Query 009225
Match_columns 540
No_of_seqs 141 out of 229
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 21:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009225.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009225hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gw6a1 c.52.2.1 (A:2-123) tRN 5.9 71 0.0051 26.6 0.6 66 300-383 56-121 (122)
2 d1eucb1 c.23.4.1 (B:246-393) S 5.7 1.4E+02 0.01 25.2 2.5 27 427-455 21-47 (148)
3 d2fsra1 d.108.1.1 (A:4-167) Pr 4.8 1.2E+02 0.0089 23.0 1.4 43 467-524 122-164 (164)
4 d2nu7b1 c.23.4.1 (B:239-388) S 4.5 1.9E+02 0.014 24.2 2.6 27 427-455 21-47 (150)
5 d1unnc_ d.240.1.1 (C:) DNA pol 3.3 2.9E+02 0.021 20.8 2.4 25 511-536 86-110 (111)
6 d2qqra1 b.34.9.1 (A:897-955) J 3.0 2.4E+02 0.017 20.7 1.5 22 458-479 14-42 (59)
7 d2j5ha1 g.3.11.7 (A:1-39) Crip 3.0 1.8E+02 0.013 19.8 0.7 7 202-208 2-8 (39)
8 d1ansa_ g.11.1.1 (A:) Neurotox 2.7 3.2E+02 0.023 16.8 1.6 14 2-15 9-26 (27)
9 d2fd6u3 g.7.1.3 (U:92-188) Uro 2.4 1.8E+02 0.013 23.0 0.1 20 190-209 42-61 (97)
10 d1sg1x1 g.24.1.1 (X:2-56) Low 2.4 1.7E+02 0.013 21.2 -0.1 22 196-217 20-41 (55)
No 1
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=71 Score=26.64 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=41.1
Q ss_pred cccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccccCCCCCcEEEEEEEcCCCCCccccccCCCCceEEEEE
Q 009225 300 YLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLY 379 (540)
Q Consensus 300 YlkDKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~~~~k~P~vfIVNiQVPg~P~slF~~~~DGeG~SlVlY 379 (540)
||.-|+|.-. ...++-|+-++.=.+-.++..|-.+..+|. .....|.-|++-|+=+. |-|.|
T Consensus 56 yL~gr~~~~~-~~qv~iP~p~~~sls~~~i~~~~~~~~~p~--~~~~~~~s~tLai~d~D---------------STIvY 117 (122)
T d2gw6a1 56 CLVGTEIEGE-GLQTVVPTPITASLSHNRIREILKASRKLQ--GDPDLPMSFTLAIVESD---------------STIVY 117 (122)
T ss_dssp EEEEESSTTC-CCCEEEEEETTCEEEHHHHHHHHHHHHHHT--TCSSCCCEEEEEEECTT---------------SCEEE
T ss_pred EEEcccccCC-CccEEEeeccccccCHHHHHHHHHhccCCc--CCcCccceEEEEEEcCC---------------CeEEE
Confidence 6666666544 345788888877777777777754432331 12235556666667666 66788
Q ss_pred EEeC
Q 009225 380 FKLN 383 (540)
Q Consensus 380 F~l~ 383 (540)
|+++
T Consensus 118 Yrmt 121 (122)
T d2gw6a1 118 YKLT 121 (122)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8875
No 2
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.73 E-value=1.4e+02 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=21.5
Q ss_pred EeEeecCccchhhHHHHHHHHhhCCceee
Q 009225 427 LGRVVNVEDLHLSAAERKLLQAYNEKPVL 455 (540)
Q Consensus 427 IP~VVnGpwl~l~aaer~l~qavngKPvL 455 (540)
|+.++||--+.+ +..=+++.+|+||+=
T Consensus 21 IG~i~NGAGlaM--aTmD~i~~~Gg~pAN 47 (148)
T d1eucb1 21 IACFVNGAGLAM--ATCDIIFLNGGKPAN 47 (148)
T ss_dssp EEEEESSHHHHH--HHHHHHHHTTCCBSE
T ss_pred EEEEecCCccch--hHHHHHHHcCCCeee
Confidence 899999976544 556788999999984
No 3
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.77 E-value=1.2e+02 Score=22.95 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=27.9
Q ss_pred CeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecCCCCCcccceeceEEecc
Q 009225 467 NYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRING 524 (540)
Q Consensus 467 NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteeELPErLLG~vRLn~ 524 (540)
.-+++.++..+ ..+.+++.. +||++||..+.+-|+.+ .-|+++
T Consensus 122 ~~v~~~v~~~N--~~S~rl~ek-----------~GF~~eg~~~~~~~~~~--~yr~~~ 164 (164)
T d2fsra1 122 PTLVSYVSPQN--RKSAAVAER-----------IGGTLDPLAPRSDPEDL--VYRYHQ 164 (164)
T ss_dssp SCEEEEECTTC--HHHHHHHHH-----------TTCEECTTSCCSSTTCE--EEEECC
T ss_pred eeEEEEECcCC--HHHHHHHHH-----------CCCEEeeeEcccCCCce--EEeeCC
Confidence 44566666665 334444433 58999999998888876 456653
No 4
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.53 E-value=1.9e+02 Score=24.24 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.1
Q ss_pred EeEeecCccchhhHHHHHHHHhhCCceee
Q 009225 427 LGRVVNVEDLHLSAAERKLLQAYNEKPVL 455 (540)
Q Consensus 427 IP~VVnGpwl~l~aaer~l~qavngKPvL 455 (540)
|+.++||--+.+ +.-=+++.+|+||+=
T Consensus 21 Ig~i~nGAGlam--aTmD~i~~~Gg~pAN 47 (150)
T d2nu7b1 21 IGCMVNGAGLAM--GTMDIVKLHGGEPAN 47 (150)
T ss_dssp EEEEESSHHHHH--HHHHHHHHTTCCBCE
T ss_pred EEEEEcCCccch--hhHHHHHHCCCCeeE
Confidence 889999976654 445678899999983
No 5
>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]}
Probab=3.29 E-value=2.9e+02 Score=20.81 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=20.8
Q ss_pred CcccceeceEEecccccCCccccCCC
Q 009225 511 ELPEQILCCIRINGIDYMNYHQLGHK 536 (540)
Q Consensus 511 ELPErLLG~vRLn~IDl~~A~~l~l~ 536 (540)
+-|=||||. ++.+++...+.|+.|.
T Consensus 86 ~~piRLlGV-~v~~l~~~~~~QlsL~ 110 (111)
T d1unnc_ 86 GRGVRLVGL-HVTLLDPQMERQLVLG 110 (111)
T ss_dssp TCCEEEEEE-EEECCCCCCCCBCCCC
T ss_pred CCCEeEEEE-EeecCCCCCcccCCCC
Confidence 347899997 8999999999998774
No 6
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.03 E-value=2.4e+02 Score=20.69 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=17.5
Q ss_pred CcceeeeC-------CCeEEEEEEccCch
Q 009225 458 PQHEFYLG-------ENYLEIDIDMHRFS 479 (540)
Q Consensus 458 ~q~~Yy~G-------~NYlEIDVDIhSFS 479 (540)
....||++ ..|.||..|=+|||
T Consensus 14 kNgryY~c~V~~~~~qtfyeV~FdDgS~s 42 (59)
T d2qqra1 14 KNGRFYQCEVVRLTTETFYEVNFDDGSFS 42 (59)
T ss_dssp TTSSEEEEEEEEEEEEEEEEEEETTSCEE
T ss_pred cCCcEEEEEEEEeeeEEEEEEEecCCCcc
Confidence 35578765 37999999999986
No 7
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.97 E-value=1.8e+02 Score=19.77 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=5.0
Q ss_pred ccccccC
Q 009225 202 DNCGIIP 208 (540)
Q Consensus 202 ~~~~~~~ 208 (540)
+|||++|
T Consensus 2 enCgsvp 8 (39)
T d2j5ha1 2 EHCGSIL 8 (39)
T ss_dssp CSSCCCC
T ss_pred Ccccccc
Confidence 5788766
No 8
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=2.70 E-value=3.2e+02 Score=16.84 Aligned_cols=14 Identities=43% Similarity=1.137 Sum_probs=9.7
Q ss_pred Cccc----cCCCcccccc
Q 009225 2 GACV----STPRGCVGGR 15 (540)
Q Consensus 2 ~~~~----~~~~~~~~~~ 15 (540)
|||- -.|+||.|-+
T Consensus 9 ggcpwgqncypegcsgpk 26 (27)
T d1ansa_ 9 GGCPWGQNCYPEGCSGPK 26 (27)
T ss_dssp TTCSSSCSSCSSCSSSSC
T ss_pred cCCccccccccCcccCCC
Confidence 6664 4688998864
No 9
>d2fd6u3 g.7.1.3 (U:92-188) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.41 E-value=1.8e+02 Score=23.05 Aligned_cols=20 Identities=40% Similarity=0.797 Sum_probs=12.0
Q ss_pred ccCCCCCCcCccccccccCC
Q 009225 190 VDEGSGKDEGLLDNCGIIPS 209 (540)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~ 209 (540)
.-|.+-++|+.+.-||.||.
T Consensus 42 ~~e~~~~de~~~rGCg~lpg 61 (97)
T d2fd6u3 42 GEEGRPKDDRHLRGCGYLPG 61 (97)
T ss_dssp -------CCSEEEEEEECTT
T ss_pred cccCCcccccccccCCCCCC
Confidence 34455779999999999994
No 10
>d1sg1x1 g.24.1.1 (X:2-56) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.37 E-value=1.7e+02 Score=21.21 Aligned_cols=22 Identities=36% Similarity=0.830 Sum_probs=19.0
Q ss_pred CCcCccccccccCCCCcccccc
Q 009225 196 KDEGLLDNCGIIPSNCLPCLAS 217 (540)
Q Consensus 196 ~~~~~~~~~~~~~~~cl~~~~~ 217 (540)
-.||+..-||.-.--|-|||-+
T Consensus 20 ~GeGV~~pCg~~~T~CepCld~ 41 (55)
T d1sg1x1 20 LGEGVAQPCGANQTVCEPCLDN 41 (55)
T ss_dssp TTEEEEECSSSSSCEEEECCTT
T ss_pred CCCceeeccCCCCceeeeccCC
Confidence 3689999999988889999983
Done!