Query 009226
Match_columns 539
No_of_seqs 379 out of 1918
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 21:58:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 2.7E-68 5.8E-73 556.0 34.7 373 19-443 1-375 (438)
2 KOG4405 GDP dissociation inhib 100.0 3.9E-68 8.5E-73 525.7 17.7 418 19-484 5-461 (547)
3 PTZ00363 rab-GDP dissociation 100.0 4E-61 8.7E-66 508.6 41.9 373 19-444 1-377 (443)
4 KOG1439 RAB proteins geranylge 100.0 5.3E-54 1.1E-58 427.3 25.6 370 20-443 2-375 (440)
5 COG5044 MRS6 RAB proteins gera 100.0 2.8E-51 6.2E-56 403.1 25.8 369 19-444 3-375 (434)
6 TIGR02734 crtI_fam phytoene de 100.0 3.8E-26 8.3E-31 248.8 31.1 389 25-482 1-427 (502)
7 COG1233 Phytoene dehydrogenase 99.9 1.9E-25 4.1E-30 241.5 25.9 260 20-336 1-279 (487)
8 TIGR02730 carot_isom carotene 99.9 1E-24 2.2E-29 236.9 31.3 387 23-481 1-427 (493)
9 TIGR02733 desat_CrtD C-3',4' d 99.9 1.7E-24 3.6E-29 235.3 31.5 383 23-481 2-427 (492)
10 TIGR00562 proto_IX_ox protopor 99.9 2E-22 4.3E-27 217.3 32.1 351 22-444 2-385 (462)
11 PRK07233 hypothetical protein; 99.9 5.4E-22 1.2E-26 211.8 32.1 347 24-444 1-355 (434)
12 PLN02576 protoporphyrinogen ox 99.9 8.8E-22 1.9E-26 214.2 32.3 292 19-376 9-332 (496)
13 PRK12416 protoporphyrinogen ox 99.9 1.7E-21 3.8E-26 210.1 29.2 325 23-422 2-357 (463)
14 PRK11883 protoporphyrinogen ox 99.9 4.3E-21 9.3E-26 206.0 30.0 325 24-423 2-352 (451)
15 PRK07208 hypothetical protein; 99.9 2.5E-20 5.4E-25 202.0 33.5 353 19-444 1-384 (479)
16 COG1232 HemY Protoporphyrinoge 99.9 1.3E-20 2.9E-25 197.6 28.8 346 24-445 2-372 (444)
17 TIGR02731 phytoene_desat phyto 99.9 5.9E-20 1.3E-24 197.7 33.1 294 24-378 1-315 (453)
18 PLN02612 phytoene desaturase 99.9 1.3E-19 2.8E-24 199.4 34.1 293 22-377 93-404 (567)
19 TIGR02732 zeta_caro_desat caro 99.8 5.6E-19 1.2E-23 190.6 26.4 268 24-342 1-289 (474)
20 PLN02487 zeta-carotene desatur 99.8 1.9E-18 4.1E-23 188.6 28.1 270 21-341 74-364 (569)
21 KOG4254 Phytoene desaturase [C 99.8 1.3E-19 2.8E-24 183.7 16.7 151 270-426 255-428 (561)
22 PLN02268 probable polyamine ox 99.8 3.5E-18 7.7E-23 182.9 21.0 273 23-379 1-294 (435)
23 TIGR03467 HpnE squalene-associ 99.8 5.2E-17 1.1E-21 172.4 28.2 276 36-376 1-287 (419)
24 PLN02676 polyamine oxidase 99.8 3.3E-17 7.1E-22 177.2 23.4 286 20-378 24-327 (487)
25 PLN02529 lysine-specific histo 99.8 2.6E-16 5.7E-21 175.3 30.7 279 21-377 159-447 (738)
26 PLN02328 lysine-specific histo 99.7 1.5E-15 3.4E-20 169.9 30.8 280 21-377 237-527 (808)
27 PLN02568 polyamine oxidase 99.7 2.2E-16 4.8E-21 172.2 23.3 103 269-376 232-339 (539)
28 PLN03000 amine oxidase 99.7 3.8E-15 8.1E-20 166.8 30.4 280 21-377 183-471 (881)
29 COG1231 Monoamine oxidase [Ami 99.7 8E-17 1.7E-21 165.8 14.8 99 271-377 201-300 (450)
30 PRK13977 myosin-cross-reactive 99.6 2.1E-14 4.6E-19 154.5 23.9 243 17-332 17-287 (576)
31 PLN02976 amine oxidase 99.6 9.5E-14 2.1E-18 159.6 22.9 105 269-378 926-1038(1713)
32 KOG0029 Amine oxidase [Seconda 99.6 2.5E-14 5.5E-19 153.7 16.1 111 272-389 212-323 (501)
33 KOG1276 Protoporphyrinogen oxi 99.6 1.9E-12 4.2E-17 131.6 26.1 245 22-323 11-293 (491)
34 PF01593 Amino_oxidase: Flavin 99.5 4.9E-14 1.1E-18 148.8 14.7 157 278-445 208-370 (450)
35 COG2907 Predicted NAD/FAD-bind 99.5 9.5E-12 2.1E-16 123.3 21.1 292 22-379 8-310 (447)
36 KOG0685 Flavin-containing amin 99.3 2.9E-10 6.2E-15 117.7 20.5 206 272-497 216-441 (498)
37 COG2081 Predicted flavoprotein 99.2 1E-10 2.2E-15 119.1 13.7 58 272-332 103-161 (408)
38 COG3349 Uncharacterized conser 99.2 1.4E-10 3E-15 122.2 14.4 251 24-331 2-268 (485)
39 TIGR00031 UDP-GALP_mutase UDP- 99.2 2E-10 4.2E-15 119.8 12.4 42 23-64 2-43 (377)
40 PF01266 DAO: FAD dependent ox 99.1 4.5E-10 9.8E-15 116.0 12.2 60 271-333 136-198 (358)
41 PF13450 NAD_binding_8: NAD(P) 99.1 8.6E-11 1.9E-15 92.1 4.3 42 27-68 1-42 (68)
42 PF03486 HI0933_like: HI0933-l 99.0 9.5E-10 2.1E-14 116.1 10.2 60 271-332 100-160 (409)
43 COG0579 Predicted dehydrogenas 98.9 1.6E-08 3.4E-13 106.3 15.7 62 270-333 141-206 (429)
44 COG0562 Glf UDP-galactopyranos 98.9 7E-09 1.5E-13 102.4 11.3 101 22-163 1-101 (374)
45 TIGR03329 Phn_aa_oxid putative 98.9 9.5E-08 2.1E-12 103.3 20.6 58 271-333 172-232 (460)
46 PRK11728 hydroxyglutarate oxid 98.9 3.1E-08 6.8E-13 104.7 15.5 59 271-333 138-199 (393)
47 TIGR01377 soxA_mon sarcosine o 98.8 6.6E-08 1.4E-12 101.5 14.7 58 271-332 134-194 (380)
48 PRK08274 tricarballylate dehyd 98.8 1.5E-07 3.3E-12 101.9 16.7 58 274-333 126-187 (466)
49 PRK12845 3-ketosteroid-delta-1 98.8 3.5E-07 7.6E-12 101.0 19.3 48 15-63 9-56 (564)
50 PRK11101 glpA sn-glycerol-3-ph 98.8 1.7E-07 3.7E-12 103.3 16.2 60 270-332 138-205 (546)
51 PRK06481 fumarate reductase fl 98.7 2.5E-07 5.5E-12 101.1 17.1 41 21-61 60-100 (506)
52 PF00890 FAD_binding_2: FAD bi 98.7 2.2E-07 4.8E-12 99.0 15.5 54 277-332 139-197 (417)
53 PRK00711 D-amino acid dehydrog 98.7 6.5E-07 1.4E-11 95.3 18.7 61 270-333 189-252 (416)
54 PRK11259 solA N-methyltryptoph 98.7 2.1E-07 4.6E-12 97.5 13.9 58 271-332 138-198 (376)
55 TIGR01373 soxB sarcosine oxida 98.7 9.6E-07 2.1E-11 93.8 17.8 61 271-333 172-235 (407)
56 PTZ00383 malate:quinone oxidor 98.6 8.2E-07 1.8E-11 96.3 17.0 61 270-333 198-268 (497)
57 PF01946 Thi4: Thi4 family; PD 98.6 3E-08 6.6E-13 93.7 4.0 43 21-63 16-58 (230)
58 COG1635 THI4 Ribulose 1,5-bisp 98.6 3.5E-08 7.5E-13 92.8 3.9 42 21-62 29-70 (262)
59 KOG2820 FAD-dependent oxidored 98.6 1.9E-06 4.1E-11 86.0 15.2 58 280-337 154-212 (399)
60 PRK01747 mnmC bifunctional tRN 98.5 1.1E-06 2.3E-11 99.4 15.1 59 271-333 397-458 (662)
61 COG0578 GlpA Glycerol-3-phosph 98.5 8.8E-07 1.9E-11 95.2 12.5 48 17-64 7-54 (532)
62 COG3380 Predicted NAD/FAD-depe 98.5 2.5E-07 5.4E-12 89.6 6.8 46 23-68 2-47 (331)
63 COG0644 FixC Dehydrogenases (f 98.5 1.4E-07 3.1E-12 99.9 5.5 43 21-63 2-44 (396)
64 PRK07573 sdhA succinate dehydr 98.5 3E-06 6.4E-11 95.1 16.0 40 21-60 34-73 (640)
65 PF06100 Strep_67kDa_ant: Stre 98.5 1.2E-05 2.5E-10 85.2 18.9 86 246-332 174-268 (500)
66 PRK12843 putative FAD-binding 98.4 1.5E-05 3.3E-10 88.6 20.6 43 21-63 15-57 (578)
67 TIGR00292 thiazole biosynthesi 98.4 2.9E-07 6.3E-12 91.3 5.3 41 21-61 20-60 (254)
68 PRK04176 ribulose-1,5-biphosph 98.4 3.6E-07 7.8E-12 90.9 5.2 40 21-60 24-63 (257)
69 PRK10157 putative oxidoreducta 98.4 4E-07 8.7E-12 97.5 5.7 40 21-60 4-43 (428)
70 PRK10015 oxidoreductase; Provi 98.3 4.8E-07 1E-11 96.9 5.5 40 21-60 4-43 (429)
71 PRK07364 2-octaprenyl-6-methox 98.3 8.1E-07 1.8E-11 94.5 6.0 45 13-57 9-53 (415)
72 PRK05249 soluble pyridine nucl 98.3 7.5E-07 1.6E-11 96.3 5.5 44 20-63 3-46 (461)
73 PRK07121 hypothetical protein; 98.3 1E-06 2.2E-11 96.1 6.5 42 21-62 19-60 (492)
74 PRK06115 dihydrolipoamide dehy 98.3 6.9E-07 1.5E-11 96.7 5.0 44 20-63 1-44 (466)
75 PF01494 FAD_binding_3: FAD bi 98.3 7.8E-07 1.7E-11 91.7 4.6 36 22-57 1-36 (356)
76 TIGR00275 flavoprotein, HI0933 98.2 1E-05 2.2E-10 85.9 13.0 65 272-340 97-163 (400)
77 PRK08010 pyridine nucleotide-d 98.2 9E-07 2E-11 95.1 5.1 44 20-63 1-45 (441)
78 PLN02172 flavin-containing mon 98.2 1E-06 2.3E-11 94.9 5.4 43 21-63 9-51 (461)
79 PF12831 FAD_oxidored: FAD dep 98.2 8.8E-07 1.9E-11 94.8 4.8 40 24-63 1-40 (428)
80 PLN00093 geranylgeranyl diphos 98.2 1.2E-06 2.7E-11 94.1 5.8 41 15-55 32-72 (450)
81 PRK07251 pyridine nucleotide-d 98.2 1.2E-06 2.6E-11 94.2 5.1 43 20-62 1-44 (438)
82 TIGR02485 CobZ_N-term precorri 98.2 1.7E-05 3.6E-10 85.1 14.0 61 272-332 116-177 (432)
83 COG2072 TrkA Predicted flavopr 98.2 1.4E-06 3.1E-11 93.4 5.3 50 19-68 5-55 (443)
84 TIGR02032 GG-red-SF geranylger 98.2 1.5E-06 3.3E-11 87.4 5.2 37 23-59 1-37 (295)
85 PRK12266 glpD glycerol-3-phosp 98.2 1.6E-06 3.5E-11 94.8 5.7 42 20-61 4-45 (508)
86 PRK06292 dihydrolipoamide dehy 98.2 1.7E-06 3.7E-11 93.5 5.3 43 20-63 1-43 (460)
87 PRK06116 glutathione reductase 98.2 1.7E-06 3.7E-11 93.3 5.0 42 21-63 3-44 (450)
88 PRK06467 dihydrolipoamide dehy 98.2 2E-06 4.3E-11 93.3 5.4 43 20-62 2-44 (471)
89 PRK07494 2-octaprenyl-6-methox 98.2 2.1E-06 4.5E-11 90.6 5.4 39 19-57 4-42 (388)
90 PRK08013 oxidoreductase; Provi 98.1 2.2E-06 4.8E-11 90.9 5.2 38 20-57 1-38 (400)
91 TIGR01350 lipoamide_DH dihydro 98.1 2.2E-06 4.7E-11 92.7 5.2 41 22-63 1-41 (461)
92 PTZ00058 glutathione reductase 98.1 2.8E-06 6.1E-11 93.6 6.0 52 11-63 36-88 (561)
93 PRK06370 mercuric reductase; V 98.1 2.6E-06 5.6E-11 92.2 5.6 44 19-63 2-45 (463)
94 PRK09126 hypothetical protein; 98.1 2.3E-06 5E-11 90.3 5.1 37 21-57 2-38 (392)
95 PRK13369 glycerol-3-phosphate 98.1 2.6E-06 5.7E-11 93.1 5.6 44 19-62 3-46 (502)
96 PRK05192 tRNA uridine 5-carbox 98.1 2.8E-06 6.1E-11 93.1 5.1 41 20-60 2-43 (618)
97 TIGR01424 gluta_reduc_2 glutat 98.1 2.6E-06 5.6E-11 91.8 4.8 41 22-63 2-42 (446)
98 PRK08849 2-octaprenyl-3-methyl 98.1 2.8E-06 6.2E-11 89.6 5.0 36 20-55 1-36 (384)
99 PRK12409 D-amino acid dehydrog 98.1 3.2E-06 7E-11 89.9 5.4 39 23-61 2-40 (410)
100 TIGR01421 gluta_reduc_1 glutat 98.1 2.8E-06 6.2E-11 91.5 5.0 41 21-62 1-41 (450)
101 PRK06416 dihydrolipoamide dehy 98.1 2.8E-06 6E-11 91.9 5.0 42 21-63 3-44 (462)
102 PF13738 Pyr_redox_3: Pyridine 98.1 2.4E-06 5.2E-11 81.4 3.8 38 26-63 1-39 (203)
103 PRK07818 dihydrolipoamide dehy 98.1 3.7E-06 8E-11 91.1 5.5 43 20-63 2-44 (466)
104 TIGR02023 BchP-ChlP geranylger 98.1 4.1E-06 8.8E-11 88.5 5.7 32 23-54 1-32 (388)
105 PRK08773 2-octaprenyl-3-methyl 98.1 3.7E-06 8.1E-11 88.8 5.4 51 279-332 113-163 (392)
106 PRK08850 2-octaprenyl-6-methox 98.1 3.3E-06 7.2E-11 89.7 4.9 36 19-54 1-36 (405)
107 TIGR03378 glycerol3P_GlpB glyc 98.1 9.8E-05 2.1E-09 77.9 15.7 56 279-336 263-321 (419)
108 PRK05976 dihydrolipoamide dehy 98.1 3.9E-06 8.4E-11 91.1 5.4 42 21-63 3-44 (472)
109 TIGR01292 TRX_reduct thioredox 98.0 4.2E-06 9.1E-11 84.6 4.9 40 23-63 1-40 (300)
110 PF00732 GMC_oxred_N: GMC oxid 98.0 3.4E-06 7.4E-11 85.5 4.1 39 23-61 1-40 (296)
111 PRK06184 hypothetical protein; 98.0 4.9E-06 1.1E-10 91.0 5.6 38 20-57 1-38 (502)
112 TIGR02028 ChlP geranylgeranyl 98.0 4.7E-06 1E-10 88.4 5.2 37 23-59 1-37 (398)
113 PRK12837 3-ketosteroid-delta-1 98.0 4.8E-06 1E-10 91.2 5.2 40 21-61 6-45 (513)
114 PRK07045 putative monooxygenas 98.0 4.8E-06 1E-10 87.9 5.1 52 280-332 107-159 (388)
115 PRK08020 ubiF 2-octaprenyl-3-m 98.0 4.6E-06 1E-10 88.0 4.9 36 20-55 3-38 (391)
116 PRK14694 putative mercuric red 98.0 5.2E-06 1.1E-10 90.0 5.4 44 19-63 3-46 (468)
117 PLN02661 Putative thiazole syn 98.0 4.9E-06 1.1E-10 85.4 4.8 38 22-59 92-130 (357)
118 PRK07236 hypothetical protein; 98.0 5.1E-06 1.1E-10 87.7 5.1 37 20-56 4-40 (386)
119 TIGR01813 flavo_cyto_c flavocy 98.0 5.1E-06 1.1E-10 89.3 5.1 53 279-332 130-186 (439)
120 TIGR01988 Ubi-OHases Ubiquinon 98.0 4.7E-06 1E-10 87.5 4.8 51 279-332 106-157 (385)
121 PLN02463 lycopene beta cyclase 98.0 6.7E-06 1.5E-10 88.2 6.0 45 11-55 17-61 (447)
122 PRK13748 putative mercuric red 98.0 4.9E-06 1.1E-10 92.3 5.1 42 21-63 97-138 (561)
123 PRK12834 putative FAD-binding 98.0 5.6E-06 1.2E-10 91.5 5.5 42 21-62 3-46 (549)
124 PRK08163 salicylate hydroxylas 98.0 5.4E-06 1.2E-10 87.7 5.2 37 21-57 3-39 (396)
125 PRK07608 ubiquinone biosynthes 98.0 5.4E-06 1.2E-10 87.3 5.2 37 22-58 5-41 (388)
126 PRK06327 dihydrolipoamide dehy 98.0 5.8E-06 1.3E-10 89.8 5.4 43 21-63 3-51 (475)
127 COG3573 Predicted oxidoreducta 98.0 6.1E-06 1.3E-10 82.1 5.0 41 20-60 3-45 (552)
128 KOG1399 Flavin-containing mono 98.0 5.3E-06 1.1E-10 88.4 5.0 45 20-64 4-48 (448)
129 TIGR01790 carotene-cycl lycope 98.0 5.6E-06 1.2E-10 87.3 5.0 37 24-60 1-37 (388)
130 TIGR03315 Se_ygfK putative sel 98.0 7.8E-06 1.7E-10 94.7 6.4 44 20-63 535-578 (1012)
131 PRK12842 putative succinate de 98.0 6.7E-06 1.5E-10 91.4 5.7 44 20-63 7-50 (574)
132 PRK05714 2-octaprenyl-3-methyl 98.0 5.9E-06 1.3E-10 87.7 4.7 53 279-334 112-165 (405)
133 COG1148 HdrA Heterodisulfide r 98.0 6E-06 1.3E-10 85.9 4.5 44 22-65 124-167 (622)
134 PRK12831 putative oxidoreducta 98.0 9.2E-06 2E-10 87.9 6.1 46 17-62 135-180 (464)
135 TIGR03143 AhpF_homolog putativ 98.0 7.2E-06 1.6E-10 90.7 5.3 42 21-63 3-44 (555)
136 COG0665 DadA Glycine/D-amino a 98.0 8E-06 1.7E-10 85.8 5.4 60 270-333 144-207 (387)
137 PLN02985 squalene monooxygenas 98.0 9.3E-06 2E-10 88.8 6.0 40 17-56 38-77 (514)
138 PRK06834 hypothetical protein; 98.0 8E-06 1.7E-10 88.9 5.5 37 20-56 1-37 (488)
139 PRK06185 hypothetical protein; 98.0 7.4E-06 1.6E-10 87.0 5.0 37 20-56 4-40 (407)
140 TIGR02053 MerA mercuric reduct 98.0 7.6E-06 1.6E-10 88.6 5.1 40 23-63 1-40 (463)
141 KOG1298 Squalene monooxygenase 98.0 7.4E-06 1.6E-10 83.0 4.5 36 19-54 42-77 (509)
142 PRK05732 2-octaprenyl-6-methox 98.0 7.3E-06 1.6E-10 86.5 4.8 35 20-54 1-38 (395)
143 TIGR03364 HpnW_proposed FAD de 97.9 9.3E-06 2E-10 84.9 5.4 34 23-56 1-34 (365)
144 PRK07057 sdhA succinate dehydr 97.9 9.6E-06 2.1E-10 90.3 5.8 46 16-61 6-51 (591)
145 PRK14727 putative mercuric red 97.9 9.4E-06 2E-10 88.2 5.4 46 18-63 12-57 (479)
146 KOG2844 Dimethylglycine dehydr 97.9 0.00013 2.7E-09 79.0 13.6 58 271-331 176-236 (856)
147 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 8E-06 1.7E-10 86.4 4.6 35 22-56 2-36 (390)
148 PRK12844 3-ketosteroid-delta-1 97.9 9.6E-06 2.1E-10 89.7 5.3 41 21-61 5-45 (557)
149 PLN02697 lycopene epsilon cycl 97.9 1.3E-05 2.8E-10 87.6 6.2 39 19-57 105-143 (529)
150 TIGR01984 UbiH 2-polyprenyl-6- 97.9 8.9E-06 1.9E-10 85.5 4.6 53 279-334 105-159 (382)
151 PRK06847 hypothetical protein; 97.9 1.3E-05 2.7E-10 84.1 5.6 51 279-332 107-157 (375)
152 PRK09853 putative selenate red 97.9 1.5E-05 3.3E-10 92.0 6.4 45 19-63 536-580 (1019)
153 PRK07190 hypothetical protein; 97.9 1.1E-05 2.4E-10 87.7 5.2 38 20-57 3-40 (487)
154 PF04820 Trp_halogenase: Trypt 97.9 8.8E-05 1.9E-09 80.0 12.0 53 279-333 154-207 (454)
155 COG0492 TrxB Thioredoxin reduc 97.9 1.2E-05 2.5E-10 81.8 4.8 46 20-65 1-46 (305)
156 PLN02464 glycerol-3-phosphate 97.9 1.2E-05 2.7E-10 89.9 5.4 40 20-59 69-108 (627)
157 PRK12835 3-ketosteroid-delta-1 97.9 1.2E-05 2.5E-10 89.4 5.1 40 21-60 10-49 (584)
158 PRK06617 2-octaprenyl-6-methox 97.9 1.1E-05 2.4E-10 84.8 4.6 33 23-55 2-34 (374)
159 PTZ00052 thioredoxin reductase 97.9 1.2E-05 2.5E-10 87.9 4.9 51 280-333 223-273 (499)
160 PTZ00367 squalene epoxidase; P 97.9 1.3E-05 2.8E-10 88.4 5.2 37 19-55 30-66 (567)
161 COG0654 UbiH 2-polyprenyl-6-me 97.9 1.2E-05 2.5E-10 85.1 4.7 55 277-334 102-159 (387)
162 PRK06753 hypothetical protein; 97.9 1.2E-05 2.6E-10 84.3 4.7 35 23-57 1-35 (373)
163 COG1249 Lpd Pyruvate/2-oxoglut 97.9 1.4E-05 2.9E-10 85.6 5.1 45 20-64 2-46 (454)
164 PRK08641 sdhA succinate dehydr 97.9 1.4E-05 3.1E-10 88.9 5.3 40 21-60 2-41 (589)
165 PRK06126 hypothetical protein; 97.9 1.5E-05 3.3E-10 88.1 5.4 38 19-56 4-41 (545)
166 PRK12779 putative bifunctional 97.9 1.6E-05 3.4E-10 92.7 5.8 43 20-62 304-346 (944)
167 PRK12769 putative oxidoreducta 97.9 1.9E-05 4E-10 89.2 6.1 44 20-63 325-368 (654)
168 PRK08958 sdhA succinate dehydr 97.9 1.6E-05 3.6E-10 88.4 5.5 43 18-60 3-45 (588)
169 PRK08243 4-hydroxybenzoate 3-m 97.8 1.4E-05 2.9E-10 84.7 4.6 35 22-56 2-36 (392)
170 TIGR01989 COQ6 Ubiquinone bios 97.8 1.4E-05 3E-10 85.9 4.7 34 23-56 1-38 (437)
171 PRK07803 sdhA succinate dehydr 97.8 1.6E-05 3.6E-10 89.0 5.5 40 20-59 6-45 (626)
172 PLN02507 glutathione reductase 97.8 1.6E-05 3.5E-10 86.7 5.3 53 279-334 244-296 (499)
173 PRK09078 sdhA succinate dehydr 97.8 1.7E-05 3.6E-10 88.5 5.4 44 17-60 7-50 (598)
174 PRK08132 FAD-dependent oxidore 97.8 2.2E-05 4.7E-10 86.9 6.2 45 21-65 22-68 (547)
175 PRK08244 hypothetical protein; 97.8 1.6E-05 3.4E-10 86.8 5.0 36 22-57 2-37 (493)
176 PRK07538 hypothetical protein; 97.8 1.6E-05 3.4E-10 84.7 4.8 35 23-57 1-35 (413)
177 PRK07843 3-ketosteroid-delta-1 97.8 2.1E-05 4.5E-10 87.1 5.8 42 21-62 6-47 (557)
178 TIGR01789 lycopene_cycl lycope 97.8 1.8E-05 3.9E-10 83.1 5.0 37 24-60 1-39 (370)
179 PRK07333 2-octaprenyl-6-methox 97.8 1.6E-05 3.4E-10 84.3 4.6 51 279-332 111-161 (403)
180 PRK07804 L-aspartate oxidase; 97.8 2.2E-05 4.8E-10 86.6 5.9 40 21-60 15-54 (541)
181 TIGR01316 gltA glutamate synth 97.8 2.4E-05 5.1E-10 84.4 6.0 44 19-62 130-173 (449)
182 PRK06183 mhpA 3-(3-hydroxyphen 97.8 2E-05 4.3E-10 87.0 5.5 41 20-60 8-48 (538)
183 PRK12809 putative oxidoreducta 97.8 2.4E-05 5.3E-10 88.0 6.3 47 16-62 304-350 (639)
184 PRK11445 putative oxidoreducta 97.8 1.7E-05 3.6E-10 82.7 4.6 35 22-57 1-35 (351)
185 PRK06452 sdhA succinate dehydr 97.8 2.1E-05 4.4E-10 87.3 5.4 52 279-332 136-192 (566)
186 PRK12839 hypothetical protein; 97.8 2.3E-05 4.9E-10 86.9 5.7 43 21-63 7-49 (572)
187 TIGR01320 mal_quin_oxido malat 97.8 1.8E-05 3.9E-10 85.9 4.5 62 270-333 166-235 (483)
188 PLN02852 ferredoxin-NADP+ redu 97.8 3E-05 6.6E-10 83.8 6.2 47 17-63 21-69 (491)
189 PTZ00139 Succinate dehydrogena 97.8 2.3E-05 5E-10 87.6 5.4 59 273-332 159-223 (617)
190 KOG2614 Kynurenine 3-monooxyge 97.8 2.5E-05 5.5E-10 80.4 5.1 43 22-64 2-44 (420)
191 TIGR01423 trypano_reduc trypan 97.8 2.3E-05 5.1E-10 85.1 5.0 53 279-333 231-283 (486)
192 PRK06134 putative FAD-binding 97.8 3E-05 6.4E-10 86.3 5.9 45 19-63 9-53 (581)
193 PRK05257 malate:quinone oxidor 97.8 2.2E-05 4.8E-10 85.4 4.8 43 20-62 3-47 (494)
194 TIGR01372 soxA sarcosine oxida 97.8 2.7E-05 5.8E-10 91.7 5.8 43 21-63 162-204 (985)
195 PF05834 Lycopene_cycl: Lycope 97.8 2.4E-05 5.3E-10 82.2 4.9 34 24-57 1-36 (374)
196 PRK12775 putative trifunctiona 97.8 2.6E-05 5.7E-10 91.5 5.6 43 20-62 428-470 (1006)
197 PRK07395 L-aspartate oxidase; 97.8 2.4E-05 5.2E-10 86.4 5.0 42 18-60 5-46 (553)
198 PRK07588 hypothetical protein; 97.8 2.3E-05 5E-10 82.8 4.7 34 23-56 1-34 (391)
199 PRK12810 gltD glutamate syntha 97.8 3.2E-05 6.9E-10 83.9 5.9 43 20-62 141-183 (471)
200 PRK06175 L-aspartate oxidase; 97.8 2.5E-05 5.3E-10 83.8 4.9 58 273-332 121-183 (433)
201 PRK12778 putative bifunctional 97.8 3.2E-05 7E-10 88.7 6.1 43 20-62 429-471 (752)
202 PLN00128 Succinate dehydrogena 97.7 2.8E-05 6E-10 87.1 5.2 41 21-61 49-89 (635)
203 PLN02546 glutathione reductase 97.7 2.9E-05 6.4E-10 85.6 5.2 44 20-63 77-129 (558)
204 PRK15317 alkyl hydroperoxide r 97.7 3.1E-05 6.7E-10 85.0 5.4 41 20-62 209-249 (517)
205 PF00743 FMO-like: Flavin-bind 97.7 2.7E-05 5.8E-10 85.3 4.7 41 23-63 2-42 (531)
206 PRK02106 choline dehydrogenase 97.7 3.2E-05 6.8E-10 85.8 5.3 37 20-56 3-40 (560)
207 PF06039 Mqo: Malate:quinone o 97.7 0.00085 1.9E-08 70.6 15.1 61 272-334 170-240 (488)
208 PRK05945 sdhA succinate dehydr 97.7 3E-05 6.4E-10 86.2 4.6 59 272-332 127-191 (575)
209 PRK05335 tRNA (uracil-5-)-meth 97.7 3.5E-05 7.6E-10 81.2 4.7 37 23-59 3-39 (436)
210 TIGR01812 sdhA_frdA_Gneg succi 97.7 3.5E-05 7.6E-10 85.6 5.0 51 280-332 130-185 (566)
211 PRK05868 hypothetical protein; 97.7 3.8E-05 8.3E-10 80.7 5.1 35 23-57 2-36 (372)
212 PLN02815 L-aspartate oxidase 97.7 3.6E-05 7.8E-10 85.5 5.0 38 22-60 29-66 (594)
213 TIGR02462 pyranose_ox pyranose 97.7 4.1E-05 8.9E-10 83.7 5.2 39 23-61 1-39 (544)
214 PRK10262 thioredoxin reductase 97.7 4E-05 8.6E-10 78.8 4.8 42 21-63 5-46 (321)
215 PTZ00153 lipoamide dehydrogena 97.7 4.5E-05 9.8E-10 85.4 5.5 43 21-63 115-158 (659)
216 PRK06069 sdhA succinate dehydr 97.7 4.4E-05 9.5E-10 85.0 5.2 41 21-61 4-47 (577)
217 PRK11749 dihydropyrimidine deh 97.7 6.4E-05 1.4E-09 81.2 6.4 43 20-62 138-180 (457)
218 TIGR01318 gltD_gamma_fam gluta 97.7 6E-05 1.3E-09 81.6 6.1 43 20-62 139-181 (467)
219 PRK08626 fumarate reductase fl 97.7 4.3E-05 9.3E-10 86.0 5.1 52 279-332 158-214 (657)
220 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 4.1E-05 9E-10 81.0 4.6 38 24-61 2-39 (433)
221 PRK08294 phenol 2-monooxygenas 97.7 4.1E-05 8.8E-10 86.0 4.9 46 20-65 30-78 (634)
222 PRK06475 salicylate hydroxylas 97.7 4.7E-05 1E-09 80.8 5.1 35 23-57 3-37 (400)
223 TIGR00551 nadB L-aspartate oxi 97.6 4.8E-05 1E-09 82.9 5.0 52 279-332 128-183 (488)
224 PRK06996 hypothetical protein; 97.6 5E-05 1.1E-09 80.5 4.9 40 17-56 6-49 (398)
225 TIGR03140 AhpF alkyl hydropero 97.6 5.5E-05 1.2E-09 83.0 5.4 41 20-62 210-250 (515)
226 PTZ00306 NADH-dependent fumara 97.6 6.1E-05 1.3E-09 90.1 6.1 43 20-62 407-449 (1167)
227 TIGR03219 salicylate_mono sali 97.6 5.5E-05 1.2E-09 80.6 5.1 37 24-60 2-39 (414)
228 PRK06854 adenylylsulfate reduc 97.6 5.6E-05 1.2E-09 84.5 5.1 39 21-59 10-50 (608)
229 PRK08071 L-aspartate oxidase; 97.6 5.7E-05 1.2E-09 82.7 5.0 40 21-61 2-41 (510)
230 PLN02927 antheraxanthin epoxid 97.6 5.5E-05 1.2E-09 84.3 4.9 36 20-55 79-114 (668)
231 PRK12814 putative NADPH-depend 97.6 6E-05 1.3E-09 85.0 5.3 42 21-62 192-233 (652)
232 PRK13339 malate:quinone oxidor 97.6 6.1E-05 1.3E-09 81.7 5.0 42 21-62 5-48 (497)
233 PF01134 GIDA: Glucose inhibit 97.6 4.6E-05 1E-09 79.5 3.9 51 281-333 97-147 (392)
234 TIGR01438 TGR thioredoxin and 97.5 8.1E-05 1.8E-09 81.0 5.1 42 22-63 2-51 (484)
235 PRK08275 putative oxidoreducta 97.5 7.8E-05 1.7E-09 82.5 5.0 53 279-332 137-194 (554)
236 PRK06263 sdhA succinate dehydr 97.5 7.6E-05 1.6E-09 82.5 4.8 53 279-332 134-191 (543)
237 COG3075 GlpB Anaerobic glycero 97.5 7.6E-05 1.6E-09 74.5 4.1 56 280-337 259-317 (421)
238 PRK09231 fumarate reductase fl 97.5 8.7E-05 1.9E-09 82.6 4.9 41 21-61 3-45 (582)
239 TIGR01317 GOGAT_sm_gam glutama 97.5 0.00013 2.9E-09 79.4 6.2 42 21-62 142-183 (485)
240 COG1053 SdhA Succinate dehydro 97.5 0.0001 2.3E-09 81.0 5.3 46 18-63 2-47 (562)
241 PRK05329 anaerobic glycerol-3- 97.5 9.9E-05 2.1E-09 78.5 4.9 51 280-332 260-312 (422)
242 KOG2853 Possible oxidoreductas 97.5 8.8E-05 1.9E-09 74.2 4.1 47 21-67 85-144 (509)
243 PRK08401 L-aspartate oxidase; 97.5 0.0001 2.2E-09 79.9 5.1 50 279-332 120-169 (466)
244 PRK09077 L-aspartate oxidase; 97.5 0.00011 2.4E-09 81.0 5.0 40 20-60 6-45 (536)
245 TIGR01176 fum_red_Fp fumarate 97.5 0.0001 2.2E-09 81.9 4.8 40 22-61 3-44 (580)
246 PRK08205 sdhA succinate dehydr 97.5 0.00012 2.6E-09 81.5 5.2 53 279-332 140-200 (583)
247 KOG0399 Glutamate synthase [Am 97.5 0.00013 2.8E-09 82.4 5.1 49 15-63 1778-1826(2142)
248 PF07992 Pyr_redox_2: Pyridine 97.4 0.00014 3.1E-09 68.9 4.7 33 24-56 1-33 (201)
249 KOG2415 Electron transfer flav 97.4 0.00012 2.7E-09 75.0 4.1 57 21-77 75-144 (621)
250 PRK06912 acoL dihydrolipoamide 97.4 0.00016 3.4E-09 78.3 4.9 39 24-63 2-40 (458)
251 COG2303 BetA Choline dehydroge 97.4 0.00014 3.1E-09 80.0 4.6 35 20-54 5-39 (542)
252 COG0493 GltD NADPH-dependent g 97.4 0.00022 4.7E-09 76.5 5.4 45 19-63 120-164 (457)
253 PRK12770 putative glutamate sy 97.3 0.00023 5.1E-09 74.2 5.4 41 22-62 18-58 (352)
254 PF00070 Pyr_redox: Pyridine n 97.3 0.00033 7.2E-09 56.4 5.0 34 25-58 2-35 (80)
255 PRK06567 putative bifunctional 97.3 0.00029 6.4E-09 80.8 6.3 43 19-61 380-422 (1028)
256 PRK12771 putative glutamate sy 97.3 0.00028 6E-09 78.4 5.8 42 21-62 136-177 (564)
257 TIGR00136 gidA glucose-inhibit 97.3 0.00027 5.8E-09 77.7 5.1 38 23-60 1-38 (617)
258 TIGR02061 aprA adenosine phosp 97.3 0.00027 5.8E-09 78.8 5.1 34 24-57 1-38 (614)
259 PRK07512 L-aspartate oxidase; 97.3 0.00023 5E-09 78.1 4.2 52 279-332 136-191 (513)
260 PRK07846 mycothione reductase; 97.3 0.00028 6E-09 76.2 4.8 40 22-64 1-40 (451)
261 TIGR01810 betA choline dehydro 97.2 0.00024 5.3E-09 78.3 4.3 33 24-56 1-34 (532)
262 TIGR03452 mycothione_red mycot 97.2 0.00029 6.3E-09 76.0 4.7 40 22-64 2-41 (452)
263 PRK13984 putative oxidoreducta 97.2 0.00041 8.9E-09 77.7 5.7 43 20-62 281-323 (604)
264 PLN02785 Protein HOTHEAD 97.2 0.00047 1E-08 76.6 6.0 36 20-56 53-88 (587)
265 PTZ00188 adrenodoxin reductase 97.2 0.00047 1E-08 74.0 5.7 43 21-63 38-81 (506)
266 TIGR01811 sdhA_Bsu succinate d 97.2 0.00029 6.2E-09 78.7 4.3 36 25-60 1-36 (603)
267 PRK13800 putative oxidoreducta 97.2 0.00046 9.9E-09 80.7 5.9 36 21-56 12-47 (897)
268 PRK08255 salicylyl-CoA 5-hydro 97.2 0.00036 7.8E-09 80.2 4.8 35 23-57 1-37 (765)
269 KOG1335 Dihydrolipoamide dehyd 97.2 0.00034 7.4E-09 71.2 4.0 43 21-63 38-80 (506)
270 PRK07845 flavoprotein disulfid 97.2 0.00042 9.1E-09 75.1 5.0 53 279-334 218-270 (466)
271 COG0445 GidA Flavin-dependent 97.1 0.00043 9.3E-09 73.7 3.9 35 20-54 2-36 (621)
272 KOG2665 Predicted FAD-dependen 96.7 0.0012 2.5E-08 65.8 3.4 45 17-61 43-89 (453)
273 KOG2404 Fumarate reductase, fl 96.7 0.0018 3.9E-08 64.7 4.4 39 24-62 11-49 (477)
274 KOG2311 NAD/FAD-utilizing prot 96.7 0.0018 3.8E-08 67.8 4.4 38 17-54 23-60 (679)
275 COG0029 NadB Aspartate oxidase 96.6 0.002 4.3E-08 68.2 4.3 33 24-57 9-41 (518)
276 PRK09754 phenylpropionate diox 96.5 0.0029 6.4E-08 67.0 5.1 52 280-335 187-238 (396)
277 KOG1238 Glucose dehydrogenase/ 96.5 0.0031 6.7E-08 68.8 5.2 39 19-57 54-93 (623)
278 PRK09897 hypothetical protein; 96.5 0.0028 6.2E-08 69.4 4.9 38 23-60 2-42 (534)
279 PRK09564 coenzyme A disulfide 96.4 0.0032 7E-08 67.7 4.4 53 279-335 191-243 (444)
280 COG4716 Myosin-crossreactive a 96.4 0.032 7E-07 57.0 10.9 43 21-63 21-67 (587)
281 PTZ00318 NADH dehydrogenase-li 96.3 0.0044 9.6E-08 66.3 5.1 49 280-335 229-277 (424)
282 KOG4716 Thioredoxin reductase 96.3 0.0034 7.3E-08 63.1 3.7 34 20-53 17-50 (503)
283 COG0446 HcaD Uncharacterized N 96.2 0.0047 1E-07 65.0 4.5 40 23-62 137-176 (415)
284 PRK13512 coenzyme A disulfide 96.0 0.0073 1.6E-07 64.9 4.7 50 279-335 189-238 (438)
285 COG1206 Gid NAD(FAD)-utilizing 96.0 0.0081 1.8E-07 60.3 4.5 40 22-61 3-42 (439)
286 KOG3855 Monooxygenase involved 95.9 0.0085 1.8E-07 62.0 4.6 41 15-55 29-73 (481)
287 TIGR02352 thiamin_ThiO glycine 95.8 0.031 6.7E-07 57.3 8.0 60 271-333 126-188 (337)
288 KOG2960 Protein involved in th 95.7 0.0036 7.9E-08 58.9 0.8 40 22-61 76-117 (328)
289 KOG0405 Pyridine nucleotide-di 95.5 0.016 3.5E-07 58.7 4.5 43 21-63 19-61 (478)
290 PF03721 UDPG_MGDP_dh_N: UDP-g 95.3 0.017 3.8E-07 54.4 4.1 33 24-56 2-34 (185)
291 PF13454 NAD_binding_9: FAD-NA 95.1 0.025 5.5E-07 51.7 4.1 31 26-56 1-36 (156)
292 TIGR03169 Nterm_to_SelD pyridi 95.0 0.025 5.4E-07 59.1 4.5 50 280-336 192-241 (364)
293 KOG0042 Glycerol-3-phosphate d 95.0 0.012 2.7E-07 62.6 2.1 38 22-59 67-104 (680)
294 COG2509 Uncharacterized FAD-de 94.8 0.079 1.7E-06 55.8 7.3 61 274-336 165-228 (486)
295 PF02737 3HCDH_N: 3-hydroxyacy 94.8 0.036 7.8E-07 52.0 4.4 32 25-56 2-33 (180)
296 COG1252 Ndh NADH dehydrogenase 94.7 0.037 8E-07 58.3 4.8 46 279-331 209-255 (405)
297 KOG2852 Possible oxidoreductas 94.7 0.021 4.5E-07 56.5 2.5 43 20-62 8-56 (380)
298 PRK01438 murD UDP-N-acetylmura 94.6 0.049 1.1E-06 59.2 5.7 36 21-56 15-50 (480)
299 PRK09754 phenylpropionate diox 94.6 0.04 8.6E-07 58.4 4.6 39 23-61 145-183 (396)
300 PF01210 NAD_Gly3P_dh_N: NAD-d 94.5 0.045 9.7E-07 50.1 4.2 32 24-55 1-32 (157)
301 COG3634 AhpF Alkyl hydroperoxi 94.3 0.027 5.8E-07 57.1 2.5 39 21-61 210-248 (520)
302 COG4529 Uncharacterized protei 94.1 0.063 1.4E-06 57.0 4.8 40 22-62 1-44 (474)
303 KOG1800 Ferredoxin/adrenodoxin 94.0 0.07 1.5E-06 54.9 4.8 42 22-63 20-63 (468)
304 TIGR03197 MnmC_Cterm tRNA U-34 94.0 0.12 2.6E-06 54.4 6.7 60 270-333 123-185 (381)
305 PRK04965 NADH:flavorubredoxin 93.9 0.075 1.6E-06 55.8 5.0 53 280-335 184-236 (377)
306 PF07156 Prenylcys_lyase: Pren 93.9 0.35 7.5E-06 50.7 9.8 114 206-336 68-185 (368)
307 PRK04965 NADH:flavorubredoxin 93.9 0.073 1.6E-06 55.9 4.8 38 23-60 142-179 (377)
308 PF13434 K_oxygenase: L-lysine 93.8 0.042 9.2E-07 57.0 2.9 35 22-56 2-37 (341)
309 PRK06129 3-hydroxyacyl-CoA deh 93.7 0.065 1.4E-06 54.8 4.1 33 24-56 4-36 (308)
310 PRK06249 2-dehydropantoate 2-r 93.7 0.091 2E-06 53.8 5.1 36 20-55 3-38 (313)
311 PF02558 ApbA: Ketopantoate re 93.5 0.099 2.1E-06 47.1 4.5 31 25-55 1-31 (151)
312 PRK02705 murD UDP-N-acetylmura 93.5 0.084 1.8E-06 57.1 4.6 34 24-57 2-35 (459)
313 PRK07251 pyridine nucleotide-d 93.4 0.1 2.2E-06 56.1 5.2 38 23-60 158-195 (438)
314 PRK05976 dihydrolipoamide dehy 93.4 0.089 1.9E-06 57.1 4.7 37 23-59 181-217 (472)
315 TIGR01350 lipoamide_DH dihydro 93.2 0.1 2.2E-06 56.4 4.8 37 23-59 171-207 (461)
316 PRK08293 3-hydroxybutyryl-CoA 92.9 0.13 2.8E-06 52.0 4.6 33 23-55 4-36 (287)
317 TIGR03862 flavo_PP4765 unchara 92.8 0.55 1.2E-05 49.3 9.3 57 271-332 77-135 (376)
318 TIGR02053 MerA mercuric reduct 92.8 0.12 2.7E-06 55.9 4.7 38 23-60 167-204 (463)
319 PRK14989 nitrite reductase sub 92.8 0.13 2.9E-06 59.7 5.2 55 280-335 188-242 (847)
320 PRK11064 wecC UDP-N-acetyl-D-m 92.8 0.12 2.6E-06 55.2 4.4 34 23-56 4-37 (415)
321 PRK06370 mercuric reductase; V 92.8 0.14 3E-06 55.5 5.0 38 23-60 172-209 (463)
322 PRK09260 3-hydroxybutyryl-CoA 92.7 0.11 2.4E-06 52.5 4.0 33 24-56 3-35 (288)
323 TIGR03377 glycerol3P_GlpA glyc 92.6 0.34 7.3E-06 53.3 7.9 60 270-332 117-184 (516)
324 PRK07530 3-hydroxybutyryl-CoA 92.6 0.14 3.1E-06 51.7 4.6 33 23-55 5-37 (292)
325 TIGR01421 gluta_reduc_1 glutat 92.5 0.14 3.1E-06 55.2 4.7 37 23-59 167-203 (450)
326 PRK14106 murD UDP-N-acetylmura 92.5 0.17 3.7E-06 54.5 5.2 35 21-55 4-38 (450)
327 PRK06416 dihydrolipoamide dehy 92.4 0.15 3.3E-06 55.1 4.8 38 23-60 173-210 (462)
328 PRK13512 coenzyme A disulfide 92.4 0.14 3.1E-06 55.0 4.5 37 23-59 149-185 (438)
329 PRK06912 acoL dihydrolipoamide 92.4 0.16 3.5E-06 54.9 4.8 37 23-59 171-207 (458)
330 PRK06467 dihydrolipoamide dehy 92.3 0.16 3.4E-06 55.2 4.7 38 23-60 175-212 (471)
331 PRK07846 mycothione reductase; 92.2 0.17 3.6E-06 54.7 4.8 36 23-58 167-202 (451)
332 PRK07818 dihydrolipoamide dehy 92.2 0.17 3.6E-06 54.9 4.7 37 23-59 173-209 (466)
333 PRK06115 dihydrolipoamide dehy 92.2 0.17 3.8E-06 54.8 4.8 37 23-59 175-211 (466)
334 PRK06292 dihydrolipoamide dehy 92.1 0.21 4.5E-06 54.0 5.3 37 23-59 170-206 (460)
335 PRK04148 hypothetical protein; 92.1 0.14 3E-06 45.5 3.2 33 23-56 18-50 (134)
336 COG0569 TrkA K+ transport syst 92.1 0.17 3.6E-06 49.3 4.1 32 24-55 2-33 (225)
337 TIGR03385 CoA_CoA_reduc CoA-di 92.1 0.17 3.8E-06 54.0 4.6 36 23-58 138-173 (427)
338 PRK07066 3-hydroxybutyryl-CoA 92.1 0.17 3.6E-06 52.0 4.2 33 24-56 9-41 (321)
339 TIGR02374 nitri_red_nirB nitri 92.0 0.15 3.2E-06 59.0 4.3 53 280-335 183-235 (785)
340 PRK07819 3-hydroxybutyryl-CoA 92.0 0.2 4.2E-06 50.7 4.6 34 24-57 7-40 (286)
341 PRK05249 soluble pyridine nucl 92.0 0.2 4.4E-06 54.1 5.0 38 23-60 176-213 (461)
342 TIGR02374 nitri_red_nirB nitri 91.5 0.21 4.5E-06 57.9 4.6 37 23-59 141-177 (785)
343 PRK05808 3-hydroxybutyryl-CoA 91.4 0.22 4.7E-06 50.2 4.3 33 24-56 5-37 (282)
344 PRK06327 dihydrolipoamide dehy 91.4 0.25 5.4E-06 53.7 5.1 38 23-60 184-221 (475)
345 COG0686 Ald Alanine dehydrogen 91.4 0.16 3.4E-06 51.0 3.0 43 23-65 169-219 (371)
346 PRK06522 2-dehydropantoate 2-r 91.4 0.23 4.9E-06 50.4 4.4 32 24-55 2-33 (304)
347 PF13738 Pyr_redox_3: Pyridine 91.3 0.5 1.1E-05 44.5 6.4 52 279-333 82-133 (203)
348 TIGR03452 mycothione_red mycot 91.3 0.25 5.4E-06 53.4 4.8 37 23-59 170-206 (452)
349 COG1004 Ugd Predicted UDP-gluc 91.2 0.23 4.9E-06 51.7 4.0 32 24-55 2-33 (414)
350 cd05292 LDH_2 A subgroup of L- 91.2 0.26 5.7E-06 50.4 4.6 32 24-55 2-35 (308)
351 TIGR03140 AhpF alkyl hydropero 91.1 0.24 5.1E-06 54.5 4.5 36 23-58 353-388 (515)
352 PRK06035 3-hydroxyacyl-CoA deh 91.1 0.26 5.6E-06 49.9 4.4 34 23-56 4-37 (291)
353 PRK09564 coenzyme A disulfide 90.9 0.29 6.2E-06 52.6 4.8 37 23-59 150-186 (444)
354 PRK07845 flavoprotein disulfid 90.7 0.34 7.4E-06 52.5 5.1 39 23-61 178-216 (466)
355 TIGR01316 gltA glutamate synth 90.6 0.29 6.2E-06 52.9 4.5 34 23-56 273-306 (449)
356 TIGR03026 NDP-sugDHase nucleot 90.6 0.26 5.6E-06 52.6 4.1 33 24-56 2-34 (411)
357 PRK05708 2-dehydropantoate 2-r 90.6 0.31 6.7E-06 49.8 4.4 33 23-55 3-35 (305)
358 PRK05257 malate:quinone oxidor 90.5 0.68 1.5E-05 50.6 7.3 63 269-333 170-241 (494)
359 TIGR01320 mal_quin_oxido malat 90.5 0.75 1.6E-05 50.1 7.6 41 23-63 1-43 (483)
360 PF05834 Lycopene_cycl: Lycope 90.5 14 0.00029 38.8 16.9 50 279-332 87-136 (374)
361 PRK10262 thioredoxin reductase 90.5 0.33 7.2E-06 49.7 4.6 35 23-57 147-181 (321)
362 PRK12921 2-dehydropantoate 2-r 90.4 0.31 6.6E-06 49.5 4.3 30 24-53 2-31 (305)
363 TIGR01424 gluta_reduc_2 glutat 90.4 0.32 7E-06 52.4 4.7 36 23-58 167-202 (446)
364 PRK14989 nitrite reductase sub 90.2 0.31 6.7E-06 56.7 4.6 36 24-59 147-182 (847)
365 PLN02545 3-hydroxybutyryl-CoA 90.2 0.36 7.8E-06 48.9 4.6 32 24-55 6-37 (295)
366 PF01262 AlaDh_PNT_C: Alanine 90.2 0.39 8.5E-06 44.4 4.5 33 23-55 21-53 (168)
367 PRK06130 3-hydroxybutyryl-CoA 90.2 0.32 6.9E-06 49.7 4.2 32 24-55 6-37 (311)
368 PTZ00153 lipoamide dehydrogena 90.2 0.35 7.6E-06 54.6 4.9 37 23-59 313-349 (659)
369 PRK15317 alkyl hydroperoxide r 90.1 0.33 7.1E-06 53.4 4.5 35 23-57 352-386 (517)
370 PTZ00058 glutathione reductase 90.1 0.33 7.2E-06 53.8 4.6 37 23-59 238-274 (561)
371 PRK08229 2-dehydropantoate 2-r 90.1 0.3 6.5E-06 50.5 4.0 32 24-55 4-35 (341)
372 PRK11199 tyrA bifunctional cho 90.0 0.42 9.2E-06 50.3 5.0 41 15-55 91-132 (374)
373 cd01080 NAD_bind_m-THF_DH_Cycl 89.9 0.51 1.1E-05 43.7 4.9 34 21-54 43-77 (168)
374 COG1249 Lpd Pyruvate/2-oxoglut 89.9 0.4 8.6E-06 51.7 4.7 38 23-60 174-211 (454)
375 TIGR01763 MalateDH_bact malate 89.9 0.42 9.2E-06 48.8 4.7 33 23-55 2-35 (305)
376 TIGR03143 AhpF_homolog putativ 89.8 0.35 7.7E-06 53.7 4.5 35 23-57 144-178 (555)
377 PLN02507 glutathione reductase 89.7 0.4 8.6E-06 52.5 4.7 36 23-58 204-239 (499)
378 PRK12770 putative glutamate sy 89.6 0.37 8.1E-06 50.1 4.2 34 23-56 173-207 (352)
379 PRK08010 pyridine nucleotide-d 89.5 0.5 1.1E-05 50.8 5.2 38 23-60 159-196 (441)
380 PRK06116 glutathione reductase 89.5 0.43 9.4E-06 51.4 4.8 36 23-58 168-203 (450)
381 TIGR01292 TRX_reduct thioredox 89.5 0.43 9.2E-06 47.8 4.4 35 23-57 142-176 (300)
382 PRK07417 arogenate dehydrogena 89.4 0.4 8.8E-06 48.2 4.2 32 24-55 2-33 (279)
383 PRK12831 putative oxidoreducta 89.3 0.42 9.2E-06 51.8 4.5 34 23-56 282-315 (464)
384 PRK00094 gpsA NAD(P)H-dependen 89.2 0.47 1E-05 48.6 4.6 32 24-55 3-34 (325)
385 PRK14619 NAD(P)H-dependent gly 89.0 0.53 1.2E-05 48.1 4.8 33 23-55 5-37 (308)
386 PRK13748 putative mercuric red 89.0 0.49 1.1E-05 52.5 4.9 34 23-56 271-304 (561)
387 PRK12409 D-amino acid dehydrog 88.9 1.7 3.8E-05 45.9 8.8 61 270-333 185-253 (410)
388 PLN02546 glutathione reductase 88.7 0.52 1.1E-05 52.3 4.7 37 23-59 253-289 (558)
389 PRK06719 precorrin-2 dehydroge 88.7 0.6 1.3E-05 42.7 4.4 36 18-53 9-44 (157)
390 TIGR00518 alaDH alanine dehydr 88.6 0.53 1.1E-05 49.5 4.5 33 23-55 168-200 (370)
391 PF03446 NAD_binding_2: NAD bi 88.6 0.6 1.3E-05 42.9 4.4 32 24-55 3-34 (163)
392 PLN02353 probable UDP-glucose 88.6 0.49 1.1E-05 51.3 4.3 34 23-56 2-37 (473)
393 PRK14694 putative mercuric red 88.5 0.61 1.3E-05 50.6 5.1 33 23-55 179-211 (468)
394 TIGR01470 cysG_Nterm siroheme 88.5 0.6 1.3E-05 44.8 4.4 36 20-55 7-42 (205)
395 PF02254 TrkA_N: TrkA-N domain 88.4 0.7 1.5E-05 39.5 4.5 32 25-56 1-32 (116)
396 KOG0404 Thioredoxin reductase 88.4 0.47 1E-05 45.5 3.5 41 23-63 9-53 (322)
397 PF13241 NAD_binding_7: Putati 88.4 0.37 8E-06 40.7 2.6 37 19-55 4-40 (103)
398 PRK06718 precorrin-2 dehydroge 88.2 0.65 1.4E-05 44.4 4.5 36 19-54 7-42 (202)
399 PF13478 XdhC_C: XdhC Rossmann 87.9 0.58 1.3E-05 41.8 3.7 32 25-56 1-32 (136)
400 COG1748 LYS9 Saccharopine dehy 87.9 0.64 1.4E-05 48.8 4.5 32 23-54 2-34 (389)
401 PRK14620 NAD(P)H-dependent gly 87.9 0.64 1.4E-05 47.8 4.5 32 24-55 2-33 (326)
402 PRK14618 NAD(P)H-dependent gly 87.9 0.75 1.6E-05 47.4 5.0 33 23-55 5-37 (328)
403 KOG3851 Sulfide:quinone oxidor 87.8 0.5 1.1E-05 47.7 3.5 37 20-56 37-75 (446)
404 PRK14727 putative mercuric red 87.7 0.72 1.6E-05 50.2 5.0 33 23-55 189-221 (479)
405 TIGR01915 npdG NADPH-dependent 87.6 0.7 1.5E-05 44.7 4.4 32 24-55 2-34 (219)
406 PRK06134 putative FAD-binding 87.6 1.5 3.3E-05 48.9 7.7 52 279-332 217-272 (581)
407 PRK15057 UDP-glucose 6-dehydro 87.5 0.63 1.4E-05 49.2 4.3 32 24-56 2-33 (388)
408 TIGR02354 thiF_fam2 thiamine b 87.5 0.84 1.8E-05 43.6 4.7 33 22-54 21-54 (200)
409 PF10727 Rossmann-like: Rossma 87.3 0.46 1E-05 41.9 2.6 39 17-55 5-43 (127)
410 PRK07531 bifunctional 3-hydrox 87.2 0.62 1.3E-05 50.9 4.2 32 24-55 6-37 (495)
411 cd05291 HicDH_like L-2-hydroxy 87.1 0.78 1.7E-05 46.8 4.6 33 24-56 2-36 (306)
412 TIGR02279 PaaC-3OHAcCoADH 3-hy 87.1 0.63 1.4E-05 50.9 4.1 33 24-56 7-39 (503)
413 cd01075 NAD_bind_Leu_Phe_Val_D 87.0 1.2 2.6E-05 42.5 5.5 37 19-55 25-61 (200)
414 PF01134 GIDA: Glucose inhibit 87.0 2.1 4.5E-05 45.1 7.7 28 24-51 1-28 (392)
415 PRK15116 sulfur acceptor prote 86.9 0.84 1.8E-05 45.6 4.5 34 22-55 30-64 (268)
416 PRK11749 dihydropyrimidine deh 86.8 0.76 1.6E-05 49.7 4.5 34 23-56 274-308 (457)
417 COG3486 IucD Lysine/ornithine 86.8 0.77 1.7E-05 48.0 4.2 39 19-57 2-41 (436)
418 PTZ00052 thioredoxin reductase 86.8 0.82 1.8E-05 50.1 4.8 32 23-54 183-214 (499)
419 KOG2304 3-hydroxyacyl-CoA dehy 86.7 0.65 1.4E-05 44.6 3.4 35 22-56 11-45 (298)
420 PRK07121 hypothetical protein; 86.7 1.8 3.8E-05 47.3 7.4 54 278-332 176-233 (492)
421 TIGR01438 TGR thioredoxin and 86.6 0.73 1.6E-05 50.3 4.3 32 23-54 181-212 (484)
422 PRK13339 malate:quinone oxidor 86.5 2 4.3E-05 46.9 7.6 63 269-333 171-242 (497)
423 PRK01710 murD UDP-N-acetylmura 86.5 0.8 1.7E-05 49.5 4.5 32 24-55 16-47 (458)
424 PF01488 Shikimate_DH: Shikima 86.4 1.1 2.4E-05 39.7 4.7 33 22-54 12-45 (135)
425 TIGR01505 tartro_sem_red 2-hyd 86.3 0.74 1.6E-05 46.5 3.9 31 25-55 2-32 (291)
426 PRK08268 3-hydroxy-acyl-CoA de 86.1 0.76 1.6E-05 50.4 4.1 34 23-56 8-41 (507)
427 TIGR01816 sdhA_forward succina 86.1 2.8 6.1E-05 46.7 8.6 58 273-332 112-175 (565)
428 cd01339 LDH-like_MDH L-lactate 85.7 0.87 1.9E-05 46.3 4.1 31 25-55 1-32 (300)
429 PRK11730 fadB multifunctional 85.6 0.77 1.7E-05 52.6 4.0 34 23-56 314-347 (715)
430 PTZ00318 NADH dehydrogenase-li 85.5 1 2.2E-05 48.1 4.7 36 24-59 175-224 (424)
431 PRK04308 murD UDP-N-acetylmura 85.5 1.2 2.7E-05 47.8 5.4 35 23-57 6-40 (445)
432 TIGR01423 trypano_reduc trypan 85.4 1 2.2E-05 49.2 4.6 37 23-59 188-227 (486)
433 COG2509 Uncharacterized FAD-de 85.4 0.8 1.7E-05 48.5 3.6 40 17-56 13-57 (486)
434 PRK03803 murD UDP-N-acetylmura 85.4 1.1 2.5E-05 48.2 5.0 39 17-55 1-39 (448)
435 KOG3923 D-aspartate oxidase [A 85.4 0.5 1.1E-05 47.2 2.0 26 21-46 2-27 (342)
436 PRK06223 malate dehydrogenase; 85.1 1.2 2.5E-05 45.5 4.7 34 23-56 3-37 (307)
437 TIGR02437 FadB fatty oxidation 85.1 0.85 1.8E-05 52.2 4.0 34 23-56 314-347 (714)
438 PRK15461 NADH-dependent gamma- 85.0 1 2.2E-05 45.8 4.1 32 24-55 3-34 (296)
439 PRK03369 murD UDP-N-acetylmura 85.0 1 2.2E-05 49.3 4.3 32 24-55 14-45 (488)
440 PRK09424 pntA NAD(P) transhydr 84.9 0.95 2.1E-05 49.4 4.1 34 22-55 165-198 (509)
441 PRK04690 murD UDP-N-acetylmura 84.9 1 2.2E-05 48.9 4.4 34 23-56 9-42 (468)
442 PRK02472 murD UDP-N-acetylmura 84.8 1.3 2.7E-05 47.7 5.0 33 23-55 6-38 (447)
443 PRK05329 anaerobic glycerol-3- 84.7 3.1 6.8E-05 44.5 7.9 34 22-55 2-35 (422)
444 PLN02657 3,8-divinyl protochlo 84.6 2 4.4E-05 45.4 6.4 42 14-55 52-94 (390)
445 PRK00141 murD UDP-N-acetylmura 84.5 1.3 2.8E-05 48.2 4.9 40 14-55 9-48 (473)
446 cd05191 NAD_bind_amino_acid_DH 84.4 2.1 4.6E-05 34.7 5.0 32 22-53 23-55 (86)
447 PRK10157 putative oxidoreducta 84.4 3.1 6.7E-05 44.6 7.7 50 280-332 109-158 (428)
448 PRK11559 garR tartronate semia 84.3 1.1 2.4E-05 45.3 4.1 32 24-55 4-35 (296)
449 PRK12778 putative bifunctional 84.2 1.1 2.3E-05 51.8 4.4 34 23-56 571-605 (752)
450 cd00401 AdoHcyase S-adenosyl-L 84.1 1.3 2.7E-05 47.2 4.4 35 22-56 202-236 (413)
451 COG2072 TrkA Predicted flavopr 84.0 1.5 3.3E-05 47.2 5.2 36 22-57 175-210 (443)
452 PRK06175 L-aspartate oxidase; 83.9 3.8 8.3E-05 44.0 8.2 39 21-60 3-41 (433)
453 cd01065 NAD_bind_Shikimate_DH 83.7 1.9 4.2E-05 38.7 5.0 34 22-55 19-53 (155)
454 COG0771 MurD UDP-N-acetylmuram 83.7 1.2 2.5E-05 47.8 4.0 36 22-57 7-42 (448)
455 PLN02256 arogenate dehydrogena 83.6 1.6 3.4E-05 44.6 4.8 35 21-55 35-69 (304)
456 COG1250 FadB 3-hydroxyacyl-CoA 83.5 1.2 2.7E-05 45.2 3.9 32 23-54 4-35 (307)
457 PRK00683 murD UDP-N-acetylmura 83.4 1.3 2.8E-05 47.3 4.3 34 23-56 4-37 (418)
458 PLN02695 GDP-D-mannose-3',5'-e 83.3 2 4.4E-05 45.0 5.7 38 18-55 17-55 (370)
459 PRK12835 3-ketosteroid-delta-1 83.2 3 6.5E-05 46.6 7.3 54 278-332 212-269 (584)
460 PRK06847 hypothetical protein; 83.1 3.7 8.1E-05 42.7 7.6 37 21-57 3-39 (375)
461 TIGR02964 xanthine_xdhC xanthi 83.0 1.7 3.6E-05 43.0 4.6 35 22-56 100-134 (246)
462 PRK12549 shikimate 5-dehydroge 83.0 1.6 3.5E-05 44.1 4.5 33 23-55 128-161 (284)
463 TIGR02441 fa_ox_alpha_mit fatt 83.0 1.2 2.5E-05 51.2 3.9 34 23-56 336-369 (737)
464 PRK04176 ribulose-1,5-biphosph 82.8 3.8 8.2E-05 40.7 7.1 53 279-332 104-167 (257)
465 COG1893 ApbA Ketopantoate redu 82.8 1.2 2.7E-05 45.4 3.7 33 24-56 2-34 (307)
466 TIGR01813 flavo_cyto_c flavocy 82.8 3.7 7.9E-05 44.0 7.5 38 24-61 1-39 (439)
467 PRK08773 2-octaprenyl-3-methyl 82.7 3.5 7.6E-05 43.3 7.3 38 20-57 4-41 (392)
468 PRK08306 dipicolinate synthase 82.7 1.6 3.5E-05 44.3 4.5 34 22-55 152-185 (296)
469 TIGR02440 FadJ fatty oxidation 82.4 1.3 2.8E-05 50.6 4.0 34 23-56 305-339 (699)
470 COG0287 TyrA Prephenate dehydr 82.4 1.3 2.8E-05 44.6 3.6 42 23-64 4-45 (279)
471 PRK07831 short chain dehydroge 82.4 2.4 5.3E-05 41.6 5.6 34 22-55 17-52 (262)
472 PRK07688 thiamine/molybdopteri 82.3 1.8 4E-05 44.8 4.8 33 22-54 24-57 (339)
473 cd01078 NAD_bind_H4MPT_DH NADP 82.3 2.3 5E-05 40.1 5.1 34 21-54 27-61 (194)
474 PTZ00082 L-lactate dehydrogena 82.2 2.1 4.5E-05 44.1 5.1 35 23-57 7-42 (321)
475 PLN02712 arogenate dehydrogena 81.9 2.3 5E-05 48.3 5.7 34 22-55 52-85 (667)
476 PF00070 Pyr_redox: Pyridine n 81.9 3.7 8E-05 32.5 5.5 41 279-322 40-80 (80)
477 PRK07502 cyclohexadienyl dehyd 81.7 1.8 4E-05 44.0 4.5 33 23-55 7-41 (307)
478 TIGR00872 gnd_rel 6-phosphoglu 81.7 1.8 3.9E-05 44.0 4.4 32 24-55 2-33 (298)
479 PLN02464 glycerol-3-phosphate 81.6 5.1 0.00011 45.2 8.4 60 273-332 223-290 (627)
480 PRK09496 trkA potassium transp 81.5 1.5 3.4E-05 47.0 4.1 33 24-56 2-34 (453)
481 PRK11154 fadJ multifunctional 81.5 1.4 3.1E-05 50.4 3.9 33 23-55 310-343 (708)
482 TIGR01812 sdhA_frdA_Gneg succi 81.4 5.7 0.00012 44.2 8.6 38 24-61 1-38 (566)
483 PTZ00142 6-phosphogluconate de 81.3 1.6 3.4E-05 47.4 4.0 34 23-56 2-35 (470)
484 PRK05945 sdhA succinate dehydr 81.3 5.7 0.00012 44.3 8.6 41 20-60 1-43 (575)
485 cd01487 E1_ThiF_like E1_ThiF_l 81.2 2.1 4.7E-05 39.8 4.4 30 25-54 2-32 (174)
486 PRK02006 murD UDP-N-acetylmura 81.2 1.7 3.7E-05 47.5 4.3 32 24-55 9-40 (498)
487 PRK05675 sdhA succinate dehydr 81.2 5.4 0.00012 44.5 8.3 60 272-332 118-183 (570)
488 PLN02172 flavin-containing mon 81.2 1.5 3.3E-05 47.5 3.8 33 23-55 205-237 (461)
489 PRK12844 3-ketosteroid-delta-1 81.0 4.2 9.2E-05 45.2 7.4 53 278-332 207-263 (557)
490 COG0665 DadA Glycine/D-amino a 80.9 5.3 0.00011 41.6 7.8 40 20-59 2-41 (387)
491 PRK12475 thiamine/molybdopteri 80.9 2.1 4.5E-05 44.4 4.5 33 22-54 24-57 (338)
492 PF00899 ThiF: ThiF family; I 80.9 2.1 4.6E-05 37.8 4.1 32 23-54 3-35 (135)
493 PRK07333 2-octaprenyl-6-methox 80.7 4.6 0.0001 42.5 7.3 35 22-56 1-37 (403)
494 TIGR02853 spore_dpaA dipicolin 80.5 1.9 4.2E-05 43.6 4.1 34 22-55 151-184 (287)
495 TIGR00507 aroE shikimate 5-deh 80.5 2.1 4.6E-05 42.7 4.4 32 23-54 118-149 (270)
496 PRK07045 putative monooxygenas 80.5 5 0.00011 42.1 7.5 38 20-57 3-40 (388)
497 PF03807 F420_oxidored: NADP o 80.4 2.7 5.8E-05 34.5 4.3 31 25-55 2-36 (96)
498 TIGR02032 GG-red-SF geranylger 80.4 6 0.00013 39.2 7.7 51 279-332 91-142 (295)
499 PRK12779 putative bifunctional 80.3 1.9 4.1E-05 50.9 4.5 34 23-56 448-481 (944)
500 TIGR00292 thiazole biosynthesi 80.2 5.9 0.00013 39.3 7.4 52 279-332 100-164 (254)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=2.7e-68 Score=556.04 Aligned_cols=373 Identities=35% Similarity=0.647 Sum_probs=289.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
++++|||||+|||+.++++|++||++|++|||+|+|++|||.++|++++++.+|+...... ..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~ 63 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP 63 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence 4688999999999999999999999999999999999999999999999998888544210 00
Q ss_pred ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l 178 (539)
+.+ ...|+|+|||. |++++++|+++++|+++++.+|+||+.+++.|++. +|++++||++++|+|+++.+++.+||+|
T Consensus 64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l 140 (438)
T PF00996_consen 64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL 140 (438)
T ss_dssp HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence 122 36799999998 99999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHH
Q 009226 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l 258 (539)
|||++++.++.+..+... + ..+....||.+++++|++++.+++++.|+++|...+.. -..++.+++.++++|+
T Consensus 141 mkFl~~v~~~~~~~~~~~---~-~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 141 MKFLKFVANYEEDDPSTH---K-GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHGCTTBGGGS---T-TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcchh---h-ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence 999999988754322110 0 11344689999999999999999999999998643221 1135789999999999
Q ss_pred HhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009226 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (539)
Q Consensus 259 ~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~ 338 (539)
.|+|+||++ ||+||+||.|||+|+|||++|+.||+|+||++|++|..++ +|++.+|. ++|++++|++||++|+|.
T Consensus 214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~- 288 (438)
T PF00996_consen 214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL- 288 (438)
T ss_dssp HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence 999999986 5999999999999999999999999999999999999874 68888997 599999999999998876
Q ss_pred CCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC--CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCc
Q 009226 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (539)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~--~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~ 416 (539)
|+-. ...++++|+|+|+++|+.+.. ....+++|+.+.+ ..++||++++|+++++||+|+
T Consensus 289 p~~v-----------------~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~--~~~dIyv~~~ss~~~~CP~G~ 349 (438)
T PF00996_consen 289 PEKV-----------------KKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVG--RKSDIYVLQLSSSTGVCPKGQ 349 (438)
T ss_dssp GCGE-----------------EEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCT--SSS-EEEEEEEGGGTSS-TT-
T ss_pred cccc-----------------cccceEEEEEEEEcCCCCCCCCCceEEEecCCcccC--CCCCeEEEEECCCccccCCCc
Confidence 2210 124689999999999998643 3456779987654 356799999999999999999
Q ss_pred EEEEEEEeeccccchHHHHHHHHHHHH
Q 009226 417 FVLYFSALCDEVNQGKKLLHAALSALQ 443 (539)
Q Consensus 417 ~vi~~st~~~~~~~~~~~l~~~~~~l~ 443 (539)
||+|+||...+ ++++++|+++++.|-
T Consensus 350 yi~~~St~~~t-~~p~~eL~~~l~lL~ 375 (438)
T PF00996_consen 350 YIAYVSTTVET-SNPEEELEPALELLG 375 (438)
T ss_dssp EEEEEEEEE-S-S-HHHHTHHHHHTT-
T ss_pred EEEEEEeccCC-CCcHHHHHHHHHhhc
Confidence 99999998754 589999999998543
No 2
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-68 Score=525.65 Aligned_cols=418 Identities=34% Similarity=0.586 Sum_probs=330.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchh--------hhhhhhc---cCCCCC-------
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPS------- 80 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~--------~~~~~~~---~~~~~~------- 80 (539)
.|++|||||||||+.+++.|++.+|+|.+|||||+|+||||.|+||++. .+.+..+ +..++.
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~ 84 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA 84 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence 5688999999999999999999999999999999999999999999987 3333321 111110
Q ss_pred ---CCCCCCccccccccc---------------cccccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccc
Q 009226 81 ---SVCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142 (539)
Q Consensus 81 ---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v 142 (539)
..+....+.+++... .+...+.+.+|+|++||. |+++|++|.++++|+++++.+|.||+.+
T Consensus 85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V 163 (547)
T KOG4405|consen 85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV 163 (547)
T ss_pred CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence 001122333333221 111223357899999998 9999999999999999999999999999
Q ss_pred cceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChh
Q 009226 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK 222 (539)
Q Consensus 143 ~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~ 222 (539)
++.+... +|++..|||||+|+|+++.+++.|||+||||++++.+|..+. ..+...++.+.||.|||++++++|+
T Consensus 164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~ 237 (547)
T KOG4405|consen 164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK 237 (547)
T ss_pred chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence 9998775 789999999999999999999999999999999999985211 1122345677899999999999999
Q ss_pred HHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcc
Q 009226 223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (539)
Q Consensus 223 l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V 302 (539)
++.+++++|+|..+++ .++.+|+.+.+.|+.|+||||+++ |+||.||.|||+|+|||+||++||.|+|+++|
T Consensus 238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V 309 (547)
T KOG4405|consen 238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV 309 (547)
T ss_pred hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence 9999999999976543 468999999999999999999976 99999999999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCC-
Q 009226 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS- 381 (539)
Q Consensus 303 ~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~- 381 (539)
+.|..+++.+++..+..+.|+++.|+.+|+.|.+. |... ... ....+++|+++|++.++.....
T Consensus 310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~~~-------------~~~K~Israv~itd~sil~~e~~ 374 (547)
T KOG4405|consen 310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-CSR-------------VQLKQISRAVLITDPSILKTELD 374 (547)
T ss_pred hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-ccc-------------cchhhcceeEEecCccccchhHH
Confidence 99999864444333334789999999999999887 4321 111 1233799999999999764331
Q ss_pred c--eEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeeccccchHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009226 382 N--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS 459 (539)
Q Consensus 382 ~--~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 459 (539)
. .++..|+.. + ....+++++.+++++.||+|.|++|+| +.....++++++..+.+++.. +.
T Consensus 375 q~~~ll~~~~~e-p--g~~avr~iel~~~t~tc~kg~yLvhlT--~~~s~~~~ed~~S~~~kif~t------------~~ 437 (547)
T KOG4405|consen 375 QQLSLLSLLAVE-P--GAMAVRLIELCSSTMTCPKGTYLVHLT--CLSSKTAREDLESDVVKIFTT------------EI 437 (547)
T ss_pred hhhhhhhccccC-c--chhhHHHHHhhcccccCccceEEEEee--cccCcccccchhhhHHHHhhh------------hh
Confidence 1 234444332 1 245688999999999999999999998 444568899999999999962 11
Q ss_pred cccccCCcceEeEEeEEEEcCcceE
Q 009226 460 EDMEEAKPTLLWSALYIQDLSLGYC 484 (539)
Q Consensus 460 ~~~~~~~p~ilw~~~~~~~~~~~~~ 484 (539)
.+ +..||++||++||++++.+...
T Consensus 438 ~~-E~~kp~llw~~yf~~~~~s~~s 461 (547)
T KOG4405|consen 438 KN-ETSKPRLLWALYFTMRDSSVIS 461 (547)
T ss_pred cc-ccccceehHHHHhhHHhhcccc
Confidence 12 3369999999999999988543
No 3
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=4e-61 Score=508.61 Aligned_cols=373 Identities=29% Similarity=0.521 Sum_probs=314.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
|+++|||||||||++||++|++||++|++|+|+|+|++|||+++|++++++..|+... .++ .
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~-~~~-----------------~ 62 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPG-ETP-----------------P 62 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhccc-CCC-----------------c
Confidence 4678999999999999999999999999999999999999999999998865454221 110 0
Q ss_pred ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l 178 (539)
+.+ ...|.|++|+. |++++++|.++++|+++++.+|+||+.++..|++..+|+++++|+++.++|+++.+++.+||++
T Consensus 63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l 140 (443)
T PTZ00363 63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC 140 (443)
T ss_pred hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence 112 35789999996 9999999999999999999999999999999987448999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccc--cccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHH
Q 009226 179 MRFFKLVQGHLSLDESEENNVRISE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~ 256 (539)
|||++++.++....+. ... ++...|+.+||+++++++.+++++.+++++...+ +. ...++.+++.++++
T Consensus 141 ~kfl~~v~~~~~~~~~------~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~ 211 (443)
T PTZ00363 141 KNFLQYVSNYDENDPE------THKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKL 211 (443)
T ss_pred HHHHHHHHhhccCChh------hhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHH
Confidence 9999999877532211 111 1345899999999999999999998888775211 00 01357789999999
Q ss_pred HHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226 257 YNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (539)
Q Consensus 257 ~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~ 336 (539)
|+.|+++||.+ +++||+||+++|+|+|||+++++||+|+||++|++|..++ ++++++|++++|++++|+.||++|++
T Consensus 212 y~~S~~~~g~~--p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 212 YMDSLSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHhhccCC--cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECccc
Confidence 99999999964 4889999999999999999999999999999999998862 57788999999999999999999887
Q ss_pred CCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCC
Q 009226 337 TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414 (539)
Q Consensus 337 ~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~ 414 (539)
. |... ...++++|+|||+++|+... .+.++++||+.+++. .+.||++++|+++++||+
T Consensus 289 ~-p~~~-----------------~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~ 348 (443)
T PTZ00363 289 F-PDKV-----------------KKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPK 348 (443)
T ss_pred c-cccc-----------------ccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCC
Confidence 6 3210 13678999999999999653 245689999988753 567999999999999999
Q ss_pred CcEEEEEEEeeccccchHHHHHHHHHHHHh
Q 009226 415 GMFVLYFSALCDEVNQGKKLLHAALSALQK 444 (539)
Q Consensus 415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~~ 444 (539)
|+||+|+||.+++ .+++++|+++++.|+.
T Consensus 349 g~~i~~~st~~~t-~~~~~~l~~~~~~l~~ 377 (443)
T PTZ00363 349 GKYIAIISTTVET-NNPEKEIEPALKLLGP 377 (443)
T ss_pred CcEEEEEEEecCC-CCHHHHHHHHHHHhcc
Confidence 9999999998876 6999999999999995
No 4
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-54 Score=427.33 Aligned_cols=370 Identities=31% Similarity=0.543 Sum_probs=308.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
+.+|||||+|||+.+++.+++|+++|++|+|+|||++|||-.+|+++.++.+|+....... .+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~ 64 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE 64 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence 4569999999999999999999999999999999999999999999988888886442110 01
Q ss_pred cccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHH
Q 009226 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (539)
Q Consensus 100 ~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~ 179 (539)
.. ...|.|++||. |+++++.++++++|+..++.+|++|+.+...|++. +|++++||.++.++|+++.+++.+||.+|
T Consensus 65 ~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~ 141 (440)
T KOG1439|consen 65 KL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM 141 (440)
T ss_pred cc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence 11 36789999998 99999999999999999999999999999999987 77999999999999999999999999999
Q ss_pred HHHHHHHhhcccCcccccccccccc-ccC-CcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHH
Q 009226 180 RFFKLVQGHLSLDESEENNVRISEE-DLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (539)
Q Consensus 180 kfl~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~ 257 (539)
||+.++.++.+..+. .+.. +.. .++.+|+.++++....+++..+++++...+.- -..++.+++.+|++|
T Consensus 142 kFl~~V~n~~e~~~~------~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~---ld~p~~~~~~ri~~Y 212 (440)
T KOG1439|consen 142 KFLKFVLNYDEEDPK------TWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSY---LDQPAKETLERILLY 212 (440)
T ss_pred HHHHHHhhhhhhccc------cccccccccchHHHHHHHhcccccceeeeeeeeEEEecchh---ccCccHHHHHHHHHH
Confidence 999999987543322 1222 222 38999999999999999998887776532211 124688999999999
Q ss_pred HHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009226 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (539)
Q Consensus 258 l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~ 337 (539)
++|+++||+++ ++||+||.|||+|+|||.+++.||+|+||+++.+|...+ +|++++|+ +.++..+++++|++|+|.
T Consensus 213 ~~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~ 288 (440)
T KOG1439|consen 213 VRSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF 288 (440)
T ss_pred HHHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc
Confidence 99999999765 899999999999999999999999999999999998854 68888887 567778899999999886
Q ss_pred CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCC
Q 009226 338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415 (539)
Q Consensus 338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G 415 (539)
+.- ....+++.|++||++.|... +.+.++++||+.+.+ ..+.|||...|+....||+|
T Consensus 289 -~~~-----------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~--rksdi~v~~~ss~~~vcpeG 348 (440)
T KOG1439|consen 289 -PQK-----------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVG--RKSDIYVFGLSSAHNVCPEG 348 (440)
T ss_pred -hHH-----------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhC--CcccEEEEEeccCCCcCCCc
Confidence 221 11245799999999988653 445678899987665 36789999999999999999
Q ss_pred cEEEEEEEeeccccchHHHHHHHHHHHH
Q 009226 416 MFVLYFSALCDEVNQGKKLLHAALSALQ 443 (539)
Q Consensus 416 ~~vi~~st~~~~~~~~~~~l~~~~~~l~ 443 (539)
+||.|+||..++ ..++..+.++++.|-
T Consensus 349 ~yia~vsT~~Et-~~pE~ei~~~lellg 375 (440)
T KOG1439|consen 349 KYIAYVSTTVET-PNPEVEILPGLELLG 375 (440)
T ss_pred eEEEEEEeccCC-CChHHhhhhHHHhhC
Confidence 999999996654 467777777777664
No 5
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-51 Score=403.08 Aligned_cols=369 Identities=31% Similarity=0.538 Sum_probs=305.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
+.+.|||||+|||+.+++.+++|+.+|++|+|+|+|++||+-.+|++..++.+|..+....+.
T Consensus 3 ~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~----------------- 65 (434)
T COG5044 3 EETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPS----------------- 65 (434)
T ss_pred ccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhcccc-----------------
Confidence 345799999999999999999999999999999999999999999999998888876632110
Q ss_pred ccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 99 ~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l 178 (539)
.....+.|++||. |+++++.++++.+|++.++.+|++|+.+...|++. +|+++++|.++.++|.++.+++.+||.+
T Consensus 66 --k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~v 141 (434)
T COG5044 66 --KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRV 141 (434)
T ss_pred --ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHH
Confidence 1125688999998 99999999999999999999999999999999887 6799999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHH
Q 009226 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~-~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~ 257 (539)
|||++++..+.+.. ...-+.+.++++.+|+. +|+++.....++.+++++. ++.+ .++++++.+|.+|
T Consensus 142 mrFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~-ldl~-----~p~re~~erIl~Y 209 (434)
T COG5044 142 MRFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLD-----IPAREALERILRY 209 (434)
T ss_pred HHHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhh-cccc-----CCchHHHHHHHHH
Confidence 99999998885421 11112455688899987 6999999999999998875 2332 5789999999999
Q ss_pred HHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009226 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (539)
Q Consensus 258 l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~~ 337 (539)
++|++.||..| ++||+||.+||+|.|||.+++.||+|+||+++.+|.-. ..+.+|. .++.+..|.++|.+|++.
T Consensus 210 ~~Sf~~yg~~p--yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~ 283 (434)
T COG5044 210 MRSFGDYGKSP--YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF 283 (434)
T ss_pred HHhhcccCCCc--ceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc
Confidence 99999999754 99999999999999999999999999999999998643 2234665 577889999999988875
Q ss_pred CCCCCcccchhhhhhhhhcccCCCcceEEEEEEEec-CC--CCCCCCceEEEeCCCCCCCCCCceEEEEEeCCCCccCCC
Q 009226 338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414 (539)
Q Consensus 338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~-~~--l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~ 414 (539)
+. +.. ..+ ....+.|++||.. .| +....+.++++|||.++.. .+.|+|..+|+.+..||+
T Consensus 284 -~~---~~~-~~~----------q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPE 346 (434)
T COG5044 284 -RE---DSK-SVG----------QFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPE 346 (434)
T ss_pred -cc---ccc-ccc----------hhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCC
Confidence 21 100 000 1136899999977 54 3344467899999998764 456999999999999999
Q ss_pred CcEEEEEEEeeccccchHHHHHHHHHHHHh
Q 009226 415 GMFVLYFSALCDEVNQGKKLLHAALSALQK 444 (539)
Q Consensus 415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~~ 444 (539)
|++|.|++|..++ ..++..+.++++.|..
T Consensus 347 Gy~l~yisT~~et-~~~e~ei~~~lell~~ 375 (434)
T COG5044 347 GYYLAYISTIDET-PTPEDEILAALELLGP 375 (434)
T ss_pred ceEEEEEEeccCC-CChHHHHHHHHHhhcc
Confidence 9999999996543 5788888888886653
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.95 E-value=3.8e-26 Score=248.80 Aligned_cols=389 Identities=14% Similarity=0.105 Sum_probs=231.5
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH 104 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (539)
|||||||++||+||++|+++|++|+||||++++||+++|++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~------------------------------------- 43 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD------------------------------------- 43 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence 6999999999999999999999999999999999999998653
Q ss_pred CCCeEEecCCCEEEecChHHHHHHhcCCc--cccccccccccee-eEccCCceeecCCCHHHHHhc-cCCChhhHHHHHH
Q 009226 105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR 180 (539)
Q Consensus 105 ~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~--~~y~ef~~v~~~~-~~~~~g~l~~vP~s~~~vf~~-~~ls~~ek~~l~k 180 (539)
+|.+|. |++++..++.+.+++...|. .++++|...++.+ ++..+|+.+.++.+.+..... ..+++.+...+.+
T Consensus 44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 120 (502)
T TIGR02734 44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR 120 (502)
T ss_pred --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence 366788 58887766666677777663 5678888777655 334467778888776532221 2234556666777
Q ss_pred HHHHHHhhccc-------Ccccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhcc
Q 009226 181 FFKLVQGHLSL-------DESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK 246 (539)
Q Consensus 181 fl~~~~~~~~~-------~~~~~--~~-----~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s 246 (539)
|++.++..... .+... .. ......+...|+.+|++++..++.++.++.+...... .++ .+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g--~~p--~~~~ 196 (502)
T TIGR02734 121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLG--GNP--FRTP 196 (502)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeec--cCc--ccch
Confidence 66655432210 00000 00 0111233568999999998888899987753211111 111 1122
Q ss_pred chhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEE
Q 009226 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (539)
Q Consensus 247 ~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~ 326 (539)
+.. .+..+. .+. +.+.+|.+|++.++++|.+.++..|++|+++++|++|..+ ++++++|++++|+++.
T Consensus 197 ~~~---~l~~~~----~~~---~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 197 SIY---ALISAL----ERE---WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD 264 (502)
T ss_pred HHH---HHHHHH----Hhh---ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence 211 111111 111 1256999999999999999999999999999999999887 6778899999999999
Q ss_pred cCEEEECCC--CCCCCCCcccchhhhhhh-hhcccCCCcceEEEEEEEec---CCCCCCCCceEEEeCCCCC--------
Q 009226 327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL-------- 392 (539)
Q Consensus 327 Ad~VI~~p~--~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~vsr~i~I~~---~~l~~~~~~~~~~~p~~~~-------- 392 (539)
||+||++.+ .++..|+ +.+ ..+... +.+.............+.++ .++.....+.++..+....
T Consensus 265 ad~VI~a~~~~~~~~~l~-~~~-~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLL-PNH-PRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK 342 (502)
T ss_pred CCEEEECCcHHHHHHHhc-Ccc-ccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence 999997543 2322332 111 111111 11111111111222222244 3332222222333231100
Q ss_pred CC-CCCceEEEEEeCCC-CccCCCCcEEEEEEEeeccc----cchHHHHHHHHHHHHhhhhcCCCCCCCCccccccccCC
Q 009226 393 FP-EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEV----NQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAK 466 (539)
Q Consensus 393 ~~-~~~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~~~----~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 466 (539)
+. ...+.+|+...+.. ++.+|+|+.++++.+.++.. .+-++.-+.+.++++..... . ..-+.+
T Consensus 343 g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~il~~l~~---------~--~~p~l~ 411 (502)
T TIGR02734 343 GRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILAYLEE---------R--AIPGLR 411 (502)
T ss_pred CCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHHHHHHHHHHH---------h--cCCChh
Confidence 00 12567888887664 58899999999888866532 11123344555555543210 0 001345
Q ss_pred cceEeEEeEEEEcCcc
Q 009226 467 PTLLWSALYIQDLSLG 482 (539)
Q Consensus 467 p~ilw~~~~~~~~~~~ 482 (539)
.+|++.-..||.+...
T Consensus 412 ~~i~~~~~~TP~t~~~ 427 (502)
T TIGR02734 412 DRIVVERTFTPADFRD 427 (502)
T ss_pred HheEEEEEcCHHHHHH
Confidence 5677776666665443
No 7
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.9e-25 Score=241.49 Aligned_cols=260 Identities=20% Similarity=0.268 Sum_probs=169.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
|..+||||||||++||+||+.|||+|++|+|||||+++||+++|++++
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-------------------------------- 48 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-------------------------------- 48 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence 456999999999999999999999999999999999999999998764
Q ss_pred cccCCCCCeEEecCCCEEEecChHHHHHHhcCC-cccc-ccccccccee-eEccCCceeecCCCHHHHHh-ccCCChhhH
Q 009226 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK 175 (539)
Q Consensus 100 ~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~-~~~y-~ef~~v~~~~-~~~~~g~l~~vP~s~~~vf~-~~~ls~~ek 175 (539)
+|.+|. ||+++...... .++.+.+ ...+ +++...++.+ ++..+|+...+..+.+.... ....++.+.
T Consensus 49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~ 119 (487)
T COG1233 49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG 119 (487)
T ss_pred -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence 366677 47766555543 4444444 4444 6776666665 34445788888777654332 223445555
Q ss_pred HHHHHHHHHHHhhccc----Ccc-cccc----ccc------cccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcch
Q 009226 176 NQLMRFFKLVQGHLSL----DES-EENN----VRI------SEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (539)
Q Consensus 176 ~~l~kfl~~~~~~~~~----~~~-~~~~----~~~------~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~ 240 (539)
..+++++..+.+..+. ... .... ... .......+..+++..+..++.++..+.+...... ..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~--~~p 197 (487)
T COG1233 120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG--APP 197 (487)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC
Confidence 5666665543321110 000 0000 000 0112235666677655556777777666433221 121
Q ss_pred hhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC
Q 009226 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (539)
Q Consensus 241 ~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~ 320 (539)
. ... ++..+.. .++ +. .| +.||+||++.|+++|.+.++++||+|+++++|++|.++ +|+.++|++.
T Consensus 198 ~---~~~--a~~~~~~---~~~-~~--~G-~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~ 263 (487)
T COG1233 198 S---TPP--ALYLLLS---HLG-LS--GG-VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS 263 (487)
T ss_pred C---chh--HHHHHHH---Hhc-cc--CC-eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence 0 011 2222221 111 22 12 67999999999999999999999999999999999998 7777788877
Q ss_pred CCcEEEcCEEEECCCC
Q 009226 321 SGQDILSHKLVLDPSF 336 (539)
Q Consensus 321 ~G~~i~Ad~VI~~p~~ 336 (539)
+|+.+.+|.||++.+.
T Consensus 264 ~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 264 DGENIEADAVVSNADP 279 (487)
T ss_pred ccceeccceeEecCch
Confidence 8878999999986554
No 8
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.94 E-value=1e-24 Score=236.92 Aligned_cols=387 Identities=13% Similarity=0.127 Sum_probs=222.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (539)
|||||||+|++||++|+.|+++|++|+||||++.+||++++++.+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G---------------------------------- 46 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG---------------------------------- 46 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence 6999999999999999999999999999999999999999987654
Q ss_pred CCCCCeEEecCCCEEEe------cChHHHHHHhcCCccccccccccccee-eEccCCceeecCCCHHHHHhc-cCCChhh
Q 009226 103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME 174 (539)
Q Consensus 103 ~~~~~f~ldl~Gp~ll~------~~~~lv~~L~~s~~~~y~ef~~v~~~~-~~~~~g~l~~vP~s~~~vf~~-~~ls~~e 174 (539)
|.+|. |++.+. ....+.+.|...+. .+++......+ +...+|....++.+.+..... ....+.+
T Consensus 47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~ 118 (493)
T TIGR02730 47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE 118 (493)
T ss_pred -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence 33444 244432 11223334433332 23333322222 222356667777776543321 2234677
Q ss_pred HHHHHHHHHHHHhhccc---C---c--cccccc------c----ccccccCCcHHHHHHhcCCChhHHHHHHH-HHhccc
Q 009226 175 KNQLMRFFKLVQGHLSL---D---E--SEENNV------R----ISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMAD 235 (539)
Q Consensus 175 k~~l~kfl~~~~~~~~~---~---~--~~~~~~------~----~~~~~~~~~~~efL~~~~l~~~l~~~l~~-~i~l~~ 235 (539)
...+.+|++.+.+.... . . ...... . ....+...++.++++++..++.++.++.+ +.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~ 198 (493)
T TIGR02730 119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence 77788887765432110 0 0 000000 0 01123457889999998899999998763 222221
Q ss_pred CCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEE
Q 009226 236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (539)
Q Consensus 236 ~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~ 315 (539)
.+.+ +.+. +..+..+. ...++ .+.+|.||+++|+++|.+.++.+||+|+++++|++|.++ ++++.
T Consensus 199 ~p~~----~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~ 263 (493)
T TIGR02730 199 VPAD----QTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAV 263 (493)
T ss_pred CCcc----cchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEE
Confidence 1111 1112 11111111 11122 257999999999999999999999999999999999887 67888
Q ss_pred EEEeCCCcEEEcCEEEECCC--CCCCCCCcc--cchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCC
Q 009226 316 GVRLASGQDILSHKLVLDPS--FTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPR 390 (539)
Q Consensus 316 gV~l~~G~~i~Ad~VI~~p~--~~~~~l~~~--~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~-~~~~~~~p~~ 390 (539)
+|++.+|+++.||+||++.. .++..|+.. .++..+...+.+..+ . ......+.++.++.|.. ....+.++.-
T Consensus 264 gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s--~-s~~~~~l~l~~~~~p~~~~~~~~~~~~~ 340 (493)
T TIGR02730 264 GVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKS--P-SFLSLHLGVKADVLPPGTECHHILLEDW 340 (493)
T ss_pred EEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCC--C-ceEEEEEEecCccCCCCCCccEEecchh
Confidence 99999999999999997533 333333211 111111111222111 1 12233334566543322 1122333421
Q ss_pred CCCCCCCceEEEEEeCCC-CccCCCCcEEEEEEEeecccc-------chHHHHHHHHHHHHhhhhcCCCCCCCCcccccc
Q 009226 391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEVN-------QGKKLLHAALSALQKLLVTGTAGNSSTAQSEDM 462 (539)
Q Consensus 391 ~~~~~~~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~~~~-------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 462 (539)
.......+.+|+...+.. ++.+|+|+.++++.++..... +-++.-+.+.++++.... ..-
T Consensus 341 ~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~---------~~~--- 408 (493)
T TIGR02730 341 TNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLE---------KIF--- 408 (493)
T ss_pred hccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHH---------HHC---
Confidence 111123567888887654 578999999988776532211 112233445555554320 000
Q ss_pred ccCCcceEeEEeEEEEcCc
Q 009226 463 EEAKPTLLWSALYIQDLSL 481 (539)
Q Consensus 463 ~~~~p~ilw~~~~~~~~~~ 481 (539)
-+.+.+|+|.-..||.+..
T Consensus 409 p~l~~~I~~~~~~TP~t~~ 427 (493)
T TIGR02730 409 PGLDSAIDYKEVGTPRTHR 427 (493)
T ss_pred CChhhcEEEEEeeCchhHH
Confidence 1345678888888877754
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.94 E-value=1.7e-24 Score=235.35 Aligned_cols=383 Identities=12% Similarity=0.044 Sum_probs=210.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (539)
.||||||||++||+||+.|+++|++|+|||+++++||++++++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~----------------------------------- 46 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR----------------------------------- 46 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence 599999999999999999999999999999999999999998654
Q ss_pred CCCCCeEEecCCCEEEec---ChHHHHHHhcCCccccccccccccee-eEccCC-ceeecCCCHHHHHhc-cCCChhhHH
Q 009226 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN 176 (539)
Q Consensus 103 ~~~~~f~ldl~Gp~ll~~---~~~lv~~L~~s~~~~y~ef~~v~~~~-~~~~~g-~l~~vP~s~~~vf~~-~~ls~~ek~ 176 (539)
+|.+|. |++++.. .+.+-+++.+.|+... ++...++.+ ++..|| +.+.++.+.+..... ....+.+.+
T Consensus 47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~ 120 (492)
T TIGR02733 47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER 120 (492)
T ss_pred ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence 366677 4777643 3334455666665421 123333332 233455 345556665332210 011222321
Q ss_pred HHHHHHHHH----HhhcccCc----c-cc----------ccccccccccCCcHHHHHHhc--CCChhHHHHHHHHHhccc
Q 009226 177 QLMRFFKLV----QGHLSLDE----S-EE----------NNVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMAD 235 (539)
Q Consensus 177 ~l~kfl~~~----~~~~~~~~----~-~~----------~~~~~~~~~~~~~~~efL~~~--~l~~~l~~~l~~~i~l~~ 235 (539)
+++.+..+ .......+ . .. ........+...|+.+|++++ ..++.++.++.......
T Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~- 198 (492)
T TIGR02733 121 -FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLY- 198 (492)
T ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhh-
Confidence 11111100 00000000 0 00 000000123358899999986 45778888775422211
Q ss_pred CCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEE
Q 009226 236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (539)
Q Consensus 236 ~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~ 315 (539)
...+ +.+.++..++. +..+.... .| +.||+||+++|+++|.+.++..||+|+++++|++|.++ ++++.
T Consensus 199 -~~~~-~~~~~~~~~~~-----~~~~~~~~--~G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~ 266 (492)
T TIGR02733 199 -SQED-ADETAALYGAT-----VLQMAQAP--HG-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAG 266 (492)
T ss_pred -ccCC-hhhhhHHHHHH-----HhhccccC--CC-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEE
Confidence 1111 01122221111 11111111 12 46899999999999999999999999999999999987 66667
Q ss_pred EEEeCCC-----cEEEcCEEEECCC-CCCCCCCcccchhhhhhhh-hcccCCCcceEEEEEEEecCCCCC-C-CCceEEE
Q 009226 316 GVRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQ-AFSLSDNKGKVARGICITRSSLKP-D-LSNFLVI 386 (539)
Q Consensus 316 gV~l~~G-----~~i~Ad~VI~~p~-~~~~~l~~~~~~~l~~~~~-~l~~~~~~~~vsr~i~I~~~~l~~-~-~~~~~~~ 386 (539)
+|++.+| +++.||+||++.+ ..+..++ + ++.++..+. .+.+...........+.++....+ . ..+....
T Consensus 267 gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll-~-~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~ 344 (492)
T TIGR02733 267 WVVVVDSRKQEDLNVKADDVVANLPPQSLLELL-G-PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFL 344 (492)
T ss_pred EEEEecCCCCceEEEECCEEEECCCHHHHHHhc-C-cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeec
Confidence 7777665 6799999997633 2223332 1 122332222 221111111122233345553211 1 1122222
Q ss_pred eCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEEeecccc-------chHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009226 387 FPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVN-------QGKKLLHAALSALQKLLVTGTAGNSSTAQS 459 (539)
Q Consensus 387 ~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st~~~~~~-------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 459 (539)
+.+ ...+|+...+.+++.+|+|+.++++++.++... +-++.-+...++++..... .-
T Consensus 345 ~~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~---------~~ 408 (492)
T TIGR02733 345 SDH-------QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGH---------YF 408 (492)
T ss_pred cCC-------CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHH---------HC
Confidence 221 226888777777788999999998887664221 1134444466666654311 00
Q ss_pred cccccCCcceEeEEeEEEEcCc
Q 009226 460 EDMEEAKPTLLWSALYIQDLSL 481 (539)
Q Consensus 460 ~~~~~~~p~ilw~~~~~~~~~~ 481 (539)
-+.+.+|++.-..||.+..
T Consensus 409 ---p~l~~~i~~~~v~TP~t~~ 427 (492)
T TIGR02733 409 ---DLLEENWVHVELATPRTFE 427 (492)
T ss_pred ---CCccccEEEEEccCCchHH
Confidence 1345567777677766544
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.92 E-value=2e-22 Score=217.27 Aligned_cols=351 Identities=15% Similarity=0.153 Sum_probs=207.8
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 009226 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (539)
..||+|||||++||+||..|+++ |++|+|+|+++++||+++|++.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------ 51 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------ 51 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence 36999999999999999999999 99999999999999999996543
Q ss_pred cccccCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHH
Q 009226 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (539)
Q Consensus 98 ~~~~~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~ 176 (539)
+|.+|+ |++.++..+ .+.+++.+.|+..+..+..-...+++..+|+++++|.+..+.++...+++.+|.
T Consensus 52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 121 (462)
T TIGR00562 52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL 121 (462)
T ss_pred ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence 355677 588886665 488888888887765443333344444238888999877666666666655544
Q ss_pred HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHH
Q 009226 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (539)
Q Consensus 177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~ 256 (539)
.+. +..... . ....+.++.+|+++..-++....++. .+....+..++ +++++..++..+..
T Consensus 122 ~~~--~~~~~~------~--------~~~~d~s~~e~l~~~~g~~~~~~~~~-p~~~~~~~~~~--~~ls~~~~~~~~~~ 182 (462)
T TIGR00562 122 RAG--MDFIRP------A--------SPGKDESVEEFVRRRFGDEVVENLIE-PLLSGIYAGDP--SKLSLKSTFPKFYQ 182 (462)
T ss_pred Hhh--hhhccC------C--------CCCCCcCHHHHHHHhcCHHHHHHHHH-HHhcccccCCH--HHhhHHHHhHHHHH
Confidence 332 111100 0 01235899999986433333333332 22222233332 33566655544322
Q ss_pred HHH-------hh------------hhccCCCcc-EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEE
Q 009226 257 YNS-------SI------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (539)
Q Consensus 257 ~l~-------s~------------g~~g~~~ga-~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~g 316 (539)
... .+ ..+....+. +.++++|+++|++++++.+. .++|++|++|++|..+ +++ +.
T Consensus 183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~ 257 (462)
T TIGR00562 183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT 257 (462)
T ss_pred HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence 111 10 001111122 56789999999999887553 3789999999999875 333 46
Q ss_pred EEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC-CCCCCceEEEeCCCCCCC
Q 009226 317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KPDLSNFLVIFPPRSLFP 394 (539)
Q Consensus 317 V~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l-~~~~~~~~~~~p~~~~~~ 394 (539)
|++++|+++.||+||++ |...+..++ ++++...........+..+....+.++.+. ........+..|....
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~ll----~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~-- 331 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAGLL----SELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSK-- 331 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHHHh----cccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCC--
Confidence 77778889999999975 443333332 112222222223334566777777777763 3323344445553321
Q ss_pred CCCceEEEEEeCCC-CccCCCCcEEEEEEEeecc-----ccchHHHHHHHHHHHHh
Q 009226 395 EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQK 444 (539)
Q Consensus 395 ~~~~~v~v~~~ss~-~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~ 444 (539)
.....+...++. ...+|+|..++.+...... ..+.++.++.+++.|-+
T Consensus 332 --~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~ 385 (462)
T TIGR00562 332 --FAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKK 385 (462)
T ss_pred --CceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHH
Confidence 122223333222 4678989877755432221 11334555555555554
No 11
>PRK07233 hypothetical protein; Provisional
Probab=99.91 E-value=5.4e-22 Score=211.76 Aligned_cols=347 Identities=15% Similarity=0.144 Sum_probs=195.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
+|||||||++||+||..|+++|++|+|||+++++||+++++..+|
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g----------------------------------- 45 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG----------------------------------- 45 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence 599999999999999999999999999999999999999987643
Q ss_pred CCCCeEEecCCCEEEec-ChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHHHH
Q 009226 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF 182 (539)
Q Consensus 104 ~~~~f~ldl~Gp~ll~~-~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~kfl 182 (539)
|.+|. |.+.++. ...+.+++.+.|+.....+......+.+ +|+.++++ +..++++...+++.++..+...+
T Consensus 46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 117 (434)
T PRK07233 46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLG-TPLELLRFPHLSLIDKFRLGLLT 117 (434)
T ss_pred ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCC-CHHHHHcCCCCCHHHHHHhHHHH
Confidence 22233 2343332 2366777888887655555433322222 56655443 23344444556665555433322
Q ss_pred HHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhh
Q 009226 183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262 (539)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g 262 (539)
...... ....++...++.+||+++..++..+.++.. +....+..++ +++++..++..+..+...
T Consensus 118 ~~~~~~-----------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~s~~~~~~~~~~~~~~-- 181 (434)
T PRK07233 118 LLARRI-----------KDWRALDKVPAEEWLRRWSGEGVYEVFWEP-LLESKFGDYA--DDVSAAWLWSRIKRRGNR-- 181 (434)
T ss_pred Hhhhhc-----------ccccccccccHHHHHHHhcCHHHHHHHHHH-HHhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence 111110 001234568999999976544444554432 1111122222 335665554444322110
Q ss_pred hccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009226 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (539)
Q Consensus 263 ~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l 341 (539)
........+.+|++|++.|+++|.+.+...|++|++|++|++|..+ +++++++. .+|+++.||+||++ |...+..+
T Consensus 182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 0000011267999999999999999999999999999999999876 55655554 57889999999965 43333343
Q ss_pred CcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCceEEEEEeCCC-CccCCCCcEEEE
Q 009226 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN-LAVCPLGMFVLY 420 (539)
Q Consensus 342 ~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ss~-~~~cP~G~~vi~ 420 (539)
+ + +++...................+-+++++.+ ...+.++.... ....+...+.. ...+|+|..+++
T Consensus 259 l-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~g~~~~~ 326 (434)
T PRK07233 259 V-P---DLPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGA-----PFGGVIEHTNLVPPERYGGEHLVY 326 (434)
T ss_pred c-C---CCcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCC-----CcceEEEecccCCccccCCceEEE
Confidence 2 1 1221111111222233444445556777543 22222221111 11222333322 345667877766
Q ss_pred EEEeeccc-----cchHHHHHHHHHHHHh
Q 009226 421 FSALCDEV-----NQGKKLLHAALSALQK 444 (539)
Q Consensus 421 ~st~~~~~-----~~~~~~l~~~~~~l~~ 444 (539)
++..+... .+.++.++.+++.|-+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 355 (434)
T PRK07233 327 LPKYLPGDHPLWQMSDEELLDRFLSYLRK 355 (434)
T ss_pred EeeecCCCChhhcCCHHHHHHHHHHHHHH
Confidence 65544321 1224455555555544
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.91 E-value=8.8e-22 Score=214.23 Aligned_cols=292 Identities=17% Similarity=0.179 Sum_probs=181.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (539)
.+..+||||||||++||+||.+|+++ |++|+|||+++++||++.|++.+
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~------------------------------ 58 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED------------------------------ 58 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC------------------------------
Confidence 34567999999999999999999999 99999999999999999997543
Q ss_pred cccccCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccc-cceeeEccCCceeecCCCHHHHHhccCCChhhHH
Q 009226 98 SRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (539)
Q Consensus 98 ~~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v-~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~ 176 (539)
.|.+|. ||+.+...++.+..+.+.++.+++.|... ...|++. +|+++++|.+..+.+....+++.+|.
T Consensus 59 ---------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~ 127 (496)
T PLN02576 59 ---------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKI 127 (496)
T ss_pred ---------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHH
Confidence 255677 58888777776666766688777665432 2344554 88999999887776666667766655
Q ss_pred HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHH
Q 009226 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (539)
Q Consensus 177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~ 256 (539)
.+..-. . .... . .....+.++.+|+++. +.+.+.+.+...+....+..++ .++|+..++..+..
T Consensus 128 ~~~~~~--~-~~~~--~--------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~ 191 (496)
T PLN02576 128 RAGLGA--F-GWKR--P--------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWN 191 (496)
T ss_pred HHhHHH--h-hccC--C--------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHH
Confidence 433211 0 1100 0 0113468999999975 4555544443332222233333 44666665554333
Q ss_pred HHHhhh--------hc----------------c-CCCccEEeecCCcChHHHHHHHHHHHCC-cEEEeCCcceEEEEecC
Q 009226 257 YNSSIG--------RF----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQN 310 (539)
Q Consensus 257 ~l~s~g--------~~----------------g-~~~ga~lyp~gG~geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~ 310 (539)
.-.+.| +. . ...+.+.++++|+++|+++|++. +| +.|++|++|++|..+
T Consensus 192 ~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~-- 266 (496)
T PLN02576 192 LEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKN-- 266 (496)
T ss_pred HHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEEC--
Confidence 211100 00 0 01122567899999999988753 46 789999999999876
Q ss_pred CCcEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226 311 SGSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (539)
Q Consensus 311 ~g~~~gV~l--~~G~-~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l 376 (539)
++..+.|++ .+|+ ++.||+||+. |...+..++.+.. ++..+.+ ....+..+....+.+++++
T Consensus 267 ~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l-~~~~~~~~~~v~l~~~~~~ 332 (496)
T PLN02576 267 DDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADAL-PEFYYPPVAAVTTSYPKEA 332 (496)
T ss_pred CCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHh-ccCCCCceEEEEEEEchHH
Confidence 333133433 3453 6999999974 5444344321111 2222222 2233445666666677753
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.90 E-value=1.7e-21 Score=210.11 Aligned_cols=325 Identities=12% Similarity=0.150 Sum_probs=188.7
Q ss_pred ccEEEECCChhHHHHHHHHhhC------CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccc
Q 009226 23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY 96 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~------G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (539)
.+|||||||++||+||..|+++ |.+|+|||+++++||+++|.+.+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~----------------------------- 52 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK----------------------------- 52 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence 3699999999999999999996 37999999999999999997543
Q ss_pred ccccccCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCC--------HHHHHhc
Q 009226 97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD 167 (539)
Q Consensus 97 ~~~~~~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s--------~~~vf~~ 167 (539)
.|.+|+ |++.++.. ..+.+++.+.|+..+..+..-...+++. +|++.++|.+ ..+.++.
T Consensus 53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~ 120 (463)
T PRK12416 53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS 120 (463)
T ss_pred ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence 245677 57777554 3567888888887765554433455554 5666666543 3333444
Q ss_pred cCCChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccc
Q 009226 168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (539)
Q Consensus 168 ~~ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~ 247 (539)
..++...|...+ ...... . ...+.+.|+.+|+++..-++..+.++. .+...-+..++ .++++
T Consensus 121 ~~~~~~~~~~~~------~~~~~~-~--------~~~~~~~sv~~~l~~~~~~~~~~~~~~-p~~~~~~~~~~--~~ls~ 182 (463)
T PRK12416 121 TLVSTKGKIVAL------KDFITK-N--------KEFTKDTSLALFLESFLGKELVERQIA-PVLSGVYSGKL--NELTM 182 (463)
T ss_pred CcCCHHHHHHhh------hhhccC-C--------CCCCCCCCHHHHHHHhcCHHHHHHHHH-HHhcccccCCc--ccccH
Confidence 444433332211 111100 0 012346899999997433333333332 21122133332 23555
Q ss_pred hhHHHHHHHHHHhhhh-----------c-cCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEE
Q 009226 248 RDGINRLALYNSSIGR-----------F-QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (539)
Q Consensus 248 ~~~l~~i~~~l~s~g~-----------~-g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~ 315 (539)
...+..+..+....+. + +.....+.++++|++.|+++|++.+.. ++|++|++|++|..+ +++ +
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~ 257 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y 257 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence 4444444333222111 0 011123778999999999999876543 689999999999876 444 5
Q ss_pred EEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC-CCCceEEEeCCCCCC
Q 009226 316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLF 393 (539)
Q Consensus 316 gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~-~~~~~~~~~p~~~~~ 393 (539)
.|++.+|+++.||+||++ |...+..+. .++++++...++ ....+....+.++.+... ......+++|+..
T Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~-- 329 (463)
T PRK12416 258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDEQLPADGTGFIVTENS-- 329 (463)
T ss_pred EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence 677778889999999975 443334443 344555544443 234566666667765321 1123445555432
Q ss_pred CCCCceEEEEEeCCC--CccCCCCcEEEEEE
Q 009226 394 PEQVTSIRVLQLGGN--LAVCPLGMFVLYFS 422 (539)
Q Consensus 394 ~~~~~~v~v~~~ss~--~~~cP~G~~vi~~s 422 (539)
...+-...+.+. ...+|++..++.++
T Consensus 330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~ 357 (463)
T PRK12416 330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMF 357 (463)
T ss_pred ---CCeEEEEEeecCCCCCcCCCCeEEEEEE
Confidence 111222223322 23567777666554
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.89 E-value=4.3e-21 Score=206.03 Aligned_cols=325 Identities=14% Similarity=0.163 Sum_probs=184.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
+|||||||++||+||..|+++| ++|+|||+++++||+++|++.++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g--------------------------------- 48 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--------------------------------- 48 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence 6999999999999999999988 89999999999999999976543
Q ss_pred cCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCH--------HHHHhccCCCh
Q 009226 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL 172 (539)
Q Consensus 102 ~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~--------~~vf~~~~ls~ 172 (539)
+.+|+ |++.++..+ .+.+++.+.|+..+..+..-...+++. +|+++++|... ...+..+.++.
T Consensus 49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T PRK11883 49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP 120 (451)
T ss_pred ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence 34566 465444433 577788888886554333212224443 77777776421 11111122221
Q ss_pred hhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHH
Q 009226 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (539)
Q Consensus 173 ~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~ 252 (539)
.++... ...... .......+.++.+||++. +++...+.++..+....+..++ .++|+..++.
T Consensus 121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 182 (451)
T PRK11883 121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP 182 (451)
T ss_pred HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence 111110 001000 001234568999999863 4444433333222222222222 3355555444
Q ss_pred HHHHHHHhhh-----------hcc-CCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC
Q 009226 253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (539)
Q Consensus 253 ~i~~~l~s~g-----------~~g-~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~ 320 (539)
.+..+....+ ... .....+.++++|++.|+++|++.+... +|++|++|++|..+ ++. +.|.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~ 257 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS 257 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence 4433322111 000 001225689999999999887754322 89999999999876 443 567778
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCce
Q 009226 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399 (539)
Q Consensus 321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 399 (539)
+|+++.||+||++ |...+..+. .++++.+.. ++..+..+.+..+.++.++...+....+.+++.. +.+
T Consensus 258 ~g~~~~~d~vI~a~p~~~~~~l~--~~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 326 (451)
T PRK11883 258 NGGEIEADAVIVAVPHPVLPSLF--VAPPAFALF----KTIPSTSVATVALAFPESATNLPDGTGFLVARNS-----DYT 326 (451)
T ss_pred CCCEEEcCEEEECCCHHHHHHhc--cChhHHHHH----hCCCCCceEEEEEEeccccCCCCCceEEEecCCC-----CCc
Confidence 9999999999975 433333432 122222222 2334556777777788886333333344454321 122
Q ss_pred EEEE-EeCC-CCccCCCCcEEEEEEE
Q 009226 400 IRVL-QLGG-NLAVCPLGMFVLYFSA 423 (539)
Q Consensus 400 v~v~-~~ss-~~~~cP~G~~vi~~st 423 (539)
+..+ ..+. ....+|+|..++..+.
T Consensus 327 ~~~~~~~s~~~~~~~p~g~~~~~~~~ 352 (451)
T PRK11883 327 ITACTWTSKKWPHTTPEGKVLLRLYV 352 (451)
T ss_pred EEEEEeEcCcCCCCCCCCcEEEEEec
Confidence 3332 2232 2456788988877765
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.89 E-value=2.5e-20 Score=202.01 Aligned_cols=353 Identities=14% Similarity=0.162 Sum_probs=192.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
|+...||||||||++||+||..|+++|++|+|+|+++++||++.|...++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------ 50 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------ 50 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC------------------------------
Confidence 35678999999999999999999999999999999999999999965432
Q ss_pred ccccCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHH
Q 009226 99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (539)
Q Consensus 99 ~~~~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~ 177 (539)
+.+|+ |++.++..+ .+.+++.+.+..+....... ..+++. +|+...+|.+..+.+. .+++.++..
T Consensus 51 ---------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~ 116 (479)
T PRK07208 51 ---------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK 116 (479)
T ss_pred ---------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence 34566 477776554 55666666665222211111 122332 7888888876434332 233333222
Q ss_pred HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHH-HHHhcccCCcchhhhhccchhHHHHH--
Q 009226 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL-YAIAMADYDQEVSEYVLKTRDGINRL-- 254 (539)
Q Consensus 178 l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~-~~i~l~~~~~~~~~~~~s~~~~l~~i-- 254 (539)
.+. ....... .....+.++.+|+++..-.+..+.++. +..++ +..++ +++|+..++.++
T Consensus 117 ~~~--~~~~~~~------------~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~~ 178 (479)
T PRK07208 117 CGA--SYLKARL------------RPRKEEDSFEDWVINRFGRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIKG 178 (479)
T ss_pred HHH--HHHHHhc------------CCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCcccC
Confidence 111 1111110 001235899999996322223333332 22222 22222 335665433222
Q ss_pred -------HHHHHhh-h-------hccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe
Q 009226 255 -------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319 (539)
Q Consensus 255 -------~~~l~s~-g-------~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l 319 (539)
...+... + ..+.....+.||++|+++|+++|.+.++..|++|++|++|++|..+. ++.++++..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~ 257 (479)
T PRK07208 179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV 257 (479)
T ss_pred CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence 1111111 0 00100123779999999999999999999999999999999998862 333444443
Q ss_pred --CCCc--EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCCCCCCC
Q 009226 320 --ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFP 394 (539)
Q Consensus 320 --~~G~--~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~~~~~~ 394 (539)
.+|+ ++.||+||++ |...+..++. ++++..............+....+.++++.... . ..+.+|+....
T Consensus 258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~-~-~~~~~~~~~~~- 331 (479)
T PRK07208 258 NDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNLFP-D-NWIYIHDPDVK- 331 (479)
T ss_pred EcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCCCC-C-ceEEecCCCCc-
Confidence 2454 5889999975 4332223221 122222222222333444555555567653211 1 22334432211
Q ss_pred CCCceEEEEEeCC-CCccCCCCc-EEEEEEEeeccc-----cchHHHHHHHHHHHHh
Q 009226 395 EQVTSIRVLQLGG-NLAVCPLGM-FVLYFSALCDEV-----NQGKKLLHAALSALQK 444 (539)
Q Consensus 395 ~~~~~v~v~~~ss-~~~~cP~G~-~vi~~st~~~~~-----~~~~~~l~~~~~~l~~ 444 (539)
.-.+..++. +...+|+|+ ..+.+...+... ..-++.++.+++.|..
T Consensus 332 ----~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~ 384 (479)
T PRK07208 332 ----VGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELAR 384 (479)
T ss_pred ----cceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHH
Confidence 012222332 245679987 344333322211 1234566666666655
No 16
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.88 E-value=1.3e-20 Score=197.65 Aligned_cols=346 Identities=16% Similarity=0.183 Sum_probs=210.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
.|+|||||++||+||++|+++| .+|+|||+.++.||..+|+..+|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G--------------------------------- 48 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG--------------------------------- 48 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC---------------------------------
Confidence 4899999999999999999999 99999999999999999986544
Q ss_pred cCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHHHH
Q 009226 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (539)
Q Consensus 102 ~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l~k 180 (539)
|.+|. ||+.++.+ ...++++.+.|.++.+.+..-...|++. +|+++++|..- ++.-+.+...++..+.+
T Consensus 49 ------~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~ 118 (444)
T COG1232 49 ------FLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR 118 (444)
T ss_pred ------EEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence 55677 57776665 5788999999998887776655556665 89999999864 44433332212333333
Q ss_pred HHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHH
Q 009226 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259 (539)
Q Consensus 181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~-~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~ 259 (539)
++....... .+....+.++.+|+++ |+ +++.+-+.-.+.-.-|..+. +.+|+..+...+.+-..
T Consensus 119 ~~~~~~~~~-----------~~~~~~d~sv~~f~r~~fG--~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~ 183 (444)
T COG1232 119 ALQEFIRPK-----------SWEPKQDISVGEFIRRRFG--EEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAER 183 (444)
T ss_pred HHHhhhccc-----------CCCCCCCcCHHHHHHHHHh--HHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhh
Confidence 333221110 0234567899999985 43 23332221111111122121 33566522222111111
Q ss_pred hhhhc-------cC-----CCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEc
Q 009226 260 SIGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS 327 (539)
Q Consensus 260 s~g~~-------g~-----~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~A 327 (539)
..+.. +. ..+.|.++++|++++++++.+.+... |+++++|+.|..+ ... +++.+.+|+++.|
T Consensus 184 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~ 257 (444)
T COG1232 184 KYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITA 257 (444)
T ss_pred hhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEc
Confidence 11110 00 01347788999999999999877665 9999999999876 222 3455678999999
Q ss_pred CEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCC-CCCCCCceEEEeCCCCCCCCCCceEEEEEe
Q 009226 328 HKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQL 405 (539)
Q Consensus 328 d~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~-l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ 405 (539)
|.||++ |.+.++.++.+ ...... + .......++.++..++.+ ....+++..+.+|.... . +.....
T Consensus 258 D~VI~t~p~~~l~~ll~~--~~~~~~---~-~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~-----~-~~a~~~ 325 (444)
T COG1232 258 DGVISTAPLPELARLLGD--EAVSKA---A-KELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP-----Y-ILAITF 325 (444)
T ss_pred ceEEEcCCHHHHHHHcCC--cchhhh---h-hhccccceEEEEEEeccccccCCCCceEEEEecCCC-----c-ceeEEE
Confidence 999975 55554554322 111111 1 112233466666667774 33344566777764331 1 333333
Q ss_pred CCC--CccCCCCcEEEEEEEeecccc-----chHHHHHHHHHHHHhh
Q 009226 406 GGN--LAVCPLGMFVLYFSALCDEVN-----QGKKLLHAALSALQKL 445 (539)
Q Consensus 406 ss~--~~~cP~G~~vi~~st~~~~~~-----~~~~~l~~~~~~l~~~ 445 (539)
.+. ....|+|+.++++........ .-++.++.+++-|-+.
T Consensus 326 ~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~ 372 (444)
T COG1232 326 HSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKL 372 (444)
T ss_pred ecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHH
Confidence 333 467799999999987554321 1256666666666554
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.88 E-value=5.9e-20 Score=197.70 Aligned_cols=294 Identities=17% Similarity=0.187 Sum_probs=178.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
+|+|||+|++||+||..|+++|++|+|+|+++++||++.|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------ 44 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------ 44 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence 58999999999999999999999999999999999999986421
Q ss_pred CCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeE-ccCCcee--ecC---CCH---HHHHh-ccCCCh
Q 009226 104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL 172 (539)
Q Consensus 104 ~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~-~~~g~l~--~vP---~s~---~~vf~-~~~ls~ 172 (539)
..+.+|. |++++... ..+.+++.+.|+...+.|......+.. ..++... ..| ... .++++ ...++.
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (453)
T TIGR02731 45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW 121 (453)
T ss_pred --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence 1234566 47766443 357788888888766665543332221 1122222 122 211 12222 224555
Q ss_pred hhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHH--HhcccCCcchhhhhccchh
Q 009226 173 MEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYA--IAMADYDQEVSEYVLKTRD 249 (539)
Q Consensus 173 ~ek~~l~k-fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~--i~l~~~~~~~~~~~~s~~~ 249 (539)
.+|..+.. +....... .+...++.+.|+.+|+++.+.++.+.+.+... .++. ..++ +++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~--~~~p--~~~S~~~ 187 (453)
T TIGR02731 122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN--FINP--DELSMTV 187 (453)
T ss_pred HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC--CCCH--HHHHHHH
Confidence 55554332 11111000 01123456789999999999998877643322 2222 2232 3467777
Q ss_pred HHHHHHHHHHhhhhccCCCccEEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc-----
Q 009226 250 GINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ----- 323 (539)
Q Consensus 250 ~l~~i~~~l~s~g~~g~~~ga~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~----- 323 (539)
++..+..++. ..+|. ...+..+| ++.++++|.+.++..|++|++|++|++|..++ ++++++|++.+|+
T Consensus 188 ~~~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-~~~v~~v~~~~~~~~~~~ 261 (453)
T TIGR02731 188 VLTALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-DGSVKHFVLADGEGQRRF 261 (453)
T ss_pred HHHHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-CCCEEEEEEecCCCCcee
Confidence 7666655442 22231 12345555 47899999999999999999999999998652 6667888887766
Q ss_pred EEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226 324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (539)
Q Consensus 324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~ 378 (539)
++.||.||++ |...+..++ +...+-....+.+. ......+.+..+.+++++..
T Consensus 262 ~~~a~~VI~a~p~~~~~~lL-~~~~~~~~~~~~~~-~~~~~~~~~v~l~~~~~~~~ 315 (453)
T TIGR02731 262 EVTADAYVSAMPVDIFKLLL-PQPWKQMPFFQKLN-GLEGVPVINVHIWFDRKLTT 315 (453)
T ss_pred EEECCEEEEcCCHHHHHhhC-chhhhcCHHHHHhh-cCCCCcEEEEEEEEccccCC
Confidence 7999999964 433334443 21110011112221 11244677888889998753
No 18
>PLN02612 phytoene desaturase
Probab=99.87 E-value=1.3e-19 Score=199.45 Aligned_cols=293 Identities=14% Similarity=0.155 Sum_probs=181.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
..||+|||+|++||+||.+|+++|++|+++|+++++||++.++...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~---------------------------------- 138 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE---------------------------------- 138 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence 4789999999999999999999999999999999999999997531
Q ss_pred cCCCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEc-cCCcee--e----cCCC---HHHHHh-ccC
Q 009226 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS 169 (539)
Q Consensus 102 ~~~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~-~~g~l~--~----vP~s---~~~vf~-~~~ 169 (539)
.++.+|. |+++++... .+.++|.+.|+...++|......+... .++... . .|.. ..++++ ...
T Consensus 139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ 213 (567)
T PLN02612 139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM 213 (567)
T ss_pred ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence 1234566 477765433 577888888887776665543333221 122222 1 2222 112332 234
Q ss_pred CChhhHHHHHH-HHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHHHH-hcccCCcchhhhhcc
Q 009226 170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLYAI-AMADYDQEVSEYVLK 246 (539)
Q Consensus 170 ls~~ek~~l~k-fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~-~l~~~i-~l~~~~~~~~~~~~s 246 (539)
+++.+|..+.. ++... .. ......++.+.|+.+|+++.+.++.+.+ ++...+ ++. ..++ +++|
T Consensus 214 ls~~~kl~~~~~~~~~~---~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~--~~~p--~~~S 279 (567)
T PLN02612 214 LTWPEKIKFAIGLLPAI---VG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALN--FINP--DELS 279 (567)
T ss_pred CCHHHHHHHHHhhhHHh---cc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhc--CCCH--HHhh
Confidence 45555443221 11100 00 0011234557899999999999987765 332211 221 2222 3356
Q ss_pred chhHHHHHHHHHHhhhhccCCCccEEeecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEE
Q 009226 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI 325 (539)
Q Consensus 247 ~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i 325 (539)
+...+..+..++.. +.| ....++.|+. ..|+++|.+.++..||+|++|++|++|..++ ++++++|++.+|+++
T Consensus 280 ~~~~l~~l~~~l~~--~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~ 353 (567)
T PLN02612 280 MQCILIALNRFLQE--KHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTNGSVV 353 (567)
T ss_pred HHHHHHHHHHHHhc--cCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECCCcEE
Confidence 66666555544331 222 1245676664 5789999998888999999999999998853 666778888899999
Q ss_pred EcCEEEEC-CCCCCCCCCcccc--hhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226 326 LSHKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 326 ~Ad~VI~~-p~~~~~~l~~~~~--~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~ 377 (539)
.||+||++ |...+..++.... .+++...+.+ ....+.+..+.+++|+.
T Consensus 354 ~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l----~~~~v~~v~l~~dr~~~ 404 (567)
T PLN02612 354 EGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKL----VGVPVINVHIWFDRKLK 404 (567)
T ss_pred ECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhc----CCCCeEEEEEEECcccC
Confidence 99999975 4433333321111 1223233222 23456777777899874
No 19
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.84 E-value=5.6e-19 Score=190.63 Aligned_cols=268 Identities=17% Similarity=0.184 Sum_probs=170.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------ 44 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------ 44 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence 58999999999999999999999999999999999999996321
Q ss_pred CCCCeEEecCCCEEEecCh-HHHHHHhcCCcccccccccccceeeEccCCcee--------ecC-CCHHHHHhccCCChh
Q 009226 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLC--------SVP-DSRAAIFKDKSLGLM 173 (539)
Q Consensus 104 ~~~~f~ldl~Gp~ll~~~~-~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~--------~vP-~s~~~vf~~~~ls~~ 173 (539)
.+|.+|. |+++++... .+.+++.+.|+...+.+......|.. .++++. ..| .....+++.+.+++.
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~ 120 (474)
T TIGR02732 45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV 120 (474)
T ss_pred --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence 2345666 588776544 56777777887655444432222221 133322 123 233467777888888
Q ss_pred hHHHHHHHHHH---HHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhH
Q 009226 174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (539)
Q Consensus 174 ek~~l~kfl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~ 250 (539)
+|..+.+.+.. ...... .. .....+....+.|+.+|+++++.++.+.+-+...+....+..++ +++|+..+
T Consensus 121 dklr~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~ 194 (474)
T TIGR02732 121 DKLRNALALGTSPIVRGLVD-YD---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM 194 (474)
T ss_pred HHHHHHHHhhhhHHHhhccc-cc---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 88876553311 111100 00 00011223456999999999988876443333222222122222 34677776
Q ss_pred HHHHHHHHHhhhhccCCCccEEeecCCcCh-HHHHHHHHHHHCCcEEEeCCcceEEEEecC-CC--cEEEEEeCCC---c
Q 009226 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q 323 (539)
Q Consensus 251 l~~i~~~l~s~g~~g~~~ga~lyp~gG~ge-L~qal~r~~a~~Gg~i~L~~~V~~I~~~~~-~g--~~~gV~l~~G---~ 323 (539)
+..++.+. .++.+ .-+.++++|.++ +.+.+.+.++..||+|+++++|++|..+.. ++ ++++|++.+| +
T Consensus 195 ~~~~~~~~--~~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~ 269 (474)
T TIGR02732 195 LTIFMLFA--AKTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK 269 (474)
T ss_pred HHHHHHHH--hCCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence 66555333 22333 126789999876 778899999999999999999999987621 12 3677777544 5
Q ss_pred EEEcCEEEEC-CCCCCCCCC
Q 009226 324 DILSHKLVLD-PSFTVPGSL 342 (539)
Q Consensus 324 ~i~Ad~VI~~-p~~~~~~l~ 342 (539)
++.||+||++ |.+....|+
T Consensus 270 ~~~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 270 VIKADAYVAACDVPGIKRLL 289 (474)
T ss_pred EEECCEEEECCChHHHHhhC
Confidence 6899999974 544444543
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.83 E-value=1.9e-18 Score=188.58 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=170.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
+..+|+|||+|++||++|..|+++|++|+++|+++++||++.++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~--------------------------------- 120 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK--------------------------------- 120 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence 34699999999999999999999999999999999999999997421
Q ss_pred ccCCCCCeEEecCCCEEEecC-hHHHHHHhcCCcccccccccccceeeEccCCcee----ecC--CC---HHHHHhccCC
Q 009226 101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL 170 (539)
Q Consensus 101 ~~~~~~~f~ldl~Gp~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~----~vP--~s---~~~vf~~~~l 170 (539)
..+.+|. |+++++.. ..+.++|.+.|+...+.+..-...|. ..+|.+. ++| .. ...+++...+
T Consensus 121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L 193 (569)
T PLN02487 121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL 193 (569)
T ss_pred -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence 1244566 57776543 36788888888876555443222222 2244442 122 21 1255566778
Q ss_pred ChhhHHHHHHHH--H-HHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccc
Q 009226 171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (539)
Q Consensus 171 s~~ek~~l~kfl--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~ 247 (539)
++.+|..+..-+ . .+..... .. .....+....+.|+.+|+++++.++.+.+-++..+....+..+. +++|+
T Consensus 194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA 267 (569)
T PLN02487 194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA 267 (569)
T ss_pred CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence 877777653211 1 0111000 00 00011223456899999999888774443333322222222222 44677
Q ss_pred hhHHHHHHHHHHhhhhccCCCccEEeecCCcCh-HHHHHHHHHHHCCcEEEeCCcceEEEEecC-CC--cEEEEEe---C
Q 009226 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A 320 (539)
Q Consensus 248 ~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~ge-L~qal~r~~a~~Gg~i~L~~~V~~I~~~~~-~g--~~~gV~l---~ 320 (539)
..++..+..+. .+. . .+-+.||+||.++ |++.+++.++..||+|+++++|++|..+.+ +| ++++|++ .
T Consensus 268 ~~~~~vl~~~~--~~~-~--~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 268 RCMLTIFSLFA--TKT-E--ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHh--hcC-C--cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 76666553321 111 1 1226799999985 999999999999999999999999998731 22 3788887 3
Q ss_pred CCcEEEcCEEEEC-CCCCCCCC
Q 009226 321 SGQDILSHKLVLD-PSFTVPGS 341 (539)
Q Consensus 321 ~G~~i~Ad~VI~~-p~~~~~~l 341 (539)
+++++.||.||++ |.+.+..|
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred CceEEECCEEEECCCHHHHHHh
Confidence 4557899999975 43343444
No 21
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.83 E-value=1.3e-19 Score=183.70 Aligned_cols=151 Identities=24% Similarity=0.251 Sum_probs=96.1
Q ss_pred cEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC--CCCCCCCcccch
Q 009226 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSLASSHQ 347 (539)
Q Consensus 270 a~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~--~~~~~l~~~~~~ 347 (539)
++.||.||||+++.++++.+..+|++|.+++.|++|..+ +|+++||+++||++++++.||+|.+ .++.+|+ + ..
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl-p-~e 330 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL-P-GE 330 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC-C-Cc
Confidence 477999999999999999999999999999999999998 7999999999999999999998754 3444543 2 22
Q ss_pred hhhhhh--hhcccCCCcceEEEE-EEEe--cCCCCCCCCc-eEE--------------EeCCCCCCCCCCceEEEEEeCC
Q 009226 348 QLQESF--QAFSLSDNKGKVARG-ICIT--RSSLKPDLSN-FLV--------------IFPPRSLFPEQVTSIRVLQLGG 407 (539)
Q Consensus 348 ~l~~~~--~~l~~~~~~~~vsr~-i~I~--~~~l~~~~~~-~~~--------------~~p~~~~~~~~~~~v~v~~~ss 407 (539)
.+|++. +++.......+ .++ .++. ..+-.|-++. .-+ .-|...+. ...+.|++...|+
T Consensus 331 ~LPeef~i~q~d~~spv~k-~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~-s~~pvI~~siPS~ 408 (561)
T KOG4254|consen 331 ALPEEFVIQQLDTVSPVTK-DKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLA-SHRPVIELSIPSS 408 (561)
T ss_pred cCCchhhhhhccccccccc-ccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhccc-ccCCeEEEecccc
Confidence 355543 12211111000 011 1111 1110111111 111 11111111 1245688888776
Q ss_pred CC-ccCCCCcEEEEEEEeec
Q 009226 408 NL-AVCPLGMFVLYFSALCD 426 (539)
Q Consensus 408 ~~-~~cP~G~~vi~~st~~~ 426 (539)
-+ ..+|+|+.||++-+...
T Consensus 409 lDptlappg~Hvl~lf~~~t 428 (561)
T KOG4254|consen 409 LDPTLAPPGKHVLHLFTQYT 428 (561)
T ss_pred cCCCcCCCCceEEEEeccCC
Confidence 64 78999999999988654
No 22
>PLN02268 probable polyamine oxidase
Probab=99.79 E-value=3.5e-18 Score=182.91 Aligned_cols=273 Identities=14% Similarity=0.151 Sum_probs=156.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (539)
.+|||||||++||+||..|.++|++|+|||+++++||++.|....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~----------------------------------- 45 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF----------------------------------- 45 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC-----------------------------------
Confidence 379999999999999999999999999999999999999985432
Q ss_pred CCCCCeEEecCCCEEEec---ChHHHHHHhcCCcccccccccccceeeEcc--------CCceeecCCCHHHHHhccCCC
Q 009226 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDA--------DAKLCSVPDSRAAIFKDKSLG 171 (539)
Q Consensus 103 ~~~~~f~ldl~Gp~ll~~---~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~--------~g~l~~vP~s~~~vf~~~~ls 171 (539)
.+.+|+ |++++.. ..++.+++.+.|+..+.. ..+..+++.. ++....+|.+....
T Consensus 46 ----g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 111 (435)
T PLN02268 46 ----GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQELVTK------- 111 (435)
T ss_pred ----CcccCC-CCeeEeccCCCchHHHHHHHhCCceEec--cCCccccccccccccceecCCCCCCCHHHHHH-------
Confidence 234577 5888753 235777888888754321 0111111110 11111222110000
Q ss_pred hhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC-CCh------hHHHHHHHHHh-cc-cCCcchhh
Q 009226 172 LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPH------KIKSIVLYAIA-MA-DYDQEVSE 242 (539)
Q Consensus 172 ~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~-l~~------~l~~~l~~~i~-l~-~~~~~~~~ 242 (539)
-+..+.+++..+.... .....+.|+.+|++++. ..+ ..++++.+.+. +. -+..++
T Consensus 112 --~~~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 175 (435)
T PLN02268 112 --VGETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA-- 175 (435)
T ss_pred --HHHHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--
Confidence 0111122222221110 01234678888876532 111 22333321110 00 012222
Q ss_pred hhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC
Q 009226 243 YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (539)
Q Consensus 243 ~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G 322 (539)
+++|+... .. ...+. |.-.+..+|++.|+++|++ |..|++|++|++|..+ ++. +.|++.+|
T Consensus 176 ~~ls~~~~-------~~-~~~~~---g~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g 236 (435)
T PLN02268 176 DTISLKSW-------DQ-EELLE---GGHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDG 236 (435)
T ss_pred HhCchhhc-------CC-ccccC---CCceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCC
Confidence 22333210 00 00010 1123677899999998754 5579999999999876 333 46777889
Q ss_pred cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009226 323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (539)
Q Consensus 323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~ 379 (539)
+++.||+||+. |...+......+.|++|+.+....++..++.+.|.++.+++++-+.
T Consensus 237 ~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~ 294 (435)
T PLN02268 237 TTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPN 294 (435)
T ss_pred cEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCC
Confidence 89999999964 5444333223456778776665555566788999999999986443
No 23
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.79 E-value=5.2e-17 Score=172.37 Aligned_cols=276 Identities=16% Similarity=0.154 Sum_probs=167.1
Q ss_pred HHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccCCCCCeEEecCCC
Q 009226 36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP 115 (539)
Q Consensus 36 ~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ldl~Gp 115 (539)
+||..|+++|++|+|||+++++||++.|++.++. .+.+|+ |+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~ 42 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ 42 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence 4899999999999999999999999999876431 123566 58
Q ss_pred EEEecC-hHHHHHHhcCCcccccccccccceeeEccCCce-------eecCCC-HHHHHhccCCChhhHHHHHHHHHHHH
Q 009226 116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-------CSVPDS-RAAIFKDKSLGLMEKNQLMRFFKLVQ 186 (539)
Q Consensus 116 ~ll~~~-~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l-------~~vP~s-~~~vf~~~~ls~~ek~~l~kfl~~~~ 186 (539)
+.++.. ..+.+++.+.|+.....+. .....++..++.. .+.|.. ...+.+.+.+++.+|..+.+++..+.
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGP-RLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhcc-cCCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 877654 3677888888887665542 1122222223331 112221 12334456677888877776654433
Q ss_pred hhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccC
Q 009226 187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN 266 (539)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~ 266 (539)
... ..++.+.|+.+||++++.++.+.+.+...+....+..++ +++|+..++..+.. .+.....
T Consensus 122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~ 184 (419)
T TIGR03467 122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA 184 (419)
T ss_pred hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence 211 123457899999999888877776544322222122232 33555554443322 1211111
Q ss_pred CCccEEeecCCcChHH-HHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcc
Q 009226 267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS 344 (539)
Q Consensus 267 ~~ga~lyp~gG~geL~-qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~ 344 (539)
...+.||++|++++. ++|.+.++..|++|++|++|++|..+ ++++..+...+|+++.||+||++ |...+..++ +
T Consensus 185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-~ 260 (419)
T TIGR03467 185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-P 260 (419)
T ss_pred -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC-C
Confidence 112789999988766 55888888889999999999999886 44433222257888999999975 444434442 2
Q ss_pred cchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (539)
Q Consensus 345 ~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l 376 (539)
++...+ .+ +...+..+.+..+.+++|+
T Consensus 261 -~~~~~~---~l-~~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 261 -GEDLGA---LL-TALGYSPITTVHLRLDRAV 287 (419)
T ss_pred -CchHHH---HH-hhcCCcceEEEEEEeCCCc
Confidence 112221 22 2224455666777788887
No 24
>PLN02676 polyamine oxidase
Probab=99.77 E-value=3.3e-17 Score=177.23 Aligned_cols=286 Identities=11% Similarity=0.084 Sum_probs=160.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
+..+||||||||++||+||..|++.|. +|+|||+++++||++.+...++
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g------------------------------ 73 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG------------------------------ 73 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC------------------------------
Confidence 356899999999999999999999998 6999999999999999865432
Q ss_pred ccccCCCCCeEEecCCCEEEec-----ChHHHHHHhcCCccccc-ccccccceeeEccCCceeecCCCHHHHHhccCCCh
Q 009226 99 RLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL 172 (539)
Q Consensus 99 ~~~~~~~~~f~ldl~Gp~ll~~-----~~~lv~~L~~s~~~~y~-ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~ 172 (539)
+.+|+ |++++.. ...+.+++.+.|+..+. .+... ...++..+|+.. |. +...
T Consensus 74 ---------~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~------ 131 (487)
T PLN02676 74 ---------VSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ------ 131 (487)
T ss_pred ---------eEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH------
Confidence 34566 4676632 34567777777776542 12221 222333355433 21 1100
Q ss_pred hhHHHHHHHHHHHHhhcccCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHhcccCCcchhhhhccchh
Q 009226 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (539)
Q Consensus 173 ~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~efL~~~~-l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~ 249 (539)
.-...+.++..++....... . ..++.+.++ .+++.+.. ..+.... ..+......+..++ ..+|..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~ 200 (487)
T PLN02676 132 KSMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKN 200 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhh
Confidence 00011111112111111000 0 012334444 33343322 2221111 11111100011111 1233322
Q ss_pred HHHHHHHHHHhhhhccCCCccEEee-cCCcChHHHHHHHHHHH------CCcEEEeCCcceEEEEecCCCcEEEEEeCCC
Q 009226 250 GINRLALYNSSIGRFQNALGALIYP-IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (539)
Q Consensus 250 ~l~~i~~~l~s~g~~g~~~ga~lyp-~gG~geL~qal~r~~a~------~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G 322 (539)
.+. ......+|. ..+... ++|++.|+++|++.... .++.|+||++|++|..+ ++. +.|++.+|
T Consensus 201 ~~~-----~~~~~~~g~--~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~G 270 (487)
T PLN02676 201 TEP-----NPTFVDFGE--DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTEDG 270 (487)
T ss_pred cCc-----ccccccCCC--ceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECCC
Confidence 110 001111221 113222 68999999998875422 24689999999999876 333 46888899
Q ss_pred cEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226 323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (539)
Q Consensus 323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~ 378 (539)
++++||+||+. |...+....+.+.|+||+.+....++..++.+.|.++.+++||=+
T Consensus 271 ~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~ 327 (487)
T PLN02676 271 SVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWP 327 (487)
T ss_pred CEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCC
Confidence 99999999975 444434312367889998777666667788999999999999643
No 25
>PLN02529 lysine-specific histone demethylase 1
Probab=99.77 E-value=2.6e-16 Score=175.30 Aligned_cols=279 Identities=14% Similarity=0.107 Sum_probs=164.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
...||+|||||++||+||..|+++|++|++||+++++||+..|..+.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~-------------------------------- 206 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR-------------------------------- 206 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence 467999999999999999999999999999999999999999976421
Q ss_pred ccCCCCCeEEecCCCEEEecCh--HHHHHHhcCCcccccccccccce-eeEccCCceeecCCCHHHHHhccCCChhhHHH
Q 009226 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (539)
Q Consensus 101 ~~~~~~~f~ldl~Gp~ll~~~~--~lv~~L~~s~~~~y~ef~~v~~~-~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~ 177 (539)
....+.+|+ |+++++... ++..+..+.++.-+ .++.. .++..+|... +..... .+ + ..
T Consensus 207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v--~~~~~~-----~~---~-~~ 267 (738)
T PLN02529 207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLH----KVRDNCPLYKPDGALV--DKEIDS-----NI---E-FI 267 (738)
T ss_pred ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCc--chhhhh-----hH---H-HH
Confidence 011245687 588885543 45555555554322 11111 1333455432 111100 00 0 01
Q ss_pred HHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHhcccCCcchhhhhccchhHH
Q 009226 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251 (539)
Q Consensus 178 l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~------l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l 251 (539)
+.+++..+........ ....+.|+.+|++++. +++.-+.++.+.++...+.... .++.
T Consensus 268 ~~~~l~~~~~l~~~~~---------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~---~~s~---- 331 (738)
T PLN02529 268 FNKLLDKVTELRQIMG---------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAG---CLSD---- 331 (738)
T ss_pred HHHHHHHHHHHHHhcc---------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCC---ChHH----
Confidence 2222222222111000 1234678999997543 5555555554332211111110 0111
Q ss_pred HHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009226 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (539)
Q Consensus 252 ~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI 331 (539)
..+..+....+ +.. .|...+..||++.|+++|++ +..|+||++|++|..+ ++. +.|+ .+++++.||+||
T Consensus 332 LSl~~~~~~~~-~e~-~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VI 400 (738)
T PLN02529 332 LSAAYWDQDDP-YEM-GGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVL 400 (738)
T ss_pred hhhhHhhhccc-ccc-CCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEE
Confidence 11122222111 111 13356789999999998875 3359999999999886 333 4565 466789999999
Q ss_pred EC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226 332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 332 ~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~ 377 (539)
++ |...+....+.+.|+||+.+....++..++.+.+.++.++++|=
T Consensus 401 VTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW 447 (738)
T PLN02529 401 CTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW 447 (738)
T ss_pred ECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence 75 44333322234678888877766677788899999999999953
No 26
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.74 E-value=1.5e-15 Score=169.91 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=162.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
...||+|||||++||+||..|++.|++|+|+|+++++||+..++.+.+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~------------------------------- 285 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD------------------------------- 285 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence 4579999999999999999999999999999999999999999876531
Q ss_pred ccCCCCCeEEecCCCEEEecC--hHHHHHHhcCCcccccccccccceeeEccCCceee--cCCCHHHHHhccCCChhhHH
Q 009226 101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCS--VPDSRAAIFKDKSLGLMEKN 176 (539)
Q Consensus 101 ~~~~~~~f~ldl~Gp~ll~~~--~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~--vP~s~~~vf~~~~ls~~ek~ 176 (539)
.-.+.+|+ |++++... ..+..++...|+..+. .....+ ++..+|+... ++... + .
T Consensus 286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~~-~~~~~~--~~~~dG~~~~~~~~~~v------------~-~ 344 (808)
T PLN02328 286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLHK-VRDICP--LYLPDGKAVDAEIDSKI------------E-A 344 (808)
T ss_pred ----CcceeccC-CceeecCCCccHHHHHHHHcCCceEe-cCCCce--EEeCCCcCcchhhhhhH------------H-H
Confidence 01234567 57777543 2466666677764321 111111 2233555331 11110 1 1
Q ss_pred HHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhcccCCcchhhhhccchhH
Q 009226 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (539)
Q Consensus 177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~------~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~ 250 (539)
.+.+++..+.++..... . .....+.++.+|++++ ..++..+.++...++...+.... ....
T Consensus 345 ~f~~lL~~~~klr~~~~---~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs------~ls~ 411 (808)
T PLN02328 345 SFNKLLDRVCKLRQAMI---E----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS------LMSN 411 (808)
T ss_pred HHHHHHHHHHHHHHhhh---h----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh------hHHH
Confidence 22333333222211000 0 0112457888888743 23444444333222211111100 0011
Q ss_pred HHHHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEE
Q 009226 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330 (539)
Q Consensus 251 l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~V 330 (539)
+. +..+.... .+ ...|.+.+..||++.|+++|++.+ + |++|++|++|..+ ++. +.| +.+|+++.||+|
T Consensus 412 LS-l~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~V 479 (808)
T PLN02328 412 LS-MAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMV 479 (808)
T ss_pred HH-hhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEE
Confidence 11 11111110 01 111335677899999999997643 3 9999999999886 333 344 457889999999
Q ss_pred EEC-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226 331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 331 I~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~ 377 (539)
|++ |...+....+.+.|+||+.+....++..++.+.|.++.+++++=
T Consensus 480 IvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 480 LCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred EECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 975 44443322234677888877665567778899999999999853
No 27
>PLN02568 polyamine oxidase
Probab=99.74 E-value=2.2e-16 Score=172.20 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=78.3
Q ss_pred ccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCC----c
Q 009226 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----A 343 (539)
Q Consensus 269 ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~----~ 343 (539)
|.++...+|++.|+++|++.+ .++.|++|++|++|..+ ++. +.|++++|+++.||+||++ |...+..-. .
T Consensus 232 g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i 306 (539)
T PLN02568 232 GEEITIAKGYLSVIEALASVL--PPGTIQLGRKVTRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSG 306 (539)
T ss_pred CCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEEEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccc
Confidence 446788999999999987754 36789999999999876 333 4677889999999999975 443333210 2
Q ss_pred ccchhhhhhhhhcccCCCcceEEEEEEEecCCC
Q 009226 344 SSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (539)
Q Consensus 344 ~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l 376 (539)
.++|+||+.+....++..++.+.|.++.+++++
T Consensus 307 ~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 307 LFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred eecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 477889887766556777889999999999985
No 28
>PLN03000 amine oxidase
Probab=99.72 E-value=3.8e-15 Score=166.80 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=158.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccccccccccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
...||+|||||++||.||..|++.|++|+|+|+++++||++.|..+++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g-------------------------------- 230 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA-------------------------------- 230 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence 468999999999999999999999999999999999999999987543
Q ss_pred ccCCCCCeEEecCCCEEEecCh--HHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHHHHhccCCChhhHHHH
Q 009226 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 101 ~~~~~~~f~ldl~Gp~ll~~~~--~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~vf~~~~ls~~ek~~l 178 (539)
....+.+|+ |++++.... .+..++.+.|+..+ .+..-.+ ++..+|+.. |.+....+ ...+
T Consensus 231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~--ly~~~Gk~v--~~~~~~~v---------e~~f 292 (881)
T PLN03000 231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCP--LYRVDGKPV--DPDVDLKV---------EVAF 292 (881)
T ss_pred ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCe--EEEeCCcCC--chhhhhhH---------HHHH
Confidence 012356788 588886543 45555666776532 2222222 223366543 32211000 0111
Q ss_pred HHHHHHHHhhcccCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHhcccCCcchhhhhccchhHHH
Q 009226 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~------~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~ 252 (539)
.+++..+.++..... ....+.++.++++. ..+.+..+.++...++...+... +....+.
T Consensus 293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~a------s~ls~LS 357 (881)
T PLN03000 293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANA------GLVSKLS 357 (881)
T ss_pred HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccc------cCHHHHH
Confidence 222222211110000 00113344443331 12233223332221111111100 0001111
Q ss_pred HHHHHHHhhhhccCCCccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 253 ~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
+..+.... .+.. .|.+....||++.|+++|++.+ .|+|+++|++|..+ ++. +.|++ +++++.||+||+
T Consensus 358 -l~~wdqd~-~~e~-~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv 425 (881)
T PLN03000 358 -LAFWDQDD-PYDM-GGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC 425 (881)
T ss_pred -HHHhhhcc-cccC-CCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence 11111111 1111 1235567899999999998644 39999999999876 333 45654 456899999997
Q ss_pred C-CCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~ 377 (539)
+ |...+....+.+.|+||+.+....++..++.+.|.++.++++|=
T Consensus 426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW 471 (881)
T PLN03000 426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFW 471 (881)
T ss_pred cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 5 54444421235788999887766677788999999999999854
No 29
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.71 E-value=8e-17 Score=165.77 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=76.2
Q ss_pred EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhh
Q 009226 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL 349 (539)
Q Consensus 271 ~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l 349 (539)
.+.+.|||+.|++||+ .++|..|.++++|.+|.+++ +| +.|+..+.+++.+|.+|+. |...+.. +.++|.+
T Consensus 201 ~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l 272 (450)
T COG1231 201 MLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLL 272 (450)
T ss_pred hhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhh--cccCCCC
Confidence 4567799999999986 47899999999999999872 33 5677666578999999976 4333333 3567777
Q ss_pred hhhhhhcccCCCcceEEEEEEEecCCCC
Q 009226 350 QESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 350 ~~~~~~l~~~~~~~~vsr~i~I~~~~l~ 377 (539)
++.+++..+...++...|..+-+++||=
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFW 300 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPFW 300 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchhh
Confidence 7777777677888888898888999973
No 30
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.65 E-value=2.1e-14 Score=154.51 Aligned_cols=243 Identities=13% Similarity=0.201 Sum_probs=146.7
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCcccccc
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE 92 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (539)
+-++...+|+|||||++||+||++|++. |++|+|||+++++||++.++....
T Consensus 17 ~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------------ 72 (576)
T PRK13977 17 PEGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------------ 72 (576)
T ss_pred CCCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc------------------------
Confidence 3445567999999999999999999996 689999999999999998864321
Q ss_pred ccccccccccCCCCCeEEecCCCEEEecChHHHHHHhcC------C---ccccccccccccee----eEccCCceeecCC
Q 009226 93 ISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF----MLDADAKLCSVPD 159 (539)
Q Consensus 93 ~~~~~~~~~~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s------~---~~~y~ef~~v~~~~----~~~~~g~l~~vP~ 159 (539)
.+|.++. ||.+...-..+.++|.+. | .++|..|...++.+ +...+|....
T Consensus 73 -------------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d--- 135 (576)
T PRK13977 73 -------------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD--- 135 (576)
T ss_pred -------------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE---
Confidence 1233343 344322222444444222 1 23455555554442 1111222222
Q ss_pred CHHHHHhccCCCh--hhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCC
Q 009226 160 SRAAIFKDKSLGL--MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237 (539)
Q Consensus 160 s~~~vf~~~~ls~--~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~ 237 (539)
...+.+ +.+..|++++- .. .++..+.++.||+++..+....-. +...+..+.
T Consensus 136 -------~~~~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~---~w~t~FaF~ 189 (576)
T PRK13977 136 -------TDKFGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWY---YWRTMFAFE 189 (576)
T ss_pred -------CcCCCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHH---HHHHHHCCc
Confidence 222333 33333444322 11 123456889999987444433222 222222222
Q ss_pred cchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCC--CcE
Q 009226 238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSY 314 (539)
Q Consensus 238 ~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~--g~~ 314 (539)
+..|+.+....+.+|+.-+.+.+... ++.+.+|- .-.|.+.|.+.++..|+++++|++|++|..+.++ +++
T Consensus 190 -----~whSA~E~rry~~rf~~~~~~l~~~s-~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~V 263 (576)
T PRK13977 190 -----KWHSALEMRRYMHRFIHHIGGLPDLS-GLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTA 263 (576)
T ss_pred -----hhhHHHHHHHHHHHHHHhhccCCccc-cccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEE
Confidence 23578887777878876665554432 24566665 3589999999999999999999999999874223 668
Q ss_pred EEEEeC-CCc--E---EEcCEEEE
Q 009226 315 KGVRLA-SGQ--D---ILSHKLVL 332 (539)
Q Consensus 315 ~gV~l~-~G~--~---i~Ad~VI~ 332 (539)
++|.+. +|+ + ..+|.||+
T Consensus 264 tgI~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 264 TAIHLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred EEEEEEeCCceeEEEecCCCEEEE
Confidence 888774 332 2 35777874
No 31
>PLN02976 amine oxidase
Probab=99.59 E-value=9.5e-14 Score=159.63 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=77.2
Q ss_pred ccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecC-------CCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 009226 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPG 340 (539)
Q Consensus 269 ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~-------~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~ 340 (539)
|......+|++.|+++|++.+ .|+||++|++|..... ++.-+.|.+.+|+++.||+||++ |...+..
T Consensus 926 G~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKa 1000 (1713)
T PLN02976 926 GAHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKA 1000 (1713)
T ss_pred CceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhh
Confidence 345678999999999987643 3999999999987310 12225677889999999999975 4333332
Q ss_pred CCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCC
Q 009226 341 SLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (539)
Q Consensus 341 l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~ 378 (539)
-.+.+.|+||+.+....++..++.+.|.++.+++||-+
T Consensus 1001 g~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976 1001 ETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred cccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence 11358889998776655677788999999999998643
No 32
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.58 E-value=2.5e-14 Score=153.75 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=78.0
Q ss_pred EeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhh
Q 009226 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQ 350 (539)
Q Consensus 272 lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~ 350 (539)
....+|...+.++++. |..|+++..|.+|.... ++. +.|+..++..+.+|+||+. |-..+..-.+.+.|+||
T Consensus 212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 4557888888887654 99999999999999873 443 3455566666999998853 43333331246888999
Q ss_pred hhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeCC
Q 009226 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPP 389 (539)
Q Consensus 351 ~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p~ 389 (539)
..++...++...+.+.+.++.+++.+=..........|+
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~ 323 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPE 323 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccc
Confidence 988877777778889999999998854322234445543
No 33
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.56 E-value=1.9e-12 Score=131.56 Aligned_cols=245 Identities=18% Similarity=0.228 Sum_probs=147.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEE--EeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVL--HLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~Vl--vlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
..+|+|+|||++||++|++|+|.+-+|. ++|+.+|+||-.+|-..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~-------------------------------- 58 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ-------------------------------- 58 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence 4689999999999999999999998764 499999999999992211
Q ss_pred cccCCCCCeEEecCCCEEEecCh----HHHHHHhcCCcccccc-ccccc----ceeeEccCCceeecCCCHHH-HHhccC
Q 009226 100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLE-FKSID----ATFMLDADAKLCSVPDSRAA-IFKDKS 169 (539)
Q Consensus 100 ~~~~~~~~f~ldl~Gp~ll~~~~----~lv~~L~~s~~~~y~e-f~~v~----~~~~~~~~g~l~~vP~s~~~-vf~~~~ 169 (539)
+.|-++. ||.-+--.+ ...+++.++|.++-+. +..-. .+|++ +.|++..+|.+... +|. .
T Consensus 59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~--~ 128 (491)
T KOG1276|consen 59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF--S 128 (491)
T ss_pred ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc--c
Confidence 1222233 344432223 3667777788764332 22111 13444 48899999987654 222 1
Q ss_pred CChhhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcccCCcchhhhhccch
Q 009226 170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR 248 (539)
Q Consensus 170 ls~~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~-~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~ 248 (539)
+.+.-|..+..|+....+... ...-.|.++.+|.++ |+ +++-+.+..++.-+.|..|+ .++|.+
T Consensus 129 l~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk 193 (491)
T KOG1276|consen 129 LQPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMK 193 (491)
T ss_pred cCcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHH
Confidence 223344444444442211100 123456899999985 66 56666655554445566665 457777
Q ss_pred hHHHHHHHHHHhhh---------hccC--------------C--CccEEeecCCcChHHHHHHHHHHHCCcEEEeCCcce
Q 009226 249 DGINRLALYNSSIG---------RFQN--------------A--LGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI 303 (539)
Q Consensus 249 ~~l~~i~~~l~s~g---------~~g~--------------~--~ga~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~ 303 (539)
..+..+..--...| .++. . .-+.+-.+||...++++|++.....+..|.++-++.
T Consensus 194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~ 273 (491)
T KOG1276|consen 194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS 273 (491)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence 66655543222221 0100 0 001234578899999999999888888889999998
Q ss_pred EEEEecCCCcEEEEEeCCCc
Q 009226 304 SLLTDQNSGSYKGVRLASGQ 323 (539)
Q Consensus 304 ~I~~~~~~g~~~gV~l~~G~ 323 (539)
.+.....++...+.+..+++
T Consensus 274 ~~sk~~~~~~~~tl~~~~~~ 293 (491)
T KOG1276|consen 274 GNSKSRSGNWSLTLVDHSGT 293 (491)
T ss_pred cccccccCCceeEeEcCCCc
Confidence 88654323333344444554
No 34
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.55 E-value=4.9e-14 Score=148.82 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=88.7
Q ss_pred cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcccchhhhhhhhhc
Q 009226 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF 356 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~l 356 (539)
.|.+.+.+...+...|++|++|++|++|..+ ++++ .|.+.+|+++.||+||++ |...+.+ ..+.+++|......
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a 282 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA 282 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence 4444455556667788999999999999987 5554 677899999999999975 4333232 13445566533332
Q ss_pred ccCCCcceEEEEEEEecCCCCCCC-CceEEEeCCCCCCCCCCceEEEEEeCCCCccCCCCcEEEEEEE-eec---cccch
Q 009226 357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSA-LCD---EVNQG 431 (539)
Q Consensus 357 ~~~~~~~~vsr~i~I~~~~l~~~~-~~~~~~~p~~~~~~~~~~~v~v~~~ss~~~~cP~G~~vi~~st-~~~---~~~~~ 431 (539)
.+......+.+.++.++.++.+.. ....++.++. . ....++...+...+. +.+..+..... ... .....
T Consensus 283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~ 356 (450)
T PF01593_consen 283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDG-F----SPIGYVSDPSKFPGR-PGGGVLTSYVGGPDAPEWDDLSD 356 (450)
T ss_dssp HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESS-T----SSEEEEEEECCTTSC-TTSEEEEEEEEHHHHHHHTTSCH
T ss_pred ccccccCcceeEEEeeecccccccccccceecccC-c----cccccccccccCccc-ccCCcceeeeeccccchhcccch
Confidence 244455667777777888865443 2333333332 1 223444555544444 44433333322 111 12234
Q ss_pred HHHHHHHHHHHHhh
Q 009226 432 KKLLHAALSALQKL 445 (539)
Q Consensus 432 ~~~l~~~~~~l~~~ 445 (539)
++.++.+++.|-..
T Consensus 357 e~~~~~~~~~L~~~ 370 (450)
T PF01593_consen 357 EEILERVLDDLRKI 370 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhc
Confidence 55666666665543
No 35
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.45 E-value=9.5e-12 Score=123.33 Aligned_cols=292 Identities=16% Similarity=0.139 Sum_probs=156.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
..+|.|||+|++||+||..|++. ++|+++|++++.||+++|...+-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--------------------------------- 53 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--------------------------------- 53 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence 46899999999999999999875 78999999999999999975321
Q ss_pred cCCCCCeEEecCCCEEEecC---hHHHHHHhcCCcccccccccccceeeEccCCceeecC-CCHHHHHhcc--CCChhhH
Q 009226 102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP-DSRAAIFKDK--SLGLMEK 175 (539)
Q Consensus 102 ~~~~~~f~ldl~Gp~ll~~~---~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP-~s~~~vf~~~--~ls~~ek 175 (539)
....+.+|. | .+++.. -.+..++...|+.....|....- -++ +|.+..-- .....+|..+ .+.+
T Consensus 54 --d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~d-~gglEy~g~tgl~~L~aqk~n~l~p--- 123 (447)
T COG2907 54 --DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SLD-MGGLEYSGLTGLAGLLAQKRNLLRP--- 123 (447)
T ss_pred --cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Eec-CCceeeccCCCccchhhccccccch---
Confidence 001123343 1 222221 15677777777766544443211 112 23322111 1111233221 1122
Q ss_pred HHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHH--hcccCCcchhhhhccchhHHHH
Q 009226 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI--AMADYDQEVSEYVLKTRDGINR 253 (539)
Q Consensus 176 ~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~~~l~~~i--~l~~~~~~~~~~~~s~~~~l~~ 253 (539)
++.++++.+......... ..+ .....+.++.+||++.+.+...++-.++-+ +..+.+.. .++...+. .
T Consensus 124 -Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~----d~~~~pa~-~ 193 (447)
T COG2907 124 -RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLA----DASRYPAC-N 193 (447)
T ss_pred -hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHh----hhhhhhHH-H
Confidence 222222222221111000 011 123456899999999999887776555422 22221111 12222221 2
Q ss_pred HHHHHHhhhhccCCCcc-EEeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 254 LALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 254 i~~~l~s~g~~g~~~ga-~lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
+..|....|..--...+ +....||+..-.| ++++..+++|.++++|..|..-. +|. .|...+|++-+.|.||+
T Consensus 194 ~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vVi 267 (447)
T COG2907 194 FLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVVI 267 (447)
T ss_pred HHHHHhccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceeee
Confidence 22333333321111122 3345778888887 55678899999999999998753 553 34446799988899884
Q ss_pred --CCCCCCCCCCcccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCC
Q 009226 333 --DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD 379 (539)
Q Consensus 333 --~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~ 379 (539)
.|+..+ .++ .+ +-|++.+.+. . ....-.+++.-+|..+.|.
T Consensus 268 Ath~dqAl-~mL--~e-~sp~e~qll~-a-~~Ys~n~aVlhtd~~lmPr 310 (447)
T COG2907 268 ATHPDQAL-ALL--DE-PSPEERQLLG-A-LRYSANTAVLHTDASLMPR 310 (447)
T ss_pred ecChHHHH-Hhc--CC-CCHHHHHHHH-h-hhhhhceeEEeeccccccc
Confidence 465543 222 12 2244444331 1 1223455677778777653
No 36
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.29 E-value=2.9e-10 Score=117.69 Aligned_cols=206 Identities=14% Similarity=0.021 Sum_probs=115.8
Q ss_pred EeecCCcChHHHHHHHHHH----HCC--cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC-CCCC-CCc
Q 009226 272 IYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF-TVPG-SLA 343 (539)
Q Consensus 272 lyp~gG~geL~qal~r~~a----~~G--g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~-~~~~-l~~ 343 (539)
.+-.-|...+..-|.+... ++| +++++|++|.+|..+. ++. +.|++.||+.+.||+||++-+. .+.+ ...
T Consensus 216 ~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~-~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~ 293 (498)
T KOG0685|consen 216 IWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN-TGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHHK 293 (498)
T ss_pred eechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCC-CCc-EEEEEeCCcEEeccEEEEEeechhhhhhhhh
Confidence 3444555566655544221 233 5666779999998752 455 4788999999999999975331 1111 012
Q ss_pred ccchhhhhhhhhcccCCCcceEEEEEEEecCCCCCCCCceEEEeC-CCC---CCCCC---CceEEEEEeCCCCc--cC--
Q 009226 344 SSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFP-PRS---LFPEQ---VTSIRVLQLGGNLA--VC-- 412 (539)
Q Consensus 344 ~~~~~l~~~~~~l~~~~~~~~vsr~i~I~~~~l~~~~~~~~~~~p-~~~---~~~~~---~~~v~v~~~ss~~~--~c-- 412 (539)
-+.|+||..+..-..+...+.+-|..+=++.|+-|..-+.+..+. ... +.... -..+++.+..+... .|
T Consensus 294 lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gW 373 (498)
T KOG0685|consen 294 LFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGW 373 (498)
T ss_pred hcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhhee
Confidence 478899998876666777788888888899987655322222222 222 11100 11355555544320 00
Q ss_pred CCCcEEEEEEEeeccccchHHHHHHHHHHHHhhhhcCCCCCCCCccccccccCCc-ceEeEEeEEEEcCcceEEEEeeCc
Q 009226 413 PLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKP-TLLWSALYIQDLSLGYCIMVTKLP 491 (539)
Q Consensus 413 P~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~ilw~~~~~~~~~~~~~~~~~~~~ 491 (539)
=.|..--|+-+ -..+.+...+..+|..... |.+-++| +|+=+..++....-|.++...+-.
T Consensus 374 iaG~~~~~me~------lsdEev~e~~~~~lr~fl~------------n~~iP~p~kilRs~W~snp~frGSYSY~svgs 435 (498)
T KOG0685|consen 374 IAGREARHMET------LSDEEVLEGLTKLLRKFLK------------NPEIPKPKKILRSQWISNPFFRGSYSYRSVGS 435 (498)
T ss_pred ccCCcceehhh------CCHHHHHHHHHHHHHHhcC------------CCCCCCchhhhhhcccCCCccCceeeEeeccc
Confidence 00111111111 1233444444444432111 1123455 577777888888999999999988
Q ss_pred hHHHHh
Q 009226 492 CFQDVI 497 (539)
Q Consensus 492 ~~~~~~ 497 (539)
|-+|+=
T Consensus 436 ~~~d~~ 441 (498)
T KOG0685|consen 436 DGSDTG 441 (498)
T ss_pred cccccc
Confidence 877754
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.23 E-value=1e-10 Score=119.14 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=51.2
Q ss_pred Eeec-CCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 272 IYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 272 lyp~-gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
+||. .....|.+++.+.+++.|++++++++|.+|..+ + ....|.+.+|++++||.+|+
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence 6898 668999999999999999999999999999876 3 34678888898999999885
No 38
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.4e-10 Score=122.16 Aligned_cols=251 Identities=19% Similarity=0.175 Sum_probs=136.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccccC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
.|+|+|||++||+||..|+.+|++|+++|+++++||+++|+.... ++|. ++
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~~-E~--------------------------- 52 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNHV-EH--------------------------- 52 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCee-ee---------------------------
Confidence 599999999999999999999999999999999999999977532 1111 00
Q ss_pred CCCCeEEecCCCEEEe-cChHHHHHHhcCCcccccccccccceeeEc--cCCcee--ecCCC------HHHHHhccCCCh
Q 009226 104 HPRNFNLDVSGPRVLF-CADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL 172 (539)
Q Consensus 104 ~~~~f~ldl~Gp~ll~-~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~--~~g~l~--~vP~s------~~~vf~~~~ls~ 172 (539)
|=++++ +--.++.+|.+.+.+..+..++....++-. ..|.+- +.|.. ..+.++.+.+..
T Consensus 53 ----------glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~ 122 (485)
T COG3349 53 ----------GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR 122 (485)
T ss_pred ----------eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence 122221 222566666666665544444433322111 112111 11111 113334444444
Q ss_pred hhHHHHHHHHHHHHhhcccCccccccccccccccCCcHHHHHHhcCCChhHH-HHH-HHHHhcccCCcchhhhhccchhH
Q 009226 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIV-LYAIAMADYDQEVSEYVLKTRDG 250 (539)
Q Consensus 173 ~ek~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~efL~~~~l~~~l~-~~l-~~~i~l~~~~~~~~~~~~s~~~~ 250 (539)
.+|.. |+-.+...... ....+++..+.+|.|||++++...... +.+ ..+.++.-...+. .|++..
T Consensus 123 ~~~~~---~~~~l~~~~~g------~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~----~sa~~~ 189 (485)
T COG3349 123 REKIR---FVLRLGDAPIG------ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEG----CSARFF 189 (485)
T ss_pred HHHhH---Hhhccccccch------hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCccc----CcchhH
Confidence 44433 22111100000 012245667899999999877654332 221 1122222112232 445444
Q ss_pred HHHHHHHHHhhhhccCCCccEEeecCCcC-hHHHHHHHHHHHCCcEEEeCCcceEEEEecC--CCcEEEEEeCCCcEEEc
Q 009226 251 INRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILS 327 (539)
Q Consensus 251 l~~i~~~l~s~g~~g~~~ga~lyp~gG~g-eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~--~g~~~gV~l~~G~~i~A 327 (539)
+..+..++ +...+. +.....+++.. -+.+...+.+.+.|.+++++.+|+.|..+.. +.+++|+.+. +....+
T Consensus 190 lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~ 264 (485)
T COG3349 190 LTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ 264 (485)
T ss_pred HHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence 44333332 222221 11235567765 4457777778889999999999999987531 3446787765 554444
Q ss_pred CEEE
Q 009226 328 HKLV 331 (539)
Q Consensus 328 d~VI 331 (539)
...+
T Consensus 265 ~~~~ 268 (485)
T COG3349 265 QAAL 268 (485)
T ss_pred eehh
Confidence 4433
No 39
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.17 E-value=2e-10 Score=119.82 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=39.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+||+|||||++|+++|..|++.|++|+|+|+++++||.+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 799999999999999999999999999999999999987664
No 40
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.11 E-value=4.5e-10 Score=116.00 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=52.2
Q ss_pred EEeecCC---cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~lyp~gG---~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
+.+|.+| ...+.++|.+.+...|++++.+++|++|..+ ++++.+|++++|+ ++||+||..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence 5688888 6799999999999999999999999999988 7788889998887 999999964
No 41
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.09 E-value=8.6e-11 Score=92.05 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=38.8
Q ss_pred EECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhh
Q 009226 27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (539)
Q Consensus 27 IIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~ 68 (539)
|||+|++||++|.+|+++|++|+|+|+++++||+++++..++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g 42 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG 42 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC
Confidence 899999999999999999999999999999999999987644
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.02 E-value=9.5e-10 Score=116.11 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=48.3
Q ss_pred EEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
-+||.-. ..++.++|.+.+...|++++++++|++|..+ ++.+..|++++++++.||+||+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence 4689775 6799999999999999999999999999887 6677789877888999999995
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.95 E-value=1.6e-08 Score=106.25 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=50.6
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 009226 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD 333 (539)
Q Consensus 270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~-i~Ad~VI~~ 333 (539)
+.+.|.+|. +++..+|.+.+...|+.++||++|+.|.... +| ++.+.+.+|++ ++|+.||.+
T Consensus 141 al~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred eEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence 355677773 6899999999999999999999999999872 43 45667788887 999999964
No 44
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=7e-09 Score=102.43 Aligned_cols=101 Identities=20% Similarity=0.352 Sum_probs=69.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhhhhhhhccCCCCCCCCCCCccccccccccccccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
.||.+|||+|++|++.|..|++.|++|+|+||++++||++-+...+.. .+.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~t--------------------GIlv-------- 52 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQT--------------------GILV-------- 52 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCC--------------------CeEE--------
Confidence 389999999999999999999999999999999999999988544310 0111
Q ss_pred cCCCCCeEEecCCCEEEecChHHHHHHhcCCcccccccccccceeeEccCCceeecCCCHHH
Q 009226 102 SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAA 163 (539)
Q Consensus 102 ~~~~~~f~ldl~Gp~ll~~~~~lv~~L~~s~~~~y~ef~~v~~~~~~~~~g~l~~vP~s~~~ 163 (539)
.--||+++++.+.-|=-. +.++.||......-+-..+|.++.+|-+...
T Consensus 53 ---------HkYGpHIFHT~~~~Vwdy----v~~F~e~~~Y~hrVla~~ng~~~~lP~nl~t 101 (374)
T COG0562 53 ---------HKYGPHIFHTDNKRVWDY----VNQFTEFNPYQHRVLALVNGQLYPLPFNLNT 101 (374)
T ss_pred ---------eeccCceeecCchHHHHH----HhhhhhhhhhccceeEEECCeeeeccccHHH
Confidence 111799998877432211 1234555543332222238899999987643
No 45
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.91 E-value=9.5e-08 Score=103.27 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=45.6
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
++.|..|. ..+.++|.+.+...|++|+.+++|.+|.. ++ .+.|++.+| +++||+||+.
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~-~~~v~t~~g-~v~A~~VV~A 232 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQ-PAVVRTPDG-QVTADKVVLA 232 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CC-ceEEEeCCc-EEECCEEEEc
Confidence 55777774 47889999999999999999999999863 22 256776665 6999998853
No 46
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.88 E-value=3.1e-08 Score=104.75 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=47.1
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
+++|..|. ..+.++|.+.+...|++++++++|.+|..+ ++. +.|++.+| ++.||+||+.
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A 199 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC 199 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence 55677774 688999999999999999999999999765 444 46776655 7999999964
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.81 E-value=6.6e-08 Score=101.54 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=44.7
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
++.|.+|. ..+.++|.+.++..|++++.+++|++|..+ ++. +.|++++| ++.||+||+
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~ 194 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV 194 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence 44666663 478889999888999999999999999765 444 45776555 799998885
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.78 E-value=1.5e-07 Score=101.85 Aligned_cols=58 Identities=29% Similarity=0.362 Sum_probs=46.5
Q ss_pred ecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC--CC--cEEEcCEEEEC
Q 009226 274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD 333 (539)
Q Consensus 274 p~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~Ad~VI~~ 333 (539)
+.+|...+.++|.+.++..|++++++++|++|..+ ++++++|+.. +| ..++|+.||+.
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA 187 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA 187 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence 44555688999999999999999999999999876 6788888763 33 35899999853
No 49
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.77 E-value=3.5e-07 Score=101.00 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=42.7
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..+..+.++||||||+| +|++||+.++++|.+|+||||.+.+||.+..
T Consensus 9 ~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 9 GTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred CCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 44456678999999999 8999999999999999999999999997663
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.75 E-value=1.7e-07 Score=103.31 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=47.1
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 009226 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (539)
Q Consensus 270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~Ad~VI~ 332 (539)
++.+|. |. ..+..++++.+..+|++++.+++|++|..+ ++++++|++. +| .+|+|++||.
T Consensus 138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn 205 (546)
T PRK11101 138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN 205 (546)
T ss_pred EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence 466774 53 477888888889999999999999999876 6777788752 33 3689999995
No 51
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.74 E-value=2.5e-07 Score=101.08 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+|++||+.++++|.+|+||||.+..||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 47899999999999999999999999999999999999864
No 52
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.72 E-value=2.2e-07 Score=98.96 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.5
Q ss_pred CcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009226 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (539)
Q Consensus 277 G~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~ 332 (539)
+...+.+.|.+.++++|++|+++++|+++.++ +++++||... +|+ +|+|+.||+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence 34588999999999999999999999999998 7899999875 455 478999985
No 53
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.71 E-value=6.5e-07 Score=95.31 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=48.2
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
++.+|..|. ..+.++|.+.+...|++|+.+++|++|..+ ++++++|++. +.+++||+||+.
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~a 252 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVVA 252 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEEC
Confidence 356777664 377899999999999999999999999876 5666677764 557999999953
No 54
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.69 E-value=2.1e-07 Score=97.54 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=44.7
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
++.|..|. ..+.+++.+.+...|++++++++|++|..+ ++. +.|++++| +++||+||.
T Consensus 138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~ 198 (376)
T PRK11259 138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV 198 (376)
T ss_pred EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence 44566663 467778888888899999999999999875 443 46777666 799999884
No 55
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.65 E-value=9.6e-07 Score=93.81 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=46.2
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
++.|..|. ..+.++|++.+...|++++.+++|++|..+ +++++++|++.+| ++.|++||+.
T Consensus 172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVva 235 (407)
T TIGR01373 172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGVA 235 (407)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEEC
Confidence 44455554 366788888889999999999999999754 1466677887666 6999988754
No 56
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.64 E-value=8.2e-07 Score=96.27 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=47.3
Q ss_pred cEEeecCC-c---ChHHHHHHHHHHH----CC--cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 270 ALIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 270 a~lyp~gG-~---geL~qal~r~~a~----~G--g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
+.+.|..| . +.++++|.+.++. .| ++++++++|+.|..+ ++..+.|++.+| +++||.||+.
T Consensus 198 Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva 268 (497)
T PTZ00383 198 ALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS 268 (497)
T ss_pred EEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence 35567553 3 5889999999888 78 678999999999875 455677887666 6999999864
No 57
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.60 E-value=3e-08 Score=93.70 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.++||+|||+|.+||+||.+|+++|+||+++|++..+||....
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 4699999999999999999999999999999999999987543
No 58
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.59 E-value=3.5e-08 Score=92.79 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.+-||||||||.+||+||++||++|.||+++|++.++||-..
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 467999999999999999999999999999999999988543
No 59
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.55 E-value=1.9e-06 Score=86.00 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFT 337 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~ 337 (539)
.-..+|...++.+|+.++-|..|..+....+++..++|++++|..+.|+++|++ ..|+
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 344677788899999999999999998655567778999999999999999853 4444
No 60
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.54 E-value=1.1e-06 Score=99.45 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=47.3
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
+.+|..|. ..+.++|.+.+.. |++++.+++|++|..+ ++.+ .|++.+|+.+.|++||..
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~A 458 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVLA 458 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEEC
Confidence 56787774 4888999888888 9999999999999876 5544 477777777889999853
No 61
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.51 E-value=8.8e-07 Score=95.15 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=42.7
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
.+.+.++||+|||||++|+-+|+.+|.+|++|+++|++|.-.|-....
T Consensus 7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs 54 (532)
T COG0578 7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS 54 (532)
T ss_pred cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc
Confidence 455578999999999999999999999999999999999988865553
No 62
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.48 E-value=2.5e-07 Score=89.64 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=43.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccchhh
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~~~~ 68 (539)
.+++|||||++|++||..|+.+|++|+|+||..-+|||.+|-.+++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~ 47 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG 47 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence 3699999999999999999999999999999999999999987765
No 63
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.47 E-value=1.4e-07 Score=99.88 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=40.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||||++|++||+.|+++|.+|+++|+++.+|....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 5699999999999999999999999999999999999987766
No 64
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.47 E-value=3e-06 Score=95.08 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=36.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.++||||||+|.+||.||+.++++|.+|+|+||+..+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 4689999999999999999999999999999998888644
No 65
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.45 E-value=1.2e-05 Score=85.17 Aligned_cols=86 Identities=13% Similarity=0.162 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHhhhhccCCCccEEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCC--cEEEEEe-CC
Q 009226 246 KTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRL-AS 321 (539)
Q Consensus 246 s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g--~~~gV~l-~~ 321 (539)
|+.+.-..+.+|+.-+.++.. ..++.+.+|- .-.|..-|.+-.+..|+++++|+.|+.|..+.+++ .+.++.+ .+
T Consensus 174 Sa~E~rRyl~Rf~h~~~~l~~-l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~ 252 (500)
T PF06100_consen 174 SAVEFRRYLHRFIHEIPGLND-LSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQD 252 (500)
T ss_pred hHHHHHHHHHHHHHhcCCCCC-ccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcC
Confidence 455555556666655544332 1235567776 35899999999999999999999999998864333 2334443 44
Q ss_pred CcE--E---EcCEEEE
Q 009226 322 GQD--I---LSHKLVL 332 (539)
Q Consensus 322 G~~--i---~Ad~VI~ 332 (539)
|+. | .-|.|++
T Consensus 253 g~~~~i~l~~~DlV~v 268 (500)
T PF06100_consen 253 GKEETIDLGPDDLVFV 268 (500)
T ss_pred CCeeEEEeCCCCEEEE
Confidence 542 3 2566764
No 66
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.44 E-value=1.5e-05 Score=88.60 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=39.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.++||||||+|.+|++||..++++|++|++|||++..||.+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 3689999999999999999999999999999999999996653
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.40 E-value=2.9e-07 Score=91.33 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.++||+|||+|.+||+||++|++.|++|+++||++.+||..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46999999999999999999999999999999999998753
No 68
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.37 E-value=3.6e-07 Score=90.88 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=37.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.++||+|||+|++||+||.+|+++|++|+++|++..+||.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg 63 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGG 63 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Confidence 4689999999999999999999999999999999999874
No 69
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.37 E-value=4e-07 Score=97.47 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
..|||||||||++|++||+.|+++|++|+++||++.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999988764
No 70
>PRK10015 oxidoreductase; Provisional
Probab=98.34 E-value=4.8e-07 Score=96.87 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.+|||||||||++|++||+.|+++|.+|+++||++++|-.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 4699999999999999999999999999999999887643
No 71
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.29 E-value=8.1e-07 Score=94.50 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=39.1
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 13 ~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
|..|.-.+..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 445555556799999999999999999999999999999998754
No 72
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.28 E-value=7.5e-07 Score=96.30 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+..|||+|||||.+|+.||..|++.|++|+++|+++.+||.+..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 56799999999999999999999999999999999999998754
No 73
>PRK07121 hypothetical protein; Validated
Probab=98.28 E-value=1e-06 Score=96.12 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+|.+|++||+.++++|.+|+||||++..||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999998653
No 74
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.28 E-value=6.9e-07 Score=96.75 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
|++|||||||+|.+|+.||..+++.|++|+++|+++.+||.|..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 45699999999999999999999999999999998899998644
No 75
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.25 E-value=7.8e-07 Score=91.68 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
++||+|||||++||++|..|+|+|++|+|+|+++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 479999999999999999999999999999998654
No 76
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.25 E-value=1e-05 Score=85.94 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=48.7
Q ss_pred EeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCC
Q 009226 272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPG 340 (539)
Q Consensus 272 lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~-p~~~~~~ 340 (539)
.||..+ ..++.++|.+.++..|+++++++.|++|..+ ++ .+.|++ +++++.||.||+. .....|.
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVILATGGLSYPQ 163 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence 466554 5689999999999999999999999999654 33 356776 6778999999953 4333343
No 77
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.25 E-value=9e-07 Score=95.14 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~-~~GG~~~s 63 (539)
|++|||||||||.+|+.||..|++.|++|+++|+.+ .+||.+..
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 357999999999999999999999999999999987 48998754
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.24 E-value=1e-06 Score=94.90 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=40.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
...+|+|||||.+||+||.+|++.|.+|+++|+++.+||.|.-
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 3579999999999999999999999999999999999999865
No 79
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.24 E-value=8.8e-07 Score=94.82 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=34.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
||||||||++|++||+++||+|.+|+++|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998754
No 80
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.23 E-value=1.2e-06 Score=94.10 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=37.2
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
-+++....|||+|||||++|++||..|+++|++|+++|++.
T Consensus 32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45566678999999999999999999999999999999975
No 81
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.21 E-value=1.2e-06 Score=94.15 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=38.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC-CCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~-~GG~~~ 62 (539)
|.+|||||||+|.+|+.||..|++.|++|+++|+++. +||.+-
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 3579999999999999999999999999999999875 799653
No 82
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.21 E-value=1.7e-05 Score=85.12 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=48.6
Q ss_pred EeecCCcChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 009226 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL 332 (539)
Q Consensus 272 lyp~gG~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~-G~~i~Ad~VI~ 332 (539)
.++.+|...+.++|.+.++..|++|+++++|++|..+.+++++++|...+ +.+++|+.||+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 45666667899999999999999999999999998752246777877543 45799999985
No 83
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.4e-06 Score=93.44 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccccchhh
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD 68 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~~GG~~~s~~~~~ 68 (539)
.++.+||+|||||.+|+.+|.+|.++|.. +++|||++.+||.|+....++
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 34679999999999999999999999999 999999999999988866554
No 84
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.20 E-value=1.5e-06 Score=87.38 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
|||+|||||++||++|..|++.|.+|+|+|+++..+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999988765
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.19 E-value=1.6e-06 Score=94.83 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=38.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
+..|||||||||+.|+.+|..|++.|.+|+++||++..+|..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 456999999999999999999999999999999998877755
No 86
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=1.7e-06 Score=93.48 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
|.+|||||||+|.+|+.||..|++.|++|+++|+ +.+||.+..
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 4569999999999999999999999999999999 789997753
No 87
>PRK06116 glutathione reductase; Validated
Probab=98.16 E-value=1.7e-06 Score=93.27 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||+|.+|+.||..|++.|++|+++|++ .+||.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 4699999999999999999999999999999996 89997643
No 88
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2e-06 Score=93.30 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
+.+|||||||+|.+|+.||.+|++.|++|+++|+++.+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 3469999999999999999999999999999999999999764
No 89
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.16 E-value=2.1e-06 Score=90.60 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=35.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
+|..+||||||||++||++|..|+++|.+|+|+|+++..
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 456789999999999999999999999999999998765
No 90
>PRK08013 oxidoreductase; Provisional
Probab=98.14 E-value=2.2e-06 Score=90.92 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
|.++||+|||||++||++|+.|++.|++|+|+|+++..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 34689999999999999999999999999999998753
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.14 E-value=2.2e-06 Score=92.72 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+|||||||+|++|+.||..|++.|++|+++|+ +.+||.+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 48999999999999999999999999999999 889998764
No 92
>PTZ00058 glutathione reductase; Provisional
Probab=98.13 E-value=2.8e-06 Score=93.58 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=43.0
Q ss_pred CCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 11 PVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 11 ~~~~-~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
|+|. ++.-...+|||||||+|.+|..||..+++.|++|+++|++ .+||.|-.
T Consensus 36 ~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 36 SAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 4443 4443435799999999999999999999999999999996 79997754
No 93
>PRK06370 mercuric reductase; Validated
Probab=98.13 E-value=2.6e-06 Score=92.23 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=39.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+|.+|||||||+|.+|+.||.+|++.|++|+++|+. ..||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 466799999999999999999999999999999986 57776643
No 94
>PRK09126 hypothetical protein; Provisional
Probab=98.13 E-value=2.3e-06 Score=90.32 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=34.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.++||||||||++||++|..|+++|++|+|+||++..
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 3699999999999999999999999999999999875
No 95
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.13 E-value=2.6e-06 Score=93.09 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=38.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
++.+|||||||||+.|+.+|+.|++.|.+|++|||++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 35679999999999999999999999999999999987655443
No 96
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.10 E-value=2.8e-06 Score=93.12 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH 60 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~-~~~GG~ 60 (539)
+.+|||||||||++|+.||.++||.|++|+++|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45799999999999999999999999999999998 477763
No 97
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.10 E-value=2.6e-06 Score=91.75 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+|||||||+|.+|+.||.++++.|++|+++|+ +.+||.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 59999999999999999999999999999999 589998763
No 98
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.10 E-value=2.8e-06 Score=89.56 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
|+.+||+|||||++||++|++|++.|.+|+++|+++
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 345899999999999999999999999999999875
No 99
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.10 E-value=3.2e-06 Score=89.89 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=35.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
+||||||||+.|+++|..|++.|++|+||||++.+|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 599999999999999999999999999999998776444
No 100
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.10 E-value=2.8e-06 Score=91.53 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
++|||||||+|.+|+.||..|++.|++|+++|++ .+||.|.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 3699999999999999999999999999999995 6899764
No 101
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=2.8e-06 Score=91.93 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||||.+|+.||..|++.|++|+++|++. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46999999999999999999999999999999987 9997654
No 102
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.09 E-value=2.4e-06 Score=81.38 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=32.7
Q ss_pred EEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCCccc
Q 009226 26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS 63 (539)
Q Consensus 26 IIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~~GG~~~s 63 (539)
+|||||++||++|+.|.+.|.+ |++||+++.+||.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999999885
No 103
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=3.7e-06 Score=91.09 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=38.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+.+|||||||+|.+|+.||..|++.|++|+++|++ .+||.+..
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 34699999999999999999999999999999985 77887754
No 104
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.08 E-value=4.1e-06 Score=88.53 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
|||||||||++|+++|..|++.|++|+++|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 105
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.07 E-value=3.7e-06 Score=88.83 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
..+.++|.+.++..|++++.++.|+++..+ ++. +.|++++|+++.||.||.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIA 163 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEE
Confidence 467777888888889999999999999865 444 457778899999999994
No 106
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.07 E-value=3.3e-06 Score=89.66 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
+|..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 355789999999999999999999999999999996
No 107
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.07 E-value=9.8e-05 Score=77.89 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC--cEEEcCEEEE-CCCC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF 336 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~Ad~VI~-~p~~ 336 (539)
..+.++|.+.++..||+++.+..|.++..+ ++++++|.+.++ .+++||+||+ ...+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence 478899999999999999999999999876 677778876666 4799999885 4445
No 108
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.07 E-value=3.9e-06 Score=91.06 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4799999999999999999999999999999996 78998854
No 109
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.05 E-value=4.2e-06 Score=84.56 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
|||+|||||++|+.+|..|++.|++|+++|+++ .||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886543
No 110
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.04 E-value=3.4e-06 Score=85.50 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009226 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~~ 61 (539)
|||||||+|.+|+++|.+|+++| ++|+|||+.+++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 79999999999999999999998 6999999988776555
No 111
>PRK06184 hypothetical protein; Provisional
Probab=98.04 E-value=4.9e-06 Score=91.02 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
|+++||+|||||++||++|+.|++.|.+|+|+||++.+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 45799999999999999999999999999999999866
No 112
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.04 E-value=4.7e-06 Score=88.38 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
+||||||||++|++||..|+++|++|+++|++...+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~ 37 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAK 37 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 6999999999999999999999999999999865543
No 113
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.03 E-value=4.8e-06 Score=91.22 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+| +||+||+.++++|.+|+||||.+..||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 47899999999 99999999999999999999999999865
No 114
>PRK07045 putative monooxygenase; Reviewed
Probab=98.03 E-value=4.8e-06 Score=87.86 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=40.8
Q ss_pred hHHHHHHHHHH-HCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a-~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
.|-+.|.+.++ ..|+++++++.|+.|..+. ++.++.|++++|+++.||.||.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIg 159 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVG 159 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEE
Confidence 56666766664 4678999999999998762 5555678888999999999994
No 115
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.03 E-value=4.6e-06 Score=88.02 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=33.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
...+||+|||||++||++|+.|+++|++|+++|+++
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 456999999999999999999999999999999975
No 116
>PRK14694 putative mercuric reductase; Provisional
Probab=98.02 E-value=5.2e-06 Score=89.96 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=39.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+...|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 345799999999999999999999999999999986 69998754
No 117
>PLN02661 Putative thiazole synthesis
Probab=98.02 E-value=4.9e-06 Score=85.41 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS 59 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~GG 59 (539)
++||+|||+|++|+.||+.|+++ |++|+++|++..+||
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 58999999999999999999986 999999999999987
No 118
>PRK07236 hypothetical protein; Provisional
Probab=98.02 E-value=5.1e-06 Score=87.66 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
|..+||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5668999999999999999999999999999999864
No 119
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.02 E-value=5.1e-06 Score=89.27 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~Ad~VI~ 332 (539)
.++.+.|.+.+...|++++++++|++|..++ ++++++|++. +|+ .+.|+.||+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEE
Confidence 4788999999999999999999999998852 5778887653 343 368899884
No 120
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.02 E-value=4.7e-06 Score=87.48 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
..+.+.|.+.+...| ++++.++.|++|..+ ++. +.|++++|+++.||.||.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVG 157 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEE
Confidence 467778888777777 999999999999765 444 457778999999999884
No 121
>PLN02463 lycopene beta cyclase
Probab=98.02 E-value=6.7e-06 Score=88.23 Aligned_cols=45 Identities=31% Similarity=0.619 Sum_probs=38.4
Q ss_pred CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 11 ~~~~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.-|.+.+-....|||||||||++||++|+.|+++|++|+++|+++
T Consensus 17 ~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 17 ELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 334455555567999999999999999999999999999999976
No 122
>PRK13748 putative mercuric reductase; Provisional
Probab=98.02 E-value=4.9e-06 Score=92.27 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||||.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 5699999999999999999999999999999997 89998754
No 123
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.02 E-value=5.6e-06 Score=91.48 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--CCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~--~~GG~~~ 62 (539)
.++||||||+|.+||+||+.++++|.+|+||||.+ .+||...
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 8899654
No 124
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.01 E-value=5.4e-06 Score=87.65 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=34.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
...||+|||||++||++|..|+++|++|+|+||++..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 4579999999999999999999999999999998754
No 125
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.01 E-value=5.4e-06 Score=87.33 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
.+||+|||||++||++|+.|++.|.+|+|+|+++...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5899999999999999999999999999999988753
No 126
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.01 E-value=5.8e-06 Score=89.79 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEecc------CCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~------~~~~GG~~~s 63 (539)
.+|||||||+|.+|++||.+|++.|++|+++|+ +...||.|..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 469999999999999999999999999999998 4678998754
No 127
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.01 E-value=6.1e-06 Score=82.10 Aligned_cols=41 Identities=37% Similarity=0.499 Sum_probs=36.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC--CCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSH 60 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~--~GG~ 60 (539)
+.++||||||+|++||.||+.||.+|++|+++|+... +||.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 5679999999999999999999999999999998754 5664
No 128
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.01 E-value=5.3e-06 Score=88.37 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+...+|+|||||.+||++|+.|.+.|++|+++||.+.+||.|.--
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 446799999999999999999999999999999999999999874
No 129
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.00 E-value=5.6e-06 Score=87.29 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=34.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
||||||||++|+++|+.|++.|++|+++|+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999877763
No 130
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.00 E-value=7.8e-06 Score=94.65 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.+.+||+|||||.+|++||..|++.|++|+|+|+++.+||..+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 35689999999999999999999999999999999999998754
No 131
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.00 E-value=6.7e-06 Score=91.37 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..++||||||+|.+||+||+.++++|.+|+|+||.+..||....
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 35789999999999999999999999999999999999997643
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.98 E-value=5.9e-06 Score=87.71 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (539)
..+-++|.+.++..|.+++.++.|+++..+ ++. +.|++++|+++.||.|| ++.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG 165 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG 165 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 356677777777789999999999999765 333 45777899999999999 443
No 133
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.98 E-value=6e-06 Score=85.92 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=41.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~ 65 (539)
.-+++|||||++|++||..|++.|++|.++|+++.+||+.+.++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 46899999999999999999999999999999999999987765
No 134
>PRK12831 putative oxidoreductase; Provisional
Probab=97.97 E-value=9.2e-06 Score=87.87 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
+...+..||+|||+|.+||+||..|++.|++|+++|+++.+||.+.
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 3445678999999999999999999999999999999999999874
No 135
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.97 E-value=7.2e-06 Score=90.70 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..|||||||||.+||+||..|++.|++|+++|++ .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 3599999999999999999999999999999996 68987653
No 136
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.97 E-value=8e-06 Score=85.83 Aligned_cols=60 Identities=32% Similarity=0.360 Sum_probs=46.4
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 270 ALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 270 a~lyp~gG~---geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
++.+|..|. ..+.+++++.+...| ..+..+++|..+..+ . +.++|.+.+|. +.|++||+.
T Consensus 144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a 207 (387)
T COG0665 144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA 207 (387)
T ss_pred eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence 356777774 478899999999999 556668999998754 3 66788877776 999999964
No 137
>PLN02985 squalene monooxygenase
Probab=97.97 E-value=9.3e-06 Score=88.82 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=35.9
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
......+||||||||++|+++|.+|+++|++|+++||...
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 3455678999999999999999999999999999999754
No 138
>PRK06834 hypothetical protein; Provisional
Probab=97.97 E-value=8e-06 Score=88.91 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=35.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
|+.+||||||||++|+++|+.|++.|.+|+|+|+++.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5679999999999999999999999999999999875
No 139
>PRK06185 hypothetical protein; Provisional
Probab=97.96 E-value=7.4e-06 Score=86.96 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
+.++||+|||||++|+++|+.|+++|.+|+++|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3569999999999999999999999999999999863
No 140
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.96 E-value=7.6e-06 Score=88.56 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=36.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
|||||||+|.+|+.||.+|++.|++|+++|++. +||.|-.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 799999999999999999999999999999976 7887643
No 141
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.96 E-value=7.4e-06 Score=83.03 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
.....||||||||.+|++.|++|+|.|++|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 345799999999999999999999999999999985
No 142
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.95 E-value=7.3e-06 Score=86.51 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=33.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC---CCeEEEeccC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN 54 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~---G~~VlvlE~~ 54 (539)
|..+||+|||||++||++|+.|+|+ |.+|+|+|++
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4679999999999999999999998 9999999996
No 143
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.95 E-value=9.3e-06 Score=84.87 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
+||+|||+|+.|+++|+.|++.|++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999875
No 144
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=9.6e-06 Score=90.30 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
+++...++||||||+|.+||.||+.++++|.+|+||||+...||..
T Consensus 6 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred cCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 4566778999999999999999999999999999999998777643
No 145
>PRK14727 putative mercuric reductase; Provisional
Probab=97.94 E-value=9.4e-06 Score=88.25 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=41.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+.+..|||||||+|.+|+.+|..|++.|++|+++|+++.+||.|..
T Consensus 12 ~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 12 RSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 3445699999999999999999999999999999999999998865
No 146
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00013 Score=78.96 Aligned_cols=58 Identities=31% Similarity=0.423 Sum_probs=48.6
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI 331 (539)
...|.-|. ..+.|+++++|...|+.|.-+++|++|.+. +++..+|.+.-| .|+|.+||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G-~iet~~~V 236 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG-SIETECVV 236 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc-ceecceEE
Confidence 45677773 588999999999999999999999999987 555679997666 48899988
No 147
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.93 E-value=8e-06 Score=86.40 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999874
No 148
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.93 E-value=9.6e-06 Score=89.71 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+|++||..|+++|.+|+|||+++.+||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 47899999999999999999999999999999999999964
No 149
>PLN02697 lycopene epsilon cyclase
Probab=97.93 E-value=1.3e-05 Score=87.62 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=34.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
....+||||||||++||++|.+|++.|.+|+++|+....
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~ 143 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF 143 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence 345699999999999999999999999999999986443
No 150
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.91 E-value=8.9e-06 Score=85.48 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009226 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 279 geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~p 334 (539)
.++.+.|.+.+.. .|+++++++.|++|..+ ++. +.|++++|+++.||.|| ++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence 4677888887777 49999999999999765 333 46777888899999998 444
No 151
>PRK06847 hypothetical protein; Provisional
Probab=97.91 E-value=1.3e-05 Score=84.10 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
.++.+.|.+.+...|+++++++.|++|..+ ++. +.|.+.+|+++.||.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence 366777777777789999999999999765 333 467778999999999995
No 152
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.90 E-value=1.5e-05 Score=91.98 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=41.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..+..+|+|||+|.+|++||..|++.|++|+++|+++.+||..+.
T Consensus 536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 346679999999999999999999999999999999999998754
No 153
>PRK07190 hypothetical protein; Provisional
Probab=97.90 E-value=1.1e-05 Score=87.68 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=35.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
+..+||+|||||++||++|+.|++.|.+|+++||++.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 34689999999999999999999999999999999875
No 154
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.90 E-value=8.8e-05 Score=79.97 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEE-EC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LD 333 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI-~~ 333 (539)
+.+-+-|.+.+...|++++.++ |..+..+. +|.+.+|++++|++++||.|| ++
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECC
Confidence 4677888888899999998875 88887764 788889999999999999999 54
No 155
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.2e-05 Score=81.84 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~~ 65 (539)
+..+||||||+|++||+||.+++|+|.++.+++.....||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 3579999999999999999999999999555555677787665544
No 156
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.89 E-value=1.2e-05 Score=89.91 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=36.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
...|||||||||+.|+.+|+.|++.|.+|+++|+++.-+|
T Consensus 69 ~~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 69 AEPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 3459999999999999999999999999999999987666
No 157
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.88 E-value=1.2e-05 Score=89.44 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.++||||||+|.+||+||+.++++|.+|+||||.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3689999999999999999999999999999999999885
No 158
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.88 E-value=1.1e-05 Score=84.82 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+||+|||||++|+++|..|++.|++|+|+|+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 159
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.88 E-value=1.2e-05 Score=87.87 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
++.+.+.+..+..|.++++++.|++|... ++. ..|++.+|+++.+|.||+.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~a 273 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLYA 273 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEEe
Confidence 56778888888899999999999998754 333 4566778999999999854
No 160
>PTZ00367 squalene epoxidase; Provisional
Probab=97.88 E-value=1.3e-05 Score=88.45 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
...++||||||||++|+++|.+|+++|++|+|+|++.
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3357999999999999999999999999999999975
No 161
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.88 E-value=1.2e-05 Score=85.08 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=44.0
Q ss_pred CcChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 009226 277 GQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP 334 (539)
Q Consensus 277 G~geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI-~~p 334 (539)
....|-++|.+++...+ .+++.++.|+.+..+ ++.+. |+++ +|++++||.|| ++.
T Consensus 102 ~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 102 PRSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCC
Confidence 35678888888887777 799999999999886 44444 7777 99999999999 444
No 162
>PRK06753 hypothetical protein; Provisional
Probab=97.88 E-value=1.2e-05 Score=84.33 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 38999999999999999999999999999999865
No 163
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.87 E-value=1.4e-05 Score=85.56 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=41.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+.+||+||||+|.+|..||.++++.|++|+++|+...+||-|-.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 467999999999999999999999999999999999999988664
No 164
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.4e-05 Score=88.87 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=36.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
...||||||+|++||.||+.++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4569999999999999999999999999999999987764
No 165
>PRK06126 hypothetical protein; Provisional
Probab=97.86 E-value=1.5e-05 Score=88.09 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.+..+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 34568999999999999999999999999999999864
No 166
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.86 E-value=1.6e-05 Score=92.69 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
++..+|+|||+|++||+||..|++.|++|+|+|+++.+||..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 3467999999999999999999999999999999999999865
No 167
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.85 E-value=1.9e-05 Score=89.22 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=40.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
++..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 45679999999999999999999999999999999999997653
No 168
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=1.6e-05 Score=88.36 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=38.9
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
|...++||||||+|.+||.||+.++++|.+|+++||....||.
T Consensus 3 ~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 3 LPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred CCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4456789999999999999999999999999999999887774
No 169
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.85 E-value=1.4e-05 Score=84.66 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999874
No 170
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.85 E-value=1.4e-05 Score=85.94 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar----~G~~VlvlE~~~~ 56 (539)
|||+|||||++||++|+.|++ .|.+|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999653
No 171
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=1.6e-05 Score=89.00 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
..++||||||+|++||.||+.++++|.+|+++||+...||
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 3468999999999999999999999999999999987665
No 172
>PLN02507 glutathione reductase
Probab=97.84 E-value=1.6e-05 Score=86.73 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p 334 (539)
.++.+.+.+..+..|.++++++.|+++..+ ++. +.|.+.+|+++.+|.||+..
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a~ 296 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFAT 296 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEee
Confidence 467777777788899999999999999754 333 35667788899999999643
No 173
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=1.7e-05 Score=88.50 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.+...++||||||+|++||.||+.+++.|.+|+|+||....||.
T Consensus 7 ~~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 7 KIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 34446799999999999999999999999999999998776664
No 174
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.84 E-value=2.2e-05 Score=86.89 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC--CCCccccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~--GG~~~s~~ 65 (539)
..+||+|||||++||++|+.|++.|.+|+|+||++.. +++...+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~ 68 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA 68 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence 5689999999999999999999999999999999866 44444444
No 175
>PRK08244 hypothetical protein; Provisional
Probab=97.83 E-value=1.6e-05 Score=86.78 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=33.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
++||+|||||++||++|+.|++.|.+|+|+||++..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999999999998753
No 176
>PRK07538 hypothetical protein; Provisional
Probab=97.83 E-value=1.6e-05 Score=84.73 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998654
No 177
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.83 E-value=2.1e-05 Score=87.13 Aligned_cols=42 Identities=26% Similarity=0.552 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+|.+|++||+.++++|.+|++|||++..||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 478999999999999999999999999999999999988543
No 178
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.83 E-value=1.8e-05 Score=83.07 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCC
Q 009226 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH 60 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~ 60 (539)
||||||||++||++|.+|+++ |++|+++|+++..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999988 9999999999988764
No 179
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.82 E-value=1.6e-05 Score=84.28 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
..+.+.|.+.+...|++++.+++|+++..+ ++. +.|++++|+++.||.||.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA 161 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence 477788888888889999999999999765 443 467778899999999994
No 180
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.82 E-value=2.2e-05 Score=86.56 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.++||||||+|.+||.||+.+++.|.+|+++||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999987774
No 181
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.82 E-value=2.4e-05 Score=84.37 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.++.+||+|||+|.+||++|..|++.|++|+++|+++.+||...
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 44678999999999999999999999999999999999999753
No 182
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.82 E-value=2e-05 Score=86.99 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
+..+||+|||+|++||++|..|++.|.+|+|+|+++..+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~ 48 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL 48 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC
Confidence 56689999999999999999999999999999999876543
No 183
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.82 E-value=2.4e-05 Score=87.98 Aligned_cols=47 Identities=21% Similarity=0.293 Sum_probs=42.2
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 16 ~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
+.+.++..+|+|||+|.+||++|..|++.|++|+++|+++.+||.++
T Consensus 304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 34445678999999999999999999999999999999999999865
No 184
>PRK11445 putative oxidoreductase; Provisional
Probab=97.82 E-value=1.7e-05 Score=82.71 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.|||+|||||++||++|..|+++ ++|+++|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 38999999999999999999999 999999999754
No 185
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.81 E-value=2.1e-05 Score=87.27 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~ 332 (539)
..|.++|.+.+...|.+++.++.++++.++ +|+++||... +|+ .++|+.||+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVL 192 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTKAVVL 192 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeCeEEE
Confidence 368888888887889999999999999987 7899998753 333 578999985
No 186
>PRK12839 hypothetical protein; Provisional
Probab=97.81 E-value=2.3e-05 Score=86.90 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=40.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.++||||||+|.+|++||+.|+++|.+|+++|++...||.+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 4789999999999999999999999999999999999997653
No 187
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.79 E-value=1.8e-05 Score=85.89 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.9
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCC--cEEEcCEEEEC
Q 009226 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD 333 (539)
Q Consensus 270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G--~~i~Ad~VI~~ 333 (539)
+.+.|..|. ..+.++|.+.++..|++++++++|++|..+. ++. +.|++ .+| .+++|++||+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence 455777773 6899999999999999999999999998752 333 33432 234 36899999854
No 188
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.79 E-value=3e-05 Score=83.77 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=41.4
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar--~G~~VlvlE~~~~~GG~~~s 63 (539)
+......+|+|||+|.+|+.||..|++ .|++|+++|+.+.+||..+.
T Consensus 21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 21 SSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 334456789999999999999999987 79999999999999998875
No 189
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.79 E-value=2.3e-05 Score=87.62 Aligned_cols=59 Identities=15% Similarity=0.301 Sum_probs=45.4
Q ss_pred eecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 273 yp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
++..+. ..|.++|.+.+...|.+++.++.|.++..++ +|++.||.. .+|+ .+.|+.||+
T Consensus 159 ~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVL 223 (617)
T PTZ00139 159 AAADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAHYTVI 223 (617)
T ss_pred ecCCCcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECCcEEE
Confidence 343334 3788999998888999999999999998742 788888864 3564 578999984
No 190
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.79 E-value=2.5e-05 Score=80.41 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=36.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+-+|||||||++||++|++|+|.|++|+|+|++.-+=|.-.++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si 44 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSI 44 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcce
Confidence 3589999999999999999999999999999987664443333
No 191
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.77 E-value=2.3e-05 Score=85.13 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
.++.+.+.+..+..|.++++++.|++|..+ ++....|++.+|+++.+|.||+.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~a 283 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMMA 283 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEEe
Confidence 477888888888999999999999999764 23334566778889999999853
No 192
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.77 E-value=3e-05 Score=86.31 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=40.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.+.++||||||+|.+|++||..++++|++|++|||++..||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 345799999999999999999999999999999999999997654
No 193
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.77 E-value=2.2e-05 Score=85.37 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=37.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~~ 62 (539)
+..+||||||||+.|+++|+.|++. |++|+||||++.+|+..+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 4568999999999999999999984 899999999988776553
No 194
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.77 E-value=2.7e-05 Score=91.70 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=40.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..+||+|||||++||+||.+|++.|++|+++|+++.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999997754
No 195
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.77 E-value=2.4e-05 Score=82.25 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.7
Q ss_pred cEEEECCChhHHHHHHHH--hhCCCeEEEeccCCCC
Q 009226 24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~L--ar~G~~VlvlE~~~~~ 57 (539)
||||||||++||++|.+| ++.|++|+++|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999999887
No 196
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.77 E-value=2.6e-05 Score=91.54 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=39.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.+..||+|||+|++||+||..|++.|++|+|+|+.+.+||..+
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 4567999999999999999999999999999999999999765
No 197
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.77 E-value=2.4e-05 Score=86.38 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=37.0
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
+-..++||||||+|++||.||+.++ .|.+|+++||.+..||.
T Consensus 5 ~~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 5 ILPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 3445789999999999999999986 59999999999988874
No 198
>PRK07588 hypothetical protein; Provisional
Probab=97.77 E-value=2.3e-05 Score=82.78 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.||+|||||++||++|..|++.|.+|+++|+++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3899999999999999999999999999999864
No 199
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.76 E-value=3.2e-05 Score=83.91 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
...+||+|||+|.+|+++|..|++.|++|+++|+++++||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3557999999999999999999999999999999999999754
No 200
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.76 E-value=2.5e-05 Score=83.81 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=43.4
Q ss_pred eecCCcC-hHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEe-CCCc--EEEcCEEEE
Q 009226 273 YPIYGQG-ELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLVL 332 (539)
Q Consensus 273 yp~gG~g-eL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l-~~G~--~i~Ad~VI~ 332 (539)
++....+ ++.++|.+.++. .|.+|+++++|..|..+ +++++||.. .+|+ ++.|+.||+
T Consensus 121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 4444443 688888877765 59999999999999876 677888653 3554 589999985
No 201
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.76 E-value=3.2e-05 Score=88.68 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.+..||+|||+|++||+||..|++.|++|+|+|+++.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3567999999999999999999999999999999999999865
No 202
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.74 E-value=2.8e-05 Score=87.12 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|++||.||+.++++|.+|+++||....||..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 35899999999999999999999999999999998877743
No 203
>PLN02546 glutathione reductase
Probab=97.74 E-value=2.9e-05 Score=85.59 Aligned_cols=44 Identities=27% Similarity=0.168 Sum_probs=38.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC---------CCCCCCccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~---------~~~GG~~~s 63 (539)
..+|||||||+|.+|..||..+++.|++|+++|++ ..+||-|-.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 34699999999999999999999999999999973 568887655
No 204
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.74 E-value=3.1e-05 Score=85.03 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
...|||+|||||++|++||.+|++.|++|+++|++ +||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 34699999999999999999999999999999874 999875
No 205
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.73 E-value=2.7e-05 Score=85.33 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=35.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..|+|||||.+||++|..|.+.|.+|+++||++.+||.|+-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 36999999999999999999999999999999999999974
No 206
>PRK02106 choline dehydrogenase; Validated
Probab=97.73 E-value=3.2e-05 Score=85.82 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=34.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~ 56 (539)
..+||+||||+|.+|+++|.+|++ +|++|+|||+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 356999999999999999999999 8999999999854
No 207
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.71 E-value=0.00085 Score=70.62 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=46.6
Q ss_pred EeecCCc----ChHHHHHHHHHHHC-CcEEEeCCcceEEEEecCCCcEEEEEe---C--CCcEEEcCEEEECC
Q 009226 272 IYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRL---A--SGQDILSHKLVLDP 334 (539)
Q Consensus 272 lyp~gG~----geL~qal~r~~a~~-Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~--~G~~i~Ad~VI~~p 334 (539)
.+...|+ |+|.+.|.+.+... |..+++++.|+.|.+.. +|+ |.|++ . +.++++|+.|++++
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvGA 240 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVGA 240 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEECC
Confidence 4666775 79999999988877 99999999999999863 453 45543 2 23578999999753
No 208
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.71 E-value=3e-05 Score=86.22 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=45.8
Q ss_pred EeecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 272 lyp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
.++..++ ..|.++|.+.+...|.+++.++.|.++.++ +|++.||.. .+|+ .+.|+.||+
T Consensus 127 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl 191 (575)
T PRK05945 127 CYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF 191 (575)
T ss_pred EecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence 3454443 478899999888899999999999999876 778877753 4564 578999995
No 209
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.70 E-value=3.5e-05 Score=81.16 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
.||+|||||++|+.||+.|++.|++|+++|+++..+-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 5999999999999999999999999999999876644
No 210
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.70 E-value=3.5e-05 Score=85.56 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
.+.++|.+.+...|.+++.++.|++|..+ +|+++||.. .+|+ .+.|+.||+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 185 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL 185 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence 68888888888889999999999999887 788888764 3565 578999985
No 211
>PRK05868 hypothetical protein; Validated
Probab=97.69 E-value=3.8e-05 Score=80.68 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999998764
No 212
>PLN02815 L-aspartate oxidase
Probab=97.69 E-value=3.6e-05 Score=85.54 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
++||||||+|++||.||+.+++.| +|+++||....||.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 589999999999999999999999 89999999998884
No 213
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.68 E-value=4.1e-05 Score=83.67 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=37.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
|||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999999865
No 214
>PRK10262 thioredoxin reductase; Provisional
Probab=97.68 E-value=4e-05 Score=78.79 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=37.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..+||+|||+|.+||.||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67887544
No 215
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.68 E-value=4.5e-05 Score=85.41 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~-~~~GG~~~s 63 (539)
.+|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 3799999999999999999999999999999984 579997654
No 216
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.67 E-value=4.4e-05 Score=84.96 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G---~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+||.||+.++++| .+|+++||....||..
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 4689999999999999999999998 8999999999877743
No 217
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.67 E-value=6.4e-05 Score=81.23 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
....+|+|||+|.+|+.+|..|++.|++|+++|+++++||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3457999999999999999999999999999999999998753
No 218
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.66 E-value=6e-05 Score=81.65 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
++..+|+|||+|.+|+++|..|++.|++|+++|+++.+||..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3568999999999999999999999999999999999999764
No 219
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.66 E-value=4.3e-05 Score=86.03 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
..|..+|.+.+...|+.++.++.|.+|..+ +|+++||.. .+|+ .+.|+.||+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL 214 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI 214 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 478888888888899999999999999987 788888765 3565 367999885
No 220
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.66 E-value=4.1e-05 Score=81.02 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=35.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
||+|||||++|+.+|.+|++.|++|+++|+++..|-..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~ 39 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA 39 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence 79999999999999999999999999999998876543
No 221
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.66 E-value=4.1e-05 Score=85.95 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=38.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCC--CCCccccc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSLS 65 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar-~G~~VlvlE~~~~~--GG~~~s~~ 65 (539)
+.++||+|||||++||++|+.|++ .|.+|+|+|+++.. .|++..+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~ 78 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIA 78 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEC
Confidence 567999999999999999999999 59999999998643 45554433
No 222
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.66 E-value=4.7e-05 Score=80.80 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
-+|+|||||++||++|.+|++.|++|+|+|+++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999998754
No 223
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.64 E-value=4.8e-05 Score=82.90 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEEeCC-C--cEEEcCEEEE
Q 009226 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~Ad~VI~ 332 (539)
..|.++|.+.+.. .|.+++.++.|++|..+ ++++++|...+ + ..++|+.||+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl 183 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL 183 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence 4788999888877 68999999999999876 67788876543 3 3688999985
No 224
>PRK06996 hypothetical protein; Provisional
Probab=97.64 E-value=5e-05 Score=80.51 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=35.0
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCCC
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF 56 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G----~~VlvlE~~~~ 56 (539)
+..+..+||+|||||++|+++|+.|++.| ++|+++|+.+.
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 35556799999999999999999999997 47999999764
No 225
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.64 E-value=5.5e-05 Score=82.99 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
...|||+|||||.+|++||.+|++.|++|+++|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4569999999999999999999999999999985 6899765
No 226
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.63 E-value=6.1e-05 Score=90.08 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
...+||||||+|.+|++||+.++++|.+|++|||.+..||...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 3469999999999999999999999999999999999999753
No 227
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.63 E-value=5.5e-05 Score=80.63 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCC
Q 009226 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSH 60 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~ 60 (539)
+|+|||||++||++|..|+++| .+|+|+||++.++..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~ 39 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEV 39 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCC
Confidence 6999999999999999999998 599999999876543
No 228
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.61 E-value=5.6e-05 Score=84.47 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG 59 (539)
.++||||||+|.+||.||+.++++ |.+|+++||++..|+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 468999999999999999999998 999999999987544
No 229
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.61 E-value=5.7e-05 Score=82.73 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+||.||..+++ |.+|+++||.+..||..
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 36899999999999999999976 99999999999888753
No 230
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.61 E-value=5.5e-05 Score=84.34 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
....+|+|||||++||++|.+|++.|.+|+|+||++
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 356899999999999999999999999999999975
No 231
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.61 E-value=6e-05 Score=84.98 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
+..+|+|||+|.+||++|..|++.|++|+++|+++++||...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999864
No 232
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.60 E-value=6.1e-05 Score=81.67 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~~ 62 (539)
..+||||||||+.|+++|+.|++. |++|+|+||.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 457999999999999999999999 999999999777766544
No 233
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.60 E-value=4.6e-05 Score=79.48 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 281 L~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
+.+.+.+.++..+..-.....|+.|..+ +++++||++.+|+.+.||.||+.
T Consensus 97 y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVla 147 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLA 147 (392)
T ss_dssp HHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-
T ss_pred HHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEe
Confidence 3444445555656666678899999887 78999999999999999998853
No 234
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.55 E-value=8.1e-05 Score=80.98 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=37.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--------CCCCCccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS 63 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~--------~~GG~~~s 63 (539)
+|||||||+|.+|+.||..+++.|++|+++|+.. .+||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999999999742 57887644
No 235
>PRK08275 putative oxidoreductase; Provisional
Probab=97.54 E-value=7.8e-05 Score=82.53 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
.++.+.|.+.+...|.+++.++.|.+|..++ +|++.||.. .+|+ .+.|+.||+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 4788999998888999999999999998752 577888763 3565 478999885
No 236
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.54 E-value=7.6e-05 Score=82.47 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
.++.+.|.+.+...|.++++++.|+++.++. +++++||.. .+|+ .++|+.||+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIl 191 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATIL 191 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence 4788888888888999999999999998872 344888753 4564 488999995
No 237
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.53 E-value=7.6e-05 Score=74.51 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcE--EEcCEEEE-CCCCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLVL-DPSFT 337 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~--i~Ad~VI~-~p~~~ 337 (539)
.+-+.|-+.....||.++-+-+|.+.... +|++..|.+.++.. ++||.+|. +.++.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccc
Confidence 57788999999999999999999999887 88888888888765 57887774 55554
No 238
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.52 E-value=8.7e-05 Score=82.57 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=36.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+||.||+.++++| .+|+++||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 3589999999999999999999874 7999999998887743
No 239
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.51 E-value=0.00013 Score=79.36 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
...+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 346999999999999999999999999999999999998764
No 240
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.51 E-value=0.0001 Score=80.98 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=41.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+...++||||||+|.+||.||..++.+|.+|+++||....||+...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 3456799999999999999999999999999999999998866544
No 241
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.51 E-value=9.9e-05 Score=78.52 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~--~i~Ad~VI~ 332 (539)
++.++|.+.++..|+++++++.|.++..+ ++++..|...+|+ .++||.||+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL 312 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL 312 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence 78999999999999999999999999876 5666666555554 489999885
No 242
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.50 E-value=8.8e-05 Score=74.25 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCC---------CCCccccchh
Q 009226 21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFY---------GSHFSSLSIA 67 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar----~G~~VlvlE~~~~~---------GG~~~s~~~~ 67 (539)
.+.||+|||+|..|++.|..|.+ .|.+|+|+|+++.| ||.+..|+++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp 144 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP 144 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence 47899999999999999999854 37999999999986 5555555544
No 243
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.50 E-value=0.0001 Score=79.87 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
..+.++|.+.+...|.+++.+ .|+.+..+ ++++++|.. +|+.+.|+.||+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL 169 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI 169 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence 478999999998899999876 78888765 678888875 677899999985
No 244
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.48 E-value=0.00011 Score=81.00 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
+.++||||||+|.+||.||+.+++. .+|+++||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3468999999999999999999986 899999999988874
No 245
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.47 E-value=0.0001 Score=81.89 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=36.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~ 61 (539)
++||||||+|++||.||..++++ |.+|+++||....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 57999999999999999999987 57999999999888744
No 246
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.47 E-value=0.00012 Score=81.50 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCC---CcEEEEEe---CCCc--EEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~---g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
..|.++|.+.+...|.+++.++.|.+|..++ + |++.||.. .+|+ .++|+.||+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 200 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVF 200 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence 4788999988888999999999999998762 2 78888864 3565 478999985
No 247
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00013 Score=82.37 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=44.2
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
-|+...+-+.|.|||+|.+||+||..|-|+|+.|+|+||.|++||...-
T Consensus 1778 ~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1778 CPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred CCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 4555667789999999999999999999999999999999999998764
No 248
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.44 E-value=0.00014 Score=68.86 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
||||||||.+|+.||..|++.|.+|+++|+++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987654
No 249
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.42 E-value=0.00012 Score=74.98 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=44.7
Q ss_pred CcccEEEECCChhHHHHHHHHhh----C--CCeEEEeccCCCCCCCccccc------hhhh-hhhhccCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS------IADL-THFLNSHS 77 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar----~--G~~VlvlE~~~~~GG~~~s~~------~~~~-~~~~~~~~ 77 (539)
+++||+|||||.+||+||.+|.+ + -.+|.|+|+...+||+.-|-. ++++ ++|..+..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~a 144 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGA 144 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCC
Confidence 46999999999999999998854 2 458999999999999987743 3333 56766543
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.40 E-value=0.00016 Score=78.29 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=35.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
+|||||+|.+|++||.+|++.|++|+++|+++ +||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence 79999999999999999999999999999975 7776653
No 251
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00014 Score=80.01 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=33.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
..++|+||||+|.+|.++|..|+++|++|++||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 45799999999999999999999999999999985
No 252
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.37 E-value=0.00022 Score=76.49 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=41.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..+...|.|||+|.+||++|..|+++|+.|+++|+.+..||+...
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 445578999999999999999999999999999999999999876
No 253
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.35 E-value=0.00023 Score=74.15 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
..+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 35899999999999999999999999999999999999764
No 254
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.34 E-value=0.00033 Score=56.42 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=33.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
|+|||+|..|+-+|..|++.|++|+++|+++++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 8999999999999999999999999999999987
No 255
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.33 E-value=0.00029 Score=80.77 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=38.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.++...|+|||+|.+||+||..|++.|++|+++|+.+..|+..
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~ 422 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPF 422 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccccc
Confidence 3467899999999999999999999999999999988877653
No 256
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.32 E-value=0.00028 Score=78.39 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
...+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 446899999999999999999999999999999999999764
No 257
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.29 E-value=0.00027 Score=77.72 Aligned_cols=38 Identities=34% Similarity=0.330 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
|||||||+|++|+.||.++++.|++|+++|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 79999999999999999999999999999998554443
No 258
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.28 E-value=0.00027 Score=78.82 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHh----hCCCeEEEeccCCCC
Q 009226 24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~La----r~G~~VlvlE~~~~~ 57 (539)
||||||+|.+||.||+.++ ++|.+|+++||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999998863
No 259
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.26 E-value=0.00023 Score=78.06 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHC-CcEEEeCCcceEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 009226 279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~-Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~Ad~VI~ 332 (539)
..+.++|.+.+... |.+++.++.|.+|..+ +|+++||...+ ++ .+.|+.||+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 47889998888765 8999999999999876 78888887533 33 588999985
No 260
>PRK07846 mycothione reductase; Reviewed
Probab=97.25 E-value=0.00028 Score=76.15 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+|||||||+|.+|..||.+ +.|++|+++|+ +.+||-|-..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence 4899999999999988766 46999999998 4688876553
No 261
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.25 E-value=0.00024 Score=78.29 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~ 56 (539)
|+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 69999999754
No 262
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.24 E-value=0.00029 Score=76.03 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=33.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+|||||||+|.+|..||++ ..|++|+++|+ +.+||.|-..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence 5999999999999888654 46999999998 5789987653
No 263
>PRK13984 putative oxidoreductase; Provisional
Probab=97.21 E-value=0.00041 Score=77.71 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.+..+|+|||+|.+|+++|..|++.|++|+++|+++..||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3567999999999999999999999999999999999999754
No 264
>PLN02785 Protein HOTHEAD
Probab=97.20 E-value=0.00047 Score=76.59 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=32.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
...||+||||+|.+|+++|.+|++ +.+|++||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 699999999753
No 265
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.20 E-value=0.00047 Score=73.96 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHH-hhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~L-ar~G~~VlvlE~~~~~GG~~~s 63 (539)
....|+|||+|.+|+.||..| ++.|++|.++|+.+.+||..+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 346799999999999999976 4679999999999999999875
No 266
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.20 E-value=0.00029 Score=78.71 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
|||||+|.+||.||+.++++|.+|+|+||++.+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 799999999999999999999999999999976543
No 267
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.18 E-value=0.00046 Score=80.72 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.++||||||+|.+||.||+.+++.|.+|+++||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999885
No 268
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.17 E-value=0.00036 Score=80.17 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~ 57 (539)
.+|+|||||++||++|..|++. |++|+|+|+++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 3799999999999999999998 8999999999873
No 269
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.17 E-value=0.00034 Score=71.23 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=40.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||+|||+|.+|-.||...++.|.+...+|+|..+||-+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 5799999999999999999999999999999999999998754
No 270
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.16 E-value=0.00042 Score=75.12 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p 334 (539)
.++.+.+.+..+..|..+++++.|++|..+ ++. +.|.+.+|+++.+|.||+..
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a~ 270 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMAV 270 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEee
Confidence 366777778888899999999999999754 343 34667789999999988643
No 271
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.00043 Score=73.74 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=31.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
++.|||||||||++|+-||++.||.|.+++++=-|
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 45699999999999999999999999999988654
No 272
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.73 E-value=0.0012 Score=65.82 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=38.7
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~ 61 (539)
+.+...||.||||+|+.|++.|..|.-. +.+|.|||+....|=+.
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hq 89 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQ 89 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceee
Confidence 5666789999999999999999999877 99999999987664433
No 273
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.69 E-value=0.0018 Score=64.68 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=36.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.|||||+|++||+|+-.+-..|-.|++||++...||+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999999999999999999754
No 274
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0018 Score=67.82 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=32.9
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
+-..+.|||||||||++|.-||++.||-|-+.++|-.|
T Consensus 23 ~s~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 23 SSSTSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccCCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 33456899999999999999999999999988887654
No 275
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.61 E-value=0.002 Score=68.17 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
||+|||+|++||++|+.|++. ++|+|+=|.+.-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 999999999999999999999 999999998764
No 276
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.52 E-value=0.0029 Score=67.02 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (539)
++.+.+.+.++..|.++++++.|++|.. ++. +.|++.+|+++.||.||+...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~G 238 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGIG 238 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECCC
Confidence 5556677777889999999999999853 222 457788999999999997543
No 277
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.52 E-value=0.0031 Score=68.81 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY 57 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~~~~~ 57 (539)
....||.||||||-+|++.|++|++. ..+||+||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 44689999999999999999999998 6899999996444
No 278
>PRK09897 hypothetical protein; Provisional
Probab=96.49 E-value=0.0028 Score=69.43 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCC-CC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYG-SH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~~~G-G~ 60 (539)
++|+|||+|.+|+.+|..|.+.+. +|+|+|++..+| |.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 589999999999999999988754 899999999999 54
No 279
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.38 E-value=0.0032 Score=67.68 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=40.7
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (539)
.++.+.+.+.++..|.++++++.|++|.. +++...|.+ +++++.||.||+.+.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a~G 243 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVATG 243 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEECcC
Confidence 46778888888899999999999999943 344555654 556799999996543
No 280
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.35 E-value=0.032 Score=57.03 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~s 63 (539)
.+..+-|||+|++||++|..|-|. |+++.++|--+..||..-.
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 446799999999999999999775 7899999999999997544
No 281
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.32 E-value=0.0044 Score=66.31 Aligned_cols=49 Identities=22% Similarity=0.147 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (539)
++.+.+.+..+..|.++++++.|++|. .+ .|.+++|+++.+|.||..+.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEccC
Confidence 567777788899999999999999984 22 35678999999999996543
No 282
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0034 Score=63.14 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=31.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~ 53 (539)
.-+||.||||+|-+||+||-..++-|++|.+||-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 3479999999999999999999999999999995
No 283
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.21 E-value=0.0047 Score=65.03 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~ 62 (539)
.+|+|||+|..|+.+|..|++.|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 6999999999999999999999999999999999999876
No 284
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.99 E-value=0.0073 Score=64.92 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (539)
.++.+.+.+.++..|.++++++.|++|. .. .|++++|+++.+|.||+...
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a~G 238 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEGVG 238 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEECcC
Confidence 3677778888888999999999999983 22 35667888999999996543
No 285
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0081 Score=60.35 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=35.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
.--|.||||||+|+-||+.++++|.+|.+.|-++.=+--+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 3468999999999999999999999999999997766443
No 286
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=95.95 E-value=0.0085 Score=61.97 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=34.9
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCC
Q 009226 15 YPPIEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNP 55 (539)
Q Consensus 15 ~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~ 55 (539)
..+.+...|||||+|||+.|++.|+.|..+ -+||+++|..+
T Consensus 29 ~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 29 AKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred cccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 445565689999999999999999999865 57999999983
No 287
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.76 E-value=0.031 Score=57.29 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=50.2
Q ss_pred EEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
++.|..|. ..+.+++.+.+.+.|++++.+++|+.|..+ ++++++|.+.+| +++||+||+.
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a 188 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA 188 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence 55677774 689999999999999999999999999876 667778886555 8999999954
No 288
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.71 E-value=0.0036 Score=58.95 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=35.4
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCc
Q 009226 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~ 61 (539)
+-||||||+|-+||+||+..+++ ..+|.++|+.--+||-+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 46999999999999999999855 68999999999888754
No 289
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.49 E-value=0.016 Score=58.66 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=40.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCccc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s 63 (539)
..||..|||+|-+|+.+|.+.+.-|.+|.++|..-.+||-|-.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 4799999999999999999999999999999999899997754
No 290
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.35 E-value=0.017 Score=54.42 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|.|||.|..||.+|+.||++|++|+-+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999999864
No 291
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.06 E-value=0.025 Score=51.65 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=28.1
Q ss_pred EEECCChhHHHHHHHHhhC-----CCeEEEeccCCC
Q 009226 26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPF 56 (539)
Q Consensus 26 IIIGaGl~GL~aA~~Lar~-----G~~VlvlE~~~~ 56 (539)
+|||+|++|++++..|.+. ..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999888 568999999776
No 292
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.02 E-value=0.025 Score=59.08 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~ 336 (539)
++.+.+.+.++..|.++++++.|++|. ++ +|.+.+|+++.+|.||+.+..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATGA 241 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccCC
Confidence 566777788889999999999999883 23 466778999999999976543
No 293
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.02 E-value=0.012 Score=62.62 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=35.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
+|||+|||||-.|.-+|.-.+-.|.+|.++|++|+--|
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 49999999999999999999999999999999998655
No 294
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.80 E-value=0.079 Score=55.79 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=51.5
Q ss_pred ecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009226 274 PIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (539)
Q Consensus 274 p~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~~ 336 (539)
|.-|+ -.+.+.+.+.+..+|++|++++.|..|.+. ++.+.+|++++|++|.||+||+.|..
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence 45565 467788888889999999999999999987 66678899999999999999987654
No 295
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.79 E-value=0.036 Score=52.04 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
|.|||+|..|...|..++++|++|.++|.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 78999999999999999999999999999753
No 296
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.73 E-value=0.037 Score=58.29 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCc-EEEcCEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV 331 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~Ad~VI 331 (539)
-++.+...+..+.+|.+++++++|++|.. + +|++.+|+ +|.|+.+|
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv 255 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV 255 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence 36667777888999999999999999843 2 46677888 49999999
No 297
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=94.68 E-value=0.021 Score=56.54 Aligned_cols=43 Identities=7% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCCCcc
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G------~~VlvlE~~~~~GG~~~ 62 (539)
.....++|||+|+.|..+|++|++.+ ..|+++|+....||...
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 34478999999999999999999999 89999999999988654
No 298
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.62 E-value=0.049 Score=59.24 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
+...|+|||+|.+|+.+|..|++.|++|.++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 345799999999999999999999999999998764
No 299
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.56 E-value=0.04 Score=58.39 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 469999999999999999999999999999999887653
No 300
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.46 E-value=0.045 Score=50.12 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 37899999999999999999999999999976
No 301
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.027 Score=57.08 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=33.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
..|||+|||+|.+|-+||.+.||+|.+.=++ .++.||..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 3599999999999999999999999987665 35688864
No 302
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.08 E-value=0.063 Score=57.03 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=34.8
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCCcc
Q 009226 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~----G~~VlvlE~~~~~GG~~~ 62 (539)
.++|+|||+|.+|...|..|.+. ++ |.++|+++..|+-.+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence 37899999999999999999876 34 999999999987554
No 303
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.05 E-value=0.07 Score=54.86 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCCccc
Q 009226 22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar--~G~~VlvlE~~~~~GG~~~s 63 (539)
...|.|||+|.+|..+|..|-+ .+..|.++|+.+.++|..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 4589999999999999999888 47999999999999999876
No 304
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=93.96 E-value=0.12 Score=54.37 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=48.8
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
++++|..|. ..+.++|.+.+.. |++++.+++|.+|..+ +++ ++|++.+|+.+.||+||+.
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~a 185 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVLA 185 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEEc
Confidence 356787774 5888999988888 9999999999999865 444 6788888888999999853
No 305
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.87 E-value=0.075 Score=55.84 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (539)
++.+.+.+.++..|.+++++++|++|..+ ++. +.|.+.+|+++.||.||+...
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEECcC
Confidence 46666777788899999999999999754 333 467788999999999997543
No 306
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=93.86 E-value=0.35 Score=50.68 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=70.1
Q ss_pred cCCcHHHHHHhcCCChhHHHHHHHHHhcccCCcchhhhhccchhHHHHHHHHHHhhhhccCCCccEEeecCCcChHHHHH
Q 009226 206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285 (539)
Q Consensus 206 ~~~~~~efL~~~~l~~~l~~~l~~~i~l~~~~~~~~~~~~s~~~~l~~i~~~l~s~g~~g~~~ga~lyp~gG~geL~qal 285 (539)
...++.+||++.++++...+-+..+....+|.++. .+ ..+.-.+...| ...| .+-.+||...|++.|
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~i------~a~~G~vSla~---a~~g-l~sV~GGN~qI~~~l 134 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---NI------HAFAGLVSLAG---ATGG-LWSVEGGNWQIFEGL 134 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---ch------hhhhhheeeee---ccCC-ceEecCCHHHHHHHH
Confidence 45788999999999988776666666667777642 12 22222222222 1223 457899999999877
Q ss_pred HHHHHHCCcEEEeCCcceEEEEecCCCc-EEEEEeCC--CcE-EEcCEEEECCCC
Q 009226 286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQD-ILSHKLVLDPSF 336 (539)
Q Consensus 286 ~r~~a~~Gg~i~L~~~V~~I~~~~~~g~-~~gV~l~~--G~~-i~Ad~VI~~p~~ 336 (539)
.+ ..|+.+ +++.|++|.....++. ...|...+ +.. -..|.||+..++
T Consensus 135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL 185 (368)
T ss_pred HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence 54 578899 9999999933222332 23444332 222 235999875433
No 307
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.85 E-value=0.073 Score=55.93 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.+|+|||+|..|+-+|..|++.|++|+++|+.+++...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence 47999999999999999999999999999999887543
No 308
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.80 E-value=0.042 Score=57.01 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=27.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~ 56 (539)
.+|+|+||.|+.+|+.|++|...+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999987 99999999764
No 309
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.72 E-value=0.065 Score=54.78 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
+|.|||+|+-|...|..|+++|++|.++|+++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 310
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.69 E-value=0.091 Score=53.81 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+....|.|||+|.-|...|.+|+++|++|.++.+++
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 445679999999999999999999999999999864
No 311
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.55 E-value=0.099 Score=47.14 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=29.1
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
|.|+|+|-.|+..|+.|+++|++|.++.++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999864
No 312
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.46 E-value=0.084 Score=57.07 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.|.|||.|.+|+++|..|++.|++|++.|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 3899999999999999999999999999998775
No 313
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.45 E-value=0.1 Score=56.08 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 47999999999999999999999999999999887554
No 314
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.40 E-value=0.089 Score=57.14 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 4799999999999999999999999999999987643
No 315
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.19 E-value=0.1 Score=56.36 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 5799999999999999999999999999999988754
No 316
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.87 E-value=0.13 Score=52.04 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|.|||+|..|...|..|+++|++|.++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999875
No 317
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.82 E-value=0.55 Score=49.34 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=46.6
Q ss_pred EEeecCC-cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC-cEEEcCEEEE
Q 009226 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL 332 (539)
Q Consensus 271 ~lyp~gG-~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G-~~i~Ad~VI~ 332 (539)
.+||.-. ..++.++|.+.++..|++|+++++|++| + +++ ..|++.++ ++++||+||+
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIl 135 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVL 135 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEE
Confidence 5799776 6799999999999999999999999999 3 333 56776443 5699999995
No 318
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=92.81 E-value=0.12 Score=55.86 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence 57999999999999999999999999999999887543
No 319
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.79 E-value=0.13 Score=59.69 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (539)
++.+.+.+.++..|.++++++.|++|..+. ++....|.+++|+++.+|.||+.+.
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFSTG 242 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECCC
Confidence 455667778889999999999999996531 2345677888999999999996543
No 320
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.79 E-value=0.12 Score=55.21 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
..|.|||.|..|+..|..|+++|++|..+|++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5699999999999999999999999999998764
No 321
>PRK06370 mercuric reductase; Validated
Probab=92.78 E-value=0.14 Score=55.47 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 57999999999999999999999999999999987654
No 322
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.72 E-value=0.11 Score=52.47 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 489999999999999999999999999999854
No 323
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.63 E-value=0.34 Score=53.28 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=47.6
Q ss_pred cEEeecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009226 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (539)
Q Consensus 270 a~lyp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~Ad~VI~ 332 (539)
++.+| .|. ..+..++.+.+..+|++++.+++|++|..+ ++++++|++. +|+ +|+|++||.
T Consensus 117 a~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn 184 (516)
T TIGR03377 117 AVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN 184 (516)
T ss_pred EEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence 36677 453 478889999999999999999999999876 6777777753 353 689999994
No 324
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.59 E-value=0.14 Score=51.74 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|.|||+|.-|...|..|+++|++|.++|+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 325
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.51 E-value=0.14 Score=55.18 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999988753
No 326
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.47 E-value=0.17 Score=54.49 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=32.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
....|+|+|+|..|+.+|..|++.|++|.++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45679999999999999999999999999999975
No 327
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.44 E-value=0.15 Score=55.13 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 47999999999999999999999999999999887543
No 328
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.44 E-value=0.14 Score=54.98 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 4799999999999999999999999999999988754
No 329
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.35 E-value=0.16 Score=54.91 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999987654
No 330
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.33 E-value=0.16 Score=55.25 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987543
No 331
>PRK07846 mycothione reductase; Reviewed
Probab=92.25 E-value=0.17 Score=54.70 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 579999999999999999999999999999998775
No 332
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.20 E-value=0.17 Score=54.91 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|.++|+.+++..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4799999999999999999999999999999887644
No 333
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.18 E-value=0.17 Score=54.81 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 5799999999999999999999999999999988754
No 334
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.11 E-value=0.21 Score=54.02 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
..|+|||+|..|+-.|..|++.|.+|.++|++++++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999998765
No 335
>PRK04148 hypothetical protein; Provisional
Probab=92.10 E-value=0.14 Score=45.52 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 888889999999999999999876
No 336
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.07 E-value=0.17 Score=49.32 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+++|||+|--|...|..|++.|+.|+++|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 68999999999999999999999999999975
No 337
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.07 E-value=0.17 Score=54.02 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999988773
No 338
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.05 E-value=0.17 Score=52.02 Aligned_cols=33 Identities=36% Similarity=0.424 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|.|||+|.-|...|..++++|++|.++|.++.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999999763
No 339
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.04 E-value=0.15 Score=59.01 Aligned_cols=53 Identities=13% Similarity=0.290 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~p~ 335 (539)
++.+.+.+..+..|.++++++.|++|.. +++..+|++++|+++.+|.||+.+.
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G 235 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAG 235 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCC
Confidence 3455566777889999999999999863 3455678889999999999996543
No 340
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.97 E-value=0.2 Score=50.75 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.|.|||+|..|.-.|..|+++|++|+++|+++.-
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6899999999999999999999999999998653
No 341
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.96 E-value=0.2 Score=54.08 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
..|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 57999999999999999999999999999999987553
No 342
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.48 E-value=0.21 Score=57.89 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
..|+|||+|+.|+-+|..|++.|.+|.++|+.+++-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 4699999999999999999999999999999887643
No 343
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.45 E-value=0.22 Score=50.18 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 599999999999999999999999999998754
No 344
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.44 E-value=0.25 Score=53.70 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence 47999999999999999999999999999999887543
No 345
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.40 E-value=0.16 Score=51.03 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC--------CCCCCCccccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS 65 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~--------~~~GG~~~s~~ 65 (539)
-+|+|||+|..|.-+|....--|-+|+++|.| +.+||+..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 57999999999999999999999999999999 66788877654
No 346
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.39 E-value=0.23 Score=50.36 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|-.|...|..|+++|++|.+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 48999999999999999999999999999853
No 347
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.30 E-value=0.5 Score=44.52 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~~ 333 (539)
.++.+-+.+.++.+|..+++++.|++|..+ +++ +.|++.+|++++|++||+.
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA 133 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA 133 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence 467777878888899899999999999987 444 7899989989999999963
No 348
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.25 E-value=0.25 Score=53.39 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
..++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988754
No 349
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.17 E-value=0.23 Score=51.68 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.+.|||+|..||+.|+.||+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999999999999999864
No 350
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.16 E-value=0.26 Score=50.39 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~ 55 (539)
.|.|||+|..|+++|..|++.| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 5899999874
No 351
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.11 E-value=0.24 Score=54.50 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
.+|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 479999999999999999999999999999988764
No 352
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.10 E-value=0.26 Score=49.92 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
..|.|||+|.-|...|..|+++|++|.++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3599999999999999999999999999998763
No 353
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=90.89 E-value=0.29 Score=52.61 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|++|.++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4799999999999999999999999999999887654
No 354
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=90.65 E-value=0.34 Score=52.53 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 469999999999999999999999999999998876653
No 355
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=90.63 E-value=0.29 Score=52.85 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999999865
No 356
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.62 E-value=0.26 Score=52.58 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|.|||.|..|+..|..|+++|++|.++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999999764
No 357
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.57 E-value=0.31 Score=49.78 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|.|||+|--|...|++|+++|.+|.++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999963
No 358
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.52 E-value=0.68 Score=50.63 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=46.0
Q ss_pred ccEEeecCCc---ChHHHHHHHHHHHCC-cEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009226 269 GALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (539)
Q Consensus 269 ga~lyp~gG~---geL~qal~r~~a~~G-g~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~~ 333 (539)
++.+.|.+|. +.+.++|.+.++..| ++++++++|++|..+. ++. +.|.+ .+|+ ++.|++||+.
T Consensus 170 ~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 170 AATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred eEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence 3456777763 589999999988887 5999999999998752 443 33443 3454 6999999854
No 359
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=90.51 E-value=0.75 Score=50.14 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCCccc
Q 009226 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~~GG~~~s 63 (539)
+||||||||+.|+++|+.|++. |.+|+||||.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 6999999999999999999997 9999999998877754443
No 360
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=90.50 E-value=14 Score=38.83 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
..+-+.+.+.+. .++++++++.|++|..+ ++ .+.|++++|++++|+.||-
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~-~~~v~~~~g~~i~a~~VvD 136 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEET--GD-GVLVVLADGRTIRARVVVD 136 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEec--Cc-eEEEEECCCCEEEeeEEEE
Confidence 456666777766 77889999999999765 33 3567789999999999983
No 361
>PRK10262 thioredoxin reductase; Provisional
Probab=90.46 E-value=0.33 Score=49.69 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
..|+|||+|..|+-+|..|++.|++|+++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998865
No 362
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.43 E-value=0.31 Score=49.49 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDP 53 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~ 53 (539)
.|.|||+|..|...|..|+++|++|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 363
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=90.42 E-value=0.32 Score=52.36 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
-.|+|||+|..|+-.|..|++.|.+|.++|+.+++.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 469999999999999999999999999999988764
No 364
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.24 E-value=0.31 Score=56.73 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
.++|||+|+.|+-+|..|++.|.+|.++|+.+++-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 689999999999999999999999999999987543
No 365
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.24 E-value=0.36 Score=48.93 Aligned_cols=32 Identities=38% Similarity=0.504 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|.-|...|..|+++|++|.++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999875
No 366
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.24 E-value=0.39 Score=44.39 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|+|+|+|-.|..||..|.+.|.+|.++|.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 579999999999999999999999999999853
No 367
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.23 E-value=0.32 Score=49.69 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|..|...|..|+++|++|.++|++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 59999999999999999999999999999865
No 368
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=90.23 E-value=0.35 Score=54.60 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 4799999999999999999999999999999998765
No 369
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.14 E-value=0.33 Score=53.42 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
.+|+|||||.+|+-+|..|+..|++|+++++.+..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 48999999999999999999999999999998876
No 370
>PTZ00058 glutathione reductase; Provisional
Probab=90.13 E-value=0.33 Score=53.83 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 4799999999999999999999999999999988653
No 371
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.12 E-value=0.3 Score=50.50 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|.-|+..|..|+++|++|.+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 59999999999999999999999999999853
No 372
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.00 E-value=0.42 Score=50.27 Aligned_cols=41 Identities=17% Similarity=0.376 Sum_probs=36.1
Q ss_pred CCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 15 YPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 15 ~~~l~~~~~DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+-++++....|.||| +|+-|...|..|+++|+.|.++++++
T Consensus 91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 455666667899999 89999999999999999999999865
No 373
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.91 E-value=0.51 Score=43.74 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.5
Q ss_pred CcccEEEECCCh-hHHHHHHHHhhCCCeEEEeccC
Q 009226 21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 21 ~~~DVIIIGaGl-~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
....|+|||+|- .|..+|..|.+.|.+|.++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 446899999995 6999999999999999999986
No 374
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=89.87 E-value=0.4 Score=51.67 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-.++|||+|..|+-.|-.+++-|.+|+++|+.+++--.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence 35999999999999999999999999999999987553
No 375
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.86 E-value=0.42 Score=48.78 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~ 55 (539)
..|.|||+|..|+..|..|+..|. +|.++|.++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 368999999999999999999887 899999844
No 376
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=89.79 E-value=0.35 Score=53.65 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
-.|+|||+|..|+-.|..|++.|++|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998865
No 377
>PLN02507 glutathione reductase
Probab=89.67 E-value=0.4 Score=52.52 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
-+|+|||+|..|+-.|..|++.|.+|.++++.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 479999999999999999999999999999988753
No 378
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.61 E-value=0.37 Score=50.09 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|.+ |.++++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999997 999998765
No 379
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.51 E-value=0.5 Score=50.79 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 47999999999999999999999999999998877543
No 380
>PRK06116 glutathione reductase; Validated
Probab=89.50 E-value=0.43 Score=51.41 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~G 58 (539)
-.|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 579999999999999999999999999999988764
No 381
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.45 E-value=0.43 Score=47.84 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
..|+|||+|.+|+-+|..|++.|++|.++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999999999999998755
No 382
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.40 E-value=0.4 Score=48.20 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||.|+-|...|..|+++|++|.++|++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999999999999999999999999864
No 383
>PRK12831 putative oxidoreductase; Provisional
Probab=89.30 E-value=0.42 Score=51.81 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 5899999999999999999999999999998764
No 384
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.24 E-value=0.47 Score=48.57 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|.-|+..|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 385
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.01 E-value=0.53 Score=48.06 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|.|||+|.-|...|..|+++|++|.+.+++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999875
No 386
>PRK13748 putative mercuric reductase; Provisional
Probab=88.98 E-value=0.49 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
-.|+|||+|..|+-.|..|++.|++|+++++++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 304 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL 304 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 4799999999999999999999999999998643
No 387
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.87 E-value=1.7 Score=45.95 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=44.3
Q ss_pred cEEeecCCcC---hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC-----cEEEcCEEEEC
Q 009226 270 ALIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVLD 333 (539)
Q Consensus 270 a~lyp~gG~g---eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~Ad~VI~~ 333 (539)
++++|..|.. .+.++|.+.+...|++++.+++|++|..+ ++.+ .|.+.++ .+++||+||..
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~~vV~a 253 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFDGVVVC 253 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecCEEEEC
Confidence 4667776643 55788889999999999999999999865 4443 3433232 37999999853
No 388
>PLN02546 glutathione reductase
Probab=88.70 E-value=0.52 Score=52.33 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
-+|+|||+|..|+-.|..|++.|.+|.++|+.+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999887654
No 389
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.66 E-value=0.6 Score=42.74 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=31.8
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009226 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (539)
Q Consensus 18 l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~ 53 (539)
++.+...|+|||||-.|..-|..|.+.|.+|+|+.+
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 445567899999999999999999999999999954
No 390
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.60 E-value=0.53 Score=49.45 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 569999999999999999999999999999864
No 391
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.59 E-value=0.6 Score=42.90 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=28.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|-|||.|..|...|..|.++|++|.++|++.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 68999999999999999999999999999874
No 392
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.55 E-value=0.49 Score=51.27 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.8
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~--G~~VlvlE~~~~ 56 (539)
+.|.|||+|..|+.+|+.||++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 3599999999999999999998 588999997653
No 393
>PRK14694 putative mercuric reductase; Provisional
Probab=88.52 E-value=0.61 Score=50.60 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
-.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 479999999999999999999999999999753
No 394
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.48 E-value=0.6 Score=44.77 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.....|+|||+|-.|...|..|.+.|.+|+|++++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 344579999999999999999999999999998864
No 395
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.44 E-value=0.7 Score=39.46 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
|||+|.|--|...|-.|.+.|.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999853
No 396
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.47 Score=45.51 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEecc---CCC-CCCCccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSS 63 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~---~~~-~GG~~~s 63 (539)
-.|+|||+|.++-+||++++|+-.|-+++|- |+. +||...|
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 4799999999999999999999999999994 343 3666554
No 397
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=88.41 E-value=0.37 Score=40.69 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+.+...|+|||+|-.+..-+..|.+.|.+|+|+.+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3456789999999999999999999999999999875
No 398
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=88.22 E-value=0.65 Score=44.44 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=31.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
+.....|+|||||-.|...|..|.++|.+|+|+++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 445578999999999999999999999999999863
No 399
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=87.95 E-value=0.58 Score=41.75 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
++|+|+|..+...|..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999854
No 400
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.94 E-value=0.64 Score=48.79 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEeccC
Q 009226 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN 54 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~ 54 (539)
.+|+|||+|-.|+.+|..|++.| .+|++.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 47999999999999999999999 999999997
No 401
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.89 E-value=0.64 Score=47.83 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|--|.+.|..|+++|++|.+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999864
No 402
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.88 E-value=0.75 Score=47.39 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|.|||+|--|...|..|+++|++|.+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999964
No 403
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=87.82 E-value=0.5 Score=47.67 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=31.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CC-eEEEeccCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~-G~-~VlvlE~~~~ 56 (539)
.+++.|+|||+|-+|+..|+.+.|. |. +|-++|..++
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4689999999999999999999887 54 7889987653
No 404
>PRK14727 putative mercuric reductase; Provisional
Probab=87.70 E-value=0.72 Score=50.21 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
-.|+|||+|..|+-.|..|++.|++|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 469999999999999999999999999999754
No 405
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.62 E-value=0.7 Score=44.66 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=29.0
Q ss_pred cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIG-aGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.||| +|.-|.+.|..|+++|++|.++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 89999999999999999999998764
No 406
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=87.60 E-value=1.5 Score=48.91 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-d~VI~ 332 (539)
..+.++|.+.+...|++|+++++|++|..+ ++++++|+.. +++ +++| +.||+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl 272 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL 272 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence 468899999999999999999999999876 6888888653 233 4788 87885
No 407
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=87.48 E-value=0.63 Score=49.19 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|+..|..|+. |++|+.+|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 48999999999999988885 999999998764
No 408
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.46 E-value=0.84 Score=43.57 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~ 54 (539)
...|.|||+|--|+.+|..|+++|. ++.++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3579999999999999999999998 69999875
No 409
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.29 E-value=0.46 Score=41.85 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=29.4
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
........|.|||+|-.|-..|.+|.++|+.|.-+..++
T Consensus 5 ~~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 5 ATQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred ccCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 345567899999999999999999999999998877654
No 410
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.23 E-value=0.62 Score=50.95 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 411
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.07 E-value=0.78 Score=46.82 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~ 56 (539)
.|+|||+|..|.++|..|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4899999999999999999999 58999999753
No 412
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=87.05 E-value=0.63 Score=50.94 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|.|||+|.-|.-.|..|+++|++|.++|+++.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 499999999999999999999999999998754
No 413
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=87.04 E-value=1.2 Score=42.53 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=32.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+.....|+|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3344579999999999999999999999999999873
No 414
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=86.96 E-value=2.1 Score=45.12 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=25.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEe
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHL 51 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~Vlvl 51 (539)
||||||||++|+.||+++||.|.+|+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999999999999
No 415
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.87 E-value=0.84 Score=45.62 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~ 55 (539)
...|+|||.|-.|+.+|-.|+++| .+++++|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 357999999999999999999999 7899999753
No 416
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.81 E-value=0.76 Score=49.69 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 579999999999999999999998 8999998764
No 417
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.79 E-value=0.77 Score=47.95 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCC
Q 009226 19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (539)
Q Consensus 19 ~~~~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~ 57 (539)
++..+|+|.||-|..-|..|++|...+ .+++.|||.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 456799999999999999999999986 889999998764
No 418
>PTZ00052 thioredoxin reductase; Provisional
Probab=86.75 E-value=0.82 Score=50.05 Aligned_cols=32 Identities=9% Similarity=-0.005 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
-+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 37999999999999999999999999999974
No 419
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=86.71 E-value=0.65 Score=44.60 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
...|.|||+|+-|+-.|--.+.+|+.|.++|++.-
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 35799999999999999999999999999999854
No 420
>PRK07121 hypothetical protein; Validated
Probab=86.67 E-value=1.8 Score=47.31 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=43.4
Q ss_pred cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009226 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~A-d~VI~ 332 (539)
...+.++|.+.++..|++|+++++|++|..++ +|++++|+.. +|+ .++| +.||+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVl 233 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVL 233 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence 45789999999999999999999999998762 5688888763 333 4788 88885
No 421
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=86.61 E-value=0.73 Score=50.27 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
-.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 46999999999999999999999999999974
No 422
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=86.54 E-value=2 Score=46.94 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=44.9
Q ss_pred ccEEeecCCc---ChHHHHHHHHHHH-CCcEEEeCCcceEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEC
Q 009226 269 GALIYPIYGQ---GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD 333 (539)
Q Consensus 269 ga~lyp~gG~---geL~qal~r~~a~-~Gg~i~L~~~V~~I~~~~~~g~~~gV~---l~~G~--~i~Ad~VI~~ 333 (539)
++.+.|.+|. +.+.++|++.+.. .|++++++++|..|..+. ++. +.|+ +.+|+ +++||.||+.
T Consensus 171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence 3455677662 5889999998854 589999999999997642 333 3444 33453 6899999854
No 423
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.53 E-value=0.8 Score=49.55 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|+|.|.+|.++|..|.+.|++|.+.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999876
No 424
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.38 E-value=1.1 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~ 54 (539)
...|+|||+|=+|-.++.+|++.|.+ |.++-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45799999999999999999999987 9999876
No 425
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=86.29 E-value=0.74 Score=46.53 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
|.|||.|..|...|..|++.|++|.+++++.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 7899999999999999999999999999874
No 426
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.13 E-value=0.76 Score=50.39 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
-.|.|||+|.-|.-.|..|+++|+.|.++|+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3589999999999999999999999999998864
No 427
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=86.10 E-value=2.8 Score=46.69 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=46.5
Q ss_pred eecCCcC-hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 273 yp~gG~g-eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
++..++| .|.++|.+.+...|.+|+.++.|++++++ +|+++||.. .+|+ .|+|+.||+
T Consensus 112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 4444444 79999999888899999999999999886 789999864 3565 478999995
No 428
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.74 E-value=0.87 Score=46.31 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226 25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~ 55 (539)
|.|||+|..|..+|..|+..|. +|.++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999984
No 429
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.63 E-value=0.77 Score=52.58 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
..|.|||+|..|.-.|..++++|++|.++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998853
No 430
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=85.55 E-value=1 Score=48.15 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHHHHhh--------------CCCeEEEeccCCCCCC
Q 009226 24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGS 59 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar--------------~G~~VlvlE~~~~~GG 59 (539)
.|+|||+|..|+-.|..|+. .|.+|+++|+.+++.+
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence 79999999999999999875 5899999999987754
No 431
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.49 E-value=1.2 Score=47.81 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
..|+|+|.|-+|+.+|..|++.|++|.+.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999987653
No 432
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=85.44 E-value=1 Score=49.23 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCCC
Q 009226 23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La---r~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999996554 45999999999998753
No 433
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=85.37 E-value=0.8 Score=48.46 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=34.1
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEeccCCC
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPF 56 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~-----G~~VlvlE~~~~ 56 (539)
.++...+||||||+|.+|+-+|+.|+.. .++++++|....
T Consensus 13 ~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~ 57 (486)
T COG2509 13 ALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLD 57 (486)
T ss_pred HHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccc
Confidence 3556789999999999999999999864 789999998544
No 434
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.36 E-value=1.1 Score=48.18 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=34.4
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 17 ~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+|+...--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus 1 ~~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 1 SLMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 355566679999999999999999999999999999875
No 435
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=85.36 E-value=0.5 Score=47.25 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGK 46 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~ 46 (539)
...+++|||+|..||+.|..+.+.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~ 27 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYH 27 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhh
Confidence 34689999999999999999988653
No 436
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.08 E-value=1.2 Score=45.46 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~ 56 (539)
..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999999654
No 437
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.07 E-value=0.85 Score=52.18 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
..|.|||+|..|.-.|..++++|++|.++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 438
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=85.05 E-value=1 Score=45.81 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999874
No 439
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.97 E-value=1 Score=49.27 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|+|+|.|.+|++++..|.+.|.+|.+.|.++
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 59999999999999999999999999999753
No 440
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.92 E-value=0.95 Score=49.40 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.-.|+|+|+|..|+.|+..+...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999875
No 441
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.90 E-value=1 Score=48.89 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
..|+|+|.|-+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 442
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.79 E-value=1.3 Score=47.74 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|+|+|+|-.|.++|..|++.|.+|.+.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999765
No 443
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=84.71 E-value=3.1 Score=44.45 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
++||+|||+|++|+++|+.|+++|++|+++|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999874
No 444
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=84.64 E-value=2 Score=45.42 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 14 PYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 14 ~~~~l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
++.+.++....|+|+|+ |..|..++..|.+.|++|..+.++.
T Consensus 52 ~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 52 SFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred cccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 56677777778999996 9999999999999999999998864
No 445
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.46 E-value=1.3 Score=48.20 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 14 PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 14 ~~~~l~~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
-.+.+.++ .|.|+|.|-+|.++|..|.+.|.+|.+.|++.
T Consensus 9 ~~~~~~~~--~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 9 ALPQELSG--RVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred hcccccCC--eEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 34555555 39999999999999999999999999999754
No 446
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=84.44 E-value=2.1 Score=34.67 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEecc
Q 009226 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP 53 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~-G~~VlvlE~ 53 (539)
...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 789999988
No 447
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=84.38 E-value=3.1 Score=44.57 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009226 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~Ad~VI~ 332 (539)
++-+.|.+.++..|++++.+++|+++..+ ++++++|+ ++|+++.|+.||.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~ 158 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL 158 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence 55566778888899999999999999876 56666665 5788899999984
No 448
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.30 E-value=1.1 Score=45.29 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|||.|.-|...|..|++.|++|.++|++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999875
No 449
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=84.24 E-value=1.1 Score=51.79 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~~~ 56 (539)
..|||||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998765
No 450
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.05 E-value=1.3 Score=47.21 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.-.|+|+|+|.-|+.+|..|...|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35799999999999999999999999999998753
No 451
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=84.04 E-value=1.5 Score=47.18 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=32.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
-.+|+|||+|-++-..|..|++.|.+|.++=|++-+
T Consensus 175 GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 175 GKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 468999999999999999999999999999887654
No 452
>PRK06175 L-aspartate oxidase; Provisional
Probab=83.87 E-value=3.8 Score=43.98 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=35.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~ 60 (539)
.++||||||+|.+||.||+.++ .|.+|+++||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999975 79999999999988775
No 453
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.67 E-value=1.9 Score=38.73 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~ 55 (539)
...++|||+|..|...|..|++.| ++|.+++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 357999999999999999999996 8999999874
No 454
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.66 E-value=1.2 Score=47.78 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
...|.|+|-|.+|+++|..|.+.|.+|.+.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 356999999999999999999999999999987766
No 455
>PLN02256 arogenate dehydrogenase
Probab=83.63 E-value=1.6 Score=44.63 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
....|.|||.|.-|...|..|++.|++|.++++++
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 34579999999999999999999999999999875
No 456
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.46 E-value=1.2 Score=45.22 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
..|.|||+|.-|.-.|..++.+|++|.++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999998
No 457
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.39 E-value=1.3 Score=47.29 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
-.|.|||-|.+|.++|..|.+.|++|...|++..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4699999999999999999999999999997653
No 458
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=83.29 E-value=2 Score=45.00 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 18 IEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 18 l~~~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+......|+|.|+ |.-|..++.+|.+.|++|+.+++..
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 3445567999998 9999999999999999999999753
No 459
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=83.23 E-value=3 Score=46.64 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEcCE-EEE
Q 009226 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL 332 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad~-VI~ 332 (539)
...+...|.+.++..|++|+++++|++|.+++ +|+++||... +|+ .++|++ ||+
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVil 269 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVIL 269 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEE
Confidence 35677778888888999999999999999863 6889898653 343 377874 774
No 460
>PRK06847 hypothetical protein; Provisional
Probab=83.11 E-value=3.7 Score=42.71 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 21 ~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
...||+|||||++||++|..|++.|.+|+|+|+++..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4579999999999999999999999999999998753
No 461
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=82.98 E-value=1.7 Score=42.97 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
...++|+|+|+-+...|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999998765
No 462
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.96 E-value=1.6 Score=44.10 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~ 55 (539)
..|+|||+|-+|.++|..|++.|. +|.+++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999996 799999874
No 463
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=82.96 E-value=1.2 Score=51.23 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
..|.|||+|.-|.-.|..++++|++|.++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4599999999999999999999999999998764
No 464
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=82.84 E-value=3.8 Score=40.71 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-----------~G~~i~Ad~VI~ 332 (539)
.++.+.|.+.+...|+++++++.|..+..++ ++++.+|.+. +..+++|+.||.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 5788889998999999999999999998762 4477777643 124789999984
No 465
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=82.83 E-value=1.2 Score=45.43 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.+.|+|+|--|+..|+.|+++|..|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 489999999999999999999988888877664
No 466
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=82.79 E-value=3.7 Score=44.02 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=36.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCCc
Q 009226 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G-~~VlvlE~~~~~GG~~ 61 (539)
||||||+|++|+.||+.++++| .+|+||||++..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999998864
No 467
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=82.73 E-value=3.5 Score=43.33 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
...+||+|||||++|+++|+.|+++|.+|+++|+++..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999998753
No 468
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.71 E-value=1.6 Score=44.32 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
...|+|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999999999999999984
No 469
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=82.39 E-value=1.3 Score=50.59 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La-r~G~~VlvlE~~~~ 56 (539)
..|.|||+|..|.-.|..++ ++|++|.++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 45999999999999999998 69999999999853
No 470
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=82.38 E-value=1.3 Score=44.57 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCcccc
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~~s~ 64 (539)
.-|+|||.|+-|...|..|.++|+.|.++.+....+......
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~ 45 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL 45 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh
Confidence 469999999999999999999999999999988776555544
No 471
>PRK07831 short chain dehydrogenase; Provisional
Probab=82.35 E-value=2.4 Score=41.63 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.5
Q ss_pred cccEEEECC-C-hhHHHHHHHHhhCCCeEEEeccCC
Q 009226 22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGa-G-l~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..-++|.|+ | --|..+|..|++.|.+|++.+++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356999997 5 479999999999999999988763
No 472
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.32 E-value=1.8 Score=44.82 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~ 54 (539)
...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3579999999999999999999998 89999984
No 473
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=82.31 E-value=2.3 Score=40.10 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.0
Q ss_pred CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009226 21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 21 ~~~DVIIIGa-Gl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
....++|+|+ |-.|..+|..|++.|++|.++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3457999995 999999999999999999999876
No 474
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.24 E-value=2.1 Score=44.07 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY 57 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~~~~ 57 (539)
..|.|||+|..|...|..|+..|. +|.++|.++..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 579999999999999999999996 89999998754
No 475
>PLN02712 arogenate dehydrogenase
Probab=81.90 E-value=2.3 Score=48.26 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
...|.|||.|.-|-..|..|.+.|++|.++++++
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3569999999999999999999999999999874
No 476
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=81.88 E-value=3.7 Score=32.54 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeCCC
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~~G 322 (539)
.++.+.+.+..+..|.++++++.|++|..+. ++ +. |+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEecC
Confidence 4677778888899999999999999998772 44 55 888876
No 477
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=81.72 E-value=1.8 Score=44.04 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~--~VlvlE~~~ 55 (539)
..|.|||+|..|...|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999995 899999874
No 478
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=81.70 E-value=1.8 Score=44.02 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999875
No 479
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=81.60 E-value=5.1 Score=45.20 Aligned_cols=60 Identities=28% Similarity=0.408 Sum_probs=45.0
Q ss_pred eecCCc---ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 273 YPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 273 yp~gG~---geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
++..|. ..+..+|.+.++..|++++.+++|.+|..++.++++++|++ .+|+ +++||.||.
T Consensus 223 ~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn 290 (627)
T PLN02464 223 VYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN 290 (627)
T ss_pred EecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence 444453 47888999999999999999999999987521366777765 2444 589999995
No 480
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.50 E-value=1.5 Score=47.04 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.|+|+|+|-.|..+|..|.+.|++|.++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999654
No 481
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.47 E-value=1.4 Score=50.40 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~La-r~G~~VlvlE~~~ 55 (539)
..|.|||+|..|.-.|..++ ++|++|.++|.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 45999999999999999998 8999999999865
No 482
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=81.39 E-value=5.7 Score=44.21 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCCc
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG~~ 61 (539)
||||||+|++|+.||+.++++|.+|+++||....||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999998877743
No 483
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=81.34 E-value=1.6 Score=47.36 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.+|-|||.|.-|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3799999999999999999999999999998654
No 484
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.34 E-value=5.7 Score=44.33 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=36.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH 60 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~~GG~ 60 (539)
|.++||||||+|.+||.||+.++++| .+|+|+||....||.
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 35689999999999999999999875 899999999877764
No 485
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.20 E-value=2.1 Score=39.79 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009226 25 LIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G~~-VlvlE~~ 54 (539)
|+|||+|-.|+..|..|++.|.. +.++|..
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 89999999999999999999984 9999975
No 486
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.18 E-value=1.7 Score=47.54 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
.|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 59999999999999999999999999999865
No 487
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.16 E-value=5.4 Score=44.51 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=46.9
Q ss_pred EeecCCc-ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009226 272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 272 lyp~gG~-geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~Ad~VI~ 332 (539)
+++..++ ..|.++|.+.+...|.+++.++.+.+++.+ ++|+++||.. .+|+ .|+|+.||+
T Consensus 118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 183 (570)
T PRK05675 118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSKATVL 183 (570)
T ss_pred EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence 3444444 488999998888899999999999999875 2688999864 3565 478999995
No 488
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=81.16 E-value=1.5 Score=47.51 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
..|+|||+|.+|+-.|..|++.+++|.++.+++
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 579999999999999999999999999999865
No 489
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=80.97 E-value=4.2 Score=45.18 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=42.6
Q ss_pred cChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 009226 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~Ad-~VI~ 332 (539)
...|.+.|.+.++..|+++++++.|++|+.+ +++++||... +|+ .+.|+ .||+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl 263 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL 263 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence 3578889989999999999999999999987 7889998763 454 47785 4774
No 490
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=80.93 E-value=5.3 Score=41.64 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=36.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~GG 59 (539)
+.++||||||+|+.|+++|+.|++.|.+|+++|++.-.+|
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence 4578999999999999999999999999999999887663
No 491
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.90 E-value=2.1 Score=44.44 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~ 54 (539)
...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3569999999999999999999997 78889985
No 492
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=80.85 E-value=2.1 Score=37.78 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009226 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~-~VlvlE~~ 54 (539)
..|+|+|+|-.|+.+|..|++.|. ++.++|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 469999999999999999999998 68888864
No 493
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=80.71 E-value=4.6 Score=42.48 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=32.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCC--CeEEEeccCCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G--~~VlvlE~~~~ 56 (539)
.|||+|||||++||++|..|+++| .+|+++|+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 389999999999999999999996 99999999874
No 494
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=80.53 E-value=1.9 Score=43.58 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=31.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009226 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~ 55 (539)
...|+|||+|-.|..+|..|+..|.+|.+++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999874
No 495
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.51 E-value=2.1 Score=42.73 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~ 54 (539)
..++|+|+|-.|..+|..|++.|.+|.+++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999999875
No 496
>PRK07045 putative monooxygenase; Reviewed
Probab=80.45 E-value=5 Score=42.08 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=35.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009226 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~~ 57 (539)
+..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 35689999999999999999999999999999998753
No 497
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=80.37 E-value=2.7 Score=34.47 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.7
Q ss_pred EEEECCChhHHHHHHHHhhCC---CeEEEe-ccCC
Q 009226 25 LIVIGTGLPESVISAAASASG---KSVLHL-DPNP 55 (539)
Q Consensus 25 VIIIGaGl~GL~aA~~Lar~G---~~Vlvl-E~~~ 55 (539)
+.|||+|--|.+.|..|.++| .+|.+. ++++
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 679999999999999999999 899966 7763
No 498
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=80.35 E-value=6 Score=39.23 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCCcEEEEEeC-CCcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~Ad~VI~ 332 (539)
.++-+.|.+.++..|+++++++.|+++..+ ++++ .|.+. ++++++||.||.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~ 142 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG 142 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence 456677888888899999999999999876 4443 34333 456899999885
No 499
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=80.32 E-value=1.9 Score=50.93 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009226 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DVIIIGaGl~GL~aA~~Lar~G~~VlvlE~~~~ 56 (539)
.+|||||+|..|+-+|..+.|.|.+|+++.+++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 5799999999999999999999999999998754
No 500
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=80.23 E-value=5.9 Score=39.28 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHCCcEEEeCCcceEEEEecCCC--cEEEEEeCC-----------CcEEEcCEEEE
Q 009226 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~i~L~~~V~~I~~~~~~g--~~~gV~l~~-----------G~~i~Ad~VI~ 332 (539)
.++.+.|.+.+...|++++.++.|+.+..+ ++ ++.||.+.. ..+++|+.||.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 478888888888999999999999999876 34 678887632 24689999884
Done!