEEEEccCCCCC
Q 009224 150 -DGITGPDLMDRMRRQAE------RWGAELHQE-DVEFIDVKSNPFTVKS----GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 150 -~~~~~~~~~~~~~~~~~------~~~v~~~~~-~v~~i~~~~~~~~v~~----~~~--~~~~d~lviAtG~~~~ 210 (540)
.... .++...+.+.+. +.+++++.+ +|+.+..+++.+.+.. +++ ++.+|.||+|||..|.
T Consensus 305 ~~~~~-~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 305 YSVVD-TDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ 378 (463)
T ss_dssp SSCBC-HHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred CCcCC-HHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence 0000 111111111111 158899887 7888888877776654 333 4899999999999877
No 482
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=98.16 E-value=1.1e-05 Score=72.21 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~ 493 (540)
.++.++.|+..|||+|..+.+.+.++.+++.+++.|..+..
T Consensus 25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 65 (193)
T 2rem_A 25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA 65 (193)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence 56789999999999999999999999999987788877665
No 483
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=98.15 E-value=2.9e-06 Score=74.53 Aligned_cols=75 Identities=12% Similarity=0.211 Sum_probs=54.9
Q ss_pred hCCCeEEEEEECCCChhhhhh-hHHHHHHHHHhC-CCeE-EEEEECcC-----------------------CHHHHHHcC
Q 009224 451 ESPRLICVLYTSPTCGPCRTL-KPILGKVIDEFD-ENVH-FVEIDIEE-----------------------DPEIAEAAG 504 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~-~~~~-~~~vd~~~-----------------------~~~~~~~~~ 504 (540)
+.++++++.||+.||++|... .|.|+++++++. .++. ++-|+.+. +.++++.|+
T Consensus 42 ~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg 121 (171)
T 2pwj_A 42 KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLE 121 (171)
T ss_dssp TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHT
T ss_pred CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhC
Confidence 334577888999999999998 999999998885 3577 88887752 124566667
Q ss_pred CCc-----------cc-EEEEEeCCeEEEEeeCC
Q 009224 505 IMG-----------TP-CVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 505 i~~-----------~P-t~~~~~~g~~~~~~~g~ 526 (540)
+.. .| ++++. +|+++..+.|.
T Consensus 122 v~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~ 154 (171)
T 2pwj_A 122 LTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEE 154 (171)
T ss_dssp CEEECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred CccccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence 642 34 55554 99999887775
No 484
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=98.15 E-value=8.7e-06 Score=71.35 Aligned_cols=88 Identities=11% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEECcC---CHHH----HHHcC----------------
Q 009224 452 SPRLICVLYTSPTCG-PCRTLKPILGKVIDEFD---ENVHFVEIDIEE---DPEI----AEAAG---------------- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~---~~~~----~~~~~---------------- 504 (540)
.+++++++||.+||+ .|....+.+.++.+.+. .++.++.|.+|. .++. +++|+
T Consensus 31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~ 110 (170)
T 4hde_A 31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLED 110 (170)
T ss_dssp TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHH
T ss_pred CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHH
Confidence 578999999999997 79999999988877763 368888887752 2221 11221
Q ss_pred --------------------CCcccEEEEE-eCCeEEEEeeCC--CCHHHHHHHHHhh
Q 009224 505 --------------------IMGTPCVQFF-KNKEMIRTVPGV--KMKKEYREFIEAN 539 (540)
Q Consensus 505 --------------------i~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~i~~~ 539 (540)
+...|+++++ ++|+++..+.|. .+.+++.+.|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~L 168 (170)
T 4hde_A 111 ITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 2224667777 889999988875 3457777777765
No 485
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=98.15 E-value=4.4e-06 Score=66.48 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=49.7
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----HHHH----HHcCCCcccEEEEEeCCeEEEEeeC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----PEIA----EAAGIMGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~----~~~~i~~~Pt~~~~~~g~~~~~~~g 525 (540)
..++.|+++|||+|+.+++.++++ ++.|-.+|++.. +++. +.+++.++|++++ .+|+ ..|
T Consensus 22 ~~v~ly~~~~Cp~C~~ak~~L~~~------~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~~~~----~ig 90 (103)
T 3nzn_A 22 GKVIMYGLSTCVWCKKTKKLLTDL------GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-NDEK----AIV 90 (103)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHH------TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-TTTE----EEE
T ss_pred CeEEEEcCCCCchHHHHHHHHHHc------CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-CCCE----EEE
Confidence 346679999999999999999876 344566777652 2333 3368999999765 3334 334
Q ss_pred CCCHHHHHHHHH
Q 009224 526 VKMKKEYREFIE 537 (540)
Q Consensus 526 ~~~~~~~~~~i~ 537 (540)
..+.++|.++|+
T Consensus 91 g~~~~~l~~~L~ 102 (103)
T 3nzn_A 91 GFKEKEIRESLG 102 (103)
T ss_dssp SCCHHHHHHHTT
T ss_pred cCCHHHHHHHhC
Confidence 457788888763
No 486
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=98.15 E-value=6.2e-06 Score=66.85 Aligned_cols=57 Identities=21% Similarity=0.494 Sum_probs=43.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----HH----HHHHcCCCcccEEEEEeCCeEEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----PE----IAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~----~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++.|+.+|||+|+++++.++++ ++.|..+|++.. ++ +.+.++..++|++ |.+|+.+.
T Consensus 21 v~vy~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig 85 (113)
T 3rhb_A 21 VVIYSKTWCSYCTEVKTLFKRL------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCGKHIG 85 (113)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETTEEEE
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 6669999999999999999874 355566777653 33 4455699999996 67897654
No 487
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=98.14 E-value=8.7e-06 Score=80.77 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=74.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+. + . . ..++.+.+.+..++.|+++
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~----~---------~------~~~~~~~l~~~~~~~gv~i 219 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE---F----Q---------G------HGKTAHEVERARANGTIDV 219 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS---C----S---------S------CSHHHHSSHHHHHHTSEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC---C----C---------C------CHHHHHHHHHHhhcCceEE
Confidence 357899999999999999999999999999997543 1 0 0 0234556667778889999
Q ss_pred EEe-eEEEEEeeCCc---EEEEE-CC--eEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP---FTVKS-GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~---~~v~~-~~--~~~~~d~lviAtG~~~~~ 211 (540)
+.+ ++..++.+++. +.+.. ++ ..+.+|.||+|+|..|..
T Consensus 220 ~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~ 265 (360)
T 3ab1_A 220 YLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNL 265 (360)
T ss_dssp ESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSC
T ss_pred EcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCH
Confidence 998 88888877553 44432 44 578999999999988764
No 488
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=98.13 E-value=5.1e-06 Score=81.46 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc----cc----------------cc------cHHHHHHHhcCCCeE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE----QL----------------RA------SRAMQDRVFNNPNIT 292 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~----~~----------------~~------~~~~~~~~l~~~gv~ 292 (540)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ .. ......+.+++.|++
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 100 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE 100 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence 45789999999999999999999999999999843 11 10 123334456677999
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL 343 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 343 (540)
++.++ +.++..+.+ .+.+.....+++..+.+|.+|+|+|..|....
T Consensus 101 i~~~~-v~~i~~~~~----~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~ 146 (338)
T 3itj_A 101 IITET-VSKVDLSSK----PFKLWTEFNEDAEPVTTDAIILATGASAKRMH 146 (338)
T ss_dssp EECSC-EEEEECSSS----SEEEEETTCSSSCCEEEEEEEECCCEEECCCC
T ss_pred EEEeE-EEEEEEcCC----EEEEEEEecCCCcEEEeCEEEECcCCCcCCCC
Confidence 99988 888887654 24444433334566899999999999876543
No 489
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=98.11 E-value=6.4e-06 Score=63.40 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=49.7
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----HHHHHHcCC-----CcccEEEEEeCCeEEEEeeC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----PEIAEAAGI-----MGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i-----~~~Pt~~~~~~g~~~~~~~g 525 (540)
..++.|+.+|||+|++++..++++ +-.+.++.+|.+++ .++.+.++. .++|+++ .+|+.+. |
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~----~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~--i~g~~i~---g 74 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEEN----NIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIF--IDDEHIG---G 74 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHT----TCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEE--ETTEEEE---S
T ss_pred eEEEEEEcCCChhHHHHHHHHHHc----CCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEE--ECCEEEe---C
Confidence 347788999999999999888764 22345556666554 357777787 8999974 4887543 3
Q ss_pred CCCHHHHHHHHHhh
Q 009224 526 VKMKKEYREFIEAN 539 (540)
Q Consensus 526 ~~~~~~~~~~i~~~ 539 (540)
.+++.+++++.
T Consensus 75 ---~~~i~~~~~~~ 85 (89)
T 3msz_A 75 ---FTELKANADKI 85 (89)
T ss_dssp ---HHHHHHTHHHH
T ss_pred ---hHHHHHHHHHH
Confidence 34566655543
No 490
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=98.11 E-value=2.3e-05 Score=76.57 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=71.9
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------------cHHHHHHHhcCCCeEEEeC
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------~~~~~~~~l~~~gv~~~~~ 296 (540)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ......+.+++.+++++.+
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 5899999999999999999999999999999764321 1233445567789999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc---ccCcc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH---SPNSQ 342 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~---~p~~~ 342 (540)
+.+.++....++. ..+.. .+++ +.+|.+|+|+|. .|...
T Consensus 88 ~~v~~i~~~~~~~---~~v~~---~~g~-~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 88 QAVESVEKQADGV---FKLVT---NEET-HYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp CCEEEEEECTTSC---EEEEE---SSEE-EEEEEEEECCTTSCCEECCC
T ss_pred CEEEEEEECCCCc---EEEEE---CCCE-EEeCEEEECCCCCcCCCCCC
Confidence 9999998875432 22322 2233 899999999999 66544
No 491
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=98.11 E-value=2.1e-05 Score=84.16 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=32.7
Q ss_pred CcccEEEECCCHHHHHHHHHHH---H-cCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAA---R-ANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~---~-~g~~v~lie~~~~ 128 (540)
..+||||||||+|||+||+.|+ + .|.+|+|+||...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 3479999999999999999999 6 8999999999764
No 492
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=98.10 E-value=2.7e-06 Score=89.04 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=38.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
.+||+|||||+|||+||..|++.|++|+|+|+++. +||....
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~---~GGr~~t 45 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDR---VGGRTYT 45 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS---SBTTCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC---CCCceee
Confidence 47999999999999999999999999999999887 7877643
No 493
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=98.10 E-value=1.3e-05 Score=82.56 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=73.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. +. ....++.+.+.+.++ +++
T Consensus 171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~~----~~d~~~~~~l~~~l~---v~i 228 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR-------AL--------IT----LEDQDIVNTLLSILK---LNI 228 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------TT----SCCHHHHHHHHHHHC---CCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc-------CC--------CC----CCCHHHHHHHHhcCE---EEE
Confidence 357899999999999999999999999999997543 11 01 112455555555544 888
Q ss_pred EEe-eEEEEEeeC-CcEEEEEC---Ce--EEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKS-NPFTVKSG---ER--KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~-~~~~v~~~---~~--~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.++ +.+.+... ++ .+.+|.||+|+|.+|+..
T Consensus 229 ~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~ 275 (466)
T 3l8k_A 229 KFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP 275 (466)
T ss_dssp ECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC
T ss_pred EECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc
Confidence 887 788888766 66666543 33 799999999999988765
No 494
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=98.10 E-value=1.2e-05 Score=79.28 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=68.5
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc-------------------------------------ccHHHHH
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR-------------------------------------ASRAMQD 283 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~-------------------------------------~~~~~~~ 283 (540)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ....+..
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 479999999999999999999999999999876421 0123344
Q ss_pred HHhcCCCeEEEeCceEEEEeeCCCCceeeEE-EEEccCCceEEEEccEEEEecccc
Q 009224 284 RVFNNPNITVHFNTETVDVVSNTKGQMSGIL-LRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 284 ~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~-~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
+.+++.|++++.++++.++..+++ .+. +.. .++ ++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~----~~~~v~~---~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGE----RLRVVAR---DGR-QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETT----EEEEEET---TSC-EEEEEEEEECCCSG
T ss_pred HHHHHcCCEEEcCCEEEEEEECCC----cEEEEEe---CCC-EEEeCEEEECCCCC
Confidence 445667999999999999987754 233 322 223 69999999999963
No 495
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=98.08 E-value=2.5e-06 Score=76.24 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=36.0
Q ss_pred CeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECc
Q 009224 454 RLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIE 494 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~ 494 (540)
++.++.|++.|||+|+.+.|.+ .++.++++++++|+.+++.
T Consensus 15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 5789999999999999999987 6888888878888888874
No 496
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=98.08 E-value=1.2e-05 Score=70.43 Aligned_cols=86 Identities=7% Similarity=0.022 Sum_probs=60.4
Q ss_pred CCeEEE-EEECCCChhhh-hhhHHHHHHHHHhCC-CeEEEE-EECcC-----------------------CHHHHHHcCC
Q 009224 453 PRLICV-LYTSPTCGPCR-TLKPILGKVIDEFDE-NVHFVE-IDIEE-----------------------DPEIAEAAGI 505 (540)
Q Consensus 453 ~~~~~v-~f~~~~C~~C~-~~~~~~~~~~~~~~~-~~~~~~-vd~~~-----------------------~~~~~~~~~i 505 (540)
++++++ .||+.||++|. ...|.|+++++++.+ ++.++. +..+. +.++++.|++
T Consensus 43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv 122 (173)
T 3mng_A 43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDL 122 (173)
T ss_dssp TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTC
T ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCC
Confidence 455544 55699999999 589999999999853 566664 66642 2356777887
Q ss_pred C-------------cccEEEEEeCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 506 M-------------GTPCVQFFKNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 506 ~-------------~~Pt~~~~~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
. ..|+.+++.+|++.....+. ++.++....|++
T Consensus 123 ~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~ 172 (173)
T 3mng_A 123 LLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 172 (173)
T ss_dssp BCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred CcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence 5 35977777799988877764 345556666654
No 497
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=98.06 E-value=3.5e-06 Score=86.46 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=39.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
..+||+|||||++||+||..|++.|++|+|+|+++. +||....
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~---~GG~~~t 52 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH---YGGEAAS 52 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCGGGCE
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC---CCccccc
Confidence 458999999999999999999999999999999988 8887654
No 498
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=98.05 E-value=4.3e-06 Score=85.21 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcC--CeEEEEEecccccc-------------cHH---HHHHHhcCCCeEEEeCceEEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFA--RHVHLLVRREQLRA-------------SRA---MQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g--~~v~li~~~~~~~~-------------~~~---~~~~~l~~~gv~~~~~~~v~~ 301 (540)
.|+|+|||+|+.|+.+|..|++.+ .+|+++++++.+.- ..+ -..+++++.||+++.+ ++++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~ 80 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES 80 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence 378999999999999999999876 68999999875321 000 1123456679999876 6889
Q ss_pred EeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccC
Q 009224 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 340 (540)
|+.+.+ .|.+ .+++++++|.+|+|+|.++.
T Consensus 81 Id~~~~----~V~~-----~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 81 IDPDAN----TVTT-----QSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EETTTT----EEEE-----TTCCEEECSEEEECCCCEEE
T ss_pred EECCCC----EEEE-----CCCCEEECCEEEEeCCCCcc
Confidence 987764 3444 23456999999999998754
No 499
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=98.04 E-value=5.3e-06 Score=83.09 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cH----------H---HHHHHhcCCCeEEEeCceEEE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SR----------A---MQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~----------~---~~~~~l~~~gv~~~~~~~v~~ 301 (540)
+..+|+|||+|+.|+.+|..|...+.+|+++++.+.+.- .. + ...+.+++.||++++++++++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~ 87 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS 87 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence 345799999999999999999888899999999775421 00 0 112234567999999999999
Q ss_pred EeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc
Q 009224 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL 343 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 343 (540)
+..+.+ .+.+ .+++++.+|.+|+|||.+|....
T Consensus 88 id~~~~----~v~~-----~~g~~~~yd~lvlAtG~~p~~p~ 120 (385)
T 3klj_A 88 IDPNNK----LVTL-----KSGEKIKYEKLIIASGSIANKIK 120 (385)
T ss_dssp EETTTT----EEEE-----TTSCEEECSEEEECCCEEECCCC
T ss_pred EECCCC----EEEE-----CCCCEEECCEEEEecCCCcCCCC
Confidence 987654 2444 22457999999999999887543
No 500
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=98.04 E-value=9e-06 Score=84.32 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=71.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--------------CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--------------NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR 160 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--------------g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (540)
..++|||||+.|+.+|..|++. ..+|+|+|..+. +. |. .++++.++
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~-------il--------~~-----~~~~~~~~ 277 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI-------VL--------NM-----FEKKLSSY 277 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSS-------SS--------TT-----SCHHHHHH
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccc-------cc--------cC-----CCHHHHHH
Confidence 4799999999999999998754 367999996543 11 11 23578889
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CC----eEEEecEEEEccCCCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GE----RKVKCHSIVFATGATAK 210 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~----~~~~~d~lviAtG~~~~ 210 (540)
..+.+++.||+++++ .|+.++.+.....+.. ++ +++.+|.||.|+|..|+
T Consensus 278 ~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~ 333 (502)
T 4g6h_A 278 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR 333 (502)
T ss_dssp HHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred HHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence 999999999999988 7777764433333322 22 46999999999998765
Done!