BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009225
         (540 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O27771|PORB_METTH Pyruvate synthase subunit PorB OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=porB PE=4 SV=1
          Length = 288

 Score = 35.4 bits (80), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 55/154 (35%), Gaps = 28/154 (18%)

Query: 9   RGCVGGRSSSSKKKKKKSFKRVASRLPTDGSLDKVDRPPPVDR------HSSFTNPALQA 62
           RGC G  ++   +   K   +    + + G L+ +  P P         H +F N A  A
Sbjct: 14  RGCAGCGATVGVRLALKVLGKNTVAVSSTGCLEVITTPYPETAWRIPWIHVAFENAAAVA 73

Query: 63  GSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNI 122
             V+ +        ++ G DD +       VV+  G  G +     +L  A  RGHN+  
Sbjct: 74  SGVERA-------LKAKGRDDVN-------VVAFAGDGGTADIGLQALSGAMERGHNIIY 119

Query: 123 QC--------TSLTDQLQRPGGLSAGNSAHNSVS 148
            C        T +      P G S   S H   S
Sbjct: 120 ICYDNEAYMNTGIQRSASTPYGASTTTSPHGKES 153


>sp|Q9NIV0|RHGA_DICDI Rhesus-like glycoprotein A OS=Dictyostelium discoideum GN=rhgA PE=1
           SV=1
          Length = 527

 Score = 35.0 bits (79), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 202 DNCGIIPSNCLPCLASTVPSVEKRRSGSSSPPRPFKKTASKLSFKWKEGHANATLVSSKM 261
           D CGI+  +C+P    ++ ++     G ++ P  + K   +  F+  +  A+A L+++ +
Sbjct: 354 DTCGILNLHCIPGFLGSIAAIFAAIKGLNN-PNMYSKVEFEQIFRAGDSQASANLIATMV 412

Query: 262 LLSRPISGA---QVPFCPIEK-KMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAA 314
            +   I G     V    ++K K L S    + + F +  ++Y +D     A N AA
Sbjct: 413 SIGLGIVGGLLVGVILLQLKKIKGLKSKEYYQDSAFWILPIDYPKDVATVVALNNAA 469


>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
          Length = 1405

 Score = 34.7 bits (78), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 16/101 (15%)

Query: 23  KKKSFKRVASRLPTDGSLDKVDRPPPVDRHSSFTNPALQAGSVDDSWFDSVAIFESDGED 82
           K +SF R+ S+ P            P D +    N  + AG VD S          DG+ 
Sbjct: 611 KTRSFSRIKSKTP---------EMCPKDGYLMIRNSEIIAGVVDKSVV-------GDGKK 654

Query: 83  DDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNIQ 123
           D  F  +  D  +L  ++ ++R S +  R   +RG ++ I+
Sbjct: 655 DSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIE 695


>sp|P57137|FTSY_BUCAI Signal recognition particle receptor FtsY OS=Buchnera aphidicola
           subsp. Acyrthosiphon pisum (strain APS) GN=ftsY PE=3
           SV=1
          Length = 378

 Score = 33.9 bits (76), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 12/121 (9%)

Query: 260 KMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFG 319
           ++ LS+ I   +V F  +E+KML   + I  NT      N ++D  +E   N    Y   
Sbjct: 100 QIFLSKKID--EVLFEELEEKML--LADIGINTTNRIISNLIKDVNREDLKNSEKLY--- 152

Query: 320 VDVFLSQRKIDHIARFVELP-AISSHAKLPPMLV-VNVQIPLYPTAIFQSEIDGEGISIV 377
              FL +RK+ +I + VE+P  ISSH+    ++V VN        A    +   EG SI+
Sbjct: 153 ---FLLKRKMFNILKKVEIPLEISSHSPFVILVVGVNGTGKTTTVAKLAEKYKLEGKSIM 209

Query: 378 L 378
           L
Sbjct: 210 L 210


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,150,343
Number of Sequences: 539616
Number of extensions: 9276048
Number of successful extensions: 25882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 25415
Number of HSP's gapped (non-prelim): 276
length of query: 540
length of database: 191,569,459
effective HSP length: 122
effective length of query: 418
effective length of database: 125,736,307
effective search space: 52557776326
effective search space used: 52557776326
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)