Query 009227
Match_columns 539
No_of_seqs 166 out of 229
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 21:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03164 Mon1: Trafficking pro 100.0 5E-109 1E-113 875.7 43.2 365 135-534 2-372 (415)
2 KOG0997 Uncharacterized conser 100.0 2E-103 4E-108 824.5 41.1 370 133-535 106-481 (523)
3 PF01217 Clat_adaptor_s: Clath 96.3 0.062 1.3E-06 49.3 12.0 77 145-221 3-80 (141)
4 PF08217 DUF1712: Fungal domai 95.0 0.26 5.7E-06 56.2 12.7 67 167-233 35-111 (604)
5 KOG0937 Adaptor complexes medi 82.1 13 0.00027 41.1 11.1 76 145-223 2-80 (424)
6 PF03259 Robl_LC7: Roadblock/L 79.7 24 0.00052 29.0 9.8 67 145-211 16-90 (91)
7 PF04099 Sybindin: Sybindin-li 73.4 52 0.0011 30.8 11.2 103 146-257 3-128 (142)
8 KOG3368 Transport protein part 73.2 52 0.0011 31.2 10.8 84 147-232 6-104 (140)
9 KOG3343 Vesicle coat complex C 69.4 78 0.0017 31.0 11.3 120 145-278 10-140 (175)
10 PF13774 Longin: Regulated-SNA 61.9 65 0.0014 26.7 8.5 58 177-234 5-62 (83)
11 KOG2635 Medium subunit of clat 48.0 1.6E+02 0.0035 33.1 10.6 120 147-267 6-130 (512)
12 COG5122 TRS23 Transport protei 38.7 2.7E+02 0.0059 26.0 9.0 84 145-230 4-100 (134)
13 KOG0936 Clathrin adaptor compl 26.9 4E+02 0.0088 26.1 8.5 111 145-267 3-124 (182)
14 PRK11778 putative inner membra 26.6 34 0.00073 36.7 1.4 80 152-238 152-253 (330)
15 PLN02673 quinolinate synthetas 26.5 1.8E+02 0.0039 34.4 7.2 41 134-179 128-168 (724)
No 1
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=100.00 E-value=4.6e-109 Score=875.66 Aligned_cols=365 Identities=46% Similarity=0.760 Sum_probs=347.4
Q ss_pred ccchhHHccCceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCC
Q 009227 135 DASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCT 214 (539)
Q Consensus 135 ~~~~~w~~~~KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~ 214 (539)
+.+++|++|+|||||||+||||||||||||++++++||+||||||||++++|+|++|.+|+++|||+.|+||||||||++
T Consensus 2 ~~~~~~~~~~kh~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~ 81 (415)
T PF03164_consen 2 VHSEEWRKHKKHFFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKT 81 (415)
T ss_pred cchHHHHhcCCeEEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhH-HHHHHhhhCCCCCcccCCCChHHHHHHHHHhcCCCh-hhhhcccccccCChhHHH
Q 009227 215 EEPYESLRGQLELLYGQMILILTK-SINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNP-ATFLHAYTCLPLAYATRQ 292 (539)
Q Consensus 215 ~Es~~~Lr~QL~~Ly~QIlSiLT~-sl~riF~krpNyDLRrLL~Gtd~~l~~Li~~~~~~p-~~lL~a~~cLpL~~s~R~ 292 (539)
+|++++|++||+|||.||+|+||. +|+|+|++||||||||+|+|||+++++++++++++| +++++|++||||+++.|+
T Consensus 82 ~e~~~~l~~qL~~ly~qils~lt~~~l~~~f~~r~n~DlR~lL~gtd~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~R~ 161 (415)
T PF03164_consen 82 GESESQLRKQLDYLYSQILSILTKPQLERIFEKRPNFDLRRLLGGTDRFLDSLLDSMNRSPPSFLLNALECLPLRPSIRD 161 (415)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccHHHHHHHhccCCCcchhhhccchHHHHHHHHHHhcCChHHHHhhcceEEECCHHHHH
Confidence 999999999999999999999997 899999999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHhhh--ccCCCeEEEEEeeCCeEEEeeccCCCcCCcccHHHHHHHhccccccCCCCcccccccCCCCCCceEEEEE
Q 009227 293 AAGAVLQD--VADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYAYV 370 (539)
Q Consensus 293 ~i~~iL~~--~~~~~lLfglL~a~~kLVs~vrpK~~sLhp~DL~LL~N~V~ss~Sfk~~EsW~PICLP~FN~~GFLyaYV 370 (539)
+|+++|.+ .+.+++|||+|+++||||+++|||+|+|||.||+||+|+|.++.+++++|+|+|||||+||++|||||||
T Consensus 162 ~i~~~l~~~~~~~~~llf~lL~~~~klv~~~~~k~~~L~~~Dl~lL~n~v~~~~~~~~~E~W~PICLP~FN~~GFLyayv 241 (415)
T PF03164_consen 162 KITSILLSCLNKRKDLLFGLLFANNKLVSVVRPKKHSLHPSDLHLLFNLVRSSSSFKSGESWIPICLPKFNPNGFLYAYV 241 (415)
T ss_pred HHHHHHHHhccCCCCcEEEEEEECCEEEEEEccCCCcCChHHHHHHHHHHhhccccCCCCceeccCCcccCCCceEEEEe
Confidence 99999998 7889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC--CeEEEEecCCcchhhHhHHHHHHHHHHHHhcchHHHHHHHHHhCCcccccCCCCCCCCCCCCcccchhhhccC
Q 009227 371 HYFDA--DTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRILTQ 448 (539)
Q Consensus 371 ~fl~~--~~~LVLiSt~~daF~~L~~~r~~I~~~L~~~~~l~~I~~al~~~~~~v~dip~~~~~~s~~~~~~~~~~~~~~ 448 (539)
+||++ ++||||||+++|+||+|++++++|+++|.+.|++++|.+++..+.
T Consensus 242 ~~l~~~~~~~lvLiS~~~~~F~~l~~~~~~i~~~L~~~~~~~~l~~~~~~~~---------------------------- 293 (415)
T PF03164_consen 242 SYLDEDSPVCLVLISTDKDAFFELSEAKDRIIDKLEESGCLEALISALSNSS---------------------------- 293 (415)
T ss_pred eeccCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhc----------------------------
Confidence 99999 899999999999999999999999999999999999998886420
Q ss_pred CCccccccccccCCCCceeEEEEeecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEeCCCeeE
Q 009227 449 SPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENYGS 528 (539)
Q Consensus 449 ~~~~~s~~~~~~~g~~~L~HFvYKsk~~~Q~~spe~~~py~~~~~rkRL~~~Yq~L~~~mh~~~~~p~kl~y~~~~~e~l 528 (539)
.|+... .|.|+|||||||+|+++||+||+|++||.+..+|+||+++||+||++||+.+ +|+|++|++++++++
T Consensus 294 ---~~~~~~---ig~p~L~HFiYKsk~~~Q~~~p~~~~~~~~~~~~~rL~~~Y~~L~~~~h~~~-~~~k~~y~~~~~e~~ 366 (415)
T PF03164_consen 294 ---SYSISD---IGIPELRHFIYKSKSNNQFVSPEFSPPYNSPDERKRLFRLYQKLHSSMHSSS-RPLKLIYRWTEKETG 366 (415)
T ss_pred ---CCCccc---CCCCceEEEEEEecCCCceeCCCCCCCCCChHHHHHHHHHHHHHHHHHhCCC-CCeeEEEEecCCcEE
Confidence 011112 2347999999999999999999999999999999999999999999999964 689999999999999
Q ss_pred eeeeee
Q 009227 529 YLFVFI 534 (539)
Q Consensus 529 l~WvT~ 534 (539)
++|+|.
T Consensus 367 l~w~T~ 372 (415)
T PF03164_consen 367 LAWVTS 372 (415)
T ss_pred EEEEcC
Confidence 999996
No 2
>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]
Probab=100.00 E-value=1.8e-103 Score=824.51 Aligned_cols=370 Identities=36% Similarity=0.608 Sum_probs=347.0
Q ss_pred ccccchhHHccCceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEe
Q 009227 133 EDDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCIS 212 (539)
Q Consensus 133 ed~~~~~w~~~~KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS 212 (539)
..+..+.|+.++|||||||+||||||||||++++++++||+|||+|||||.+++.+++|.++++++|||.|+||+|||+|
T Consensus 106 ~~d~~e~~r~q~khifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~~~~~i~si~a~g~k~vfl~kspl~LvA~s 185 (523)
T KOG0997|consen 106 LNDLIEDWRLQKKHIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQVSGLAITSIHAFGNKLVFLQKSPLLLVAVS 185 (523)
T ss_pred cchhhHHHHhCCceEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhhCCceEEEEEecCceEEEEecCcEEEEEEc
Confidence 33444999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhH-HHHHHhhhCCCCCcccCCCChHHHHHHHHHhcCCCh-hhhhcccccccCChhH
Q 009227 213 CTEEPYESLRGQLELLYGQMILILTK-SINRCFEKNPKFDMTPLLGGTDVVFSSLIHSFNWNP-ATFLHAYTCLPLAYAT 290 (539)
Q Consensus 213 ~~~Es~~~Lr~QL~~Ly~QIlSiLT~-sl~riF~krpNyDLRrLL~Gtd~~l~~Li~~~~~~p-~~lL~a~~cLpL~~s~ 290 (539)
+++++.+||+.||++||.||+|+||+ ++.++|++|+||||||||+|+|++++++++.|+.+| .+++||++||||+++.
T Consensus 186 ~t~~Sa~qL~~qL~~ly~QIlS~LT~~ql~~if~~r~NfDLRrLL~gser~~~~ll~~~~~~~~~lllnsi~~lPl~~s~ 265 (523)
T KOG0997|consen 186 RTSQSAAQLLQQLLLLYCQILSILTASQLQRIFNKRQNFDLRRLLSGSERLLDNLLDSMNRDPLVLLLNSIRCLPLNSSF 265 (523)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhcccHHHHHHHHHHHhhCcchhhhccceeccCChhH
Confidence 99999999999999999999999996 899999999999999999999999999999999998 6778999999999999
Q ss_pred HHHHHHHhhh--ccCCCeEEEEEeeCCeEEEeeccCCCcCCcccHHHHHHHhccccccCCCCcccccccCCCCCCceEEE
Q 009227 291 RQAAGAVLQD--VADSGVLFALLMCKCKVVSLVGAQKASLHPDDMLLLSNFVMSSESFRTSESFSPICLPRYNPTAFLYA 368 (539)
Q Consensus 291 R~~i~~iL~~--~~~~~lLfglL~a~~kLVs~vrpK~~sLhp~DL~LL~N~V~ss~Sfk~~EsW~PICLP~FN~~GFLya 368 (539)
|+++.+.|+. ++.+++|||+|+++|||||+||+|||.|||.|||||||+|.+++.|+++|.|+|||||+||++||+||
T Consensus 266 Rd~Ls~~l~~~l~~~~~Llf~iliarnkLva~vr~kk~~LHp~DL~Llfnlvs~~~~~~s~E~WvPIClPkFN~~Gffya 345 (523)
T KOG0997|consen 266 RDQLSALLLSCLAKAKGLLFGILIARNKLVAMVRAKKYLLHPADLHLLFNLVSRQSLFDSSENWVPICLPKFNPDGFFYA 345 (523)
T ss_pred HHHHHHHHHHhhccCCccEEEEEEeCCeeEEEEeccccccChhhHHHHHHHhcccccccccccccceeccccCCCceEEE
Confidence 9999999998 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecC--CeEEEEecCCcchhhHhHHHHHHHHHHHHhcchHHHHHHHHHhCCcccccCCCCCCCCCCCCcccchhhhc
Q 009227 369 YVHYFDA--DTYLMLLTTSSDAFYHLKDCRIRIEQVLLRSNVLSEVQRSMLEGGMRVEDLPVDPLPRSSMPHRLSQQRIL 446 (539)
Q Consensus 369 YV~fl~~--~~~LVLiSt~~daF~~L~~~r~~I~~~L~~~~~l~~I~~al~~~~~~v~dip~~~~~~s~~~~~~~~~~~~ 446 (539)
||+||++ .+||||+|+++|+||.|++||++|+++|.+.|++.++..+.... ++
T Consensus 346 yisyL~~d~~vcllLls~~rdaFf~l~~~r~~i~~kL~~~~~l~~l~~~~~~~-------~~------------------ 400 (523)
T KOG0997|consen 346 YISYLCKDDPVCLLLLSVQRDAFFALKSVRRKIAEKLEKHGALKALNEAAEFD-------PN------------------ 400 (523)
T ss_pred EEeecCCCCCeEEEEEecchhHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCC-------Cc------------------
Confidence 9999985 57999999999999999999999999999999999998765321 00
Q ss_pred cCCCccccccccccCCCCceeEEEEeecCCceEEecCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEeCCCe
Q 009227 447 TQSPEIFSESIVGIGGPTGLWHFIYRSIYLDQYVSSDFSPPISSPQQQKRLYRAYQKLYCSMHDKGIGPHKTQFRRDENY 526 (539)
Q Consensus 447 ~~~~~~~s~~~~~~~g~~~L~HFvYKsk~~~Q~~spe~~~py~~~~~rkRL~~~Yq~L~~~mh~~~~~p~kl~y~~~~~e 526 (539)
| -| .+..+|.|.||||+||+|+..||+||+++.||.+.++|+||.+.|+++|+++|+++ +|+|++|.+.++|
T Consensus 401 ---~-~~---~~q~~g~p~l~HFLy~~ks~~q~~sp~le~p~~~~~erq~L~~~y~rl~~~l~s~s-~~l~~i~~~~e~e 472 (523)
T KOG0997|consen 401 ---P-YY---YVQNVGSPCLRHFLYKSKSSAQFTSPGLEAPYKSETERQRLYAIYARLHSRLHSKS-RPLRTIYTVKEKE 472 (523)
T ss_pred ---c-ce---eeecCCCccchhheecccccchhcCccccCCcCChHHHHHHHHHHHHHhhhhhccC-CcceEEEEecCce
Confidence 0 01 12234568999999999999999999999999999999999999999999999985 7999999999999
Q ss_pred eEeeeeeeh
Q 009227 527 GSYLFVFII 535 (539)
Q Consensus 527 ~ll~WvT~~ 535 (539)
++|+|||.-
T Consensus 473 ~llaWvT~~ 481 (523)
T KOG0997|consen 473 VLLAWVTGT 481 (523)
T ss_pred EEEEEeccc
Confidence 999999964
No 3
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=96.35 E-value=0.062 Score=49.35 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=53.6
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcC-CCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENG-KDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~-~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L 221 (539)
+-+||++..||++++||=+......-......+....... .+.-..+..+++++||...+.||++++...+|++-.+
T Consensus 3 ~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~ 80 (141)
T PF01217_consen 3 KAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL 80 (141)
T ss_dssp EEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred EEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence 4689999999999999753322222233344444333332 2334457789999999999999999999988877554
No 4
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown.
Probab=95.00 E-value=0.26 Score=56.16 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=49.4
Q ss_pred hhhhHHHHHHHHHHHHc--CCCceEEEEeCCeEEEEEeeCC-EEE-EEEeCC------CCCHHHHHHHHHHHHHHHH
Q 009227 167 LAGFSATLQAIISFVEN--GKDRIKLVRAGKHQVVFLIKGP-IYL-VCISCT------EEPYESLRGQLELLYGQMI 233 (539)
Q Consensus 167 lss~mGvlqAIiSf~e~--~~d~L~~I~ag~~~~VFL~r~P-L~L-VaVS~~------~Es~~~Lr~QL~~Ly~QIl 233 (539)
-...+|++|||++|.+. .++..+.|...++++||+.-.| +++ ++|... .-+...|+++|...|....
T Consensus 35 ql~~IGL~qglv~Ft~~Fs~~~~~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~~~~~~~L~~~L~~~Y~~F~ 111 (604)
T PF08217_consen 35 QLRQIGLAQGLVSFTRTFSPDDPCDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTKDGPEQYLLSVLKQAYSMFR 111 (604)
T ss_pred HHHHhhHHHHHHHHHHhcCCCCcccceeecceEEEEEEecCCEEEEEEEecCcCCccccchHHHHHHHHHHHHHHHH
Confidence 34779999999999997 4567888999999999999988 554 344411 1233358888888887654
No 5
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.11 E-value=13 Score=41.10 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=49.8
Q ss_pred ceEEEecCCCcceeecC--CCchhhhhhHHHHHHHHHHHHcCCCce-EEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHH
Q 009227 145 KHFFILSHSGKPIYSRY--GDEHKLAGFSATLQAIISFVENGKDRI-KLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (539)
Q Consensus 145 KH~FILS~AGKPIYSry--GdE~~lss~mGvlqAIiSf~e~~~d~L-~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L 221 (539)
+.+|||+.-|||+.+|. || .-++-.+...-...+-+ .+|.. -.+..++..+++....-||+|+.++.+-+...+
T Consensus 2 sa~fild~~G~~lisr~yr~d--v~~s~~~~F~~~l~~~e-~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v 78 (424)
T KOG0937|consen 2 SAVFILDHKGEVLISRDYRGD--VPMSSTEKFFRKLFEKE-EGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALV 78 (424)
T ss_pred ceEEEEcCCCcEeEeeccccc--CChhhhhhHHHHHhhhc-ccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHH
Confidence 57999999999999884 44 21222222222333333 33333 345667789999999999999999776666554
Q ss_pred HH
Q 009227 222 RG 223 (539)
Q Consensus 222 r~ 223 (539)
..
T Consensus 79 ~~ 80 (424)
T KOG0937|consen 79 LS 80 (424)
T ss_pred HH
Confidence 43
No 6
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=79.72 E-value=24 Score=29.02 Aligned_cols=67 Identities=16% Similarity=0.287 Sum_probs=41.6
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHH----c-CCCceEE--EEeCCeEEEEEeeCC-EEEEEE
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVE----N-GKDRIKL--VRAGKHQVVFLIKGP-IYLVCI 211 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e----~-~~d~L~~--I~ag~~~~VFL~r~P-L~LVaV 211 (539)
+.+.|++..|-||.+...+......+.+.+.++....+ + +.++++. |+..++.+++..-++ .+||.+
T Consensus 16 ~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~~i~i~~~~~~~~L~v~ 90 (91)
T PF03259_consen 16 RGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKGEIIITPVGDFYLLVVL 90 (91)
T ss_dssp EEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEECSTCEEEEEE
T ss_pred eEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCCEEEEEEcCCCEEEEEE
Confidence 46789999999999943343333333333334333222 1 3566665 567888888888888 555543
No 7
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=73.42 E-value=52 Score=30.75 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=57.3
Q ss_pred eEEEecCCCcceeecC----C-------CchhhhhhHHHHHHHHHHHHc-----------CCCceEEEEeCCeEEEEEee
Q 009227 146 HFFILSHSGKPIYSRY----G-------DEHKLAGFSATLQAIISFVEN-----------GKDRIKLVRAGKHQVVFLIK 203 (539)
Q Consensus 146 H~FILS~AGKPIYSry----G-------dE~~lss~mGvlqAIiSf~e~-----------~~d~L~~I~ag~~~~VFL~r 203 (539)
.++|+..+|.-||.|- . ++++.--+.|++..|=++... +.+.++.++.+..++.++.-
T Consensus 3 slyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT 82 (142)
T PF04099_consen 3 SLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFET 82 (142)
T ss_dssp EEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-
T ss_pred EEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEc
Confidence 5899999999999873 1 123344466777766666542 12569999999999988865
Q ss_pred -CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCCC
Q 009227 204 -GPIYLVCISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLG 257 (539)
Q Consensus 204 -~PL~LVaVS~~~Es~~~Lr~QL~~Ly~QIlSiLT~sl~riF~krpNyDLRrLL~ 257 (539)
.-+-+|+++...-+ .++..|...|..+- .+.--|+|-|.+-..+.
T Consensus 83 ~TGlKFvl~td~~~~--~~~~~l~~~~~~lY-------~dyV~KNPfy~~~~pI~ 128 (142)
T PF04099_consen 83 PTGLKFVLITDPNVP--SLRDELLRIYYELY-------VDYVVKNPFYSLEMPIR 128 (142)
T ss_dssp TTS-EEEEEE-TTCC--HCHHHHHHHHHHHH-------HHHHHS-TTS-TTS---
T ss_pred CcCcEEEEEecCCCc--cHHHHHHHHHHHHH-------HHHHhhCCCCCCCCcEe
Confidence 45999999986542 23444433333322 12334677777755443
No 8
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.21 E-value=52 Score=31.19 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=61.8
Q ss_pred EEEecCCCcceeec---------CCCchhhhhhHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEEeeC-CEEEEEE
Q 009227 147 FFILSHSGKPIYSR---------YGDEHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFLIKG-PIYLVCI 211 (539)
Q Consensus 147 ~FILS~AGKPIYSr---------yGdE~~lss~mGvlqAIiSf~e~-----~~d~L~~I~ag~~~~VFL~r~-PL~LVaV 211 (539)
|.||+.-|-=+|-+ -+.|+.---..|.|-.|=||++. .+|..++++.+.-++.|+.-. -|.+|-+
T Consensus 6 ~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~ 85 (140)
T KOG3368|consen 6 FYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLN 85 (140)
T ss_pred EEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEe
Confidence 56666666666643 13444444467888888888873 467899999999999999875 5999998
Q ss_pred eCCCCCHHHHHHHHHHHHHHH
Q 009227 212 SCTEEPYESLRGQLELLYGQM 232 (539)
Q Consensus 212 S~~~Es~~~Lr~QL~~Ly~QI 232 (539)
+..+ ..-+|.-|+++|..+
T Consensus 86 Tdpk--~~~ir~vLq~IYs~l 104 (140)
T KOG3368|consen 86 TDPK--AGSIRDVLQYIYSHL 104 (140)
T ss_pred cCCC--cccHHHHHHHHHHHH
Confidence 8754 345888899999754
No 9
>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.39 E-value=78 Score=30.97 Aligned_cols=120 Identities=22% Similarity=0.354 Sum_probs=76.3
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHH----HHc-CCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISF----VEN-GKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYE 219 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf----~e~-~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~ 219 (539)
|.++||.+.||-||..|=++.-.+. +-.=-.| |.. ..-+-.-...+++.+|+..---|+|-.+....|.+-
T Consensus 10 k~iliLD~~G~Ri~aKYY~~~~~s~----vkeqkaFEK~lF~KT~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl 85 (175)
T KOG3343|consen 10 KAILILDSDGKRILAKYYDDPHPST----VKEQKAFEKNLFSKTSKTESEILLLDGNTVVYKSVIDLHFYVVGSEEENEL 85 (175)
T ss_pred heEEEEcCCCCEeeeeecCCCcchh----HHHHHHHHHHHhcccccccceeEEecCcEEEEEecccEEEEEecCcchhHH
Confidence 5699999999999999977766554 1111122 221 122222234567888888888899999999999988
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCCCChHHHH---HHHHHh---cCCChhhhh
Q 009227 220 SLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVF---SSLIHS---FNWNPATFL 278 (539)
Q Consensus 220 ~Lr~QL~~Ly~QIlSiLT~sl~riF~krpNyDLRrLL~Gtd~~l---~~Li~~---~~~~p~~lL 278 (539)
.|..-|.-+|.-+--+|-+ |-|=|.+|...|.++ +..++. ++.||....
T Consensus 86 ~L~svL~~l~dal~llLr~----------nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia 140 (175)
T KOG3343|consen 86 MLMSVLTCLFDALSLLLRK----------NVEKRELLENLDLIFLALDEIIDGGVILETDPNQIA 140 (175)
T ss_pred HHHHHHHHHHHHHHHHHHh----------ChhHHHHHhhhccceeehhhhccCceEEecCHHHHH
Confidence 8888888777765444433 344456666666433 344543 355666543
No 10
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=61.85 E-value=65 Score=26.74 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHh
Q 009227 177 IISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQMIL 234 (539)
Q Consensus 177 IiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~QL~~Ly~QIlS 234 (539)
|+.-+.-.++.-.++..|+..|.++..+.|+++||+...-+...--.-|+-|......
T Consensus 5 il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~ 62 (83)
T PF13774_consen 5 ILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ 62 (83)
T ss_dssp HHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence 3333332333667888999999999999999999998876666555555555555443
No 11
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.02 E-value=1.6e+02 Score=33.09 Aligned_cols=120 Identities=23% Similarity=0.213 Sum_probs=73.8
Q ss_pred EEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHHHHHH
Q 009227 147 FFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLE 226 (539)
Q Consensus 147 ~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~QL~ 226 (539)
+-|.|..||+|-||.--|---+-+-|.+.|....+..+. .=-++..+..|+|+-.=..||+|.|+..+-..-+=..-|+
T Consensus 6 a~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aFpkLv~~~~-qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl~TL~ 84 (512)
T KOG2635|consen 6 ASINTKTGKAIVSRQFREMSRSRIEGLLAAFPKLVSAGK-QHTFVETDSVRYVYQPLDNLYIVLITTKQSNILEDLETLR 84 (512)
T ss_pred EEEeecCCceeeehHhHhhhHHHHHHHHHHhHHhhccCC-CccEEecccEEEEEEecccEEEEEEeccccchhhHHHHHH
Confidence 458899999999997666555555555655555554332 2336777889999999999999999986533222222333
Q ss_pred HHHHHH---HhhhhH--HHHHHhhhCCCCCcccCCCChHHHHHHHH
Q 009227 227 LLYGQM---ILILTK--SINRCFEKNPKFDMTPLLGGTDVVFSSLI 267 (539)
Q Consensus 227 ~Ly~QI---lSiLT~--sl~riF~krpNyDLRrLL~Gtd~~l~~Li 267 (539)
++-.-| ++.|-. .++..|+---.||=---|+--|.+...-|
T Consensus 85 Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQi 130 (512)
T KOG2635|consen 85 LFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQI 130 (512)
T ss_pred HHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHh
Confidence 333222 233432 25666766666776666665454444333
No 12
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=38.73 E-value=2.7e+02 Score=25.97 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=51.6
Q ss_pred ceEEEecCCCcceeecC-C-Cchhhhh-----hHHHHH---HHHHHHHc--CCCceEEEEeCCeEEEEEe-eCCEEEEEE
Q 009227 145 KHFFILSHSGKPIYSRY-G-DEHKLAG-----FSATLQ---AIISFVEN--GKDRIKLVRAGKHQVVFLI-KGPIYLVCI 211 (539)
Q Consensus 145 KH~FILS~AGKPIYSry-G-dE~~lss-----~mGvlq---AIiSf~e~--~~d~L~~I~ag~~~~VFL~-r~PL~LVaV 211 (539)
.+|||...||--||-|. | +|.++.+ +.+++. ||.+-.-. +...++.+.+++..+.++. -.-+-||+|
T Consensus 4 e~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~ 83 (134)
T COG5122 4 EQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFV 83 (134)
T ss_pred eEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEE
Confidence 37999999999999885 4 4445544 333333 44443333 4456777888887655444 456888888
Q ss_pred eCCCCCHHHHHHHHHHHHH
Q 009227 212 SCTEEPYESLRGQLELLYG 230 (539)
Q Consensus 212 S~~~Es~~~Lr~QL~~Ly~ 230 (539)
+.... .-++-||.-+|.
T Consensus 84 ~~k~t--~na~~ql~kiY~ 100 (134)
T COG5122 84 AEKRT--VNALFQLQKIYS 100 (134)
T ss_pred ecCCc--hhHHHHHHHHHH
Confidence 84332 334455555554
No 13
>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.91 E-value=4e+02 Score=26.07 Aligned_cols=111 Identities=20% Similarity=0.442 Sum_probs=67.2
Q ss_pred ceEEEecCCCcceeecC---CCchhhhhhHHHHHHHHH--------HHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeC
Q 009227 145 KHFFILSHSGKPIYSRY---GDEHKLAGFSATLQAIIS--------FVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISC 213 (539)
Q Consensus 145 KH~FILS~AGKPIYSry---GdE~~lss~mGvlqAIiS--------f~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~ 213 (539)
|-+|||..-|||=.+++ -+|+.---+.+-.-.++| |.+. ++.+ .-.+.|+++-+=.-||||-|-.
T Consensus 3 ~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~-~~l~---g~~d~rlIYrhYATLYFvfvvD 78 (182)
T KOG0936|consen 3 KAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEG-NSLI---GGSDNRLIYRHYATLYFVFVVD 78 (182)
T ss_pred eEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhcc-cccc---CCccceeehheeeeEEEEEEEc
Confidence 56899999999976653 355543344444444444 2222 2211 1126789998889999999987
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCCCChHHHHHHHH
Q 009227 214 TEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGGTDVVFSSLI 267 (539)
Q Consensus 214 ~~Es~~~Lr~QL~~Ly~QIlSiLT~sl~riF~krpNyDLRrLL~Gtd~~l~~Li 267 (539)
.+|++- ..|+++ -++-.+|+|+|++==-.||---......+|..++
T Consensus 79 ~sEsEL---~iLDLI-----QvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV 124 (182)
T KOG0936|consen 79 SSESEL---GILDLI-----QVFVETLDKCFENVCELDLIFNWQKVHAILAEIV 124 (182)
T ss_pred CCcchh---HHHHHH-----HHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHH
Confidence 777763 234433 2455688999987666665444444444444443
No 14
>PRK11778 putative inner membrane peptidase; Provisional
Probab=26.62 E-value=34 Score=36.69 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=47.1
Q ss_pred CCCcceeecCCCchhhhhhH-------------------HHHHHHHH---HHHcCCCceEEEEeCCeEEEEEeeCCEEEE
Q 009227 152 HSGKPIYSRYGDEHKLAGFS-------------------ATLQAIIS---FVENGKDRIKLVRAGKHQVVFLIKGPIYLV 209 (539)
Q Consensus 152 ~AGKPIYSryGdE~~lss~m-------------------GvlqAIiS---f~e~~~d~L~~I~ag~~~~VFL~r~PL~LV 209 (539)
.+||||+...++-....+|+ |++..... +++..|=+.+.+++|+.+=.. .|+-
T Consensus 152 ~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~---~pf~-- 226 (330)
T PRK11778 152 DAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTL---TLFG-- 226 (330)
T ss_pred hcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCC---CCCC--
Confidence 46899998776555444444 22222222 223445566778888765221 1110
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhhhhH
Q 009227 210 CISCTEEPYESLRGQLELLYGQMILILTK 238 (539)
Q Consensus 210 aVS~~~Es~~~Lr~QL~~Ly~QIlSiLT~ 238 (539)
-.+.|.-++++..|+-+|.+++..+..
T Consensus 227 --~~see~Re~~q~~Ld~~y~~F~~~Va~ 253 (330)
T PRK11778 227 --ENTEEGREKFREELEETHQLFKDFVQR 253 (330)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 014455568899999999999887764
No 15
>PLN02673 quinolinate synthetase A
Probab=26.46 E-value=1.8e+02 Score=34.39 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=25.0
Q ss_pred cccchhHHccCceEEEecCCCcceeecCCCchhhhhhHHHHHHHHH
Q 009227 134 DDASISWRKRKKHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIIS 179 (539)
Q Consensus 134 d~~~~~w~~~~KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiS 179 (539)
...+.-|-. --+...||-.|.-+-|-..+-||+++|.++++
T Consensus 128 GCQSqVWL~-----~eldddGkv~F~ADSDA~IVKGL~ALLl~~ls 168 (724)
T PLN02673 128 GCTAQVWLE-----AELDQDGKMRFWADSDSEITKGFCSCLIWVLD 168 (724)
T ss_pred CcccceEEE-----EEEcCCCEEEEEEeCccHHHHHHHHHHHHHHc
Confidence 445666752 11345687666655566667788887776654
Done!