BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009229
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 362 QVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEM 416
V R F S ++G + ++++V + + LE+ F D+DGNG I++NE+
Sbjct: 75 HVFRSFDSNLDGTLDFKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEV 129
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 372 EGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFY 420
+G + YE+ F+ + +E L+ FK ID DGNG I +NE FY
Sbjct: 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 372 EGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFY 420
+G + YE+ F+ + +E L+ FK ID DGNG I +NE FY
Sbjct: 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 372 EGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFY 420
+G + YE+ F+ + +E L+ FK ID DGNG I +NE FY
Sbjct: 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 362 QVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYE 421
V R F + +G + ++++V + + LE+ F D+DGNG I++NE+
Sbjct: 67 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL---- 122
Query: 422 EQLHRMECMAQEPVLFEDILCQIIDMIGPENQSYI 456
+I+ I MI PE+ ++
Sbjct: 123 -----------------EIVTAIFKMISPEDTKHL 140
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 362 QVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYE 421
V R F + +G + ++++V + + LE+ F D+DGNG I++NE+
Sbjct: 67 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL---- 122
Query: 422 EQLHRMECMAQEPVLFEDILCQIIDMIGPENQSYI 456
+I+ I MI PE+ ++
Sbjct: 123 -----------------EIVTAIFKMISPEDTKHL 140
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 362 QVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYE 421
V R F + +G + ++++V + + LE+ F D+DGNG I++NE+
Sbjct: 68 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL---- 123
Query: 422 EQLHRMECMAQEPVLFEDILCQIIDMIGPENQSYI 456
+I+ I MI PE+ ++
Sbjct: 124 -----------------EIVTAIFKMISPEDTKHL 141
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 21/95 (22%)
Query: 362 QVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYE 421
V R F + +G + ++++V + + LE+ F D+DGNG I++NE+
Sbjct: 67 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL---- 122
Query: 422 EQLHRMECMAQEPVLFEDILCQIIDMIGPENQSYI 456
+I+ I MI PE+ ++
Sbjct: 123 -----------------EIVTAIFKMISPEDTKHL 140
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 21/95 (22%)
Query: 362 QVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYE 421
V R F + +G + ++ +V + + LE+ F D+DGNG I++NE+
Sbjct: 67 HVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL---- 122
Query: 422 EQLHRMECMAQEPVLFEDILCQIIDMIGPENQSYI 456
+I+ I MI PE+ ++
Sbjct: 123 -----------------EIVTAIFKMISPEDTKHL 140
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 21/95 (22%)
Query: 362 QVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYE 421
V R F + +G + ++ +V + + LE+ F D+DGNG I++NE+
Sbjct: 67 HVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEVL---- 122
Query: 422 EQLHRMECMAQEPVLFEDILCQIIDMIGPENQSYI 456
+I+ I MI PE+ ++
Sbjct: 123 -----------------EIVTAIFKMISPEDTKHL 140
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 346 YGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDL 405
YGN Y + V R F + +G + + +F+ + E L++ F DL
Sbjct: 52 YGNF-FPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDL 110
Query: 406 DGNGVITRNEM 416
DGNG I++ EM
Sbjct: 111 DGNGYISKAEM 121
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 365 RKFTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFF 419
++ + +G + YE+ F+ S+ +E L+ FK ID+DGNG I E F
Sbjct: 7 KQLDANGDGSVSYEEVKAFVSSKRPIKNEQLLQLIFKAIDIDGNGEIDLAEFTKF 61
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 374 KMGYEDFVYFILSEE---DKSSEPSLEYWFKCIDLDGNGVITRNEM 416
K G+ DF+ FI + + E L+++FK D DGNG I +NE+
Sbjct: 70 KDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNEL 115
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVYFILS 386
F LD D+ + + ++ G + Y+ + QV R S G++ Y DF+ +
Sbjct: 63 FIALDVDNSGTLSSQEILD-GLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATID 121
Query: 387 EEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFY 420
++ + FK D+DGNG I+ E++ +
Sbjct: 122 KQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIF 155
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 237 DFKPVLRELLATHPG----LEFLQSTPEFQERYAETVIYRIFYYINRSGNGHLSLRELKR 292
D VLR++ + G +FL +T + Q + V F + + GNG +S+ ELKR
Sbjct: 94 DIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKR 153
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 367 FTSKVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEM 416
F +G++ + +F+ + + + L + FK DLD +G ITRNEM
Sbjct: 72 FDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEM 121
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 179 PSFFSTALFRKIDVNNTGLVTRDAFVDYWVNGSMLTMDTATQ-IFSILNQPDLKYLTQE- 236
P+ F+T +F D N G + F+ S T+D + F + + + Y+T+
Sbjct: 61 PTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNE 120
Query: 237 --DFKPVLRELLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSGNGHLSLRELKRGN 294
D + +++ L ++TPE + + RIF ++++ +G L+L+E + G+
Sbjct: 121 MLDIVDAIYQMVGNTVELPEEENTPEKR-------VDRIFAMMDKNADGKLTLQEFQEGS 173
Query: 295 LID 297
D
Sbjct: 174 KAD 176
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 383 FILSEEDKSSEPSLEYWF-----KCIDLDGN--GVITRNEMQFFYEEQLHRMECMAQE-P 434
+ILS ++ S P L K I L+G G+IT N F ++ R+E + P
Sbjct: 123 YILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNN---FGSARVKRLEVKERLLP 179
Query: 435 VLFEDILCQIIDMIGPENQSYITLRDLKGCKLSGSVF------NILFNLNKFMAFETRDP 488
+L E I+ + IG + YIT G S ++ +I+ T DP
Sbjct: 180 LLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDP 239
Query: 489 FLIRQERENPTLT 501
L+ R P L+
Sbjct: 240 RLVPTARRIPKLS 252
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 383 FILSEEDKSSEPSLEYWF-----KCIDLDGN--GVITRNEMQFFYEEQLHRMECMAQE-P 434
+ILS ++ S P L K I L+G G+IT N F ++ R+E + P
Sbjct: 124 YILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNN---FGSARVKRLEVKERLLP 180
Query: 435 VLFEDILCQIIDMIGPENQSYITLRDLKGCKLSGSVF------NILFNLNKFMAFETRDP 488
+L E I+ + IG + YIT G S ++ +I+ T DP
Sbjct: 181 LLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDP 240
Query: 489 FLIRQERENPTLT 501
L+ R P L+
Sbjct: 241 RLVPTARRIPKLS 253
>pdb|2VRG|A Chain A, Structure Of Human Mcfd2
Length = 124
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 398 YWFKCIDLDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMI 448
++FK D DGN ++ E+ +H+ E Q P++ ED L IID +
Sbjct: 53 HYFKMHDYDGNNLLDGLELSTAIT-HVHKEEGSEQAPLMSEDELINIIDGV 102
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 17/105 (16%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKM----------- 375
F +LDT++D ++D++ L+R + + + VD + + + S +E ++
Sbjct: 337 FRKLDTNNDGMLDRDELVRGYHEFMRLKGVDS--NSLIQNEGSTIEDQIDSLMPLLDMDG 394
Query: 376 -GYEDFVYFILSEEDKS---SEPSLEYWFKCIDLDGNGVITRNEM 416
G ++ FI S D++ S +E FK D DG+G I+ E+
Sbjct: 395 SGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKEL 439
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 184 TALFRKIDVNNTGLVTRDAFVDYWVNGSMLTMDTATQIFSILNQPDLKYLTQEDFKPVLR 243
T +FRK+D NN G++ RD V + F L D L Q + +
Sbjct: 334 TEIFRKLDTNNDGMLDRDELVRGY------------HEFMRLKGVDSNSLIQNEGSTIED 381
Query: 244 ELLATHPGLEFLQS-TPEFQERYAETV----------IYRIFYYINRSGNGHLSLREL 290
++ + P L+ S + E+ E A + + R F ++ G+G +S +EL
Sbjct: 382 QIDSLMPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSGKISTKEL 439
>pdb|3LCP|C Chain C, Crystal Structure Of The Carbohydrate Recognition Domain
Of Complex With Mcfd2
pdb|3LCP|D Chain D, Crystal Structure Of The Carbohydrate Recognition Domain
Of Complex With Mcfd2
Length = 93
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 398 YWFKCIDLDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMI 448
++FK D DGN ++ E+ +H+ E Q P++ ED L IID +
Sbjct: 22 HYFKMHDYDGNNLLDGLELSTAIT-HVHKEEGSEQAPLMSEDELINIIDGV 71
>pdb|3A4U|B Chain B, Crystal Structure Of Mcfd2 In Complex With Carbohydrate
Recognition Domain Of Ergic-53
Length = 143
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 398 YWFKCIDLDGNGVITRNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMI 448
++FK D DGN ++ E+ +H+ E Q P++ ED L IID +
Sbjct: 72 HYFKMHDYDGNNLLDGLELSTAIT-HVHKEEGSEQAPLMSEDELINIIDGV 121
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVYFILS 386
F +LD D +D + R G L + V RK+ G + E+F+ +
Sbjct: 43 FRQLDRDGSRSLDADEF-RQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRP 101
Query: 387 EEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYEEQLH 425
++ E + F +D G+GV+T ++++ Y + H
Sbjct: 102 PMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAH 140
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 186 LFRKIDVNNTGLVTRDAFVDYWVN-GSMLTMDTATQIFSILNQPDLKYLTQEDFKPVLRE 244
LF+ ID +N+G +T D D GS L ++I +++ D+ D+
Sbjct: 15 LFKMIDTDNSGTITFDELKDGLKRVGSELM---ESEIKDLMDAADIDKSGTIDYG----- 66
Query: 245 LLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSGNGHLSLRELKR 292
EF+ +T + E + F Y ++ G+G+++L E+++
Sbjct: 67 --------EFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQ 106
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 277 INRSGNGHLSLRELKRGNLIDAMQHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDF 336
I+R GNG + E G + M+ D EE+I + R F D D +
Sbjct: 55 IDRDGNGTVDFPEF-LGMMARKMKDTDNEEEIREAFRVF---------------DKDGNG 98
Query: 337 LIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVYFILSE 387
+ L R+ L ++ D ++ R + +G++ YE+FV ++S+
Sbjct: 99 FVSAAEL-RHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFVRVLVSK 148
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 65/142 (45%), Gaps = 27/142 (19%)
Query: 270 IYRIFYYINRSGNGHLSLRELK---------RGNLIDAMQHADEEEDINKVLRYFSYE-H 319
+ +IF ++ +G+G L +EL +G+ + + + E +++ +L+ ++ +
Sbjct: 42 LTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRN 101
Query: 320 FYVIYCKFWELDTDHDFLIDKENLIRY-------GNHALTYRIVDRIFS----------Q 362
Y+ Y +F + D L+ +E L+ G+ +T + R+F Q
Sbjct: 102 GYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQ 161
Query: 363 VPRKFTSKVEGKMGYEDFVYFI 384
V ++ +G++ +E+FV +
Sbjct: 162 VLQECDKNNDGEVDFEEFVEMM 183
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 374 KMGYEDFVYFILSEE---DKSSEPSLEYWFKCIDLDGNGVITRNEM 416
K GY DF+ ++ + + L ++FK D+DGNG I R E+
Sbjct: 65 KDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGEL 110
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFV 381
F D D+ +IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 77 FRTYDRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 130
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFV 381
F D D+ +IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 80 FRTYDRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 133
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFV 381
F D D+ +IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 76 FRTYDRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 129
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALT-YRIVDRIFSQVPRKFTSKVEGKMGYEDFV 381
F D D+ +IDK L AL+ YR+ D+ + RKF + G++ ++DF+
Sbjct: 77 FRTYDRDNSGMIDKNEL----KQALSGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 128
>pdb|1EMR|A Chain A, Crystal Structure Of Human Leukemia Inhibitory Factor
(Lif)
Length = 159
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 116 SPLKVVSEPAKELIPQFYFQNGRPLPNELKEQCLFRINQFFYGHSDGLQIQEFKLVTKEI 175
S L ++ A L +Y G P PN L++ C + F H++G ++ KLV E+
Sbjct: 7 SQLAQLNGSANALFILYYTAQGEPFPNNLEKLCGPNVTDFPPFHANG--TEKAKLV--EL 62
Query: 176 CKLPSFFSTALFRKIDVNNTGLVTRDAFVDYWVNGSMLTMDT 217
++ + T+L G +TRD + +N S L++ +
Sbjct: 63 YRIVVYLGTSL---------GNITRDQKI---LNPSALSLHS 92
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFV 381
F D D+ +IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 80 FRTYDRDNSGMIDK-NELKQALSGAGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 133
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 327 FWELDTDHDFLIDKENLI----RYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVY 382
F +D + D +D++ LI + + + +I S+V + + GY D+
Sbjct: 69 FRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSE 128
Query: 383 FILSEEDKSS---EPSLEYWFKCIDLDGNGVITRNEM 416
F+ D+ S + LE F+ D DGNG I+ +E+
Sbjct: 129 FVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 165
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 319 HFYVIYCK--FWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMG 376
H +++ + F + D+ D +D N +R + Y++ ++ F + RKF + G +G
Sbjct: 89 HHFILSMREGFRKRDSSGDGRLDS-NEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLG 147
Query: 377 YEDFV 381
++D+V
Sbjct: 148 FDDYV 152
>pdb|1PVH|B Chain B, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|D Chain D, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 169
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 116 SPLKVVSEPAKELIPQFYFQNGRPLPNELKEQCLFRINQFFYGHSDGLQIQEFKLVTKEI 175
S L ++ A L +Y G P PN L + C + F H++G ++ KLV E+
Sbjct: 17 SQLAQLNGSANALFILYYTAQGEPFPNNLDKLCGPNVTDFPPFHANG--TEKAKLV--EL 72
Query: 176 CKLPSFFSTALFRKIDVNNTGLVTRDAFVDYWVNGSMLTMDT 217
++ + T+L G +TRD + +N S L++ +
Sbjct: 73 YRIVVYLGTSL---------GNITRDQKI---LNPSALSLHS 102
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 318 EHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGY 377
E F IY +F+ + DF NH T F G + +
Sbjct: 46 EDFVKIYKQFFPFGSPEDF----------ANHLFTV-------------FDKDNNGFIHF 82
Query: 378 EDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITRNEMQFFYEEQLHRMECMA---QEP 434
E+F+ + + + E L + F+ DL+ +G IT +EM M M ++
Sbjct: 83 EEFITVLSTTSRGTLEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDE 142
Query: 435 VLFEDILCQIIDMIGPENQSYITLRDLK-GCKLSGSVFNIL 474
E + +I ++ YITL + + G K+ S+ L
Sbjct: 143 ATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGAL 183
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 64/139 (46%), Gaps = 27/139 (19%)
Query: 270 IYRIFYYINRSGNGHLSLRELK---------RGNLIDAMQHADEEEDINKVLRYFSYE-H 319
+ +IF ++ +G+G L +EL +G+ + + + E +++ +L+ ++ +
Sbjct: 316 LTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRN 375
Query: 320 FYVIYCKFWELDTDHDFLIDKENLIRY-------GNHALTYRIVDRIFS----------Q 362
Y+ Y +F + D L+ +E L+ G+ +T + R+F Q
Sbjct: 376 GYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQ 435
Query: 363 VPRKFTSKVEGKMGYEDFV 381
V ++ +G++ +E+FV
Sbjct: 436 VLQECDKNNDGEVDFEEFV 454
>pdb|1HQV|A Chain A, Structure Of Apoptosis-Linked Protein Alg-2
Length = 191
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 331 DTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFV 381
D D+ +IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 103 DRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 152
>pdb|2ZN8|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Alg-2
Length = 190
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 331 DTDHDFLIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFV 381
D D+ +IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 102 DRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 151
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 327 FWELDTDHDFLIDKENLI----RYGNHALTYRIVDRIFSQVPRKFTSKVEGKMGYEDFVY 382
F +D + D +D++ LI + + + +I S+V + + GY D+
Sbjct: 352 FRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSE 411
Query: 383 FILSEEDKSS---EPSLEYWFKCIDLDGNGVITRNEM 416
F+ D+ S + LE F+ D DGNG I+ +E+
Sbjct: 412 FVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 448
>pdb|1EK9|A Chain A, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|B Chain B, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
pdb|1EK9|C Chain C, 2.1a X-Ray Structure Of Tolc: An Integral Outer Membrane
Protein And Efflux Pump Component From Escherichia Coli
Length = 428
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 180 SFFSTALFRKIDVNNTGLVTRDAFVDYWVNGSMLTMDTATQIFSILNQPDLKYLTQEDFK 239
S F + +R + + +D V Y + L ++TAT F++LN D+ TQ +
Sbjct: 74 SIFDXSKWRALTLQEKAAGIQD--VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKE 131
Query: 240 PVLREL 245
+ R+L
Sbjct: 132 AIYRQL 137
>pdb|2Q7N|B Chain B, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
pdb|2Q7N|D Chain D, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Lif Receptor (Domains 1-5)
Length = 180
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 92 PLSPRSTSGSPRVMKQRAGPSNLGSPLKVVSEPAKELIPQFYFQNGRPLPNELKEQCLFR 151
P++P + + + R + + S L ++ A L +Y G P PN L + C
Sbjct: 4 PITPVNATCAIRHPCHNNLMNQIRSQLAQLNGSANALFILYYTAQGEPFPNNLDKLCGPN 63
Query: 152 INQFFYGHSDGLQIQEFKLVTKEICKLPSFFSTALFRKIDVNNTGLVTRDAFVDYWVNGS 211
+ F H++G ++ KLV E+ ++ + T+L G +TRD + +N S
Sbjct: 64 VTDFPPFHANG--TEKAKLV--ELYRIVVYLGTSL---------GNITRDQKI---LNPS 107
Query: 212 MLTMDT 217
L++ +
Sbjct: 108 ALSLHS 113
>pdb|2VDD|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
Length = 460
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 180 SFFSTALFRKIDVNNTGLVTRDAFVDYWVNGSMLTMDTATQIFSILNQPDLKYLTQEDFK 239
S F + +R + + +D V Y + L ++TAT F++LN D+ TQ +
Sbjct: 96 SIFDMSKWRALTLQEKAAGIQD--VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKE 153
Query: 240 PVLREL 245
+ R+L
Sbjct: 154 AIYRQL 159
>pdb|2XMN|A Chain A, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
pdb|2XMN|B Chain B, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
pdb|2XMN|C Chain C, High Resolution Snapshots Of Defined Tolc Open States
Present An Iris-Like Movement Of Periplasmic Entrance
Helices
Length = 428
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 204 VDYWVNGSMLTMDTATQIFSILNQPDLKYLTQEDFKPVLREL 245
V Y + L ++TAT F++LN D+ TQ + + R+L
Sbjct: 96 VTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,154,935
Number of Sequences: 62578
Number of extensions: 687916
Number of successful extensions: 2215
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2154
Number of HSP's gapped (non-prelim): 93
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)