Query 009225
Match_columns 540
No_of_seqs 141 out of 229
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 21:57:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07059 DUF1336: Protein of u 100.0 5E-74 1.1E-78 559.7 21.6 222 285-526 1-227 (227)
2 PLN00188 enhanced disease resi 100.0 5.8E-66 1.3E-70 561.9 19.0 236 263-539 480-718 (719)
3 PF15434 FAM104: Family 104 14.6 1.3E+02 0.0028 27.9 2.2 26 38-66 7-32 (110)
4 PF06348 DUF1059: Protein of u 12.8 37 0.00079 27.4 -1.5 25 494-518 7-31 (57)
5 COG1521 Pantothenate kinase ty 10.0 6.3E+02 0.014 26.3 5.8 108 373-502 19-131 (251)
6 KOG1909 Ran GTPase-activating 9.3 1.9E+02 0.0041 31.9 1.8 66 465-530 29-102 (382)
7 PF04308 DUF458: Protein of un 8.7 2.2E+02 0.0047 27.5 1.8 34 467-505 94-127 (144)
8 COG5621 Predicted secreted hyd 7.9 3.7E+02 0.0081 29.3 3.3 67 255-326 170-246 (354)
9 PF10653 Phage-A118_gp45: Prot 7.4 59 0.0013 26.8 -2.2 36 54-102 25-60 (62)
10 KOG3748 Uncharacterized conser 6.7 3.5E+02 0.0076 29.3 2.4 50 451-507 90-142 (477)
No 1
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=5e-74 Score=559.74 Aligned_cols=222 Identities=44% Similarity=0.731 Sum_probs=207.6
Q ss_pred eecCCCCceEEcCCCcccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccccCC-CCCcEEEEEEEcCCCCCc
Q 009225 285 WSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHA-KLPPMLVVNVQIPLYPTA 363 (540)
Q Consensus 285 WSepd~s~FkVRG~~YlkDKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~~~~-k~P~vfIVNiQVPg~P~s 363 (540)
||+|++++|+|||+|||+||||+||+++ +|+++|||||++++|++|||+|+.++.+.... +.||+||||||||+||++
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999875 99999999999999999999999999877654 599999999999999999
Q ss_pred cccccCCCCceEEEEEEEeCchhhccCChhhHhhHhhhcchhhhhhcCCCCCCchhhh-cceeeEeEeecCccchhhHHH
Q 009225 364 IFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR-ERLKILGRVVNVEDLHLSAAE 442 (540)
Q Consensus 364 lF~~~~DGeG~SlVlYF~l~e~~~kelp~~f~~li~Rfiddevekvk~f~~d~~d~FR-eRFKLIP~VVnGpwl~l~aae 442 (540)
+| ++.||+|||+|+||++++++.++.++++.++++||++.+ +..|+|| +||||||+|+||+|+
T Consensus 80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------ 143 (227)
T PF07059_consen 80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------ 143 (227)
T ss_pred cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence 99 999999999999999999998888888999999999833 1127899 999999999999996
Q ss_pred HHHHHhh-CCceeeec--CcceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecCCCCCcccceece
Q 009225 443 RKLLQAY-NEKPVLSR--PQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCC 519 (540)
Q Consensus 443 r~l~qav-ngKPvLir--~q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteeELPErLLG~ 519 (540)
+++++ |+|||||| ++|+||+|+||||||||||+ |+|||++++++++|+|+|+|||||||||+++||||||||||
T Consensus 144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~ 220 (227)
T PF07059_consen 144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC 220 (227)
T ss_pred --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence 45555 99999997 69999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEecccc
Q 009225 520 IRINGID 526 (540)
Q Consensus 520 vRLn~ID 526 (540)
+||+|||
T Consensus 221 ~Rl~~id 227 (227)
T PF07059_consen 221 VRLNHID 227 (227)
T ss_pred EEeeecC
Confidence 9999998
No 2
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=5.8e-66 Score=561.91 Aligned_cols=236 Identities=26% Similarity=0.357 Sum_probs=216.4
Q ss_pred eeeecCCCcccccCCCCCCCCceecCCCCceEEcCCCcccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccc
Q 009225 263 LSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAIS 342 (540)
Q Consensus 263 l~rp~aG~svp~~~~e~~~~~~WSepd~s~FkVRG~~YlkDKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~ 342 (540)
+.-...++++++.+.++ +.+||++|++++|+|||+|||+||+|+||+++ +|+|+|||||++++|++|||+|++++++.
T Consensus 480 ~d~~~~~g~l~~~~~~~-~~ncWs~Pd~~~F~VRG~~Yl~Dk~KvPAg~~-l~~lvgvDwfks~~ridhVa~r~~~~vq~ 557 (719)
T PLN00188 480 IDLSCFSGNLRRDDRDK-ARDCWRISDGNNFKVRSKNFCYDKSKIPAGKH-LMDLVAVDWFKDTKRMDHVARRKGCAAQV 557 (719)
T ss_pred ccccccccccccCCCCC-CCCCccCCCCcceEEcCCCcccCCccccCCcc-ceeeEEEEEEcCCchhhHhhcCCCchhhh
Confidence 34446788899998884 99999999999999999999999999999885 89999999999999999999999999988
Q ss_pred cCCCCCcEEEEEEEcCCCCCccccccCCCCceEEEEEEEeCchhhccCChhhHhhHhhhcchhhhhhcCCCCCCchhhh-
Q 009225 343 SHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR- 421 (540)
Q Consensus 343 ~~~k~P~vfIVNiQVPg~P~slF~~~~DGeG~SlVlYF~l~e~~~kelp~~f~~li~Rfiddevekvk~f~~d~~d~FR- 421 (540)
...+.||+||||||||+.|. ||+|+||++++ +++ +++++||+++ +|+||
T Consensus 558 a~~k~~F~fiVNlQvPg~~~-----------ys~V~Yf~~~~-----l~~--~sLl~rF~~G------------DD~fRn 607 (719)
T PLN00188 558 AAEKGLFSFVVNLQVPGSTH-----------YSMVFYFVTKE-----LVP--GSLLQRFVDG------------DDEFRN 607 (719)
T ss_pred hcccCCcEEEEEEEccCCCc-----------eEEEEEEeccC-----CCC--chHHHHhccC------------chhHhh
Confidence 88889999999999999875 99999999854 444 4788998874 49999
Q ss_pred cceeeEeEeecCccchhhHHHHHHHHhhCCceeeec--CcceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEe
Q 009225 422 ERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSR--PQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILD 499 (540)
Q Consensus 422 eRFKLIP~VVnGpwl~l~aaer~l~qavngKPvLir--~q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVD 499 (540)
+||||||.|++|||| |+++||+||||+| ++|+||+|+|||||||||++ |.||++++++++||+++||||
T Consensus 608 sRfKLIP~Iv~GpWi--------Vk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~s-s~va~~v~~l~~g~~~~lvvD 678 (719)
T PLN00188 608 SRLKLIPSVPKGSWI--------VRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGS-STVANGVLGLVIGVITTLVVD 678 (719)
T ss_pred CceEEeccccCCceE--------EEeccCCcceEeeeecceeEecCCCeEEEEEeecc-HHHHHHHHHHHHhhhhheEEE
Confidence 999999999999996 7899999999999 59999999999999999999 889999999999999999999
Q ss_pred eEEEeecCCCCCcccceeceEEecccccCCccccCCCCCC
Q 009225 500 VGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEET 539 (540)
Q Consensus 500 mGFvIEGqteeELPErLLG~vRLn~IDl~~A~~l~l~~~~ 539 (540)
|||+|||+++|||||||||||||++||+..|....+..++
T Consensus 679 ~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~~~~~~ 718 (719)
T PLN00188 679 MAFLVQANTYEELPERLIGAVRVSHVELSSAIVPKLDPDT 718 (719)
T ss_pred EEEEEecCChhhCchhheeeEEecccchhhccccCCCCCC
Confidence 9999999999999999999999999999999887765543
No 3
>PF15434 FAM104: Family 104
Probab=14.61 E-value=1.3e+02 Score=27.90 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcc
Q 009225 38 GSLDKVDRPPPVDRHSSFTNPALQAGSVD 66 (540)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 66 (540)
+.-++--+++++- |+-.||.|| .+.|
T Consensus 7 g~eEd~h~~pq~K--R~~r~~v~q-ds~d 32 (110)
T PF15434_consen 7 GNEEDNHHSPQPK--RSSRNPVFQ-DSWD 32 (110)
T ss_pred CcccccccCCccc--ccCCCcccc-cccc
Confidence 4445555556665 888999999 4433
No 4
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=12.84 E-value=37 Score=27.40 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.4
Q ss_pred ceEEEeeEEEeecCCCCCcccceec
Q 009225 494 KICILDVGLTIQGNKVDELPEQILC 518 (540)
Q Consensus 494 k~LVVDmGFvIEGqteeELPErLLG 518 (540)
+.++.|.+|+|.|.+++||-+++.-
T Consensus 7 ~d~g~~C~~~~~a~tedEll~~~~~ 31 (57)
T PF06348_consen 7 RDVGPDCGFVIRAETEDELLEAVVE 31 (57)
T ss_pred cccCCCCCeEEeeCCHHHHHHHHHH
Confidence 3457889999999999999887643
No 5
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=10.04 E-value=6.3e+02 Score=26.30 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=57.6
Q ss_pred ceEEEEEEEeCchhhccCChhhHhhHhhhcchhhhhhcCCCCCCchhhh-cceeeEeEeecCccchhhHHHHHHHHhhCC
Q 009225 373 GISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR-ERLKILGRVVNVEDLHLSAAERKLLQAYNE 451 (540)
Q Consensus 373 G~SlVlYF~l~e~~~kelp~~f~~li~Rfiddevekvk~f~~d~~d~FR-eRFKLIP~VVnGpwl~l~aaer~l~qavng 451 (540)
+-.++.+|++..+-... .+.+...+..+++. + .++ =...+|..|+ |-+.. ..+.++.+-...
T Consensus 19 ~~~~~~~~r~~t~~~~~-~del~~~~~~l~~~------------~-~~~~~~~~~issvv--p~~~~-~~~~~~~~~f~~ 81 (251)
T COG1521 19 GGKVVQTWRLATEDLLT-EDELGLQLHNLFDG------------N-SVRDIDGIVISSVV--PPLGI-FLEAVLKEYFKV 81 (251)
T ss_pred CCeEEEEEeeccccccc-HHHHHHHHHHHhcc------------c-cccccccceeeccC--ccHHH-HHHHHHHHHhcc
Confidence 35888999997653221 12222223332221 1 223 2568899998 33222 235567788888
Q ss_pred ce-eeecC---cceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEE
Q 009225 452 KP-VLSRP---QHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGL 502 (540)
Q Consensus 452 KP-vLir~---q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGF 502 (540)
+| ++..+ .......++|-|+.+|.-- ..+| .+..-+.. -+|||+|=
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~p~elG~DR~~-n~va---A~~~~~~~-~vVVD~GT 131 (251)
T COG1521 82 KPLVVISPKQLLGIRVLYDNPEELGADRIA-NAVA---AYHKYGKA-VVVVDFGT 131 (251)
T ss_pred CceeeechhhccCCcccCCChhhhcHHHHH-HHHH---HHHHcCCc-EEEEEcCC
Confidence 89 55553 2233445899999999743 1111 11111222 68888873
No 6
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=9.25 E-value=1.9e+02 Score=31.90 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=56.3
Q ss_pred CCCeEEEEEEccCchHHHHHHHHHhhcccceE-EEeeEEEeecCCCCCcccc-------eeceEEecccccCCc
Q 009225 465 GENYLEIDIDMHRFSYISRKGFEAFLDRLKIC-ILDVGLTIQGNKVDELPEQ-------ILCCIRINGIDYMNY 530 (540)
Q Consensus 465 G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~L-VVDmGFvIEGqteeELPEr-------LLG~vRLn~IDl~~A 530 (540)
.+.|-+||++=.+|+.=|.+.+.-++...+.| .+++.=..-|+-.+|+||. |+||-+|..||+++.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 45688999999999998999998888888776 4677778899999999986 578889999999873
No 7
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=8.75 E-value=2.2e+02 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=25.9
Q ss_pred CeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEee
Q 009225 467 NYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQ 505 (540)
Q Consensus 467 NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIE 505 (540)
-=+||.+||+. ..-.|..+.-+.|++.. |||.-.
T Consensus 94 ~~~EiHiDIg~-~g~T~~~i~E~vG~v~~----~G~~~k 127 (144)
T PF04308_consen 94 VDLEIHIDIGT-NGKTRELIKEVVGYVEG----MGFEAK 127 (144)
T ss_pred ccEEEEEEcCC-CCchHHHHHHHHHHHHH----CCceEE
Confidence 34699999998 77788888888887765 565543
No 8
>COG5621 Predicted secreted hydrolase [General function prediction only]
Probab=7.94 E-value=3.7e+02 Score=29.29 Aligned_cols=67 Identities=22% Similarity=0.181 Sum_probs=43.9
Q ss_pred ccccccceeeeecCCCcccccCCCCCCCCceecC----------CCCceEEcCCCcccCCccccCCCCCcceeeeeeEEe
Q 009225 255 TLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQI----------EPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFL 324 (540)
Q Consensus 255 ~~~s~k~~l~rp~aG~svp~~~~e~~~~~~WSep----------d~s~FkVRG~~YlkDKkKvpAg~~~lf~lvGVDlFk 324 (540)
||...++.+-.+-+|.+|+-.+.. -....|.| ++.+|+|+|..+|.. +-.+.+.+=+.+|-|||.
T Consensus 170 tL~a~gP~Vlqg~~g~sVk~~lg~--Asyyyslp~~~v~Gtv~v~g~t~~V~G~AWld~---Ewgs~~lA~~q~gwDwfs 244 (354)
T COG5621 170 TLQATGPPVLQGDRGYSVKSALGQ--ASYYYSLPRYEVSGTVSVDGETFEVTGLAWLDH---EWGSQPLASEQVGWDWFS 244 (354)
T ss_pred EEEccCCceEeCCCccccchhccc--cceeeeeeeeeeeeeEEecCceeEEcceeeecc---ccccccccccccccceEE
Confidence 344556667777778888833222 23344443 667899999999863 333444556899999997
Q ss_pred eC
Q 009225 325 SQ 326 (540)
Q Consensus 325 S~ 326 (540)
-.
T Consensus 245 lh 246 (354)
T COG5621 245 LH 246 (354)
T ss_pred EE
Confidence 63
No 9
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=7.38 E-value=59 Score=26.77 Aligned_cols=36 Identities=28% Similarity=0.571 Sum_probs=23.6
Q ss_pred CCCCccccCCCcccccccchhhhccCCCCCCCceeecCCcccccCCCCc
Q 009225 54 SFTNPALQAGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGV 102 (540)
Q Consensus 54 ~~~n~~~~~~~~~~~w~ds~~~~~sd~~~~ddf~sv~~d~~s~~~~~~~ 102 (540)
-.+||+|| .-++..|+-||.--||- .-+-|.|+|.+
T Consensus 25 mianpaf~---------qkiplietgcekm~dyi----eelklkgyeev 60 (62)
T PF10653_consen 25 MIANPAFQ---------QKIPLIETGCEKMTDYI----EELKLKGYEEV 60 (62)
T ss_pred HhcCHHHH---------hccchhhhhhHHHHHHH----HHHhhcchhhh
Confidence 46899998 45789999995444442 23456666543
No 10
>KOG3748 consensus Uncharacterized conserved protein [Function unknown]
Probab=6.69 E-value=3.5e+02 Score=29.29 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=40.7
Q ss_pred CceeeecC---cceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecC
Q 009225 451 EKPVLSRP---QHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGN 507 (540)
Q Consensus 451 gKPvLir~---q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGq 507 (540)
.+|+|-+| ....++|+|-.|-.||-..| +..+.+.+...++-+||+-|.+
T Consensus 90 ts~~Lq~PV~i~Anv~~~P~~~et~vD~s~F-------veka~d~FPDaT~SLGWTk~sn 142 (477)
T KOG3748|consen 90 TSPVLQYPVILHANVFRSPRSVETEVDPSTF-------VEKAKDLFPDATLSLGWTKQSN 142 (477)
T ss_pred cccccccceEEecccccCCCCCccccCchhH-------HHHHHHhCCCcEEeeccccCCC
Confidence 78888774 55789999999999998765 4566777889999999998853
Done!