Query 009228
Match_columns 539
No_of_seqs 359 out of 2021
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:44:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 1.6E-37 5.4E-42 297.9 14.7 171 192-382 7-184 (193)
2 1s29_A LA protein; winged heli 99.9 1.3E-28 4.4E-33 210.7 5.9 89 191-279 4-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 1.8E-26 6.3E-31 200.2 4.0 86 192-279 9-94 (101)
4 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.1E-17 1.1E-21 150.3 10.3 82 286-384 37-118 (156)
5 4fxv_A ELAV-like protein 1; RN 99.7 1E-16 3.5E-21 137.4 9.7 80 286-382 17-96 (99)
6 3q2s_C Cleavage and polyadenyl 99.7 1.7E-17 5.7E-22 162.9 5.4 81 287-384 67-149 (229)
7 1u6f_A Tcubp1, RNA-binding pro 99.7 3.5E-16 1.2E-20 140.2 10.8 87 284-387 38-124 (139)
8 2fy1_A RNA-binding motif prote 99.7 8.4E-16 2.9E-20 135.0 12.8 84 285-386 4-87 (116)
9 3s8s_A Histone-lysine N-methyl 99.6 3.7E-16 1.3E-20 136.6 9.5 80 287-383 5-84 (110)
10 2dnz_A Probable RNA-binding pr 99.6 1.6E-15 5.4E-20 127.0 12.9 82 287-385 4-85 (95)
11 1x5s_A Cold-inducible RNA-bind 99.6 1.3E-15 4.6E-20 129.2 12.0 83 287-386 11-93 (102)
12 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.1E-16 2.8E-20 126.5 9.9 81 287-384 5-85 (87)
13 1whw_A Hypothetical protein ri 99.6 1.4E-15 4.8E-20 128.4 11.5 84 286-386 6-89 (99)
14 2dgs_A DAZ-associated protein 99.6 1.9E-15 6.5E-20 127.8 12.3 84 286-387 8-91 (99)
15 3ex7_B RNA-binding protein 8A; 99.6 1.2E-15 4.3E-20 134.4 11.4 87 285-388 19-105 (126)
16 1p27_B RNA-binding protein 8A; 99.6 1.8E-15 6.1E-20 129.3 11.8 84 286-386 21-104 (106)
17 2adc_A Polypyrimidine tract-bi 99.6 2.8E-15 9.7E-20 145.3 14.6 74 288-383 151-226 (229)
18 2lxi_A RNA-binding protein 10; 99.6 2.3E-16 7.9E-21 132.8 5.4 79 288-383 1-81 (91)
19 2dgp_A Bruno-like 4, RNA bindi 99.6 2E-15 6.7E-20 129.1 11.2 83 285-384 10-95 (106)
20 2cqd_A RNA-binding region cont 99.6 1.6E-15 5.3E-20 132.1 10.3 82 285-384 14-95 (116)
21 1x5u_A Splicing factor 3B subu 99.6 2E-15 7E-20 128.7 10.8 82 286-384 13-94 (105)
22 4f25_A Polyadenylate-binding p 99.6 1.1E-15 3.6E-20 133.8 9.2 78 288-384 5-82 (115)
23 2do4_A Squamous cell carcinoma 99.6 1.6E-15 5.5E-20 128.5 9.9 82 285-384 14-95 (100)
24 2dgo_A Cytotoxic granule-assoc 99.6 3.4E-15 1.2E-19 129.6 12.0 86 285-387 12-97 (115)
25 2dgu_A Heterogeneous nuclear r 99.6 2.1E-15 7.3E-20 128.8 10.5 76 287-387 10-85 (103)
26 2cph_A RNA binding motif prote 99.6 3.4E-15 1.2E-19 127.5 11.7 85 285-386 12-98 (107)
27 2dnm_A SRP46 splicing factor; 99.6 2E-15 6.7E-20 128.6 10.0 82 286-384 11-92 (103)
28 3md1_A Nuclear and cytoplasmic 99.6 2.5E-15 8.5E-20 122.5 10.1 79 289-384 2-80 (83)
29 1x5t_A Splicing factor 3B subu 99.6 1.5E-15 5.1E-20 127.4 9.0 83 287-386 4-87 (96)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.3E-15 4.5E-20 129.3 8.7 82 287-385 11-92 (102)
31 2d9p_A Polyadenylate-binding p 99.6 3.1E-15 1E-19 127.4 10.9 83 285-386 12-94 (103)
32 2cq0_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 129.6 8.6 82 286-384 13-94 (103)
33 2x1f_A MRNA 3'-END-processing 99.6 2.3E-15 7.9E-20 126.8 9.7 80 288-384 2-81 (96)
34 4a8x_A RNA-binding protein wit 99.6 1.3E-15 4.4E-20 125.3 7.9 82 286-383 2-83 (88)
35 3beg_B Splicing factor, argini 99.6 1.7E-15 5.7E-20 132.8 9.0 69 287-379 15-83 (115)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.6E-15 5.3E-20 124.3 8.2 80 286-382 5-84 (85)
37 1s79_A Lupus LA protein; RRM, 99.6 2.8E-15 9.7E-20 129.6 10.3 81 285-384 8-88 (103)
38 3p5t_L Cleavage and polyadenyl 99.6 9.3E-16 3.2E-20 128.1 7.0 80 289-385 2-83 (90)
39 2dnh_A Bruno-like 5, RNA bindi 99.6 4.5E-15 1.5E-19 126.6 11.4 83 286-386 13-98 (105)
40 2cpz_A CUG triplet repeat RNA- 99.6 1.6E-15 5.4E-20 131.9 8.5 82 286-384 23-104 (115)
41 1oo0_B CG8781-PA, drosophila Y 99.6 3.3E-15 1.1E-19 128.7 10.4 85 285-386 23-107 (110)
42 3ns6_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 130.3 7.6 81 287-384 5-92 (100)
43 1wex_A Hypothetical protein (r 99.6 3.7E-15 1.3E-19 129.4 10.7 75 287-384 14-90 (104)
44 1sjq_A Polypyrimidine tract-bi 99.6 1E-15 3.5E-20 133.8 7.2 74 287-383 15-90 (105)
45 2lkz_A RNA-binding protein 5; 99.6 1.2E-15 4.1E-20 130.4 7.4 79 287-382 8-92 (95)
46 1x4a_A Splicing factor, argini 99.6 3.2E-15 1.1E-19 128.7 10.1 80 285-384 19-98 (109)
47 2ad9_A Polypyrimidine tract-bi 99.6 3.5E-15 1.2E-19 133.1 10.6 79 287-388 30-110 (119)
48 2cq4_A RNA binding motif prote 99.6 1.8E-15 6E-20 131.4 8.4 84 283-384 20-103 (114)
49 2e5h_A Zinc finger CCHC-type a 99.6 2.3E-15 7.7E-20 125.8 8.8 79 287-382 15-93 (94)
50 3r27_A HnRNP L, heterogeneous 99.6 2.9E-15 9.9E-20 129.9 9.7 74 286-382 19-94 (100)
51 1x4h_A RNA-binding protein 28; 99.6 3.8E-15 1.3E-19 128.1 10.3 82 286-384 13-100 (111)
52 3pgw_S U1-70K; protein-RNA com 99.6 8.7E-15 3E-19 156.5 15.3 82 286-384 100-181 (437)
53 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.2E-15 1.8E-19 126.0 10.6 81 285-384 12-92 (103)
54 2la6_A RNA-binding protein FUS 99.6 5.1E-15 1.7E-19 125.3 10.4 80 286-382 11-98 (99)
55 2cq3_A RNA-binding protein 9; 99.6 7.7E-15 2.6E-19 124.9 11.5 84 285-387 12-95 (103)
56 1x4d_A Matrin 3; structural ge 99.6 2.2E-15 7.5E-20 130.8 8.1 74 287-383 14-90 (102)
57 2cpe_A RNA-binding protein EWS 99.6 2.5E-15 8.4E-20 130.1 8.3 84 284-384 11-102 (113)
58 2dnq_A RNA-binding protein 4B; 99.6 8.3E-15 2.9E-19 121.9 11.2 75 286-385 6-80 (90)
59 3ucg_A Polyadenylate-binding p 99.6 2.3E-15 7.9E-20 124.3 7.8 80 285-382 3-82 (89)
60 1wi8_A EIF-4B, eukaryotic tran 99.6 4.4E-15 1.5E-19 126.8 9.7 83 286-386 13-95 (104)
61 2ywk_A Putative RNA-binding pr 99.6 3.1E-15 1.1E-19 125.2 8.4 79 286-382 14-92 (95)
62 2cqc_A Arginine/serine-rich sp 99.6 2.9E-15 9.9E-20 125.1 8.1 80 286-382 13-92 (95)
63 2do0_A HnRNP M, heterogeneous 99.6 9.4E-15 3.2E-19 126.4 11.6 80 287-384 14-93 (114)
64 2kxn_B Transformer-2 protein h 99.6 4E-15 1.4E-19 133.4 9.5 82 286-384 44-125 (129)
65 2khc_A Testis-specific RNP-typ 99.6 2.5E-15 8.4E-20 131.0 7.7 81 285-382 37-117 (118)
66 1x4c_A Splicing factor, argini 99.6 6.8E-15 2.3E-19 127.0 10.4 74 287-384 14-92 (108)
67 2div_A TRNA selenocysteine ass 99.6 3.3E-15 1.1E-19 126.1 8.3 81 286-383 7-92 (99)
68 2jrs_A RNA-binding protein 39; 99.6 6E-15 2E-19 128.0 9.9 82 286-384 24-105 (108)
69 1p1t_A Cleavage stimulation fa 99.6 3E-15 1E-19 127.2 7.9 82 286-384 6-87 (104)
70 2cpf_A RNA binding motif prote 99.6 2.3E-15 7.9E-20 126.8 7.1 84 287-384 4-87 (98)
71 2cq1_A PTB-like protein L; RRM 99.6 5.7E-15 2E-19 127.7 9.6 77 287-386 14-92 (101)
72 1why_A Hypothetical protein ri 99.6 9.3E-15 3.2E-19 123.3 10.7 76 286-384 15-92 (97)
73 3ulh_A THO complex subunit 4; 99.6 6.4E-15 2.2E-19 126.1 9.7 79 286-382 27-105 (107)
74 2dnp_A RNA-binding protein 14; 99.6 6.5E-15 2.2E-19 122.6 9.4 75 286-385 7-81 (90)
75 2dgx_A KIAA0430 protein; RRM d 99.6 6.3E-15 2.2E-19 124.6 9.4 79 287-385 8-90 (96)
76 2cpj_A Non-POU domain-containi 99.6 8.1E-15 2.8E-19 124.1 10.1 77 286-385 13-89 (99)
77 2dgv_A HnRNP M, heterogeneous 99.6 8.8E-15 3E-19 121.7 10.0 79 287-384 7-85 (92)
78 2dhg_A TRNA selenocysteine ass 99.6 7.9E-15 2.7E-19 124.8 10.0 81 286-384 7-89 (104)
79 2kvi_A Nuclear polyadenylated 99.6 1.1E-14 3.8E-19 122.9 10.7 75 286-385 8-83 (96)
80 1whx_A Hypothetical protein ri 99.6 1.1E-14 3.7E-19 126.9 10.9 76 286-384 8-83 (111)
81 1x4f_A Matrin 3; structural ge 99.6 6.5E-15 2.2E-19 130.1 8.9 75 287-384 24-101 (112)
82 2dgt_A RNA-binding protein 30; 99.6 1.1E-14 3.8E-19 121.7 9.7 75 285-384 7-81 (92)
83 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.2E-15 1.8E-19 118.9 7.3 76 289-382 1-76 (77)
84 1x4g_A Nucleolysin TIAR; struc 99.6 7E-15 2.4E-19 126.8 8.6 77 285-384 22-98 (109)
85 2err_A Ataxin-2-binding protei 99.6 6.8E-15 2.3E-19 127.5 8.4 81 285-384 26-106 (109)
86 2dng_A Eukaryotic translation 99.6 1.2E-14 4.2E-19 123.8 9.8 80 286-384 13-92 (103)
87 2rs2_A Musashi-1, RNA-binding 99.5 8.8E-15 3E-19 127.0 8.7 83 285-385 22-104 (109)
88 2e5j_A Methenyltetrahydrofolat 99.5 1.3E-14 4.4E-19 122.6 9.5 77 286-384 17-93 (97)
89 2cpi_A CCR4-NOT transcription 99.5 4.7E-15 1.6E-19 128.8 7.0 86 285-384 12-100 (111)
90 2hvz_A Splicing factor, argini 99.5 2.1E-14 7.3E-19 121.7 10.9 76 289-386 1-76 (101)
91 2wbr_A GW182, gawky, LD47780P; 99.5 6.8E-15 2.3E-19 125.0 7.7 73 288-383 7-79 (89)
92 3s7r_A Heterogeneous nuclear r 99.5 8E-15 2.7E-19 120.9 7.9 79 285-381 8-86 (87)
93 2jwn_A Embryonic polyadenylate 99.5 9.4E-15 3.2E-19 128.4 8.8 83 283-383 31-113 (124)
94 3n9u_C Cleavage and polyadenyl 99.5 8.1E-15 2.8E-19 135.9 8.8 81 287-384 54-136 (156)
95 2kt5_A RNA and export factor-b 99.5 2.2E-14 7.5E-19 126.4 11.1 82 286-385 33-114 (124)
96 1x4b_A Heterogeneous nuclear r 99.5 8.6E-15 2.9E-19 127.4 8.2 82 284-383 23-104 (116)
97 2dis_A Unnamed protein product 99.5 1.5E-14 5.3E-19 124.1 9.7 82 286-384 6-91 (109)
98 1x5o_A RNA binding motif, sing 99.5 2E-14 6.8E-19 124.5 10.4 81 285-383 22-110 (114)
99 2kn4_A Immunoglobulin G-bindin 99.5 3.6E-14 1.2E-18 129.5 12.6 82 286-384 68-149 (158)
100 2ki2_A SS-DNA binding protein 99.5 5.4E-15 1.8E-19 122.7 6.5 80 289-386 2-81 (90)
101 1x4e_A RNA binding motif, sing 99.5 6.2E-15 2.1E-19 121.1 6.7 71 287-374 4-74 (85)
102 2ytc_A PRE-mRNA-splicing facto 99.5 9.5E-15 3.3E-19 119.7 7.8 74 286-382 10-84 (85)
103 2krb_A Eukaryotic translation 99.5 7.7E-15 2.6E-19 120.0 6.9 73 288-379 1-80 (81)
104 2cqp_A RNA-binding protein 12; 99.5 5.5E-15 1.9E-19 124.5 6.2 80 287-383 14-93 (98)
105 2lea_A Serine/arginine-rich sp 99.5 1.2E-14 4.3E-19 131.0 8.9 83 285-384 44-126 (135)
106 2ek1_A RNA-binding protein 12; 99.5 5.6E-15 1.9E-19 123.6 5.9 79 287-382 14-92 (95)
107 2mss_A Protein (musashi1); RNA 99.5 1.3E-14 4.4E-19 116.4 7.7 74 290-381 1-74 (75)
108 2qfj_A FBP-interacting repress 99.5 9.6E-15 3.3E-19 137.9 7.8 84 285-385 122-205 (216)
109 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.2E-14 4E-19 123.9 7.5 82 285-384 16-97 (100)
110 3md3_A Nuclear and cytoplasmic 99.5 3.1E-14 1.1E-18 128.3 10.8 82 285-383 84-165 (166)
111 2m2b_A RNA-binding protein 10; 99.5 8.7E-15 3E-19 130.7 7.0 82 285-384 20-107 (131)
112 2jvo_A Nucleolar protein 3; nu 99.5 1.3E-14 4.4E-19 126.0 7.8 76 284-384 27-102 (108)
113 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.4E-14 8.1E-19 132.7 10.1 86 286-388 70-155 (165)
114 2la4_A Nuclear and cytoplasmic 99.5 9.9E-15 3.4E-19 123.8 6.9 73 287-382 26-98 (101)
115 2jvr_A Nucleolar protein 3; RN 99.5 1.2E-14 4E-19 127.9 7.6 76 287-383 27-103 (111)
116 2cqh_A IGF-II mRNA-binding pro 99.5 1.5E-14 5.1E-19 120.9 7.8 75 287-385 7-83 (93)
117 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.5E-14 5.2E-19 128.8 8.3 79 286-381 61-139 (140)
118 3lqv_A PRE-mRNA branch site pr 99.5 4.7E-14 1.6E-18 122.4 11.0 78 287-384 7-84 (115)
119 2dh8_A DAZ-associated protein 99.5 6.8E-15 2.3E-19 125.7 5.6 80 286-383 14-93 (105)
120 2xnq_A Nuclear polyadenylated 99.5 3.1E-14 1.1E-18 121.0 9.5 74 285-383 19-93 (97)
121 4f02_A Polyadenylate-binding p 99.5 2.5E-14 8.4E-19 137.2 9.9 115 249-384 66-180 (213)
122 1wez_A HnRNP H', FTP-3, hetero 99.5 2.9E-14 9.8E-19 122.7 9.2 79 286-384 13-91 (102)
123 1fj7_A Nucleolin RBD1, protein 99.5 7.2E-15 2.5E-19 124.7 5.3 81 285-384 14-94 (101)
124 1wg5_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 121.8 9.4 79 286-383 13-92 (104)
125 2cqg_A TDP-43, TAR DNA-binding 99.5 3.7E-14 1.3E-18 120.7 9.2 79 286-383 13-91 (103)
126 2cpd_A Apobec-1 stimulating pr 99.5 4.4E-14 1.5E-18 119.5 9.6 73 286-383 13-87 (99)
127 2cpx_A Hypothetical protein FL 99.5 5E-14 1.7E-18 122.0 9.9 80 286-386 23-106 (115)
128 3nmr_A Cugbp ELAV-like family 99.5 6.1E-14 2.1E-18 127.7 10.8 79 286-382 93-174 (175)
129 2i2y_A Fusion protein consists 99.5 1.4E-13 4.6E-18 125.2 12.9 78 285-384 70-147 (150)
130 2dgw_A Probable RNA-binding pr 99.5 3.5E-14 1.2E-18 118.2 8.3 79 286-384 8-86 (91)
131 1l3k_A Heterogeneous nuclear r 99.5 5.5E-14 1.9E-18 130.8 10.5 84 286-387 102-185 (196)
132 2cpy_A RNA-binding protein 12; 99.5 9.4E-15 3.2E-19 127.4 4.9 82 286-386 13-95 (114)
133 2db1_A Heterogeneous nuclear r 99.5 1.5E-14 5.1E-19 127.4 6.0 79 286-383 15-96 (118)
134 2a3j_A U1 small nuclear ribonu 99.5 7E-14 2.4E-18 125.7 10.3 78 287-384 28-109 (127)
135 2lcw_A RNA-binding protein FUS 99.2 2E-15 6.9E-20 131.6 0.0 84 285-385 4-95 (116)
136 1wf1_A RNA-binding protein RAL 99.5 4.5E-14 1.5E-18 121.9 8.3 72 287-383 26-98 (110)
137 1b7f_A Protein (SXL-lethal pro 99.5 1.7E-13 5.7E-18 124.2 12.4 79 286-381 87-167 (168)
138 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 132.3 5.3 80 286-385 44-123 (139)
139 1iqt_A AUF1, heterogeneous nuc 99.5 2.3E-14 7.8E-19 114.8 5.8 74 290-381 1-74 (75)
140 2nlw_A Eukaryotic translation 99.5 3.3E-14 1.1E-18 122.3 6.8 78 287-383 14-98 (105)
141 3pgw_A U1-A; protein-RNA compl 99.5 7.5E-14 2.6E-18 138.2 10.4 75 287-383 206-281 (282)
142 2yh0_A Splicing factor U2AF 65 99.5 7.3E-14 2.5E-18 130.1 9.7 82 286-384 112-193 (198)
143 1fxl_A Paraneoplastic encephal 99.5 2.6E-13 9E-18 122.3 12.9 79 285-380 85-163 (167)
144 2fc9_A NCL protein; structure 99.5 5.6E-14 1.9E-18 119.1 8.0 78 286-384 13-90 (101)
145 2e44_A Insulin-like growth fac 99.5 1.3E-13 4.3E-18 115.7 10.0 78 287-385 14-92 (96)
146 2hzc_A Splicing factor U2AF 65 99.5 6.6E-14 2.2E-18 115.0 8.0 71 286-380 4-85 (87)
147 2lmi_A GRSF-1, G-rich sequence 99.5 2.9E-14 9.9E-19 123.0 6.1 80 286-384 9-91 (107)
148 2hgl_A HNRPF protein, heteroge 99.5 2.9E-14 9.9E-19 129.7 6.3 79 286-383 42-123 (136)
149 2g4b_A Splicing factor U2AF 65 99.5 1.3E-13 4.3E-18 125.7 10.4 113 248-382 59-171 (172)
150 1nu4_A U1A RNA binding domain; 99.5 6.1E-14 2.1E-18 117.7 7.6 79 286-384 6-88 (97)
151 2dnn_A RNA-binding protein 12; 99.5 5.5E-14 1.9E-18 123.1 7.5 76 287-382 15-90 (109)
152 1wel_A RNA-binding protein 12; 99.5 2.2E-14 7.7E-19 126.7 4.8 81 286-384 23-103 (124)
153 1fjc_A Nucleolin RBD2, protein 99.5 5.1E-14 1.7E-18 118.1 6.6 77 285-383 13-89 (96)
154 4f02_A Polyadenylate-binding p 99.5 1.2E-13 4.3E-18 132.3 9.8 80 287-383 14-93 (213)
155 2f3j_A RNA and export factor b 99.5 1.7E-13 5.9E-18 129.3 10.6 80 287-384 87-166 (177)
156 2fc8_A NCL protein; structure 99.5 1.3E-13 4.5E-18 116.9 8.7 79 286-384 13-91 (102)
157 1x5p_A Negative elongation fac 99.5 1.3E-13 4.5E-18 116.3 8.5 72 287-383 14-85 (97)
158 1sjr_A Polypyrimidine tract-bi 99.4 2.8E-13 9.4E-18 127.3 11.0 75 288-383 46-122 (164)
159 2cjk_A Nuclear polyadenylated 99.4 2.1E-13 7.3E-18 123.6 9.8 112 249-384 54-165 (167)
160 2e5g_A U6 snRNA-specific termi 99.4 1.6E-13 5.6E-18 115.1 8.1 73 287-382 7-79 (94)
161 2xs2_A Deleted in azoospermia- 99.4 8.8E-14 3E-18 118.1 6.3 81 285-385 6-86 (102)
162 1fxl_A Paraneoplastic encephal 99.4 2.8E-13 9.6E-18 122.1 9.8 79 288-383 2-80 (167)
163 2cq2_A Hypothetical protein LO 99.4 1E-13 3.5E-18 122.9 6.6 63 287-372 24-88 (114)
164 1wg1_A KIAA1579 protein, homol 99.4 1.3E-13 4.5E-18 114.5 6.9 74 287-384 4-77 (88)
165 3md3_A Nuclear and cytoplasmic 99.4 2.8E-13 9.4E-18 122.0 9.3 78 289-384 1-78 (166)
166 3egn_A RNA-binding protein 40; 99.4 1.8E-13 6.2E-18 123.4 7.6 79 287-385 44-130 (143)
167 3tyt_A Heterogeneous nuclear r 99.4 2.9E-13 1E-17 130.2 9.3 75 287-383 3-78 (205)
168 3d2w_A TAR DNA-binding protein 99.4 3.9E-13 1.3E-17 112.7 8.8 73 286-384 9-81 (89)
169 2dnl_A Cytoplasmic polyadenyla 99.4 2.8E-13 9.5E-18 118.1 8.1 68 287-369 7-74 (114)
170 2bz2_A Negative elongation fac 99.4 6E-13 2.1E-17 118.0 9.6 88 272-385 24-111 (121)
171 1wf0_A TDP-43, TAR DNA-binding 99.4 4.5E-13 1.5E-17 110.9 8.3 72 287-384 4-75 (88)
172 2qfj_A FBP-interacting repress 99.4 6.3E-13 2.2E-17 125.4 10.3 81 285-382 25-105 (216)
173 2hgm_A HNRPF protein, heteroge 99.4 2.4E-13 8.3E-18 122.3 7.0 77 287-383 41-119 (126)
174 1fje_B Nucleolin RBD12, protei 99.4 5.3E-13 1.8E-17 122.3 9.4 77 285-383 96-172 (175)
175 1b7f_A Protein (SXL-lethal pro 99.4 4.3E-13 1.5E-17 121.5 8.5 81 287-384 2-82 (168)
176 1qm9_A Polypyrimidine tract-bi 99.4 1.5E-12 5.2E-17 122.0 12.3 75 287-383 119-195 (198)
177 2dha_A FLJ20171 protein; RRM d 99.4 1.4E-13 4.8E-18 123.1 4.9 77 287-382 22-102 (123)
178 2e5i_A Heterogeneous nuclear r 99.4 1.2E-12 4.2E-17 117.4 11.0 71 289-382 26-99 (124)
179 3nmr_A Cugbp ELAV-like family 99.4 1.1E-12 3.7E-17 119.4 10.4 72 287-373 2-73 (175)
180 2ghp_A U4/U6 snRNA-associated 99.4 8E-13 2.7E-17 131.4 10.3 82 286-384 208-290 (292)
181 3zzy_A Polypyrimidine tract-bi 99.4 9.5E-13 3.2E-17 119.2 9.8 73 288-382 28-103 (130)
182 1l3k_A Heterogeneous nuclear r 99.4 7.9E-13 2.7E-17 122.9 9.0 82 285-384 10-91 (196)
183 3u1l_A PRE-mRNA-splicing facto 99.4 9.4E-13 3.2E-17 130.7 9.3 79 285-386 131-230 (240)
184 2diu_A KIAA0430 protein; struc 99.4 1.5E-12 5E-17 111.9 8.7 72 288-386 8-85 (96)
185 2adc_A Polypyrimidine tract-bi 99.3 2.8E-12 9.6E-17 124.2 10.5 78 285-384 31-109 (229)
186 1qm9_A Polypyrimidine tract-bi 99.3 1.7E-12 5.8E-17 121.7 8.6 76 287-384 2-78 (198)
187 2pe8_A Splicing factor 45; RRM 99.3 4.4E-12 1.5E-16 110.2 10.2 82 286-383 6-92 (105)
188 3pgw_A U1-A; protein-RNA compl 99.3 3.4E-12 1.1E-16 126.3 10.4 79 286-384 7-89 (282)
189 3sde_A Paraspeckle component 1 99.3 3.1E-12 1.1E-16 126.4 8.9 80 287-384 95-178 (261)
190 3smz_A Protein raver-1, ribonu 99.3 4.9E-12 1.7E-16 125.3 10.1 82 285-384 181-263 (284)
191 2cjk_A Nuclear polyadenylated 99.3 2.8E-12 9.7E-17 116.2 7.1 76 287-381 2-77 (167)
192 2j8a_A Histone-lysine N-methyl 99.3 2.8E-12 9.6E-17 116.2 5.7 77 289-382 3-93 (136)
193 3sde_A Paraspeckle component 1 99.3 8.7E-12 3E-16 123.2 9.7 76 285-383 19-94 (261)
194 3smz_A Protein raver-1, ribonu 99.3 1.8E-11 6E-16 121.3 11.2 82 287-385 94-175 (284)
195 2dit_A HIV TAT specific factor 99.2 1.5E-11 5.3E-16 106.8 8.4 78 286-384 13-101 (112)
196 2g4b_A Splicing factor U2AF 65 99.2 1.5E-11 5.1E-16 111.9 8.0 72 287-382 3-85 (172)
197 3tyt_A Heterogeneous nuclear r 99.2 1.3E-11 4.5E-16 118.7 6.9 71 287-376 122-194 (205)
198 2ghp_A U4/U6 snRNA-associated 99.2 4E-11 1.4E-15 119.2 10.0 80 287-384 116-196 (292)
199 3v4m_A Splicing factor U2AF 65 99.2 4.3E-11 1.5E-15 103.8 8.6 82 287-383 4-95 (105)
200 2yh0_A Splicing factor U2AF 65 99.2 2.4E-11 8.3E-16 113.0 7.2 73 287-383 3-86 (198)
201 1fje_B Nucleolin RBD12, protei 99.2 8.7E-12 3E-16 114.2 3.1 80 285-383 10-89 (175)
202 3tht_A Alkylated DNA repair pr 99.1 6E-11 2E-15 123.4 7.8 65 286-373 16-82 (345)
203 3ue2_A Poly(U)-binding-splicin 99.1 9.4E-11 3.2E-15 104.1 7.4 85 286-383 18-107 (118)
204 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.9E-10 1.3E-14 97.3 10.5 65 298-386 27-91 (100)
205 1jmt_A Splicing factor U2AF 35 99.1 5E-11 1.7E-15 103.1 3.9 71 293-381 20-102 (104)
206 3s6e_A RNA-binding protein 39; 99.0 6.7E-10 2.3E-14 98.1 8.9 77 286-383 5-91 (114)
207 1owx_A Lupus LA protein, SS-B, 98.9 2.9E-09 9.9E-14 95.3 8.9 76 286-384 16-95 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.6 6.7E-08 2.3E-12 82.2 7.4 74 288-387 7-88 (91)
209 3dxb_A Thioredoxin N-terminall 98.5 3.4E-07 1.2E-11 87.9 8.4 71 300-383 141-211 (222)
210 1ufw_A Synaptojanin 2; RNP dom 98.3 2.9E-07 9.8E-12 78.9 4.5 69 288-382 15-92 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.6 0.00013 4.4E-09 64.1 7.5 72 287-381 20-96 (117)
212 2dhx_A Poly (ADP-ribose) polym 96.6 0.011 3.7E-07 51.3 9.4 54 288-366 8-66 (104)
213 1whv_A Poly(A)-specific ribonu 96.5 0.0056 1.9E-07 52.6 7.0 64 290-383 18-81 (100)
214 1wey_A Calcipressin 1; structu 96.0 0.0065 2.2E-07 52.8 5.0 72 289-383 6-82 (104)
215 1uw4_A UPF3X; nonsense mediate 96.0 0.02 7E-07 48.4 7.8 68 289-371 2-69 (91)
216 1wwh_A Nucleoporin 35, nucleop 95.9 0.018 6.1E-07 51.1 7.5 62 286-372 22-83 (119)
217 3ctr_A Poly(A)-specific ribonu 95.7 0.012 4E-07 50.8 5.1 53 291-368 8-60 (101)
218 3pq1_A Poly(A) RNA polymerase; 95.7 0.0055 1.9E-07 66.0 3.6 58 285-365 50-107 (464)
219 2kn4_A Immunoglobulin G-bindin 93.4 0.042 1.4E-06 49.2 3.2 26 346-371 12-37 (158)
220 2l08_A Regulator of nonsense t 93.3 0.12 3.9E-06 44.4 5.5 69 288-371 9-77 (97)
221 1b34_A Protein (small nuclear 92.2 0.027 9.1E-07 49.8 0.0 7 350-356 66-72 (119)
222 2i2y_A Fusion protein consists 90.1 0.13 4.3E-06 45.8 2.3 34 347-381 13-47 (150)
223 3p3d_A Nucleoporin 53; structu 89.1 0.41 1.4E-05 43.1 4.9 81 288-374 7-88 (132)
224 3d45_A Poly(A)-specific ribonu 88.9 1 3.5E-05 48.8 8.7 57 288-370 440-496 (507)
225 3htx_A HEN1; HEN1, small RNA m 88.3 0.37 1.3E-05 55.6 4.9 90 191-281 101-209 (950)
226 4f25_A Polyadenylate-binding p 81.0 0.56 1.9E-05 39.9 1.6 19 286-304 95-113 (115)
227 3na8_A Putative dihydrodipicol 66.4 8.7 0.0003 38.8 6.4 18 147-164 5-22 (315)
228 1d1d_A Protein (capsid protein 65.4 4.1 0.00014 40.6 3.6 28 187-214 30-59 (262)
229 1wfx_A Probable RNA 2'-phospho 64.6 3 0.0001 39.5 2.3 49 224-275 22-74 (186)
230 2e1c_A Putative HTH-type trans 62.5 87 0.003 28.3 11.9 49 300-369 98-146 (171)
231 1jh4_B PAIP1, polyadenylate-bi 61.8 3.5 0.00012 26.8 1.5 17 37-53 3-19 (26)
232 2l4h_A Calcium and integrin-bi 58.2 2 6.8E-05 40.2 -0.2 10 230-239 74-83 (214)
233 3fry_A Probable copper-exporti 55.9 30 0.001 26.0 6.5 56 287-366 5-60 (73)
234 1i4w_A Mitochondrial replicati 46.7 18 0.0006 37.4 4.7 23 289-311 143-165 (353)
235 3dxs_X Copper-transporting ATP 43.2 80 0.0027 23.2 7.0 56 289-367 4-63 (74)
236 2i7a_A Calpain 13; calcium-dep 41.9 15 0.00051 33.2 3.0 16 297-312 109-124 (174)
237 3lqv_A PRE-mRNA branch site pr 40.5 1.3 4.5E-05 37.1 -4.1 21 294-314 89-109 (115)
238 2wk1_A NOVP; transferase, O-me 34.8 36 0.0012 33.9 4.7 22 301-322 173-195 (282)
239 2qrj_A Saccharopine dehydrogen 34.5 22 0.00074 37.4 3.2 17 188-204 37-53 (394)
240 4a4j_A Pacszia, cation-transpo 33.0 97 0.0033 22.3 5.9 33 289-321 4-36 (69)
241 4gyx_A Type III collagen fragm 32.4 22 0.00076 23.4 1.7 19 513-531 4-22 (31)
242 2pk2_A Cyclin-T1, protein TAT; 31.9 9.7 0.00033 39.2 0.0 12 356-367 230-241 (358)
243 2h2k_A Protein S100-A13; calci 31.9 30 0.001 29.0 3.1 47 192-240 40-87 (106)
244 3fwy_A Light-independent proto 30.8 10 0.00036 38.1 0.0 16 176-194 45-60 (314)
245 3odm_A Pepcase, PEPC, phosphoe 30.6 9.1 0.00031 41.9 -0.5 15 353-367 186-200 (560)
246 2yln_A Putative ABC transporte 27.0 13 0.00045 35.4 0.0 12 129-140 3-14 (283)
247 4ec6_A Putative uncharacterize 26.1 12 0.00041 34.6 -0.5 26 200-225 60-87 (161)
248 3e4o_A C4-dicarboxylate transp 26.1 38 0.0013 33.7 3.1 57 147-208 5-61 (305)
249 3lpe_A Putative transcription 25.9 1.1E+02 0.0038 25.1 5.5 22 347-368 50-71 (92)
250 4e8u_A Putative uncharacterize 25.9 1.7E+02 0.006 27.1 7.4 58 288-365 12-81 (172)
251 1yg0_A COP associated protein; 25.5 1.7E+02 0.0057 20.1 6.2 55 290-367 4-61 (66)
252 3ied_A Heat shock protein; HSP 25.2 70 0.0024 31.9 4.8 26 287-312 128-153 (272)
253 2yjp_A Putative ABC transporte 24.2 16 0.00055 34.8 0.0 10 284-293 160-169 (291)
254 2d2a_A SUFA protein; iron-sulf 24.1 33 0.0011 30.9 2.1 18 189-206 39-56 (145)
255 4g1u_A Hemin transport system 22.9 18 0.0006 37.5 0.0 10 130-141 3-12 (357)
256 2l3m_A Copper-ION-binding prot 22.7 2E+02 0.007 20.1 6.6 33 289-321 7-39 (71)
257 1ydx_A Type I restriction enzy 22.1 19 0.00064 36.5 0.0 10 130-141 3-12 (406)
258 3uau_A JLPA, surface-exposed l 21.4 20 0.00068 36.0 0.0 10 130-141 3-12 (379)
259 4axs_A Carbamate kinase; oxido 21.4 20 0.00068 36.7 0.0 16 354-369 229-244 (332)
260 1kvi_A Copper-transporting ATP 21.2 2.4E+02 0.0082 20.4 7.7 57 288-367 9-69 (79)
261 2xmw_A PACS-N, cation-transpor 21.0 2.2E+02 0.0075 19.8 7.3 33 289-321 5-37 (71)
262 1q8l_A Copper-transporting ATP 21.0 2.7E+02 0.0091 20.8 7.8 56 289-367 11-70 (84)
263 4faj_A PRGZ; substrate binding 20.9 21 0.00071 36.1 0.0 6 313-318 359-364 (564)
264 3tla_A MCCF; serine protease, 20.7 21 0.00071 37.1 0.0 12 195-206 60-71 (371)
265 2es4_D Lipase chaperone; prote 20.7 21 0.00072 36.6 0.0 12 200-211 84-95 (332)
266 3fia_A Intersectin-1; EH 1 dom 20.7 14 0.00048 32.4 -1.1 11 229-239 46-56 (121)
267 1cpz_A Protein (COPZ); copper 20.4 2.2E+02 0.0075 19.6 7.3 32 290-321 3-34 (68)
268 3jrx_A Acetyl-COA carboxylase 20.3 21 0.00073 39.2 0.0 7 39-45 448-454 (587)
269 1osd_A MERP, hypothetical prot 20.1 2.3E+02 0.008 19.8 6.9 56 289-367 5-64 (72)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=1.6e-37 Score=297.92 Aligned_cols=171 Identities=26% Similarity=0.393 Sum_probs=146.8
Q ss_pred CCChHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcC--CceEEeecc
Q 009228 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS--SKLVVSEDG 269 (539)
Q Consensus 192 ~~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S--~~LeVsedg 269 (539)
.-.++++.+|++||||||||+||.+|+||+++|.++ +|||+|.+|++|+|||.|+.|.+.|++||+.| ..|++++++
T Consensus 7 ~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~ 85 (193)
T 2voo_A 7 EKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDK 85 (193)
T ss_dssp --CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEeccc
Confidence 345789999999999999999999999999999766 99999999999999999999999999999999 899999999
Q ss_pred cccccCC--CCcch---hhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCccc
Q 009228 270 KKIKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLF 344 (539)
Q Consensus 270 ~kVRR~~--Pl~e~---~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~ 344 (539)
.+|||.. |+++. ..++...+||||+|||.++|+++|+++|+.||.|..|+|+++.+ +
T Consensus 86 ~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-----------~------- 147 (193)
T 2voo_A 86 TKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-----------K------- 147 (193)
T ss_dssp SEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-----------C-------
T ss_pred ceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-----------C-------
Confidence 9999984 44332 23566789999999999999999999999999999999976531 1
Q ss_pred CccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009228 345 SNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 345 ~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~ 382 (539)
..||||||+|++.++|++||+.++ ..+.++.|+|...
T Consensus 148 ~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 148 AFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred CcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 238999999999999999998665 4666666666543
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.95 E-value=1.3e-28 Score=210.73 Aligned_cols=89 Identities=35% Similarity=0.610 Sum_probs=86.2
Q ss_pred CCCChHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeeccc
Q 009228 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (539)
Q Consensus 191 ~~~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~ 270 (539)
..+++++..+|++||||||||+||.+|+||+++|.++.||||+|++|++|+|||+|+.|.++|++||+.|..|+|++||+
T Consensus 4 ~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~ 83 (92)
T 1s29_A 4 MPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGL 83 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 009228 271 KIKRQNPLT 279 (539)
Q Consensus 271 kVRR~~Pl~ 279 (539)
+|||+.||+
T Consensus 84 ~VRR~~PlP 92 (92)
T 1s29_A 84 MVRRRDPLP 92 (92)
T ss_dssp EEEESSCCC
T ss_pred EEeCCCCCC
Confidence 999999875
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.92 E-value=1.8e-26 Score=200.20 Aligned_cols=86 Identities=28% Similarity=0.418 Sum_probs=81.0
Q ss_pred CCChHHHHHHHhhhhhhccCCCcCCChHHHHhhccCCCCceecccccchhhHHHhhcCHHHHHHhhhcCCceEEeecccc
Q 009228 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKK 271 (539)
Q Consensus 192 ~~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasFkKmK~Lt~d~~~V~~ALr~S~~LeVsedg~k 271 (539)
..+++++++|++||||||||+||.+|+||+++| +.||||+|++|++|+|||+|+.|.++|++||+.|..|+|++||++
T Consensus 9 ~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~k 86 (101)
T 2cqk_A 9 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEK 86 (101)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSE
T ss_pred CCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCe
Confidence 356788899999999999999999999999996 689999999999999999999999999999999999999999999
Q ss_pred cccCCCCc
Q 009228 272 IKRQNPLT 279 (539)
Q Consensus 272 VRR~~Pl~ 279 (539)
|||+.++.
T Consensus 87 VRr~~~~~ 94 (101)
T 2cqk_A 87 VRPSHKRC 94 (101)
T ss_dssp EEECCSCC
T ss_pred eeeCCCCC
Confidence 99998755
No 4
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=3.1e-17 Score=150.30 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=71.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||+|+.|+|+.+..++ ..||||||+|++.++|++||+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK-----------------TACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997654221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 100 ~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp HTTTSEETTEECEEEEESC
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999998888888887753
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=137.38 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=70.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+.++|||+|||.++|+++|+++|++||+|+.|+|++++.++ ..||||||+|++.++|++||+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kG~afV~f~~~~~A~~Ai~ 79 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG-----------------HSLGYGFVNYVTAKDAERAIN 79 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCC-----------------cccccEEEEECCHHHHHHHHH
Confidence 356799999999999999999999999999999998764321 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|.++
T Consensus 80 ~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 80 TLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEECCEEEEEEEe
Confidence 99999988888888775
No 6
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=1.7e-17 Score=162.93 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=71.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG--~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..++|||+||++++|+++|+++|++|| +|+.|+|++++.++ ..||||||+|++.++|++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg-----------------~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-----------------QSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTC-----------------CEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 567999999999999999999999999 99999998764321 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++.|+|.++..
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 99999999999999998754
No 7
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=140.18 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=74.3
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
+....++|||+||+.++++++|+++|+.||+|+.|+|+.++.++ ..||||||+|++.++|++|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETR-----------------QSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTT-----------------EEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHH
Confidence 44567899999999999999999999999999999998653211 1389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeecCC
Q 009228 364 IAELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~~~~ 387 (539)
|+.||+..++++.|+|.++.....
T Consensus 101 ~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 101 IAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp HHHTTTEECSSCEEEEEESSCCCC
T ss_pred HHHhCCCEECCeEEEEEECCCCCC
Confidence 999999998888888888765433
No 8
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=8.4e-16 Score=134.99 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=73.6
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|++||.|+.|+|+.+. + + ..+|||||+|++.++|++||
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~F~~~~~A~~Ai 65 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-T----------S-------KSRGFAFITFENPADAKNAA 65 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-T----------T-------TCCCEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C----------C-------CcccEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999998653 1 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~ 386 (539)
+.||+..+.++.|+|.++....
T Consensus 66 ~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 66 KDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HHCSSCBCSSSBCEEEECCCSS
T ss_pred HHhCCCEECCEEEEEEECCCCC
Confidence 9999999999999999886544
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=136.61 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=71.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||++++++++|+++|++||.|+.|+|+++..++ .+||||||+|++.++|++||+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg-----------------~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTR-----------------KHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCC-----------------ceeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764321 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.++.|+|.++.
T Consensus 68 lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp HTTCEETTEECEEEECS
T ss_pred hCCCEECCeEEEEEECC
Confidence 99999988888888764
No 10
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=126.98 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=72.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+++..++ ..+|||||+|++.++|++||+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG-----------------RSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSC-----------------CCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCC-----------------ceeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998754221 2388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009228 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~ 385 (539)
||+..+.++.|+|.++..+
T Consensus 67 l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp HTTCCSSSSCCEEEESSCC
T ss_pred hCCCeeCCcEEEEEEcccc
Confidence 9999999989999887543
No 11
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=129.22 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=72.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|+.|+|+.+..++ ..+|||||+|++.++|++||+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-----------------RSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSC-----------------SCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997653211 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009228 367 LNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~~ 386 (539)
||+..+.++.|+|.++....
T Consensus 74 l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 74 MNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HTTCCTTSCCCEEEEEECCC
T ss_pred hCCCEECCeEEEEEECCCCC
Confidence 99999999999999886544
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=126.48 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=70.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|..|+|.++..++ ..+|||||+|++.++|++|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATG-----------------KSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653211 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..++++.|+|.++..
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999998888888887754
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=128.39 Aligned_cols=84 Identities=25% Similarity=0.197 Sum_probs=71.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ ..+|||||+|++.++|++||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTK-----------------KPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTC-----------------CCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~ 386 (539)
.||+..+.++.|+|.++....
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCS
T ss_pred HhCCCEECCcEEEEEEcCCCc
Confidence 999999888888887765433
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=127.79 Aligned_cols=84 Identities=14% Similarity=0.227 Sum_probs=72.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+++..++ ..+|||||+|++.++|++||+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ-----------------RPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTC-----------------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CCCceEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~~ 387 (539)
||+..+.++.|+|.++..+..
T Consensus 71 -~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 71 -MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp -HCCCBSSSCBCEEEECCCCCC
T ss_pred -hCCCEECCeEEEEEECCCCcc
Confidence 999999988899988765433
No 15
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=1.2e-15 Score=134.40 Aligned_cols=87 Identities=23% Similarity=0.351 Sum_probs=75.2
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|++||.|..|.|..+..++ ..+|||||+|++.++|++||
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 81 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-----------------YLKGYTLVEYETYKEAQAAM 81 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTS-----------------SBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997653211 23889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecCCC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~~k 388 (539)
+.||+..+.++.|+|.++.....+
T Consensus 82 ~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 82 EGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHhCCCeeCCeEEEEEEecCCCCC
Confidence 999999999999999988765544
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=129.32 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=73.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++||+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-----------------YLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-----------------SEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC-----------------ceeeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997654221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~ 386 (539)
.||+..+.++.|+|.++..+.
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp HHTTCBSSSSBCEEEESEESS
T ss_pred HhcCCEECCcEEEEEeecCCC
Confidence 999999999999998876543
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=2.8e-15 Score=145.30 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=66.7
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.++|||+|||.++++++|+++|+.|| +|..|+|+.. .+|||||+|++.++|++|++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999999 9999999531 278999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 009228 367 LNDEGNW-RSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~-~~glrV~l~~ 383 (539)
||+..+. ++.|+|.++.
T Consensus 209 l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 209 LHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp HTTCBSSSSCBCEEEECS
T ss_pred HCCCccCCCCeEEEEEec
Confidence 9999988 7788887764
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=2.3e-16 Score=132.84 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=64.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
+++|||+|||.++|+++|+++|++|| +|+.|+|++++.++ .+||||||+|++.|+|++||+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~-----------------~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSG-----------------QSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSC-----------------CCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCC-----------------CcCceEEEEecCHHHHHHHHHh
Confidence 46999999999999999999999999 89999997764322 2389999999999999999997
Q ss_pred HcC-CCCCCCceEEEEee
Q 009228 367 LND-EGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~-~~~~~~glrV~l~~ 383 (539)
|++ ..+.++.|+|.++.
T Consensus 64 ~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp TTTEEEETTEEEEEECCC
T ss_pred cCCCeEECCEEEEEEEcC
Confidence 753 44555556665543
No 19
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=2e-15 Score=129.07 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=70.7
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...++|||+|||.++++++|+++|++||.|..|+|+.+..++ ..||||||+|++.++|++||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG-----------------MHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSC-----------------SCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 4467899999999999999999999999999999997653221 23899999999999999999
Q ss_pred HHHcCCCC---CCCceEEEEeee
Q 009228 365 AELNDEGN---WRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~---~~~glrV~l~~~ 384 (539)
+.||+..+ .++.|+|.++..
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCC
T ss_pred HHhcCCcccCCCCceEEEEECCc
Confidence 99999886 667788777654
No 20
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=132.10 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=69.6
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...++|||+|||.++|+++|+++|++||.|+.|+|++++.++ ..+|||||+|++.++|++||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG-----------------KSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSC-----------------CCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999999999997653221 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.|++ .+.++.|+|.++..
T Consensus 77 ~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 77 KDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp TCSSC-EETTEECEEEESTT
T ss_pred HhCCC-cCCCEEEEEEEccc
Confidence 99997 67777777777643
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=128.74 Aligned_cols=82 Identities=22% Similarity=0.179 Sum_probs=71.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+.+..+ + ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT----------G-------QHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS----------C-------SBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC----------C-------cCCcEEEEEECCHHHHHHHHH
Confidence 45689999999999999999999999999999999765321 1 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 76 ~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 76 IMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp HSSSCBCSSCBCEEEETTT
T ss_pred HhCCCeECCeEEEEEECCC
Confidence 9999999888888887654
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.61 E-value=1.1e-15 Score=133.83 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=69.0
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
..+|||+|||.++|+++|+++|++||.|.+|+|+++.. .+||||||+|++.|+|++||+.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------CCCceEEEEECCHHHHHHHHHHc
Confidence 46899999999999999999999999999999976521 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009228 368 NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~ 384 (539)
|+..+.++.|+|.++..
T Consensus 66 ~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp TTCEETTEECEEEESSC
T ss_pred CCCEECCEEEEEEECCC
Confidence 99998888888877654
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=128.49 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=71.1
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|+.+. . + ..+|||||+|++.++|++||
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~ 75 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-A----------G-------KPKGLAYVEYENESQASQAV 75 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-T----------S-------CEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C----------C-------CEEeEEEEEECCHHHHHHHH
Confidence 3567899999999999999999999999999999997653 1 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..++++.|+|.++..
T Consensus 76 ~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 76 MKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp HHHTTEESSSCEEEEEECCC
T ss_pred HHhCCCEECCEEEEEEECCC
Confidence 99999998888888877654
No 24
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=3.4e-15 Score=129.57 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=73.5
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++++++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG-----------------KSKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999998653211 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecCC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~~ 387 (539)
+.||+..++++.|+|.++.....
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCCC
T ss_pred HHhCCCEECCEEEEEEEccCCCC
Confidence 99999998888888888765433
No 25
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=2.1e-15 Score=128.76 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=68.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..|+|+ ++||||+|++.++|++||+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999983 56899999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecCC
Q 009228 367 LNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~~~ 387 (539)
||+..+.++.|+|.++.....
T Consensus 65 l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 65 MNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HTTEEETTEEEEEEECCCCCC
T ss_pred HCCCccCCCEEEEEEcCCCcc
Confidence 999998888888888765443
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=127.54 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=72.7
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCC-CCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLP-QTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p-~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
....++|||+|||.++++++|+++|+.||.|+.|+|+.+ +.+ ...+|||||+|++.++|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~~g~afV~f~~~~~a~~A 74 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT-----------------GAHRGFGFVDFITKQDAKKA 74 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSS-----------------CSSCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCC-----------------CCcCceEEEEECCHHHHHHH
Confidence 346789999999999999999999999999999999754 221 12389999999999999999
Q ss_pred HHHH-cCCCCCCCceEEEEeeecC
Q 009228 364 IAEL-NDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 364 v~~L-N~~~~~~~glrV~l~~~~~ 386 (539)
|+.| |+..+.++.|+|.++....
T Consensus 75 ~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 75 FNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHHhccCCeECCCEEEEEeCCCCC
Confidence 9999 8999888888888876543
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=128.61 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=71.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+.+..++ ..+|||||+|++.++|++||+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTK-----------------APRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSC-----------------SBCSCEEEEESSSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------CCCeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 74 AMDGAELDGRELRVQVARY 92 (103)
T ss_dssp HHSSCCBTTBCCEEEECSS
T ss_pred HcCCCEECCcEEEEEECCc
Confidence 9999999998898888754
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2.5e-15 Score=122.51 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=69.0
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
.+|||+|||.++++++|+++|+.||.|..|+|.++..++ ..+|||||+|++.++|++|++.||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----------------SSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-----------------CccceEEEEECCHHHHHHHHHHhc
Confidence 689999999999999999999999999999997653211 238999999999999999999999
Q ss_pred CCCCCCCceEEEEeee
Q 009228 369 DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~ 384 (539)
+..+.++.|+|.++..
T Consensus 65 g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 65 GQDLNGRPLRINWAAK 80 (83)
T ss_dssp TCEETTEECEEEECCC
T ss_pred CCeeCCcEEEEEecCc
Confidence 9998887788877654
No 29
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=127.36 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=71.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEE-EEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~V-rI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+|||.++++++|+++|+.||.|..| +|+++..++ ..+|||||+|++.++|++||+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG-----------------NSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTC-----------------SCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCC-----------------CcCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999999 997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~ 386 (539)
.||+..+.++.|+|.++....
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp TTTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEEecccC
Confidence 999999888888888765433
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=129.28 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=70.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|+.|+|+.+..++ ..+|||||+|++.++|++||+.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSC-----------------CCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997653211 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009228 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~ 385 (539)
||+..++++.|+|.++...
T Consensus 74 l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2cqb_A 74 MNESELFGRTIRVNLAKPM 92 (102)
T ss_dssp HTTEEETTEEEEEEECCCC
T ss_pred hCCCEECCcEEEEEeCCCC
Confidence 9999988887888776543
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=127.40 Aligned_cols=83 Identities=28% Similarity=0.327 Sum_probs=72.7
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..+.++|||+|||.++|+++|+++|++||.|..|+|+.+ .+ ..+|||||+|++.++|++||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g-----------------~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GG-----------------RSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SS-----------------SEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CC-----------------CcCEEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999754 11 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~ 386 (539)
+.||+..+.++.|+|.++..+.
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 73 TEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHTTCBSSSSBCEEEECSSCC
T ss_pred HHhCCCEeCCcEEEEEEecccc
Confidence 9999999999999999876543
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=129.64 Aligned_cols=82 Identities=27% Similarity=0.311 Sum_probs=71.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|..++.++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTG-----------------QSKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCC-----------------ceeeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..++++.|+|.++..
T Consensus 76 ~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 76 GVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp HTTTCEETTEECEEEESSC
T ss_pred HcCCCeeCCcEEEEEECCC
Confidence 9999998888888887654
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=2.3e-15 Score=126.76 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=69.7
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
+++|||+|||.++++++|+++|++||.|..|+|..+..++ ..+|||||+|++.++|++|++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTG-----------------RSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTC-----------------CBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------ccceEEEEEECCHHHHHHHHHHh
Confidence 5799999999999999999999999999999997653211 23899999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009228 368 NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 N~~~~~~~glrV~l~~~ 384 (539)
|+..+.++.|+|.++..
T Consensus 65 ~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp TTCEETTEECEEEECSC
T ss_pred CCCeECCeEEEEEEcCC
Confidence 99998888888877654
No 34
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=125.34 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=70.2
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
+..++|||+|||.++|+++|+++|+.||.|..|+|..+..+ . ...+|||||+|++.++|++|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~----------~------~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH----------P------HLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE----------E------EEECSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC----------C------CCCCcEEEEEEecHHHHHHHHH
Confidence 35689999999999999999999999999999999654321 0 0138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.++.
T Consensus 66 ~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 66 HMDGGQIDGQEITATAVL 83 (88)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HcCCCeECCeEEEEEECC
Confidence 999999888888888764
No 35
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=1.7e-15 Score=132.76 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=60.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||.|||+++|+++|+++|++||+|+.|.|+. .|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------------------------TSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999999942 16999999999999999999
Q ss_pred HcCCCCCCCceEE
Q 009228 367 LNDEGNWRSGLRV 379 (539)
Q Consensus 367 LN~~~~~~~glrV 379 (539)
||+..+.++.++|
T Consensus 71 l~g~~~~gr~~~~ 83 (115)
T 3beg_B 71 LDNTKFRSHEGET 83 (115)
T ss_dssp HTTCBCCCTTSCC
T ss_pred hCCCEECCcEeee
Confidence 9999887776444
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.60 E-value=1.6e-15 Score=124.26 Aligned_cols=80 Identities=26% Similarity=0.364 Sum_probs=68.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|.++..+ + ..+|||||+|++.++|++|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET----------E-------KHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT----------T-------EECSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC----------C-------ccccEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999654321 1 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|.++
T Consensus 68 ~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 68 NMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEECCcEEEEEEc
Confidence 99999988877777764
No 37
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=129.60 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=70.8
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...+||||+|||.++|+++|+++|+.||.|..|+|+++.. + ..||||||+|++.++|++||
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g-----------------~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K-----------------AFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-T-----------------SCCCEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-C-----------------CCccEEEEEECCHHHHHHHH
Confidence 45678999999999999999999999999999999986532 1 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+ +|+..+.++.|+|.+...
T Consensus 70 ~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 70 E-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp T-SSCCCCTTTTCEEEEHHH
T ss_pred H-cCCCEECCEEEEEEEchH
Confidence 9 899998888898887543
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=9.3e-16 Score=128.07 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=66.4
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG--~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.+|||+||+.++|+++|+++|+.|| .|..|+|.+++.++ ..||||||+|++.++|++|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g-----------------~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-----------------QSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC-----------------CEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC-----------------ccCcEEEEEECCHHHHHHHHHH
Confidence 4899999999999999999999999 99999998764321 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009228 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~ 385 (539)
||+..+.++.|+|......
T Consensus 65 l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp GGGSCSSSCCCEECCC---
T ss_pred cCCCeeCCEEEEEEECCCC
Confidence 9999998888888776543
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.60 E-value=4.5e-15 Score=126.61 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=71.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|+.|+|+.+.+ + ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-----------G-------SSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-----------S-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CcCcEEEEEeCCHHHHHHHHH
Confidence 3578999999999999999999999999999999976531 1 238999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEeeecC
Q 009228 366 ELNDEGNWR---SGLRVRLMLRRG 386 (539)
Q Consensus 366 ~LN~~~~~~---~glrV~l~~~~~ 386 (539)
.||+..+.+ +.|+|.++....
T Consensus 75 ~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 75 ALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHcCCccCCCCCccEEEEECccCc
Confidence 999998777 778888776433
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.60 E-value=1.6e-15 Score=131.89 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=70.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|+.|+|+++..++ ..||||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-----------------LSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC-----------------CcCccEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998753211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.+...
T Consensus 86 ~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp HHTTCEETTEECEEECCCC
T ss_pred HcCCCEECCEEEEEEEcCC
Confidence 9999998887777776643
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.60 E-value=3.3e-15 Score=128.70 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=73.0
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++||
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai 85 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-----------------FSKGYALVEYETHKQALAAK 85 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTS-----------------SBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997653211 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~ 386 (539)
+.||+..++++.|+|.++..+.
T Consensus 86 ~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 86 EALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp HHHTTCEETTEECEEEESEESS
T ss_pred HHcCCCEECCcEEEEEEcccCC
Confidence 9999999888888888876543
No 42
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=1.2e-15 Score=130.29 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=71.2
Q ss_pred cceeEEEecCCC------CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHH
Q 009228 287 QSRIVVAENLPE------DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 287 ~~rTVyV~nLP~------d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~A 360 (539)
.++||||+|||. ++++++|+++|++||.|..|+|.+++.+ + .+||||||+|++.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t----------g-------~~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT----------G-------KTKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT----------T-------EECSEEEEEESSHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC----------C-------ccceEEEEEECCHHHH
Confidence 367999999999 9999999999999999999999765422 1 2389999999999999
Q ss_pred HHHHHHHcCCCCCC-CceEEEEeee
Q 009228 361 EKAIAELNDEGNWR-SGLRVRLMLR 384 (539)
Q Consensus 361 ekAv~~LN~~~~~~-~glrV~l~~~ 384 (539)
++||+.||+..+.+ +.|+|.++..
T Consensus 68 ~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 68 KKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHhCCcccCCCeEEEEEECch
Confidence 99999999999998 8899988753
No 43
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=129.42 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=65.5
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.+++|||+|||+++++++|+++|++||.|+.|+|+.. ||||||||++.++|++||+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998531 78999999999999999999
Q ss_pred HcCCC--CCCCceEEEEeee
Q 009228 367 LNDEG--NWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~--~~~~glrV~l~~~ 384 (539)
|++.. +.++.|+|.+...
T Consensus 71 l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 71 AADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp HHHSCCBSSSSBCEEEECSS
T ss_pred hccCCceECCEEEEEEEccC
Confidence 98654 6677787777654
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1e-15 Score=133.84 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=62.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||+++|+++|+++|+.||+|++|+|+++ ||||||||++.++|++||+.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999632 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEee
Q 009228 367 LND--EGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~--~~~~~~glrV~l~~ 383 (539)
|++ ..+.++.|+|.++.
T Consensus 72 l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 72 YTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp HTTSCCEETTEECCBCCCS
T ss_pred hccCCceECCEEEEEEEcC
Confidence 875 44555555555543
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=130.40 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=64.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCC--eeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~--V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
.-.||||+|||.++|+++|+++|++||. |.+|+|++++.++ .+||||||+|++.++|++||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg-----------------~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ-----------------QNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSS-----------------SCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCC-----------------CCceEeEEEECCHHHHHHHH
Confidence 3459999999999999999999999995 7789987654321 23899999999999999999
Q ss_pred HHHcCCC----CCCCceEEEEe
Q 009228 365 AELNDEG----NWRSGLRVRLM 382 (539)
Q Consensus 365 ~~LN~~~----~~~~glrV~l~ 382 (539)
+.||+.. +.++.|+|.++
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEEC
T ss_pred HHhcCCCCCceECCEEEEEEEc
Confidence 9999864 44555665554
No 46
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=128.69 Aligned_cols=80 Identities=23% Similarity=0.231 Sum_probs=68.9
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|++||.|+.|+|..++ ..+|||||+|++.++|++||
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~ 78 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAV 78 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999995321 13889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..++++.|+|.++..
T Consensus 79 ~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 79 YGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp HHHTTCEETTEECEEECCCC
T ss_pred HHcCCCEECCeEEEEEEccc
Confidence 99999988877777776543
No 47
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.5e-15 Score=133.14 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=68.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.+++|||+|||+++|+++|+++|+.||.|++|+|+.+ ||||||||++.++|++||+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999999632 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEeeecCCC
Q 009228 367 LND--EGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 367 LN~--~~~~~~glrV~l~~~~~~k 388 (539)
|++ ..+.++.|+|.++..+..+
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSSCC
T ss_pred hccCCceECCeEEEEEEccCCCCC
Confidence 984 4677888888887554443
No 48
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=131.37 Aligned_cols=84 Identities=26% Similarity=0.279 Sum_probs=71.8
Q ss_pred hhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
.++...++|||+|||.++++++|+++|+.||.|..|+|+.+..++ ..+|||||+|++.++|++
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-----------------RSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSS-----------------SCCCCEEEEESCGGGHHH
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCC-----------------ccCcEEEEEeCcHHHHHH
Confidence 345678999999999999999999999999999999997654221 238999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009228 363 AIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~~~ 384 (539)
|| .||+..++++.|+|.+...
T Consensus 83 A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 83 AI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HH-HHTTEEETTEEEEEEEHHH
T ss_pred HH-HcCCCEeCCeEEEEEecCC
Confidence 99 8999998887787777643
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=125.76 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=68.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|..+..++ ..+|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR-----------------KSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSC-----------------CCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997653211 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009228 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~glrV~l~ 382 (539)
||+..++++.|+|.++
T Consensus 78 l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 78 INNKQLFGRVIKASIA 93 (94)
T ss_dssp TTTEEETTEEEEEEEC
T ss_pred cCCCeeCCcEEEEEec
Confidence 9999888777777764
No 50
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=129.93 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=63.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..+++|||+|||+++|+++|+++|+.||.|++|+|++ .||||||||++.++|++||+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----------------------KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999953 17899999999999999999
Q ss_pred HHcCCCC--CCCceEEEEe
Q 009228 366 ELNDEGN--WRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~--~~~glrV~l~ 382 (539)
.||+..+ .++.|+|.+.
T Consensus 76 ~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 76 YAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp HHHHSCEEETTEEEEEEEC
T ss_pred HhcCCCceeCCcEEEEEec
Confidence 9998763 3555555554
No 51
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=128.11 Aligned_cols=82 Identities=23% Similarity=0.286 Sum_probs=69.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTE-----------------HSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-----------------CBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CCccEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653221 138999999999999999999
Q ss_pred HHc------CCCCCCCceEEEEeee
Q 009228 366 ELN------DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN------~~~~~~~glrV~l~~~ 384 (539)
.|| +..+.++.|+|.++..
T Consensus 76 ~~~~~~~~~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 76 AASLEAEGGGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp HHCTTTTTCCEESSSCEEEEECCCC
T ss_pred HhccccccCCcEEcCEEEEEEECCC
Confidence 999 8787777777776543
No 52
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=8.7e-15 Score=156.51 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=71.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+||+.++|+++|+++|++||.|+.|.|+.+..++ ..+|||||+|++.++|++||+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kG~aFV~F~~~e~A~~Ai~ 162 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSG-----------------KPRGYAFIEYEHERDMHSAYK 162 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCC-----------------CccceEEEeeccHHHHHHHHH
Confidence 356899999999999999999999999999999997653221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.+..|.|.++..
T Consensus 163 ~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 163 HADGKKIDGRRVLVDVERG 181 (437)
T ss_pred HcCCCEECCEEEEEEEeCC
Confidence 9999998888888877654
No 53
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.2e-15 Score=125.98 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=70.5
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++++++|+++|+.||.|+.|+|+++.. ..||||||+|++.++|++||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999976521 13789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++.|+|.++..
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 73 AAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp HHHTTEEETTEEEEEEECCC
T ss_pred HHhCCCCcCCCeEEEEECCC
Confidence 99999988877777777654
No 54
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-15 Score=125.33 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=70.2
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeE--------EEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~--------VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~ 357 (539)
...++|||+|||.++++++|+++|++||.|.. |+|..++.++ ..||||||+|++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~G~afV~f~~~ 73 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-----------------KLKGEATVSFDDP 73 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC-----------------SEEEEEEEEBSSH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCC-----------------CeeeEEEEEECCH
Confidence 35689999999999999999999999999999 9997654221 2389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEe
Q 009228 358 ELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 358 E~AekAv~~LN~~~~~~~glrV~l~ 382 (539)
++|++|++.||+..+.++.|+|.++
T Consensus 74 ~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 74 PSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEec
Confidence 9999999999999998888888765
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.7e-15 Score=124.92 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=72.4
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|+++.. ..+|||||+|++.++|++||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999976521 13889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecCC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~~ 387 (539)
+.||+..+.++.|+|.++..+..
T Consensus 73 ~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 73 EKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp HHHTTCEETTEECEEEECCSSCC
T ss_pred HHhCCCEECCEEEEEEEcccCCC
Confidence 99999998888888887765433
No 56
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=130.80 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=64.9
Q ss_pred cceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+++|||+|||+ ++|+++|+++|+.||.|++|+|+++ |+||||||++.++|++||+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------------------INEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 9999999999999999999999532 6799999999999999999
Q ss_pred HHcCCC--CCCCceEEEEee
Q 009228 366 ELNDEG--NWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~--~~~~glrV~l~~ 383 (539)
.||+.. +.++.|+|.++.
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp HHHHSCCEETTEECEEEEEC
T ss_pred HHcCCCceECCcEEEEEECC
Confidence 999754 666677777765
No 57
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.5e-15 Score=130.07 Aligned_cols=84 Identities=25% Similarity=0.328 Sum_probs=71.0
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCee--------EEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVK--------TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~--------~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe 355 (539)
++...++|||+|||.++|+++|+++|+.||.|. .|+|+.++.++ ..+|||||+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~g~afV~f~ 73 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG-----------------KPKGDATVSYE 73 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC-----------------SBCSEEEEEBS
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC-----------------CeeeEEEEEEC
Confidence 345678999999999999999999999999999 68887653211 23899999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009228 356 SVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 356 t~E~AekAv~~LN~~~~~~~glrV~l~~~ 384 (539)
+.++|++||+.||+..+.++.|+|.++..
T Consensus 74 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 74 DPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred CHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 99999999999999998887777777654
No 58
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=8.3e-15 Score=121.91 Aligned_cols=75 Identities=23% Similarity=0.233 Sum_probs=68.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|+.|+|. |+||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999983 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009228 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++.|+|.+....
T Consensus 61 ~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 61 NLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp HHTTCBCSSCBCEEECSSCC
T ss_pred HhcCCccCCcEEEEEECCCC
Confidence 99999988888888876543
No 59
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=2.3e-15 Score=124.26 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=68.5
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+.+.++|||+|||.++++++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++|+
T Consensus 3 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG-----------------HPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSS-----------------SCCEEEEEEESSTHHHHHHG
T ss_pred CCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997653221 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009228 365 AELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|...
T Consensus 66 -~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 66 -ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp -GGTTCEETTEECEEEET
T ss_pred -hcCCCEECCcEEEEEEc
Confidence 89999987777777654
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.4e-15 Score=126.79 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=69.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.|| |..|+|+++..+. ...+|||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~----------------g~~~g~afV~f~~~~~a~~A~- 74 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP----------------ERLKGFGYAEFEDLDSLLSAL- 74 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCT----------------TSBCSCEEEEESSHHHHHHHH-
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCC----------------CCcCeEEEEEECCHHHHHHHH-
Confidence 3568999999999999999999999999 9999997653210 123889999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~ 386 (539)
.||+..+.++.|+|.++..+.
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 75 SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp GGGTCEETTEECEEEECCCCC
T ss_pred hcCCCEeCCcEEEEEEccCCC
Confidence 899999888888888765433
No 61
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=125.18 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=68.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|..+.. ...+|||||+|++.++|++||+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~------------------g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE------------------GKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT------------------SCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC------------------CCCceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999976531 1238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
.||+..++++.|+|.++
T Consensus 76 ~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGP 92 (95)
T ss_dssp HHTTCEETTEECEEECC
T ss_pred HhCCCEECCCEEEEEEc
Confidence 99999988777777654
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=125.14 Aligned_cols=80 Identities=21% Similarity=0.167 Sum_probs=68.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 75 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----------------RSRGFAFVYFENVDDAKEAKE 75 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-----------------CcccEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|.++
T Consensus 76 ~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 76 RANGMELDGRRIRVSGP 92 (95)
T ss_dssp HHTTEEETTEEEEEECC
T ss_pred HhCCCEECCEEEEEEec
Confidence 99998887776766654
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.4e-15 Score=126.39 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=70.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|+.|+|+++.+ ...+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~------------------g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD------------------GKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT------------------CSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC------------------CCeeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999976531 12389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.+...
T Consensus 76 l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 76 FNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HTTCEETTEECEEEECSC
T ss_pred hCCCEeCCCEEEEEEccc
Confidence 999998888888887654
No 64
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=4e-15 Score=133.41 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=71.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||+|..|+|++++.++ ..+|||||+|++.++|++||+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~~G~afV~F~~~~~A~~Ai~ 106 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----------------RSRGFAFVYFENVDDAKEAKE 106 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSS-----------------CCCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 107 ~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 107 RANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp HHTTCCSSSSCCEESCCSS
T ss_pred HhCCCEECCEEEEEEEecC
Confidence 9999998888888776643
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.58 E-value=2.5e-15 Score=131.03 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=70.0
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++++++|+++|++||+|..|+|++++.++ ..+|||||+|++.++|++||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTS-----------------LSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSS-----------------CCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------CcCcEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997653221 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009228 365 AELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~ 382 (539)
+.||+..++++.|+|.+.
T Consensus 100 ~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 100 KAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHCCCCEETTEECCEEEC
T ss_pred HHcCCCEECCEEEEEEec
Confidence 999999888877777764
No 66
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.8e-15 Score=127.01 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=65.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||+|+.|+|+. .|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999953 16999999999999999999
Q ss_pred HcCCCCCC-----CceEEEEeee
Q 009228 367 LNDEGNWR-----SGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~-----~glrV~l~~~ 384 (539)
||+..+.+ +.|+|.++..
T Consensus 70 l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 70 LDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SSSEEEECTTSCEEEEEEEESSC
T ss_pred HCcCCccCCcCcceEEEEEeCCC
Confidence 99988777 5666666654
No 67
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=126.10 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=69.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCee-EEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVK-TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~-~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
...++|||+|||.++++++|+++|++||.|. .|+|++++.++ ..+|||||+|++.++|++|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTG-----------------IPAGYCFVEFADLATAEKCL 69 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSC-----------------CEEEEEEEECSCHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCC-----------------CcCCEEEEEeCCHHHHHHHH
Confidence 3568999999999999999999999999999 99998764221 23899999999999999999
Q ss_pred HHHcCCCCCCCc----eEEEEee
Q 009228 365 AELNDEGNWRSG----LRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~g----lrV~l~~ 383 (539)
+.||+..+.++. |+|.++.
T Consensus 70 ~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 70 HKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp HTTTTSEESSCSSCEECCEEETT
T ss_pred HHHcCCccCCCCcceeEEEeecC
Confidence 999999888887 6666653
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=127.97 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=71.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETG-----------------RSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTT-----------------EEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653211 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 87 ~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 87 QLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp HHTTCCSSSSCCEEECSCS
T ss_pred HcCCCEECCEEEEEEEccc
Confidence 9999999998888887653
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=127.24 Aligned_cols=82 Identities=30% Similarity=0.368 Sum_probs=71.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++ .++|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-----------------KPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTT-----------------EEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 69 ~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 69 NLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSSSBSCSSSCBEEEETTC
T ss_pred HhCCCeeCCcEEEEEeCCC
Confidence 9999999888888887654
No 70
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-15 Score=126.84 Aligned_cols=84 Identities=26% Similarity=0.317 Sum_probs=69.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|+.|+|..+.... + ....+|||||+|++.++|++||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------g-----t~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKA---------G-----VLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTT---------C-----CEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC---------C-----CcCcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653200 0 002389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.+...
T Consensus 70 l~g~~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISER 87 (98)
T ss_dssp STTCEETTEECEEECSSC
T ss_pred hCCCeeCCeEEEEEEccC
Confidence 999988877777776643
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.7e-15 Score=127.66 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=65.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
.+++|||+|||+++|+++|+++|+.||.|+.|+|+.+ ||||||||++.++|++||+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998532 78999999999999999998
Q ss_pred HcC--CCCCCCceEEEEeeecC
Q 009228 367 LND--EGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 367 LN~--~~~~~~glrV~l~~~~~ 386 (539)
|++ ..+.++.|+|.++..+.
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHSCCEETTEECEEEECSCSS
T ss_pred hccCCceECCcEEEEEEcCccc
Confidence 864 44666677777765433
No 72
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=9.3e-15 Score=123.25 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=67.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|+.|+|.. .||||||+|++.++|++|++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999999999842 17799999999999999999
Q ss_pred HHcCCCCC--CCceEEEEeee
Q 009228 366 ELNDEGNW--RSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~--~~glrV~l~~~ 384 (539)
.||+..+. ++.|+|.++..
T Consensus 72 ~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 72 KMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp HHTTCBCSSSSCBCEEEECCC
T ss_pred HHCCCEeCCCCcEEEEEECCC
Confidence 99999988 77788887654
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=6.4e-15 Score=126.07 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=69.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|+.|+|+++. + + ..+|||||+|++.++|++||+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-S----------G-------RSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-T----------S-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998653 1 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009228 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|.++
T Consensus 89 ~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp HHTTCEETTEECEEEEE
T ss_pred HhCCCEeCCcEEEEEEe
Confidence 99999988888888775
No 74
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=122.57 Aligned_cols=75 Identities=25% Similarity=0.233 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+ ++||||+|++.++|++||+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999993 4589999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009228 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++.|+|.++...
T Consensus 62 ~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 62 QLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHTTCEETTEECEEEESCCC
T ss_pred HhCCCEECCcEEEEEECCCC
Confidence 99999988888888887543
No 75
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.3e-15 Score=124.59 Aligned_cols=79 Identities=20% Similarity=0.211 Sum_probs=69.2
Q ss_pred cceeEEEecCCCCCCHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
..++|||+|||.++++++|+ ++|++||+|+.|+|..++. . ||||||+|++.++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~------------------~--rg~afV~f~~~~~A~~ 67 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD------------------Y--QLKAVVQMENLQDAIG 67 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS------------------T--TCCEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC------------------C--CeEEEEEECCHHHHHH
Confidence 45799999999999999999 9999999999999975421 1 6799999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeec
Q 009228 363 AIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~~~~ 385 (539)
||+.||+..+.++.|+|.++...
T Consensus 68 Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 68 AVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHHhCCCEECCeEEEEEEcCCC
Confidence 99999999988888888877543
No 76
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.1e-15 Score=124.09 Aligned_cols=77 Identities=27% Similarity=0.318 Sum_probs=69.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|.++ ||||||+|++.++|++|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----------------------kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----------------------KGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999532 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009228 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++.|+|.++...
T Consensus 70 ~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 70 ELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHTTCCBTTBCCEEEESSCC
T ss_pred HhCCCEeCCceEEEEEcCCC
Confidence 99999999988998887543
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.57 E-value=8.8e-15 Score=121.68 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=69.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|+.|+|+++. + ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~------------g-------~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN------------G-------KSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS------------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC------------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997531 0 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.+...
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 68 MNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp HTTCCBTTBCCCCEECSC
T ss_pred hCCCEECCcEEEEEEcCC
Confidence 999998888888887654
No 78
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.9e-15 Score=124.84 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=70.2
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhh-cCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~-fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
...++|||+|||.++|+++|+++|+. ||.|..|+|+++. + + ..+|||||+|++.++|++||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-T----------G-------VSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-T----------C-------CEEEEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-C----------C-------CccceEEEEECCHHHHHHHH
Confidence 35689999999999999999999999 9999999998653 1 1 13899999999999999999
Q ss_pred HHHcCCC-CCCCceEEEEeee
Q 009228 365 AELNDEG-NWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~-~~~~glrV~l~~~ 384 (539)
+.||+.. +.++.|+|.++..
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCC
T ss_pred HHccCCcccCCEeEEEEEccC
Confidence 9999988 8888887777643
No 79
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.1e-14 Score=122.90 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=68.6
Q ss_pred ccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
...++|||+|||. ++++++|+++|++||.|..|+|. ||||||+|++.++|++||
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 4578999999998 99999999999999999999982 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009228 365 AELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~ 385 (539)
+.||+..+.++.|+|.++...
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECC
T ss_pred HHcCCCeeCCcEEEEEEcCcC
Confidence 999999999999999988653
No 80
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=126.90 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=69.1
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|.. .++||||+|++.++|++||+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHH
Confidence 3568999999999999999999999999999999842 27899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 65 ~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 65 HLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HHTTCBSSSSBCEEEEEET
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999999999999998764
No 81
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.5e-15 Score=130.10 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=66.0
Q ss_pred cceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+++|||+|||++ +|+++|+++|+.||+|.+|+|.+ .||||||||++.++|++||+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4789999999998 99999999999999999999953 27899999999999999999
Q ss_pred HHcCC--CCCCCceEEEEeee
Q 009228 366 ELNDE--GNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~--~~~~~glrV~l~~~ 384 (539)
.||+. .+.++.|+|.++.+
T Consensus 81 ~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 81 HCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp HHHHSCCCSSSSCCEEEEECS
T ss_pred HhccCCceECCEEEEEEECcc
Confidence 99754 46777888888754
No 82
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=121.66 Aligned_cols=75 Identities=25% Similarity=0.209 Sum_probs=67.2
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|++||.|..|+|. ++||||+|++.++|++|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999993 458999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++.|+|.++..
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp HHHTTEEETTEEEEEEESSC
T ss_pred HHhCCCeeCCcEEEEEEccC
Confidence 99999998887777777643
No 83
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=5.2e-15 Score=118.92 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=66.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
++|||+|||.++++++|+++|++||.|..|+|..+..++ .++|||||+|++.++|++|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-----------------RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSS-----------------SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCC-----------------CcCceEEEEEcCHHHHHHHHHhCC
Confidence 589999999999999999999999999999997653211 238999999999999999999998
Q ss_pred CCCCCCCceEEEEe
Q 009228 369 DEGNWRSGLRVRLM 382 (539)
Q Consensus 369 ~~~~~~~glrV~l~ 382 (539)
..+.++.|+|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 8888888888764
No 84
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7e-15 Score=126.76 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=68.6
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++++++|+++|+.||.|..|+|+.+ +|||||+|++.++|++||
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAI 78 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHH
Confidence 446789999999999999999999999999999999642 789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..++++.|+|.++..
T Consensus 79 ~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 79 VSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp HHHTTCEETTEECEEECCCC
T ss_pred HHcCCCEECCcEEEEEecCC
Confidence 99999988887777777644
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.8e-15 Score=127.52 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=70.9
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+||+.++|+++|+++|++||+|+.|+|+++.. ..||||||+|++.++|++|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------------------BCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------------------CCceEEEEEECCHHHHHHHH
Confidence 44678999999999999999999999999999999975421 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..++++.|+|.++..
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp HHHTTCEETTEECEEEECCC
T ss_pred HHcCCCEECCEEEEEEECCC
Confidence 99999998888888877643
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.2e-14 Score=123.84 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=68.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.|| |..|+|+++..++ ..+|||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~- 73 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTD-----------------KFKGFCYVEFDEVDSLKEAL- 73 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHG-
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCC-----------------ccceEEEEEECCHHHHHHHH-
Confidence 3568999999999999999999999997 9999998764221 23899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 74 TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp GGTTCEETTEECEEEECCC
T ss_pred hhCCCeECCeEEEEEEecC
Confidence 7999988887788777654
No 87
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=8.8e-15 Score=126.97 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=66.2
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|+++..++ ..||||||+|++.++|++||
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg-----------------~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-----------------RSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTC-----------------CCTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCC-----------------CcCcEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997653221 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009228 365 AELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~ 385 (539)
+.++ ..+.++.|+|.++..+
T Consensus 85 ~~~~-~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 85 AQSR-HELDSKTIDPKVAFPR 104 (109)
T ss_dssp HSSC-EEETTEEEEEEECCCC
T ss_pred HHCC-CcCCCEEEEEEEccCC
Confidence 9764 6666667777776543
No 88
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=122.58 Aligned_cols=77 Identities=26% Similarity=0.309 Sum_probs=67.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|. ++|+.. ..+|||||+|++.++|++||+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999997 666432 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 75 ~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 75 CLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HHTTCCSSSSCCEEEECCC
T ss_pred HhCCCEECCcEEEEEEcCC
Confidence 9999999999999988754
No 89
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=4.7e-15 Score=128.78 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=71.5
Q ss_pred hccceeEEEecCCCCCCHHHHH---HHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~---e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
.++.++|||+|||.++++++|+ ++|++||+|..|+|..+..++. + ...+|||||+|++.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~-------~-------~~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG-------S-------QGPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS-------S-------SCCCEEEEEEESSHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc-------c-------CCCCeEEEEEECcHHHHH
Confidence 3457899999999999999999 9999999999999976543211 1 123799999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009228 362 KAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 362 kAv~~LN~~~~~~~glrV~l~~~ 384 (539)
+||+.||+..++++.|+|.++..
T Consensus 78 ~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 78 RAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp HHHHHHTTEEETTEEEEEESCCC
T ss_pred HHHHHhCCCEECCEEEEEEeccc
Confidence 99999999998887777776654
No 90
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=121.71 Aligned_cols=76 Identities=28% Similarity=0.250 Sum_probs=68.6
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
++|||+|||.++|+++|+++|++||+|+.|+|..+ .+|||||+|++.++|++|++.||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 48999999999999999999999999999999642 27899999999999999999999
Q ss_pred CCCCCCCceEEEEeeecC
Q 009228 369 DEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~~~ 386 (539)
+..++++.|+|.++....
T Consensus 59 g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMP 76 (101)
T ss_dssp HSCSSSCCCEEEESSSCC
T ss_pred CCeECCcEEEEEEccCCC
Confidence 999999899998876533
No 91
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=6.8e-15 Score=124.96 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=67.5
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
+..|||+||++.+|+++|+++|.+||+|+++.|.. +||||||||.+.++|++|++.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 56899999999999999999999999999999953 2899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
|+..+.++.|+|.++.
T Consensus 64 n~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 64 NNCVLANTTIFAESPS 79 (89)
T ss_dssp TTEEETTEEEEEECCC
T ss_pred cCCEECCcEEEEEECC
Confidence 9999999999988773
No 92
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=8e-15 Score=120.90 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=65.1
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...++|||+|||.++++++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG-----------------RSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-----------------ccccEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999998654221 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEE
Q 009228 365 AELNDEGNWRSGLRVRL 381 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l 381 (539)
+ +++..++++.|+|..
T Consensus 71 ~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 71 D-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp H-SSCEEETTEEEEEEE
T ss_pred H-hCCCEECCEEEEEEe
Confidence 7 566666666566554
No 93
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.55 E-value=9.4e-15 Score=128.40 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=70.6
Q ss_pred hhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
..+...++|||+|||.++|+++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSG-----------------HPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTS-----------------SCEEEEEEEESSHHHHHH
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcccEEEEEECCHHHHHH
Confidence 345568999999999999999999999999999999998653221 238999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009228 363 AIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~~ 383 (539)
|| .||+..+.++.|+|.+..
T Consensus 94 A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 94 AV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HH-TTTTCEETTEECEEEESS
T ss_pred HH-hcCCCeECCeEEEEEECC
Confidence 99 799999887777777654
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=8.1e-15 Score=135.86 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=70.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC--CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG--~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..++|||+||++++|+++|+++|+.|| .|..|+|+.++.++ ..||||||+|++.++|++||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg-----------------~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANG-----------------QSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999 99999998764322 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++.|+|.++..
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 99999998888888887754
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.55 E-value=2.2e-14 Score=126.39 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=71.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+||+.++++++|+++|++||+|+.|+|+++. + + ..+|||||+|++.++|++||+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S----------G-------RSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-S----------S-------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-C----------C-------CEeeEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997653 1 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009228 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++.|+|.++...
T Consensus 95 ~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 95 QYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHTTEESSSCEEEEEEECCT
T ss_pred HcCCCEECCcEEEEEEeCCC
Confidence 99999988888888887643
No 96
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.6e-15 Score=127.40 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=68.1
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
+....++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ ..+|||||+|++.++|++|
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A 85 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK-----------------RSRGFGFVTFSSMAEVDAA 85 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTS-----------------SCCSEEEEECSSHHHHHHH
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCC-----------------CcCceEEEEeCCHHHHHHH
Confidence 34567899999999999999999999999999999998753221 2389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009228 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~ 383 (539)
|+. ++..+.++.|+|.++.
T Consensus 86 i~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 86 MAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HTS-CSEEETTEEEEEECCS
T ss_pred HHh-CCcEECCEEEEEEECC
Confidence 997 8777766666666554
No 97
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=124.05 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=69.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCC-eeEEEEe-CCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~-V~~VrI~-~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
...++|||+|||.++|+++|+++|++||. |..|+|. .+..++ ..||||||+|++.++|++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g-----------------~~~g~afV~f~~~~~A~~A 68 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM-----------------KNRGFAFVEYESHRAAAMA 68 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTT-----------------TTCCEEEEEESSHHHHHHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCC-----------------CcCcEEEEEecCHHHHHHH
Confidence 35689999999999999999999999998 9999986 332211 2389999999999999999
Q ss_pred HHHHc--CCCCCCCceEEEEeee
Q 009228 364 IAELN--DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 364 v~~LN--~~~~~~~glrV~l~~~ 384 (539)
++.|+ +..++++.|+|.++..
T Consensus 69 ~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 69 RRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp HTTTTTCCSCBTTBCCEEEESCS
T ss_pred HHHhhCCCceecCCeEEEEEcCC
Confidence 99996 5788888888888754
No 98
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=124.52 Aligned_cols=81 Identities=22% Similarity=0.200 Sum_probs=69.5
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...++|||+|||.++|+++|+++|+.||.|..|+|+.+. + + ..+|||||+|++.++|++||
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~ 83 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-S----------G-------TSRGVGFARMESTEKCEAVI 83 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-S----------S-------CEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997653 1 1 13899999999999999999
Q ss_pred HHHcCCCC--------CCCceEEEEee
Q 009228 365 AELNDEGN--------WRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~--------~~~glrV~l~~ 383 (539)
+.||+..+ +.+.|+|.++.
T Consensus 84 ~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 84 GHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHhCCCEEcCCccccCCCCceeEEccC
Confidence 99999887 56667777764
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=3.6e-14 Score=129.53 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=71.4
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++||+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-----------------ESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCT-----------------TSCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 131 ~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp HSTTEESSSSEEEEEEECC
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999998888888887754
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=5.4e-15 Score=122.68 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=68.2
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
++|||+|||.++++++|+++|+.||.|..|+|.++..++ ..+|||||+|++.+ |++|++.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETK-----------------KPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSC-----------------CCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCC-----------------CcceEEEEEECCHH-HHHHHHHhC
Confidence 689999999999999999999999999999997653221 23899999999999 999999999
Q ss_pred CCCCCCCceEEEEeeecC
Q 009228 369 DEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~~~ 386 (539)
+..+.++.|+|.++....
T Consensus 64 g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp SSCCSSSSCSEEEC----
T ss_pred CCEECCeEEEEEEcCCCC
Confidence 999999999998876543
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.2e-15 Score=121.06 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=61.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|..+..++ ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-----------------KCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSC-----------------SCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998753221 2389999999999999999999
Q ss_pred HcCCCCCC
Q 009228 367 LNDEGNWR 374 (539)
Q Consensus 367 LN~~~~~~ 374 (539)
||+..+.+
T Consensus 67 l~g~~~~g 74 (85)
T 1x4e_A 67 LKASGVQA 74 (85)
T ss_dssp HHHHTCCE
T ss_pred hcCCeEee
Confidence 99877443
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=9.5e-15 Score=119.74 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=65.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|.+ .||||||+|++.++|++|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4568999999999999999999999999999999953 27899999999999999999
Q ss_pred HH-cCCCCCCCceEEEEe
Q 009228 366 EL-NDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~L-N~~~~~~~glrV~l~ 382 (539)
.| ++..+.++.|+|.++
T Consensus 67 ~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTTTCEETTEECCEEEC
T ss_pred HhcCCeeECCCEEEEEec
Confidence 98 888877777777654
No 103
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.54 E-value=7.7e-15 Score=119.96 Aligned_cols=73 Identities=23% Similarity=0.265 Sum_probs=62.6
Q ss_pred ceeEEEecCCCCC------CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 288 SRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 288 ~rTVyV~nLP~d~------t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
+++|||+|||.++ |+++|+++|++||.|..|+|.+. + + ..||||||+|++.++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~--~----------g-------~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE--D----------G-------KTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB--T----------T-------BCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC--C----------C-------cEeEEEEEEECCHHHHH
Confidence 4799999999999 77999999999999999998521 1 1 23899999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEE
Q 009228 362 KAIAELNDEGNWRS-GLRV 379 (539)
Q Consensus 362 kAv~~LN~~~~~~~-glrV 379 (539)
+|++.||+..+.++ .|+|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 99999999998877 6654
No 104
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=5.5e-15 Score=124.53 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=68.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|..+.++.+..+ ...+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~-----------------g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK-----------------GMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS-----------------SCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCC-----------------CCeeeEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999987777654221 12389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.++.|+|.+..
T Consensus 77 l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp TTTCEETTEECEEEESS
T ss_pred hCCCeeCCeEEEEEEcC
Confidence 99999888888888764
No 105
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.54 E-value=1.2e-14 Score=131.05 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=72.5
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|+.|+|+.+..++ ..+|||||+|++.++|++||
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g-----------------~~~G~afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-----------------ESRGFAFVRFHDKRDAEDAM 106 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSS-----------------SCCSCCEEECSCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997653211 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..++++.|+|.+...
T Consensus 107 ~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 107 DAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp TTTTTCCSSSSCCEEEECCC
T ss_pred HHcCCCEECCEEEEEEECCC
Confidence 99999999999999988754
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=5.6e-15 Score=123.59 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=66.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..++|+.+... ...+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~-----------------g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK-----------------GMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTT-----------------SCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCC-----------------CCEeeEEEEEECCHHHHHHHHHH
Confidence 3589999999999999999999999999998887654321 12389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009228 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~glrV~l~ 382 (539)
||+..+.++.|+|.+.
T Consensus 77 l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGP 92 (95)
T ss_dssp HTTCEETTEECEEECC
T ss_pred hCCCeECCcEEEEEec
Confidence 9999888777777654
No 107
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=1.3e-14 Score=116.43 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=64.1
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
+|||+|||.++++++|+++|++||.|..|+|..+..+ + .++|||||+|++.++|++|++ ||+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT----------N-------RHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSS----------T-------TSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC----------C-------CcCcEEEEEECCHHHHHHHHH-CCC
Confidence 5899999999999999999999999999999665321 1 238999999999999999998 999
Q ss_pred CCCCCCceEEEE
Q 009228 370 EGNWRSGLRVRL 381 (539)
Q Consensus 370 ~~~~~~glrV~l 381 (539)
..+.++.|+|..
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 2mss_A 63 HEINNKMVECKK 74 (75)
T ss_dssp CCSSSCCCEEEC
T ss_pred CEECCEEEEEEe
Confidence 998888887764
No 108
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=9.6e-15 Score=137.94 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=72.9
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+||+.++|+++|+++|+.||.|+.|+|+.+..++ ..+|||||+|++.++|++|+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~A~ 184 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTG-----------------KHKGYGFIEYEKAQSSQDAV 184 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHH
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCC-----------------CcCceEEEEecCHHHHHHHH
Confidence 3456899999999999999999999999999999998653211 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009228 365 AELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~ 385 (539)
+.||+..+.++.|+|.++...
T Consensus 185 ~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 185 SSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHTTCBCSSSBCEEEECSSC
T ss_pred HHccCCEeCCcEEEEEEecCC
Confidence 999999998888888887544
No 109
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=123.86 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=67.0
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+||+.++++++|+++|+.|| |..|+|.++... .+ ..+|||||+|++.++|++||
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~---------~g-------~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN---------PE-------RLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTT---------TC-------CCCSCEEEEECCHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCc---------CC-------ccCeEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999 999999765310 11 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 79 -~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 79 -SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp -HTTTCCBTTBCCCCEECCC
T ss_pred -hcCCCEECCeEEEEEeccC
Confidence 8999998888888877643
No 110
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.1e-14 Score=128.26 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=70.8
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++|+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----------------SSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHH
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC-----------------CcceEEEEEeCCHHHHHHHH
Confidence 3457899999999999999999999999999999998653211 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009228 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.++.
T Consensus 147 ~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 147 DSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHTTCEETTEECEEEESC
T ss_pred HHhCCCccCCcEEEEEecC
Confidence 9999999888888887753
No 111
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=8.7e-15 Score=130.68 Aligned_cols=82 Identities=12% Similarity=0.171 Sum_probs=70.2
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeE--EEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~--VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
+...++|||+|||+++|+++|+++|++||.|+. |+|++++.++ ..||||||+|++. +|++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg-----------------~~rG~aFV~f~~~-~a~~ 81 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQ-----------------LNRGFAFIQLSTI-EAAQ 81 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSS-----------------SBCSCEEEECCHH-HHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCC-----------------CcceEEEEEECCH-HHHH
Confidence 345789999999999999999999999999977 9997764321 2389999999999 9999
Q ss_pred HHHHHcCC----CCCCCceEEEEeee
Q 009228 363 AIAELNDE----GNWRSGLRVRLMLR 384 (539)
Q Consensus 363 Av~~LN~~----~~~~~glrV~l~~~ 384 (539)
||+.||+. .+.++.|+|.++..
T Consensus 82 Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 82 LLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp HHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred HHHHhcCCCCCccCCCEEEEEEECCC
Confidence 99999998 88888888887643
No 112
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=1.3e-14 Score=126.01 Aligned_cols=76 Identities=29% Similarity=0.358 Sum_probs=67.3
Q ss_pred hhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
.+...++|||+|||.++|+++|+++|++||.|+.|+|+ +|||||+|++.++|++|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~A 81 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKA 81 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHH
Confidence 45677999999999999999999999999999999983 67999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009228 364 IAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~ 384 (539)
++.||+..+.++.|+|.++..
T Consensus 82 i~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 82 IEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHTTCEETTEECEEESCSC
T ss_pred HHHcCCCEECCeEEEEEEecC
Confidence 999999998777777766543
No 113
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.4e-14 Score=132.71 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=72.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|.|+.+..++ ..+|||||+|++.++|++||+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-----------------FSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCC-----------------cEeeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999998653221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCCC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~~k 388 (539)
.||+..++++.|+|.++.....+
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHTTCEETTEECEEEESEECC--
T ss_pred HhCCCEECCEEEEEEEecCCCCC
Confidence 99999998888888887654443
No 114
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=9.9e-15 Score=123.79 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=64.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|.. .||||||+|++.++|++|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999952 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009228 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~glrV~l~ 382 (539)
||+..+.++.|+|.++
T Consensus 83 l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 83 LANFPFQGRNLRTGWG 98 (101)
T ss_dssp HTTCEETTEECCCCBC
T ss_pred hCCCeECCeEEEEEec
Confidence 9998877665655543
No 115
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=1.2e-14 Score=127.90 Aligned_cols=76 Identities=18% Similarity=0.112 Sum_probs=66.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+|||+++|+++|+++|++|| +|..|+|... ..+|||||+|++.|+|++||+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------------------~~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------------------DFDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------------------SSSCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------------------CCCCEEEEEECCHHHHHHHHH
Confidence 457999999999999999999999999 9999998421 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.+..
T Consensus 86 ~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 86 RLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HTTTEEETTEEEEEEESC
T ss_pred HcCCCEECCeEEEEEECC
Confidence 999999888877777764
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=120.90 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=65.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCC-eeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~-V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+|||.++|+++|+++|++||. |..+.|+ .+|||||+|++.++|++||+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999999 6666652 27899999999999999999
Q ss_pred HHcC-CCCCCCceEEEEeeec
Q 009228 366 ELND-EGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~-~~~~~~glrV~l~~~~ 385 (539)
.||+ ..++++.|+|.++..+
T Consensus 63 ~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 63 TLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp HHTTTCEETTEECEEEECCCC
T ss_pred HccCCeeECCEEEEEEEccCc
Confidence 9999 8888888888876543
No 117
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=128.85 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|.+++.++ ..+|||||+|++.++|++||+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTC-----------------CCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEE
Q 009228 366 ELNDEGNWRSGLRVRL 381 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l 381 (539)
.||+..+.++.|+|.+
T Consensus 124 ~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 124 NMNESELFGRTIRVNL 139 (140)
T ss_dssp HSTEEEETTEEEEEEC
T ss_pred HhCCCEECCEEEEEEe
Confidence 9999888777777654
No 118
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=4.7e-14 Score=122.36 Aligned_cols=78 Identities=24% Similarity=0.285 Sum_probs=69.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|..|+|.++. ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--------------------ETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--------------------TTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997532 1278999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.++..
T Consensus 67 l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HTTCBSSSCBCEEEECCH
T ss_pred cCCCEECCeEEEEEEecC
Confidence 999999888888888753
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.8e-15 Score=125.68 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=66.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||+|..|+|++++.++ ..+|||||+|++.++|++||+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN-----------------QSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-----------------CEEEEEEEEESSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999998753221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
. |+..+.++.|+|.++.
T Consensus 77 ~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 77 S-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp H-CSEEETTEEEBCCCSC
T ss_pred h-CCCeECCEEEEEEEcc
Confidence 8 8877766655555443
No 120
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=3.1e-14 Score=121.00 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=66.6
Q ss_pred hccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 285 ELQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 285 ~~~~rTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
....++|||+||+. ++++++|+++|+.||.|..|+|. +|||||+|++.++|++|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHH
Confidence 34578999999998 99999999999999999999981 77999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009228 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~ 383 (539)
++.||+..+.++.|+|.++.
T Consensus 74 i~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 74 IEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp HHHHTTSEETTEECEEEECC
T ss_pred HHHcCCCEECCEEEEEEecC
Confidence 99999998887777777654
No 121
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=2.5e-14 Score=137.21 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=83.6
Q ss_pred CHHHHHHhhhcCCceEEeecccccccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCC
Q 009228 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (539)
Q Consensus 249 d~~~V~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~ 328 (539)
+.+.+..||+......+ .|+.++...............++|||+||+.++|+++|+++|++||.|+.|+|+++..
T Consensus 66 ~~~~A~~Ai~~~~~~~~--~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--- 140 (213)
T 4f02_A 66 QPADAERALDTMNFDVI--KGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--- 140 (213)
T ss_dssp SHHHHHHHHHHHTTCEE--TTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT---
T ss_pred CHHHHHHHHHHhhhhhc--CCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC---
Confidence 34455555554333222 2333333222222223344567999999999999999999999999999999976521
Q ss_pred CCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009228 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 329 ~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~~~ 384 (539)
..||||||+|++.|+|++||+.||+..+.++.|+|.++..
T Consensus 141 ----------------~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 141 ----------------GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp ----------------EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ----------------CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 1389999999999999999999999998888888877654
No 122
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.9e-14 Score=122.70 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=66.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||+++|+++|+++|+.||. ..|+|+++++ + ..||||||+|++.|+|++||+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~-----------g-------~~~G~afV~F~~~~~a~~Al~ 73 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPD-----------G-------RVTGEADVEFATHEDAVAAMA 73 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSS-----------S-------CEEEEEEEECSSSHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCC-----------C-------CEeeEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999995 4999976531 1 238999999999999999995
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
+|+..+.++-|+|.+...
T Consensus 74 -~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 74 -KDKANMQHRYVELFLNST 91 (102)
T ss_dssp -TSSCCSSSSCCEEEEECC
T ss_pred -hCCCeECCcEEEEEECCC
Confidence 799888888888776543
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=7.2e-15 Score=124.66 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=67.1
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|.. .++.+. .. ...||||||+|++.++|++||
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~----------~~-------g~~~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV----------RT-------GTNRKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE----------EE-------ETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC----------CC-------CCcCcEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999888 443321 11 124899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+ ||+..+.++.|+|.++..
T Consensus 76 ~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 76 E-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp H-GGGCCBTTBCCEEECCSC
T ss_pred h-cCCcEECCcEEEEEEcCC
Confidence 9 999998888888887654
No 124
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.5e-14 Score=121.83 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=67.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeE-EEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~-VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
...++|||+|||+++|+++|+++|+.||.|.. |+|+++. .+ ..+|||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-----------~g-------~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-----------QG-------RSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-----------SS-------CBCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-----------CC-------CcceEEEEEECCHHHHHHHH
Confidence 35689999999999999999999999999987 8886541 11 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009228 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~ 383 (539)
+. |+..+.++-|+|....
T Consensus 75 ~~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 75 KK-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp TT-TTCCSSSSCCEEEEEC
T ss_pred Hh-CcchhCCcEEEEEECC
Confidence 97 8888888878877654
No 125
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.7e-14 Score=120.68 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=63.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|+.|+|+++..++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG-----------------HSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CccceEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998753221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
. +..+.++.|+|.+..
T Consensus 76 ~--~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 76 Q--RHMIDGRWCDCKLPN 91 (103)
T ss_dssp S--CEEETTEEEEEECCC
T ss_pred c--CCeeCCeEEEEEecC
Confidence 4 344555556665554
No 126
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.4e-14 Score=119.51 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=65.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhc--CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~f--G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
...++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|++.++|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------------------~g~afV~f~~~~~A~~A 67 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------------------RDYAFVHFSNREDAVEA 67 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------------------SSEEEEEESSHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------------------CCeEEEEeCCHHHHHHH
Confidence 356899999999999999999999999 999999872 67999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009228 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~ 383 (539)
|+.||+..+.++.|+|.++.
T Consensus 68 ~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 68 MKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp HHHHSSEEETTEEEEEECCC
T ss_pred HHHhCCCEeCCcEEEEEECC
Confidence 99999998877777776654
No 127
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5e-14 Score=121.97 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCe----eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V----~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
...++|||+|||.++|+++|+++|+.||.| ..+++.. ...+|||||+|++.++|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---------------------g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT---------------------GRMRGQAFITFPNKEIAW 81 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC---------------------SSSCSEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC---------------------CccceEEEEEECCHHHHH
Confidence 356899999999999999999999999999 4555431 123899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeecC
Q 009228 362 KAIAELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 362 kAv~~LN~~~~~~~glrV~l~~~~~ 386 (539)
+||+.||+..+.++.|+|.++....
T Consensus 82 ~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 82 QALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred HHHHHhCCCEeCCcEEEEEEccCCC
Confidence 9999999999988889988876543
No 128
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=6.1e-14 Score=127.67 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=68.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|.++.+ ..++|||||+|++.++|++|++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~------------------g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD------------------GLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT------------------SCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC------------------CCEEEEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999999999999976521 1238999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEe
Q 009228 366 ELNDEGNWR---SGLRVRLM 382 (539)
Q Consensus 366 ~LN~~~~~~---~glrV~l~ 382 (539)
.||+..++. +.|+|.++
T Consensus 155 ~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEEC
T ss_pred HhcCCcccCCCCCCeEEEec
Confidence 999987764 67777764
No 129
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.50 E-value=1.4e-13 Score=125.20 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=70.2
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|..+ .+|||||+|++.++|++||
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999532 2789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+.||+..++++.|+|.+...
T Consensus 128 ~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 128 RELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHSSSCSSSSCCEEEECCC
T ss_pred HHcCCCEECCeEEEEEEcCC
Confidence 99999999999999887643
No 130
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=118.19 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.| .|..|+|+++. . + ..+|||||+|++.++|++||+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA-H----------G-------NKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT-T----------S-------CEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC-C----------C-------CCceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999 99999997651 1 1 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.++..
T Consensus 69 -~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 69 -CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp -SCSEEETTEEEEEEEESS
T ss_pred -hCCceeCCcEEEEEECCc
Confidence 999998887777776643
No 131
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=5.5e-14 Score=130.78 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=68.0
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ .++|||||+|++.++|++||+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG-----------------KKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC-----------------CccceEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999998753211 238999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeeecCC
Q 009228 366 ELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~~~ 387 (539)
. ++..+.++.|+|.++..+..
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp C-SCCEETTEECEEEECC----
T ss_pred h-CCcEECCEEEEEEecCChhH
Confidence 5 77777777788887765443
No 132
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.4e-15 Score=127.44 Aligned_cols=82 Identities=9% Similarity=0.076 Sum_probs=69.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCe-eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V-~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
...++|||+|||+++|+++|+++|+.||.| ..|+|+++. + + ..||||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~----------g-------~~~G~afV~F~~~~~a~~Al 74 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-N----------G-------QGLGQALVQFKNEDDARKSE 74 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-T----------S-------SCSSCEEEECSSHHHHHHHG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999999 899997653 1 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecC
Q 009228 365 AELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~~ 386 (539)
+. |+..+.++.|+|.++....
T Consensus 75 ~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 75 RL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp GG-CSEEETTEEEEEEEECHHH
T ss_pred Hh-CCCccCCeEEEEEECCHHH
Confidence 96 8888877778887775443
No 133
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=1.5e-14 Score=127.38 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCC---eeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~---V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
...++|||+|||+++|+++|+++|+.||. |..|+|+++.. + ..||||||+|++.++|++
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-----------g-------~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-----------G-------RQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-----------S-------CEEEEEEEEBSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-----------C-------CCCeEEEEEECCHHHHHH
Confidence 35689999999999999999999999999 89999986532 1 238999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009228 363 AIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~~ 383 (539)
||+ ||+..+.++-|+|.+..
T Consensus 77 Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 77 ALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp HGG-GTTEEETTEEEEEEEEC
T ss_pred HHh-cCCCeECCeEEEEEECC
Confidence 999 99988877777776654
No 134
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=7e-14 Score=125.66 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=67.9
Q ss_pred cceeEEEecCCCCCCHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
..++|||+||++++++++|+ ++|++||.|..|.|... + ..||||||+|++.++|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-------------~-------~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-------------D-------DNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-------------C-------SSCCCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-------------C-------CcCCEEEEEECCHHHHHH
Confidence 46799999999999999876 79999999999988421 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009228 363 AIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~~~ 384 (539)
||+.||+..+.++.|+|.++..
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCC
T ss_pred HHHHHCCCEeCCCEEEEEEccC
Confidence 9999999999999999988754
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=2e-15 Score=131.59 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=71.0
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeE--------EEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~--------VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet 356 (539)
+...++|||+|||.++++++|+++|++||.|.. |+|..+..+ + ..+|||||+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----------g-------~~~g~afV~f~~ 66 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET----------G-------KLKGEATVSFDD 66 (116)
Confidence 346789999999999999999999999999998 888654321 1 238999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeeec
Q 009228 357 VELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 357 ~E~AekAv~~LN~~~~~~~glrV~l~~~~ 385 (539)
.++|++||+.||+..+.++.|+|.++..+
T Consensus 67 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 67 PPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 99999999999999988888888776543
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=4.5e-14 Score=121.86 Aligned_cols=72 Identities=24% Similarity=0.175 Sum_probs=65.6
Q ss_pred cceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+||+.+ +++++|+++|++||.|..|+|. +|||||+|++.++|++||+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------------------------KGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 4589999999999 9999999999999999999981 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.++.
T Consensus 81 ~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHTTCEETTEECCEEESC
T ss_pred HcCCCEECCeEEEEEECC
Confidence 999999888777777764
No 137
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.49 E-value=1.7e-13 Score=124.20 Aligned_cols=79 Identities=29% Similarity=0.343 Sum_probs=67.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|.++...+ ..+|||||+|++.++|++|++
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG-----------------RPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCC--CceEEEE
Q 009228 366 ELNDEGNWR--SGLRVRL 381 (539)
Q Consensus 366 ~LN~~~~~~--~glrV~l 381 (539)
.||+..+.+ +.|+|.+
T Consensus 150 ~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp HHTTCCCTTCSSCCEEEE
T ss_pred HhcCCEecCCCeEEEEEe
Confidence 999998876 6677665
No 138
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.49 E-value=1.4e-14 Score=132.31 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=67.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||+++|+++|+++|+.|| |..|+|+++++ + ..||||||+|++.|+|++||
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-----------g-------~srGfaFV~F~~~e~A~~Al- 103 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-----------G-------RVTGEADVEFATHEEAVAAM- 103 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-----------S-------CSSCCCEEECSHHHHHHHHT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-----------C-------CCceEEEEEeCCHHHHHHHH-
Confidence 4568999999999999999999999999 77999976532 1 24899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009228 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~ 385 (539)
+||+..+.++-|+|.+....
T Consensus 104 ~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 104 SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp TCCSCSSSSCCCCCEECCCS
T ss_pred hhCCCEECCEEEEEEECCCC
Confidence 68999888887877766543
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.49 E-value=2.3e-14 Score=114.75 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=63.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
||||+|||.++++++|+++|+.||.|..|+|..+..++ .++|||||+|++.++|++|++ +++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai~-~~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN-----------------KRRGFCFITFKEEEPVKKIME-KKY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCS-----------------SSCCCEEEECSSSHHHHHHHT-TSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CcCCEEEEEECCHHHHHHHHH-hCC
Confidence 69999999999999999999999999999996553211 238999999999999999999 477
Q ss_pred CCCCCCceEEEE
Q 009228 370 EGNWRSGLRVRL 381 (539)
Q Consensus 370 ~~~~~~glrV~l 381 (539)
..+.++.++|.+
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 1iqt_A 63 HNVGLSKCEIKV 74 (75)
T ss_dssp CCBTTBCCCEEE
T ss_pred CeECCEEEEEEE
Confidence 788787777765
No 140
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=122.26 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=67.2
Q ss_pred cceeEEEecCCCCC------CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHH
Q 009228 287 QSRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 287 ~~rTVyV~nLP~d~------t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~A 360 (539)
..++|||+|||.++ |+++|+++|++||.|..|+|.+ .+ + .+||||||+|++.++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~----------g-------~~~G~afV~f~~~~~A 74 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--ED----------G-------KTKGYIFLEYASPAHA 74 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BT----------T-------BSCCEEEEEECSSSHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CC----------C-------CeeeEEEEEECCHHHH
Confidence 46899999999999 7899999999999999999852 11 1 2389999999999999
Q ss_pred HHHHHHHcCCCCCCC-ceEEEEee
Q 009228 361 EKAIAELNDEGNWRS-GLRVRLML 383 (539)
Q Consensus 361 ekAv~~LN~~~~~~~-glrV~l~~ 383 (539)
++||+.||+..+.++ .|+|.++.
T Consensus 75 ~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 75 VDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHHhCCcccCCCceEEEEEcc
Confidence 999999999998887 78887764
No 141
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.48 E-value=7.5e-14 Score=138.21 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=66.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|++||.|+.|+|..+ .+|||||+|++.++|++||+.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~----------------------~~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG----------------------RHDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 4688999999999999999999999999999999632 158999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 009228 367 LNDEGNW-RSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~-~~glrV~l~~ 383 (539)
||+..++ ++.|+|.++.
T Consensus 264 l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 264 LQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCCcEeCCCCEEEEEEec
Confidence 9999888 7778887753
No 142
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.48 E-value=7.3e-14 Score=130.13 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=70.8
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|.++..++ ..+|||||+|++.++|++|++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-----------------LSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC-----------------SEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 175 ~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HcCCCEECCEEEEEEECCC
Confidence 9999998887788777654
No 143
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=2.6e-13 Score=122.27 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=66.8
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++++++|+++|+.||.|..|+|..+..++ .++|||||+|++.++|++|+
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 147 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG-----------------VSRGVGFIRFDKRIEAEEAI 147 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------CccceEEEEeCCHHHHHHHH
Confidence 3456899999999999999999999999999999997653211 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEE
Q 009228 365 AELNDEGNWRSGLRVR 380 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~ 380 (539)
+.||+..+.++.+.|.
T Consensus 148 ~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 148 KGLNGQKPSGATEPIT 163 (167)
T ss_dssp HHHTTCCCTTCSSCCE
T ss_pred HHhcCCccCCCccceE
Confidence 9999998887664333
No 144
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-14 Score=119.11 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=64.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.| +|+.+. .+ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-----------~g-------~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-----------NG-------KSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-----------SS-------CBCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-----------CC-------CEeeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999987 443321 11 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.+...
T Consensus 72 ~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 72 SCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp HTSSEEETTEEEEEEECSS
T ss_pred HhCCCEeCCeEEEEEEcCC
Confidence 9999888877777777643
No 145
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=115.71 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=67.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEE-EeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~Vr-I~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+|||.++|+++|+++|+.||.|+.|+ |+.++. .+.|||+|++.++|++||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---------------------~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---------------------TAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---------------------SEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999995 654321 3349999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009228 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++.|+|.++...
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 99999999999999887654
No 146
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.48 E-value=6.6e-14 Score=115.00 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=62.9
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhc----C-------CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEe
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEY 354 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~f----G-------~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEF 354 (539)
...++|||+|||.++|+++|+++|++| | .|..|+|.++ ||||||+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------------------kg~afV~f 60 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------------------KNFAFLEF 60 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------------------SSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------------------CcEEEEEc
Confidence 357899999999999999999999999 8 9999998432 78999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCCceEEE
Q 009228 355 ESVELAEKAIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 355 et~E~AekAv~~LN~~~~~~~glrV~ 380 (539)
++.++|++|+ .||+..+.++.|+|.
T Consensus 61 ~~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 61 RSVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCHHHHHHHH-hcCCCEECCeEEEEe
Confidence 9999999999 899998777666654
No 147
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.48 E-value=2.9e-14 Score=122.98 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=68.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCC---eeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~---V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
...++|||+|||+++|+++|+++|+.||. |..|+|+++.. + ..+|||||+|++.++|++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-----------g-------~~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-----------G-------KRRGDALIEMESEQDVQK 70 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-----------S-------TTCSEEEEEBSSHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-----------C-------CEeeEEEEEECCHHHHHH
Confidence 35689999999999999999999999998 99999976532 1 238999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009228 363 AIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~~~ 384 (539)
||+ ||+..+.++-|+|..+..
T Consensus 71 Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 71 ALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHT-TTTCCSSSSCCCCEECCH
T ss_pred HHH-hCcceeCCeEEEEEECCH
Confidence 999 999888888888777643
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.48 E-value=2.9e-14 Score=129.69 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=68.3
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCC---eeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~---V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
.+.++|||+|||+++|+++|+++|+.||. |+.|+|++++. + .+||||||+|++.++|++
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-----------g-------~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-----------G-------RQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-----------S-------CEEEEEEEECSSHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-----------C-------CCCeEEEEEECCHHHHHH
Confidence 35689999999999999999999999999 89999987532 1 248999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009228 363 AIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~~ 383 (539)
||+ ||+..+.++-|+|....
T Consensus 104 Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 104 ALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp HHT-TTEEESSSSEEEEEECC
T ss_pred HHh-cCCCEECCEEEEEEECC
Confidence 999 99998888777776654
No 149
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=1.3e-13 Score=125.70 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=82.1
Q ss_pred cCHHHHHHhhhcCCceEEeecccccccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCC
Q 009228 248 SSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSG 327 (539)
Q Consensus 248 ~d~~~V~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~ 327 (539)
.+.+.+..|| ......+.....+|++..... .....++|||+|||.++|+++|+++|++||.|..|+|.++..++
T Consensus 59 ~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 133 (172)
T 2g4b_A 59 RSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 133 (172)
T ss_dssp SSHHHHHHHG-GGTTCEETTEECEEECCSSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC
T ss_pred CCHHHHHHHH-HhCCcEecCceeeecCCcccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 3556666666 333333432222333322111 12346899999999999999999999999999999997653211
Q ss_pred CCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009228 328 GGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 328 ~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~ 382 (539)
.++|||||+|++.++|++|++.||+..+.++.|+|.++
T Consensus 134 -----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 134 -----------------LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp -----------------SEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred -----------------CcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 23899999999999999999999999988877887764
No 150
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=6.1e-14 Score=117.66 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=68.1
Q ss_pred ccceeEEEecCCCCCCHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
...++|||+|||.++++++|+ ++|+.||.|..|+|.. .+ ..+|||||+|++.++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-------------~~-------~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-------------SL-------KMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-------------HH-------HHTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-------------CC-------CcCcEEEEEeCCHHHHH
Confidence 357899999999999999999 9999999999999842 11 13789999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009228 362 KAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 362 kAv~~LN~~~~~~~glrV~l~~~ 384 (539)
+|++.||+..+.++.|+|.++..
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSS
T ss_pred HHHHHhCCCEECCcEEEEEEccC
Confidence 99999999998877777777644
No 151
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.5e-14 Score=123.05 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=64.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
+.++|||+|||+++|+++|+++|+.| .|..|+|++++. + ..||||||+|++.++|++|| .
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-----------g-------~~~G~afV~F~~~~~a~~Al-~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-----------G-------RNNGNGLVKFLSPQDTFEAL-K 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-----------C-------CCCSEEEEECSSHHHHHHHH-H
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-----------C-------CCCeEEEEEECCHHHHHHHH-h
Confidence 35799999999999999999999999 899999976532 1 23899999999999999999 5
Q ss_pred HcCCCCCCCceEEEEe
Q 009228 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~glrV~l~ 382 (539)
||+..+.++-|+|..+
T Consensus 75 ~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 75 RNRMLMIQRYVEVSPA 90 (109)
T ss_dssp TTTEEETTEEEEEEEC
T ss_pred cCCCeECCeEEEEEEC
Confidence 9988877766666544
No 152
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.2e-14 Score=126.68 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=67.6
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||+++|+++|+++|+.||.|..+.++.+..+ + ..+|||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~----------g-------~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN----------G-------KATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT----------S-------SEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC----------C-------CCCeEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999987444332211 1 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++-|+|.++..
T Consensus 86 -~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 -RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp -SCSBCSTTSCBEEEEECH
T ss_pred -hCCCeECCcEEEEEECCH
Confidence 999999999999888754
No 153
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=5.1e-14 Score=118.12 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=64.8
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...++|||+|||.++|+++|+++|+.||.|+.| . .. + ..+|||||+|++.++|++|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~-~~-------------~-------~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S-QD-------------G-------KSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E-ET-------------T-------EEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C-CC-------------C-------CcceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999998777 1 11 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009228 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.++.
T Consensus 71 ~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 71 EEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp HHTTEEEETTEEEEEEECS
T ss_pred HHhCCCEECCeEEEEEEcC
Confidence 9999988877777777654
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.2e-13 Score=132.28 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=68.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..+||||+|||.++|+++|+++|++||+|++|+|+++..++ .++|||||+|++.++|++||+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-----------------RSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCC-----------------CccccccceeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764321 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.++.++|....
T Consensus 77 ~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hhhhhcCCccccccccc
Confidence 99988877777776653
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.46 E-value=1.7e-13 Score=129.33 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=71.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||+.++++++|+++|++||.|+.|.|+++. + + ..+|||||+|++.++|++||+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~----------g-------~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S----------G-------RSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-T----------S-------SCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C----------C-------CEeeEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653 1 1 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.++..
T Consensus 149 lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 149 YKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp STTCBCSSSBCEEEEESS
T ss_pred hCCCEECCEEEEEEEecC
Confidence 999999999999998754
No 156
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=116.86 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=64.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.|+ .|+|+.+..+ ...+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~-----------------~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET-----------------GSSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS-----------------CSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC-----------------CCcCcEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999885 4555444221 1238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 73 ~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 73 AMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp HHTTCEETTEECEEEECCC
T ss_pred HhCCCeECCeEEEEEEecC
Confidence 9999998888888877654
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=116.31 Aligned_cols=72 Identities=26% Similarity=0.290 Sum_probs=63.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|| ++|+++|+++|++||+|..|+|.. .||||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 5689999996 899999999999999999999831 288999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009228 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~ 383 (539)
||+..+.++.|+|.++.
T Consensus 69 l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 69 LNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTTEEETTEEEEEECCS
T ss_pred hCCCeECCeEEEEEECC
Confidence 99998877667666654
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=2.8e-13 Score=127.29 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=64.8
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
..+|||+||++++|+++|+++|++||+|++|+|... ..+|||||||++.++|++|++.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---------------------~~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------------------NNQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---------------------SSCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------CCCCEEEEEECCHHHHHHHHHHh
Confidence 457999999999999999999999999999999521 02789999999999999999999
Q ss_pred cCCCCCC--CceEEEEee
Q 009228 368 NDEGNWR--SGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~--~glrV~l~~ 383 (539)
|+..+++ +.|+|.+..
T Consensus 105 nG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp TTBCSSSSCSCEEEEECS
T ss_pred CCCEecCCCcEEEEEEec
Confidence 9999976 566666654
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=2.1e-13 Score=123.61 Aligned_cols=112 Identities=15% Similarity=0.243 Sum_probs=82.0
Q ss_pred CHHHHHHhhhcCCceEEeecccccccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCC
Q 009228 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (539)
Q Consensus 249 d~~~V~~ALr~S~~LeVsedg~kVRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~ 328 (539)
+.+.+..||+.. ..+ +|+.|+-...... ......++|||+|||.++|+++|+++|+.||.|..|+|..+..++
T Consensus 54 ~~~~a~~A~~~~--~~~--~g~~i~v~~~~~~--~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g- 126 (167)
T 2cjk_A 54 KPSSVDEVVKTQ--HIL--DGKVIDPKRAIPR--DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG- 126 (167)
T ss_dssp STHHHHHHHHSC--CEE--TTEECCCEECCCH--HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS-
T ss_pred cHHHHHHHHhcc--ccc--CCeEcccccccch--hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC-
Confidence 455556666642 223 3443332222221 223457899999999999999999999999999999997653211
Q ss_pred CCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009228 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 329 ~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV~l~~~ 384 (539)
.++|||||+|++.++|++|++ +++..+.++.|+|.++..
T Consensus 127 ----------------~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 127 ----------------QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp ----------------TTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred ----------------ccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 238999999999999999998 898888888888887654
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=115.09 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=61.2
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|..| ++ +.. . .+ ||||+|++.++|++||+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~--------------~-----g~-~afV~f~~~~~a~~ai~- 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKD--------------K-----GV-FAIVEMGDVGAREAVLS- 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSS--------------S-----CC-EEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCC--------------C-----Cc-EEEEEECCHHHHHHHHh-
Confidence 46799999999999999999999999999998 32 211 0 13 89999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009228 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~glrV~l~ 382 (539)
||+..+.++.|+|..+
T Consensus 64 l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 64 QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CSCCEETTEECCCBCS
T ss_pred cCCeEECCEEEEEEEC
Confidence 9999888777766644
No 161
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=8.8e-14 Score=118.10 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=67.0
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...++|||+|||.++++++|+++|+.||.|..|+|..+. + + ..||||||+|++.++|++|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~Ai 67 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-T----------G-------VSKGYGFVSFYNDVDVQKIV 67 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-T----------S-------CEEEEEEEEESSCCCHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C----------C-------CccceEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997653 1 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009228 365 AELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~~ 385 (539)
+ ++..+.++.|.|.....+
T Consensus 68 ~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 68 E--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp T--CCCEETTEECEEEEEEEC
T ss_pred h--CCCeECCEEEEEEECCcC
Confidence 9 666666666776666543
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=2.8e-13 Score=122.08 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=68.9
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
+++|||+|||.++++++|+++|+.||.|..|+|+.+..++ ..+|||||+|.+.++|++|++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~-----------------~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-----------------QSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------cceeEEEEEECCHHHHHHHHHHc
Confidence 5799999999999999999999999999999998653211 23899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009228 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 N~~~~~~~glrV~l~~ 383 (539)
|+..+.++.|+|.+..
T Consensus 65 ~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYAR 80 (167)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCccCCceEEEEecC
Confidence 9998888777777664
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1e-13 Score=122.90 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=56.6
Q ss_pred cceeEEE--ecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 287 QSRIVVA--ENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV--~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..++||| +||++++++++|+++|++||+|..|.|.. .||||||+|++.++|++|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4678999 55999999999999999999999998831 1789999999999999999
Q ss_pred HHHcCCCC
Q 009228 365 AELNDEGN 372 (539)
Q Consensus 365 ~~LN~~~~ 372 (539)
+.||+.++
T Consensus 81 ~~lnG~~~ 88 (114)
T 2cq2_A 81 VTLNGKEV 88 (114)
T ss_dssp HHTTTCEE
T ss_pred HHhCCCEE
Confidence 99999865
No 164
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=1.3e-13 Score=114.47 Aligned_cols=74 Identities=26% Similarity=0.240 Sum_probs=65.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++| .|..|+|. ..||||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----------------------~~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----------------------RNKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----------------------GGGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 46799999999999999999999999 99999982 1288999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.++..
T Consensus 60 l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp HTTEEETTEEEEEEECCC
T ss_pred hCCCeECCcEEEEEEcCC
Confidence 999988887788777643
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.8e-13 Score=122.03 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=68.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
|||||+|||.++|+++|+++|++||.|..|+|+.+.. + ..+|||||+|.+.++|++|++.||
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-----------N-------KNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6999999999999999999999999999999976531 1 238999999999999999999999
Q ss_pred CCCCCCCceEEEEeee
Q 009228 369 DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~ 384 (539)
+..+.++.++|.+...
T Consensus 63 ~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 63 GKQIENNIVKINWAFQ 78 (166)
T ss_dssp TCEETTEECEEEECCC
T ss_pred CCccCCCeeEEEEcCC
Confidence 9998887788777643
No 166
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=123.39 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=66.6
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEE--------EEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI--------RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~V--------rI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (539)
..++|||+|||.++|+++|+++|+.||.|..+ ++.. ....+|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~--------------------~g~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--------------------EGRMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE--------------------ETTTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc--------------------CCCcccEEEEEeCCHH
Confidence 56899999999999999999999999999874 3321 1124899999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeeec
Q 009228 359 LAEKAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 359 ~AekAv~~LN~~~~~~~glrV~l~~~~ 385 (539)
+|++||+.||+..+.++.|+|.++...
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999988888888877543
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=2.9e-13 Score=130.25 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=68.0
Q ss_pred cceeEEEecCC-CCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP-~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
+++||||+||+ +++|+++|+++|++||.|.+|+|+++ .||||||+|++.++|++||+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46899999999 89999999999999999999999542 17899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009228 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.+..
T Consensus 61 ~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHTTCEETTEECEEEECS
T ss_pred HhCCCEECCceEEEEEcc
Confidence 999999988888888764
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=3.9e-13 Score=112.70 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=59.7
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
....+|||+|||+++|+++|+++|++||.|+.|+|.++ +||||||+|++.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~--- 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS--- 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH---
Confidence 45679999999999999999999999999999999532 28999999999999983
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
|++..+..+|++|.+...
T Consensus 64 -~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -HTTCEEEETTEEEEEEEC
T ss_pred -HcCCCcccCCEEEEEEEc
Confidence 566666666777766543
No 169
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=118.09 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=55.8
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|. +.++.+..+. .....||||||+|++.++|++||+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~--------------~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESK--------------SYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSC--------------CCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCC--------------CCCCcccEEEEEECCHHHHHHHHHh
Confidence 468999999999999999999999999999 7775543210 0012489999999999999999999
Q ss_pred HcC
Q 009228 367 LND 369 (539)
Q Consensus 367 LN~ 369 (539)
|++
T Consensus 72 ~~~ 74 (114)
T 2dnl_A 72 CLE 74 (114)
T ss_dssp SEE
T ss_pred hhh
Confidence 853
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.41 E-value=6e-13 Score=118.03 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=67.5
Q ss_pred cccCCCCcchhhhhccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEE
Q 009228 272 IKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAF 351 (539)
Q Consensus 272 VRR~~Pl~e~~~~~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AF 351 (539)
.+|..++.+.. .....++|||+|| ++|+++|+++|++||.|..|+|.. .|||||
T Consensus 24 ~~r~~~~~~~~-~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~aF 77 (121)
T 2bz2_A 24 FRRSDSFPERR-APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAF 77 (121)
T ss_dssp ------------CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEEE
T ss_pred CCCCCCCCCCC-CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEEE
Confidence 34444444322 2346789999996 799999999999999999999941 288999
Q ss_pred EEeCCHHHHHHHHHHHcCCCCCCCceEEEEeeec
Q 009228 352 VEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 352 VEFet~E~AekAv~~LN~~~~~~~glrV~l~~~~ 385 (539)
|+|++.++|++||+.||+..+.++.|+|.++...
T Consensus 78 V~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 78 VTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp EECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred EEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 9999999999999999999998888888887543
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.5e-13 Score=110.89 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=59.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..|+|..+ .||||||+|++.++|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~--- 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSL--- 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHH---
Confidence 4689999999999999999999999999999999532 288999999999999754
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
++..+...+++|.+...
T Consensus 59 -~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 59 -CGEDLIIKGISVHISNA 75 (88)
T ss_dssp -TTCEEEETTEEEEEECC
T ss_pred -hcCCceeCCEEEEEEec
Confidence 44445456677766544
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.41 E-value=6.3e-13 Score=125.44 Aligned_cols=81 Identities=21% Similarity=0.203 Sum_probs=68.2
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++||
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 87 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM-----------------KHKGFAFVEYEVPEAAQLAL 87 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC------------------CCCSEEEEEESSHHHHHHHH
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-----------------ccCceEEEEeCCHHHHHHHH
Confidence 3457899999999999999999999999999999997653211 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009228 365 AELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~ 382 (539)
+.||+..+.++.|+|...
T Consensus 88 ~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHSSCCCC-CCCEEECC
T ss_pred HHccCCeeCCeeEEEecC
Confidence 999999988887777543
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.40 E-value=2.4e-13 Score=122.25 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=64.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCee--EEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK--TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~--~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+.++|||+|||+++|+++|+++|+.| .|. .|+|++++. + ..||||||+|++.|+|++||
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-----------G-------rsrGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-----------G-------KITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-----------S-------SSCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-----------C-------CCceEEEEEECCHHHHHHHH
Confidence 45799999999999999999999999 677 899876532 1 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009228 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~ 383 (539)
+. ++..+.++-|+|....
T Consensus 102 ~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 102 GK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp TT-TTCCBTTBCCCCEEEC
T ss_pred HH-CCCEECCEEEEEEECC
Confidence 94 6677777777776654
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=5.3e-13 Score=122.32 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=65.0
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||+|..| ... ...+|||||+|++.++|++|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~-------------------~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQD-------------------GKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSS-------------------SSCCSEEEEECSSHHHHHHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCC-------------------CCCceEEEEEECCHHHHHHHH
Confidence 4467899999999999999999999999998777 110 123889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009228 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.++.
T Consensus 154 ~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHTEEEETTEEEEEEECS
T ss_pred HHhCCCEECCeEEEEEecC
Confidence 9999988887777777654
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.40 E-value=4.3e-13 Score=121.49 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=68.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|..|+|+.+..+ + ..+|||||+|++.++|++|++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT----------G-------YSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTT----------T-------EECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCC----------C-------ccceEEEEEECCHHHHHHHHHh
Confidence 3589999999999999999999999999999999754321 1 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009228 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~ 384 (539)
|++..+.++.|+|.+...
T Consensus 65 l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARP 82 (168)
T ss_dssp HTTCEETTEECEEEECCC
T ss_pred cCCCEeCCcEEEEEecCC
Confidence 999988777777776543
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.40 E-value=1.5e-12 Score=122.05 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=67.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+|||.++++++|+++|+.|| .|..|+|+.+ .+|+|||+|++.++|++|++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHH
Confidence 378999999999999999999999999 9999999532 17899999999999999999
Q ss_pred HHcCCCCC-CCceEEEEee
Q 009228 366 ELNDEGNW-RSGLRVRLML 383 (539)
Q Consensus 366 ~LN~~~~~-~~glrV~l~~ 383 (539)
.||+..+. ++.|+|.+..
T Consensus 177 ~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 177 DLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp HHTSSCCSSCCSCCEEEEC
T ss_pred HhcCCccCCCCeEEEEeec
Confidence 99999988 7788888764
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=123.11 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=63.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCe----eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V----~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
..++|||+|||+++|+++|+++|+.||.| ..|+|+++.+ + ..||||||+|++.++|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~-----------g-------r~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD-----------G-------RPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT-----------S-------CEEEEEEECCSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC-----------C-------CEeeEEEEEECCHHHHHH
Confidence 46799999999999999999999999975 6899976521 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEe
Q 009228 363 AIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 363 Av~~LN~~~~~~~glrV~l~ 382 (539)
||+. |+..+.++-|+|...
T Consensus 84 Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 84 ALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp HHTT-TTEESSSCEECCEEE
T ss_pred HHHh-CCCeeCCeEEEEEEC
Confidence 9995 887776665555544
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=1.2e-12 Score=117.41 Aligned_cols=71 Identities=27% Similarity=0.254 Sum_probs=60.7
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccce-EEEEeCCHHHHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~-AFVEFet~E~AekAv~~L 367 (539)
..|||+||++.+|+++|+++|++||+|+.|+|... .|| |||||++.++|++|++.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 45789999999999999999999999999999420 365 999999999999999999
Q ss_pred cCCCCCCCc--eEEEEe
Q 009228 368 NDEGNWRSG--LRVRLM 382 (539)
Q Consensus 368 N~~~~~~~g--lrV~l~ 382 (539)
|+..++++. |+|.++
T Consensus 83 nG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYA 99 (124)
T ss_dssp TTCCCBTTBSEEEEECC
T ss_pred CCCEecCCCeEEEEEEe
Confidence 999988754 555444
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.39 E-value=1.1e-12 Score=119.36 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
+.++|||+|||.++|+++|+++|++||.|..|+|+++...+. ...+|||||+|++.++|++|++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP---------------PQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS---------------CEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987532110 02389999999999999999999
Q ss_pred HcCCCCC
Q 009228 367 LNDEGNW 373 (539)
Q Consensus 367 LN~~~~~ 373 (539)
||+..+.
T Consensus 67 l~~~~~~ 73 (175)
T 3nmr_A 67 LHNMKVL 73 (175)
T ss_dssp HTTTCCC
T ss_pred hcCcEEc
Confidence 9997765
No 180
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.39 E-value=8e-13 Score=131.44 Aligned_cols=82 Identities=24% Similarity=0.291 Sum_probs=69.0
Q ss_pred ccceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
...++|||+|||.+ +|+++|+++|+.||.|..|+|..+... + ...+|||||+|++.++|++|+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---------t-------g~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE---------H-------SFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-------------------CCCEEEEEEESSHHHHHHHG
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc---------C-------CCCceEEEEEeCCHHHHHHHH
Confidence 45689999999999 999999999999999999999754210 0 124899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 272 -~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp -GGTTEEETTEEEEEEECCC
T ss_pred -HhcCCEECCcEEEEEEecC
Confidence 9999998887777777654
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.39 E-value=9.5e-13 Score=119.23 Aligned_cols=73 Identities=26% Similarity=0.306 Sum_probs=62.2
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccce-EEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~-AFVEFet~E~AekAv~~ 366 (539)
-..|||+||++.+|+++|+++|++||+|.+|+|... .+|| |||||++.++|++|++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 347899999999999999999999999999998521 1667 99999999999999999
Q ss_pred HcCCCCCCC--ceEEEEe
Q 009228 367 LNDEGNWRS--GLRVRLM 382 (539)
Q Consensus 367 LN~~~~~~~--glrV~l~ 382 (539)
||+..+.+. .|+|.+.
T Consensus 86 LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 86 LDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp HTTCEEETTEEEEEEEEC
T ss_pred cCCCeecCCCcEEEEEec
Confidence 999998874 4555544
No 182
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=7.9e-13 Score=122.92 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=68.6
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ ..+|||||+|.+.++|++||
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 72 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK-----------------RSRGFGFVTYATVEEVDAAM 72 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCC-----------------CccceEEEEeCCHHHHHHHH
Confidence 3467899999999999999999999999999999998753221 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009228 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~~ 384 (539)
+. ++..+.++.|+|.....
T Consensus 73 ~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 73 NA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp HT-CSCEETTEECEEEECCC
T ss_pred hc-CCCEECCEEeeeecccC
Confidence 85 77777777777776643
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=9.4e-13 Score=130.66 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=68.7
Q ss_pred hccceeEEEecCCCCC---------CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC
Q 009228 285 ELQSRIVVAENLPEDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~---------t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe 355 (539)
....+||||+||+.++ ++++|+++|++||+|+.|+|+. +||||||+|+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeC
Confidence 3467999999999998 7999999999999999999963 2889999999
Q ss_pred CHHHHHHHHHHHcCCCC------------CCCceEEEEeeecC
Q 009228 356 SVELAEKAIAELNDEGN------------WRSGLRVRLMLRRG 386 (539)
Q Consensus 356 t~E~AekAv~~LN~~~~------------~~~glrV~l~~~~~ 386 (539)
+.++|++|++.|++..+ .++.|.|.++....
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 99999999999999998 67789999886544
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=111.91 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=62.9
Q ss_pred cee-EEEecCCCCCCHHH----HHHHhhhc-CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 288 SRI-VVAENLPEDHCHQN----LMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 288 ~rT-VyV~nLP~d~t~e~----L~e~Fs~f-G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
+.| |||.|||+++++++ |+++|+.| |+|..| + .|+|||+|++.|+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-t--------------------------gG~AfV~F~~~esA~ 60 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-T--------------------------GCSAILRFINQDSAE 60 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-C--------------------------TTCEEEEESSHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-e--------------------------cCEEEEEECCHHHHH
Confidence 445 99999999999987 55899999 599887 1 368999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeecC
Q 009228 362 KAIAELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 362 kAv~~LN~~~~~~~glrV~l~~~~~ 386 (539)
+|++.||+..+.++.|+|.++..+.
T Consensus 61 ~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 61 RAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp HHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred HHHHHhcCCccCCceEEEEecCCCc
Confidence 9999999999999999999876543
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.34 E-value=2.8e-12 Score=124.18 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=69.5
Q ss_pred hccceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 285 ELQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 285 ~~~~rTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
...+++|||+|||. ++++++|+++|+.||.|..|+|++++ +|||||+|.+.|+|++|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~A 88 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLA 88 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHH
Confidence 34678999999999 99999999999999999999996431 67999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009228 364 IAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~ 384 (539)
++.||+..+.++.|+|.+...
T Consensus 89 i~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 89 MSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp HHHHTTCBCSSSBCEEECCSC
T ss_pred HHHhCCCeECCeEEEEEEecC
Confidence 999999998888888877653
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=121.72 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=68.5
Q ss_pred cceeEEEecCCC-CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~-d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
.+++|||+|||. ++++++|+++|+.||.|..|+|+++. +|||||+|++.++|++|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 99999999999999999999996431 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.+...
T Consensus 60 ~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 60 HLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHTTCCCSSCCCEEEECCC
T ss_pred HhCCCeecCeEEEEEEecC
Confidence 9999999888888887654
No 187
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=4.4e-12 Score=110.17 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=66.6
Q ss_pred ccceeEEEecCCC-----CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHH
Q 009228 286 LQSRIVVAENLPE-----DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 286 ~~~rTVyV~nLP~-----d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~A 360 (539)
..+++|+|+||-. +.++++|+++|++||+|.+|+|+++.... ...+|||||+|++.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~----------------~~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAP----------------DDEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCC----------------TTTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCC----------------CCCcEEEEEEECCHHHH
Confidence 4578999999962 34789999999999999999997653210 01389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEee
Q 009228 361 EKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 361 ekAv~~LN~~~~~~~glrV~l~~ 383 (539)
++|++.||+..+.++.|+|.++.
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHCCCEECCcEEEEEEcC
Confidence 99999999999888888887764
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.33 E-value=3.4e-12 Score=126.32 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=69.3
Q ss_pred ccceeEEEecCCCCCCHHHHH----HHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~----e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
..+++|||+||+.++|+++|+ ++|+.||.|..|+|++. + ..||||||+|++.++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-------------~-------~~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-------------L-------KMRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-------------C-------CcceEEEEEECCHHHHH
Confidence 457899999999999999977 89999999999999541 1 13899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009228 362 KAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 362 kAv~~LN~~~~~~~glrV~l~~~ 384 (539)
+||+.||+..++++.|+|.+...
T Consensus 67 ~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 67 NALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHHhcCCeeCCcEEEEEEecc
Confidence 99999999998888888888744
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.31 E-value=3.1e-12 Score=126.42 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=65.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|+.||.|..|+|+.+.+ + ..+|||||+|++.++|.+||+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR-----------G-------RATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-----------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC-----------C-------CcCcEEEEEeCCHHHHHHHHHH
Confidence 357999999999999999999999999999999976521 1 1389999999999999999999
Q ss_pred HcCCCCC----CCceEEEEeee
Q 009228 367 LNDEGNW----RSGLRVRLMLR 384 (539)
Q Consensus 367 LN~~~~~----~~glrV~l~~~ 384 (539)
||+..+. ++.+.|..+..
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCC
T ss_pred hcCCeEEecCCCceEEEeeccc
Confidence 9664433 55677776654
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=4.9e-12 Score=125.28 Aligned_cols=82 Identities=29% Similarity=0.247 Sum_probs=70.5
Q ss_pred hccceeEEEecCCCCC-CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~-t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
....++|||+|||.++ ++++|+++|+.||.|..|+|..+.+ ...+|+|||+|++.++|++|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~------------------g~~~g~afV~f~~~~~A~~A 242 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD------------------GQLKGFAVLEYETAEMAEEA 242 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS------------------CCEEEEEEEECSSHHHHHHH
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC------------------CCcccEEEEEeCCHHHHHHH
Confidence 3567899999999995 9999999999999999999976521 12389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeee
Q 009228 364 IAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~~ 384 (539)
++.||+..+.++.|+|.++..
T Consensus 243 ~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 243 QQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHHTTCEETTEECEEEECCS
T ss_pred HHHhCCCccCCeEEEEEEecC
Confidence 999999998888788877654
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.29 E-value=2.8e-12 Score=116.16 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=60.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
++++|||+|||.++|+++|+++|+.||.|..|+|+++..++ .++|||||+|++.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG-----------------RSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTS-----------------SCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCC-----------------CccceEEEEEccHHHHHHHHhc
Confidence 46899999999999999999999999999999997653221 2389999999999999999995
Q ss_pred HcCCCCCCCceEEEE
Q 009228 367 LNDEGNWRSGLRVRL 381 (539)
Q Consensus 367 LN~~~~~~~glrV~l 381 (539)
...+.++.++|..
T Consensus 65 --~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 65 --QHILDGKVIDPKR 77 (167)
T ss_dssp --CCEETTEECCCEE
T ss_pred --ccccCCeEccccc
Confidence 2333344444443
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.8e-12 Score=116.21 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=64.4
Q ss_pred eeEEEecC----CCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC----HHH-
Q 009228 289 RIVVAENL----PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VEL- 359 (539)
Q Consensus 289 rTVyV~nL----P~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet----~E~- 359 (539)
..|||+|| ++++++++|+++|++||+|+.++++.|..++. ++|||||+|.+ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~-----------------slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSAL-----------------PLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCC-----------------EEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------eeeEEEEEECCCCCCcchH
Confidence 57999999 99999999999999999999999998865432 39999999996 333
Q ss_pred ---HHHHHH--HHcCCCCCCCceEEEEe
Q 009228 360 ---AEKAIA--ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 360 ---AekAv~--~LN~~~~~~~glrV~l~ 382 (539)
|.+||+ .||+..+.++.|+|.+-
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 899998 78998888877777763
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.27 E-value=8.7e-12 Score=123.17 Aligned_cols=76 Identities=26% Similarity=0.298 Sum_probs=67.8
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|.+ ++|||||+|.+.++|++|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999953 2789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009228 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.+..
T Consensus 76 ~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp HHHTTCEETTEECEEEECC
T ss_pred HHcCCcEECCceeEeeecc
Confidence 9999999888778777653
No 194
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.26 E-value=1.8e-11 Score=121.26 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=70.7
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|..|+|+++..++ .++|||||+|.+.++|++|++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG-----------------QSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 35799999999999999999999999999999997653221 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009228 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 LN~~~~~~~glrV~l~~~~ 385 (539)
||+..+.++.|+|.+....
T Consensus 157 l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HTTCEETTEECEEEECCGG
T ss_pred hCCCEeCCcEEEEEECCCC
Confidence 9999888888888776543
No 195
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.5e-11 Score=106.79 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=63.8
Q ss_pred ccceeEEEecCCCCC-----------CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEe
Q 009228 286 LQSRIVVAENLPEDH-----------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEY 354 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~-----------t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEF 354 (539)
..+++|+|+||-... ++++|+++|++||.|+.|.|. ++ ..+|||||+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~--------------------~~~G~afV~f 71 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR--------------------HPDGVASVSF 71 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT--------------------CTTCEEEEEC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC--------------------CCCEEEEEEE
Confidence 357899999994332 257999999999999999773 21 0289999999
Q ss_pred CCHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009228 355 ESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 355 et~E~AekAv~~LN~~~~~~~glrV~l~~~ 384 (539)
++.++|++|++.||+..+.++.|+|.++..
T Consensus 72 ~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 72 RDPEEADYCIQTLDGRWFGGRQITAQAWDG 101 (112)
T ss_dssp SCHHHHHHHHHHSTTCEETTEECEEEECCS
T ss_pred CCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 999999999999999988887788887643
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.22 E-value=1.5e-11 Score=111.89 Aligned_cols=72 Identities=24% Similarity=0.352 Sum_probs=61.9
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhc----C-------CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~f----G-------~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe 355 (539)
+.++|||+|||.++|+++|+++|++| | .|..+++.+ .||||||+|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 6 777777632 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009228 356 SVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 356 t~E~AekAv~~LN~~~~~~~glrV~l~ 382 (539)
+.|+|++|+ .||+..+.++.++|...
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~ 85 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRP 85 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECC
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCC
Confidence 999999999 79999887776766653
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.20 E-value=1.3e-11 Score=118.68 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=61.5
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCe--eEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V--~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
..++|||+|||.++|+++|+++|+.||.| +.|+|..++. ..+|||||+|++.|+|.+||
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~-------------------~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS-------------------ERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS-------------------SSSEEEEEECSSHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC-------------------CCceEEEEEeCCHHHHHHHH
Confidence 35789999999999999999999999999 8999864310 12689999999999999999
Q ss_pred HHHcCCCCCCCc
Q 009228 365 AELNDEGNWRSG 376 (539)
Q Consensus 365 ~~LN~~~~~~~g 376 (539)
+.||+..+.+.+
T Consensus 183 ~~lng~~~~g~~ 194 (205)
T 3tyt_A 183 GFLNHYQMKNPN 194 (205)
T ss_dssp HHHTTCEECCSS
T ss_pred HHhCCCCccCCC
Confidence 999998877765
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.19 E-value=4e-11 Score=119.17 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=67.3
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcC-CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG-~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
..++|||+|||.++++++|+++|+.|| .|..|+|..+.. ...+|||||+|.+.++|++|++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~------------------~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF------------------NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC------------------CCcceEEEEEECCHHHHHHHHH
Confidence 478999999999999999999999999 999999965421 1238899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009228 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~LN~~~~~~~glrV~l~~~ 384 (539)
.||+..++++.|+|.+...
T Consensus 178 ~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp HHTTCEETTEECEEEECCC
T ss_pred HhCCCEeCCcEEEEEECCC
Confidence 9999998887787776643
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.19 E-value=4.3e-11 Score=103.78 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=65.0
Q ss_pred cceeEEEecC--CCCC--------CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC
Q 009228 287 QSRIVVAENL--PEDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 287 ~~rTVyV~nL--P~d~--------t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet 356 (539)
.+++|+++|+ +.+. .+++|++.|++||+|.+|.|.++.... ....+|||||+|++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~---------------~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV---------------EVPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB---------------CCTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC---------------CcCCcEEEEEEECC
Confidence 4678999997 3333 346899999999999999997653210 01238999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEee
Q 009228 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 357 ~E~AekAv~~LN~~~~~~~glrV~l~~ 383 (539)
.++|++|++.||+..+.++.|+|.+..
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 999999999999999888888887764
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=2.4e-11 Score=113.00 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=60.4
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhc----C-------CeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~f----G-------~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe 355 (539)
.+|+|||+|||.++|+++|+++|+.| | .|..+++. ..+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----------------------~~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----------------------QDKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----------------------TTTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----------------------CCCCEEEEEeC
Confidence 46899999999999999999999999 4 55666552 13889999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009228 356 SVELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 356 t~E~AekAv~~LN~~~~~~~glrV~l~~ 383 (539)
+.|+|++|| .||+..+.++.|+|....
T Consensus 60 ~~~~A~~Al-~l~g~~~~g~~i~v~~~~ 86 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPH 86 (198)
T ss_dssp CSHHHHHHG-GGTTEEETTEEEEEECCC
T ss_pred CHHHHHHHH-HhcCCEEcCceEEEeCCC
Confidence 999999999 799988777666666543
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.16 E-value=8.7e-12 Score=114.21 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=63.5
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..+.|+.. +. ...||||||+|++.++|++||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~-----------~~-------~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV-----------RT-------GTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEE-----------EE-------ETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEEC-----------CC-------CccccEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999998766333211 11 124899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009228 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~LN~~~~~~~glrV~l~~ 383 (539)
+ ||+..+.++.|+|....
T Consensus 72 ~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 72 E-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp H-GGGEEETTEEEEEECCC
T ss_pred h-cCCCEeCCeEEEEecCC
Confidence 5 99998887767666554
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.12 E-value=6e-11 Score=123.43 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=57.7
Q ss_pred ccceeEEEec--CCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 286 LQSRIVVAEN--LPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 286 ~~~rTVyV~n--LP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
..+++|||+| |+.++|+++|+++|++||+|++|.|.. +||||||+|++.|+|++|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~A 72 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRA 72 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHH
Confidence 3567999999 578999999999999999999998721 288999999999999999
Q ss_pred HHHHcCCCCC
Q 009228 364 IAELNDEGNW 373 (539)
Q Consensus 364 v~~LN~~~~~ 373 (539)
++.||+.++.
T Consensus 73 i~~lnG~~~~ 82 (345)
T 3tht_A 73 YVTLNGKEVV 82 (345)
T ss_dssp HHHTTTCEEE
T ss_pred HHHhCCCccc
Confidence 9999998774
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.11 E-value=9.4e-11 Score=104.06 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=65.9
Q ss_pred ccceeEEEecCC--C---CCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHH
Q 009228 286 LQSRIVVAENLP--E---DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 286 ~~~rTVyV~nLP--~---d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~A 360 (539)
..+++|+++|+- . +..+++|++.|++||+|.+|.|+++..... .....+||+||+|++.++|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~-------------~~~~~~G~~FV~F~~~e~A 84 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASET 84 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSS-------------TTCEEEEEEEEEESSHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcc-------------cCCcceEEEEEEECCHHHH
Confidence 357899999983 2 224689999999999999999987532100 0011379999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEee
Q 009228 361 EKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 361 ekAv~~LN~~~~~~~glrV~l~~ 383 (539)
++|++.||+..+.++.|+|.+..
T Consensus 85 ~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 85 HKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHCCCEECCcEEEEEEcC
Confidence 99999999998888888887763
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.9e-10 Score=97.33 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCce
Q 009228 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (539)
Q Consensus 298 ~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~gl 377 (539)
.++++++|+++|++||+|..|+|+. ..||||||+|++.++|++||+.+++ +.++.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5689999999999999999999952 1289999999999999999998655 446778
Q ss_pred EEEEeeecC
Q 009228 378 RVRLMLRRG 386 (539)
Q Consensus 378 rV~l~~~~~ 386 (539)
+|.++....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 888765443
No 205
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.07 E-value=5e-11 Score=103.09 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=54.3
Q ss_pred EecCCCCCCHHHHHHHh------------hhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHH
Q 009228 293 AENLPEDHCHQNLMKIF------------SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 293 V~nLP~d~t~e~L~e~F------------s~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~A 360 (539)
+.||+.++++++|+++| ++||+|.+|+|+++.. + ..+|||||+|++.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-----------~-------~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-----------D-------HLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-----------S-------SSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-----------C-------CccEEEEEEECCHHHH
Confidence 34555555565555555 9999999999975421 1 2389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEE
Q 009228 361 EKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 361 ekAv~~LN~~~~~~~glrV~l 381 (539)
++|++.||+..+.++.|+|.+
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEE
T ss_pred HHHHHHHCCCEECCEEEEEEE
Confidence 999999999988887777765
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.02 E-value=6.7e-10 Score=98.06 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=62.2
Q ss_pred ccceeEEEecCC--CCC--------CHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC
Q 009228 286 LQSRIVVAENLP--EDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 286 ~~~rTVyV~nLP--~d~--------t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe 355 (539)
+.+++|+++|+= .+. .+++|++.|++||.|..|.|.++. .+||+||+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~ 63 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCP 63 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECS
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEEC
Confidence 346788888873 221 245899999999999999995321 2789999999
Q ss_pred CHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009228 356 SVELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 356 t~E~AekAv~~LN~~~~~~~glrV~l~~ 383 (539)
+.++|++|++.||+..+.++.|+|.+..
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 9999999999999999888888888764
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2.9e-09 Score=95.25 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=62.4
Q ss_pred ccceeEEEecCCCC-CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC-HHHHHHH
Q 009228 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKA 363 (539)
Q Consensus 286 ~~~rTVyV~nLP~d-~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet-~E~AekA 363 (539)
...+.|||+||+.+ ++.++|+++|++||+|+.|.+..+ .-.|||+|++ .++|++|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----------------------~~tgfVrf~~~~~~A~~a 72 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----------------------AKEGIILFKEKAKEALGK 72 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----------------------CSEEEEEESSCHHHHHHH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCChHHHHHH
Confidence 35789999999999 999999999999999999999653 2259999999 8999999
Q ss_pred HHHHcCCC--CCCCceEEEEeee
Q 009228 364 IAELNDEG--NWRSGLRVRLMLR 384 (539)
Q Consensus 364 v~~LN~~~--~~~~glrV~l~~~ 384 (539)
|+.||+.. +.+.-++++++..
T Consensus 73 v~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 73 AKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp HHHTTTSCBCTTSSSEEEEECCH
T ss_pred HHHhhcCCcEEeCcEEEEEECCC
Confidence 99997543 3344566666654
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=6.7e-08 Score=82.24 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=58.7
Q ss_pred ceeEEEecCCC----CC-C---HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHH
Q 009228 288 SRIVVAENLPE----DH-C---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVEL 359 (539)
Q Consensus 288 ~rTVyV~nLP~----d~-t---~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~ 359 (539)
.-||+|.-++. +. . ..+|.+.|+.||+|..|||..+ .+||+|++.++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------------------------~~fVtF~d~~s 61 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------------------------KMWVTFLEGSS 61 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------------------------SEEEEESSHHH
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------------------------CEEEEECChHH
Confidence 34777776551 11 1 3679999999999999999643 28999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeeecCC
Q 009228 360 AEKAIAELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 360 AekAv~~LN~~~~~~~glrV~l~~~~~~ 387 (539)
|.+||+ ||+.++.++.|+|.+..+.-.
T Consensus 62 AlaAi~-mnG~~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 62 ALNVLS-LNGKELLNRTITIALKSPSGP 88 (91)
T ss_dssp HHHGGG-GTTCEETTEEEEEEECCCSSC
T ss_pred HHHHHh-cCCeEeCCeEEEEEeCCCCcc
Confidence 999999 999998888888888765443
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.45 E-value=3.4e-07 Score=87.89 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcCCCCCCCceEE
Q 009228 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (539)
Q Consensus 300 ~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~~~~~~~glrV 379 (539)
..+++|.+.|++||+|.+|.|+++...+. .....+|++||+|++.++|++|++.||+..+.++.|++
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~-------------~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSS-------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcc-------------cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 35679999999999999999986532211 01124899999999999999999999999998888888
Q ss_pred EEee
Q 009228 380 RLML 383 (539)
Q Consensus 380 ~l~~ 383 (539)
.+..
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8764
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=2.9e-07 Score=78.88 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=56.2
Q ss_pred ceeEEEecCCCC-----C-C---HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHH
Q 009228 288 SRIVVAENLPED-----H-C---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (539)
Q Consensus 288 ~rTVyV~nLP~d-----~-t---~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E 358 (539)
.-||+|.-++.+ . . ..+|.+.|+.||+|..|||..+ + +||+|++.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----------------------~--~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----------------------Q--MLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----------------------E--EEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----------------------c--EEEEEcChH
Confidence 458888877532 1 1 2579999999999999999643 2 999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEe
Q 009228 359 LAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 359 ~AekAv~~LN~~~~~~~glrV~l~ 382 (539)
+|.+||+ ||+.++.++.|+|.+.
T Consensus 70 sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 70 SALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHh-cCCeeeCCeEEEEecc
Confidence 9999999 9999988887777754
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00013 Score=64.10 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=62.0
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhc-----CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~f-----G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Ae 361 (539)
..|||-+-|||..++...|+.|.+.+ |.|+.|-++-+ -+-|+|||+++.+|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhH
Confidence 36899999999999999999999999 99999988633 334999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEE
Q 009228 362 KAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 362 kAv~~LN~~~~~~~glrV~l 381 (539)
||.-.|++.++.++.|++-.
T Consensus 77 KasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 77 KMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHSSEEETTEEEEEEC
T ss_pred HHHhhcCCeeecCeEEEecC
Confidence 99999999998766555543
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.59 E-value=0.011 Score=51.32 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=46.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhc-----CCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~f-----G~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~Aek 362 (539)
.++|.|+|||.++.++.|+-+|+.- |+|..|+... +.|+|+|.+.+.|++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------------------------~~AvItF~d~~va~r 62 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------------------------CGGVLTFREPADAER 62 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------------------------TEEEEEESSHHHHHH
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------------------------CcEEEEEcChHHHHH
Confidence 4699999999999999999999872 6899998731 359999999999999
Q ss_pred HHHH
Q 009228 363 AIAE 366 (539)
Q Consensus 363 Av~~ 366 (539)
.|+.
T Consensus 63 VL~k 66 (104)
T 2dhx_A 63 VLAQ 66 (104)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 9873
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.51 E-value=0.0056 Score=52.62 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=48.5
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
.+++ +||.+....||+++|+.||-|. |+.+.+ ..|||.|.+.+.|..|+..++.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD------------------------TsAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------------------------TSAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET------------------------TEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC------------------------CeEEEEecCHHHHHHHHHhccc
Confidence 4555 9999999999999999999653 444322 2699999999999999998752
Q ss_pred CCCCCCceEEEEee
Q 009228 370 EGNWRSGLRVRLML 383 (539)
Q Consensus 370 ~~~~~~glrV~l~~ 383 (539)
. ..++|+...
T Consensus 72 ~----~~y~i~ty~ 81 (100)
T 1whv_A 72 A----ESYRIQTYA 81 (100)
T ss_dssp C----CSSEEEEHH
T ss_pred C----CceEEEEhH
Confidence 2 235666554
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.05 E-value=0.0065 Score=52.77 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=58.6
Q ss_pred eeEEEecCCCCC-C----HHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHH
Q 009228 289 RIVVAENLPEDH-C----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 289 rTVyV~nLP~d~-t----~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekA 363 (539)
.||+|.||+.++ + .+.++++|..|+++.....+.- . + -..|.|.+.|+|.+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS----------F------------R-Rirv~F~~~~~A~~A 62 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS----------F------------K-RVRINFSNPLSAADA 62 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT----------T------------T-EEEEECSSTTHHHHH
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc----------c------------e-EEEEEeCChHHHHHH
Confidence 589999998765 2 2578999999999988877521 1 1 268999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009228 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~LN~~~~~~~glrV~l~~ 383 (539)
-.+|.+..+.+..++|.+..
T Consensus 63 R~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 63 RLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHTSTTSEETTEECEEECCC
T ss_pred HHHhccceecCceeEEEecC
Confidence 99999999888888888765
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.99 E-value=0.02 Score=48.42 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=52.7
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
..|+|++||..+|++++.+.++.+.++.....+.-+.+.+ .. .-.-|||.|.+.|++....+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-------------~~--~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-------------PH--MYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-------------TC--CCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-------------CC--cceEEEEEeCCHHHHHHHHHHhC
Confidence 3689999999999999999999998887777753321110 00 02349999999999999999998
Q ss_pred CCC
Q 009228 369 DEG 371 (539)
Q Consensus 369 ~~~ 371 (539)
+..
T Consensus 67 g~~ 69 (91)
T 1uw4_A 67 GYV 69 (91)
T ss_dssp TCE
T ss_pred CcE
Confidence 764
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.95 E-value=0.018 Score=51.14 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=50.5
Q ss_pred ccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHH
Q 009228 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~ 365 (539)
...+.|.|-||+.+. .+.|.+.|++||+|..... +. +..+..|.|++..+|++||.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~---------------------~~NWihI~Y~s~~~A~rAL~ 77 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN---------------------TGNWMHIRYQSKLQARKALS 77 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS---------------------SSSEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC---------------------CCCeEEEEeCCHHHHHHHHH
Confidence 356789999999884 6778889999999998876 21 14578999999999999999
Q ss_pred HHcCCCC
Q 009228 366 ELNDEGN 372 (539)
Q Consensus 366 ~LN~~~~ 372 (539)
.|+..+
T Consensus 78 -kNG~ii 83 (119)
T 1wwh_A 78 -KDGRIF 83 (119)
T ss_dssp -TTTCEE
T ss_pred -hCCeEe
Confidence 577664
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.70 E-value=0.012 Score=50.75 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=43.0
Q ss_pred EEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHc
Q 009228 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN 368 (539)
||+-+||.+....||+++|+.||-| .|+.+.+ ..|||.|.+.+.|..|+..++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fggv-~I~WidD------------------------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD------------------------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEEE-EEEEEET------------------------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCCE-EEEEEcC------------------------CeEEEEecCHHHHHHHHHhcc
Confidence 4444999999999999999999944 4444322 269999999999999999875
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.66 E-value=0.0055 Score=65.96 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=42.7
Q ss_pred hccceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHH
Q 009228 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 ~~~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv 364 (539)
+...|+|||. ++.+.++.+|.++|++||.|.++-+-.+ ...||.|||.+.+++.+++
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----------------------~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----------------------FGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----------------------SSEEEEEECC---CCHHHH
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----------------------CCeEEEEEeCCHHHHHHHH
Confidence 3456899998 7999999999999999999999988421 1458999999999998775
Q ss_pred H
Q 009228 365 A 365 (539)
Q Consensus 365 ~ 365 (539)
.
T Consensus 107 ~ 107 (464)
T 3pq1_A 107 N 107 (464)
T ss_dssp S
T ss_pred h
Confidence 3
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.42 E-value=0.042 Score=49.18 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.2
Q ss_pred ccceEEEEeCCHHHHHHHHHHHcCCC
Q 009228 346 NKLHAFVEYESVELAEKAIAELNDEG 371 (539)
Q Consensus 346 ~KG~AFVEFet~E~AekAv~~LN~~~ 371 (539)
.+||+||+|.+.++|++|++.+++..
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccC
Confidence 38999999999999999999988643
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.32 E-value=0.12 Score=44.38 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=46.6
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
+-.|+|+.||..+|++++.+.++.+=++.....+ +... . .+. .. -.-|||.|++.|+.....+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~G~~--------s-~~~---~~--~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-AADL--------S-LYP---HL--YSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-CCCS--------S-SCC---SC--CCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-CCcc--------C-CCC---Cc--ceEEEEEeCCHHHHHHHHHHc
Confidence 4479999999999999998888765444333322 1110 0 010 00 134999999999999999988
Q ss_pred cCCC
Q 009228 368 NDEG 371 (539)
Q Consensus 368 N~~~ 371 (539)
++..
T Consensus 74 ~g~~ 77 (97)
T 2l08_A 74 DGYI 77 (97)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 8643
No 221
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=92.15 E-value=0.027 Score=49.84 Aligned_cols=7 Identities=0% Similarity=0.093 Sum_probs=3.5
Q ss_pred EEEEeCC
Q 009228 350 AFVEYES 356 (539)
Q Consensus 350 AFVEFet 356 (539)
.||...+
T Consensus 66 ~~I~~pd 72 (119)
T 1b34_A 66 RYFILPD 72 (119)
T ss_dssp EEEECCT
T ss_pred EEEEecc
Confidence 4555544
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.07 E-value=0.13 Score=45.83 Aligned_cols=34 Identities=24% Similarity=0.086 Sum_probs=29.2
Q ss_pred cceEEEEeCCHHHHHHHHHHH-cCCCCCCCceEEEE
Q 009228 347 KLHAFVEYESVELAEKAIAEL-NDEGNWRSGLRVRL 381 (539)
Q Consensus 347 KG~AFVEFet~E~AekAv~~L-N~~~~~~~glrV~l 381 (539)
+|+++|||.+.++|++|++.| |+..+.+ .+++..
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~ 47 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDD 47 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEET
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccc
Confidence 899999999999999999999 9888766 555553
No 223
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.10 E-value=0.41 Score=43.09 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=48.3
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeE-EEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~-VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
...|.|-|||.+. ...+-+.|++||.|.. +.+.++.. .... +..+..+. ..|.+..+..|+|++..+|.+||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~-~~~~-~~~~~k~y--P~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQ-AMTV-GLQDRQFV--PIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-------------CC--CCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeecccccccc-cccc-cccccccc--CccCCCcEEEEEcCCHHHHHHHHH-
Confidence 3468888997765 4566778999999865 22211000 0000 00001111 223357789999999999999999
Q ss_pred HcCCCCCC
Q 009228 367 LNDEGNWR 374 (539)
Q Consensus 367 LN~~~~~~ 374 (539)
.|+..+.+
T Consensus 81 ~NG~ii~G 88 (132)
T 3p3d_A 81 ENGAVFNG 88 (132)
T ss_dssp TTTCEETT
T ss_pred hCCeEeCc
Confidence 68877544
No 224
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.89 E-value=1 Score=48.84 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=45.1
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~L 367 (539)
...++|+ |+..+...+|+++|+.||.| .|+.+. ..+|||.|.+.|.|+.+++.+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------------------------dt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------------------------SSEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------------------------CCeEEEEECCHHHHHHHHHHH
Confidence 4455665 99999999999999999965 444331 336999999999999999998
Q ss_pred cCC
Q 009228 368 NDE 370 (539)
Q Consensus 368 N~~ 370 (539)
+..
T Consensus 494 ~~~ 496 (507)
T 3d45_A 494 KYA 496 (507)
T ss_dssp TTC
T ss_pred HhC
Confidence 753
No 225
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=88.31 E-value=0.37 Score=55.59 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHhhhhhhccCCCcCCChHHHHh----hccC--CCCceecccccchh-hHHHhhcC------------HH
Q 009228 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRF----ILKD--PEGYVPISTVASFK-KIKAIISS------------HS 251 (539)
Q Consensus 191 ~~~s~e~~~kI~kQvEyYFSD~NL~~D~fL~~~----i~kd--~dGyVpI~~IasFk-KmK~Lt~d------------~~ 251 (539)
...++|....|+..|+|.|+|+-|.-..=|..+ +.++ -.|.||+++|+.+. |+..+.+- ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~ 180 (950)
T 3htx_A 101 DLTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAIS 180 (950)
T ss_dssp CCCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHH
T ss_pred CcchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHH
Confidence 345688899999999999999988766644443 3443 46899999999996 66666542 24
Q ss_pred HHHHhhhcCCceEEeecccccccCCCCcch
Q 009228 252 HLASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (539)
Q Consensus 252 ~V~~ALr~S~~LeVsedg~kVRR~~Pl~e~ 281 (539)
+|..|...+.-+.++... .|+|..|++..
T Consensus 181 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 181 YVMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 666666666555577766 99999998854
No 226
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=80.95 E-value=0.56 Score=39.88 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=0.0
Q ss_pred ccceeEEEecCCCCCCHHH
Q 009228 286 LQSRIVVAENLPEDHCHQN 304 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~ 304 (539)
....+|||+||+.++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999998764
No 227
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=66.43 E-value=8.7 Score=38.84 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCccc
Q 009228 147 HHHRHQNHHHNNNNSHHQ 164 (539)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~ 164 (539)
|||+||.--.+|+.+||+
T Consensus 5 ~~~~~~~~~~~~~~~~m~ 22 (315)
T 3na8_A 5 HHHHHHSSGLVPRGSHMS 22 (315)
T ss_dssp ------------------
T ss_pred ccccccccCcCCCchhcc
Confidence 444455667899999997
No 228
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=65.43 E-value=4.1 Score=40.57 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=20.1
Q ss_pred cCCCCCCChHHHHHHHhhhhhh--ccCCCc
Q 009228 187 DHQHGGLNDESIQKVLNQVEYY--FSDLNL 214 (539)
Q Consensus 187 ~~s~~~~s~e~~~kI~kQvEyY--FSD~NL 214 (539)
......++..++..+++-||-| ||..-+
T Consensus 30 g~~h~plspr~l~~~~k~ve~~g~~sPe~i 59 (262)
T 1d1d_A 30 GPAWTPLEPKLITRLADTVRTKGLRSPITM 59 (262)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHCTTSSHHH
T ss_pred CCcCCCCCHHHHHHHHHHHHHcCCCChHHH
Confidence 3578899999999999999766 355444
No 229
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=64.62 E-value=3 Score=39.53 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=33.7
Q ss_pred hccCCCCceecccccchhhHH--HhhcCHHHHHHhhhcCCc--eEEeecccccccC
Q 009228 224 ILKDPEGYVPISTVASFKKIK--AIISSHSHLASVLRKSSK--LVVSEDGKKIKRQ 275 (539)
Q Consensus 224 i~kd~dGyVpI~~IasFkKmK--~Lt~d~~~V~~ALr~S~~--LeVsedg~kVRR~ 275 (539)
+.+|++|||+|+.|+. -+.+ ....+.+.|.++++++.+ .+++. .+||-.
T Consensus 22 L~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~--~~IRA~ 74 (186)
T 1wfx_A 22 VRLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRN--GEIRAR 74 (186)
T ss_dssp CCCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEET--TEEEES
T ss_pred CccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeec--cEEEec
Confidence 4578899999999998 3333 233467788888877654 66664 467654
No 230
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=62.54 E-value=87 Score=28.31 Aligned_cols=49 Identities=2% Similarity=-0.019 Sum_probs=36.7
Q ss_pred CCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHHHcC
Q 009228 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 300 ~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~LN~ 369 (539)
...+++.+.+..+-+|..+..+. +. ..-++.|.+.+.++.++.++.|..
T Consensus 98 ~~~~~v~~~l~~~peV~~~~~vt--------------G~-------~d~l~~v~~~d~~~l~~~l~~l~~ 146 (171)
T 2e1c_A 98 GKYSEVASNLAKYPEIVEVYETT--------------GD-------YDMVVKIRTKNSEELNNFLDLIGS 146 (171)
T ss_dssp TCHHHHHHHHHTSTTEEEEEECS--------------SS-------SSEEEEEEESSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCcCeEEEEEee--------------CC-------CCEEEEEEECCHHHHHHHHHHHhc
Confidence 35678888899998888887642 11 134688999999999999876654
No 231
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=61.76 E-value=3.5 Score=26.76 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=13.9
Q ss_pred cCccCCCCCCCCCCCCC
Q 009228 37 FSRLNAKAPEFVPTRNP 53 (539)
Q Consensus 37 ~~~~~~~~p~~~p~~~~ 53 (539)
-|+|.+.||||+|+.=.
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 47899999999997643
No 232
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=58.16 E-value=2 Score=40.16 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=7.9
Q ss_pred Cceecccccc
Q 009228 230 GYVPISTVAS 239 (539)
Q Consensus 230 GyVpI~~Ias 239 (539)
|+|...-|..
T Consensus 74 G~I~~~E~~~ 83 (214)
T 2l4h_A 74 AQVPFEQILS 83 (214)
T ss_dssp SEECHHHHTT
T ss_pred CcCCHHHHHH
Confidence 9998777766
No 233
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=55.87 E-value=30 Score=25.99 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=43.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCCHHHHHHHHHH
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet~E~AekAv~~ 366 (539)
...++.|.|+.=..+...|++.+.+ --|..+.+-.. .+.+.|+|++.++..++|+.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----------------------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----------------------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----------------------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 3457889999888889999999999 88999988321 34578899866666677764
No 234
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=46.70 E-value=18 Score=37.37 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=19.1
Q ss_pred eeEEEecCCCCCCHHHHHHHhhh
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSA 311 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~ 311 (539)
...+|.|||+.++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 45799999999998878777764
No 235
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=43.18 E-value=80 Score=23.24 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=42.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC----CHHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE----SVELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe----t~E~AekAv 364 (539)
.++.|.|+.-..+...|++.+.+.--|..+.+-.. .+.+.|+|+ +.++..++|
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 60 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----------------------QNRADVVFDPNLVKEEDIKEEI 60 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 47888998877778899999999888888888321 345889996 466777777
Q ss_pred HHH
Q 009228 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
+.+
T Consensus 61 ~~~ 63 (74)
T 3dxs_X 61 EDA 63 (74)
T ss_dssp HHH
T ss_pred HHC
Confidence 754
No 236
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=41.95 E-value=15 Score=33.25 Aligned_cols=16 Identities=6% Similarity=-0.286 Sum_probs=12.2
Q ss_pred CCCCCHHHHHHHhhhc
Q 009228 297 PEDHCHQNLMKIFSAV 312 (539)
Q Consensus 297 P~d~t~e~L~e~Fs~f 312 (539)
-...+.++++++|..+
T Consensus 109 G~~~~~~~~~~l~~~~ 124 (174)
T 2i7a_A 109 GIFISRELLHLVTLRY 124 (174)
T ss_dssp TCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3457888899998775
No 237
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=40.53 E-value=1.3 Score=37.06 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=17.6
Q ss_pred ecCCCCCCHHHHHHHhhhcCC
Q 009228 294 ENLPEDHCHQNLMKIFSAVGS 314 (539)
Q Consensus 294 ~nLP~d~t~e~L~e~Fs~fG~ 314 (539)
++++.+.++++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 466677788999999999984
No 238
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=34.78 E-value=36 Score=33.91 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=16.1
Q ss_pred CHHHHHHHhhhcCC-eeEEEEeC
Q 009228 301 CHQNLMKIFSAVGS-VKTIRTCL 322 (539)
Q Consensus 301 t~e~L~e~Fs~fG~-V~~VrI~~ 322 (539)
..+.+++.|+++|- ..+|+++.
T Consensus 173 ~~~~ar~n~~~~gl~~~~I~li~ 195 (282)
T 2wk1_A 173 SEEEVRRNFRNYDLLDEQVRFLP 195 (282)
T ss_dssp CHHHHHHHHHHTTCCSTTEEEEE
T ss_pred HHHHHHHHHHHcCCCcCceEEEE
Confidence 45678999999985 26677653
No 239
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=34.52 E-value=22 Score=37.37 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=11.6
Q ss_pred CCCCCCChHHHHHHHhh
Q 009228 188 HQHGGLNDESIQKVLNQ 204 (539)
Q Consensus 188 ~s~~~~s~e~~~kI~kQ 204 (539)
-..-.++.+...+|+++
T Consensus 37 E~RValtP~~V~~L~~~ 53 (394)
T 2qrj_A 37 EARAALTPTTVKKLIAK 53 (394)
T ss_dssp CCCCSSCHHHHHHHHHT
T ss_pred CceeccCHHHHHHHHhC
Confidence 34556788888877754
No 240
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=33.03 E-value=97 Score=22.35 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=27.8
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEe
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~ 321 (539)
.++.|.|+.-..+...|++.+.+.--|..+.+-
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 36 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVN 36 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEE
Confidence 467889988777888999999998889988884
No 241
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=32.41 E-value=22 Score=23.38 Aligned_cols=19 Identities=47% Similarity=0.844 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCccccccCC
Q 009228 513 QPPGPRMPDGTRGFAMGRG 531 (539)
Q Consensus 513 ~ppgprmpdgtrgf~~grg 531 (539)
-|||||+-.|.-||--=-|
T Consensus 4 gppgprgqpgvmgfpgppg 22 (31)
T 4gyx_A 4 GPPGPRGQPGVMGFPGPPG 22 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCccccCCCCCC
Confidence 4678888888888864333
No 242
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=31.93 E-value=9.7 Score=39.20 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.2
Q ss_pred CHHHHHHHHHHH
Q 009228 356 SVELAEKAIAEL 367 (539)
Q Consensus 356 t~E~AekAv~~L 367 (539)
+.+..+..+..|
T Consensus 230 t~~~l~~i~~~i 241 (358)
T 2pk2_A 230 TLELLDELTHEF 241 (358)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 344444444433
No 243
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=31.88 E-value=30 Score=28.99 Aligned_cols=47 Identities=6% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCChHHHHHHHh-hhhhhccCCCcCCChHHHHhhccCCCCceecccccch
Q 009228 192 GLNDESIQKVLN-QVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240 (539)
Q Consensus 192 ~~s~e~~~kI~k-QvEyYFSD~NL~~D~fL~~~i~kd~dGyVpI~~IasF 240 (539)
.++.+.+..+++ .+..+..+... -+. |++.+..+.+|.|.+.-++.+
T Consensus 40 ~Is~~EL~~~l~~~lg~~~~~~~e-v~~-li~~~D~d~dG~Idf~EF~~~ 87 (106)
T 2h2k_A 40 SLSVNEFKELVTQQLPHLLKDVGS-LDE-KMKSLDVNQDSELKFNEYWRL 87 (106)
T ss_dssp EECHHHHHHHHHHHCTTTTTTCCC-HHH-HHHHHCTTCSSSEEHHHHHHH
T ss_pred EECHHHHHHHHHHHcCcCCCCHHH-HHH-HHHHHCCCCCCCCcHHHHHHH
Confidence 455555555554 35433332111 123 445567788999887665443
No 244
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=30.76 E-value=10 Score=38.09 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=6.6
Q ss_pred CCCcccccccccCCCCCCC
Q 009228 176 VPGVKDKKEKKDHQHGGLN 194 (539)
Q Consensus 176 ~~~~f~~~~~~~~s~~~~s 194 (539)
+.++.+++++ .+..+-
T Consensus 45 i~~aKVIAIa---GKGGVG 60 (314)
T 3fwy_A 45 ITGAKVFAVY---GKGGIG 60 (314)
T ss_dssp --CCEEEEEE---CSTTSS
T ss_pred CCCceEEEEE---CCCccC
Confidence 3344444443 455553
No 245
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=30.57 E-value=9.1 Score=41.86 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=8.8
Q ss_pred EeCCHHHHHHHHHHH
Q 009228 353 EYESVELAEKAIAEL 367 (539)
Q Consensus 353 EFet~E~AekAv~~L 367 (539)
=|||.++-.+|-+-|
T Consensus 186 LFETieDL~~a~~Il 200 (560)
T 3odm_A 186 LVEDVPALANIDRIL 200 (560)
T ss_dssp EECCHHHHHTTHHHH
T ss_pred CcCCHHHHHhhHHHH
Confidence 466666666555533
No 246
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=27.04 E-value=13 Score=35.37 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=0.0
Q ss_pred cCCccCcccccc
Q 009228 129 NYHHQQHQQHQH 140 (539)
Q Consensus 129 ~~h~~~h~~~~~ 140 (539)
+||||+||||||
T Consensus 3 ~~~~~~~~~~~~ 14 (283)
T 2yln_A 3 HHHHHHHHHHSS 14 (283)
T ss_dssp ------------
T ss_pred cccccccccccc
No 247
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=26.09 E-value=12 Score=34.59 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=12.8
Q ss_pred HHHhhhhhhccCCC-c-CCChHHHHhhc
Q 009228 200 KVLNQVEYYFSDLN-L-ATTDHLIRFIL 225 (539)
Q Consensus 200 kI~kQvEyYFSD~N-L-~~D~fL~~~i~ 225 (539)
.++-=|-+|||+.- + .++..|...++
T Consensus 60 F~RyFLs~YfS~~~~~~~~q~~LkdFvS 87 (161)
T 4ec6_A 60 FGRYFLTYYFSQEKNQENYQSSLRTYVS 87 (161)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHGGGBC
T ss_pred eehhhhHHHhCCChhhhhHHHHHHHHhh
Confidence 33444567887542 2 23445555443
No 248
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=26.07 E-value=38 Score=33.74 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCCccccccccccccCcCCCcccccccccCCCCCCChHHHHHHHhhhhhh
Q 009228 147 HHHRHQNHHHNNNNSHHQNNQYEDQQEGEVPGVKDKKEKKDHQHGGLNDESIQKVLNQVEYY 208 (539)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~s~~~~s~e~~~kI~kQvEyY 208 (539)
|||+||.--.+|--+||- .|.-.-|+...+.+. ...-+.....+++.+++..+++.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~a~~~~~~~l~~~a~~~l~~~ 61 (305)
T 3e4o_A 5 HHHHHHSSGLVPRGSHMA--SMTGGEEMGRGSLLL---ARDYGRSQALAGLAGQSRIDASLK 61 (305)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHH
T ss_pred ccccccccCcccCccccc--ccccchhhcccchHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556788888876 222222333333221 222233445556666666666555
No 249
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=25.92 E-value=1.1e+02 Score=25.07 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=18.6
Q ss_pred cceEEEEeCCHHHHHHHHHHHc
Q 009228 347 KLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 347 KG~AFVEFet~E~AekAv~~LN 368 (539)
+||.||+++..++...+|+.+.
T Consensus 50 PGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 50 KGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp TTEEEEEESSHHHHHHHHTTCT
T ss_pred CCEEEEEEecchhHHHHHHCCC
Confidence 8999999999998888877543
No 250
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.89 E-value=1.7e+02 Score=27.12 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=37.6
Q ss_pred ceeEEEecCCCC---------CCHHHHHHHh--hhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC
Q 009228 288 SRIVVAENLPED---------HCHQNLMKIF--SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 288 ~rTVyV~nLP~d---------~t~e~L~e~F--s~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet 356 (539)
..+++|-|++.. .+..+|++.| +.|..++..-+.-++ +..|+|.|+|..
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~--------------------Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYL--------------------GHSGTAIVEFNK 71 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSS--------------------BEEEEEEEECCS
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCC--------------------CCceeEEEEecC
Confidence 347888888862 3446899977 999987754443211 247899999996
Q ss_pred -HHHHHHHHH
Q 009228 357 -VELAEKAIA 365 (539)
Q Consensus 357 -~E~AekAv~ 365 (539)
..-...|++
T Consensus 72 dw~Gf~~A~~ 81 (172)
T 4e8u_A 72 DWNGLHNGLL 81 (172)
T ss_dssp SHHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 333333433
No 251
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=25.49 E-value=1.7e+02 Score=20.15 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=37.7
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeC---CHHHHHHHHHH
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE---SVELAEKAIAE 366 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFe---t~E~AekAv~~ 366 (539)
++.|.|+.-......|++.+...--|..+.+-.. .+.+.|+|+ +.++..++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE-----------------------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT-----------------------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC-----------------------CCEEEEEECCCCCHHHHHHHHHH
Confidence 4567777666677889999998877888888422 334778886 34555666664
Q ss_pred H
Q 009228 367 L 367 (539)
Q Consensus 367 L 367 (539)
+
T Consensus 61 ~ 61 (66)
T 1yg0_A 61 A 61 (66)
T ss_dssp H
T ss_pred c
Confidence 4
No 252
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=25.16 E-value=70 Score=31.93 Aligned_cols=26 Identities=4% Similarity=0.100 Sum_probs=20.1
Q ss_pred cceeEEEecCCCCCCHHHHHHHhhhc
Q 009228 287 QSRIVVAENLPEDHCHQNLMKIFSAV 312 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~f 312 (539)
..++|.|..=-..+|.++|.+.|..+
T Consensus 128 ~~~tLtI~DNGiGMTkeeL~~~LgtI 153 (272)
T 3ied_A 128 EKKTLTITDNGIGMDKSELINNLGTI 153 (272)
T ss_dssp TTTEEEEEECSCCCCHHHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45688888766788999999887554
No 253
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=24.20 E-value=16 Score=34.85 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=5.5
Q ss_pred hhccceeEEE
Q 009228 284 EELQSRIVVA 293 (539)
Q Consensus 284 ~~~~~rTVyV 293 (539)
+++..++|-|
T Consensus 160 ~dL~gk~v~~ 169 (291)
T 2yjp_A 160 AQLKDQTLLV 169 (291)
T ss_dssp GGGTTSEEEE
T ss_pred HHhCCCEEEE
Confidence 4455566654
No 254
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=24.12 E-value=33 Score=30.91 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=13.9
Q ss_pred CCCCCChHHHHHHHhhhh
Q 009228 189 QHGGLNDESIQKVLNQVE 206 (539)
Q Consensus 189 s~~~~s~e~~~kI~kQvE 206 (539)
....+|+...++|++.++
T Consensus 39 m~ItiTe~Aa~~lk~ll~ 56 (145)
T 2d2a_A 39 QGLTLTPAAAIHIRELVA 56 (145)
T ss_dssp CCCEECHHHHHHHHHHHH
T ss_pred ceEEECHHHHHHHHHHHh
Confidence 446788988888887766
No 255
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=22.94 E-value=18 Score=37.48 Aligned_cols=10 Identities=60% Similarity=1.245 Sum_probs=0.0
Q ss_pred CCccCccccccc
Q 009228 130 YHHQQHQQHQHH 141 (539)
Q Consensus 130 ~h~~~h~~~~~~ 141 (539)
||| ||||+||
T Consensus 3 ~~~--~~~~~~~ 12 (357)
T 4g1u_A 3 HHH--HHHHHHH 12 (357)
T ss_dssp ------------
T ss_pred Ccc--ccccccc
No 256
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=22.68 E-value=2e+02 Score=20.15 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=26.2
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEe
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~ 321 (539)
.++.|.|+.-..+...|++.+...--|..+.+-
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 39 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQ 39 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEE
Confidence 467888887666677899999988778888884
No 257
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=22.14 E-value=19 Score=36.49 Aligned_cols=10 Identities=60% Similarity=1.245 Sum_probs=0.0
Q ss_pred CCccCccccccc
Q 009228 130 YHHQQHQQHQHH 141 (539)
Q Consensus 130 ~h~~~h~~~~~~ 141 (539)
||| ||||+||
T Consensus 3 ~~~--~~~~~~~ 12 (406)
T 1ydx_A 3 HHH--HHHHHHH 12 (406)
T ss_dssp ------------
T ss_pred ccc--ccccccc
No 258
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=21.42 E-value=20 Score=35.96 Aligned_cols=10 Identities=60% Similarity=1.245 Sum_probs=0.0
Q ss_pred CCccCccccccc
Q 009228 130 YHHQQHQQHQHH 141 (539)
Q Consensus 130 ~h~~~h~~~~~~ 141 (539)
||| ||||+||
T Consensus 3 ~~~--~~~~~~~ 12 (379)
T 3uau_A 3 HHH--HHHHHHH 12 (379)
T ss_dssp ------------
T ss_pred ccc--ccccccc
No 259
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=21.41 E-value=20 Score=36.72 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=9.3
Q ss_pred eCCHHHHHHHHHHHcC
Q 009228 354 YESVELAEKAIAELND 369 (539)
Q Consensus 354 Fet~E~AekAv~~LN~ 369 (539)
|-+.+.+-.+|..+-+
T Consensus 229 vid~D~~Aa~lA~~l~ 244 (332)
T 4axs_A 229 VIDKDFALAKIADAVN 244 (332)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred eechHHHHHHHHHHhC
Confidence 3466666666665543
No 260
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=21.19 E-value=2.4e+02 Score=20.43 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=41.7
Q ss_pred ceeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC----HHHHHHH
Q 009228 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VELAEKA 363 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet----~E~AekA 363 (539)
..++.|.++.-..+...|++.+...--|..+.+-.. .+.+.|+|+. .++..++
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~ 65 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-----------------------EKNATIIYDPKLQTPKTLQEA 65 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------CCEEEEEECCCCCCHHHHHHH
Confidence 457888999888888999999999877888877321 3457888864 4556666
Q ss_pred HHHH
Q 009228 364 IAEL 367 (539)
Q Consensus 364 v~~L 367 (539)
|+.+
T Consensus 66 i~~~ 69 (79)
T 1kvi_A 66 IDDM 69 (79)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 6654
No 261
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=20.97 E-value=2.2e+02 Score=19.84 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=26.3
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEe
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~ 321 (539)
.++.|.|+.-..+...|++.+...--|..+.+-
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 37 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVN 37 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEE
Confidence 357788887666678899999998888888884
No 262
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=20.95 E-value=2.7e+02 Score=20.84 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=40.8
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC----HHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet----~E~AekAv 364 (539)
.++.|.++.-..+...|++.+...--|..+.+-.. .+.+.|+|+. .++..++|
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 67 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD-----------------------NQEATIVYQPHLISVEEMKKQI 67 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST-----------------------TTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 46788898877888899999999888998888321 3357888863 45556666
Q ss_pred HHH
Q 009228 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
+.+
T Consensus 68 ~~~ 70 (84)
T 1q8l_A 68 EAM 70 (84)
T ss_dssp HHT
T ss_pred HHc
Confidence 643
No 263
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=20.87 E-value=21 Score=36.14 Aligned_cols=6 Identities=50% Similarity=0.911 Sum_probs=2.5
Q ss_pred CCeeEE
Q 009228 313 GSVKTI 318 (539)
Q Consensus 313 G~V~~V 318 (539)
|.|.+|
T Consensus 359 gsvasv 364 (564)
T 4faj_A 359 GSVASV 364 (564)
T ss_dssp SCEECS
T ss_pred Cceeee
Confidence 444443
No 264
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=20.74 E-value=21 Score=37.05 Aligned_cols=12 Identities=0% Similarity=0.075 Sum_probs=5.9
Q ss_pred hHHHHHHHhhhh
Q 009228 195 DESIQKVLNQVE 206 (539)
Q Consensus 195 ~e~~~kI~kQvE 206 (539)
.+.+++.++.||
T Consensus 60 ~~~~~~~~~~L~ 71 (371)
T 3tla_A 60 KNRFFRGVEFLQ 71 (371)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555554
No 265
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=20.69 E-value=21 Score=36.61 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=7.8
Q ss_pred HHHhhhhhhccC
Q 009228 200 KVLNQVEYYFSD 211 (539)
Q Consensus 200 kI~kQvEyYFSD 211 (539)
.|+.-++||+|-
T Consensus 84 ~lR~~FDYfLs~ 95 (332)
T 2es4_D 84 AVREFFDYCLTA 95 (332)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 466667777773
No 266
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=20.68 E-value=14 Score=32.45 Aligned_cols=11 Identities=9% Similarity=0.350 Sum_probs=5.4
Q ss_pred CCceecccccc
Q 009228 229 EGYVPISTVAS 239 (539)
Q Consensus 229 dGyVpI~~Ias 239 (539)
+|+|..+.+..
T Consensus 46 dG~Isg~elr~ 56 (121)
T 3fia_A 46 SGFITGDQARN 56 (121)
T ss_dssp TTBEEHHHHHH
T ss_pred CCeECHHHHHH
Confidence 45555544444
No 267
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=20.42 E-value=2.2e+02 Score=19.63 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=26.3
Q ss_pred eEEEecCCCCCCHHHHHHHhhhcCCeeEEEEe
Q 009228 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~ 321 (539)
++.|.|+.-..+...|++.+.+.--|..+.+-
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 34 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQ 34 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEE
Confidence 57788887777788899999998778888884
No 268
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=20.35 E-value=21 Score=39.19 Aligned_cols=7 Identities=29% Similarity=0.838 Sum_probs=2.4
Q ss_pred ccCCCCC
Q 009228 39 RLNAKAP 45 (539)
Q Consensus 39 ~~~~~~p 45 (539)
|+||--|
T Consensus 448 Ri~aedp 454 (587)
T 3jrx_A 448 RITSENP 454 (587)
T ss_dssp EEEC---
T ss_pred eecccCc
Confidence 5666555
No 269
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=20.07 E-value=2.3e+02 Score=19.81 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=39.5
Q ss_pred eeEEEecCCCCCCHHHHHHHhhhcCCeeEEEEeCCCCCCCCCCCCCccccccCcccCccceEEEEeCC----HHHHHHHH
Q 009228 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~fG~V~~VrI~~p~~~~~~~P~~~R~~K~~g~~~~~KG~AFVEFet----~E~AekAv 364 (539)
.++.|.|+.-..+...|++.+...--|..+.+-.. .+.+.|+|+. .++..++|
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 61 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE-----------------------TRQAVVTFDDAKTSVQKLTKAT 61 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT-----------------------TTEEEEEEETTTCCHHHHHHHH
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 35677888777778889999999888888888431 3357788863 45556666
Q ss_pred HHH
Q 009228 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
+.+
T Consensus 62 ~~~ 64 (72)
T 1osd_A 62 ADA 64 (72)
T ss_dssp HHT
T ss_pred Hhc
Confidence 543
Done!