Your job contains 1 sequence.
>009230
MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL
ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI
EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY
LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG
ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELT
IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG
GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN
ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA
HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009230
(539 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2204584 - symbol:AT1G30680 species:3702 "Arabi... 1942 1.2e-200 1
TAIR|locus:2204559 - symbol:AT1G30660 "AT1G30660" species... 721 2.9e-71 1
UNIPROTKB|Q1L7I7 - symbol:Q1L7I7 "Mitochondrial helicase ... 156 7.6e-12 2
DICTYBASE|DDB_G0288209 - symbol:DDB_G0288209 "T7-like mit... 151 7.1e-11 2
UNIPROTKB|Q1L7I8 - symbol:Q1L7I8 "Mitochondrial helicase ... 113 1.3e-06 2
UNIPROTKB|Q6NU50 - symbol:MGC81247 "MGC81247 protein" spe... 116 9.1e-05 2
UNIPROTKB|Q5ZIW1 - symbol:PEO1 "Twinkle protein, mitochon... 102 0.00085 2
>TAIR|locus:2204584 [details] [associations]
symbol:AT1G30680 species:3702 "Arabidopsis thaliana"
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR007694
PROSITE:PS51199 InterPro:IPR006171 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0006260 GO:GO:0003678
GO:GO:0032508 eggNOG:NOG29349 Pfam:PF13662 SMART:SM00493
EMBL:BT046201 IPI:IPI00546189 RefSeq:NP_849735.1 UniGene:At.47034
ProteinModelPortal:B5X582 SMR:B5X582 PaxDb:B5X582 PRIDE:B5X582
EnsemblPlants:AT1G30680.1 GeneID:839948 KEGG:ath:AT1G30680
TAIR:At1g30680 HOGENOM:HOG000030580 OMA:GKSEWID PhylomeDB:B5X582
ProtClustDB:CLSN2918302 Genevestigator:B5X582 Uniprot:B5X582
Length = 709
Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
Identities = 355/536 (66%), Positives = 433/536 (80%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR KCG KG A + +S K++ R+IT + +ELEPL +E++ YFA R I
Sbjct: 164 CFRGKCGLKGGVRA----DGGLASADPIEKVE--RKITVEGIELEPLCDEIQDYFAARAI 217
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RNRVMQKR G E+VIAF YW+ G+LV+CKYR K F+QE+ T ++ YGLDDIE
Sbjct: 218 SRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDIE 277
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
S++IIVEGE+DKL+MEEAGFLNCVSVPDGAP+ VS K +PSE++DTKY++LWNC YL
Sbjct: 278 KTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDYL 337
Query: 182 KQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPGA 241
K+ASRI++ATDGD PGQA+AEE+A PKK++ +HFKDANEVLM GP
Sbjct: 338 KKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHL 397
Query: 242 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTI 301
LKE + +AE YPI+GLF+F+D+FDEIDAYY RT G E+G+STGW+ L+ LY+V+PGELT+
Sbjct: 398 LKEAILDAEPYPILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVPGELTV 457
Query: 302 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 361
VTG+PNSGKSEWIDA++CN+N GWKF LCSMENKVR+HARKLLEKHIKKPFF+A+YG
Sbjct: 458 VTGIPNSGKSEWIDAMLCNLNHSVGWKFALCSMENKVRDHARKLLEKHIKKPFFDADYGR 517
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
S +RM+VEE ++GK WL++TF IRCE DSLPSI WVL+ AKAAVLR+G+RGLVIDPYNE
Sbjct: 518 SVQRMSVEEKDEGKKWLNDTFYPIRCEMDSLPSIDWVLERAKAAVLRYGIRGLVIDPYNE 577
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 481
LDHQR QTETEYVSQMLT +KRF+QHH+CHVWFVAHP+QL +W G PNLYDISGSAH
Sbjct: 578 LDHQRTPRQTETEYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSAH 637
Query: 482 FINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
FINKCDNGI++HRNRD AGP+D VQ+ VRKVRNKV G IG+A+L Y+R TG Y D
Sbjct: 638 FINKCDNGIIVHRNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYSD 693
>TAIR|locus:2204559 [details] [associations]
symbol:AT1G30660 "AT1G30660" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006304 "DNA modification"
evidence=ISS] InterPro:IPR006171 EMBL:CP002684 Pfam:PF13662
SMART:SM00493 IPI:IPI00537269 RefSeq:NP_174354.4 UniGene:At.51843
ProteinModelPortal:F4I6E6 SMR:F4I6E6 PRIDE:F4I6E6
EnsemblPlants:AT1G30660.1 GeneID:839946 KEGG:ath:AT1G30660
OMA:GDKLIAY Uniprot:F4I6E6
Length = 337
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 146/251 (58%), Positives = 180/251 (71%)
Query: 4 RAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISA 63
R KCG KG VD S K++ R+IT +S++LEPL +E++ +FA R IS
Sbjct: 91 RRKCGLKGVLQ--VDGKLV--SKDPIGKVE--RKITVESIKLEPLCDEIQDFFAARAISG 144
Query: 64 ETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
+TL RNRVMQKR E+VIAF YW+ G+LV+CKYR KKF QE++T K+ YGLDDIE
Sbjct: 145 KTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEET 204
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 183
S+IIIVEGE DKL+MEEAGF NCVSVPDGAP +VS K +PSE +DT ++Y+WNC YLK+
Sbjct: 205 SEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCNDYLKK 264
Query: 184 ASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPGALK 243
ASRI++ATDGD PGQALAEELA PKK++ +HFKDANEVLM GP LK
Sbjct: 265 ASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLK 324
Query: 244 EVVENAELYPI 254
E + NAE YP+
Sbjct: 325 EAILNAEPYPL 335
>UNIPROTKB|Q1L7I7 [details] [associations]
symbol:Q1L7I7 "Mitochondrial helicase twinkle" species:5755
"Acanthamoeba castellanii" [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0043139 "5'-3' DNA helicase activity" evidence=ISS]
InterPro:IPR002694 InterPro:IPR007694 PROSITE:PS51199
InterPro:IPR006171 GO:GO:0005524 GO:GO:0008270 GO:GO:0042645
GO:GO:0003697 GO:GO:0003896 GO:GO:0043139 GO:GO:0006264
GO:GO:0006269 Gene3D:3.90.580.10 Pfam:PF13662 SMART:SM00493
EMBL:DQ005447 ProteinModelPortal:Q1L7I7 Uniprot:Q1L7I7
Length = 765
Score = 156 (60.0 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 88/367 (23%), Positives = 153/367 (41%)
Query: 181 LKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPG 240
L++ +I L D D PGQ A + A K+ D + KDAN+ L G
Sbjct: 381 LERFEKIYLWMDDDIPGQEGAAKFAQKLGIKRCLLVRT-KQGDPEGPKDANDALR-AGKD 438
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GI-STGWRALNE-LYNVLPG 297
L +++ A P + +F+D DE+ Y + S DE G+ S + +L + L G
Sbjct: 439 -LNAILKKAGRTPHQQVISFQDIADEV--YRNICSPDELAGVPSKMFPSLTKILKGHRKG 495
Query: 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357
ELT+ TG GK+ + L + G + + + E K A+K+L ++ K E
Sbjct: 496 ELTVFTGPTGVGKTTLLSQLSLDFAMQ-GVRTLWGNFEIKNTYLAQKMLLQYAGKNLAEL 554
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417
+R +E +A+ +R + S+ VLD AV H V +V+D
Sbjct: 555 Q-----DRAQWDE--ASRAFSDLPLYWMRFHGST--SVDQVLDAMDYAVYVHDVEHVVLD 605
Query: 418 PYNEL------DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP 471
+ + + + + + L +RFA H+ V HPR+ + P
Sbjct: 606 NLQFMLSGQAWGQEGVAAGNKFDIQDRALEEFRRFASTKNVHITLVIHPRKTED--DRPL 663
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 531
N+ + GS + DN +++ N+ + ++ V K N+ G +G L +N+
Sbjct: 664 NVASVFGSVKATQEADNVLILQYNKGEDWKWLE-----VAK--NRFDGELGPIALQFNKR 716
Query: 532 TGEYMDI 538
Y ++
Sbjct: 717 NKSYREM 723
Score = 87 (35.7 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 37/141 (26%), Positives = 67/141 (47%)
Query: 49 GNELRAYFAERLISAETLRRNRVMQKRHGH----EVVIAFPY------WRNGKLVNCKYR 98
GN+ + +R +S E +R+ +V ++ E + FP+ RN + K R
Sbjct: 256 GNKTKV---QRHLSEEVIRKYKVGATKYAFGGDSEQCVTFPWIDADAEGRNS-IRRLKIR 311
Query: 99 DFNKKFWQEKDT---EKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAP 154
K Q + F+G + ++ +I+I EGE D +++ +A L +S+P+GA
Sbjct: 312 SIKNKANQRLTPAGGQWGFFGWHTVPADAKEIVITEGEFDAMAVYQATGLPAISLPNGA- 370
Query: 155 SSVSKKNVPSEEQDTKYQYLW 175
S+ + +P E+ K YLW
Sbjct: 371 HSLPVELLPRLERFEKI-YLW 390
>DICTYBASE|DDB_G0288209 [details] [associations]
symbol:DDB_G0288209 "T7-like mitochondrial DNA
helicase" species:44689 "Dictyostelium discoideum" [GO:0043139
"5'-3' DNA helicase activity" evidence=IEA;ISS] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISS] [GO:0003678 "DNA
helicase activity" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=ISS] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR007694 PROSITE:PS51199 dictyBase:DDB_G0288209
InterPro:IPR006171 GO:GO:0005524 GO:GO:0042645 GO:GO:0003697
EMBL:AAFI02000109 GO:GO:0043139 GO:GO:0006264 eggNOG:NOG29349
Pfam:PF13662 SMART:SM00493 RefSeq:XP_636842.1
ProteinModelPortal:Q54J94 EnsemblProtists:DDB0304578 GeneID:8626511
KEGG:ddi:DDB_G0288209 InParanoid:Q54J94 OMA:ATHMNCH
ProtClustDB:CLSZ2429916 Uniprot:Q54J94
Length = 772
Score = 151 (58.2 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 84/363 (23%), Positives = 150/363 (41%)
Query: 181 LKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPG 240
L++ +I L D D PG A + + K+ND + KDAN+ L+ G
Sbjct: 416 LERFEKIYLWMDDDVPGMEGAAKFSEKLGIQRTFIVST-KQNDPNGPKDANDALL-AGKD 473
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI---STGW-RALNE-LYNVL 295
LK ++ A P + +F D + + H D + + W + N+ L
Sbjct: 474 -LKAILSTAANIPHDQICDFSD----VRSIIHNELKDPLSVIGKQSKWFPSFNKVLKGHR 528
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
GELTI +G GK+ + L + G + + S E KV ARK+L + F
Sbjct: 529 KGELTIFSGPTGIGKTSVLSQLSLDFCSQ-GTRTLWGSFELKVPRLARKMLSQ-----FS 582
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 414
N VE +++ SN +R + + V+D + AV V +
Sbjct: 583 NCNLDKH-----VENYQEIADNFSNMPMYFLRFFGST--QVDKVIDAMEYAVYVQDVEHI 635
Query: 415 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 474
V+D + + E + + +++FA H+ V HPR+ + + N+
Sbjct: 636 VLDNLQFMLGSQAKGIERFEIMDDSIEKLRKFASQKNVHITLVIHPRKQD--IDQVLNIN 693
Query: 475 DISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGE 534
DI G+A + DN I++ +++ + +D ++K N+ G +G LS+ + T
Sbjct: 694 DIFGTAKATQEADNVIILQNSKNNQRY-LD-----IKK--NRFSGDLGIIPLSFEKETNR 745
Query: 535 YMD 537
+ +
Sbjct: 746 FSE 748
Score = 83 (34.3 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 89 NGKLVNCKYRDFNKKFWQE---KDTEKVFYGLDDIEGES-DIIIVEGEMDKLSM-EEAGF 143
N ++ CK R +K Q K + F+G I ++ +II+ EGE D +++ +E G
Sbjct: 337 NIQVHRCKLRSTKEKSLQRIEPKGGKWGFFGWHTIPSDAKEIILTEGEYDAMAVYQETG- 395
Query: 144 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
+ +S+P+GA +S+ +P E+ K YLW
Sbjct: 396 IPTISLPNGA-NSLPIALLPLLERFEKI-YLW 425
>UNIPROTKB|Q1L7I8 [details] [associations]
symbol:Q1L7I8 "Mitochondrial helicase twinkle" species:5778
"Vermamoeba vermiformis" [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0043139 "5'-3' DNA helicase activity" evidence=ISS]
InterPro:IPR002694 InterPro:IPR007694 PROSITE:PS51199
InterPro:IPR006171 GO:GO:0005524 GO:GO:0008270 GO:GO:0042645
GO:GO:0003697 GO:GO:0003896 GO:GO:0043139 GO:GO:0006264
GO:GO:0006269 Gene3D:3.90.580.10 Pfam:PF13662 SMART:SM00493
EMBL:DQ005446 ProteinModelPortal:Q1L7I8 Uniprot:Q1L7I8
Length = 724
Score = 113 (44.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 80/369 (21%), Positives = 154/369 (41%)
Query: 181 LKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPG 240
L++ +I L D D GQ A++ A K KDAN+ L G
Sbjct: 362 LERFDKIYLWLDDDVVGQQAAQKYALKLGRERCYLVST-KLGATTGPKDANDALRQ-GHD 419
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG--ISTGWRALNELYNV-LPG 297
L +++ A P + NF + E+ + + D+ + LN+L G
Sbjct: 420 -LGTILKAARRLPHKQILNFNEIRSEV--FRELANPDQVAGRQMRSFPTLNKLLKGHRKG 476
Query: 298 ELTIVTGVPNSGKSEWIDAL---ICNINEHAGW-KFVLCSMENKVREHARKLLEKHIKKP 353
EL+I+TG GK+ I + +C+ + W F L N VR A+K+L + +K
Sbjct: 477 ELSILTGPTGIGKTTIISQISMDLCSQGVNTLWGSFEL----NNVRL-AKKMLNQFAQKN 531
Query: 354 FFEANYGGSAE-RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
E + AE + ++F Q + +R + ++ VLD AV + V
Sbjct: 532 L-EKHL---AEFDLWADKFSQVPLYF------MRFHGGT--EVEAVLDAMDYAVYVYDVE 579
Query: 413 GLVIDPYN---ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 469
+V+D ++ H + + + + +++ ++FA H+ + HPR+ + G+
Sbjct: 580 HIVLDNLQFMMQVGHFKGYERFDQ--LDSAISLFRKFATEKNVHITLIIHPRKEDD--GQ 635
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 529
++ + G+A + DN I++ + G R + +N+ G +G Y+
Sbjct: 636 ALSINSVFGTAKATQEADNVIIVQK------GKYYRY---LEVTKNRFSGDLGIVPYKYD 686
Query: 530 RVTGEYMDI 538
+ + +Y ++
Sbjct: 687 KESHKYFEL 695
Score = 81 (33.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 92 LVNCKYRDFNKKFWQEKDTEK---VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVS 148
LV KYR K+ Q + +G + I E+ +II EGE D +++ +A L +S
Sbjct: 287 LVRYKYRALGGKWLQRLEPIGGGWCVFGWNLIAPETSVIITEGEFDAMAVYQATGLPAIS 346
Query: 149 VPDGAPSSVSKKNVPSEEQDTKYQYLW 175
+P GA + + + + E+ K YLW
Sbjct: 347 LPCGA-NCLPVEVITMLERFDKI-YLW 371
>UNIPROTKB|Q6NU50 [details] [associations]
symbol:MGC81247 "MGC81247 protein" species:8355 "Xenopus
laevis" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISS] InterPro:IPR007694
PROSITE:PS51199 GO:GO:0005524 GO:GO:0042645 GO:GO:0003697
GO:GO:0043139 GO:GO:0006264 HOVERGEN:HBG059782 CTD:56652
EMBL:BC068751 RefSeq:NP_001084540.1 UniGene:Xl.34767
ProteinModelPortal:Q6NU50 GeneID:414487 KEGG:xla:414487
Xenbase:XB-GENE-6252836 Uniprot:Q6NU50
Length = 679
Score = 116 (45.9 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 71/285 (24%), Positives = 118/285 (41%)
Query: 257 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSE 312
+ +FR +E+ + + D+ W EL +L G ELT+ TG SGK+
Sbjct: 385 IISFRQLREEV--FGQLENADQVA-GVKWNRFPELNKLLKGHRRGELTVFTGPTGSGKTT 441
Query: 313 WID--AL-ICNINEHAGW-KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 368
+I AL +C + W F L N VR L K + F + +R+
Sbjct: 442 FISEYALDLCIQGINTLWGSFEL----NNVR------LAKIMLTQF-------ALQRLE- 483
Query: 369 EEFEQGKAWLSNTFSLIRC--ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426
E+ ++ W L C +IK V+D + AV + + ++ID + Q
Sbjct: 484 EQLDKYDEWADKFEDLPLCFMTFHGQQNIKAVMDTMQHAVYMYDITHVIIDNLQFMMGQE 543
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKC 486
+ M+ ++FA + CHV V HPR+ + + I GSA +
Sbjct: 544 NIYSDRFAAQDYMVGAFRKFATVNNCHVTVVIHPRKEDD--DKELQTSSIFGSAKASQEA 601
Query: 487 DNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
DN ++I ++R G R +QV +N+ G +G L +N+
Sbjct: 602 DN-VLILQDRKLVTGQGKRHLQVA----KNRFDGEVGVFSLEFNK 641
Score = 59 (25.8 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 44/176 (25%), Positives = 82/176 (46%)
Query: 16 LVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNE----LRAYFAERLISAETLRRNRV 71
LVD++ S S+ + K +R I + ++ LG E ++A F I+ TL++ V
Sbjct: 156 LVDSD-SDSAEDQL-KDSEVRRIWDRAVWFSDLGEEESHQIKAMFNITKIANNTLKKFGV 213
Query: 72 MQKRHGHEVVIAFPYW--RNGKLVNCKY--RDFNKKFWQEKDTEKV----FYGLDD--IE 121
+ +V FP++ R+ L K + NK+ +T +Y L +
Sbjct: 214 KCFQPTKSLV--FPWYNPRDSSLNGLKLLSAECNKQKVHYVETTYPRPARYYNLFGLCVS 271
Query: 122 G--ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
G E++++I E+D L++ ++ + +++P GA S + +P EQ K LW
Sbjct: 272 GKKETEVVITSREVDCLAIHQSTGVTTIALPRGA-SCLPPVLLPYLEQ-FKRIVLW 325
>UNIPROTKB|Q5ZIW1 [details] [associations]
symbol:PEO1 "Twinkle protein, mitochondrial" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0002020
"protease binding" evidence=IEA] [GO:0006268 "DNA unwinding
involved in replication" evidence=IEA] [GO:0006390 "transcription
from mitochondrial promoter" evidence=IEA] [GO:0034214 "protein
hexamerization" evidence=IEA] [GO:0051260 "protein
homooligomerization" evidence=IEA] [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
InterPro:IPR007694 PROSITE:PS51199 GO:GO:0005524 GO:GO:0051260
GO:GO:0042645 GO:GO:0003697 GO:GO:0034214 GO:GO:0043139
GO:GO:0006264 GO:GO:0006268 GO:GO:0006390 EMBL:AJ720673
IPI:IPI00583981 RefSeq:NP_001026515.1 UniGene:Gga.48127
ProteinModelPortal:Q5ZIW1 STRING:Q5ZIW1 GeneID:425626
KEGG:gga:425626 CTD:425626 eggNOG:NOG305396 HOGENOM:HOG000273872
HOVERGEN:HBG059782 InParanoid:Q5ZIW1 OrthoDB:EOG434W5N
NextBio:20827576 Uniprot:Q5ZIW1
Length = 669
Score = 102 (41.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 65/263 (24%), Positives = 103/263 (39%)
Query: 257 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSE 312
+ +FR +E+ + + E W EL +L G ELT+ TG SGK+
Sbjct: 373 IVSFRQLREEV---FGELANSEQVAGVKWARFPELNKLLKGHRRGELTVFTGPTGSGKTT 429
Query: 313 WID--AL-ICNINEHAGWKFVLCSME-NKVREHARKLLEKHIKKPFFEANYGGSAERMTV 368
+I AL +C W S E N +R L K + F A R
Sbjct: 430 FISEYALDLCTQGVCTLWG----SFEINNIR------LAKIMLTQF--------ATRRLE 471
Query: 369 EEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426
++ E W L +IK VLD + AV + + +V+D +
Sbjct: 472 DQLELYDEWADRFEDLPLYFMTFHGQQNIKTVLDTMQHAVYMYDITHVVVDNLQFMMGHE 531
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKC 486
+S ++ ++FA + CH+ V HPR+ + + I GSA +
Sbjct: 532 QLSADRLAAQDFIVGAFRKFATDNTCHITLVIHPRKEDD--EKELQTASIFGSAKASQEA 589
Query: 487 DNGIVIHRNRDPEAGPIDR-VQV 508
DN ++I ++R GP R +QV
Sbjct: 590 DN-VLILQDRKLTTGPGKRYLQV 611
Score = 64 (27.6 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 34/135 (25%), Positives = 63/135 (46%)
Query: 36 REITEDSLELEPLGNE-----LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW--- 87
R I E +L L L +E +A F ++ TL+R V R +V FP++
Sbjct: 161 RRIWERALPLGELLDEEETRATKAAFGIAPLADGTLKRFGVRYLRAAKALV--FPWFAPR 218
Query: 88 ----RNGKLVNCKYRDFNKKFWQEK----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSM 138
R KL+ + R + +E D + +GL I ++++++ E+D L++
Sbjct: 219 DAALRGLKLLVAEQRGDAVSYTEETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALAL 278
Query: 139 EEAGFLNCVSVPDGA 153
+A + C+++P GA
Sbjct: 279 HQATGVPCLALPRGA 293
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 539 526 0.00091 119 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 623 (66 KB)
Total size of DFA: 350 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 44.18u 0.16s 44.34t Elapsed: 00:00:02
Total cpu time: 44.18u 0.16s 44.34t Elapsed: 00:00:02
Start: Tue May 21 10:38:42 2013 End: Tue May 21 10:38:44 2013