Query 009228
Match_columns 539
No_of_seqs 359 out of 2021
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 21:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 1.2E-68 2.7E-73 551.7 29.3 373 148-537 83-479 (484)
2 cd08032 LARP_7 La RNA-binding 99.9 8.4E-27 1.8E-31 196.2 6.5 80 195-274 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 99.9 1.6E-26 3.5E-31 192.5 5.1 76 199-274 2-77 (77)
4 cd08035 LARP_4 La RNA-binding 99.9 4.8E-26 1E-30 188.0 4.9 74 198-273 1-74 (75)
5 cd08029 LA_like_fungal La-moti 99.9 1.6E-25 3.5E-30 186.3 5.1 75 199-274 2-76 (76)
6 cd08036 LARP_5 La RNA-binding 99.9 1.3E-25 2.8E-30 184.4 4.3 73 199-273 2-74 (75)
7 smart00715 LA Domain in the RN 99.9 2.1E-25 4.6E-30 187.4 5.7 80 195-275 1-80 (80)
8 cd08028 LARP_3 La RNA-binding 99.9 2.8E-25 6.1E-30 187.2 5.9 79 195-274 2-82 (82)
9 cd08030 LA_like_plant La-motif 99.9 3.9E-25 8.5E-30 188.9 5.3 77 198-274 2-90 (90)
10 cd08031 LARP_4_5_like La RNA-b 99.9 1.8E-24 3.9E-29 179.4 5.2 74 199-274 2-75 (75)
11 cd08037 LARP_1 La RNA-binding 99.9 1.3E-23 2.8E-28 173.0 5.2 72 199-274 2-73 (73)
12 cd08038 LARP_2 La RNA-binding 99.9 2.4E-23 5.3E-28 171.3 5.4 72 199-274 2-73 (73)
13 cd08034 LARP_1_2 La RNA-bindin 99.9 2.6E-23 5.6E-28 171.6 4.9 72 199-274 2-73 (73)
14 cd07323 LAM LA motif RNA-bindi 99.9 4.1E-23 9E-28 171.6 5.2 74 199-274 2-75 (75)
15 KOG2591 c-Mpl binding protein, 99.9 4.5E-22 9.6E-27 211.8 12.9 151 187-373 86-238 (684)
16 KOG4213 RNA-binding protein La 99.9 8.8E-22 1.9E-26 185.1 7.5 154 194-367 10-170 (205)
17 PF05383 La: La domain; Inter 99.8 5.5E-21 1.2E-25 152.9 3.0 60 201-260 1-61 (61)
18 TIGR01659 sex-lethal sex-letha 99.7 5.2E-16 1.1E-20 163.0 18.5 81 285-382 190-270 (346)
19 PLN03134 glycine-rich RNA-bind 99.7 3.7E-16 8E-21 145.1 13.3 80 287-383 33-112 (144)
20 TIGR01648 hnRNP-R-Q heterogene 99.6 1.9E-14 4E-19 159.5 18.2 77 287-388 232-310 (578)
21 COG5193 LHP1 La protein, small 99.5 1.3E-14 2.8E-19 151.0 2.5 163 186-365 45-244 (438)
22 TIGR01659 sex-lethal sex-letha 99.5 3.7E-13 8E-18 141.6 13.4 81 286-383 105-185 (346)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.9E-13 8.4E-18 139.4 10.2 81 288-385 269-349 (352)
24 KOG0121 Nuclear cap-binding pr 99.4 1.3E-12 2.8E-17 118.1 9.8 85 286-387 34-118 (153)
25 PF00076 RRM_1: RNA recognitio 99.4 6.9E-13 1.5E-17 105.1 7.1 68 291-376 1-68 (70)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.2E-12 2.6E-17 135.8 9.5 79 288-383 3-81 (352)
27 TIGR01628 PABP-1234 polyadenyl 99.3 5.7E-12 1.2E-16 139.6 11.8 82 286-385 283-364 (562)
28 PLN03120 nucleic acid binding 99.3 4.7E-12 1E-16 127.5 10.0 76 287-383 3-78 (260)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.3 6.9E-12 1.5E-16 136.7 11.6 79 288-383 295-373 (509)
30 TIGR01645 half-pint poly-U bin 99.3 1.8E-11 3.8E-16 136.5 14.2 80 287-383 203-282 (612)
31 KOG0107 Alternative splicing f 99.3 5.7E-12 1.2E-16 119.2 7.3 75 288-384 10-84 (195)
32 KOG0105 Alternative splicing f 99.3 1.3E-11 2.9E-16 117.6 8.7 75 287-381 5-79 (241)
33 KOG0113 U1 small nuclear ribon 99.2 1.6E-11 3.4E-16 124.2 8.8 86 286-388 99-184 (335)
34 KOG0130 RNA-binding protein RB 99.2 2.4E-11 5.1E-16 110.9 8.5 87 284-387 68-154 (170)
35 TIGR01622 SF-CC1 splicing fact 99.2 2.3E-11 4.9E-16 131.0 9.9 79 288-383 186-264 (457)
36 KOG0117 Heterogeneous nuclear 99.2 2.8E-11 6.1E-16 127.7 9.9 171 192-388 132-334 (506)
37 KOG0122 Translation initiation 99.2 2.1E-11 4.5E-16 120.5 8.4 80 287-383 188-267 (270)
38 PF14259 RRM_6: RNA recognitio 99.2 3.4E-11 7.4E-16 96.6 7.3 64 291-372 1-64 (70)
39 KOG0114 Predicted RNA-binding 99.2 4.9E-11 1.1E-15 104.4 8.5 75 287-383 17-91 (124)
40 PLN03121 nucleic acid binding 99.2 5.2E-11 1.1E-15 118.5 9.5 76 287-383 4-79 (243)
41 TIGR01645 half-pint poly-U bin 99.2 4.1E-11 8.9E-16 133.6 8.6 78 287-381 106-183 (612)
42 TIGR01622 SF-CC1 splicing fact 99.2 7.6E-11 1.6E-15 127.0 10.4 81 284-382 85-165 (457)
43 TIGR01628 PABP-1234 polyadenyl 99.2 8E-11 1.7E-15 130.5 10.5 79 286-382 176-258 (562)
44 smart00362 RRM_2 RNA recogniti 99.2 1.1E-10 2.3E-15 90.7 8.2 66 290-374 1-66 (72)
45 KOG0144 RNA-binding protein CU 99.2 6.2E-11 1.3E-15 124.6 8.8 144 211-388 63-209 (510)
46 KOG0148 Apoptosis-promoting RN 99.2 1E-10 2.2E-15 117.2 9.9 73 285-380 161-233 (321)
47 COG0724 RNA-binding proteins ( 99.2 3.2E-10 7E-15 108.5 12.5 79 288-383 115-193 (306)
48 TIGR01648 hnRNP-R-Q heterogene 99.1 1.5E-10 3.2E-15 128.8 11.1 69 286-372 56-124 (578)
49 PLN03213 repressor of silencin 99.1 2E-10 4.3E-15 122.3 9.3 77 286-383 8-86 (759)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.1E-10 4.6E-15 125.4 9.6 74 288-384 2-77 (481)
51 smart00360 RRM RNA recognition 99.1 3.8E-10 8.3E-15 87.2 7.7 69 293-378 1-69 (71)
52 KOG0125 Ataxin 2-binding prote 99.1 2E-10 4.4E-15 117.5 7.1 81 287-386 95-175 (376)
53 cd00590 RRM RRM (RNA recogniti 99.1 9.6E-10 2.1E-14 85.8 8.9 72 290-379 1-72 (74)
54 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 5.3E-10 1.1E-14 122.4 9.9 75 287-383 274-349 (481)
55 KOG0108 mRNA cleavage and poly 99.0 3.4E-10 7.4E-15 121.9 7.9 82 289-387 19-100 (435)
56 KOG0116 RasGAP SH3 binding pro 99.0 1E-09 2.2E-14 117.7 11.3 79 288-386 288-366 (419)
57 KOG0117 Heterogeneous nuclear 99.0 1.8E-09 3.9E-14 114.2 12.3 71 286-373 81-151 (506)
58 KOG0111 Cyclophilin-type pepti 99.0 1.7E-10 3.7E-15 112.6 4.3 86 286-388 8-93 (298)
59 KOG0149 Predicted RNA-binding 99.0 8.6E-10 1.9E-14 108.7 7.2 79 286-382 10-88 (247)
60 KOG0126 Predicted RNA-binding 99.0 7E-11 1.5E-15 112.5 -0.6 84 284-384 31-114 (219)
61 KOG4212 RNA-binding protein hn 99.0 3E-09 6.5E-14 112.2 10.6 77 286-380 42-119 (608)
62 KOG0127 Nucleolar protein fibr 98.9 2.1E-09 4.6E-14 115.9 8.5 160 202-385 19-196 (678)
63 KOG4207 Predicted splicing fac 98.9 1.4E-09 3E-14 105.5 5.9 79 289-384 14-92 (256)
64 PF13893 RRM_5: RNA recognitio 98.9 3.6E-09 7.7E-14 82.0 7.1 55 305-381 1-55 (56)
65 KOG0131 Splicing factor 3b, su 98.9 3.2E-09 6.9E-14 101.3 6.2 80 287-383 8-87 (203)
66 KOG0127 Nucleolar protein fibr 98.8 6.2E-09 1.3E-13 112.4 7.9 80 288-384 292-377 (678)
67 KOG0145 RNA-binding protein EL 98.8 7.1E-09 1.5E-13 103.5 6.9 83 284-383 123-207 (360)
68 TIGR01642 U2AF_lg U2 snRNP aux 98.8 7.5E-09 1.6E-13 112.9 7.8 73 284-380 171-255 (509)
69 KOG0153 Predicted RNA-binding 98.8 1.9E-08 4.2E-13 103.8 10.2 156 189-386 137-302 (377)
70 smart00361 RRM_1 RNA recogniti 98.8 1.1E-08 2.4E-13 83.3 6.8 62 302-378 2-68 (70)
71 KOG0123 Polyadenylate-binding 98.8 2.3E-08 5E-13 106.3 9.9 111 248-387 45-155 (369)
72 KOG0148 Apoptosis-promoting RN 98.8 1.1E-08 2.4E-13 102.7 6.6 82 288-386 62-143 (321)
73 KOG0132 RNA polymerase II C-te 98.7 1.5E-08 3.2E-13 113.1 7.5 82 284-388 417-498 (894)
74 KOG0144 RNA-binding protein CU 98.7 2.1E-08 4.6E-13 105.8 7.4 78 278-372 24-101 (510)
75 KOG0147 Transcriptional coacti 98.7 1.9E-08 4.1E-13 108.9 5.5 79 291-386 281-359 (549)
76 KOG0145 RNA-binding protein EL 98.6 6.4E-08 1.4E-12 96.8 7.6 79 289-384 42-120 (360)
77 KOG4205 RNA-binding protein mu 98.6 2.7E-08 5.8E-13 103.3 4.1 153 202-388 20-179 (311)
78 KOG2590 RNA-binding protein LA 98.6 2.3E-08 4.9E-13 107.8 3.6 62 198-266 301-362 (448)
79 KOG0124 Polypyrimidine tract-b 98.6 4.6E-08 9.9E-13 101.5 5.1 77 288-381 113-189 (544)
80 KOG1924 RhoA GTPase effector D 98.5 3.5E-07 7.7E-12 102.3 10.5 13 97-109 589-601 (1102)
81 KOG0109 RNA-binding protein LA 98.5 7.2E-08 1.6E-12 97.8 4.4 75 287-386 77-151 (346)
82 KOG4206 Spliceosomal protein s 98.5 3.5E-07 7.5E-12 90.1 8.0 79 288-386 9-91 (221)
83 COG5193 LHP1 La protein, small 98.5 4.8E-08 1E-12 102.6 2.1 61 198-260 271-331 (438)
84 KOG1924 RhoA GTPase effector D 98.5 5.8E-07 1.3E-11 100.6 10.3 25 77-101 582-606 (1102)
85 KOG0123 Polyadenylate-binding 98.5 8.4E-08 1.8E-12 102.1 3.7 83 285-385 267-349 (369)
86 KOG0110 RNA-binding protein (R 98.4 4.5E-07 9.7E-12 100.8 8.2 80 290-383 517-596 (725)
87 KOG4212 RNA-binding protein hn 98.4 3.7E-07 8E-12 96.7 7.0 75 286-382 534-608 (608)
88 KOG0131 Splicing factor 3b, su 98.4 3.5E-07 7.5E-12 87.6 6.2 83 289-388 97-180 (203)
89 KOG0533 RRM motif-containing p 98.4 6.9E-07 1.5E-11 89.9 8.6 80 287-384 82-161 (243)
90 KOG4209 Splicing factor RNPS1, 98.3 1.1E-06 2.3E-11 88.1 7.8 86 282-385 95-180 (231)
91 KOG0110 RNA-binding protein (R 98.3 1.3E-06 2.7E-11 97.3 8.7 79 288-383 613-691 (725)
92 KOG4208 Nucleolar RNA-binding 98.3 1.4E-06 3E-11 85.0 7.7 81 288-385 49-130 (214)
93 KOG0109 RNA-binding protein LA 98.3 6.4E-07 1.4E-11 91.0 4.7 69 290-383 4-72 (346)
94 KOG0415 Predicted peptidyl pro 98.3 1.3E-06 2.8E-11 90.7 6.1 79 287-382 238-316 (479)
95 KOG4660 Protein Mei2, essentia 98.2 9.9E-07 2.2E-11 96.0 4.4 72 285-378 72-143 (549)
96 KOG0146 RNA-binding protein ET 98.1 3.3E-06 7.2E-11 85.0 5.5 83 284-383 281-363 (371)
97 KOG4661 Hsp27-ERE-TATA-binding 98.1 2.8E-05 6.1E-10 84.9 12.5 80 287-383 404-483 (940)
98 KOG0106 Alternative splicing f 98.0 5.7E-06 1.2E-10 81.9 4.7 62 290-376 3-64 (216)
99 KOG4454 RNA binding protein (R 98.0 2.8E-06 6E-11 83.6 2.1 78 288-384 9-86 (267)
100 KOG1548 Transcription elongati 98.0 2E-05 4.4E-10 81.9 7.9 83 282-382 128-218 (382)
101 KOG0124 Polypyrimidine tract-b 97.9 3E-05 6.5E-10 81.0 8.6 76 287-379 209-284 (544)
102 KOG0146 RNA-binding protein ET 97.9 9.9E-06 2.1E-10 81.7 4.8 70 285-372 16-85 (371)
103 PF08777 RRM_3: RNA binding mo 97.9 5.2E-05 1.1E-09 67.2 7.9 59 289-370 2-60 (105)
104 KOG4205 RNA-binding protein mu 97.8 2E-05 4.4E-10 82.1 5.4 63 287-366 5-67 (311)
105 KOG4206 Spliceosomal protein s 97.7 8.7E-05 1.9E-09 73.4 7.8 154 198-373 23-209 (221)
106 KOG1457 RNA binding protein (c 97.7 0.00012 2.6E-09 72.5 8.5 81 288-384 34-117 (284)
107 KOG4211 Splicing factor hnRNP- 97.7 9.2E-05 2E-09 80.0 8.2 74 287-378 102-175 (510)
108 KOG1995 Conserved Zn-finger pr 97.7 0.00016 3.4E-09 75.7 8.7 93 286-387 64-156 (351)
109 PF11608 Limkain-b1: Limkain b 97.5 0.00057 1.2E-08 58.4 8.6 67 289-382 3-74 (90)
110 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00023 5.1E-09 55.5 5.5 52 289-364 2-53 (53)
111 KOG0147 Transcriptional coacti 97.5 5.2E-05 1.1E-09 82.8 2.4 80 283-380 174-253 (549)
112 KOG4211 Splicing factor hnRNP- 97.5 0.00038 8.2E-09 75.4 8.8 59 288-366 10-68 (510)
113 KOG0151 Predicted splicing reg 97.4 0.00017 3.6E-09 80.8 5.6 102 267-382 143-254 (877)
114 KOG1457 RNA binding protein (c 97.4 0.00016 3.4E-09 71.7 3.9 63 288-371 210-272 (284)
115 KOG1190 Polypyrimidine tract-b 97.3 0.00059 1.3E-08 72.6 8.1 73 288-382 297-370 (492)
116 PF04059 RRM_2: RNA recognitio 97.3 0.0011 2.5E-08 58.1 8.0 66 289-371 2-69 (97)
117 KOG0106 Alternative splicing f 97.2 0.00017 3.6E-09 71.6 2.6 70 285-379 96-165 (216)
118 KOG2314 Translation initiation 96.9 0.002 4.4E-08 70.9 7.3 78 288-383 58-142 (698)
119 KOG4210 Nuclear localization s 96.8 0.002 4.4E-08 66.7 6.3 69 288-374 184-253 (285)
120 KOG4307 RNA binding protein RB 96.8 0.0025 5.5E-08 71.6 7.1 75 289-381 868-943 (944)
121 COG5175 MOT2 Transcriptional r 96.8 0.0034 7.4E-08 65.5 7.5 83 285-381 111-199 (480)
122 KOG0226 RNA-binding proteins [ 96.8 0.0016 3.4E-08 65.7 4.7 71 287-374 189-259 (290)
123 KOG0105 Alternative splicing f 96.7 0.011 2.5E-07 57.4 9.9 72 288-383 115-186 (241)
124 KOG4307 RNA binding protein RB 96.4 0.19 4E-06 57.2 18.3 60 288-365 434-494 (944)
125 KOG0120 Splicing factor U2AF, 96.1 0.0043 9.4E-08 68.4 3.6 80 287-383 288-367 (500)
126 KOG0129 Predicted RNA-binding 96.0 0.021 4.6E-07 62.6 8.2 70 285-369 256-328 (520)
127 KOG1548 Transcription elongati 96.0 0.074 1.6E-06 56.0 11.7 130 223-377 173-344 (382)
128 KOG1190 Polypyrimidine tract-b 95.9 0.0052 1.1E-07 65.6 3.1 60 287-369 27-86 (492)
129 PF10309 DUF2414: Protein of u 95.9 0.036 7.8E-07 44.9 7.0 56 287-367 4-62 (62)
130 KOG2202 U2 snRNP splicing fact 95.7 0.0068 1.5E-07 61.3 2.6 62 302-381 82-144 (260)
131 KOG0129 Predicted RNA-binding 95.6 0.073 1.6E-06 58.5 10.2 62 287-365 369-431 (520)
132 PF05172 Nup35_RRM: Nup53/35/4 95.5 0.03 6.5E-07 49.5 5.8 75 287-373 5-79 (100)
133 KOG0120 Splicing factor U2AF, 95.5 0.035 7.6E-07 61.5 7.4 59 303-375 424-482 (500)
134 PF15023 DUF4523: Protein of u 95.3 0.07 1.5E-06 50.1 7.6 79 285-388 83-165 (166)
135 KOG3671 Actin regulatory prote 95.3 0.14 3E-06 56.3 10.9 12 195-206 492-503 (569)
136 KOG3152 TBP-binding protein, a 95.2 0.012 2.6E-07 59.6 2.5 83 288-375 74-156 (278)
137 KOG1365 RNA-binding protein Fu 94.9 0.069 1.5E-06 56.9 7.1 59 289-366 162-225 (508)
138 PF08952 DUF1866: Domain of un 94.8 0.082 1.8E-06 49.7 6.7 74 288-387 27-109 (146)
139 KOG0128 RNA-binding protein SA 94.7 0.021 4.6E-07 65.7 3.2 79 288-384 736-814 (881)
140 KOG1456 Heterogeneous nuclear 94.6 0.66 1.4E-05 49.6 13.4 72 289-382 121-196 (494)
141 KOG1456 Heterogeneous nuclear 94.5 0.14 3E-06 54.5 8.3 74 287-382 286-360 (494)
142 KOG4849 mRNA cleavage factor I 94.3 0.078 1.7E-06 55.9 6.0 75 288-379 80-156 (498)
143 PF12901 SUZ-C: SUZ-C motif; 94.3 0.022 4.7E-07 40.8 1.3 15 516-530 20-34 (34)
144 KOG2416 Acinus (induces apopto 93.9 0.035 7.6E-07 61.8 2.6 65 287-375 443-508 (718)
145 PRK11634 ATP-dependent RNA hel 93.7 0.42 9E-06 54.8 10.9 36 347-383 526-561 (629)
146 PF09421 FRQ: Frequency clock 93.5 0.05 1.1E-06 63.9 3.1 53 224-276 471-524 (989)
147 KOG1365 RNA-binding protein Fu 93.3 0.094 2E-06 55.9 4.5 75 288-382 280-357 (508)
148 PF05918 API5: Apoptosis inhib 93.2 0.024 5.3E-07 63.6 0.0 12 195-206 239-250 (556)
149 PF07145 PAM2: Ataxin-2 C-term 93.1 0.058 1.3E-06 33.3 1.5 16 36-51 2-17 (18)
150 KOG1996 mRNA splicing factor [ 93.0 0.19 4.2E-06 52.0 6.0 58 302-375 300-357 (378)
151 KOG4676 Splicing factor, argin 92.9 0.12 2.5E-06 55.4 4.3 76 289-379 8-83 (479)
152 KOG4574 RNA-binding protein (c 92.6 0.072 1.6E-06 61.5 2.5 72 291-385 301-372 (1007)
153 KOG2068 MOT2 transcription fac 92.6 0.059 1.3E-06 56.5 1.7 79 286-378 75-156 (327)
154 PF08675 RNA_bind: RNA binding 92.5 0.45 9.8E-06 40.9 6.6 65 290-383 10-74 (87)
155 KOG0112 Large RNA-binding prot 92.4 0.034 7.4E-07 64.4 -0.3 79 286-382 370-448 (975)
156 KOG0128 RNA-binding protein SA 92.4 0.012 2.6E-07 67.6 -3.8 66 286-368 665-730 (881)
157 KOG0115 RNA-binding protein p5 91.3 0.25 5.5E-06 50.3 4.4 65 289-371 32-96 (275)
158 KOG1923 Rac1 GTPase effector F 91.1 0.79 1.7E-05 52.9 8.5 15 192-206 388-402 (830)
159 PF03467 Smg4_UPF3: Smg-4/UPF3 89.2 0.44 9.6E-06 46.1 4.1 70 287-371 6-79 (176)
160 PF07576 BRAP2: BRCA1-associat 89.2 2.8 6.2E-05 37.7 8.9 64 290-372 15-79 (110)
161 KOG1923 Rac1 GTPase effector F 89.0 1.7 3.7E-05 50.3 9.0 8 292-299 532-539 (830)
162 KOG0112 Large RNA-binding prot 88.9 0.48 1E-05 55.4 4.7 76 286-384 453-530 (975)
163 KOG2135 Proteins containing th 85.2 0.44 9.5E-06 52.2 1.6 75 286-384 370-445 (526)
164 KOG0921 Dosage compensation co 84.9 2.5 5.5E-05 50.0 7.5 8 289-296 1049-1056(1282)
165 KOG1819 FYVE finger-containing 84.4 0.51 1.1E-05 51.9 1.7 10 304-313 741-750 (990)
166 KOG2318 Uncharacterized conser 80.8 4.4 9.6E-05 45.7 7.2 94 287-381 173-302 (650)
167 PF04847 Calcipressin: Calcipr 79.7 2.7 6E-05 41.1 4.7 59 301-382 8-68 (184)
168 KOG0804 Cytoplasmic Zn-finger 79.4 4.8 0.0001 44.2 6.7 68 288-374 74-142 (493)
169 COG5178 PRP8 U5 snRNP spliceos 77.8 1.6 3.5E-05 52.4 2.8 15 249-263 222-236 (2365)
170 KOG2193 IGF-II mRNA-binding pr 77.4 2.1 4.6E-05 46.5 3.4 59 290-371 3-61 (584)
171 PF01885 PTS_2-RNA: RNA 2'-pho 77.0 1.7 3.7E-05 42.4 2.4 52 225-276 26-82 (186)
172 KOG0921 Dosage compensation co 76.9 6.9 0.00015 46.6 7.4 11 195-205 951-961 (1282)
173 KOG4676 Splicing factor, argin 76.3 0.6 1.3E-05 50.1 -1.0 64 283-368 147-210 (479)
174 KOG4210 Nuclear localization s 75.7 1.6 3.5E-05 45.4 1.9 80 287-383 87-166 (285)
175 KOG4285 Mitotic phosphoprotein 72.8 14 0.00031 38.8 7.8 74 288-388 197-270 (350)
176 PRK00819 RNA 2'-phosphotransfe 72.4 2.8 6E-05 40.9 2.5 82 224-313 26-113 (179)
177 KOG1830 Wiskott Aldrich syndro 70.7 60 0.0013 35.8 12.1 18 189-206 447-464 (518)
178 COG0724 RNA-binding proteins ( 70.6 12 0.00026 35.5 6.5 37 285-321 222-258 (306)
179 PRK15319 AIDA autotransporter- 69.9 8.1 0.00017 49.1 6.2 8 234-241 1809-1816(2039)
180 KOG2278 RNA:NAD 2'-phosphotran 69.0 3.3 7.1E-05 40.3 2.1 39 224-262 27-65 (207)
181 PF03276 Gag_spuma: Spumavirus 68.2 22 0.00048 40.1 8.5 11 107-117 258-268 (582)
182 PF11767 SET_assoc: Histone ly 67.8 13 0.00027 30.6 5.0 47 299-371 11-57 (66)
183 KOG4849 mRNA cleavage factor I 66.1 1E+02 0.0022 33.4 12.4 11 144-154 342-352 (498)
184 KOG2253 U1 snRNP complex, subu 64.5 4.4 9.5E-05 46.3 2.3 68 288-381 40-107 (668)
185 PF03880 DbpA: DbpA RNA bindin 63.6 29 0.00063 28.5 6.5 58 299-382 12-74 (74)
186 KOG4660 Protein Mei2, essentia 60.7 13 0.00027 42.0 4.9 79 289-375 362-458 (549)
187 KOG2891 Surface glycoprotein [ 60.7 3.3 7.1E-05 42.9 0.5 32 289-320 150-193 (445)
188 PTZ00315 2'-phosphotransferase 60.3 9.6 0.00021 43.5 4.1 53 224-276 398-456 (582)
189 KOG1819 FYVE finger-containing 57.2 5.2 0.00011 44.4 1.3 11 131-141 572-582 (990)
190 PF03276 Gag_spuma: Spumavirus 56.2 47 0.001 37.6 8.4 12 194-205 302-313 (582)
191 PRK10590 ATP-dependent RNA hel 53.2 29 0.00062 38.1 6.3 20 194-213 84-103 (456)
192 PTZ00070 40S ribosomal protein 48.4 14 0.0003 38.0 2.6 9 521-529 112-120 (257)
193 KOG1925 Rac1 GTPase effector F 48.0 27 0.00058 39.3 4.8 12 289-300 520-531 (817)
194 PRK14548 50S ribosomal protein 46.8 55 0.0012 28.2 5.6 57 291-367 23-81 (84)
195 KOG3172 Small nuclear ribonucl 44.6 17 0.00038 32.5 2.3 8 313-320 15-22 (119)
196 KOG3423 Transcription initiati 44.6 47 0.001 32.2 5.3 93 193-313 68-166 (176)
197 KOG0559 Dihydrolipoamide succi 44.3 84 0.0018 34.2 7.7 38 216-269 273-310 (457)
198 PF12782 Innate_immun: Inverte 42.5 19 0.00041 36.1 2.5 6 147-152 216-221 (311)
199 TIGR03636 L23_arch archaeal ri 42.5 77 0.0017 26.8 5.8 57 291-367 16-74 (77)
200 cd04904 ACT_AAAH ACT domain of 42.2 1.9E+02 0.0041 23.5 8.2 52 301-370 13-66 (74)
201 PF03154 Atrophin-1: Atrophin- 41.1 7.4E+02 0.016 30.4 15.3 17 349-365 570-586 (982)
202 PF03468 XS: XS domain; Inter 40.4 55 0.0012 29.7 5.0 57 289-365 9-75 (116)
203 KOG2675 Adenylate cyclase-asso 39.7 27 0.00058 38.6 3.2 13 205-217 336-348 (480)
204 PF10567 Nab6_mRNP_bdg: RNA-re 38.4 69 0.0015 33.8 5.8 69 286-364 13-81 (309)
205 PF00403 HMA: Heavy-metal-asso 38.2 1.4E+02 0.003 22.9 6.4 54 290-366 1-58 (62)
206 KOG1785 Tyrosine kinase negati 36.4 85 0.0018 34.5 6.3 19 34-52 502-520 (563)
207 cd04908 ACT_Bt0572_1 N-termina 34.6 2.2E+02 0.0048 22.2 8.4 44 301-365 14-58 (66)
208 PF00398 RrnaAD: Ribosomal RNA 34.5 23 0.0005 35.9 1.8 109 193-318 14-129 (262)
209 PF07292 NID: Nmi/IFP 35 domai 33.4 30 0.00065 30.1 2.0 25 285-309 49-73 (88)
210 KOG2135 Proteins containing th 32.8 51 0.0011 36.8 4.1 52 300-375 209-260 (526)
211 KOG4483 Uncharacterized conser 32.2 1.1E+02 0.0023 33.8 6.2 53 289-365 392-445 (528)
212 KOG4410 5-formyltetrahydrofola 31.9 72 0.0016 33.6 4.7 57 289-368 331-395 (396)
213 PF08544 GHMP_kinases_C: GHMP 31.4 1.7E+02 0.0037 23.5 6.3 45 302-368 36-80 (85)
214 cd04880 ACT_AAAH-PDT-like ACT 30.8 2.8E+02 0.006 22.1 7.5 52 301-370 12-67 (75)
215 PRK06545 prephenate dehydrogen 30.5 1.2E+02 0.0026 32.3 6.5 62 289-369 291-353 (359)
216 PF14893 PNMA: PNMA 29.5 40 0.00086 36.1 2.6 24 288-311 18-41 (331)
217 PF02714 DUF221: Domain of unk 28.5 63 0.0014 33.4 3.9 30 350-381 1-30 (325)
218 KOG1855 Predicted RNA-binding 27.4 1.2E+02 0.0026 33.7 5.6 28 23-50 18-45 (484)
219 KOG0116 RasGAP SH3 binding pro 27.2 62 0.0013 35.7 3.6 11 357-367 302-312 (419)
220 COG2608 CopZ Copper chaperone 27.2 2.8E+02 0.0062 22.5 6.7 45 289-356 4-48 (71)
221 COG4907 Predicted membrane pro 25.2 57 0.0012 36.4 2.8 17 226-242 325-341 (595)
222 COG3254 Uncharacterized conser 24.8 2.6E+02 0.0057 25.2 6.4 44 302-365 26-69 (105)
223 KOG2391 Vacuolar sorting prote 23.5 1.3E+02 0.0029 32.3 5.0 45 53-97 138-182 (365)
224 cd04931 ACT_PAH ACT domain of 22.8 4.8E+02 0.01 22.5 7.6 51 301-369 27-80 (90)
225 KOG2252 CCAAT displacement pro 22.7 87 0.0019 35.6 3.7 98 199-311 329-441 (558)
226 PRK14950 DNA polymerase III su 22.4 4.2E+02 0.0091 30.4 9.3 7 252-258 524-530 (585)
227 KOG1925 Rac1 GTPase effector F 22.2 1.6E+02 0.0034 33.5 5.4 9 78-86 250-258 (817)
228 COG4009 Uncharacterized protei 22.2 1.3E+02 0.0028 25.9 3.8 23 292-314 52-74 (88)
229 PTZ00191 60S ribosomal protein 21.1 2.2E+02 0.0048 27.1 5.5 55 291-365 84-140 (145)
230 KOG2945 Predicted RNA-binding 20.5 73 0.0016 34.5 2.5 7 350-356 290-296 (365)
231 PRK09752 adhesin; Provisional 20.1 94 0.002 38.5 3.5 31 52-82 919-949 (1250)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=1.2e-68 Score=551.71 Aligned_cols=373 Identities=37% Similarity=0.547 Sum_probs=277.8
Q ss_pred CCCCCCCCCCCCCCcccccc-ccccccCcCCCcccccccc-------cCCCCCCChHHHHHHHhhhhhhccCCCcCCChH
Q 009228 148 HHRHQNHHHNNNNSHHQNNQ-YEDQQEGEVPGVKDKKEKK-------DHQHGGLNDESIQKVLNQVEYYFSDLNLATTDH 219 (539)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~-------~~s~~~~s~e~~~kI~kQvEyYFSD~NL~~D~f 219 (539)
-+.++.+++.++|+|..+.| ...+..+....+...+..+ ..++..+++|++.||++||||||||.||.+|+|
T Consensus 83 ~n~~~~~~~~~~R~~~~~~q~~~v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~f 162 (484)
T KOG1855|consen 83 GNSPSLSDKRPVRGHGETKQEGGVEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAF 162 (484)
T ss_pred CCCcccccceeccCCcchhhccCCCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHH
Confidence 36789999999999999887 5555444444444444444 445889999999999999999999999999999
Q ss_pred HHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecccccccCCCCcchhhhhccceeEEEecCCCC
Q 009228 220 LIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPED 299 (539)
Q Consensus 220 L~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d 299 (539)
|++.|++|.+|||+|.+|++|+|||+||.||.+|++||+.|.+|+|++||+||||..||++.+.+++++|||+|+|||.|
T Consensus 163 LlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~D 242 (484)
T KOG1855|consen 163 LLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLD 242 (484)
T ss_pred HHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 009228 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (539)
Q Consensus 300 ~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV 379 (539)
.+.|+|.+||+.||.|+.||||.|. .+|.+.|.......+...|-||||||++.+.|.||.+.||.+..|+.||+|
T Consensus 243 h~~enl~kiFg~~G~IksIRIckPg----aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkv 318 (484)
T KOG1855|consen 243 HSYENLSKIFGTVGSIKSIRICKPG----AIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKV 318 (484)
T ss_pred hHHHHHHHHhhcccceeeeeecCCC----CCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchh
Confidence 9999999999999999999999985 356677766665556677999999999999999999999999999999999
Q ss_pred EEeeecCCCCcccCC---CCCCCCCCcCccccccccccccCCCCCCCCcccccccCCCC-CCcCCCcccCCCCCCCCCCC
Q 009228 380 RLMLRRGSKPAQVKG---KKGPEGEWQCEEEDTSTSEQHLNEKQPDDSSQQSDVQSHDH-TGEEHNNEKEGGQRKGRNKG 455 (539)
Q Consensus 380 ~l~~~~~~k~~~~k~---rkg~~~~~~~~e~~~~~s~~~~~e~~~e~~~~~~d~~~~~~-~~~~~~g~~~gG~grGrGrG 455 (539)
+++.++..|-...+. +.|...++-...++....++.+.+.+..+ ++.|..+- .+.++++...-++.+|+.+|
T Consensus 319 kLl~k~a~K~~~~~~~R~~~g~~~d~E~~~~~st~~e~np~~~q~~~----~~~H~~~~~l~~d~Gn~~~~~~~~g~~~G 394 (484)
T KOG1855|consen 319 KLLGKKAPKIQIAAPVRSRGGSFSDDETVPDDSTKLERNPSDPQPSY----PRLHANENQLDQDRGNQNQEGGPWGFFKG 394 (484)
T ss_pred hhhhccCcccccccccccccccccCcccCcccccccccCCCCcCCCc----cccccccccCCCCCCCcccccCCCCcccc
Confidence 999999887533221 12222122122223333332333333221 23333222 23333444433455565566
Q ss_pred CCCCCCCCCCCCCcCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCcccc
Q 009228 456 RGKGRGRNDRGQYHNNS-HHNNSHHNSNHNNHHNNRGHHVGTPPSNNMVNN-------EQPMIGKQPPGPRMPDGTRGFA 527 (539)
Q Consensus 456 RGrGrGR~~rG~~~~~~-~~n~~~~~~~~~~~~~~~g~~~gt~~~~~~~~~-------~~~~~~~~ppgprmpdgtrgf~ 527 (539)
|++|||| ++.+.|. ..|++.++- +|.++..|+++++...++ .+.+++.++||||||||||||+
T Consensus 395 r~kG~gR---~~p~an~~~~n~~ss~~------~Gn~~~~g~ss~~s~ps~sP~~~~k~~~~~~~q~~gPrmPdgtrGfs 465 (484)
T KOG1855|consen 395 RRKGRGR---STPSANTAQANGHSSNG------GGNGMVHGISSLSSHPSYSPEVNPKRPRRASNQSPGPRMPDGTRGFS 465 (484)
T ss_pred cccccCC---CCcchhhhhccCccCCC------CCCcccccccccccCCCCCcccccccccccccCCCCCCCCCCcCCcc
Confidence 6777777 5443332 222222221 333333444443322222 2257788999999999999999
Q ss_pred ccCC----CCCccc
Q 009228 528 MGRG----KPVAVN 537 (539)
Q Consensus 528 ~grg----~p~~~~ 537 (539)
|||| ||.++.
T Consensus 466 mGrg~~~~~P~~s~ 479 (484)
T KOG1855|consen 466 MGRGDFAQKPDTSQ 479 (484)
T ss_pred cccccCCCCCcccc
Confidence 9999 776553
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.93 E-value=8.4e-27 Score=196.20 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=78.0
Q ss_pred hHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
.+++.+|++||||||||+||++|+||+++|.++.||||||++|++|+|||+|+.|.++|++||+.|+.|+|++||++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 57899999999999999999999999999998999999999999999999999999999999999999999999999998
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=1.6e-26 Score=192.50 Aligned_cols=76 Identities=55% Similarity=0.873 Sum_probs=74.6
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||.+|+||+++|.+++||||+|++|++|+|||+|+.|.++|++||+.|+.|+|++||++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=4.8e-26 Score=188.00 Aligned_cols=74 Identities=34% Similarity=0.493 Sum_probs=70.9
Q ss_pred HHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecccccc
Q 009228 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (539)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVR 273 (539)
+++|++||||||||+||.+|+||+++| +.||||||++|++|+|||+|+.|.++|++||+.|++|+|++||++||
T Consensus 1 ~e~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVR 74 (75)
T cd08035 1 RECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVR 74 (75)
T ss_pred ChHHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccC
Confidence 368999999999999999999999985 67999999999999999999999999999999999999999999997
No 5
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=1.6e-25 Score=186.25 Aligned_cols=75 Identities=40% Similarity=0.650 Sum_probs=72.4
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||.+|.||+++|.+++||||||++|++|+|||+|+.+ ++|++||+.|+.|+|++||++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 589999999999999999999999999999999999999999999999865 999999999999999999999998
No 6
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=1.3e-25 Score=184.42 Aligned_cols=73 Identities=33% Similarity=0.499 Sum_probs=70.3
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIK 273 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVR 273 (539)
+.|++||||||||.||.+|.||+++| +.||||||++|++|+|||+|+.|.++|++||++|++|+|+++|++||
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVR 74 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVR 74 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccC
Confidence 57999999999999999999999996 67999999999999999999999999999999999999999999997
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.91 E-value=2.1e-25 Score=187.39 Aligned_cols=80 Identities=49% Similarity=0.745 Sum_probs=77.1
Q ss_pred hHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++++++|++||||||||+||.+|.||+++|.++ +|||||++|++|+|||.|+.|.++|++||+.|..|+|++||++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 478899999999999999999999999999887 9999999999999999999999999999999999999999999998
Q ss_pred C
Q 009228 275 Q 275 (539)
Q Consensus 275 ~ 275 (539)
.
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 4
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.91 E-value=2.8e-25 Score=187.19 Aligned_cols=79 Identities=38% Similarity=0.668 Sum_probs=76.0
Q ss_pred hHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCC--ceEEeeccccc
Q 009228 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKKI 272 (539)
Q Consensus 195 ~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~--~LeVsedg~kV 272 (539)
+++..+|++||||||||+||.+|+||+++|..+ +|||+|++|++|+|||.|+.|.++|++||+.|+ +|||++||++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 578999999999999999999999999998766 999999999999999999999999999999999 99999999999
Q ss_pred cc
Q 009228 273 KR 274 (539)
Q Consensus 273 RR 274 (539)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 98
No 9
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=3.9e-25 Score=188.91 Aligned_cols=77 Identities=42% Similarity=0.708 Sum_probs=73.5
Q ss_pred HHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcC------------HHHHHHhhhcCCceEE
Q 009228 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------------HSHLASVLRKSSKLVV 265 (539)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d------------~~~V~~ALr~S~~LeV 265 (539)
.++|++||||||||.||.+|+||+++|.+++||||+|++|++|+|||+|+.+ .+.|++||+.|+.|+|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5799999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred eeccccccc
Q 009228 266 SEDGKKIKR 274 (539)
Q Consensus 266 sedg~kVRR 274 (539)
++||++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 10
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=1.8e-24 Score=179.41 Aligned_cols=74 Identities=38% Similarity=0.624 Sum_probs=70.7
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||.+|.||+++| +.||||+|++|++|+|||+|+.|.++|++||+.|+.|+|++||++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999986 578999999999999999999999999999999999999999999973
No 11
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.88 E-value=1.3e-23 Score=172.95 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.4
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||.||++|.||+++| ++||||||++|++|+|||+|+.|.++|++||+.|+.|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 58999999999999999999999985 679999999999999999999999999999999999999977 5654
No 12
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.88 E-value=2.4e-23 Score=171.34 Aligned_cols=72 Identities=32% Similarity=0.588 Sum_probs=67.2
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||.+|.||+++| +.+|||||++|++|+|||+|+.|.++|++||+.|..|||+++ +|||
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~--~~r~ 73 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQ--KIRR 73 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCC--cccC
Confidence 68999999999999999999999985 679999999999999999999999999999999999999977 4554
No 13
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.88 E-value=2.6e-23 Score=171.59 Aligned_cols=72 Identities=33% Similarity=0.601 Sum_probs=67.9
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||.+|.||+++| +.+|||||++|++|+|||+|+.|.++|.+||+.|+.|+|++ .+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 68999999999999999999999985 67999999999999999999999999999999999999998 46765
No 14
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.87 E-value=4.1e-23 Score=171.62 Aligned_cols=74 Identities=43% Similarity=0.723 Sum_probs=71.8
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccccccc
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||.+|.||+++| +.+|||+|++|++|+|||+|+.|.+.|++||+.|..|+|++++++|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 58999999999999999999999997 889999999999999999999999999999999999999999999987
No 15
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.87 E-value=4.5e-22 Score=211.83 Aligned_cols=151 Identities=28% Similarity=0.407 Sum_probs=131.8
Q ss_pred cCCCCCCChHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEe
Q 009228 187 DHQHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVS 266 (539)
Q Consensus 187 ~~s~~~~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVs 266 (539)
......++.++++.|.+|||||||-+||..|.||+.+ ||.|.||||.+||.|.+|++|+.|+++|+++||.|..|+|+
T Consensus 86 ~~~~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQ--MDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvD 163 (684)
T KOG2591|consen 86 EPPSPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQ--MDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVD 163 (684)
T ss_pred CCCCCccchhHHHHHHHHHHHhhccccccchhhhhhh--cccccccchhhhccchhhhhhccchHHHHHHHhcCCCceec
Confidence 3455677889999999999999999999999999987 68899999999999999999999999999999999999999
Q ss_pred ecccccccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhhh--cCCeeEEEEeCCCCCCCCCCCCCccccccCccc
Q 009228 267 EDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLF 344 (539)
Q Consensus 267 edg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~--fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~ 344 (539)
++|.|||-.. +.|+|+++.|++.+-+|+++.||+. |=++.++.+
T Consensus 164 ekgekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~iscef------------------------ 209 (684)
T KOG2591|consen 164 EKGEKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEF------------------------ 209 (684)
T ss_pred cCccccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeee------------------------
Confidence 9999998654 4578899999999999999999976 545555544
Q ss_pred CccceEEEEeCCHHHHHHHHHHHcCCCCC
Q 009228 345 SNKLHAFVEYESVELAEKAIAELNDEGNW 373 (539)
Q Consensus 345 ~~KG~AFVEFet~E~AekAv~~LN~~~~~ 373 (539)
+....|||+|++.+||++|.+.|..+...
T Consensus 210 a~N~nWyITfesd~DAQqAykylreevk~ 238 (684)
T KOG2591|consen 210 AHNDNWYITFESDTDAQQAYKYLREEVKT 238 (684)
T ss_pred eecCceEEEeecchhHHHHHHHHHHHHHh
Confidence 33445999999999999999988765433
No 16
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.85 E-value=8.8e-22 Score=185.11 Aligned_cols=154 Identities=27% Similarity=0.348 Sum_probs=130.1
Q ss_pred ChHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCC--ceEEeecccc
Q 009228 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKK 271 (539)
Q Consensus 194 s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~--~LeVsedg~k 271 (539)
..++.++|+.||||||+|.||++|+||+++|-+..+|||||.+++.|+|+..|++|...|++||++|. ++++|+|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 56788899999999999999999999999998888999999999999999999999999999999986 6899999999
Q ss_pred cccC--CCCcch---hhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCc
Q 009228 272 IKRQ--NPLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (539)
Q Consensus 272 VRR~--~Pl~e~---~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~ 346 (539)
+||. .||++. ..+.+..|+||.+ +.+...++|..+-+ |++.+|.+++-.. .....
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~----------------k~~~f 149 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN----------------KAHPF 149 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC----------------CCCCC
Confidence 9997 467653 3456788999999 56666677777766 8999999854211 11123
Q ss_pred cceEEEEeCCHHHHHHHHHHH
Q 009228 347 KLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 347 KG~AFVEFet~E~AekAv~~L 367 (539)
+|..||+|.+.+.|..+++.-
T Consensus 150 kGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 150 KGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCceEEEeecHHHHHhhhhhh
Confidence 889999999999999888743
No 17
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.81 E-value=5.5e-21 Score=152.87 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.3
Q ss_pred HHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhh-cCHHHHHHhhhcC
Q 009228 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAII-SSHSHLASVLRKS 260 (539)
Q Consensus 201 I~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt-~d~~~V~~ALr~S 260 (539)
|++||||||||+||.+|+||+++|.+++||||||++|++|+|||+|+ .|.++|.+||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 78999999999999999999999999899999999999999999999 8999999999986
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=5.2e-16 Score=163.02 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=66.9
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||.|||.++|+++|+++|++||+|+.|+|++++.++ ..||||||+|++.|+|++||
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg-----------------~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTG-----------------TPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 3456789999999999999999999999999999997654221 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009228 365 AELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~ 382 (539)
+.||+..+.+....|.+.
T Consensus 253 ~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVR 270 (346)
T ss_pred HHhCCCccCCCceeEEEE
Confidence 999998776654444443
No 19
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.7e-16 Score=145.08 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=68.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|++||+|++|+|+.+..++ ..||||||+|++.|+|++||+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG-----------------RSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999999999997664321 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.++.|+|.+..
T Consensus 96 lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 96 MDGKELNGRHIRVNPAN 112 (144)
T ss_pred cCCCEECCEEEEEEeCC
Confidence 99998877777776654
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=1.9e-14 Score=159.54 Aligned_cols=77 Identities=30% Similarity=0.337 Sum_probs=68.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhc--CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~f--G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..++|||+||+.++++++|+++|++| |+|++|+++ ++||||+|++.|+|++||
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------------------------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------------------------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------------------------cCeEEEEeCCHHHHHHHH
Confidence 35799999999999999999999999 999999873 568999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecCCC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~~k 388 (539)
+.||+..++++.|+|.++.....+
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999988888888654433
No 21
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.3e-14 Score=151.01 Aligned_cols=163 Identities=26% Similarity=0.314 Sum_probs=134.1
Q ss_pred ccCCCCCCChHHHHH---------------HHhhhhhhcc-----CCCcCCChHHHHhhccC--CCCceecccccchhhH
Q 009228 186 KDHQHGGLNDESIQK---------------VLNQVEYYFS-----DLNLATTDHLIRFILKD--PEGYVPISTVASFKKI 243 (539)
Q Consensus 186 ~~~s~~~~s~e~~~k---------------I~kQvEyYFS-----D~NL~~D~fL~~~i~kd--~dGyVpI~~IasFkKm 243 (539)
......+++++.+.| +.+|+||||| |.|+.+|+||+....++ .+|||+|.++++|++|
T Consensus 45 t~~~~eE~~~~sksKk~d~~ps~l~~~~kw~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~ 124 (438)
T COG5193 45 TVIPVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRM 124 (438)
T ss_pred CCcchhhccchhhhcccccCccccccCccccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccc
Confidence 344566678888888 9999999999 99999999999865443 4899999999999999
Q ss_pred HHhhcCHHHHHHhhhcC---CceEEeecccccccCCCCcchhhh--hccceeEEEecCCCCCCHH--------HHHHHhh
Q 009228 244 KAIISSHSHLASVLRKS---SKLVVSEDGKKIKRQNPLTESDLE--ELQSRIVVAENLPEDHCHQ--------NLMKIFS 310 (539)
Q Consensus 244 K~Lt~d~~~V~~ALr~S---~~LeVsedg~kVRR~~Pl~e~~~~--~~~~rTVyV~nLP~d~t~e--------~L~e~Fs 310 (539)
+.+....+.|..||++| .+++++.+|.+++|..++.....+ ....|.+|+.+|....+.+ +|+..|.
T Consensus 125 k~~gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p 204 (438)
T COG5193 125 KNSGSPVSAVSGALRKSLDARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFP 204 (438)
T ss_pred cccCCchhhhhhhhhcCcccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCC
Confidence 99999999999999999 789999999999998776544333 4556899999998765444 9999999
Q ss_pred h--cCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 311 A--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 311 ~--fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
. .+.+..|+++++- +. .. ++|..||+|...+.|++++.
T Consensus 205 ~h~h~~~~~i~~rrd~----------~n-----kn--~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 205 PHYHAPPSQIRNRRDW----------LN-----KN--FRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred CcccCChhhccchhhh----------hh-----cc--ccCcccccccChHHHHHHhc
Confidence 9 7888888886542 11 12 37889999999999999984
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.47 E-value=3.7e-13 Score=141.56 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=70.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||.|||.++|+++|+++|+.||+|+.|+|+.+..++ .+||||||+|+++|+|++||+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg-----------------~srGyaFVeF~~~e~A~~Ai~ 167 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTG-----------------YSFGYAFVDFGSEADSQRAIK 167 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------ccCcEEEEEEccHHHHHHHHH
Confidence 356899999999999999999999999999999998764321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
+||+..+..+.|+|.+..
T Consensus 168 ~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 168 NLNGITVRNKRLKVSYAR 185 (346)
T ss_pred HcCCCccCCceeeeeccc
Confidence 999999888888887653
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=3.9e-13 Score=139.41 Aligned_cols=81 Identities=22% Similarity=0.225 Sum_probs=71.5
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.++|||+|||.++++++|+++|++||.|++|+|+++..++ ..||||||+|++.|+|.+||+.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~-----------------~skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTN-----------------QCKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCC-----------------CccceEEEEECCHHHHHHHHHHh
Confidence 3479999999999999999999999999999998875322 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeec
Q 009228 368 NDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~~ 385 (539)
|+..++++.|+|.+...+
T Consensus 332 nG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 332 NGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred CCCEECCeEEEEEEccCC
Confidence 999999988888887543
No 24
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.3e-12 Score=118.08 Aligned_cols=85 Identities=22% Similarity=0.186 Sum_probs=73.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+++||||+||.+-+++|.|-++|++||+|+.|-|-.++. .| ..-|||||||-+.++|+.||+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------kk------tpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------KK------TPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------Cc------CccceEEEEEecchhHHHHHH
Confidence 4578999999999999999999999999999999966532 22 137899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~~ 387 (539)
.+|+..+..+.|+|.+-.....
T Consensus 97 yisgtrLddr~ir~D~D~GF~e 118 (153)
T KOG0121|consen 97 YISGTRLDDRPIRIDWDAGFVE 118 (153)
T ss_pred HhccCcccccceeeeccccchh
Confidence 9999999999999888665444
No 25
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.39 E-value=6.9e-13 Score=105.07 Aligned_cols=68 Identities=37% Similarity=0.419 Sum_probs=58.3
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCC
Q 009228 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~ 370 (539)
|||+|||.++|+++|+++|+.||.|..+.|.... . ...+++|||+|++.++|++|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~-----------------~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-S-----------------GKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-T-----------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-c-----------------ccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999997531 0 113889999999999999999999997
Q ss_pred CCCCCc
Q 009228 371 GNWRSG 376 (539)
Q Consensus 371 ~~~~~g 376 (539)
.+.++.
T Consensus 63 ~~~~~~ 68 (70)
T PF00076_consen 63 KINGRK 68 (70)
T ss_dssp EETTEE
T ss_pred EECccC
Confidence 755543
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.38 E-value=1.2e-12 Score=135.77 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=69.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
..+|||+|||.++|+++|+++|+.||+|+.|+|++++.++ .++|||||+|++.|+|++||+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g-----------------~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTG-----------------QSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCC-----------------ccceEEEEEECcHHHHHHHHhhc
Confidence 4699999999999999999999999999999998764321 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
|+..+.++.|+|.+..
T Consensus 66 ~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 66 NGLRLQNKTIKVSYAR 81 (352)
T ss_pred ccEEECCeeEEEEeec
Confidence 9999888878777654
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.33 E-value=5.7e-12 Score=139.63 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=71.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+||+.++|+++|+++|+.||+|+.|+|+.+.+ + ..||||||+|++.|+|++||+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~-----------g-------~~~g~gfV~f~~~~~A~~A~~ 344 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK-----------G-------VSRGFGFVCFSNPEEANRAVT 344 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CcCCeEEEEeCCHHHHHHHHH
Confidence 3567899999999999999999999999999999986521 1 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009228 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~ 385 (539)
+||+..+.++.|+|.++..+
T Consensus 345 ~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 345 EMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HhcCCeeCCceeEEEeccCc
Confidence 99999988888988887643
No 28
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.33 E-value=4.7e-12 Score=127.46 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=67.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|+.||+|++|+|+.++. .+|||||+|++.++|++||.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~All- 61 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALL- 61 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHH-
Confidence 357999999999999999999999999999999975421 26799999999999999996
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..++++.|+|....
T Consensus 62 LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 62 LSGATIVDQSVTITPAE 78 (260)
T ss_pred hcCCeeCCceEEEEecc
Confidence 99999988888877754
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=6.9e-12 Score=136.67 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=69.5
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.++|||+|||.++|+++|+++|+.||.|+.|.|+.+..++ .++|||||+|++.++|++||+.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-----------------~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG-----------------LSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHHHc
Confidence 5799999999999999999999999999999998653211 24899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
|+..++++.|+|.++.
T Consensus 358 ~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 358 NGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEECCeEEEEEECc
Confidence 9999988888887764
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.31 E-value=1.8e-11 Score=136.50 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=68.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||+.++++++|+++|+.||+|++|+|.++..++ ..||||||+|++.++|.+||+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg-----------------ksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR-----------------GHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC-----------------CcCCeEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999999999997653211 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|....
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99998877777776544
No 31
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5.7e-12 Score=119.18 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=67.0
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.+.|||.||+.+++..||+.+|.+||.|.+|+|.+. .-|||||||++..||+.|+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----------------------PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----------------------CCCceEEeccCcccHHHHHhhc
Confidence 568999999999999999999999999999999431 2689999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009228 368 NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~ 384 (539)
++..+.+.-++|++-..
T Consensus 68 DG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTG 84 (195)
T ss_pred CCccccCceEEEEeecC
Confidence 99998887788877654
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.3e-11 Score=117.59 Aligned_cols=75 Identities=28% Similarity=0.314 Sum_probs=61.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.+++|||.|||.++-+.+|++||.+||.|..|.+..+. ..-.|||||||+.-+|+.||..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--------------------g~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--------------------GPPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--------------------CCCCeeEEEecCccchhhhhhc
Confidence 46899999999999999999999999999999984321 1256899999999999999998
Q ss_pred HcCCCCCCCceEEEE
Q 009228 367 LNDEGNWRSGLRVRL 381 (539)
Q Consensus 367 LN~~~~~~~glrV~l 381 (539)
-++-.+.+--|+|++
T Consensus 65 RdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 65 RDGYDYDGCRLRVEF 79 (241)
T ss_pred ccccccCcceEEEEe
Confidence 777665444444444
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.6e-11 Score=124.16 Aligned_cols=86 Identities=22% Similarity=0.216 Sum_probs=73.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
-.-+||||.-|++++++.+|++.|++||.|+.|+|++++.+++ +||||||||+++-++..|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgk-----------------skGYAFIeye~erdm~~AYK 161 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGK-----------------SKGYAFIEYEHERDMKAAYK 161 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCC-----------------ccceEEEEeccHHHHHHHHH
Confidence 3458999999999999999999999999999999999865433 39999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCCC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~~k 388 (539)
...+..+.++-|-|.+-..+.-|
T Consensus 162 ~adG~~Idgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 162 DADGIKIDGRRILVDVERGRTVK 184 (335)
T ss_pred hccCceecCcEEEEEeccccccc
Confidence 99999988777777765544433
No 34
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.4e-11 Score=110.86 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=76.2
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
..+...+|||.++.+++|+++|.+.|..||+|++|.+..++ |++.. ||||+|||++.++|++|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR----------RtGy~-------KGYaLvEYet~keAq~A 130 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR----------RTGYV-------KGYALVEYETLKEAQAA 130 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccc----------ccccc-------cceeeeehHhHHHHHHH
Confidence 45567899999999999999999999999999999997654 43332 99999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeecCC
Q 009228 364 IAELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~~~~ 387 (539)
++.||+..+.+..+.|.+......
T Consensus 131 ~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 131 IDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred HHhccchhhhCCceeEEEEEecCC
Confidence 999999999999999999875544
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.24 E-value=2.3e-11 Score=131.03 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=69.5
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.++|||+||+.++|+++|+++|+.||.|..|+|+++...+ ..+|||||+|.+.++|++||+.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g-----------------~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETG-----------------RSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHHhc
Confidence 5899999999999999999999999999999997653211 23899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
|+..+.++.|+|.++.
T Consensus 249 ~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCcEECCEEEEEEEcc
Confidence 9988888878887765
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.8e-11 Score=127.67 Aligned_cols=171 Identities=25% Similarity=0.287 Sum_probs=120.0
Q ss_pred CCChHHHHHHHhhhhhh-----------ccCCC-------cC----CChHHHHhhccCCCCceecccccchh-hHHHh--
Q 009228 192 GLNDESIQKVLNQVEYY-----------FSDLN-------LA----TTDHLIRFILKDPEGYVPISTVASFK-KIKAI-- 246 (539)
Q Consensus 192 ~~s~e~~~kI~kQvEyY-----------FSD~N-------L~----~D~fL~~~i~kd~dGyVpI~~IasFk-KmK~L-- 246 (539)
..+.|..++.+++|.-| .|-.| ++ +|.+| +.|++-.+|-|.|.+..+-. |+|+-
T Consensus 132 f~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIl-ee~~kVteGVvdVivy~~p~dk~KNRGF 210 (506)
T KOG0117|consen 132 FCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEIL-EEMKKVTEGVVDVIVYPSPDDKTKNRGF 210 (506)
T ss_pred eecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHH-HHHHhhCCCeeEEEEecCccccccccce
Confidence 34677777777887766 22222 22 34444 44677789999988877653 33332
Q ss_pred --h--cCHHHHHHhhhc--CCceEEeecccccccCCCCcchhhhh-ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEE
Q 009228 247 --I--SSHSHLASVLRK--SSKLVVSEDGKKIKRQNPLTESDLEE-LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR 319 (539)
Q Consensus 247 --t--~d~~~V~~ALr~--S~~LeVsedg~kVRR~~Pl~e~~~~~-~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vr 319 (539)
. .|....+.|-++ +..+.|....-.|--.+|..+-+.+. .+-+.|||+||+.++|+|.|+++|++||+|++|.
T Consensus 211 aFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVk 290 (506)
T KOG0117|consen 211 AFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVK 290 (506)
T ss_pred EEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEee
Confidence 1 233333333332 23566666666666666665433332 2457899999999999999999999999999998
Q ss_pred EeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeecCCC
Q 009228 320 TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 320 I~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~~~~~~k 388 (539)
++ |-||||.|.+.++|.+|++++|+.++.+.-|.|.|+.....+
T Consensus 291 k~-------------------------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 291 KP-------------------------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred cc-------------------------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 74 348999999999999999999999999999999888654433
No 37
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.1e-11 Score=120.54 Aligned_cols=80 Identities=31% Similarity=0.366 Sum_probs=70.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
+..||-|.||++++++++|+++|..||.|.+|.|.+++.++. .||||||.|++.|+|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~-----------------~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGL-----------------SKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCc-----------------ccceEEEEEecHHHHHHHHHH
Confidence 678999999999999999999999999999999988865432 399999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.--.|+|.+..
T Consensus 251 LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccCcccceEEEEEEecC
Confidence 99987666567777654
No 38
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.21 E-value=3.4e-11 Score=96.63 Aligned_cols=64 Identities=31% Similarity=0.412 Sum_probs=53.3
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCC
Q 009228 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~ 370 (539)
|||+|||.++++++|+++|+.||.|..|++.+.+. ...+++|||+|.+.++|++|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~------------------~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD------------------GQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT------------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec------------------cccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999975421 123889999999999999999988755
Q ss_pred CC
Q 009228 371 GN 372 (539)
Q Consensus 371 ~~ 372 (539)
.+
T Consensus 63 ~~ 64 (70)
T PF14259_consen 63 EI 64 (70)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 39
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=4.9e-11 Score=104.42 Aligned_cols=75 Identities=24% Similarity=0.298 Sum_probs=62.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
-.|.|||+|||+++|.|++-++|.+||.|..|||-.. -..+|.|||.|++..+|++|++.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--------------------k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--------------------KETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--------------------cCcCceEEEEehHhhhHHHHHHH
Confidence 3589999999999999999999999999999999322 12388999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
|++..... +.+.++.
T Consensus 77 lsg~n~~~--ryl~vly 91 (124)
T KOG0114|consen 77 LSGYNVDN--RYLVVLY 91 (124)
T ss_pred hcccccCC--ceEEEEe
Confidence 99877544 4444444
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=5.2e-11 Score=118.51 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=65.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
...||||.||+.++|+++|++||+.||+|.+|+|++++. .++||||+|++.++|+.||.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------------------t~gfAfVtF~d~~aaetAll- 62 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------------------YACTAYVTFKDAYALETAVL- 62 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------------------cceEEEEEECCHHHHHHHHh-
Confidence 457999999999999999999999999999999976531 15799999999999999996
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.+..+.|....
T Consensus 63 LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 63 LSGATIVDQRVCITRWG 79 (243)
T ss_pred cCCCeeCCceEEEEeCc
Confidence 99999877766665543
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.18 E-value=4.1e-11 Score=133.63 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=68.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||++++++++|+++|++||.|++|+|+.+..++ .+||||||+|++.|+|++||+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg-----------------kskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-----------------KHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCC-----------------CcCCeEEEEeCcHHHHHHHHHh
Confidence 45799999999999999999999999999999998764321 2489999999999999999999
Q ss_pred HcCCCCCCCceEEEE
Q 009228 367 LNDEGNWRSGLRVRL 381 (539)
Q Consensus 367 LN~~~~~~~glrV~l 381 (539)
||+..++++.|+|..
T Consensus 169 lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 169 MNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCeEEecceeeecc
Confidence 999998888777763
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.18 E-value=7.6e-11 Score=126.97 Aligned_cols=81 Identities=27% Similarity=0.298 Sum_probs=68.5
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
.+...+||||+|||.++++++|+++|++||.|..|+|+.++.++ ..||||||+|.+.|+|++|
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~-----------------~skg~afVeF~~~e~A~~A 147 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSR-----------------RSKGVAYVEFYDVESVIKA 147 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC-----------------CcceEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999999998764321 1389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEe
Q 009228 364 IAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~ 382 (539)
|+ |++..+.++.|.|...
T Consensus 148 l~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 148 LA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred HH-hCCCEECCeeeEEeec
Confidence 97 8998877766666543
No 43
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=8e-11 Score=130.54 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=66.2
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+||+.++|+++|+++|+.||+|.+|.|+.+.+ ...+|||||+|++.|+|++|++
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~------------------g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS------------------GRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC------------------CCcccEEEEEECCHHHHHHHHH
Confidence 3457899999999999999999999999999999976521 1238899999999999999999
Q ss_pred HHcCCCCC----CCceEEEEe
Q 009228 366 ELNDEGNW----RSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~----~~glrV~l~ 382 (539)
.||+..++ ++.+.|..+
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred HhCCcEecccccceeeEeecc
Confidence 99998877 555555444
No 44
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=1.1e-10 Score=90.75 Aligned_cols=66 Identities=35% Similarity=0.422 Sum_probs=57.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
+|||+|||.+++.++|+++|+.||.|..|++.... ...+++|||+|.+.++|++|++.|++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-------------------~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-------------------GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-------------------CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999996532 01378999999999999999999988
Q ss_pred CCCCC
Q 009228 370 EGNWR 374 (539)
Q Consensus 370 ~~~~~ 374 (539)
..+.+
T Consensus 62 ~~~~~ 66 (72)
T smart00362 62 TKLGG 66 (72)
T ss_pred cEECC
Confidence 66544
No 45
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=6.2e-11 Score=124.64 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=92.8
Q ss_pred CCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecccccccCCCCcchhhhhcccee
Q 009228 211 DLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRI 290 (539)
Q Consensus 211 D~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rT 290 (539)
++||.||+.-.. ...+-|| .|... ++.+....||.+-..|.=----..||-.+--.+ +-...+.
T Consensus 63 einl~kDk~t~~---s~gcCFv------~~~tr----k~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~e---r~~~e~K 126 (510)
T KOG0144|consen 63 EINLIKDKSTGQ---SKGCCFV------KYYTR----KEADEAINALHNQKTLPGMHHPVQVKYADGERE---RIVEERK 126 (510)
T ss_pred EEEeecccccCc---ccceEEE------EeccH----HHHHHHHHHhhcccccCCCCcceeecccchhhh---ccccchh
Confidence 789999973321 2223344 34332 345566667766543211111112222221111 1134688
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCC
Q 009228 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~ 370 (539)
|||+-|+..+|+++|+++|++||.|++|+|+++.+ ...||||||.|++.|-|..||+.||+.
T Consensus 127 LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------------------~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 127 LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------------------GLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred hhhhhccccccHHHHHHHHHhhCccchhhheeccc------------------ccccceeEEEEehHHHHHHHHHhhccc
Confidence 99999999999999999999999999999998642 123899999999999999999999986
Q ss_pred CCCC---CceEEEEeeecCCC
Q 009228 371 GNWR---SGLRVRLMLRRGSK 388 (539)
Q Consensus 371 ~~~~---~glrV~l~~~~~~k 388 (539)
..-+ ..|-|+++.....|
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred eeeccCCCceEEEecccCCCc
Confidence 4322 24666666544333
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1e-10 Score=117.15 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=64.4
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..+.+||||+||..-+|+++|++.|+.||.|..|||..+ ||||||.|++.|+|.+||
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----------------------qGYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----------------------QGYAFVRFETKEAAAHAI 217 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----------------------cceEEEEecchhhHHHHH
Confidence 456799999999999999999999999999999999532 899999999999999999
Q ss_pred HHHcCCCCCCCceEEE
Q 009228 365 AELNDEGNWRSGLRVR 380 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~ 380 (539)
..+|+.++.+.-+|+.
T Consensus 218 v~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 218 VQMNNTEIGGQLVRCS 233 (321)
T ss_pred HHhcCceeCceEEEEe
Confidence 9999998766544433
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=3.2e-10 Score=108.55 Aligned_cols=79 Identities=35% Similarity=0.429 Sum_probs=69.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.++|||+||+.++|+++|.++|+.||.|..|+|..++.+ ...+|||||+|.+.++|.+|++.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~-----------------~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRET-----------------GKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecccc-----------------CccCceEEEEecCHHHHHHHHHHc
Confidence 589999999999999999999999999999999776421 124899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
++..+.++-|+|....
T Consensus 178 ~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 178 NGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCeECCceeEeeccc
Confidence 9888888878877754
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.15 E-value=1.5e-10 Score=128.78 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=60.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+++. + + .+||||||+|++.|+|++||+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~-s----------G-------~sRGfaFV~F~~~e~A~~Ai~ 117 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF-S----------G-------QNRGYAFVTFCGKEEAKEAVK 117 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC-C----------C-------CccceEEEEeCCHHHHHHHHH
Confidence 356899999999999999999999999999999998762 1 1 248999999999999999999
Q ss_pred HHcCCCC
Q 009228 366 ELNDEGN 372 (539)
Q Consensus 366 ~LN~~~~ 372 (539)
.||+..+
T Consensus 118 ~lng~~i 124 (578)
T TIGR01648 118 LLNNYEI 124 (578)
T ss_pred HcCCCee
Confidence 9998654
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=99.11 E-value=2e-10 Score=122.34 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=66.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCH--HHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV--ELAEKA 363 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~--E~AekA 363 (539)
....+|||+||.+++++++|+++|+.||.|++|.|++.. .||||||||.+. +++.+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET---------------------GRGFAFVEMssdddaEeeKA 66 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK---------------------GRSFAYIDFSPSSTNSLTKL 66 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc---------------------CCceEEEEecCCcHHHHHHH
Confidence 345689999999999999999999999999999996321 188999999987 789999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009228 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~ 383 (539)
|+.||+.+.-++.|+|..+.
T Consensus 67 ISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred HHHhcCCeecCceeEEeecc
Confidence 99999998777778877653
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.10 E-value=2.1e-10 Score=125.43 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=64.4
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
+++|||+|||.++++++|+++|+.||.|.+|.|+. .|+||||||++.|+|++||+.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----------------------~k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----------------------GKRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----------------------CCCEEEEEeCchHHHHHHHHHh
Confidence 68999999999999999999999999999999863 1779999999999999999975
Q ss_pred --cCCCCCCCceEEEEeee
Q 009228 368 --NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 --N~~~~~~~glrV~l~~~ 384 (539)
|+..++++.|+|.+...
T Consensus 59 ~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred hcCCceEcCeEEEEEecCC
Confidence 56667777777777643
No 51
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=3.8e-10 Score=87.18 Aligned_cols=69 Identities=35% Similarity=0.444 Sum_probs=56.4
Q ss_pred EecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCC
Q 009228 293 AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (539)
Q Consensus 293 V~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~ 372 (539)
|+||+.+++.++|+++|+.||.|..|.|...... ...+++|||+|.+.++|++|++.|++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~-----------------~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDT-----------------GKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCC-----------------CCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 5789999999999999999999999999754211 12378999999999999999999997665
Q ss_pred CCCceE
Q 009228 373 WRSGLR 378 (539)
Q Consensus 373 ~~~glr 378 (539)
.++.++
T Consensus 64 ~~~~~~ 69 (71)
T smart00360 64 DGRPLK 69 (71)
T ss_pred CCcEEE
Confidence 544443
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=2e-10 Score=117.47 Aligned_cols=81 Identities=21% Similarity=0.210 Sum_probs=71.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..+.|+|.|||+..-+.||+.+|++||.|.+|.|+... .++|||+||+|++.+||++|-++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-------------------RGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-------------------RGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-------------------CCCCccceEEecChhhHHHHHHH
Confidence 45789999999999999999999999999999998642 23599999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009228 367 LNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~~ 386 (539)
|++..+.++.|.|..+..+.
T Consensus 156 LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred hhcceeeceEEEEeccchhh
Confidence 99999888888888776553
No 53
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.05 E-value=9.6e-10 Score=85.81 Aligned_cols=72 Identities=36% Similarity=0.488 Sum_probs=60.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
+|||+|||.+++.++|+++|+.||.|..+.+...... ..+++|||+|.+.++|..|++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999754210 2378999999999999999999998
Q ss_pred CCCCCCceEE
Q 009228 370 EGNWRSGLRV 379 (539)
Q Consensus 370 ~~~~~~glrV 379 (539)
..+++..+.|
T Consensus 63 ~~~~~~~~~v 72 (74)
T cd00590 63 KELGGRPLRV 72 (74)
T ss_pred CeECCeEEEE
Confidence 7755544444
No 54
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.05 E-value=5.3e-10 Score=122.36 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=67.1
Q ss_pred cceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+||+. .+|+++|+++|+.||.|.+|+|+++ .+|||||+|++.++|++||+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----------------------~~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----------------------KKETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 467999999997 6999999999999999999999643 16899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
.||+..++++.|+|.+..
T Consensus 332 ~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred HhCCCEECCceEEEEEcc
Confidence 999999988888887653
No 55
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.04 E-value=3.4e-10 Score=121.94 Aligned_cols=82 Identities=32% Similarity=0.428 Sum_probs=73.4
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
++|||+|+|+++++++|.++|+.+|.|.++++++|+.+++ .|||+|+||.+.|+|++|++.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~-----------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK-----------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC-----------------cCceeeEecCchhhHHHHHHhcC
Confidence 8999999999999999999999999999999999875443 38999999999999999999999
Q ss_pred CCCCCCCceEEEEeeecCC
Q 009228 369 DEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~~~~ 387 (539)
+.++.++.|+|.+......
T Consensus 82 g~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CcccCCceEEeecccccch
Confidence 9998888888887755443
No 56
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.04 E-value=1e-09 Score=117.73 Aligned_cols=79 Identities=24% Similarity=0.297 Sum_probs=59.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
..+|||+|||.+++.++|+++|+.||.|+..+|.. |+ .. .++.+|+||+|++.++++.||+.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v------------r~--~~---~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV------------RS--PG---GKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE------------ec--cC---CCcCceEEEEEeecchhhhhhhcC
Confidence 35699999999999999999999999999999843 11 00 112379999999999999999843
Q ss_pred cCCCCCCCceEEEEeeecC
Q 009228 368 NDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~~~ 386 (539)
.+...+.++.|-.++.
T Consensus 351 ---p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 351 ---PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ---ccccCCeeEEEEeccc
Confidence 3344556666655433
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=1.8e-09 Score=114.23 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=63.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
-..+-|||+.||.|+.+++|.-+|++.|+|-.+||+.+..++ .+||||||+|.+.|+|++||+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG-----------------~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSG-----------------DNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCC-----------------CCcceEEEEeecHHHHHHHHH
Confidence 457899999999999999999999999999999999875432 359999999999999999999
Q ss_pred HHcCCCCC
Q 009228 366 ELNDEGNW 373 (539)
Q Consensus 366 ~LN~~~~~ 373 (539)
.||+.++-
T Consensus 144 ~lnn~Eir 151 (506)
T KOG0117|consen 144 ELNNYEIR 151 (506)
T ss_pred HhhCcccc
Confidence 99998754
No 58
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.7e-10 Score=112.64 Aligned_cols=86 Identities=27% Similarity=0.348 Sum_probs=76.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+.|||||++|.+++++.-|...|=.||.|+.|.| |.|..+.| .+||+||||+..|||..||.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqi----------PlDyesqk-------HRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQI----------PLDYESQK-------HRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhccc----------ccchhccc-------ccceeEEEeeccchhHHHhh
Confidence 46789999999999999999999999999999999 55555544 48899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCCC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~~k 388 (539)
.||+.++.++.|+|.++..-..|
T Consensus 71 NMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 71 NMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred cCchhhhcceeEEEeecCCcccc
Confidence 99999999999999998765444
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=8.6e-10 Score=108.74 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=63.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..-..|||+||++++..|+|+++|++||+|....|+.|+.+++ +|||+||+|.|.|+|++|++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~r-----------------skGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGR-----------------SKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcc-----------------ccceeeEEeecHHHHHHHhc
Confidence 3456899999999999999999999999999999988765432 39999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
..|- .++++...+.|+
T Consensus 73 dp~p-iIdGR~aNcnlA 88 (247)
T KOG0149|consen 73 DPNP-IIDGRKANCNLA 88 (247)
T ss_pred CCCC-cccccccccchh
Confidence 6654 344444444443
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=7e-11 Score=112.47 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=75.2
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
+..++.-|||+|||++.|+.+|..+|++||+|.+|.+++++.+++ +|||||..|++.-+..-|
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGK-----------------SKGFaFLcYEDQRSTILA 93 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGK-----------------SKGFAFLCYEDQRSTILA 93 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCc-----------------ccceEEEEecCccceEEE
Confidence 445678999999999999999999999999999999999875543 399999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009228 364 IAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~ 384 (539)
|..||+..+.++.|+|.-...
T Consensus 94 VDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 94 VDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred EeccCCceecceeEEeeeccc
Confidence 999999999999999987643
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.96 E-value=3e-09 Score=112.21 Aligned_cols=77 Identities=29% Similarity=0.341 Sum_probs=65.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhh-hcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs-~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
...|+|||.|||+|+.+++|+++|. +.|+|+.|.++.|. ++| .||||.|||+++|.++||+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-----------~GK-------~rGcavVEFk~~E~~qKa~ 103 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-----------SGK-------ARGCAVVEFKDPENVQKAL 103 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-----------CCC-------cCCceEEEeeCHHHHHHHH
Confidence 4568899999999999999999995 59999999998763 233 3899999999999999999
Q ss_pred HHHcCCCCCCCceEEE
Q 009228 365 AELNDEGNWRSGLRVR 380 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~ 380 (539)
+.||.....++.|.|.
T Consensus 104 E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 104 EKLNKYEVNGRELVVK 119 (608)
T ss_pred HHhhhccccCceEEEe
Confidence 9999887666665544
No 62
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=2.1e-09 Score=115.92 Aligned_cols=160 Identities=21% Similarity=0.240 Sum_probs=104.7
Q ss_pred HhhhhhhccCCCcCCChHHHHhhc---cCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecccccccC---
Q 009228 202 LNQVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQ--- 275 (539)
Q Consensus 202 ~kQvEyYFSD~NL~~D~fL~~~i~---kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR~--- 275 (539)
-.|||-+||+..-.+-.|+...-. +..-|||.+++...-+|..+.+.....- ..+|.|+...++.|-.
T Consensus 19 ~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~------Gr~l~v~~A~~R~r~e~~~ 92 (678)
T KOG0127|consen 19 GEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE------GRILNVDPAKKRARSEEVE 92 (678)
T ss_pred hhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc------ceecccccccccccchhcc
Confidence 358889999999888777765421 2345677776665555444443321000 0012222211111111
Q ss_pred --------CCCcc----hhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcc
Q 009228 276 --------NPLTE----SDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGML 343 (539)
Q Consensus 276 --------~Pl~e----~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~ 343 (539)
.++.. .+.-......|+|+|||+.+..++|+.+|+.||.|..|.| |+. .++.
T Consensus 93 ~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I--P~k-------------~dgk- 156 (678)
T KOG0127|consen 93 KGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI--PRK-------------KDGK- 156 (678)
T ss_pred cccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEc--ccC-------------CCCC-
Confidence 01111 1111223678999999999999999999999999999998 421 1211
Q ss_pred cCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeec
Q 009228 344 FSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 344 ~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~~~~ 385 (539)
-.|||||.|.+..+|++|++.+|+..+.++.+-|.++...
T Consensus 157 --lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 157 --LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred --ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 2589999999999999999999999999999999988643
No 63
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.92 E-value=1.4e-09 Score=105.51 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=69.0
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
.+|-|-||-+-++.++|..+|++||.|-.|-|-++..+ -..+|||||-|.+..+|++|++.|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T-----------------r~sRgFaFVrf~~k~daedA~damD 76 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT-----------------RQSRGFAFVRFHDKRDAEDALDAMD 76 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceeccccccc-----------------ccccceeEEEeeecchHHHHHHhhc
Confidence 47899999999999999999999999999999443321 1248999999999999999999999
Q ss_pred CCCCCCCceEEEEeee
Q 009228 369 DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~ 384 (539)
+..++++.|+|.++.-
T Consensus 77 G~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 77 GAVLDGRELRVQMARY 92 (256)
T ss_pred ceeeccceeeehhhhc
Confidence 9999999999988753
No 64
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.91 E-value=3.6e-09 Score=82.02 Aligned_cols=55 Identities=42% Similarity=0.512 Sum_probs=46.1
Q ss_pred HHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009228 305 LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 305 L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l 381 (539)
|.++|++||+|++|.+.... +++|||+|++.++|++|++.||+..+.++.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999996320 37899999999999999999999887777777664
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.86 E-value=3.2e-09 Score=101.35 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=70.5
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
+..||||+||++.++++-|.++|-++|.|.+|.|=+++.+ -+.+|||||||.++|+|+-|++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~-----------------~~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT-----------------QKHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc-----------------ccccceeEEEEechhhhHHHHHH
Confidence 4679999999999999999999999999999999333211 12489999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||...++++.|+|..+.
T Consensus 71 ln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHhcCceeEEEecc
Confidence 99999999999999887
No 66
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=6.2e-09 Score=112.39 Aligned_cols=80 Identities=26% Similarity=0.282 Sum_probs=65.0
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.+||||+||++|+|+++|.+.|++||+|+++.||.+.+++. .+|+|||-|.+.++|.+||+..
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~-----------------skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGH-----------------SKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCC-----------------cccceEEEeccHHHHHHHHHhc
Confidence 38999999999999999999999999999999998765432 3899999999999999999976
Q ss_pred cC------CCCCCCceEEEEeee
Q 009228 368 ND------EGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 N~------~~~~~~glrV~l~~~ 384 (539)
+- ..+.++-|+|.++..
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred CccCCCceEEEeccEEeeeeccc
Confidence 31 123344566666543
No 67
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=7.1e-09 Score=103.54 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=69.0
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
..++...|||.+||..+|..+|+.+|+.||.|..-||+.++.++- .||.+||.|+..++|+.|
T Consensus 123 ~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~-----------------srGVgFiRFDKr~EAe~A 185 (360)
T KOG0145|consen 123 DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL-----------------SRGVGFIRFDKRIEAEEA 185 (360)
T ss_pred hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce-----------------ecceeEEEecchhHHHHH
Confidence 356778999999999999999999999999999999988765421 389999999999999999
Q ss_pred HHHHcCCCCCCC--ceEEEEee
Q 009228 364 IAELNDEGNWRS--GLRVRLML 383 (539)
Q Consensus 364 v~~LN~~~~~~~--glrV~l~~ 383 (539)
|+.||+..--+- .+.|.++.
T Consensus 186 Ik~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 186 IKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred HHhccCCCCCCCCCCeEEEecC
Confidence 999999864332 35555554
No 68
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.81 E-value=7.5e-09 Score=112.93 Aligned_cols=73 Identities=23% Similarity=0.341 Sum_probs=57.6
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhc------------CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEE
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAV------------GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAF 351 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~f------------G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AF 351 (539)
.+...++|||+|||.++|+++|+++|+.| +.|..|.+. ..|||||
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~kg~af 227 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----------------------KEKNFAF 227 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----------------------CCCCEEE
Confidence 45578999999999999999999999985 234444442 1388999
Q ss_pred EEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 009228 352 VEYESVELAEKAIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 352 VEFet~E~AekAv~~LN~~~~~~~glrV~ 380 (539)
|||++.|+|++||+ ||+..+.+..|+|.
T Consensus 228 VeF~~~e~A~~Al~-l~g~~~~g~~l~v~ 255 (509)
T TIGR01642 228 LEFRTVEEATFAMA-LDSIIYSNVFLKIR 255 (509)
T ss_pred EEeCCHHHHhhhhc-CCCeEeeCceeEec
Confidence 99999999999995 99887666555553
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=103.82 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=101.0
Q ss_pred CCCCCChHHHHHHHhhhhhhccCCCcCCChHHHHhhccC------CCCceecccccchhhHHH--h-hcCHHHHHHhhhc
Q 009228 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKD------PEGYVPISTVASFKKIKA--I-ISSHSHLASVLRK 259 (539)
Q Consensus 189 s~~~~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd------~dGyVpI~~IasFkKmK~--L-t~d~~~V~~ALr~ 259 (539)
+......|.+.+|..---||=-+.-+....|.+.++++- .|-++.+.+ +.++|+. + ..|.- +.+.
T Consensus 137 ~~a~~~~d~l~~l~rt~p~ykrn~p~Icsf~v~geckRG~ec~yrhEkp~d~~L--~~qni~dryyg~ndPv-a~ki--- 210 (377)
T KOG0153|consen 137 ARALAPNDMLRKLQRTTPYYKRNRPHICSFFVKGECKRGAECPYRHEKPPDDPL--SLQNIKDRYYGLNDPV-ALKI--- 210 (377)
T ss_pred hcccchHHHHHHHhccCccccCCCCccccceeeccccccccccccccCCCCcch--hhcccccccccccChH-HHHH---
Confidence 444556677778888888887777777777766655421 122222222 1222221 1 12211 1111
Q ss_pred CCceEEeecccccccCCCCc-chhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCcccc
Q 009228 260 SSKLVVSEDGKKIKRQNPLT-ESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAK 338 (539)
Q Consensus 260 S~~LeVsedg~kVRR~~Pl~-e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K 338 (539)
+.|...+. .+..++...+||||++|-..+++.+|++.|.+||+|++|++..
T Consensus 211 ------------l~ra~~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~---------------- 262 (377)
T KOG0153|consen 211 ------------LNRAGSAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP---------------- 262 (377)
T ss_pred ------------HhhcccccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec----------------
Confidence 11111111 2233556778999999988999999999999999999999953
Q ss_pred ccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeecC
Q 009228 339 SEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 339 ~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~~~~~ 386 (539)
.++||||+|.+.++|++|.+++-+ .+..+|.||.|.....
T Consensus 263 -------~~~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 -------RKGCAFVTFTTREAAEKAAEKSFN-KLVINGFRLKIKWGRP 302 (377)
T ss_pred -------ccccceeeehhhHHHHHHHHhhcc-eeeecceEEEEEeCCC
Confidence 167999999999999999998776 5556788888876544
No 70
>smart00361 RRM_1 RNA recognition motif.
Probab=98.80 E-value=1.1e-08 Score=83.25 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=47.8
Q ss_pred HHHHHHHhh----hcCCeeEEE-EeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCc
Q 009228 302 HQNLMKIFS----AVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (539)
Q Consensus 302 ~e~L~e~Fs----~fG~V~~Vr-I~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~g 376 (539)
+++|+++|+ +||.|.+|. |..+..+. ....+||+||+|++.++|.+|++.||+..+.++-
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~---------------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY---------------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC---------------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 578899998 999999995 65553210 0123899999999999999999999998766654
Q ss_pred eE
Q 009228 377 LR 378 (539)
Q Consensus 377 lr 378 (539)
|+
T Consensus 67 l~ 68 (70)
T smart00361 67 VK 68 (70)
T ss_pred EE
Confidence 44
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.3e-08 Score=106.34 Aligned_cols=111 Identities=25% Similarity=0.280 Sum_probs=82.6
Q ss_pred cCHHHHHHhhhcCCceEEeecccccccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCC
Q 009228 248 SSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSG 327 (539)
Q Consensus 248 ~d~~~V~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~ 327 (539)
.+......||.+-..-.+. |+.||--. ...+...|||+||+++++..+|.++|+.||+|.+|++..+..
T Consensus 45 ~~~~da~~A~~~~n~~~~~--~~~~rim~-------s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-- 113 (369)
T KOG0123|consen 45 QQPADAERALDTMNFDVLK--GKPIRIMW-------SQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-- 113 (369)
T ss_pred CCHHHHHHHHHHcCCcccC--CcEEEeeh-------hccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC--
Confidence 4566667777765433332 33343211 111223399999999999999999999999999999975421
Q ss_pred CCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeecCC
Q 009228 328 GGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 328 ~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~~~~~~ 387 (539)
..||| ||+|+++++|++|++.||+..+.++.+.|.+...+..
T Consensus 114 -----------------g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 114 -----------------GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred -----------------Cceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 14999 9999999999999999999998888888877765443
No 72
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.1e-08 Score=102.66 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=71.4
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.--|||+.|..+++.|+|++-|..||+|...+|++|..+.| +|||+||.|-..++||.||..|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K-----------------sKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK-----------------SKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCc-----------------ccceeEEeccchHHHHHHHHHh
Confidence 34689999999999999999999999999999999865432 3999999999999999999999
Q ss_pred cCCCCCCCceEEEEeeecC
Q 009228 368 NDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~~~ 386 (539)
|++=+.++.+|-.++.++.
T Consensus 125 nGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CCeeeccceeeccccccCc
Confidence 9987777777777776655
No 73
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.75 E-value=1.5e-08 Score=113.07 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=72.9
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
-.+.+|||||++|+..+++++|..+|+.||+|.+|.++. +++||||......+|++|
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~ka 473 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKA 473 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHH
Confidence 356789999999999999999999999999999999864 378999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeecCCC
Q 009228 364 IAELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~~~~k 388 (539)
|.+|++..+..+-++|.++..+..|
T Consensus 474 lqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 474 LQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred HHHHhcccccceeeEEeeeccCCcc
Confidence 9999988887778888888765555
No 74
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=2.1e-08 Score=105.84 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=65.1
Q ss_pred CcchhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCH
Q 009228 278 LTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (539)
Q Consensus 278 l~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~ 357 (539)
+...+..+.+.-.+||.-+|..++|.||+++|++||.|..|.|++|+.++ ..||||||.|.+.
T Consensus 24 ~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~-----------------~s~gcCFv~~~tr 86 (510)
T KOG0144|consen 24 LDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG-----------------QSKGCCFVKYYTR 86 (510)
T ss_pred CCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccC-----------------cccceEEEEeccH
Confidence 33334455566789999999999999999999999999999998875432 2499999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 009228 358 ELAEKAIAELNDEGN 372 (539)
Q Consensus 358 E~AekAv~~LN~~~~ 372 (539)
++|.+|+..|.+...
T Consensus 87 k~a~~a~~Alhn~kt 101 (510)
T KOG0144|consen 87 KEADEAINALHNQKT 101 (510)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999987543
No 75
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.67 E-value=1.9e-08 Score=108.92 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=68.3
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCC
Q 009228 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~ 370 (539)
|||+||..++++++|+.+|+.||.|..|.+..+- +.+ ..|||+||+|.+.|+|.+|++.||+-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~----------~tG-------~skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS----------ETG-------RSKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeecccc----------ccc-------cccCcceEEEecHHHHHHHHHHhccc
Confidence 8999999999999999999999999999996542 222 23899999999999999999999998
Q ss_pred CCCCCceEEEEeeecC
Q 009228 371 GNWRSGLRVRLMLRRG 386 (539)
Q Consensus 371 ~~~~~glrV~l~~~~~ 386 (539)
++-++-|+|.+...+.
T Consensus 344 elAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 344 ELAGRLIKVSVVTERV 359 (549)
T ss_pred eecCceEEEEEeeeec
Confidence 8888888887776544
No 76
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=6.4e-08 Score=96.80 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=69.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
..|+|-=||..+|+|+|+.+|+..|+|+++.+++|+.++. .-||+||.|-+++||++||..||
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq-----------------SLGYGFVNYv~p~DAe~AintlN 104 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ-----------------SLGYGFVNYVRPKDAEKAINTLN 104 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeecccccc-----------------ccccceeeecChHHHHHHHhhhc
Confidence 4577778999999999999999999999999999864322 36899999999999999999999
Q ss_pred CCCCCCCceEEEEeee
Q 009228 369 DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~ 384 (539)
+-++..+.++|..+..
T Consensus 105 GLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 105 GLRLQNKTIKVSYARP 120 (360)
T ss_pred ceeeccceEEEEeccC
Confidence 9998888888888754
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.60 E-value=2.7e-08 Score=103.35 Aligned_cols=153 Identities=16% Similarity=0.276 Sum_probs=96.4
Q ss_pred HhhhhhhccCCCcCCChHHHHhhc---cCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecccccccCCCC
Q 009228 202 LNQVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPL 278 (539)
Q Consensus 202 ~kQvEyYFSD~NL~~D~fL~~~i~---kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~kVRR~~Pl 278 (539)
.+.|.+||+..-..+|..+++... ....|||..+ +...|.++|..... ..||+.|--+..+
T Consensus 20 ee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~-------------~~~~v~~vl~~~~h---~~dgr~ve~k~av 83 (311)
T KOG4205|consen 20 EESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFA-------------TPEGVDAVLNARTH---KLDGRSVEPKRAV 83 (311)
T ss_pred HHHHHHHhcccCceeeEEEeccCCCCCcccccceecC-------------CCcchheeeccccc---ccCCccccceecc
Confidence 345668998888888876665321 1234444432 23344444443321 1223333222222
Q ss_pred cchhh----hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEe
Q 009228 279 TESDL----EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEY 354 (539)
Q Consensus 279 ~e~~~----~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEF 354 (539)
+..+. +....+.|||++|+.++++++|+++|++||.|..+.|.++.++. ..+||+||+|
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~-----------------~~rgFgfv~~ 146 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS-----------------RPRGFGFVTF 146 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc-----------------ccccceeeEe
Confidence 22211 12246799999999999999999999999999999998875421 2389999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCCceEEEEeeecCCC
Q 009228 355 ESVELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 355 et~E~AekAv~~LN~~~~~~~glrV~l~~~~~~k 388 (539)
++++++++++. ..-..+.++.+.|..+.++...
T Consensus 147 ~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 147 DSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 99999999987 3333444555666666555443
No 78
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.3e-08 Score=107.79 Aligned_cols=62 Identities=26% Similarity=0.443 Sum_probs=55.8
Q ss_pred HHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEe
Q 009228 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVS 266 (539)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVs 266 (539)
.+.|.+|||||||.+||.+|.||++ +||+|.+|++|+||..|+.|+++|.+||+++-+|++.
T Consensus 301 ~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~ 362 (448)
T KOG2590|consen 301 IAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEET 362 (448)
T ss_pred ccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhcc
Confidence 4678899999999999999998775 7899999999999999999999999999999765554
No 79
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=4.6e-08 Score=101.50 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=67.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
-|.|||+.+.++..++.|+.-|..||.|++|.|--|-. ..+.||||||||+-.|.|+-|++.|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~-----------------T~kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccc-----------------cccccceEEEEEeCcHHHHHHHHHh
Confidence 36799999999999999999999999999999955421 1235999999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 009228 368 NDEGNWRSGLRVRL 381 (539)
Q Consensus 368 N~~~~~~~glrV~l 381 (539)
|+..+.++.++|..
T Consensus 176 Ng~mlGGRNiKVgr 189 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGR 189 (544)
T ss_pred ccccccCccccccC
Confidence 99998888887763
No 80
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=3.5e-07 Score=102.27 Aligned_cols=13 Identities=15% Similarity=0.023 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCC
Q 009228 97 SPHHVYPPHGTGA 109 (539)
Q Consensus 97 ~~~~~~~~~~~~~ 109 (539)
+.|-..+||||++
T Consensus 589 ~g~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 589 GGFLGGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 5554445554444
No 81
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=7.2e-08 Score=97.77 Aligned_cols=75 Identities=25% Similarity=0.240 Sum_probs=68.5
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.+.+|+|.||...++.++|++.|++||.|..+.|+ |+|+||.|+-.|+|..|++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhc
Confidence 45689999999999999999999999999999995 66999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009228 367 LNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~~ 386 (539)
||+.++.++.|+|.|...+.
T Consensus 132 l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccccccccceeeeeeecccc
Confidence 99999999999999876543
No 82
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.49 E-value=3.5e-07 Score=90.09 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=68.7
Q ss_pred ceeEEEecCCCCCCHHHHHH----HhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e----~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
..||||.||.+.+..++|++ +|++||+|..|..+.. .| -+|-|||.|++.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt-------------~K-------mRGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT-------------PK-------MRGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC-------------CC-------ccCceEEEecChhHHHHH
Confidence 44999999999999999888 9999999999999743 11 278899999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeecC
Q 009228 364 IAELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~~~ 386 (539)
++.|+|-.+.++.|+|..+....
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~s 91 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDS 91 (221)
T ss_pred HHHhcCCcccCchhheecccCcc
Confidence 99999999999999988775433
No 83
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4.8e-08 Score=102.55 Aligned_cols=61 Identities=25% Similarity=0.474 Sum_probs=55.0
Q ss_pred HHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcC
Q 009228 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260 (539)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S 260 (539)
+..|..|||||||..||..|.||++++++ +||||+++|..|.|.+.|..|..++.+||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~k--aGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFKK--AGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhhh--cccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 46677799999999999999999999655 69999999999999999999999999888865
No 84
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=5.8e-07 Score=100.62 Aligned_cols=25 Identities=44% Similarity=0.982 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 009228 77 PPPPPAAAMVHPHPPPPHPPSPHHV 101 (539)
Q Consensus 77 ppppp~~~~~~~~~ppp~p~~~~~~ 101 (539)
||||||+++|.+.+|||||+++|.+
T Consensus 582 ppPPPpp~g~~Gg~ppPP~~gm~pm 606 (1102)
T KOG1924|consen 582 PPPPPPPGGFLGGPPPPPPPGMFPM 606 (1102)
T ss_pred CCCcCCCCCCCCCCCCCCCCCcccc
Confidence 3333444556556666666666655
No 85
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=8.4e-08 Score=102.08 Aligned_cols=83 Identities=30% Similarity=0.363 Sum_probs=71.4
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..+..+|||+||+..++.+.|+++|+.||+|.+++|..+.. ...+||+||+|++.|+|.+|+
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~------------------g~skG~gfV~fs~~eeA~~A~ 328 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN------------------GKSKGFGFVEFSSPEEAKKAM 328 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEeccC------------------CCccceEEEEcCCHHHHHHHH
Confidence 45678999999999999999999999999999999976421 124899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009228 365 AELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~ 385 (539)
..+|+..+..+.+.|.++...
T Consensus 329 ~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 329 TEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred HhhChhhhcCCchhhhHHhhh
Confidence 999999988887877777643
No 86
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=4.5e-07 Score=100.85 Aligned_cols=80 Identities=23% Similarity=0.270 Sum_probs=67.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
+|||+||.+++|.++|+.+|.+.|.|.+|+|..-.+. +. + +-++||+||||.+.|+|+.|++.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~--------~~-k-----~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDP--------AN-K-----YLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccc--------cc-c-----ccccceeEEEecCHHHHHHHHHHhcC
Confidence 3999999999999999999999999999999542211 11 1 22479999999999999999999999
Q ss_pred CCCCCCceEEEEee
Q 009228 370 EGNWRSGLRVRLML 383 (539)
Q Consensus 370 ~~~~~~glrV~l~~ 383 (539)
+.+.+..|.|.+..
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 99888888888766
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.43 E-value=3.7e-07 Score=96.71 Aligned_cols=75 Identities=27% Similarity=0.230 Sum_probs=65.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+.|+|||+|||.++|++.|++-|.+||.|+.+.|+... | .|| .|.|.+.|+||.|+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-------------k-------skG--VVrF~s~edAEra~a 591 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-------------K-------SKG--VVRFFSPEDAERACA 591 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccC-------------C-------ccc--eEEecCHHHHHHHHH
Confidence 457899999999999999999999999999999985331 1 144 899999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
.||+.++.++.|+|+++
T Consensus 592 ~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 592 LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HhccCcccCceeeeeeC
Confidence 99999999998888763
No 88
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.43 E-value=3.5e-07 Score=87.60 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=68.8
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEE-EEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~V-rI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
..|||+||..++.+.-|-++|+.||.|... .|+++.+++ ..++|+||.|++.|.+.+|++.+
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg-----------------~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTG-----------------NPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCC-----------------CCCCCeEEechhHHHHHHHHHHh
Confidence 579999999999999999999999987653 444443221 13889999999999999999999
Q ss_pred cCCCCCCCceEEEEeeecCCC
Q 009228 368 NDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~~~~k 388 (539)
|++.+..+.+.|..+.+...|
T Consensus 160 ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccchhcCCceEEEEEEecCCC
Confidence 999998899999998765544
No 89
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.43 E-value=6.9e-07 Score=89.90 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=69.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
...+|+|.||++.++.++|+++|..||.++.+.|.|++. +. ..|+|-|.|+..++|++||+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-----------G~-------s~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-----------GR-------SLGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-----------CC-------CCccceeeecchHhHHHHHHH
Confidence 345899999999999999999999999999999988642 22 267899999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.+.-|++.++..
T Consensus 144 ~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 144 YNGVALDGRPMKIEIISS 161 (243)
T ss_pred hcCcccCCceeeeEEecC
Confidence 999888888888887754
No 90
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.35 E-value=1.1e-06 Score=88.15 Aligned_cols=86 Identities=21% Similarity=0.206 Sum_probs=72.0
Q ss_pred hhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 282 ~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
...+++.+.|||+|+.+.+|.++|+..|+.||.|+.|.|..++..+ ..||||||||++.+.++
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~-----------------~~k~~~yvef~~~~~~~ 157 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG-----------------HPKGFAYVEFSSYELVE 157 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCC-----------------CcceeEEEecccHhhhH
Confidence 3567788999999999999999999999999999999996654311 14899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeec
Q 009228 362 KAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 362 kAv~~LN~~~~~~~glrV~l~~~~ 385 (539)
+|++ ||+..+.+..+.|.....+
T Consensus 158 ~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 158 EAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred HHhh-cCCcccccccceeeeeeee
Confidence 9999 9999987777766665444
No 91
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.3e-06 Score=97.35 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=65.0
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
...|+|+|||+.++..+|++||..||.|++||| |+. + -....+|||||+|-+..+|..|++.|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRl--PKK-------------~--~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRL--PKK-------------I--GKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeecc--chh-------------h--cchhhccceeeeccCcHHHHHHHHhh
Confidence 457999999999999999999999999999999 321 1 11235899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
..+-++++-|-+.++.
T Consensus 676 ~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAK 691 (725)
T ss_pred cccceechhhheehhc
Confidence 9887777666555543
No 92
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.33 E-value=1.4e-06 Score=84.97 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=67.4
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhc-CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~f-G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.--+||..++...-+.+|..+|.+| |.|.++|+-+.+. ...+||||||||++.|.|+=|.+.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkr-----------------TGNSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKR-----------------TGNSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccc-----------------cCCcCceEEEEeccHHHHHHHHHH
Confidence 4468999999999999999999998 7888888854321 123599999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009228 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~ 385 (539)
||+-.+.+.=|.+.++-..
T Consensus 112 MNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 112 MNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hhhhhhhhheeeeEEeCch
Confidence 9998888888888888654
No 93
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=6.4e-07 Score=91.01 Aligned_cols=69 Identities=26% Similarity=0.280 Sum_probs=61.7
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
.|||+|||.++++.+|+.+|++||+|..+.|+ |.|+||..|+...|+.||..|++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 58999999999999999999999999999995 66899999999999999999999
Q ss_pred CCCCCCceEEEEee
Q 009228 370 EGNWRSGLRVRLML 383 (539)
Q Consensus 370 ~~~~~~glrV~l~~ 383 (539)
-.+.+..++|+-..
T Consensus 59 YtLhg~nInVeaSk 72 (346)
T KOG0109|consen 59 YTLHGVNINVEASK 72 (346)
T ss_pred ceecceEEEEEecc
Confidence 88777666665543
No 94
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.3e-06 Score=90.67 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=67.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
....|||--|..-+|.|+|+-||+.||.|.++.|+++..++.+ --||||||++.|++++|.=.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds-----------------LqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS-----------------LQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch-----------------hheeeeeecchhhHHHHHhh
Confidence 3468999999999999999999999999999999987643321 34899999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009228 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~glrV~l~ 382 (539)
|++..+..+-+.|.+.
T Consensus 301 MdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFS 316 (479)
T ss_pred hcceeeccceEEeehh
Confidence 9998887777777664
No 95
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=9.9e-07 Score=96.00 Aligned_cols=72 Identities=28% Similarity=0.446 Sum_probs=61.8
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...+||+|-|||.++++++|.++|+.||+|+.|+.-. ..++.+||||-|+-+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----------------------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----------------------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----------------------ccCceEEEEEeehHhHHHHH
Confidence 56789999999999999999999999999999988721 12678999999999999999
Q ss_pred HHHcCCCCCCCceE
Q 009228 365 AELNDEGNWRSGLR 378 (539)
Q Consensus 365 ~~LN~~~~~~~glr 378 (539)
++||..++.++-++
T Consensus 130 k~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhhhhhc
Confidence 99998776655433
No 96
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=3.3e-06 Score=85.01 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=71.5
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
+.-+.|.|||--||.+....+|...|-.||.|.+.++..|+.++. +|.|+||.|++..+|+.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ-----------------SKCFGFVSfDNp~SaQaA 343 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ-----------------SKCFGFVSFDNPASAQAA 343 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc-----------------ccceeeEecCCchhHHHH
Confidence 445789999999999999999999999999999999987765432 388999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009228 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~ 383 (539)
|..||+-.+.-+-|+|.|..
T Consensus 344 IqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 344 IQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred HHHhcchhhhhhhhhhhhcC
Confidence 99999988777767766543
No 97
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.10 E-value=2.8e-05 Score=84.87 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=66.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..|.|+|.+|...+-..+|+.||++||+|.-..|+... |+ . +.+.|+||++.+.++|.+||+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa----------Rs---P----GaRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA----------RS---P----GARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecC----------CC---C----CcceeEEEEecchHHHHHHHHH
Confidence 35889999999998899999999999999988886432 11 1 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
|..+++.++-|.|.-+.
T Consensus 467 LHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 467 LHRTELHGRMISVEKAK 483 (940)
T ss_pred hhhhhhcceeeeeeecc
Confidence 99999888766666543
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=5.7e-06 Score=81.90 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=56.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
.|||++|++.+.+.+|++||..||.|..|.|. .||+||+|++.-+|+.||-.||+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 58999999999999999999999999999882 56899999999999999999999
Q ss_pred CCCCCCc
Q 009228 370 EGNWRSG 376 (539)
Q Consensus 370 ~~~~~~g 376 (539)
..+.+..
T Consensus 58 ~~l~~e~ 64 (216)
T KOG0106|consen 58 KELCGER 64 (216)
T ss_pred ceeccee
Confidence 8876654
No 99
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.99 E-value=2.8e-06 Score=83.59 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=66.5
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.|||||.||-..+++|-|.|+|=..|.|..|.|...++ . ..| ||||+|+++-+..-|++.|
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-----------~-------~~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-----------Q-------EQK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-----------C-------CCc-eeeeecccccchhhhhhhc
Confidence 58999999999999999999999999999998843322 1 125 8999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009228 368 NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~ 384 (539)
|+.++.++.++|.+...
T Consensus 70 ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCG 86 (267)
T ss_pred ccchhccchhhcccccC
Confidence 99999888888776543
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.96 E-value=2e-05 Score=81.89 Aligned_cols=83 Identities=22% Similarity=0.164 Sum_probs=64.2
Q ss_pred hhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeE--------EEEeCCCCCCCCCCCCCccccccCcccCccceEEEE
Q 009228 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVE 353 (539)
Q Consensus 282 ~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~--------VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVE 353 (539)
..+......|||.|||.|+|.+++.++|++||-|.. |.|.++ ....-||=|+|+
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd------------------~~G~lKGDaLc~ 189 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD------------------NQGKLKGDALCC 189 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec------------------CCCCccCceEEE
Confidence 344556677999999999999999999999998743 222221 112338889999
Q ss_pred eCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009228 354 YESVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 354 Fet~E~AekAv~~LN~~~~~~~glrV~l~ 382 (539)
|-..|+++-|++.|++..+.+..|+|..+
T Consensus 190 y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 190 YIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred eecccHHHHHHHHhCcccccCcEEEEehh
Confidence 99999999999999998877666666655
No 101
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=3e-05 Score=81.03 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=62.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.-..|||..+..|.+++||+.+|+.||+|..+.+.+..+ ..+.|||+||||++..+...||..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-----------------~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----------------CCCccceeeEEeccccchHHHhhh
Confidence 346899999999999999999999999999999976421 123599999999999999999999
Q ss_pred HcCCCCCCCceEE
Q 009228 367 LNDEGNWRSGLRV 379 (539)
Q Consensus 367 LN~~~~~~~glrV 379 (539)
||--.+.+.=|||
T Consensus 272 MNlFDLGGQyLRV 284 (544)
T KOG0124|consen 272 MNLFDLGGQYLRV 284 (544)
T ss_pred cchhhcccceEec
Confidence 9876654443443
No 102
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=9.9e-06 Score=81.69 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=60.8
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
.-++|.|||+=|...-.+||++++|..||.|..+.+++- .....||||||.|.+--+|+.||
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg------------------~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG------------------PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC------------------CCCCCCCceEEEeccchHHHHHH
Confidence 346789999999999999999999999999999999753 22235999999999999999999
Q ss_pred HHHcCCCC
Q 009228 365 AELNDEGN 372 (539)
Q Consensus 365 ~~LN~~~~ 372 (539)
..|.+.+.
T Consensus 78 ~aLHgSqT 85 (371)
T KOG0146|consen 78 NALHGSQT 85 (371)
T ss_pred HHhccccc
Confidence 99998653
No 103
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=5.2e-05 Score=67.23 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=40.0
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
+.|.|.|+..+++.++|+++|+.||.|..|.+... -..|||-|.+.++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHHHHHH
Confidence 57899999999999999999999999999988431 2259999999999999999887
Q ss_pred CC
Q 009228 369 DE 370 (539)
Q Consensus 369 ~~ 370 (539)
..
T Consensus 59 ~~ 60 (105)
T PF08777_consen 59 EA 60 (105)
T ss_dssp HT
T ss_pred hc
Confidence 66
No 104
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.83 E-value=2e-05 Score=82.12 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=54.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
+.++|||++|++++++|.|++.|+.||+|..+.|+++..++ | .+||.||+|++.+...++|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~-------r----------srgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTG-------R----------SRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCC-------C----------cccccceecCCCcchheeecc
Confidence 57899999999999999999999999999999998875431 2 289999999999888877663
No 105
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.73 E-value=8.7e-05 Score=73.38 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=99.7
Q ss_pred HHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccch-hhHHHhhc-----CHHHHHHhhhcCCceE-----Ee
Q 009228 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAIIS-----SHSHLASVLRKSSKLV-----VS 266 (539)
Q Consensus 198 ~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasF-kKmK~Lt~-----d~~~V~~ALr~S~~Le-----Vs 266 (539)
.+++.++|...||...=+-|--..+..++..+-||-.+.+.+- .-+++|.. ..-.|..|-.+|..+. +.
T Consensus 23 ~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v 102 (221)
T KOG4206|consen 23 KDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFV 102 (221)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceec
Confidence 4667788888888776444444444456777889988775543 34444421 2345555555554321 22
Q ss_pred eccccc--ccC----CCCcch----------------hhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCC
Q 009228 267 EDGKKI--KRQ----NPLTES----------------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ 324 (539)
Q Consensus 267 edg~kV--RR~----~Pl~e~----------------~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~ 324 (539)
+..++. ++. ++...+ +.......++|+.|||.+++.+.|..+|..|.-.+.||++..+
T Consensus 103 ~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 103 EKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred cccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 222221 111 111100 1113356899999999999999999999999999999997431
Q ss_pred CCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCC
Q 009228 325 TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373 (539)
Q Consensus 325 ~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~ 373 (539)
++.|||||.+...|.-|...|.+-.+-
T Consensus 183 ----------------------~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 183 ----------------------SGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred ----------------------CceeEEecchhhhhHHHhhhhccceec
Confidence 668999999999999998888776544
No 106
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.72 E-value=0.00012 Score=72.49 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=61.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
-|||||.|||.|+..-+|-.+|..|---+...|.+. .|..+. -|-+|||+|.+..+|+.|+.+|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T----------sk~~~~------~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT----------SKGDQV------CKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeec----------cCCCcc------ccceEEEEecchHHHHHHHHHh
Confidence 589999999999999999999998754444444221 121121 1578999999999999999999
Q ss_pred cCCCCCCC---ceEEEEeee
Q 009228 368 NDEGNWRS---GLRVRLMLR 384 (539)
Q Consensus 368 N~~~~~~~---glrV~l~~~ 384 (539)
|+.+++.. .|+|+++..
T Consensus 98 NGvrFDpE~~stLhiElAKS 117 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAKS 117 (284)
T ss_pred cCeeeccccCceeEeeehhc
Confidence 99887653 577777653
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.71 E-value=9.2e-05 Score=80.04 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=50.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..-+|-+++||+.||+++|.+||+-.--|.. -|+.+ .+.|. + ..|-|||.|++.|.|++||..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~--------~d~rg-R-------~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLP--------MDQRG-R-------PTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCccccc-ceeee--------ccCCC-C-------cccceEEEecCHHHHHHHHHH
Confidence 3457889999999999999999997643333 33222 23232 2 256799999999999999984
Q ss_pred HcCCCCCCCceE
Q 009228 367 LNDEGNWRSGLR 378 (539)
Q Consensus 367 LN~~~~~~~glr 378 (539)
- .+.+..+-+.
T Consensus 165 h-re~iGhRYIE 175 (510)
T KOG4211|consen 165 H-RENIGHRYIE 175 (510)
T ss_pred H-HHhhccceEE
Confidence 3 3344443333
No 108
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.66 E-value=0.00016 Score=75.75 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=70.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+.-||||-+|+..+|++.|.++|.+||.|+.= +.+++. .+...+-+ ...+.|+-|.|.|++.-.|+.||+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrn-----K~t~kP---ki~~y~dk-eT~~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRN-----KRTGKP---KIKIYTDK-ETGAPKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccC-----CCCCCc---chhccccc-cccCcCCceeeeecChhhhhhhhh
Confidence 345699999999999999999999999988642 222111 01111111 233568999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~~ 387 (539)
.+++..+.++.|+|.++.++..
T Consensus 135 ~~agkdf~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 135 WFAGKDFCGNTIKVSLAERRTG 156 (351)
T ss_pred hhccccccCCCchhhhhhhccC
Confidence 9999999998999988876654
No 109
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.52 E-value=0.00057 Score=58.43 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=46.5
Q ss_pred eeEEEecCCCCCCHH----HHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQ----NLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 289 rTVyV~nLP~d~t~e----~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
..|||.|||.+.... -|+.++.-|| .|..|. .+.|+|-|.+.|.|++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 468999999988765 4778888887 555542 34699999999999999
Q ss_pred HHHHcCCCCCCCceEEEEe
Q 009228 364 IAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~ 382 (539)
.+.|+++...++.+.|...
T Consensus 56 ~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp HHHHTT--SSSS--EEESS
T ss_pred HHhhcccccccceEEEEEc
Confidence 9999999988888777654
No 110
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00023 Score=55.49 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=42.4
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
++|.|.|++.+.. +.|.+.|..||+|..+.+- . .+.++||.|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---------------------CCcEEEEEECCHHHHHhhC
Confidence 6899999987654 5666799999999999882 0 1447999999999999996
No 111
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.48 E-value=5.2e-05 Score=82.76 Aligned_cols=80 Identities=28% Similarity=0.292 Sum_probs=66.6
Q ss_pred hhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
.++.+.||||+--|...++.-+|.+||+.+|+|..|+|+.++.+. ..||.|||||.+.+....
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~-----------------rskgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSR-----------------RSKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccch-----------------hhcceeEEEEecccchhh
Confidence 356778999999999999999999999999999999999775421 138899999999999999
Q ss_pred HHHHHcCCCCCCCceEEE
Q 009228 363 AIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~ 380 (539)
||. |+|+.+.+..+.|.
T Consensus 237 aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 237 AIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred Hhh-hcCCcccCceeEec
Confidence 996 99988665444443
No 112
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.48 E-value=0.00038 Score=75.42 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=47.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..-|-+++||+++|++||.+||+-|+ |+++.+.+. . +| +.|-|||||+++|++++|+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~----------Gr-------~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--N----------GR-------PSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--C----------CC-------cCcceEEEeechHHHHHHHHh
Confidence 34667899999999999999999985 777666332 1 12 367799999999999999994
No 113
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.43 E-value=0.00017 Score=80.82 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=76.9
Q ss_pred ecccccccCCCCcch----------hhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCcc
Q 009228 267 EDGKKIKRQNPLTES----------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRS 336 (539)
Q Consensus 267 edg~kVRR~~Pl~e~----------~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~ 336 (539)
.|-..+.|..++++. +.-+-+...|||.||+..++++.|...|+.||.|..|+|+.+++... +
T Consensus 143 ~d~~~s~r~~~~p~~~~~s~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE------k- 215 (877)
T KOG0151|consen 143 SDSAVSSRFDPLPSRFDPSGRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE------K- 215 (877)
T ss_pred cCcchhhccCCCccccCCCCCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhh------h-
Confidence 334456666666542 12234557899999999999999999999999999999999875321 1
Q ss_pred ccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009228 337 AKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 337 ~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~ 382 (539)
. ..+.|+||-|-+..+|++|+++|++..+....|++.+.
T Consensus 216 ~-------r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 216 R-------RERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred c-------cccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 1 12679999999999999999999987765555555544
No 114
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.36 E-value=0.00016 Score=71.66 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=51.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
..||||-||..++|+++|+.+|+.|--...++|+-.. ....|||+|++.|.|..|+..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~---------------------g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG---------------------GMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC---------------------CcceEeecHHHHHHHHHHHHHh
Confidence 3589999999999999999999999877777774210 1446999999999999999988
Q ss_pred cCCC
Q 009228 368 NDEG 371 (539)
Q Consensus 368 N~~~ 371 (539)
.+..
T Consensus 269 qg~~ 272 (284)
T KOG1457|consen 269 QGNL 272 (284)
T ss_pred hcce
Confidence 7643
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.34 E-value=0.00059 Score=72.56 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=63.5
Q ss_pred ceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
...|.|.||.+ .+|.+.|-.+|+.||+|.+|.|++.+ |-.|+|.|.+...|+-|++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 46788899865 57999999999999999999998642 44699999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009228 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~glrV~l~ 382 (539)
|++..+|++.|||.+-
T Consensus 355 L~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLS 370 (492)
T ss_pred hhcceecCceEEEeec
Confidence 9999999988877764
No 116
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.29 E-value=0.0011 Score=58.08 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=52.1
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhc--CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~f--G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.||-|+|+|...|.++|.+++.+. |+..-+-+ |.|.++. .|.|||||.|.+.+.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YL----------PiDf~~~-------~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYL----------PIDFKNK-------CNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEe----------eeeccCC-------CceEEEEEEcCCHHHHHHHHHH
Confidence 489999999999999999988763 44444443 4444432 3689999999999999999999
Q ss_pred HcCCC
Q 009228 367 LNDEG 371 (539)
Q Consensus 367 LN~~~ 371 (539)
+++..
T Consensus 65 f~g~~ 69 (97)
T PF04059_consen 65 FNGKK 69 (97)
T ss_pred HcCCc
Confidence 99865
No 117
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.00017 Score=71.64 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=58.7
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....+.++|.+|...+.+.+|+++|..+|.+..+.+. .+++||+|++.++|.+|+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------------------------~~~~~v~Fs~~~da~ra~ 150 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------------------------RNFAFVEFSEQEDAKRAL 150 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------------------------ccccceeehhhhhhhhcc
Confidence 3456788999999999999999999999998555441 457999999999999999
Q ss_pred HHHcCCCCCCCceEE
Q 009228 365 AELNDEGNWRSGLRV 379 (539)
Q Consensus 365 ~~LN~~~~~~~glrV 379 (539)
+.|++..+.++-|.+
T Consensus 151 ~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 151 EKLDGKKLNGRRISV 165 (216)
T ss_pred hhccchhhcCceeee
Confidence 999998876665555
No 118
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.92 E-value=0.002 Score=70.91 Aligned_cols=78 Identities=29% Similarity=0.368 Sum_probs=58.3
Q ss_pred ceeEEEecCCCC--CCHH----HHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 288 SRIVVAENLPED--HCHQ----NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 288 ~rTVyV~nLP~d--~t~e----~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
...|+|.|+|.- ...+ -|.++|+++|+|.++-+ | .+... +.|||+|+||++..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~--P--------~~e~g--------gtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY--P--------IDEEG--------GTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee--c--------cCccC--------CeeeEEEEEecChhhHH
Confidence 457889998853 2233 46789999999888776 3 22221 24999999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEEEEee
Q 009228 362 KAIAELNDEGNWRS-GLRVRLML 383 (539)
Q Consensus 362 kAv~~LN~~~~~~~-glrV~l~~ 383 (539)
+||+.|||.++..+ .+.|+++.
T Consensus 120 ~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HHHHhcccceecccceEEeehhh
Confidence 99999999988766 46666653
No 119
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.84 E-value=0.002 Score=66.70 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=53.9
Q ss_pred ceeEE-EecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVV-AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVy-V~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++| |.+|+.++++++|.+.|..||.|..|++.... .++ ..+|||||+|.+..++.+|+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~----------~s~-------~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE----------ESG-------DSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC----------Ccc-------chhhhhhhhhhhchhHHHHhhc
Confidence 45666 99999999999999999999999999994322 222 2389999999999999888875
Q ss_pred HcCCCCCC
Q 009228 367 LNDEGNWR 374 (539)
Q Consensus 367 LN~~~~~~ 374 (539)
....+.+
T Consensus 247 -~~~~~~~ 253 (285)
T KOG4210|consen 247 -QTRSIGG 253 (285)
T ss_pred -ccCcccC
Confidence 4444333
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.80 E-value=0.0025 Score=71.55 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=59.6
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCe-eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V-~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
+.|-+.|+|++++.+||.+||..|-.+ .+|+|++.. .....|-|.|-|++.|+|..|+..|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd------------------~G~pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND------------------DGVPTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC------------------CCCcccceeEeecCHHHHHhhhhcc
Confidence 467789999999999999999999644 456665431 1123677999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 009228 368 NDEGNWRSGLRVRL 381 (539)
Q Consensus 368 N~~~~~~~glrV~l 381 (539)
+++.+.-+.++|+|
T Consensus 930 ~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRI 943 (944)
T ss_pred ccCcccceeEEEEe
Confidence 99998777777665
No 121
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.80 E-value=0.0034 Score=65.51 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=58.5
Q ss_pred hccceeEEEecCCCCCCHHH------HHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHH
Q 009228 285 ELQSRIVVAENLPEDHCHQN------LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~------L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (539)
-++..-|||-+|+..+..|+ -.++|++||.|+.|-|-+-. ++..-. ....-+||+|.+.|
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt------~s~nst--------~~h~gvYITy~~ke 176 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT------SSLNST--------ASHAGVYITYSTKE 176 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc------cccccc--------cccceEEEEecchH
Confidence 34566789999988776554 25899999999999884321 111110 00112599999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEE
Q 009228 359 LAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 359 ~AekAv~~LN~~~~~~~glrV~l 381 (539)
||.+||.+.++..++++-|+...
T Consensus 177 dAarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 177 DAARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred HHHHHHHHhccccccCceEeeec
Confidence 99999999999887776555443
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.77 E-value=0.0016 Score=65.75 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=58.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
++-.||.+.|-.+++.+-|.+.|.+|=.....+++++. |.+|+ |||.||-|.+.+++..|+.+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk----------RTgKS-------kgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK----------RTGKS-------KGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccc----------ccccc-------ccceeeeecCHHHHHHHHHh
Confidence 44578999999999999999999999887777776653 44443 89999999999999999999
Q ss_pred HcCCCCCC
Q 009228 367 LNDEGNWR 374 (539)
Q Consensus 367 LN~~~~~~ 374 (539)
||+....-
T Consensus 252 m~gkyVgs 259 (290)
T KOG0226|consen 252 MNGKYVGS 259 (290)
T ss_pred hccccccc
Confidence 99876433
No 123
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.011 Score=57.35 Aligned_cols=72 Identities=22% Similarity=0.184 Sum_probs=60.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.-.|+|.+||...++++|++.+.+.|.|....+.++ |+..|||...|+++-||..|
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------------------------g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------------------------GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------------------------cceeeeeeehhhHHHHHHhh
Confidence 347999999999999999999999999988887533 46889999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
+++.+.-.|+.+.+-.
T Consensus 171 d~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 171 DDQKFRSEGETAYIRV 186 (241)
T ss_pred ccccccCcCcEeeEEe
Confidence 9988766676655543
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.43 E-value=0.19 Score=57.21 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=45.9
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeE-EEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~-VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.-.|||+.||..+++.++.++|+..-.|+. |.|.+- |.+.+ ++-|||+|..++++.+|+.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-------P~~~~-----------~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-------PTDLL-----------RPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-------Ccccc-----------cchhhheeccccccchhhh
Confidence 357999999999999999999998777776 666431 22222 5569999999888777765
No 125
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.10 E-value=0.0043 Score=68.40 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=67.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
....|||.+||...++++++|+.+.||.++..+++.+..+ .-+|||||.||-+......|++.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~-----------------g~skg~af~ey~dpsvtd~A~ag 350 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT-----------------GNSKGFAFCEYCDPSVTDQAIAG 350 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc-----------------ccccceeeeeeeCCcchhhhhcc
Confidence 3457899999999999999999999999999999865321 12599999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+.++..+.|-|..+.
T Consensus 351 LnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 351 LNGMQLGDKKLVVQRAI 367 (500)
T ss_pred cchhhhcCceeEeehhh
Confidence 99998877777666554
No 126
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.021 Score=62.60 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=51.4
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccc---eEEEEeCCHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL---HAFVEYESVELAE 361 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG---~AFVEFet~E~Ae 361 (539)
..-++.|||++||.+++++.|...|..||.|+.=. |... ... ..+-.|| |+|+.|+++....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdW---P~k~-----------~~~-~~~ppkGs~~YvflvFe~E~sV~ 320 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDW---PGKA-----------NSR-GRAPPKGSYGYVFLVFEDERSVQ 320 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeec---CCCc-----------ccc-ccCCCCCcccEEEEEecchHHHH
Confidence 45678999999999999999999999999975432 2110 111 1223466 9999999999888
Q ss_pred HHHHHHcC
Q 009228 362 KAIAELND 369 (539)
Q Consensus 362 kAv~~LN~ 369 (539)
+-|..+-.
T Consensus 321 ~Ll~aC~~ 328 (520)
T KOG0129|consen 321 SLLSACSE 328 (520)
T ss_pred HHHHHHhh
Confidence 87776543
No 127
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.98 E-value=0.074 Score=56.02 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=80.8
Q ss_pred hhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCC----ceEEeecc----------cccccCC-C----------
Q 009228 223 FILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS----KLVVSEDG----------KKIKRQN-P---------- 277 (539)
Q Consensus 223 ~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~----~LeVsedg----------~kVRR~~-P---------- 277 (539)
++..+.+|-+.-+.+|.|-|- ...++....|..+. +|.|.... ++.+++. .
T Consensus 173 KlYrd~~G~lKGDaLc~y~K~----ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k 248 (382)
T KOG1548|consen 173 KLYRDNQGKLKGDALCCYIKR----ESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQK 248 (382)
T ss_pred EEEecCCCCccCceEEEeecc----cHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHh
Confidence 356677888888888888663 33445555555443 34444221 0111000 0
Q ss_pred ----Ccch--hhhhccceeEEEecCC--C--CCC-------HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCcccccc
Q 009228 278 ----LTES--DLEELQSRIVVAENLP--E--DHC-------HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSE 340 (539)
Q Consensus 278 ----l~e~--~~~~~~~rTVyV~nLP--~--d~t-------~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~ 340 (539)
.++. .......+||+++|+= + +.+ .++|++-.++||.|.+|.|+ ++
T Consensus 249 ~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~---------------- 311 (382)
T KOG1548|consen 249 LLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR---------------- 311 (382)
T ss_pred hcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc----------------
Confidence 0001 1122346899999973 1 222 35677778999999999986 21
Q ss_pred CcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCce
Q 009228 341 GMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (539)
Q Consensus 341 g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~gl 377 (539)
.+.|.+-|.|.+.++|..||+.|+|.-+.++.|
T Consensus 312 ----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 312 ----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred ----CCCceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 137789999999999999999999876555443
No 128
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.92 E-value=0.0052 Score=65.58 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=50.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.++.|.++|||.++++++|-+++..||+|.++.++.- |.-|||||.++++|...|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----------------------knQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----------------------KNQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----------------------chhhhhhhcchhhhhheeec
Confidence 5789999999999999999999999999999988531 34599999999999885554
Q ss_pred HcC
Q 009228 367 LND 369 (539)
Q Consensus 367 LN~ 369 (539)
+..
T Consensus 84 y~~ 86 (492)
T KOG1190|consen 84 YTS 86 (492)
T ss_pred ccc
Confidence 443
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.88 E-value=0.036 Score=44.91 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=44.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhc---CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAV---GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~f---G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
..-.|+|+|++ +.+.++|+.+|..| ....+|..+.|. .|-|.|.+.+.|.+|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------------------------ScNvvf~d~~~A~~A 58 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------------------------SCNVVFKDEETAARA 58 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------------------------cEEEEECCHHHHHHH
Confidence 34589999994 47889999999998 235677776431 488999999999999
Q ss_pred HHHH
Q 009228 364 IAEL 367 (539)
Q Consensus 364 v~~L 367 (539)
|..|
T Consensus 59 L~~L 62 (62)
T PF10309_consen 59 LVAL 62 (62)
T ss_pred HHcC
Confidence 9864
No 130
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.68 E-value=0.0068 Score=61.32 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=45.4
Q ss_pred HHHHHHHhh-hcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEE
Q 009228 302 HQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 302 ~e~L~e~Fs-~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~ 380 (539)
.|+|-..|+ +||+|+.+.||.... ..+ +|.+||.|..+|+|++|++.||+.-+.++.+...
T Consensus 82 yEd~f~E~~~kygEiee~~Vc~Nl~----------------~hl--~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELNVCDNLG----------------DHL--VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccc----------------hhh--hhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 345555555 899999998874311 122 7889999999999999999999876555555444
Q ss_pred E
Q 009228 381 L 381 (539)
Q Consensus 381 l 381 (539)
+
T Consensus 144 ~ 144 (260)
T KOG2202|consen 144 L 144 (260)
T ss_pred e
Confidence 4
No 131
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.073 Score=58.55 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=52.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhh-hcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs-~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..|||||++||.-++-++|-.||+ .||-|..|-|-.| .+- |. .||-+=|+|++..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD----------~k~-KY------PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD----------PKL-KY------PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC----------ccc-CC------CCCcceeeecccHHHHHHHh
Confidence 358999999999999999999999 7999999999322 111 11 48899999999999999998
No 132
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.51 E-value=0.03 Score=49.48 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=45.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..+.|.|=|||.. ....|.+.|++||+|....-+.... +++ .. ...+....+..|.|++..+|++||.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~--~~~-------~~-~~~~~~~NWi~I~Y~~~~~A~rAL~- 72 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSS--SGI-------NP-YPIPSGGNWIHITYDNPLSAQRALQ- 72 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG--------------------E-CCTTEEEEEESSHHHHHHHHT-
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccc--ccc-------cc-ccCCCCCCEEEEECCCHHHHHHHHH-
Confidence 4567999999988 5677888999999997775211000 000 00 0122346789999999999999999
Q ss_pred HcCCCCC
Q 009228 367 LNDEGNW 373 (539)
Q Consensus 367 LN~~~~~ 373 (539)
.|+..+.
T Consensus 73 ~NG~i~~ 79 (100)
T PF05172_consen 73 KNGTIFS 79 (100)
T ss_dssp TTTEEET
T ss_pred hCCeEEc
Confidence 5766543
No 133
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.46 E-value=0.035 Score=61.45 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=43.3
Q ss_pred HHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCC
Q 009228 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (539)
Q Consensus 303 e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~ 375 (539)
|+|+.-+++||.|.+|.|=++- .. . .....-|..||||.+.|++++|.++|+|.++..+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~--~~------~------~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPY--PD------E------NPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred HHHHHHhcccCceeEEecCCCC--CC------C------CcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 4555667789999999994431 00 0 1122367899999999999999999999886654
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.28 E-value=0.07 Score=50.09 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=56.7
Q ss_pred hccceeEEEecCCCCCC-HHH---HHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHH
Q 009228 285 ELQSRIVVAENLPEDHC-HQN---LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t-~e~---L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~A 360 (539)
+..-.||+|+-|..++. .+| +....+.||.|.+|.+|- +-.|.|.|++..+|
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------------------rqsavVvF~d~~SA 138 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------------------RQSAVVVFKDITSA 138 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------------------CceEEEEehhhHHH
Confidence 44557999998887764 344 445568899999999862 44699999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEeeecCCC
Q 009228 361 EKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 361 ekAv~~LN~~~~~~~glrV~l~~~~~~k 388 (539)
=+||..+... .-+.-++.....+.+.|
T Consensus 139 C~Av~Af~s~-~pgtm~qCsWqqrFMsk 165 (166)
T PF15023_consen 139 CKAVSAFQSR-APGTMFQCSWQQRFMSK 165 (166)
T ss_pred HHHHHhhcCC-CCCceEEeecccccccC
Confidence 9999988763 23344555555554443
No 135
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.27 E-value=0.14 Score=56.33 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=5.1
Q ss_pred hHHHHHHHhhhh
Q 009228 195 DESIQKVLNQVE 206 (539)
Q Consensus 195 ~e~~~kI~kQvE 206 (539)
.+-+..|.+||.
T Consensus 492 ~dgR~~LmaqIR 503 (569)
T KOG3671|consen 492 GDGRDALMAQIR 503 (569)
T ss_pred cccHHHHHHHHH
Confidence 333444444443
No 136
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.22 E-value=0.012 Score=59.65 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=57.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.-.||+.+||..+...-|++||+.||+|-+|-+-....+... ...|.++.....+ --+.|||.+...|+++.+.|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~--~r~~~~~n~~~~y---~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRA--ARKRKGGNYKKLY---SEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHH--HHhhcCCCccccc---hhHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999988432211000 0000011100001 11679999999999999999
Q ss_pred cCCCCCCC
Q 009228 368 NDEGNWRS 375 (539)
Q Consensus 368 N~~~~~~~ 375 (539)
|+..+.++
T Consensus 149 nn~~Iggk 156 (278)
T KOG3152|consen 149 NNTPIGGK 156 (278)
T ss_pred CCCccCCC
Confidence 99887654
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.87 E-value=0.069 Score=56.91 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=44.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhh-----hcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFS-----AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs-----~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
-.|-.++||+|++..++.+||. .-|...-+.|.++. .| ..|-|||.|..+|+|++|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd---------gr----------pTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD---------GR----------PTGDAFVLFACEEDAQFA 222 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC---------CC----------cccceEEEecCHHHHHHH
Confidence 3566789999999999999997 33444445554431 11 266799999999999999
Q ss_pred HHH
Q 009228 364 IAE 366 (539)
Q Consensus 364 v~~ 366 (539)
|.+
T Consensus 223 L~k 225 (508)
T KOG1365|consen 223 LRK 225 (508)
T ss_pred HHH
Confidence 974
No 138
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.80 E-value=0.082 Score=49.73 Aligned_cols=74 Identities=22% Similarity=0.208 Sum_probs=50.2
Q ss_pred ceeEEEecCC----CC-CC----HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHH
Q 009228 288 SRIVVAENLP----ED-HC----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (539)
Q Consensus 288 ~rTVyV~nLP----~d-~t----~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (539)
.-||+|.=+. ++ .- .++|.+.|..||+|.-||+... .-+|+|.+-+
T Consensus 27 DaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------------------------~mwVTF~dg~ 81 (146)
T PF08952_consen 27 DATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------------------------TMWVTFRDGQ 81 (146)
T ss_dssp T-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------------------------CEEEEESSCH
T ss_pred CceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------------------------eEEEEECccH
Confidence 4577776544 11 11 2478889999999999998632 3679999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeeecCC
Q 009228 359 LAEKAIAELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 359 ~AekAv~~LN~~~~~~~glrV~l~~~~~~ 387 (539)
.|-+|+. |++.++.++-|+|++..+...
T Consensus 82 sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 82 SALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 9999998 999988777777777655444
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.75 E-value=0.021 Score=65.73 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=62.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
...|+|+|.|+..|.+.|+.+|+++|.+++++++. .|.+| .||-|||+|.++.+|.+++...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt-----------~r~gk-------pkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT-----------VRAGK-------PKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh-----------hhccc-------cccceeccCCCcchhhhhcccc
Confidence 45799999999999999999999999999998742 23333 4888999999999999999877
Q ss_pred cCCCCCCCceEEEEeee
Q 009228 368 NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~ 384 (539)
+...+-.+.+.|.+-..
T Consensus 798 d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhhhcCccccccCC
Confidence 66554455566665443
No 140
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.58 E-value=0.66 Score=49.61 Aligned_cols=72 Identities=26% Similarity=0.345 Sum_probs=55.9
Q ss_pred eeEEEe--cCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 289 RIVVAE--NLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 289 rTVyV~--nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..|++. |--+-+|.|-|-.|...+|+|.+|-|.+. +-.-|.|||++.+.|++|-+.
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----------------------ngVQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----------------------NGVQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----------------------cceeeEEeechhHHHHHHHhh
Confidence 344443 44467889999999999999999999642 123599999999999999999
Q ss_pred HcCCCCCCC--ceEEEEe
Q 009228 367 LNDEGNWRS--GLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~--glrV~l~ 382 (539)
||+..++-. .|+|+.+
T Consensus 179 lNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYA 196 (494)
T ss_pred cccccccccceeEEEEec
Confidence 999988765 3555544
No 141
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.53 E-value=0.14 Score=54.54 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=60.5
Q ss_pred cceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
+.+.+.|.+|..+ +.-+.|-.+|=.||.|++|.+++.+ .|.|.||..|.++.++||.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v~ 343 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAVT 343 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHHH
Confidence 3567889999865 5668899999999999999997421 4679999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
.||+..+.+..|.|.+.
T Consensus 344 hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 344 HLNNIPLFGGKLNVCVS 360 (494)
T ss_pred HhccCccccceEEEeec
Confidence 99999887766665543
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.34 E-value=0.078 Score=55.89 Aligned_cols=75 Identities=15% Similarity=0.060 Sum_probs=55.0
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG--~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.-.+||+||-+.+|.+||.+.....| .|..+.+...++ +..+||||+|...+..+.++.++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~-----------------NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRT-----------------NGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhccc-----------------CCcccceEEEEecchHHHHHHHH
Confidence 34789999999999999988887766 344444432221 22359999999999999999999
Q ss_pred HHcCCCCCCCceEE
Q 009228 366 ELNDEGNWRSGLRV 379 (539)
Q Consensus 366 ~LN~~~~~~~glrV 379 (539)
.|-...+.+..-.|
T Consensus 143 iLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTV 156 (498)
T ss_pred hcccceecCCCCee
Confidence 88877776654333
No 143
>PF12901 SUZ-C: SUZ-C motif; InterPro: IPR024642 The SUZ-C domain is a conserved motif found in one or more copies in several RNA-binding proteins []. It is always found at the C terminus of the protein and appears to be required for localization of the protein to specific subcellular structures. The domain was first characterised in the C.elegans protein SZY-20 which localizes to the centrosome. This domain is widely distributed in eukaryotes.
Probab=94.33 E-value=0.022 Score=40.81 Aligned_cols=15 Identities=60% Similarity=0.970 Sum_probs=13.6
Q ss_pred CCCCCCCCccccccC
Q 009228 516 GPRMPDGTRGFAMGR 530 (539)
Q Consensus 516 gprmpdgtrgf~~gr 530 (539)
+||+||||+||.|-|
T Consensus 20 ~P~gPd~~~gf~~~R 34 (34)
T PF12901_consen 20 QPRGPDGTWGFQQRR 34 (34)
T ss_pred cCCCCCCCccccccC
Confidence 789999999999876
No 144
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.94 E-value=0.035 Score=61.82 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=55.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhh-hcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs-~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
-+..|||.||=.-.|.-.|++++. .+|.|...+| |+ + |.+|||.|.+.++|-....
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk--------------I-------KShCyV~yss~eEA~atr~ 499 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK--------------I-------KSHCYVSYSSVEEAAATRE 499 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH--------------h-------hcceeEecccHHHHHHHHH
Confidence 467899999999999999999998 6889988877 21 1 6689999999999999999
Q ss_pred HHcCCCCCCC
Q 009228 366 ELNDEGNWRS 375 (539)
Q Consensus 366 ~LN~~~~~~~ 375 (539)
.|++.. |..
T Consensus 500 AlhnV~-WP~ 508 (718)
T KOG2416|consen 500 ALHNVQ-WPP 508 (718)
T ss_pred HHhccc-cCC
Confidence 999854 654
No 145
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.73 E-value=0.42 Score=54.85 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=27.4
Q ss_pred cceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009228 347 KLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 347 KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~~ 383 (539)
..|.|||.... .|.+.++.|++..+.++.+.|.++.
T Consensus 526 ~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 526 ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CCceEEEcChh-hHHHHHHHhccccccCCceEEEECC
Confidence 44789998754 5888999998877777777777664
No 146
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=93.54 E-value=0.05 Score=63.93 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=46.9
Q ss_pred hccCCCCceecccccchhhHHHhhcCHHHHHHhhhc-CCceEEeecccccccCC
Q 009228 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SSKLVVSEDGKKIKRQN 276 (539)
Q Consensus 224 i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~-S~~LeVsedg~kVRR~~ 276 (539)
+.-|.+|||-|.+||+.-.|--|..+.+.|..||.+ |.+|+|+.||+|||.+-
T Consensus 471 v~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRG 524 (989)
T PF09421_consen 471 VHPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRG 524 (989)
T ss_pred cCcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecC
Confidence 445789999999999999888888899999999875 77999999999999764
No 147
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=93.34 E-value=0.094 Score=55.92 Aligned_cols=75 Identities=12% Similarity=0.190 Sum_probs=54.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCC-eeE--EEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGS-VKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~-V~~--VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
.-.|-.++||++++.|+|.+||+.|-. |+. |.|+.... ....|-|||+|.++|+|..|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q------------------GrPSGeAFIqm~nae~a~aaa 341 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ------------------GRPSGEAFIQMRNAERARAAA 341 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC------------------CCcChhhhhhhhhhHHHHHHH
Confidence 347889999999999999999999863 444 66654321 123677999999999999998
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009228 365 AELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~ 382 (539)
....+.. .+...|+++
T Consensus 342 qk~hk~~--mk~RYiEvf 357 (508)
T KOG1365|consen 342 QKCHKKL--MKSRYIEVF 357 (508)
T ss_pred HHHHHhh--cccceEEEe
Confidence 8766544 234455554
No 148
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.24 E-value=0.024 Score=63.55 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=4.9
Q ss_pred hHHHHHHHhhhh
Q 009228 195 DESIQKVLNQVE 206 (539)
Q Consensus 195 ~e~~~kI~kQvE 206 (539)
++.+++|+.-++
T Consensus 239 ~e~Idrli~C~~ 250 (556)
T PF05918_consen 239 PESIDRLISCLR 250 (556)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 149
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=93.13 E-value=0.058 Score=33.31 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=12.5
Q ss_pred CcCccCCCCCCCCCCC
Q 009228 36 SFSRLNAKAPEFVPTR 51 (539)
Q Consensus 36 ~~~~~~~~~p~~~p~~ 51 (539)
..|+||..|+||||+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 4689999999999874
No 150
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.03 E-value=0.19 Score=51.99 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=43.3
Q ss_pred HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCC
Q 009228 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (539)
Q Consensus 302 ~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~ 375 (539)
++++++-.++||.|.+|-|..... .|.|. -.-.||||+..++|.||+-.||+..+.++
T Consensus 300 ede~keEceKyg~V~~viifeip~----~p~de------------avRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPS----QPEDE------------AVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCC----Cccch------------hheeeeeeccHHHHHHHHHhcCCceecce
Confidence 457888899999999998865311 12221 12389999999999999999999775553
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.89 E-value=0.12 Score=55.41 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=54.8
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
..|-|.||...+|.+.++.||.-.|+|..++|. |..-...+|.. .-.|||-|.+...+.-|-- |.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~-------------sRtcyVkf~d~~sv~vaQh-Lt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVI-------------SRTCYVKFLDSQSVTVAQH-LT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcce-------------eeeEEEeccCCcceeHHhh-hc
Confidence 478899999999999999999999999999984 43323333332 2359999999888876655 55
Q ss_pred CCCCCCCceEE
Q 009228 369 DEGNWRSGLRV 379 (539)
Q Consensus 369 ~~~~~~~glrV 379 (539)
+..+.+.-|-|
T Consensus 73 ntvfvdraliv 83 (479)
T KOG4676|consen 73 NTVFVDRALIV 83 (479)
T ss_pred cceeeeeeEEE
Confidence 55544444433
No 152
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.57 E-value=0.072 Score=61.48 Aligned_cols=72 Identities=25% Similarity=0.203 Sum_probs=58.8
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCC
Q 009228 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~ 370 (539)
.++.|..-..+-..|-.+|+.||+|++++++++ -.+|.|+|.+.|.|..|++.|.+.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----------------------~N~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----------------------LNMALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----------------------ccchhhhhHHHHHHHHhhhhhcCC
Confidence 345666667778889999999999999999765 235999999999999999999998
Q ss_pred CCCCCceEEEEeeec
Q 009228 371 GNWRSGLRVRLMLRR 385 (539)
Q Consensus 371 ~~~~~glrV~l~~~~ 385 (539)
+....|+-+++...+
T Consensus 358 evs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 358 EVSVTGAPSRVSFAK 372 (1007)
T ss_pred cccccCCceeEEecc
Confidence 877777766666543
No 153
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.56 E-value=0.059 Score=56.54 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=55.3
Q ss_pred ccceeEEEecCCCCCCHHH-H--HHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQN-L--MKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~-L--~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
++..-|||-+|+.+.-.++ | .++|.+||.|..|.+..+.. .....+ +--.+||+|+..|+|..
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S----------~~s~~~----~~~s~yITy~~~eda~r 140 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS----------SSSSSG----GTCSVYITYEEEEDADR 140 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc----------cccCCC----CCCcccccccchHhhhh
Confidence 4556788999987765544 3 36899999999999965421 011111 13359999999999999
Q ss_pred HHHHHcCCCCCCCceE
Q 009228 363 AIAELNDEGNWRSGLR 378 (539)
Q Consensus 363 Av~~LN~~~~~~~glr 378 (539)
||...++..+.++-++
T Consensus 141 ci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 141 CIDDVDGFVDDGRALK 156 (327)
T ss_pred HHHHhhhHHhhhhhhH
Confidence 9998887765555433
No 154
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.48 E-value=0.45 Score=40.94 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=46.0
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
-||--.||.+....||.++|+.||.|.--.| . ...|||.....|.|..|+..++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-~------------------------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-N------------------------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-C------------------------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-c------------------------CCcEEEEeecHHHHHHHHHHhcc
Confidence 3444449999999999999999999865555 2 23699999999999999998864
Q ss_pred CCCCCCceEEEEee
Q 009228 370 EGNWRSGLRVRLML 383 (539)
Q Consensus 370 ~~~~~~glrV~l~~ 383 (539)
....+|....
T Consensus 65 ----~~~y~i~tY~ 74 (87)
T PF08675_consen 65 ----NSSYRIQTYA 74 (87)
T ss_dssp -----SSSEEEEHH
T ss_pred ----CCceEEEEHH
Confidence 3456666543
No 155
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.45 E-value=0.034 Score=64.42 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=63.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...+|||++||+.++++.+|+..|..+|.|..|.|-.+.. +. .--|+||.|.+.+.+-+|..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------~~------esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------KT------ESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------Cc------ccchhhhhhhccccCcccch
Confidence 4578999999999999999999999999999999955421 11 13379999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
++.+..+...++++.+-
T Consensus 432 e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 432 EESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhcCCccccCccccccc
Confidence 99887665555555444
No 156
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.44 E-value=0.012 Score=67.64 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=53.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+..++||+||+..+++++|...|+.+|.|..|+|..-.. . ..| +|.|||+|...++|.+||.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n--------------~-~~~--rG~~Y~~F~~~~~~~aaV~ 727 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN--------------E-KRF--RGKAYVEFLKPEHAGAAVA 727 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh--------------c-ccc--ccceeeEeecCCchhhhhh
Confidence 3457899999999999999999999999999998852110 1 122 7899999999999999999
Q ss_pred HHc
Q 009228 366 ELN 368 (539)
Q Consensus 366 ~LN 368 (539)
...
T Consensus 728 f~d 730 (881)
T KOG0128|consen 728 FRD 730 (881)
T ss_pred hhh
Confidence 443
No 157
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.30 E-value=0.25 Score=50.29 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=52.5
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
..|||.||..-++.|.|+.-|+.||.|...-++.|. +. + ..+-.+|+|...-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----------r~-k-------~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----------RG-K-------PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc----------cc-c-------ccccchhhhhcchhHHHHHHHhc
Confidence 589999999999999999999999999887776542 11 1 12346899999999999999886
Q ss_pred CCC
Q 009228 369 DEG 371 (539)
Q Consensus 369 ~~~ 371 (539)
...
T Consensus 94 ~~g 96 (275)
T KOG0115|consen 94 EGG 96 (275)
T ss_pred cCc
Confidence 543
No 158
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.10 E-value=0.79 Score=52.89 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=7.6
Q ss_pred CCChHHHHHHHhhhh
Q 009228 192 GLNDESIQKVLNQVE 206 (539)
Q Consensus 192 ~~s~e~~~kI~kQvE 206 (539)
.+.+.+-++|++++.
T Consensus 388 vf~~~~De~Il~~lD 402 (830)
T KOG1923|consen 388 VFHELNDEKILEALD 402 (830)
T ss_pred hhhhhhHHHHHHhhh
Confidence 334444556666544
No 159
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.24 E-value=0.44 Score=46.07 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=44.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhh-cCCe---eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSV---KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~-fG~V---~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
....|+|++||.++|++++.+.++. ++.. ..+.-.++... .+.. .-.-|||.|.+.+++..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~----------~~~~-----~~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKS----------FKPP-----TYSRAYINFKNPEDLLE 70 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SS----------STTS-------EEEEEEESSCHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCcc----------CCCC-----cceEEEEEeCCHHHHHH
Confidence 4458999999999999999987776 6655 44443233211 1100 02349999999999999
Q ss_pred HHHHHcCCC
Q 009228 363 AIAELNDEG 371 (539)
Q Consensus 363 Av~~LN~~~ 371 (539)
.++.+++..
T Consensus 71 F~~~~~g~~ 79 (176)
T PF03467_consen 71 FRDRFDGHV 79 (176)
T ss_dssp HHHHCTTEE
T ss_pred HHHhcCCcE
Confidence 999888743
No 160
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.18 E-value=2.8 Score=37.68 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=47.2
Q ss_pred eEEEecCCCCCCHHHHHHHhhhc-CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~f-G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
.+.+-..+.-++.++|..+.+.+ ..|..+||+++... ++-.+++.|.+.++|....+.+|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHhC
Confidence 44444555666677887666665 46788999876431 24569999999999999999999
Q ss_pred CCCC
Q 009228 369 DEGN 372 (539)
Q Consensus 369 ~~~~ 372 (539)
|..+
T Consensus 76 Gk~F 79 (110)
T PF07576_consen 76 GKPF 79 (110)
T ss_pred CCcc
Confidence 9764
No 161
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.00 E-value=1.7 Score=50.32 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.5
Q ss_pred EEecCCCC
Q 009228 292 VAENLPED 299 (539)
Q Consensus 292 yV~nLP~d 299 (539)
|+.||++.
T Consensus 532 ~m~nF~ds 539 (830)
T KOG1923|consen 532 FMGNFPDS 539 (830)
T ss_pred HHHhchhh
Confidence 45566654
No 162
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.92 E-value=0.48 Score=55.36 Aligned_cols=76 Identities=20% Similarity=0.174 Sum_probs=62.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...+-++|++|...+....|...|..||.|..|.+.+- --||||.|++...|+.|+.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----------------------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----------------------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----------------------CcceeeecccCccchhhHH
Confidence 34567899999999999999999999999999888431 3489999999999999999
Q ss_pred HHcCCCCCCC--ceEEEEeee
Q 009228 366 ELNDEGNWRS--GLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~--glrV~l~~~ 384 (539)
.|.+..+.+- -++|.++..
T Consensus 510 ~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred HHhcCcCCCCCcccccccccC
Confidence 9998876653 366666543
No 163
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.22 E-value=0.44 Score=52.20 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=56.0
Q ss_pred ccceeEEEecCCCCC-CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~-t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
.+.+++-++-.+... +.++|...|.+||+|.+|.|.+. -..|.|+|.+.-+|-+|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 355666666666654 67899999999999999999543 125999999999997777
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
. ..+..+..+-++|.+...
T Consensus 427 ~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 427 A-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred c-cccceecCceeEEEEecC
Confidence 6 444455556688888765
No 164
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=84.87 E-value=2.5 Score=50.01 Aligned_cols=8 Identities=13% Similarity=0.468 Sum_probs=3.3
Q ss_pred eeEEEecC
Q 009228 289 RIVVAENL 296 (539)
Q Consensus 289 rTVyV~nL 296 (539)
|.|-++++
T Consensus 1049 RAIS~K~M 1056 (1282)
T KOG0921|consen 1049 RAISCKQM 1056 (1282)
T ss_pred heecccCc
Confidence 34444443
No 165
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=84.43 E-value=0.51 Score=51.93 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=6.4
Q ss_pred HHHHHhhhcC
Q 009228 304 NLMKIFSAVG 313 (539)
Q Consensus 304 ~L~e~Fs~fG 313 (539)
+|..+|+.-|
T Consensus 741 eldnvfsagg 750 (990)
T KOG1819|consen 741 ELDNVFSAGG 750 (990)
T ss_pred chhhhhccCC
Confidence 5677777543
No 166
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.80 E-value=4.4 Score=45.68 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=62.4
Q ss_pred cceeEEEecCCCC-CCHHHHHHHhhhc----CCeeEEEEeCCCCCCCC--------CC-C--------------CCc---
Q 009228 287 QSRIVVAENLPED-HCHQNLMKIFSAV----GSVKTIRTCLPQTSGGG--------AS-S--------------GSR--- 335 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~f----G~V~~VrI~~p~~~~~~--------~P-~--------------~~R--- 335 (539)
..+.|-|-|+.++ +..++|.-+|+.| |.|.+|.|+ +..-++. .| . |.-
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IY-pSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIY-PSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEec-hhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4578999999987 4678999999987 699999996 3222211 11 0 000
Q ss_pred ---cccccCcccC--ccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009228 336 ---SAKSEGMLFS--NKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 336 ---~~K~~g~~~~--~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l 381 (539)
+.|.+.-.+. ---||.|+|++.+.|.+..+.++|.++...++.+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0000000000 013799999999999999999999998888877665
No 167
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=79.70 E-value=2.7 Score=41.06 Aligned_cols=59 Identities=22% Similarity=0.111 Sum_probs=40.3
Q ss_pred CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc--CCCCCCCceE
Q 009228 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN--DEGNWRSGLR 378 (539)
Q Consensus 301 t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN--~~~~~~~glr 378 (539)
..+.|+++|..|+.+..+..+.- -+-..|.|.+.++|.+|...|. +..+.+..++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----------------------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----------------------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----------------------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----------------------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 45789999999999888877521 1137899999999999999988 5555555566
Q ss_pred EEEe
Q 009228 379 VRLM 382 (539)
Q Consensus 379 V~l~ 382 (539)
|.+.
T Consensus 65 ~yf~ 68 (184)
T PF04847_consen 65 VYFG 68 (184)
T ss_dssp EE--
T ss_pred EEEc
Confidence 6655
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.43 E-value=4.8 Score=44.23 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=56.6
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhc-CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~f-G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
+.+|.|-.+|.-+|.-||..|...| -.|..|+|+++..+ ++-.++|.|.+.++|....++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 6789999999999999999888765 46899999986432 244699999999999999999
Q ss_pred HcCCCCCC
Q 009228 367 LNDEGNWR 374 (539)
Q Consensus 367 LN~~~~~~ 374 (539)
+||..+..
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99987543
No 169
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.76 E-value=1.6 Score=52.43 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.8
Q ss_pred CHHHHHHhhhcCCce
Q 009228 249 SHSHLASVLRKSSKL 263 (539)
Q Consensus 249 d~~~V~~ALr~S~~L 263 (539)
|.+-|.+.+.+|.-|
T Consensus 222 dde~v~dw~y~sr~l 236 (2365)
T COG5178 222 DDEHVRDWVYTSRDL 236 (2365)
T ss_pred CcHHHHHHHhhcccc
Confidence 344555555555544
No 170
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=77.37 E-value=2.1 Score=46.51 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=45.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
.+|+.||.+..+..+|+.+|... .+ +. .|..+--.|||||++.+..-|.+|++.|++
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~--~~---------------~g~fl~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KI--PG---------------SGQFLVKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cC--CC---------------CcceeeecceeeccCCchhhhhhhHHhhch
Confidence 57999999999999999999764 11 10 001111268999999999999999999987
Q ss_pred CC
Q 009228 370 EG 371 (539)
Q Consensus 370 ~~ 371 (539)
+.
T Consensus 60 k~ 61 (584)
T KOG2193|consen 60 KV 61 (584)
T ss_pred hh
Confidence 53
No 171
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=76.97 E-value=1.7 Score=42.42 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=33.0
Q ss_pred ccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCc--eEEe---ecccccccCC
Q 009228 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDGKKIKRQN 276 (539)
Q Consensus 225 ~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~--LeVs---edg~kVRR~~ 276 (539)
.+++||||+|+-|+...+++.+.-+.+.|.++++++.+ .++. .++.+||-.+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 47889999999999999988776678888888887664 6666 5567787653
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=76.95 E-value=6.9 Score=46.60 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=3.9
Q ss_pred hHHHHHHHhhh
Q 009228 195 DESIQKVLNQV 205 (539)
Q Consensus 195 ~e~~~kI~kQv 205 (539)
+..+..++.||
T Consensus 951 ~~a~~ql~d~L 961 (1282)
T KOG0921|consen 951 DGARRQLIDVL 961 (1282)
T ss_pred hhhHHHHHHHH
Confidence 33333333333
No 173
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=76.33 E-value=0.6 Score=50.15 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=50.5
Q ss_pred hhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
++++. |||+|.+|..++...++.++|..+|+|...++.- + ..+.+|-|+|........
T Consensus 147 leeir-Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---------------k------~~s~~c~~sf~~qts~~h 204 (479)
T KOG4676|consen 147 LEEIR-RTREVQSLISAAILPESGESFERKGEVSYAHTAS---------------K------SRSSSCSHSFRKQTSSKH 204 (479)
T ss_pred hHHHH-hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---------------c------CCCcchhhhHhhhhhHHH
Confidence 34554 8999999999999999999999999999888731 1 124567799998888888
Q ss_pred HHHHHc
Q 009228 363 AIAELN 368 (539)
Q Consensus 363 Av~~LN 368 (539)
|+...+
T Consensus 205 alr~~g 210 (479)
T KOG4676|consen 205 ALRSHG 210 (479)
T ss_pred HHHhcc
Confidence 887443
No 174
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=75.72 E-value=1.6 Score=45.39 Aligned_cols=80 Identities=15% Similarity=-0.039 Sum_probs=59.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..+++|++++.+.+.+.++..+|.++|.+...++.... ..+..|++++|.|+..+.+..|++.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~-----------------~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE-----------------DSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhc-----------------cccccccceeeccccHHHHHHHHHh
Confidence 36789999999999999999999999987666664322 1234589999999999999999996
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
.....+..+.+...+..
T Consensus 150 s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNT 166 (285)
T ss_pred hhccccccccccCcccc
Confidence 55445445444444433
No 175
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.79 E-value=14 Score=38.79 Aligned_cols=74 Identities=20% Similarity=0.151 Sum_probs=50.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
+.-|-|-+|+... ..-|..+|++||+|.....- + +-.+-+|.|.+.-+|.|||. .
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~---------------------ngNwMhirYssr~~A~KALs-k 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--S---------------------NGNWMHIRYSSRTHAQKALS-K 251 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--C---------------------CCceEEEEecchhHHHHhhh-h
Confidence 4567777887653 34577889999999887651 1 13368999999999999998 5
Q ss_pred cCCCCCCCceEEEEeeecCCC
Q 009228 368 NDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~~~~k 388 (539)
|+..+.+. +-| -...|..|
T Consensus 252 ng~ii~g~-vmi-GVkpCtDk 270 (350)
T KOG4285|consen 252 NGTIIDGD-VMI-GVKPCTDK 270 (350)
T ss_pred cCeeeccc-eEE-eeeecCCH
Confidence 66554433 222 23456665
No 176
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=72.41 E-value=2.8 Score=40.86 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=49.7
Q ss_pred hccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCc--eEEeecccccccCCC--Cc-chhhh-hccceeEEEecCC
Q 009228 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVSEDGKKIKRQNP--LT-ESDLE-ELQSRIVVAENLP 297 (539)
Q Consensus 224 i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~--LeVsedg~kVRR~~P--l~-e~~~~-~~~~rTVyV~nLP 297 (539)
+.+|++|||+|+.|+...+.+....+.+.|.+++.++.+ .+++ +.+||-.+- +. +.+.+ .....+||
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~qGHSi~v~~~~~~~~~P~~ly----- 98 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQGHSVDVDLDLEEDTPPAVLY----- 98 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEeccCcCCccccCCccCCCCceeE-----
Confidence 457899999999999876644333467888888887765 5554 567776531 21 10011 11112222
Q ss_pred CCCCHHHHHHHhhhcC
Q 009228 298 EDHCHQNLMKIFSAVG 313 (539)
Q Consensus 298 ~d~t~e~L~e~Fs~fG 313 (539)
..+..+.+..|++. |
T Consensus 99 HGT~~~~~~~I~~~-G 113 (179)
T PRK00819 99 HGTSSEELDSILEE-G 113 (179)
T ss_pred eCCCHHHHHHHHHh-C
Confidence 23667888888865 5
No 177
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=70.74 E-value=60 Score=35.82 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=8.8
Q ss_pred CCCCCChHHHHHHHhhhh
Q 009228 189 QHGGLNDESIQKVLNQVE 206 (539)
Q Consensus 189 s~~~~s~e~~~kI~kQvE 206 (539)
+....-.|.+..|+++|.
T Consensus 447 ~~lP~~sDaRsdLL~aIr 464 (518)
T KOG1830|consen 447 PVLPPISDARSDLLAAIR 464 (518)
T ss_pred CCCCCCCchHHHHHHHHH
Confidence 444444455555555543
No 178
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=70.65 E-value=12 Score=35.50 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=32.1
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEe
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~ 321 (539)
.....++++.+++..++.+++..+|..+|.|..+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 3456789999999999999999999999999777764
No 179
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=69.95 E-value=8.1 Score=49.07 Aligned_cols=8 Identities=25% Similarity=0.530 Sum_probs=3.1
Q ss_pred cccccchh
Q 009228 234 ISTVASFK 241 (539)
Q Consensus 234 I~~IasFk 241 (539)
+-+++.|-
T Consensus 1809 ~GVmaGYg 1816 (2039)
T PRK15319 1809 VGVMASYI 1816 (2039)
T ss_pred EEEEEEec
Confidence 33344443
No 180
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=68.99 E-value=3.3 Score=40.26 Aligned_cols=39 Identities=10% Similarity=0.416 Sum_probs=34.2
Q ss_pred hccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCc
Q 009228 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK 262 (539)
Q Consensus 224 i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~ 262 (539)
+.++.||||+++.|++.++.+.+....+.|..+++...+
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 457899999999999999999998889999999887654
No 181
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=68.18 E-value=22 Score=40.10 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=6.4
Q ss_pred CCCcccccccc
Q 009228 107 TGAFHVIPVHH 117 (539)
Q Consensus 107 ~~~~~~~~~~~ 117 (539)
+++..|+|++|
T Consensus 258 p~~~~ViPI~h 268 (582)
T PF03276_consen 258 PPPQPVIPIQH 268 (582)
T ss_pred CCccccccHHH
Confidence 44556777733
No 182
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=67.78 E-value=13 Score=30.62 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=36.0
Q ss_pred CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCC
Q 009228 299 DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEG 371 (539)
Q Consensus 299 d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~ 371 (539)
.++.++|+..+..|+- ..|+. ++ .| -||.|.+.++|+++....++..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~ 57 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTL 57 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCE
Confidence 4678999999999964 34443 21 22 6899999999999999877654
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=66.15 E-value=1e+02 Score=33.36 Aligned_cols=11 Identities=36% Similarity=0.244 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q 009228 144 HNHHHHRHQNH 154 (539)
Q Consensus 144 ~~~~~~~h~~~ 154 (539)
++++-.+|-+.
T Consensus 342 yn~~~~r~~~p 352 (498)
T KOG4849|consen 342 YNGLPPRHVNP 352 (498)
T ss_pred CCCCCcccCCC
Confidence 55555555433
No 184
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=64.46 E-value=4.4 Score=46.31 Aligned_cols=68 Identities=16% Similarity=0.056 Sum_probs=56.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.-||||+|+-+.+..+=++.+..+||-|.+...+ + |+|.+|...+.+..|+..|
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------------------------~-fgf~~f~~~~~~~ra~r~~ 93 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------------------------K-FGFCEFLKHIGDLRASRLL 93 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------------------------h-hcccchhhHHHHHHHHHHh
Confidence 4599999999999999999999999998776441 2 7999999999999999988
Q ss_pred cCCCCCCCceEEEE
Q 009228 368 NDEGNWRSGLRVRL 381 (539)
Q Consensus 368 N~~~~~~~glrV~l 381 (539)
+.-.+.+.++-+.+
T Consensus 94 t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 94 TELNIDDQKLIENV 107 (668)
T ss_pred cccCCCcchhhccc
Confidence 77666666665554
No 185
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=63.65 E-value=29 Score=28.52 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=33.6
Q ss_pred CCCHHHHHHHhhhcC-----CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCC
Q 009228 299 DHCHQNLMKIFSAVG-----SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373 (539)
Q Consensus 299 d~t~e~L~e~Fs~fG-----~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~ 373 (539)
.++..+|..++...+ .|-.|+|. ..|+|||-... .|+++++.|++..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-------------------------~~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-------------------------DNFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-------------------------eeEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 456667777776654 35677773 33799998765 788999999998888
Q ss_pred CCceEEEEe
Q 009228 374 RSGLRVRLM 382 (539)
Q Consensus 374 ~~glrV~l~ 382 (539)
++.++|+++
T Consensus 66 gk~v~ve~A 74 (74)
T PF03880_consen 66 GKKVRVERA 74 (74)
T ss_dssp S----EEE-
T ss_pred CeeEEEEEC
Confidence 877777653
No 186
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=60.72 E-value=13 Score=41.95 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=47.9
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCC-----eeEEEEe------CCCC-CCCC------CCCCCccccccCcccCccceE
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGS-----VKTIRTC------LPQT-SGGG------ASSGSRSAKSEGMLFSNKLHA 350 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~-----V~~VrI~------~p~~-~~~~------~P~~~R~~K~~g~~~~~KG~A 350 (539)
.|+-|+|++...+..+|.+|.+..-. |++|.-. ...+ +.++ .|.|.+. ..|.|||
T Consensus 362 tt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~n-------kcNvGYA 434 (549)
T KOG4660|consen 362 TTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKN-------KCNVGYA 434 (549)
T ss_pred hhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEecccccc-------cccccee
Confidence 46778888888888888877764321 2222100 0000 0000 1222221 2357999
Q ss_pred EEEeCCHHHHHHHHHHHcCCCCCCC
Q 009228 351 FVEYESVELAEKAIAELNDEGNWRS 375 (539)
Q Consensus 351 FVEFet~E~AekAv~~LN~~~~~~~ 375 (539)
||-|.+.+++.++.+++|+.. |.+
T Consensus 435 FINm~sp~ai~~F~kAFnGk~-W~~ 458 (549)
T KOG4660|consen 435 FINMTSPEAIIRFYKAFNGKK-WEK 458 (549)
T ss_pred EEeecCHHHHHHHHHHHcCCc-hhh
Confidence 999999999999999999854 654
No 187
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=60.66 E-value=3.3 Score=42.95 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=25.5
Q ss_pred eeEEEecCCC-----------C-CCHHHHHHHhhhcCCeeEEEE
Q 009228 289 RIVVAENLPE-----------D-HCHQNLMKIFSAVGSVKTIRT 320 (539)
Q Consensus 289 rTVyV~nLP~-----------d-~t~e~L~e~Fs~fG~V~~VrI 320 (539)
-|||+.+||- + .+++-|+..|+.||+|.+|.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 4888888873 1 356789999999999988865
No 188
>PTZ00315 2'-phosphotransferase; Provisional
Probab=60.26 E-value=9.6 Score=43.50 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=39.6
Q ss_pred hccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCc--eEEe---ecc-cccccCC
Q 009228 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDG-KKIKRQN 276 (539)
Q Consensus 224 i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~--LeVs---edg-~kVRR~~ 276 (539)
+..|.+|||.|+.|+.-.+++....+.+.|.++++++.+ .+++ +++ .+||-.+
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 457889999999999887776555578899999888764 7776 345 3576543
No 189
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=57.25 E-value=5.2 Score=44.43 Aligned_cols=11 Identities=64% Similarity=1.325 Sum_probs=4.8
Q ss_pred CccCccccccc
Q 009228 131 HHQQHQQHQHH 141 (539)
Q Consensus 131 h~~~h~~~~~~ 141 (539)
|||.||||+||
T Consensus 572 hhqrhhhhhhh 582 (990)
T KOG1819|consen 572 HHQRHHHHHHH 582 (990)
T ss_pred hhhhccccccc
Confidence 44444444444
No 190
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=56.18 E-value=47 Score=37.62 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=6.8
Q ss_pred ChHHHHHHHhhh
Q 009228 194 NDESIQKVLNQV 205 (539)
Q Consensus 194 s~e~~~kI~kQv 205 (539)
|.|++-+|+..|
T Consensus 302 tpd~RcRvvNAL 313 (582)
T PF03276_consen 302 TPDLRCRVVNAL 313 (582)
T ss_pred CccHHHHHHHHH
Confidence 556666666443
No 191
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=53.21 E-value=29 Score=38.09 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=12.3
Q ss_pred ChHHHHHHHhhhhhhccCCC
Q 009228 194 NDESIQKVLNQVEYYFSDLN 213 (539)
Q Consensus 194 s~e~~~kI~kQvEyYFSD~N 213 (539)
+-|+...|.++++-|+...+
T Consensus 84 treLa~Qi~~~~~~~~~~~~ 103 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLN 103 (456)
T ss_pred cHHHHHHHHHHHHHHhccCC
Confidence 56666667777766654443
No 192
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=48.43 E-value=14 Score=38.03 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.6
Q ss_pred CCCcccccc
Q 009228 521 DGTRGFAMG 529 (539)
Q Consensus 521 dgtrgf~~g 529 (539)
||--||.+|
T Consensus 112 nG~VGlG~g 120 (257)
T PTZ00070 112 NGHIGLGAK 120 (257)
T ss_pred CCcEeccee
Confidence 333444433
No 193
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=47.97 E-value=27 Score=39.25 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=8.4
Q ss_pred eeEEEecCCCCC
Q 009228 289 RIVVAENLPEDH 300 (539)
Q Consensus 289 rTVyV~nLP~d~ 300 (539)
|+++|++||+..
T Consensus 520 c~~vVE~Fpess 531 (817)
T KOG1925|consen 520 CSLVVETFPESS 531 (817)
T ss_pred HHHHHHhCCcch
Confidence 566788887653
No 194
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.78 E-value=55 Score=28.18 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=37.2
Q ss_pred EEEecCCCCCCHHHHHHHhhh-cC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 291 VVAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~-fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
.|+=-.+.+++..+|++.+++ || +|..|+++.-.. + .-=|||.+..-++|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-------~-------------~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-------G-------------EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-------C-------------cEEEEEEeCCCCcHHHHHHhh
Confidence 344445667888888887776 55 677777654210 0 112999999988888775543
No 195
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=44.63 E-value=17 Score=32.53 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=3.6
Q ss_pred CCeeEEEE
Q 009228 313 GSVKTIRT 320 (539)
Q Consensus 313 G~V~~VrI 320 (539)
|.|..+.+
T Consensus 15 GhIVt~Et 22 (119)
T KOG3172|consen 15 GHIVTVET 22 (119)
T ss_pred CcEEEEEe
Confidence 44444444
No 196
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.62 E-value=47 Score=32.22 Aligned_cols=93 Identities=15% Similarity=0.244 Sum_probs=47.7
Q ss_pred CChHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcC---HHHHHHhhhcCCceE---Ee
Q 009228 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS---HSHLASVLRKSSKLV---VS 266 (539)
Q Consensus 193 ~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d---~~~V~~ALr~S~~Le---Vs 266 (539)
..+..+..++.||+-|- -++-|....-.+++ -||...+. ..+||..|... .+.+.+||.-+..-. +.
T Consensus 68 ~~d~~l~efl~qLddYt---P~IPDavt~~yL~~--aGf~~~D~--rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~ 140 (176)
T KOG3423|consen 68 TKDTHLEEFLAQLDDYT---PTIPDAVTDHYLKK--AGFQTSDP--RVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIG 140 (176)
T ss_pred CcchHHHHHHHHHhcCC---CCCcHHHHHHHHHh--cCCCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 45666788999999772 23333322222212 47754333 22344444322 145566766553211 22
Q ss_pred ecccccccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhhhcC
Q 009228 267 EDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVG 313 (539)
Q Consensus 267 edg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG 313 (539)
.++++-+.+ -+..|.++|.....+||
T Consensus 141 ~~k~~~kdk---------------------K~tLtmeDL~~AL~EyG 166 (176)
T KOG3423|consen 141 KDKKQAKDK---------------------KYTLTMEDLSPALAEYG 166 (176)
T ss_pred ccccccccc---------------------ceeeeHHHHHHHHHHhC
Confidence 222222111 12358899999999999
No 197
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=44.27 E-value=84 Score=34.16 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=19.1
Q ss_pred CChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecc
Q 009228 216 TTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDG 269 (539)
Q Consensus 216 ~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg 269 (539)
+|.||.+. | |.|-.+.-|-| ..+.||+....+.-.-||
T Consensus 273 kdaf~kKh------G-vKlGfMs~F~K---------A~~~Alq~qPvVNavIdg 310 (457)
T KOG0559|consen 273 KDAFLKKH------G-VKLGFMSGFSK---------AAAYALQDQPVVNAVIDG 310 (457)
T ss_pred HHHHHHHh------C-ceeeehhHHHH---------HHHHHhhhCcceeeeecC
Confidence 46776664 1 33444444544 334566666655433344
No 198
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=42.52 E-value=19 Score=36.07 Aligned_cols=6 Identities=67% Similarity=1.265 Sum_probs=2.4
Q ss_pred CCCCCC
Q 009228 147 HHHRHQ 152 (539)
Q Consensus 147 ~~~~h~ 152 (539)
|+|+||
T Consensus 216 h~HrHh 221 (311)
T PF12782_consen 216 HPHRHH 221 (311)
T ss_pred cccccc
Confidence 334443
No 199
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.46 E-value=77 Score=26.82 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=37.7
Q ss_pred EEEecCCCCCCHHHHHHHhhh-cC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 291 VVAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~-fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
-|+=..+.+++..+|++.++. || +|..|+.+.-. .+ .| =|||.+..-++|......|
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-------~~------------~K-KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-------RG------------EK-KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-------CC------------ce-EEEEEECCCCcHHHHHHhh
Confidence 355556778898888888877 55 57777665321 00 01 2999999888887765543
No 200
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=42.21 E-value=1.9e+02 Score=23.53 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=32.1
Q ss_pred CHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC-CHHHHHHHHHHHcCC
Q 009228 301 CHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE-SVELAEKAIAELNDE 370 (539)
Q Consensus 301 t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe-t~E~AekAv~~LN~~ 370 (539)
+.-++.+.|+.+| .+..|.-+ | ...+ .+.-.-||+|+ +.+..++|++.|...
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSR-P--------~~~~---------~~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESR-P--------SRRN---------GSEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECC-C--------CCCC---------CceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 4567888898887 45555432 1 1111 11336789988 566778888888653
No 201
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=41.05 E-value=7.4e+02 Score=30.43 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=10.1
Q ss_pred eEEEEeCCHHHHHHHHH
Q 009228 349 HAFVEYESVELAEKAIA 365 (539)
Q Consensus 349 ~AFVEFet~E~AekAv~ 365 (539)
+-||=.++..-|+|--+
T Consensus 570 L~F~Pl~gSKLAkKRee 586 (982)
T PF03154_consen 570 LYFVPLPGSKLAKKREE 586 (982)
T ss_pred eeeeecCccHHhhhhHH
Confidence 35666666666655544
No 202
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=40.36 E-value=55 Score=29.67 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=28.8
Q ss_pred eeEEEecCCCC---------CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC-HH
Q 009228 289 RIVVAENLPED---------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VE 358 (539)
Q Consensus 289 rTVyV~nLP~d---------~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet-~E 358 (539)
-+++|-|++.+ .+.+.|++.|+.|..++ |+.++.. ..+.|++.|+|.. ..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKDWS 68 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SSHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCChH
Confidence 36777777643 34578999999998876 5554431 1247899999996 33
Q ss_pred HHHHHHH
Q 009228 359 LAEKAIA 365 (539)
Q Consensus 359 ~AekAv~ 365 (539)
--..|++
T Consensus 69 Gf~~A~~ 75 (116)
T PF03468_consen 69 GFKNAMR 75 (116)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333433
No 203
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=39.68 E-value=27 Score=38.56 Aligned_cols=13 Identities=31% Similarity=0.215 Sum_probs=7.6
Q ss_pred hhhhccCCCcCCC
Q 009228 205 VEYYFSDLNLATT 217 (539)
Q Consensus 205 vEyYFSD~NL~~D 217 (539)
||||-.+.||.-|
T Consensus 336 VEnq~~~~~~Vi~ 348 (480)
T KOG2675|consen 336 VENQENNKNLVID 348 (480)
T ss_pred EeeecCCcceeee
Confidence 5666666666543
No 204
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=38.36 E-value=69 Score=33.77 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=51.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
-..|.|..+|+..+++.-++..-|-+||.|++|-++...+... +... .-+.+.+..+-|-+.+.+-...
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~----d~~~------~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPS----DDYN------DDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCccc----cccc------ccccceEEEEeeechHHHHHHH
Confidence 4568999999999999999999999999999999987653211 1111 1123567899999988775544
No 205
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=38.22 E-value=1.4e+02 Score=22.93 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=40.4
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCH----HHHHHHHH
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV----ELAEKAIA 365 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~----E~AekAv~ 365 (539)
|+.|.|+.=..+...|++.+...--|.++.+-.. ++.+-|+|+.. ++..++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----------------------~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----------------------TKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----------------------TTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----------------------CCEEEEEEecCCCCHHHHHHHHH
Confidence 6788888777788899999999988999998432 33578899854 55555555
Q ss_pred H
Q 009228 366 E 366 (539)
Q Consensus 366 ~ 366 (539)
.
T Consensus 58 ~ 58 (62)
T PF00403_consen 58 K 58 (62)
T ss_dssp H
T ss_pred H
Confidence 4
No 206
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=36.41 E-value=85 Score=34.48 Aligned_cols=19 Identities=37% Similarity=0.258 Sum_probs=9.3
Q ss_pred CCCcCccCCCCCCCCCCCC
Q 009228 34 NSSFSRLNAKAPEFVPTRN 52 (539)
Q Consensus 34 ~~~~~~~~~~~p~~~p~~~ 52 (539)
..|++-.|..+++-|-+..
T Consensus 502 ~~s~~~~~~k~l~~v~~~g 520 (563)
T KOG1785|consen 502 QTSSSGVNIKELENVETSG 520 (563)
T ss_pred CCCCCCcchhhhhcccccC
Confidence 3444555555555554333
No 207
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=34.63 E-value=2.2e+02 Score=22.19 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=27.5
Q ss_pred CHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 301 CHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 301 t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...+|.++|.+.| .|.++-+.... .++..-|.+++.|.|.++++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~---------------------~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTS---------------------EFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecC---------------------CCCEEEEEECCHHHHHHHHH
Confidence 4578888998877 67777653211 13345556677666666665
No 208
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=34.46 E-value=23 Score=35.94 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=57.8
Q ss_pred CChHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhc-----CCceEEee
Q 009228 193 LNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-----SSKLVVSE 267 (539)
Q Consensus 193 ~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~-----S~~LeVse 267 (539)
++..+.++|++.++.- .+..+.+. --..|.+...++...+++..+..|.+. .+.|+. +..-.+..
T Consensus 14 ~~~~~~~~Iv~~~~~~-------~~~~VlEi--GpG~G~lT~~L~~~~~~v~~vE~d~~~-~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 14 VDPNIADKIVDALDLS-------EGDTVLEI--GPGPGALTRELLKRGKRVIAVEIDPDL-AKHLKERFASNPNVEVING 83 (262)
T ss_dssp EHHHHHHHHHHHHTCG-------TTSEEEEE--SSTTSCCHHHHHHHSSEEEEEESSHHH-HHHHHHHCTTCSSEEEEES
T ss_pred CCHHHHHHHHHhcCCC-------CCCEEEEe--CCCCccchhhHhcccCcceeecCcHhH-HHHHHHHhhhcccceeeec
Confidence 3566778888877643 12212221 223455555554444555555556543 333333 22333455
Q ss_pred cccccccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhh--hcCCeeEE
Q 009228 268 DGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFS--AVGSVKTI 318 (539)
Q Consensus 268 dg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs--~fG~V~~V 318 (539)
|..++.....+ .....++|.|||+..+..-|.+++. .||.+..+
T Consensus 84 D~l~~~~~~~~-------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 84 DFLKWDLYDLL-------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp -TTTSCGGGHC-------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred chhccccHHhh-------cCCceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 54333221111 2356789999999999988888886 34444333
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=33.39 E-value=30 Score=30.07 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.6
Q ss_pred hccceeEEEecCCCCCCHHHHHHHh
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIF 309 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~F 309 (539)
.+..|||.|.|||....+|+|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4668999999999999999998754
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=32.80 E-value=51 Score=36.79 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=38.0
Q ss_pred CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCC
Q 009228 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (539)
Q Consensus 300 ~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~ 375 (539)
...+.+.++|+++|-++...+|-- ..||..|.|+ +.|.+++.-++-..+|..
T Consensus 209 ~~s~~r~k~fee~g~~~r~el~p~----------------------~hg~~~vv~~--enan~~m~s~da~ei~~~ 260 (526)
T KOG2135|consen 209 RNSENRRKFFEEFGVLERGELCPT----------------------HHGCVPVVSK--ENANKTMKSEDAAEIMKT 260 (526)
T ss_pred cccHHhhhhhHhhceeeecccccc----------------------ccccceeEee--ccccccccCCcchhhhhc
Confidence 456789999999999988887621 1455666666 778888887766666665
No 211
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.22 E-value=1.1e+02 Score=33.77 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=40.9
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCe-eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V-~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
-.|-|.+||.....+||...|+.|+.- -.|.++. .-+||-.|++...|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------------------------dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------------------------DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEee------------------------cceeEEeecchHHHHHHhh
Confidence 356789999999999999999999752 2333321 2369999999999999887
No 212
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=31.86 E-value=72 Score=33.57 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=39.7
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCe-eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC-------HHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-------VELA 360 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V-~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet-------~E~A 360 (539)
.-||+.||+.|+...||+.-+.+-|.+ .+|.. -+..|-||..|-+ .+++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-----------------------kg~~~k~flh~~~~~~~~~~~~~~ 387 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-----------------------KGHFGKCFLHFGNRKGVPSTQDDM 387 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee-----------------------ecCCcceeEecCCccCCCCCchHH
Confidence 459999999999999999988876643 23332 1125569999976 4556
Q ss_pred HHHHHHHc
Q 009228 361 EKAIAELN 368 (539)
Q Consensus 361 ekAv~~LN 368 (539)
.+++..+|
T Consensus 388 ~~~~~s~~ 395 (396)
T KOG4410|consen 388 DKVLKSLN 395 (396)
T ss_pred HHHhccCC
Confidence 66665554
No 213
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=31.45 E-value=1.7e+02 Score=23.52 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 302 ~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
.++|.+++.++| +....|.- . +.-+++|+-|++.+.++++++.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sG-----s----------------G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSG-----S----------------GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEET-----T----------------SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCC-----C----------------CCCCeEEEEECCHHHHHHHHHHHH
Confidence 457888889999 66666621 0 114578899999999999998875
No 214
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=30.84 E-value=2.8e+02 Score=22.14 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=33.3
Q ss_pred CHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC---HHHHHHHHHHHcCC
Q 009228 301 CHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES---VELAEKAIAELNDE 370 (539)
Q Consensus 301 t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet---~E~AekAv~~LN~~ 370 (539)
+..++-++|+.+| .|..|.-+ |. ..+ .+.-..||+++. .+..+++++.|...
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Sr-p~--------~~~---------~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESR-PS--------RKG---------LWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEee-ec--------CCC---------CceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 4578888999986 67777442 21 000 113468899984 66777888888653
No 215
>PRK06545 prephenate dehydrogenase; Validated
Probab=30.49 E-value=1.2e+02 Score=32.26 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=41.0
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
..|||-=-++-=....|..+....| +|++|+|.+.+.- ..|..-+.|.+.+++++|.+.|
T Consensus 291 ~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~-------------------~~g~~~~~~~~~~~~~~~~~~~ 351 (359)
T PRK06545 291 YDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARED-------------------IHGVLQISFKNEEDRERAKALL 351 (359)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCC-------------------cCceEEEEeCCHHHHHHHHHHH
Confidence 4555543233333456666666666 7999999653210 1567889999999999999977
Q ss_pred cC
Q 009228 368 ND 369 (539)
Q Consensus 368 N~ 369 (539)
..
T Consensus 352 ~~ 353 (359)
T PRK06545 352 EE 353 (359)
T ss_pred Hh
Confidence 53
No 216
>PF14893 PNMA: PNMA
Probab=29.51 E-value=40 Score=36.07 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhh
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSA 311 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~ 311 (539)
-|.|.|.|||+++++++|++.+..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 368999999999999998887654
No 217
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.48 E-value=63 Score=33.41 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=22.0
Q ss_pred EEEEeCCHHHHHHHHHHHcCCCCCCCceEEEE
Q 009228 350 AFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 350 AFVEFet~E~AekAv~~LN~~~~~~~glrV~l 381 (539)
|||+|++..+|..|++.+...+ ...+++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~ 30 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSP 30 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEee
Confidence 7999999999999999665543 33444443
No 218
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=27.39 E-value=1.2e+02 Score=33.67 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCcCccCCCCCCCCCC
Q 009228 23 PSSSSDPSLSRNSSFSRLNAKAPEFVPT 50 (539)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~p~~~p~ 50 (539)
......+++..+.+++++|++|||||+.
T Consensus 18 ~~~~~~~S~g~s~~~~k~~~q~~~fv~r 45 (484)
T KOG1855|consen 18 VDVGMGPSIGDSDPLSKENDQAPEFVQR 45 (484)
T ss_pred eeccCCCcccccccccccccccchhhhc
Confidence 4566778889999999999999999993
No 219
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=27.24 E-value=62 Score=35.74 Aligned_cols=11 Identities=9% Similarity=0.105 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 009228 357 VELAEKAIAEL 367 (539)
Q Consensus 357 ~E~AekAv~~L 367 (539)
.++.+.+.+.+
T Consensus 302 ~~~l~~~Fk~F 312 (419)
T KOG0116|consen 302 PAELEEVFKQF 312 (419)
T ss_pred HHHHHHHHhhc
Confidence 44555555543
No 220
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=27.19 E-value=2.8e+02 Score=22.47 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=36.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet 356 (539)
.++.|.++.=..+...+++..+...-|..|.+-.+ ++.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----------------------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----------------------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----------------------cCeEEEEEcC
Confidence 47788888777788899999999888999988432 4458999998
No 221
>COG4907 Predicted membrane protein [Function unknown]
Probab=25.24 E-value=57 Score=36.41 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=8.1
Q ss_pred cCCCCceecccccchhh
Q 009228 226 KDPEGYVPISTVASFKK 242 (539)
Q Consensus 226 kd~dGyVpI~~IasFkK 242 (539)
.+++||+.|--+..|+-
T Consensus 325 l~N~gyi~i~~~~~~~v 341 (595)
T COG4907 325 LNNEGYITIVDLIRKKV 341 (595)
T ss_pred ccccceeEEeecceeee
Confidence 34555555444444433
No 222
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=24.78 E-value=2.6e+02 Score=25.21 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 302 ~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..+|.++.+++| |.+.+|..+... +-.|+|+|+.|.+..-.+|.
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~-------------------n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEE-------------------NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCc-------------------ccEEEEEEEcChHHHHHHHh
Confidence 357888889987 677777655311 25689999997666655554
No 223
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.53 E-value=1.3e+02 Score=32.34 Aligned_cols=45 Identities=27% Similarity=0.444 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009228 53 PQSTQSKPQVQVQVQQPPQRVMMPPPPPPAAAMVHPHPPPPHPPS 97 (539)
Q Consensus 53 ~~~~~~~~~~~~~~~~~p~~~~~~ppppp~~~~~~~~~ppp~p~~ 97 (539)
.+|-.+++-+++++|-|+..+.++|++|.-...+.+.|+|||+.+
T Consensus 138 ~pP~ys~~~~~~p~p~p~~~~~~~p~~p~~~~~~~p~p~p~~~~g 182 (365)
T KOG2391|consen 138 DPPVYSRSLPSPPPPYPQTEYNTPPLKPKGSAYKPPLPPPPPPGG 182 (365)
T ss_pred CCccccCCCCCCCCCCCcccCCCCCCCCCCcCcCCCCCCCCCCCc
No 224
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.80 E-value=4.8e+02 Score=22.47 Aligned_cols=51 Identities=14% Similarity=0.371 Sum_probs=30.3
Q ss_pred CHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC--HHHHHHHHHHHcC
Q 009228 301 CHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES--VELAEKAIAELND 369 (539)
Q Consensus 301 t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet--~E~AekAv~~LN~ 369 (539)
+.-++.++|+.+| .+..|.-+ | + +.. .+.-.-||+|+- .+..++|++.|..
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSR-P--------~-----~~~----~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESR-P--------S-----RLN----KDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEec-c--------C-----CCC----CceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 4567888898887 45555442 1 1 111 013367899883 4566778887754
No 225
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=22.70 E-value=87 Score=35.60 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=53.6
Q ss_pred HHHHhhhhhhccCCCcCCChHHHHhh----------ccCCCCceeccc-ccchhhHHHhhcCHHHHH--HhhhcCCceEE
Q 009228 199 QKVLNQVEYYFSDLNLATTDHLIRFI----------LKDPEGYVPIST-VASFKKIKAIISSHSHLA--SVLRKSSKLVV 265 (539)
Q Consensus 199 ~kI~kQvEyYFSD~NL~~D~fL~~~i----------~kd~dGyVpI~~-IasFkKmK~Lt~d~~~V~--~ALr~S~~LeV 265 (539)
..|+++|.+-+.+-++..--|-.+.+ ..++.-|-.++. =.+|.||.++..+.+... .+|+.
T Consensus 329 keia~rI~~eLk~~sIpQaiFAervLcRSQGTLSDLLrnPKPW~klKsGRetFrRM~~WL~eP~~~r~m~~L~~------ 402 (558)
T KOG2252|consen 329 KEIAQRIKAELKRYSIPQAIFAERVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMANWLEEPEFQRLMSALRK------ 402 (558)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHhhcccchHHHHhhCCCchhhhccccHHHHHHHHHhcCHHHHHHHHHHHH------
Confidence 55666666666666666533332221 223444544433 456999999998765444 22322
Q ss_pred eecccccccCCC--CcchhhhhccceeEEEecCCCCCCHHHHHHHhhh
Q 009228 266 SEDGKKIKRQNP--LTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA 311 (539)
Q Consensus 266 sedg~kVRR~~P--l~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~ 311 (539)
+.++|+.- -.+......+.|.||. ++..+.|+.||..
T Consensus 403 ----~a~kRke~ep~~d~~~~~KKPRlVfT-----d~QkrTL~aiFke 441 (558)
T KOG2252|consen 403 ----KACKRKEQEPTDDKMLQTKKPRLVFT-----DIQKRTLQAIFKE 441 (558)
T ss_pred ----HHhhhcccCCCccccccCCCceeeec-----HHHHHHHHHHHhc
Confidence 22556542 2222333445566653 4456788999965
No 226
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.35 E-value=4.2e+02 Score=30.36 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=3.2
Q ss_pred HHHHhhh
Q 009228 252 HLASVLR 258 (539)
Q Consensus 252 ~V~~ALr 258 (539)
.|+++|.
T Consensus 524 ~i~~~l~ 530 (585)
T PRK14950 524 ITEELLS 530 (585)
T ss_pred HHHHHHH
Confidence 4444444
No 227
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=22.22 E-value=1.6e+02 Score=33.49 Aligned_cols=9 Identities=44% Similarity=1.054 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 009228 78 PPPPAAAMV 86 (539)
Q Consensus 78 pppp~~~~~ 86 (539)
|||||-+.|
T Consensus 250 PPPPP~G~~ 258 (817)
T KOG1925|consen 250 PPPPPKGPF 258 (817)
T ss_pred CCCCCCCCC
Confidence 344444433
No 228
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.18 E-value=1.3e+02 Score=25.90 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=18.0
Q ss_pred EEecCCCCCCHHHHHHHhhhcCC
Q 009228 292 VAENLPEDHCHQNLMKIFSAVGS 314 (539)
Q Consensus 292 yV~nLP~d~t~e~L~e~Fs~fG~ 314 (539)
||-=|.+..++++|++.|+..|.
T Consensus 52 ~V~Fl~~~~s~eev~~ele~mga 74 (88)
T COG4009 52 YVVFLEEVESEEEVERELEDMGA 74 (88)
T ss_pred EEEEEeccCCHHHHHHHHHHhCc
Confidence 44445678899999999998774
No 229
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.15 E-value=2.2e+02 Score=27.06 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=33.2
Q ss_pred EEEecCCCCCCHHHHHHHhhh-cC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 291 VVAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~-fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.|+=-++.+++-.+|++.+++ |+ .|..|..+.-.. | .-=|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---------------g-----~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---------------G-----LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---------------C-----ceEEEEEECCCCcHHHHHH
Confidence 344445678888888887776 44 566665543210 0 1129999987776654433
No 230
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=20.54 E-value=73 Score=34.55 Aligned_cols=7 Identities=0% Similarity=0.007 Sum_probs=2.8
Q ss_pred EEEEeCC
Q 009228 350 AFVEYES 356 (539)
Q Consensus 350 AFVEFet 356 (539)
..+.|++
T Consensus 290 v~~~~k~ 296 (365)
T KOG2945|consen 290 VLHSSKD 296 (365)
T ss_pred eeecccc
Confidence 3344443
No 231
>PRK09752 adhesin; Provisional
Probab=20.05 E-value=94 Score=38.55 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 009228 52 NPQSTQSKPQVQVQVQQPPQRVMMPPPPPPA 82 (539)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~p~~~~~~ppppp~ 82 (539)
.|++++.|.++|+|+|.|++.++++|+|.|.
T Consensus 919 ~Pp~Pp~P~p~P~p~p~p~p~p~p~p~ptP~ 949 (1250)
T PRK09752 919 TPPSPPDPDPTPDPDPTPDPDPTPDPEPTPA 949 (1250)
T ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Done!