Query 009227
Match_columns 539
No_of_seqs 166 out of 229
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 21:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_S AP-2 complex subunit si 96.7 0.015 5E-07 52.4 11.8 81 145-230 3-86 (142)
2 1w63_Q Adapter-related protein 96.3 0.041 1.4E-06 50.6 12.2 83 145-230 3-86 (158)
3 3tjz_C Coatomer subunit zeta-1 94.8 0.26 8.8E-06 45.3 11.5 72 145-221 14-90 (153)
4 1w63_M Adaptor-related protein 94.3 0.24 8.1E-06 52.1 11.3 76 145-220 4-79 (423)
5 2vgl_M AP-2 complex subunit MU 92.7 0.67 2.3E-05 48.8 11.6 79 145-229 3-83 (435)
6 2j3t_C Trafficking protein par 89.4 4.5 0.00015 36.6 12.1 103 146-257 5-122 (145)
7 2hz5_A Dynein light chain 2A, 86.9 3.2 0.00011 36.1 9.0 69 145-214 28-104 (106)
8 3l7h_A RE64145P, roadblock; LC 82.5 9.9 0.00034 32.5 9.9 69 145-214 19-95 (97)
9 3cue_C Transport protein parti 82.0 4.3 0.00015 37.4 8.1 83 146-230 5-108 (159)
10 1j3w_A Giding PROTEIN-MGLB; gl 76.8 27 0.00092 32.2 11.7 97 142-238 27-135 (163)
11 2j3w_A Sedlin, trafficking pro 60.2 61 0.0021 28.8 10.1 103 146-258 8-125 (142)
12 2nut_C Vesicle-trafficking pro 53.9 1.1E+02 0.0039 28.2 11.3 78 154-231 14-95 (196)
13 3cue_A Transport protein parti 52.0 1E+02 0.0036 29.9 10.8 62 187-256 118-202 (219)
14 3leq_A Uncharacterized protein 51.9 1.1E+02 0.0038 26.6 10.2 95 144-238 19-122 (126)
15 2fh5_A Signal recognition part 47.4 62 0.0021 30.7 8.2 91 145-239 12-106 (185)
16 2lic_A Vitellogenin; lipid tra 41.4 13 0.00043 25.8 1.7 16 1-16 14-29 (35)
17 2vx8_A Nucleoporin-like protei 36.5 2.1E+02 0.0071 26.3 9.9 84 145-232 46-129 (169)
18 1vet_B P14, late endosomal/lys 30.9 2.6E+02 0.009 24.2 12.2 89 144-232 19-115 (125)
19 4b93_A Vesicle-associated memb 30.7 2E+02 0.0068 26.6 8.8 62 170-232 26-87 (189)
20 4afi_A AP-3 complex subunit de 26.8 2.4E+02 0.0081 26.1 8.5 59 172-231 80-138 (173)
No 1
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.72 E-value=0.015 Score=52.44 Aligned_cols=81 Identities=10% Similarity=0.224 Sum_probs=56.1
Q ss_pred ceEEEecCCCcceeecCCC---chhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHH
Q 009227 145 KHFFILSHSGKPIYSRYGD---EHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESL 221 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGd---E~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~L 221 (539)
+-+||++..|||+.+||=. ++.-..+...+...+. ...+..--.+..+++++|+...+.||+||+++.++++-.+
T Consensus 3 ~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~--~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVT--VRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp EEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHH--TCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred EEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHh--cCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 4689999999999999764 3333333333333333 1122233457789999999999999999999988887654
Q ss_pred HHHHHHHHH
Q 009227 222 RGQLELLYG 230 (539)
Q Consensus 222 r~QL~~Ly~ 230 (539)
|++||.
T Consensus 81 ---le~L~~ 86 (142)
T 2vgl_S 81 ---LEAIHN 86 (142)
T ss_dssp ---HHHHHH
T ss_pred ---HHHHHH
Confidence 555553
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.32 E-value=0.041 Score=50.63 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=55.5
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcCC-CceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGK-DRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRG 223 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~~-d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~ 223 (539)
+-+||++..|||+.+||=.......-..++..+...+...+ +.--.+..+++++|+...+.|||||+++.++++-.+
T Consensus 3 ~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~-- 80 (158)
T 1w63_Q 3 RFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT-- 80 (158)
T ss_dssp EEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH--
Confidence 46899999999999997433222211122333333333322 223457789999999999999999999998887654
Q ss_pred HHHHHHH
Q 009227 224 QLELLYG 230 (539)
Q Consensus 224 QL~~Ly~ 230 (539)
|++||.
T Consensus 81 -le~L~~ 86 (158)
T 1w63_Q 81 -LELIHR 86 (158)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 566653
No 3
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=94.81 E-value=0.26 Score=45.31 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=50.4
Q ss_pred ceEEEecCCCcceeecCCCch-----hhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEH-----KLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYE 219 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~-----~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~ 219 (539)
+-+||++..|||+.+||=... +-..+..-+...+ .. .+ -..+..+++++||...+-||||++++.+|++.
T Consensus 14 ~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~---~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 14 KAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT---HR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp EEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH---SS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred eEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH---hC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 679999999999999974321 1122332222222 22 22 24667799999999999999999999998886
Q ss_pred HH
Q 009227 220 SL 221 (539)
Q Consensus 220 ~L 221 (539)
.+
T Consensus 89 ~i 90 (153)
T 3tjz_C 89 ML 90 (153)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 4
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.27 E-value=0.24 Score=52.06 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=49.7
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYES 220 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~ 220 (539)
+-+||++..||++.+||=....-.+..-.+...+.--.+.++.--.+..++.++|+....-|||||+++.++++-.
T Consensus 4 ~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 4 SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp CEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred EEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 5689999999999999743321112122222222111121233345778999999999999999999998887744
No 5
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=92.72 E-value=0.67 Score=48.82 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=52.6
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcC--CCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENG--KDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLR 222 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~--~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr 222 (539)
+-+||++..||++.+||=....-. +.+.++...+... .+.--.|..+++++|+....-|||||+++..+++..
T Consensus 3 ~~i~I~~~~Gk~~l~k~y~~~~~~---~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~-- 77 (435)
T 2vgl_M 3 GGLFIYNHKGEVLISRVYRDDIGR---NAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM-- 77 (435)
T ss_dssp CEEEEECTTCCEEEEEECSSSCCH---HHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH--
T ss_pred EEEEEECCCCCEEEEEecCCCCCh---hHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH--
Confidence 468999999999999975432111 2223322222221 122345778999999999999999999998887744
Q ss_pred HHHHHHH
Q 009227 223 GQLELLY 229 (539)
Q Consensus 223 ~QL~~Ly 229 (539)
-|++||
T Consensus 78 -~le~L~ 83 (435)
T 2vgl_M 78 -VFEFLY 83 (435)
T ss_dssp -HHHHHH
T ss_pred -HHHHHH
Confidence 344444
No 6
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=89.41 E-value=4.5 Score=36.59 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=68.2
Q ss_pred eEEEecCCCcceeec-CCC--------chhhhhhHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEEe-eCCEEEEE
Q 009227 146 HFFILSHSGKPIYSR-YGD--------EHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFLI-KGPIYLVC 210 (539)
Q Consensus 146 H~FILS~AGKPIYSr-yGd--------E~~lss~mGvlqAIiSf~e~-----~~d~L~~I~ag~~~~VFL~-r~PL~LVa 210 (539)
.|+|+..+|.|||.+ ++. ++..--+.|++.++-.+++. +.+.++.+..++.++.+.. -+.+-+|.
T Consensus 5 ~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl 84 (145)
T 2j3t_C 5 NLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVM 84 (145)
T ss_dssp EEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEE
Confidence 488999999999987 221 34444457888888888774 3467899999988877554 45688888
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCCC
Q 009227 211 ISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLG 257 (539)
Q Consensus 211 VS~~~Es~~~Lr~QL~~Ly~QIlSiLT~sl~riF~krpNyDLRrLL~ 257 (539)
++...++ .+|.-|.-||..+- .+.--++|=|.+-..+.
T Consensus 85 ~td~~~~--~i~~~l~~iy~~lY-------v~~v~kNPfy~~~~pI~ 122 (145)
T 2j3t_C 85 NTDLGVG--PIRDVLHHIYSALY-------VEFVVKNPLCPLGQTVQ 122 (145)
T ss_dssp EECTTCC--CCHHHHHHHHHTTH-------HHHTTTCTTSCTTSCCC
T ss_pred EecCCcc--hHHHHHHHHHHHHH-------HHHHhcCCCCCCCCcee
Confidence 8876533 36666666662211 12223566666655554
No 7
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=86.85 E-value=3.2 Score=36.08 Aligned_cols=69 Identities=14% Similarity=0.344 Sum_probs=51.6
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHH------cCCCceEE--EEeCCeEEEEEeeCCEEEEEEeCC
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVE------NGKDRIKL--VRAGKHQVVFLIKGPIYLVCISCT 214 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e------~~~d~L~~--I~ag~~~~VFL~r~PL~LVaVS~~ 214 (539)
+=++|+...|.||-|. +|.+...-|.|.|+.++.... +..|+|+. |+..++.++....+-.+||.|-+.
T Consensus 28 ~G~iIln~~G~pIrSt-~d~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimIapd~~~~LiVvQ~~ 104 (106)
T 2hz5_A 28 QGIIVVNTEGIPIKST-MDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDKDYFLIVIQNP 104 (106)
T ss_dssp EEEEEECTTCCEEEES-SCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC---CEEEEEECC
T ss_pred eEEEEEcCCCCeEEEe-cCchHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEEEecCCEEEEEEecC
Confidence 4589999999999986 677777788889998886443 35678775 568888888888888888888654
No 8
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=82.47 E-value=9.9 Score=32.49 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=53.1
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHH------cCCCceEE--EEeCCeEEEEEeeCCEEEEEEeCC
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVE------NGKDRIKL--VRAGKHQVVFLIKGPIYLVCISCT 214 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e------~~~d~L~~--I~ag~~~~VFL~r~PL~LVaVS~~ 214 (539)
.-++|+...|.||-|.. |.+...-|.+.++.++...+ +..|+|.. |+..++.+......-..|+.|-+.
T Consensus 19 ~G~iI~n~~G~pirst~-d~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimIaPd~~f~liVvQ~~ 95 (97)
T 3l7h_A 19 VGTIVVNNEGIPVKSTL-DNTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNP 95 (97)
T ss_dssp EEEEEEETTSCEEEESS-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEEETTEEEEEEEC-
T ss_pred eEEEEECCCCCEeEEeC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEEEcCCCEEEEEEecC
Confidence 35799999999998865 55666678888888876543 34578875 567899999998888999988654
No 9
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=81.97 E-value=4.3 Score=37.40 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=59.3
Q ss_pred eEEEecCCCcceeec-C--------C------CchhhhhhHHHHHHHHHHHHc-----CCCceEEEEeCCeEEEEEee-C
Q 009227 146 HFFILSHSGKPIYSR-Y--------G------DEHKLAGFSATLQAIISFVEN-----GKDRIKLVRAGKHQVVFLIK-G 204 (539)
Q Consensus 146 H~FILS~AGKPIYSr-y--------G------dE~~lss~mGvlqAIiSf~e~-----~~d~L~~I~ag~~~~VFL~r-~ 204 (539)
.|+|+..+|.|||.| + | +++..--+.|++.++-.+++. ..|.+..+.+++.++.+..- +
T Consensus 5 ~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~T 84 (159)
T 3cue_C 5 SFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTAS 84 (159)
T ss_dssp EEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSS
T ss_pred EEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCC
Confidence 589999999999976 3 1 133344467788888888874 23789999999988876654 4
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHH
Q 009227 205 PIYLVCISCTEEPYESLRGQLELLYG 230 (539)
Q Consensus 205 PL~LVaVS~~~Es~~~Lr~QL~~Ly~ 230 (539)
-+-||.++...+ ..++.-|..||.
T Consensus 85 giKFvl~td~~~--~~i~~~l~~iy~ 108 (159)
T 3cue_C 85 GLWFVLLSDFKQ--QSYTQVLQYIYS 108 (159)
T ss_dssp CCEEEEECCSSS--SCTHHHHHHHHH
T ss_pred CCEEEEEeCCCc--chHHHHHHHHHH
Confidence 688999987543 346666666664
No 10
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=76.77 E-value=27 Score=32.16 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=63.6
Q ss_pred ccCceEEEecCCCcceee-----cCC--CchhhhhhHHHHHHHHHHHHc--CCCceE--EEEeCCeEEEEEeeCC-EEEE
Q 009227 142 KRKKHFFILSHSGKPIYS-----RYG--DEHKLAGFSATLQAIISFVEN--GKDRIK--LVRAGKHQVVFLIKGP-IYLV 209 (539)
Q Consensus 142 ~~~KH~FILS~AGKPIYS-----ryG--dE~~lss~mGvlqAIiSf~e~--~~d~L~--~I~ag~~~~VFL~r~P-L~LV 209 (539)
..-+|.+|+|.-|-+|-+ .-+ |.+.+++.++.++++..-... +..+++ .|+..+..+++..=|+ -+|+
T Consensus 27 ~Gv~~avlvs~DGl~ia~~~~~~~~~~~d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~ 106 (163)
T 1j3w_A 27 TGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLV 106 (163)
T ss_dssp HCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEE
T ss_pred CCceEEEEEcCCCCEEEeecccccCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEE
Confidence 356899999999999998 433 555566655555554432211 223333 3444555555555566 7888
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhhhhH
Q 009227 210 CISCTEEPYESLRGQLELLYGQMILILTK 238 (539)
Q Consensus 210 aVS~~~Es~~~Lr~QL~~Ly~QIlSiLT~ 238 (539)
.+...+-....++.++.-+=.+|-.+|+.
T Consensus 107 Vla~~~a~lG~v~~~m~~~v~~l~~~L~~ 135 (163)
T 1j3w_A 107 LVFDETAPLGKVKLHGKRASEALARIAEE 135 (163)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 88887778888888888777777666654
No 11
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=60.18 E-value=61 Score=28.80 Aligned_cols=103 Identities=15% Similarity=0.284 Sum_probs=61.0
Q ss_pred eEEEecCCCcceeec-CCCc-------hhhhhhHHHHHHHHHHHHc----CCC-ceEEE-EeCCeEEE-EEeeCCEEEEE
Q 009227 146 HFFILSHSGKPIYSR-YGDE-------HKLAGFSATLQAIISFVEN----GKD-RIKLV-RAGKHQVV-FLIKGPIYLVC 210 (539)
Q Consensus 146 H~FILS~AGKPIYSr-yGdE-------~~lss~mGvlqAIiSf~e~----~~d-~L~~I-~ag~~~~V-FL~r~PL~LVa 210 (539)
-|.|+...|.|||.+ ++.. +.---+-+++.+...+++. .++ .+..+ ...+.++. |..-+.+-+|.
T Consensus 8 ~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kfvl 87 (142)
T 2j3w_A 8 YFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIM 87 (142)
T ss_dssp EEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEEE
T ss_pred EEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEEEE
Confidence 588999999999977 4442 2211234677888777764 122 23322 23444444 44445577777
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHhhhCCCCCcccCCCC
Q 009227 211 ISCTEEPYESLRGQLELLYGQMILILTKSINRCFEKNPKFDMTPLLGG 258 (539)
Q Consensus 211 VS~~~Es~~~Lr~QL~~Ly~QIlSiLT~sl~riF~krpNyDLRrLL~G 258 (539)
+.... .+..+|.-|.-+|..-+ +..- +|=|.+-..+..
T Consensus 88 ~~d~~-~~~~i~~~~~~iy~~Y~--------~~v~-NPfy~~~~pI~s 125 (142)
T 2j3w_A 88 LHDVR-QEDGIKNFFTDVYDLYI--------KFAM-NPFYEPNSPIRS 125 (142)
T ss_dssp EESSC-CHHHHHHHHHHHHHHHH--------HHHH-STTCCTTCCCCC
T ss_pred EeCCC-CcHHHHHHHHHHHHHHH--------HHhc-CCCCCCCCceec
Confidence 76542 46778888888884322 2233 787877665544
No 12
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=53.87 E-value=1.1e+02 Score=28.20 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=52.4
Q ss_pred CcceeecCCCc----hhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHHHHHHHHH
Q 009227 154 GKPIYSRYGDE----HKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLY 229 (539)
Q Consensus 154 GKPIYSryGdE----~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~QL~~Ly 229 (539)
|.|+....-.+ ..+..+-.++..|+.-+....+.-.++..|++.|.|+..+.|+++||+...-|...-..-|+-|.
T Consensus 14 ~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~ 93 (196)
T 2nut_C 14 GLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 93 (196)
T ss_dssp CCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred CcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHH
Confidence 77777654321 13455666666666666543445567888999999999999999999987767655444444444
Q ss_pred HH
Q 009227 230 GQ 231 (539)
Q Consensus 230 ~Q 231 (539)
..
T Consensus 94 ~~ 95 (196)
T 2nut_C 94 SE 95 (196)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 13
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=52.00 E-value=1e+02 Score=29.95 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=37.6
Q ss_pred ceEEEEeCCeEEEE-EeeCCEEEEEEeCCCCCH----------------------HHHHHHHHHHHHHHHhhhhHHHHHH
Q 009227 187 RIKLVRAGKHQVVF-LIKGPIYLVCISCTEEPY----------------------ESLRGQLELLYGQMILILTKSINRC 243 (539)
Q Consensus 187 ~L~~I~ag~~~~VF-L~r~PL~LVaVS~~~Es~----------------------~~Lr~QL~~Ly~QIlSiLT~sl~ri 243 (539)
.++.++.++.++.+ ..-+-+-||.+.....++ ..+|.-|.-||.--+ +.
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYv--------d~ 189 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYS--------DY 189 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHH--------HH
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHH--------HH
Confidence 57788888877654 444568888887654422 567777777773322 23
Q ss_pred hhhCCCCCcccCC
Q 009227 244 FEKNPKFDMTPLL 256 (539)
Q Consensus 244 F~krpNyDLRrLL 256 (539)
.-|+|=|++-.-+
T Consensus 190 VmkNPFY~~~~pI 202 (219)
T 3cue_A 190 VMKDPSYSMEMPI 202 (219)
T ss_dssp HHSCTTCCTTSCC
T ss_pred HhcCCCCCCCCcc
Confidence 3356777765444
No 14
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=51.87 E-value=1.1e+02 Score=26.55 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=56.7
Q ss_pred CceEEEecCCCcceeecCC-Cc---hhhhhhHHHHHHHHHHHH--cCCCceE--EEEeCCeEEEEEeeCC-EEEEEEeCC
Q 009227 144 KKHFFILSHSGKPIYSRYG-DE---HKLAGFSATLQAIISFVE--NGKDRIK--LVRAGKHQVVFLIKGP-IYLVCISCT 214 (539)
Q Consensus 144 ~KH~FILS~AGKPIYSryG-dE---~~lss~mGvlqAIiSf~e--~~~d~L~--~I~ag~~~~VFL~r~P-L~LVaVS~~ 214 (539)
=+|..++|.-|-||-+..+ +. +.++..++.++++..-.. -+.++++ .|+..+..+++..=++ .+|+.+...
T Consensus 19 v~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~~G~l~v~~ag~~a~L~vla~~ 98 (126)
T 3leq_A 19 VDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMGKGYLILTAAGPGAHLVVLTRQ 98 (126)
T ss_dssp EEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECSSCEEEEEESSTTEEEEEEECT
T ss_pred ceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeCCCEEEEEEeCCCcEEEEEeCC
Confidence 4689999999999998764 32 456655555555433211 1233443 3455666666666675 888888888
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhH
Q 009227 215 EEPYESLRGQLELLYGQMILILTK 238 (539)
Q Consensus 215 ~Es~~~Lr~QL~~Ly~QIlSiLT~ 238 (539)
+-....++.++.-+=.+|-..||.
T Consensus 99 ~a~lG~v~~em~~~v~ri~~~L~~ 122 (126)
T 3leq_A 99 GADVGVVAYQMNMLVKKIGEHLSA 122 (126)
T ss_dssp TCCHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 878888888888887777666663
No 15
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=47.42 E-value=62 Score=30.70 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=57.1
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHH--HHHcCCCceEEEEeCCe--EEEEEeeCCEEEEEEeCCCCCHHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIIS--FVENGKDRIKLVRAGKH--QVVFLIKGPIYLVCISCTEEPYES 220 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiS--f~e~~~d~L~~I~ag~~--~~VFL~r~PL~LVaVS~~~Es~~~ 220 (539)
.||.|||..|==+|+.-|... .+...+.+||. +.|+.... ..+..++. +..|.+.=-|+||+|-..--...+
T Consensus 12 D~~~IfTkGGvVLWs~~~~~~---~~~~~IN~LIr~VlLEER~~~-~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 12 DFFTIFSKGGLVLWCFQGVSD---SCTGPVNALIRSVLLQERGGN-NSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SEEEEEETTSBEEEEEBTTTB---SCCCHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred eEEEEEeCCeEEEEeecCCcc---cccchHHHHHHHhhhccccCC-CceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 589999999999999434322 23456899999 55653321 13444554 677888889999999876544555
Q ss_pred HHHHHHHHHHHHHhhhhHH
Q 009227 221 LRGQLELLYGQMILILTKS 239 (539)
Q Consensus 221 Lr~QL~~Ly~QIlSiLT~s 239 (539)
+-.-|+-+...++-.....
T Consensus 88 iD~LL~~v~~~Fv~~Y~~~ 106 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYRTE 106 (185)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444333
No 16
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=41.40 E-value=13 Score=25.78 Aligned_cols=16 Identities=69% Similarity=0.536 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCccccc
Q 009227 1 MSTSSSSPSSDEELIF 16 (539)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (539)
+|+||||+|++++.++
T Consensus 14 istssssissseendf 29 (35)
T 2lic_A 14 ISTSSSSISSSEENDF 29 (35)
T ss_dssp SCSCSSCCSTTCSCSS
T ss_pred cccccccccccccccc
Confidence 4789999998877654
No 17
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=36.49 E-value=2.1e+02 Score=26.32 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=54.8
Q ss_pred ceEEEecCCCcceeecCCCchhhhhhHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHHHH
Q 009227 145 KHFFILSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQ 224 (539)
Q Consensus 145 KH~FILS~AGKPIYSryGdE~~lss~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~Q 224 (539)
-.|-+++..|.+++..-.... .+-.+..+|+.-+.. .+.-.++..|+..|.|+..+.|++|||+...-+...--.-
T Consensus 46 ilYa~VaRG~~VLae~t~~~g---nf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~f 121 (169)
T 2vx8_A 46 ILFAVVARGTTILAKHAWCGG---NFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSF 121 (169)
T ss_dssp CCEEEEEETTEEEEEEESSCB---SHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHH
T ss_pred eEEEEEEcCCEEEEEeccCCC---CHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHH
Confidence 467777887777775323221 334455666655544 3445678889999999999999999999877666554444
Q ss_pred HHHHHHHH
Q 009227 225 LELLYGQM 232 (539)
Q Consensus 225 L~~Ly~QI 232 (539)
|+-|....
T Consensus 122 LedI~~eF 129 (169)
T 2vx8_A 122 LNEVKKRF 129 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 18
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=30.88 E-value=2.6e+02 Score=24.21 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred CceEEEecCCCcceeecCC---CchhhhhhHHHHHHHHHHHHc---CCCceE--EEEeCCeEEEEEeeCCEEEEEEeCCC
Q 009227 144 KKHFFILSHSGKPIYSRYG---DEHKLAGFSATLQAIISFVEN---GKDRIK--LVRAGKHQVVFLIKGPIYLVCISCTE 215 (539)
Q Consensus 144 ~KH~FILS~AGKPIYSryG---dE~~lss~mGvlqAIiSf~e~---~~d~L~--~I~ag~~~~VFL~r~PL~LVaVS~~~ 215 (539)
=+|.+++|.-|-+|=+.-+ |.+.+++.++.++.+..-... .+++++ .|...+..+.+..=+..+|+.++...
T Consensus 19 v~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~ 98 (125)
T 1vet_B 19 VQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKET 98 (125)
T ss_dssp EEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCC
Confidence 3799999999999986544 334566666666555443322 224454 34555555444444678898888877
Q ss_pred CCHHHHHHHHHHHHHHH
Q 009227 216 EPYESLRGQLELLYGQM 232 (539)
Q Consensus 216 Es~~~Lr~QL~~Ly~QI 232 (539)
-....++.+..-+-.+|
T Consensus 99 a~lGlv~~~m~~lv~~L 115 (125)
T 1vet_B 99 VGFGMLKAKAQALVQYL 115 (125)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 77777777766555443
No 19
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=30.71 E-value=2e+02 Score=26.62 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 009227 170 FSATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQM 232 (539)
Q Consensus 170 ~mGvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~QL~~Ly~QI 232 (539)
|..+...|+..+.. .+.-.++..|++.|.|+..+.|+++||+...-|...--.-|+=|....
T Consensus 26 f~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF 87 (189)
T 4b93_A 26 FLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRF 87 (189)
T ss_dssp HHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHH
Confidence 33444455444432 345568899999999999999999999987666554444444444333
No 20
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=26.84 E-value=2.4e+02 Score=26.07 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCCCceEEEEeCCeEEEEEeeCCEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 009227 172 ATLQAIISFVENGKDRIKLVRAGKHQVVFLIKGPIYLVCISCTEEPYESLRGQLELLYGQ 231 (539)
Q Consensus 172 GvlqAIiSf~e~~~d~L~~I~ag~~~~VFL~r~PL~LVaVS~~~Es~~~Lr~QL~~Ly~Q 231 (539)
.+...|+..... ++.-.++..|++.|.|+.++.++++||+...-+...--.-|+-|...
T Consensus 80 ~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~e 138 (173)
T 4afi_A 80 EVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 138 (173)
T ss_dssp HHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHH
Confidence 344444444433 24556788999999999999999999998766665444444444433
Done!