Query 009225
Match_columns 540
No_of_seqs 141 out of 229
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 14.9 43 0.0015 24.5 0.5 19 494-512 14-32 (37)
2 1tac_A TAT protein; transcript 11.0 2E+02 0.0067 24.6 3.4 17 13-30 42-58 (86)
3 3mi9_C Protein TAT; P-TEFB, HI 5.5 1.6E+02 0.0054 25.1 0.5 11 13-23 42-52 (86)
4 1tvs_A Transactivator protein; 4.8 2E+02 0.0069 23.9 0.7 9 22-30 56-64 (75)
5 3bqa_A Sensor protein PHOQ; hi 4.8 2.4E+02 0.0083 26.1 1.2 20 459-478 68-87 (148)
6 2zou_A Spondin-1; beta-sandwic 4.5 3.2E+02 0.011 24.3 1.8 24 500-523 54-80 (149)
7 1m8o_B Platele integrin BETA3 4.4 5.7E+02 0.019 18.9 2.8 12 50-61 34-45 (47)
8 3npd_A Putative secreted prote 4.4 3.9E+02 0.013 23.7 2.2 16 493-508 28-43 (118)
9 3l4n_A Monothiol glutaredoxin- 4.1 8.3E+02 0.028 20.8 4.1 56 444-499 6-77 (127)
10 4ekx_C 14L protein; binding pr 3.5 5.9E+02 0.02 22.4 2.5 39 353-391 7-49 (116)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=14.94 E-value=43 Score=24.54 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.2
Q ss_pred ceEEEeeEEEeecCCCCCc
Q 009225 494 KICILDVGLTIQGNKVDEL 512 (540)
Q Consensus 494 k~LVVDmGFvIEGqteeEL 512 (540)
=++..|+||.++...+|.+
T Consensus 14 FSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 14 FSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred EEEEeccccccCCcchhhh
Confidence 3789999999998776654
No 2
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=11.03 E-value=2e+02 Score=24.56 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=7.3
Q ss_pred ccccccchhhhhhccchh
Q 009225 13 GGRSSSSKKKKKKSFKRV 30 (540)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (540)
|+-+++-+||+ |+|||.
T Consensus 42 GLGIsYgRkkR-r~RRr~ 58 (86)
T 1tac_A 42 GLGISYGRKKR-RQRRRP 58 (86)
T ss_dssp TSSSSSCCCSG-GGSCTT
T ss_pred CCceEeccccc-cccCCC
Confidence 44455544333 333443
No 3
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=5.54 E-value=1.6e+02 Score=25.12 Aligned_cols=11 Identities=27% Similarity=0.178 Sum_probs=3.9
Q ss_pred ccccccchhhh
Q 009225 13 GGRSSSSKKKK 23 (540)
Q Consensus 13 ~~~~~~~~~~~ 23 (540)
|+-+++-+||+
T Consensus 42 GLGIsYgRkkR 52 (86)
T 3mi9_C 42 ALGISYGRKKR 52 (86)
T ss_dssp TSCCCSCC---
T ss_pred CCccccccccc
Confidence 44455544433
No 4
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=4.84 E-value=2e+02 Score=23.92 Aligned_cols=9 Identities=33% Similarity=0.301 Sum_probs=3.6
Q ss_pred hhhhccchh
Q 009225 22 KKKKSFKRV 30 (540)
Q Consensus 22 ~~~~~~~~~ 30 (540)
||||+|||.
T Consensus 56 KKRrqRRr~ 64 (75)
T 1tvs_A 56 KKNKQRLKA 64 (75)
T ss_dssp HHHHHHHHH
T ss_pred HhhhcccCC
Confidence 333334444
No 5
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=4.80 E-value=2.4e+02 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.2
Q ss_pred cceeeeCCCeEEEEEEccCc
Q 009225 459 QHEFYLGENYLEIDIDMHRF 478 (540)
Q Consensus 459 q~~Yy~G~NYlEIDVDIhSF 478 (540)
+..|.+.++|+|||.|++..
T Consensus 68 ~~eWLkk~gf~Eidtd~~~s 87 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVNDT 87 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHHH
T ss_pred CHHHhcCCCcEEEecCcchH
Confidence 46788889999999999873
No 6
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=4.49 E-value=3.2e+02 Score=24.35 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=18.8
Q ss_pred eEEEeecCCCCCc---ccceeceEEec
Q 009225 500 VGLTIQGNKVDEL---PEQILCCIRIN 523 (540)
Q Consensus 500 mGFvIEGqteeEL---PErLLG~vRLn 523 (540)
.||+||++.+... +...+|...+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 5999999877654 56789998864
No 7
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=4.44 E-value=5.7e+02 Score=18.89 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=9.1
Q ss_pred CCCCCCCCcccc
Q 009225 50 DRHSSFTNPALQ 61 (540)
Q Consensus 50 ~~~~~~~n~~~~ 61 (540)
.+-.+|.||+|+
T Consensus 34 ~~tttf~np~~~ 45 (47)
T 1m8o_B 34 EATSTFTNITYR 45 (47)
T ss_dssp SSSCCCTTSCCC
T ss_pred CcceeeeCCccc
Confidence 334679999998
No 8
>3npd_A Putative secreted protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CXS; 1.60A {Pseudomonas aeruginosa}
Probab=4.39 E-value=3.9e+02 Score=23.71 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=12.6
Q ss_pred cceEEEeeEEEeecCC
Q 009225 493 LKICILDVGLTIQGNK 508 (540)
Q Consensus 493 lk~LVVDmGFvIEGqt 508 (540)
+.-=++|-|+++||..
T Consensus 28 InEdiLDqgYTVeG~~ 43 (118)
T 3npd_A 28 INEDILDQGYTVEGNQ 43 (118)
T ss_dssp SSSSEEEEEEEEETTE
T ss_pred hhhHHhhcceeechHH
Confidence 3455899999999963
No 9
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=4.12 E-value=8.3e+02 Score=20.83 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHhhCCceeee--cCcceee------------eCCCeEEEEEEccCchHHHHHHHHHhhc--ccceEEEe
Q 009225 444 KLLQAYNEKPVLS--RPQHEFY------------LGENYLEIDIDMHRFSYISRKGFEAFLD--RLKICILD 499 (540)
Q Consensus 444 ~l~qavngKPvLi--r~q~~Yy------------~G~NYlEIDVDIhSFS~IARk~l~lv~g--~lk~LVVD 499 (540)
.+.+.++..||.+ .+.|.|. -+..|-++|||...-..-.+..+....| .+..+.||
T Consensus 6 ~~~~ii~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~ 77 (127)
T 3l4n_A 6 EYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN 77 (127)
T ss_dssp HHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHHccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence 4667778888876 3555542 1567999999987422334455544444 35666665
No 10
>4ekx_C 14L protein; binding protein, beta trefoil, immunoglobulin fold, YLDV, YA yatapoxvirus, cytokine signaling, cytokine-viral prote complex; 1.75A {Yaba-like disease virus} PDB: 4eee_A
Probab=3.46 E-value=5.9e+02 Score=22.44 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=22.9
Q ss_pred EEEEcCCCCCc--ccc--ccCCCCceEEEEEEEeCchhhccCC
Q 009225 353 VNVQIPLYPTA--IFQ--SEIDGEGISIVLYFKLNESYAKELP 391 (540)
Q Consensus 353 VNiQVPg~P~s--lF~--~~~DGeG~SlVlYF~l~e~~~kelp 391 (540)
||++||..+.+ ++. +-..-+++|.+.|+.-...+.++++
T Consensus 7 ~~v~vp~~~ts~l~l~C~~~s~~~~fS~lYW~lgN~sfIe~l~ 49 (116)
T 4ekx_C 7 VNIHVPVKETSKVVLECRGDSYFRHFSYVYWIIGKNKTVDQLP 49 (116)
T ss_dssp EEEEEESSCCSEEEEEEEEECSCTTSCEEEEEETTTEEGGGSC
T ss_pred EEEEeccCCCcEEEEEeEEEeCCCCccEEEEEEcCCcchhhhc
Confidence 67888887663 332 2222367885555555666666665
Done!